Query 000159
Match_columns 2013
No_of_seqs 433 out of 1536
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 21:13:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1820 Microtubule-associated 100.0 1.6E-51 3.4E-56 531.1 35.8 745 607-1390 11-793 (815)
2 KOG1820 Microtubule-associated 100.0 1.3E-41 2.8E-46 439.3 43.4 753 20-817 14-792 (815)
3 KOG1824 TATA-binding protein-i 100.0 1.3E-22 2.9E-27 251.9 69.9 842 15-1051 9-970 (1233)
4 KOG2171 Karyopherin (importin) 99.9 5.1E-17 1.1E-21 210.6 70.6 834 289-1380 8-934 (1075)
5 KOG2171 Karyopherin (importin) 99.9 1.3E-15 2.8E-20 197.8 71.1 878 49-1067 115-1073(1075)
6 PF12348 CLASP_N: CLASP N term 99.9 1.1E-20 2.4E-25 221.0 20.0 210 284-496 7-227 (228)
7 PF12348 CLASP_N: CLASP N term 99.7 4.8E-17 1.1E-21 190.4 18.2 208 853-1063 7-227 (228)
8 KOG1824 TATA-binding protein-i 99.7 1.4E-11 3.1E-16 155.1 59.0 811 68-1042 149-1096(1233)
9 KOG1242 Protein containing ada 99.6 1.2E-13 2.7E-18 170.9 33.5 515 138-815 27-550 (569)
10 KOG2023 Nuclear transport rece 99.6 7.1E-12 1.5E-16 153.0 46.2 692 322-1066 125-882 (885)
11 KOG2956 CLIP-associating prote 99.6 4.8E-13 1E-17 159.2 27.1 387 681-1072 60-508 (516)
12 KOG2023 Nuclear transport rece 99.6 6.1E-11 1.3E-15 145.1 45.1 672 66-1000 142-855 (885)
13 KOG1242 Protein containing ada 99.5 2.6E-11 5.6E-16 150.7 31.6 350 46-481 90-451 (569)
14 KOG0213 Splicing factor 3b, su 99.4 9E-10 2E-14 135.6 41.3 584 336-1038 452-1062(1172)
15 PLN03200 cellulose synthase-in 99.4 7.8E-08 1.7E-12 135.9 62.6 773 52-1041 14-860 (2102)
16 PLN03200 cellulose synthase-in 99.4 3.8E-07 8.3E-12 129.2 64.7 807 288-1388 16-887 (2102)
17 KOG0915 Uncharacterized conser 99.4 1.3E-09 2.9E-14 144.2 37.8 565 403-1042 818-1428(1702)
18 KOG1241 Karyopherin (importin) 99.4 4.6E-09 9.9E-14 131.5 40.2 582 300-1049 145-819 (859)
19 COG5215 KAP95 Karyopherin (imp 99.2 5.4E-08 1.2E-12 117.8 39.3 501 328-1043 180-728 (858)
20 KOG2956 CLIP-associating prote 99.2 8.3E-09 1.8E-13 123.7 31.8 206 295-503 297-506 (516)
21 KOG0213 Splicing factor 3b, su 99.2 6.2E-07 1.4E-11 111.3 47.3 571 326-1052 512-1118(1172)
22 KOG1241 Karyopherin (importin) 99.2 1.2E-05 2.7E-10 101.7 58.6 564 295-1041 227-855 (859)
23 KOG0212 Uncharacterized conser 99.1 3.5E-08 7.5E-13 120.1 30.8 378 603-1042 2-407 (675)
24 KOG0212 Uncharacterized conser 99.1 6.1E-08 1.3E-12 118.0 32.6 400 717-1297 42-456 (675)
25 COG5181 HSH155 U2 snRNP splice 99.1 9E-08 1.9E-12 116.5 31.2 171 861-1039 696-868 (975)
26 KOG0211 Protein phosphatase 2A 99.0 1.2E-06 2.5E-11 115.5 39.9 563 293-1047 90-670 (759)
27 COG5181 HSH155 U2 snRNP splice 99.0 7.9E-06 1.7E-10 100.2 42.8 688 18-964 175-946 (975)
28 KOG0915 Uncharacterized conser 99.0 2.3E-05 5.1E-10 105.3 49.5 286 127-475 817-1111(1702)
29 KOG2933 Uncharacterized conser 98.9 1.3E-08 2.9E-13 116.8 12.9 182 290-473 93-276 (334)
30 PRK13800 putative oxidoreducta 98.7 1.4E-06 3E-11 121.2 27.9 270 687-1037 624-895 (897)
31 PF01602 Adaptin_N: Adaptin N 98.7 0.0001 2.2E-09 97.8 43.2 502 291-998 10-520 (526)
32 KOG1248 Uncharacterized conser 98.7 0.0011 2.4E-08 88.7 50.1 656 315-1058 82-873 (1176)
33 PF01602 Adaptin_N: Adaptin N 98.7 3E-05 6.6E-10 102.7 36.6 460 290-923 47-523 (526)
34 PRK13800 putative oxidoreducta 98.6 2.6E-06 5.6E-11 118.6 26.1 242 718-1039 622-865 (897)
35 PRK09687 putative lyase; Provi 98.6 3E-06 6.6E-11 101.8 23.0 147 856-1037 131-278 (280)
36 KOG0211 Protein phosphatase 2A 98.6 6E-05 1.3E-09 99.7 36.6 371 653-1047 247-631 (759)
37 COG5215 KAP95 Karyopherin (imp 98.6 0.0011 2.4E-08 81.6 43.1 467 332-980 270-780 (858)
38 KOG1248 Uncharacterized conser 98.6 0.013 2.8E-07 79.0 67.3 754 128-1070 93-923 (1176)
39 PTZ00429 beta-adaptin; Provisi 98.5 0.0015 3.2E-08 87.9 46.5 93 372-471 38-131 (746)
40 KOG2933 Uncharacterized conser 98.4 2.7E-06 5.9E-11 98.3 12.9 180 857-1039 92-275 (334)
41 PTZ00429 beta-adaptin; Provisi 98.3 0.00044 9.4E-09 92.8 34.5 358 605-1044 36-400 (746)
42 PRK09687 putative lyase; Provi 98.3 3.1E-05 6.8E-10 93.2 21.2 149 862-1039 100-248 (280)
43 KOG1060 Vesicle coat complex A 97.9 0.017 3.6E-07 74.5 32.7 104 364-475 69-173 (968)
44 KOG1943 Beta-tubulin folding c 97.8 0.27 5.8E-06 66.2 42.4 595 325-1071 341-987 (1133)
45 KOG1943 Beta-tubulin folding c 97.7 0.53 1.1E-05 63.6 45.4 498 362-1042 337-882 (1133)
46 KOG1240 Protein kinase contain 97.6 0.0033 7.2E-08 83.8 21.6 301 604-981 425-745 (1431)
47 PF05004 IFRD: Interferon-rela 97.5 0.0048 1E-07 75.5 20.7 190 289-478 47-261 (309)
48 PF10508 Proteasom_PSMB: Prote 97.5 0.31 6.7E-06 64.2 37.3 396 722-1243 43-465 (503)
49 PF10508 Proteasom_PSMB: Prote 97.3 0.22 4.8E-06 65.5 33.5 185 291-475 208-421 (503)
50 KOG2259 Uncharacterized conser 97.3 0.053 1.1E-06 68.9 24.9 250 716-998 197-471 (823)
51 KOG1240 Protein kinase contain 97.2 0.018 3.9E-07 77.2 20.3 288 684-1006 422-729 (1431)
52 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.0018 3.8E-08 65.1 8.8 93 869-963 2-94 (97)
53 KOG1062 Vesicle coat complex A 97.1 1.9 4.2E-05 56.8 36.6 144 347-499 87-231 (866)
54 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0025 5.3E-08 64.0 8.6 93 301-394 2-95 (97)
55 KOG1060 Vesicle coat complex A 97.0 0.2 4.2E-06 65.2 26.9 375 604-1045 38-425 (968)
56 KOG0166 Karyopherin (importin) 97.0 0.062 1.3E-06 68.4 21.9 330 854-1267 110-458 (514)
57 PF12460 MMS19_C: RNAPII trans 96.9 0.39 8.4E-06 61.8 29.0 191 857-1055 193-407 (415)
58 KOG1059 Vesicle coat complex A 96.9 0.4 8.7E-06 61.9 27.6 258 156-473 133-400 (877)
59 PF12717 Cnd1: non-SMC mitotic 96.8 0.022 4.7E-07 64.3 14.6 130 866-1003 1-140 (178)
60 KOG0166 Karyopherin (importin) 96.7 0.06 1.3E-06 68.5 19.1 347 604-967 69-438 (514)
61 PF12460 MMS19_C: RNAPII trans 96.7 0.1 2.3E-06 67.0 22.0 191 295-490 200-409 (415)
62 KOG1020 Sister chromatid cohes 96.6 6.5 0.00014 55.5 42.4 95 908-1002 1185-1295(1692)
63 COG1413 FOG: HEAT repeat [Ener 96.4 0.5 1.1E-05 59.0 25.1 154 865-1051 161-314 (335)
64 KOG1058 Vesicle coat complex C 96.4 0.87 1.9E-05 59.2 26.0 303 898-1289 102-429 (948)
65 KOG4535 HEAT and armadillo rep 96.4 2.9 6.3E-05 51.9 28.9 106 863-969 494-607 (728)
66 PF13646 HEAT_2: HEAT repeats; 96.3 0.023 5.1E-07 55.7 10.0 86 368-470 1-88 (88)
67 PF12717 Cnd1: non-SMC mitotic 96.3 0.092 2E-06 59.3 15.8 107 338-448 1-108 (178)
68 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0079 1.7E-07 53.8 5.6 55 417-472 1-55 (55)
69 KOG2259 Uncharacterized conser 96.3 0.23 5.1E-06 63.4 20.0 309 361-750 193-514 (823)
70 PF14500 MMS19_N: Dos2-interac 96.2 1.4 3.1E-05 52.8 25.9 241 171-494 2-257 (262)
71 PF12231 Rif1_N: Rap1-interact 96.2 1.6 3.4E-05 55.4 27.6 316 609-964 1-351 (372)
72 PF13251 DUF4042: Domain of un 96.1 0.036 7.8E-07 62.1 11.1 138 340-477 1-177 (182)
73 PF05004 IFRD: Interferon-rela 96.1 0.16 3.5E-06 62.3 17.6 184 857-1044 47-260 (309)
74 PF13646 HEAT_2: HEAT repeats; 96.0 0.019 4.1E-07 56.4 7.5 85 856-961 2-88 (88)
75 KOG1059 Vesicle coat complex A 96.0 2.9 6.4E-05 54.5 27.8 167 854-1032 219-392 (877)
76 cd00020 ARM Armadillo/beta-cat 96.0 0.014 3E-07 60.5 6.7 109 855-964 9-119 (120)
77 PF02985 HEAT: HEAT repeat; I 96.0 0.01 2.2E-07 46.5 4.1 30 446-475 1-30 (31)
78 cd00020 ARM Armadillo/beta-cat 95.9 0.037 8E-07 57.3 9.4 107 366-473 7-119 (120)
79 KOG1061 Vesicle coat complex A 95.8 0.66 1.4E-05 61.0 21.8 363 10-479 120-491 (734)
80 KOG1061 Vesicle coat complex A 95.8 1.1 2.3E-05 59.2 23.6 375 604-1031 89-479 (734)
81 KOG4535 HEAT and armadillo rep 95.8 0.21 4.6E-06 61.3 15.8 403 19-470 4-458 (728)
82 KOG1062 Vesicle coat complex A 95.7 3.8 8.2E-05 54.3 27.5 69 938-1008 352-420 (866)
83 COG5240 SEC21 Vesicle coat com 95.6 9.9 0.00022 48.4 34.0 112 344-466 40-158 (898)
84 KOG2032 Uncharacterized conser 95.6 0.42 9E-06 59.7 17.8 211 289-500 221-442 (533)
85 KOG2032 Uncharacterized conser 95.5 0.23 4.9E-06 61.9 15.1 191 858-1053 222-428 (533)
86 PF10274 ParcG: Parkin co-regu 95.4 0.077 1.7E-06 59.1 10.0 119 854-973 39-172 (183)
87 PF13513 HEAT_EZ: HEAT-like re 95.4 0.018 3.8E-07 51.5 4.1 55 909-963 1-55 (55)
88 KOG1078 Vesicle coat complex C 95.3 3.9 8.6E-05 54.0 25.3 51 987-1040 480-531 (865)
89 KOG1058 Vesicle coat complex C 95.2 5.2 0.00011 52.5 26.1 131 905-1044 292-428 (948)
90 KOG1020 Sister chromatid cohes 95.1 26 0.00055 50.0 45.5 51 933-983 1336-1388(1692)
91 KOG0413 Uncharacterized conser 95.0 20 0.00044 48.4 34.6 128 909-1044 945-1076(1529)
92 TIGR02270 conserved hypothetic 94.9 1.1 2.4E-05 57.1 19.2 145 856-1038 120-264 (410)
93 COG1413 FOG: HEAT repeat [Ener 94.8 0.46 9.9E-06 59.3 15.6 154 856-1042 46-210 (335)
94 KOG2025 Chromosome condensatio 94.8 0.34 7.4E-06 62.4 13.9 206 849-1068 81-291 (892)
95 cd03567 VHS_GGA VHS domain fam 94.5 0.64 1.4E-05 50.1 13.5 110 862-980 14-131 (139)
96 KOG4524 Uncharacterized conser 94.4 10 0.00022 51.6 26.5 99 279-378 798-901 (1014)
97 KOG0392 SNF2 family DNA-depend 94.4 0.26 5.5E-06 67.0 12.3 156 911-1069 792-960 (1549)
98 cd03568 VHS_STAM VHS domain fa 94.3 0.57 1.2E-05 50.9 12.7 99 862-969 13-114 (144)
99 COG5096 Vesicle coat complex, 94.2 21 0.00045 48.5 29.0 166 862-1042 28-196 (757)
100 PF02985 HEAT: HEAT repeat; I 94.1 0.071 1.5E-06 41.7 4.0 29 1014-1042 2-30 (31)
101 TIGR02270 conserved hypothetic 94.1 0.4 8.7E-06 61.0 12.8 119 326-472 87-205 (410)
102 PF04118 Dopey_N: Dopey, N-ter 94.0 0.86 1.9E-05 55.6 14.9 165 870-1044 72-254 (307)
103 cd03561 VHS VHS domain family; 93.8 0.81 1.8E-05 49.1 12.8 100 862-970 13-117 (133)
104 KOG0392 SNF2 family DNA-depend 93.8 0.35 7.5E-06 65.8 11.6 200 300-502 748-960 (1549)
105 KOG1949 Uncharacterized conser 93.7 14 0.00031 48.3 24.8 184 767-1002 182-371 (1005)
106 PF14500 MMS19_N: Dos2-interac 93.5 13 0.00028 44.8 23.4 186 866-1056 53-252 (262)
107 COG5096 Vesicle coat complex, 93.4 2.2 4.7E-05 57.4 17.9 167 294-475 28-196 (757)
108 COG5218 YCG1 Chromosome conden 93.2 1.8 3.8E-05 54.9 15.5 202 854-1070 92-295 (885)
109 cd03569 VHS_Hrs_Vps27p VHS dom 93.1 1.3 2.9E-05 47.9 13.0 101 862-971 17-120 (142)
110 smart00288 VHS Domain present 93.0 1.1 2.4E-05 48.0 12.1 98 862-968 13-114 (133)
111 PF00790 VHS: VHS domain; Int 93.0 0.51 1.1E-05 51.1 9.6 108 862-978 18-131 (140)
112 KOG1077 Vesicle coat complex A 92.9 29 0.00063 45.7 25.6 111 892-1006 326-437 (938)
113 KOG2025 Chromosome condensatio 92.8 35 0.00077 45.1 26.3 199 138-428 52-255 (892)
114 COG5064 SRP1 Karyopherin (impo 92.6 5 0.00011 48.0 17.2 302 856-1200 74-399 (526)
115 KOG1077 Vesicle coat complex A 92.5 29 0.00063 45.7 24.8 295 106-436 124-437 (938)
116 KOG1967 DNA repair/transcripti 91.9 0.76 1.6E-05 61.2 10.7 146 323-473 865-1023(1030)
117 COG5064 SRP1 Karyopherin (impo 91.9 2.1 4.5E-05 51.0 13.1 303 604-925 74-399 (526)
118 PF04118 Dopey_N: Dopey, N-ter 91.9 4.9 0.00011 49.2 17.1 174 295-471 21-251 (307)
119 KOG4224 Armadillo repeat prote 91.9 1.8 4E-05 51.9 12.8 187 854-1043 252-448 (550)
120 KOG1525 Sister chromatid cohes 91.8 26 0.00056 50.4 25.8 236 663-966 164-406 (1266)
121 cd00197 VHS_ENTH_ANTH VHS, ENT 91.7 1.4 3.1E-05 45.8 10.8 88 872-964 19-114 (115)
122 KOG4653 Uncharacterized conser 91.3 15 0.00032 49.5 21.0 198 719-976 729-928 (982)
123 cd03565 VHS_Tom1 VHS domain fa 91.3 2.4 5.1E-05 46.0 12.2 105 862-975 14-125 (141)
124 KOG2160 Armadillo/beta-catenin 91.2 5.1 0.00011 49.1 16.0 174 865-1042 95-283 (342)
125 PF12719 Cnd3: Nuclear condens 91.1 2.3 4.9E-05 52.3 13.5 126 71-196 2-142 (298)
126 KOG1243 Protein kinase [Genera 90.8 0.74 1.6E-05 60.1 8.9 183 852-1043 329-517 (690)
127 KOG1967 DNA repair/transcripti 90.8 0.83 1.8E-05 60.8 9.4 144 850-996 864-1018(1030)
128 PF10274 ParcG: Parkin co-regu 90.5 1.5 3.2E-05 49.2 9.8 91 400-491 35-128 (183)
129 PF12719 Cnd3: Nuclear condens 90.4 3.7 7.9E-05 50.5 14.4 127 349-475 7-144 (298)
130 PF11865 DUF3385: Domain of un 90.3 2.7 5.9E-05 46.6 11.9 146 321-477 6-160 (160)
131 KOG0168 Putative ubiquitin fus 90.2 8 0.00017 51.5 17.2 176 298-477 181-367 (1051)
132 KOG1243 Protein kinase [Genera 89.7 0.89 1.9E-05 59.4 8.4 109 362-473 326-436 (690)
133 cd03568 VHS_STAM VHS domain fa 89.5 5.1 0.00011 43.6 12.9 82 398-479 32-115 (144)
134 PF13251 DUF4042: Domain of un 89.2 2.7 5.8E-05 47.5 10.7 133 910-1043 1-176 (182)
135 cd03569 VHS_Hrs_Vps27p VHS dom 89.2 1.8 3.9E-05 46.9 9.1 77 125-201 38-118 (142)
136 PF14664 RICTOR_N: Rapamycin-i 88.9 69 0.0015 40.6 24.1 170 865-1038 80-266 (371)
137 PF04826 Arm_2: Armadillo-like 88.6 6.1 0.00013 47.2 13.9 176 9-188 51-253 (254)
138 PF12231 Rif1_N: Rap1-interact 87.8 91 0.002 39.7 28.5 311 20-396 2-353 (372)
139 KOG1525 Sister chromatid cohes 87.2 23 0.0005 50.9 19.9 253 766-1042 58-330 (1266)
140 PF05804 KAP: Kinesin-associat 87.0 82 0.0018 43.2 24.3 128 916-1043 509-651 (708)
141 KOG1078 Vesicle coat complex C 86.7 1.4E+02 0.0029 40.5 33.5 95 687-787 432-531 (865)
142 COG5240 SEC21 Vesicle coat com 86.5 1.1E+02 0.0025 39.5 25.3 67 715-787 485-554 (898)
143 KOG2160 Armadillo/beta-catenin 86.5 38 0.00082 41.8 18.7 182 294-479 92-287 (342)
144 KOG0803 Predicted E3 ubiquitin 86.0 7.5 0.00016 55.6 14.4 201 857-1057 45-279 (1312)
145 KOG1087 Cytosolic sorting prot 85.9 3.8 8.2E-05 52.6 10.6 110 860-978 12-126 (470)
146 KOG0168 Putative ubiquitin fus 84.8 24 0.00051 47.5 16.8 192 719-967 169-366 (1051)
147 PF00790 VHS: VHS domain; Int 84.8 12 0.00026 40.6 12.5 96 294-396 18-119 (140)
148 cd00197 VHS_ENTH_ANTH VHS, ENT 84.5 6.3 0.00014 41.1 9.9 88 304-394 19-114 (115)
149 PF13001 Ecm29: Proteasome sta 84.4 1.6E+02 0.0034 39.2 35.8 117 357-477 14-137 (501)
150 cd03561 VHS VHS domain family; 84.3 16 0.00035 39.2 13.1 82 398-479 32-117 (133)
151 PF13001 Ecm29: Proteasome sta 83.9 1.1E+02 0.0024 40.6 23.2 116 927-1043 14-136 (501)
152 KOG2549 Transcription initiati 83.9 30 0.00064 44.7 16.7 178 858-1045 212-419 (576)
153 PLN03076 ARF guanine nucleotid 83.7 36 0.00078 51.0 19.9 183 297-479 1149-1381(1780)
154 cd03567 VHS_GGA VHS domain fam 83.2 19 0.00042 38.9 13.0 96 294-396 14-117 (139)
155 KOG2149 Uncharacterized conser 82.5 7.4 0.00016 48.3 10.6 112 856-968 61-173 (393)
156 PF08623 TIP120: TATA-binding 82.4 8.5 0.00018 42.9 10.1 91 362-454 5-115 (169)
157 PF04826 Arm_2: Armadillo-like 82.2 18 0.00039 43.3 13.6 170 290-464 59-252 (254)
158 PF12830 Nipped-B_C: Sister ch 82.2 17 0.00036 41.5 12.9 115 363-477 5-122 (187)
159 KOG0946 ER-Golgi vesicle-tethe 82.0 2.1E+02 0.0045 38.9 24.6 117 681-798 19-161 (970)
160 COG5218 YCG1 Chromosome conden 82.0 22 0.00047 45.7 14.3 196 291-501 97-293 (885)
161 PF05918 API5: Apoptosis inhib 82.0 27 0.00059 46.0 15.9 126 324-456 58-189 (556)
162 KOG0803 Predicted E3 ubiquitin 81.9 22 0.00049 51.1 16.2 191 289-479 45-268 (1312)
163 PF10521 DUF2454: Protein of u 81.8 18 0.0004 44.0 13.9 138 321-459 115-279 (282)
164 KOG2149 Uncharacterized conser 81.4 24 0.00053 44.0 14.4 109 330-438 63-176 (393)
165 PF10363 DUF2435: Protein of u 81.1 6.4 0.00014 39.4 7.8 80 405-486 5-84 (92)
166 PF12830 Nipped-B_C: Sister ch 81.0 4.9 0.00011 45.8 8.0 69 129-200 9-77 (187)
167 KOG2549 Transcription initiati 80.7 25 0.00055 45.3 14.5 177 294-478 216-419 (576)
168 cd03572 ENTH_epsin_related ENT 80.4 8.9 0.00019 40.4 8.9 74 399-473 34-118 (122)
169 KOG1949 Uncharacterized conser 80.3 9.6 0.00021 49.7 10.7 140 901-1041 180-331 (1005)
170 PF11640 TAN: Telomere-length 80.3 14 0.00031 40.7 11.1 93 857-949 8-120 (155)
171 KOG4653 Uncharacterized conser 80.3 14 0.00031 49.6 12.5 180 856-1047 730-924 (982)
172 cd03572 ENTH_epsin_related ENT 80.1 9.5 0.00021 40.2 9.0 88 873-965 21-119 (122)
173 cd08050 TAF6 TATA Binding Prot 80.0 20 0.00044 44.9 13.6 129 860-998 185-336 (343)
174 KOG4524 Uncharacterized conser 79.7 2.7E+02 0.0059 38.8 42.6 63 907-969 560-622 (1014)
175 PF08167 RIX1: rRNA processing 79.4 11 0.00023 42.2 9.9 106 289-396 29-144 (165)
176 PF10363 DUF2435: Protein of u 78.9 11 0.00023 37.9 8.6 84 857-949 7-90 (92)
177 PF11865 DUF3385: Domain of un 78.8 14 0.0003 41.1 10.4 70 897-966 88-158 (160)
178 KOG3961 Uncharacterized conser 78.8 9.1 0.0002 43.3 8.7 117 854-972 115-246 (262)
179 PF08506 Cse1: Cse1; InterPro 78.6 21 0.00046 45.2 13.2 52 414-469 319-370 (370)
180 COG5116 RPN2 26S proteasome re 78.5 8.1 0.00018 49.1 9.1 116 334-460 561-677 (926)
181 PF08167 RIX1: rRNA processing 78.5 46 0.00099 37.2 14.5 115 321-437 21-148 (165)
182 KOG0414 Chromosome condensatio 78.1 25 0.00054 49.0 14.1 131 336-475 934-1065(1251)
183 smart00288 VHS Domain present 78.0 26 0.00056 37.7 11.9 82 398-479 32-116 (133)
184 COG5116 RPN2 26S proteasome re 77.9 15 0.00032 46.9 11.1 163 297-478 476-654 (926)
185 KOG1087 Cytosolic sorting prot 77.9 8.8 0.00019 49.4 9.6 97 293-396 13-113 (470)
186 PF12074 DUF3554: Domain of un 77.5 1.1E+02 0.0023 38.5 19.2 201 717-929 22-240 (339)
187 PF11864 DUF3384: Domain of un 77.1 1.8E+02 0.0038 38.3 21.6 132 654-787 188-329 (464)
188 KOG2199 Signal transducing ada 77.0 11 0.00025 46.1 9.5 79 893-971 43-124 (462)
189 PF08064 UME: UME (NUC010) dom 76.5 19 0.00041 37.2 9.9 73 414-489 26-98 (107)
190 KOG1924 RhoA GTPase effector D 76.2 2.1E+02 0.0046 38.6 20.6 48 382-432 269-317 (1102)
191 PF05804 KAP: Kinesin-associat 75.7 32 0.0007 46.9 14.4 166 306-475 471-650 (708)
192 PF05918 API5: Apoptosis inhib 74.7 63 0.0014 42.7 16.1 133 338-479 35-167 (556)
193 PF01603 B56: Protein phosphat 74.7 67 0.0015 41.4 16.5 203 289-498 137-343 (409)
194 PF08161 NUC173: NUC173 domain 74.5 11 0.00024 43.3 8.4 112 909-1021 14-125 (198)
195 KOG2062 26S proteasome regulat 74.5 24 0.00051 46.8 11.9 134 329-478 523-657 (929)
196 KOG2062 26S proteasome regulat 74.3 31 0.00068 45.7 12.9 161 860-1037 526-690 (929)
197 PF10521 DUF2454: Protein of u 73.4 29 0.00063 42.3 12.3 159 21-181 85-278 (282)
198 PF11698 V-ATPase_H_C: V-ATPas 73.2 25 0.00053 36.9 9.7 79 886-966 35-116 (119)
199 PF11698 V-ATPase_H_C: V-ATPas 72.2 19 0.00041 37.8 8.5 72 403-475 43-116 (119)
200 cd03565 VHS_Tom1 VHS domain fa 71.4 54 0.0012 35.7 12.3 82 398-479 33-120 (141)
201 KOG0889 Histone acetyltransfer 70.7 7.7E+02 0.017 39.7 30.0 179 754-979 980-1171(3550)
202 KOG2011 Sister chromatid cohes 69.4 2.6E+02 0.0056 39.7 20.5 132 899-1036 291-430 (1048)
203 KOG4413 26S proteasome regulat 69.1 2.7E+02 0.0059 33.9 21.3 153 603-766 84-263 (524)
204 KOG2137 Protein kinase [Signal 68.9 61 0.0013 43.4 14.0 167 318-499 381-552 (700)
205 KOG4224 Armadillo repeat prote 68.5 49 0.0011 40.5 11.9 148 324-473 250-404 (550)
206 PLN03076 ARF guanine nucleotid 68.0 1.1E+02 0.0023 46.4 17.7 181 863-1046 1147-1381(1780)
207 PF05536 Neurochondrin: Neuroc 67.9 65 0.0014 43.1 14.5 173 305-479 77-266 (543)
208 PF11640 TAN: Telomere-length 67.1 57 0.0012 36.0 11.7 47 289-335 8-58 (155)
209 COG5098 Chromosome condensatio 65.7 32 0.0007 45.0 10.2 111 857-968 303-418 (1128)
210 KOG2011 Sister chromatid cohes 65.5 26 0.00057 48.9 10.2 78 1303-1381 299-378 (1048)
211 COG5098 Chromosome condensatio 65.4 77 0.0017 41.8 13.4 104 333-436 307-419 (1128)
212 PF08506 Cse1: Cse1; InterPro 65.3 38 0.00082 42.9 11.1 127 909-1036 225-370 (370)
213 COG5095 TAF6 Transcription ini 65.2 54 0.0012 39.1 11.1 113 358-479 193-321 (450)
214 KOG4413 26S proteasome regulat 64.9 20 0.00044 42.9 7.8 88 386-473 63-156 (524)
215 smart00802 UME Domain in UVSB 64.4 43 0.00093 34.6 9.3 76 895-972 11-90 (107)
216 PF08064 UME: UME (NUC010) dom 63.6 52 0.0011 34.0 9.8 77 896-974 12-92 (107)
217 KOG4825 Component of synaptic 63.1 65 0.0014 40.2 11.7 198 600-803 392-610 (666)
218 KOG1822 Uncharacterized conser 61.4 5E+02 0.011 39.1 21.1 298 610-967 812-1129(2067)
219 KOG1991 Nuclear transport rece 61.2 6.5E+02 0.014 35.4 36.3 437 16-501 94-599 (1010)
220 PF05536 Neurochondrin: Neuroc 59.6 5.8E+02 0.013 34.3 27.3 152 893-1048 96-268 (543)
221 PF12765 Cohesin_HEAT: HEAT re 59.5 9.4 0.0002 32.3 2.9 26 444-469 17-42 (42)
222 KOG2199 Signal transducing ada 59.2 1.1E+02 0.0024 38.1 12.6 91 399-489 41-133 (462)
223 COG5095 TAF6 Transcription ini 59.0 1.2E+02 0.0026 36.3 12.4 111 1169-1289 197-320 (450)
224 PF08161 NUC173: NUC173 domain 58.4 90 0.002 36.0 11.6 106 341-451 16-123 (198)
225 PF12397 U3snoRNP10: U3 small 58.2 35 0.00076 35.9 7.7 83 1290-1375 5-95 (121)
226 KOG1293 Proteins containing ar 57.0 4.3E+02 0.0094 35.4 18.1 131 340-473 392-532 (678)
227 KOG1993 Nuclear transport rece 56.3 32 0.0007 46.0 8.2 240 774-1026 412-669 (978)
228 PF14664 RICTOR_N: Rapamycin-i 56.2 2.4E+02 0.0051 36.0 15.8 174 297-472 80-267 (371)
229 PF08767 CRM1_C: CRM1 C termin 55.7 1.2E+02 0.0027 37.6 13.1 93 343-436 90-198 (319)
230 KOG2137 Protein kinase [Signal 55.2 2.2E+02 0.0048 38.4 15.5 146 322-475 345-497 (700)
231 KOG1822 Uncharacterized conser 55.1 1.4E+02 0.003 44.3 14.4 134 333-469 884-1027(2067)
232 PF08623 TIP120: TATA-binding 54.0 60 0.0013 36.3 8.8 75 867-945 41-115 (169)
233 smart00802 UME Domain in UVSB 53.8 82 0.0018 32.6 9.2 71 416-489 28-98 (107)
234 PF08045 CDC14: Cell division 53.1 1.6E+02 0.0035 35.3 12.7 89 1276-1365 111-209 (257)
235 cd08050 TAF6 TATA Binding Prot 52.4 1.5E+02 0.0033 37.3 13.2 111 1174-1290 182-302 (343)
236 PF12783 Sec7_N: Guanine nucle 52.3 74 0.0016 35.5 9.6 100 866-965 35-146 (168)
237 PF00514 Arm: Armadillo/beta-c 50.6 24 0.00051 29.4 4.0 29 445-473 12-40 (41)
238 PF12074 DUF3554: Domain of un 49.5 1.5E+02 0.0032 37.2 12.7 94 367-460 23-122 (339)
239 PF14228 MOR2-PAG1_mid: Cell m 48.9 2E+02 0.0044 41.6 14.7 82 1190-1285 490-572 (1120)
240 KOG0413 Uncharacterized conser 48.9 9.7E+02 0.021 33.7 31.3 181 854-1039 473-683 (1529)
241 COG5656 SXM1 Importin, protein 48.7 8.9E+02 0.019 33.2 25.9 304 972-1361 461-802 (970)
242 PF11841 DUF3361: Domain of un 47.8 4.3E+02 0.0094 29.4 14.0 106 381-488 32-145 (160)
243 KOG0946 ER-Golgi vesicle-tethe 47.7 1.5E+02 0.0033 40.0 12.2 167 289-477 26-198 (970)
244 KOG4199 Uncharacterized conser 46.8 4.6E+02 0.0099 32.4 14.8 175 297-481 119-320 (461)
245 cd00256 VATPase_H VATPase_H, r 46.6 2.7E+02 0.0058 36.1 14.1 149 324-474 227-425 (429)
246 PF12765 Cohesin_HEAT: HEAT re 46.6 28 0.00061 29.5 3.7 34 159-192 9-42 (42)
247 KOG4825 Component of synaptic 46.3 1.6E+02 0.0035 37.0 11.4 217 16-234 398-638 (666)
248 PF11935 DUF3453: Domain of un 46.2 5.4E+02 0.012 30.6 15.9 83 895-981 114-210 (239)
249 KOG2753 Uncharacterized conser 46.2 6.7E+02 0.014 31.1 16.6 98 947-1044 117-219 (378)
250 PF11701 UNC45-central: Myosin 45.4 45 0.00097 36.9 6.3 128 63-193 16-155 (157)
251 PF01347 Vitellogenin_N: Lipop 45.4 9.6E+02 0.021 32.7 20.9 113 863-997 500-617 (618)
252 PF01347 Vitellogenin_N: Lipop 45.2 86 0.0019 42.8 10.4 131 325-469 431-584 (618)
253 PF03378 CAS_CSE1: CAS/CSE pro 44.3 4.6E+02 0.0099 34.2 16.0 204 844-1053 14-241 (435)
254 KOG2021 Nuclear mRNA export fa 44.2 1E+03 0.022 32.7 24.8 115 684-800 7-132 (980)
255 PF03224 V-ATPase_H_N: V-ATPas 43.4 6.9E+02 0.015 30.9 17.0 154 289-459 109-273 (312)
256 PF08767 CRM1_C: CRM1 C termin 41.8 6.3E+02 0.014 31.5 16.2 65 414-478 131-198 (319)
257 PF11935 DUF3453: Domain of un 40.1 6.9E+02 0.015 29.7 15.5 73 334-434 2-74 (239)
258 KOG1517 Guanine nucleotide bin 39.4 1E+02 0.0022 42.8 8.9 67 410-476 606-673 (1387)
259 PF12530 DUF3730: Protein of u 39.3 6.3E+02 0.014 29.9 15.1 115 341-459 100-217 (234)
260 PF08569 Mo25: Mo25-like; Int 39.0 2E+02 0.0044 36.0 11.2 118 289-408 168-295 (335)
261 PF14225 MOR2-PAG1_C: Cell mor 38.2 5.5E+02 0.012 31.0 14.3 138 899-1044 115-257 (262)
262 PF04388 Hamartin: Hamartin pr 37.8 4.7E+02 0.01 36.1 15.3 115 366-490 39-155 (668)
263 KOG1837 Uncharacterized conser 37.8 1.7E+03 0.037 33.4 26.2 79 1292-1370 1539-1621(1621)
264 KOG0414 Chromosome condensatio 37.7 1.5E+03 0.033 32.8 60.9 140 893-1040 917-1063(1251)
265 PF12243 CTK3: CTD kinase subu 37.7 4.3E+02 0.0094 28.8 11.9 105 364-473 6-118 (139)
266 KOG1789 Endocytosis protein RM 36.2 1.5E+03 0.033 32.3 24.7 144 29-179 1743-1905(2235)
267 PF11701 UNC45-central: Myosin 35.3 3.8E+02 0.0083 29.6 11.6 126 341-471 21-156 (157)
268 PF14225 MOR2-PAG1_C: Cell mor 35.0 8.9E+02 0.019 29.3 16.3 174 295-478 75-258 (262)
269 PF08389 Xpo1: Exportin 1-like 34.8 2E+02 0.0043 30.7 9.3 64 402-469 81-148 (148)
270 PF12333 Ipi1_N: Rix1 complex 34.1 1.3E+02 0.0027 30.9 7.0 37 401-437 9-45 (102)
271 COG3682 Predicted transcriptio 33.9 50 0.0011 34.8 4.0 43 1640-1705 9-51 (123)
272 smart00638 LPD_N Lipoprotein N 33.9 4E+02 0.0087 36.0 13.9 136 894-1036 392-540 (574)
273 PF12612 TFCD_C: Tubulin foldi 33.8 6.3E+02 0.014 28.9 13.5 129 23-158 19-159 (193)
274 KOG0891 DNA-dependent protein 33.6 2.4E+03 0.052 33.9 39.4 555 281-997 90-758 (2341)
275 KOG1851 Uncharacterized conser 33.1 2E+03 0.043 32.8 25.0 75 402-476 1525-1600(1710)
276 smart00582 RPR domain present 32.5 2.7E+02 0.0058 29.1 9.5 99 370-473 4-106 (121)
277 KOG1566 Conserved protein Mo25 32.0 7.9E+02 0.017 30.4 13.8 179 14-196 23-240 (342)
278 PF10441 Urb2: Urb2/Npa2 famil 31.9 8.9E+02 0.019 28.4 18.8 46 456-501 168-213 (223)
279 PF08569 Mo25: Mo25-like; Int 31.5 1.1E+03 0.025 29.5 18.9 202 290-502 81-308 (335)
280 KOG1517 Guanine nucleotide bin 31.5 3.1E+02 0.0068 38.5 11.5 72 325-396 599-672 (1387)
281 KOG1851 Uncharacterized conser 31.5 4.8E+02 0.01 38.5 13.6 127 852-981 1521-1656(1710)
282 PF00514 Arm: Armadillo/beta-c 31.3 65 0.0014 26.7 3.7 28 169-196 13-40 (41)
283 KOG2022 Nuclear transport rece 31.0 1.7E+03 0.037 31.3 36.1 108 604-714 465-579 (982)
284 PF03378 CAS_CSE1: CAS/CSE pro 31.0 5.5E+02 0.012 33.5 13.7 131 347-478 48-192 (435)
285 PF06371 Drf_GBD: Diaphanous G 31.0 61 0.0013 36.6 4.7 90 107-196 90-186 (187)
286 cd03562 CID CID (CTD-Interacti 31.0 4.6E+02 0.01 27.1 10.8 69 402-470 36-104 (114)
287 smart00638 LPD_N Lipoprotein N 30.3 6.4E+02 0.014 34.1 15.0 121 344-479 375-514 (574)
288 PF08389 Xpo1: Exportin 1-like 29.9 2.8E+02 0.006 29.6 9.4 96 381-477 3-118 (148)
289 PF12422 Condensin2nSMC: Conde 29.4 2.8E+02 0.006 30.6 9.2 29 1010-1038 116-145 (152)
290 PF03224 V-ATPase_H_N: V-ATPas 29.0 2.3E+02 0.0051 35.0 9.7 111 363-475 56-180 (312)
291 PF12783 Sec7_N: Guanine nucle 29.0 4.1E+02 0.009 29.5 10.8 100 297-396 34-147 (168)
292 KOG1789 Endocytosis protein RM 28.7 4.6E+02 0.01 36.8 12.1 84 412-497 1821-1908(2235)
293 COG5231 VMA13 Vacuolar H+-ATPa 28.6 1.2E+03 0.026 28.8 16.0 68 1291-1358 356-426 (432)
294 KOG0567 HEAT repeat-containing 27.8 2.8E+02 0.0061 33.2 9.1 56 1294-1358 221-278 (289)
295 KOG2213 Apoptosis inhibitor 5/ 27.5 8.2E+02 0.018 31.0 13.1 129 321-460 25-166 (460)
296 PF01603 B56: Protein phosphat 26.8 1.5E+03 0.032 29.3 17.5 200 604-816 136-348 (409)
297 KOG1837 Uncharacterized conser 26.7 2.7E+02 0.0058 40.8 10.1 70 728-798 1551-1621(1621)
298 KOG0567 HEAT repeat-containing 26.5 3.3E+02 0.0071 32.7 9.3 91 937-1039 188-278 (289)
299 PF04499 SAPS: SIT4 phosphatas 26.2 3.7E+02 0.008 35.4 11.0 73 958-1043 21-94 (475)
300 PF11707 Npa1: Ribosome 60S bi 26.2 5.3E+02 0.011 32.3 12.1 143 54-196 58-236 (330)
301 KOG2286 Exocyst complex subuni 25.2 1.9E+03 0.042 30.1 17.2 92 1298-1390 550-652 (667)
302 PF12422 Condensin2nSMC: Conde 25.2 9.3E+02 0.02 26.5 12.3 126 1174-1317 18-145 (152)
303 PF11841 DUF3361: Domain of un 24.7 6.2E+02 0.013 28.3 10.6 118 872-996 36-157 (160)
304 PF01417 ENTH: ENTH domain; I 24.2 3.3E+02 0.0071 28.8 8.4 98 860-963 10-119 (125)
305 KOG2759 Vacuolar H+-ATPase V1 23.9 1.3E+03 0.027 29.8 14.1 161 1192-1358 244-436 (442)
306 KOG2038 CAATT-binding transcri 23.8 2.1E+03 0.045 30.0 19.8 312 604-968 233-608 (988)
307 PF09324 DUF1981: Domain of un 23.7 2.5E+02 0.0054 27.8 6.8 68 894-961 16-84 (86)
308 KOG1848 Uncharacterized conser 23.7 1.2E+03 0.026 34.4 15.1 155 321-475 924-1133(1610)
309 cd00256 VATPase_H VATPase_H, r 23.6 72 0.0016 41.1 3.8 65 719-787 355-424 (429)
310 KOG3961 Uncharacterized conser 23.5 1.7E+02 0.0036 33.8 6.0 91 288-380 117-212 (262)
311 PF03965 Penicillinase_R: Peni 23.5 86 0.0019 32.7 3.8 45 1639-1707 5-49 (115)
312 COG5537 IRR1 Cohesin [Cell div 22.2 9.2E+02 0.02 32.2 12.7 142 599-748 273-426 (740)
313 TIGR02289 M3_not_pepF oligoend 21.5 1.2E+03 0.026 31.4 14.9 36 1328-1363 141-176 (549)
314 PF01417 ENTH: ENTH domain; I 21.1 4.3E+02 0.0093 27.9 8.5 72 400-472 36-119 (125)
315 PF12612 TFCD_C: Tubulin foldi 20.8 7.8E+02 0.017 28.1 11.2 120 362-488 3-132 (193)
316 KOG2753 Uncharacterized conser 20.6 1.7E+03 0.037 27.8 16.6 94 378-474 118-216 (378)
317 KOG3678 SARM protein (with ste 20.1 5.9E+02 0.013 32.5 10.1 136 336-473 193-335 (832)
No 1
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-51 Score=531.12 Aligned_cols=745 Identities=25% Similarity=0.300 Sum_probs=568.9
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHH
Q 000159 607 VGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLC 685 (2013)
Q Consensus 607 ~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L-~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~i 685 (2013)
...+.+..|+.|.++...+...+......+.....+++.. ...++|+..|++|..-.+.++..-.
T Consensus 11 ~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~-------------- 76 (815)
T KOG1820|consen 11 DSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKR-------------- 76 (815)
T ss_pred chhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhccccc--------------
Confidence 3347888999999999999988877554443334444433 3335677788777654444443211
Q ss_pred HHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHh
Q 000159 686 LLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKD 765 (2013)
Q Consensus 686 l~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~ 765 (2013)
..+.| ...+++..+....+...+++.++.. ...|.||..+.++..+..++.+||...+.++.+++.+..
T Consensus 77 -----~~~~~-----~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~ 145 (815)
T KOG1820|consen 77 -----VNIRD-----TKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGS 145 (815)
T ss_pred -----ccccC-----cchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcc
Confidence 11222 2222333333333445555555555 368999999999999999999999987777888876665
Q ss_pred cCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhh-hccHHHHHHHHHHHhhCCCC----CCCC-----------------
Q 000159 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVV----------------- 823 (2013)
Q Consensus 766 ~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~-~lkp~ll~~Le~ef~k~~~~----~~p~----------------- 823 (2013)
+ . +.+||.++.++++.+|++.|..+..++. .-.+.++..+...+.+.... ..+.
T Consensus 146 l-~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~ 221 (815)
T KOG1820|consen 146 L-A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQL 221 (815)
T ss_pred c-c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcc
Confidence 4 3 8899999999999999999998877653 22334444444443332210 0000
Q ss_pred --CcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000159 824 --PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (2013)
Q Consensus 824 --p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~ 901 (2013)
+.++.+...+......+..|.+||+||++++++.|...+.|++||.|+||++.+..++.+....+....++.+...++
T Consensus 222 ~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 222 EKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred cccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 000000000000001234588999999999999999999999999999999999999997543455565678888889
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000159 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2013)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2013)
.++.|+|.+|+..|+.+|+.||.+||..|.+|+...+|.|+.+++|+|+.+|+++..|+++|+..+++..+.+.|.+++.
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALK 381 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHhccCCCC----CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000159 982 DAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (2013)
Q Consensus 982 ~~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~ 1057 (2013)
++ ||+.|.+++.|+.+++..++.. ..+..+++.+++..+|++.+||++|..++.++|+++|++.+.+++.++++
T Consensus 382 ~k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 382 GK--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred CC--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 87 6999999999999999988742 34566677799999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhc
Q 000159 1058 PALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL 1132 (2013)
Q Consensus 1058 ~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (2013)
.....+.+.+.+.-.....+.+++++..+.....+..++ ......+++...|.+.+...+ ++..++ ....+.+
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~-~~~~~~-~~~~~~~ 537 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANS-SRKIPE-AAEAPKL 537 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCccccccc-ccCCcc-hhhcccc
Confidence 644444444433211111222222221110000000000 000000111111111111100 001111 1111211
Q ss_pred ccCCCChHHHh----hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHH
Q 000159 1133 NVKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV 1208 (2013)
Q Consensus 1133 ~~~~~~k~~R~----~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~ 1208 (2013)
.+..+++|. +..+.+|++..+..+..+. |...++......||+.||+.|.++++.++.....+..++.++
T Consensus 538 --~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ 611 (815)
T KOG1820|consen 538 --QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSI 611 (815)
T ss_pred --ccccccchhhhhhhhccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchH
Confidence 344566665 4667889998877665544 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccC
Q 000159 1209 LDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS 1288 (2013)
Q Consensus 1209 lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v~p 1288 (2013)
.|++++|+++||+|+|+.+..+.++++...|..+...++.++..|...|.|++..+.|..++.+++.++.+.+....++.
T Consensus 612 ~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s 691 (815)
T KOG1820|consen 612 QDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLS 691 (815)
T ss_pred HhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHHH
Q 000159 1289 ATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 1368 (2013)
Q Consensus 1289 ~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~ 1368 (2013)
+.+..|++.+++..||.++|.+|++.+..++..-|.....-.+.+..++....++|..+|+++.+++...|.+.|+.+|+
T Consensus 692 ~~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (815)
T KOG1820|consen 692 VLMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWK 771 (815)
T ss_pred ccccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHH
Confidence 99999999999999999999999999999999999876445567799999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHhHHHHHHhhhh
Q 000159 1369 YVGKLTDAQKSMLDDRFKWKVR 1390 (2013)
Q Consensus 1369 ~vg~Ls~~~~s~l~er~kr~~~ 1390 (2013)
+.+.+.+.++++++.+|++..+
T Consensus 772 ~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 772 ISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred HHHHhhHHHhhhHHHhcCcccc
Confidence 9999999999999999998654
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-41 Score=439.35 Aligned_cols=753 Identities=19% Similarity=0.230 Sum_probs=499.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hHHHHHHHH
Q 000159 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVCDAI 98 (2013)
Q Consensus 20 l~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~-~~~~v~~~L 98 (2013)
+.++.|+.|.++|.. ++.|+|...|+.+ .++..|....+..... -....+-..
T Consensus 14 l~~~~w~~~~~~~~q-------------------------l~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~~ 67 (815)
T KOG1820|consen 14 LCSQSWKNRLEAWKQ-------------------------LLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLSF 67 (815)
T ss_pred hhhhhhhhhHHHHHH-------------------------HhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeeccc
Confidence 777888888777653 5567788999999 8888888776542221 122234445
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhh
Q 000159 99 AAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177 (2013)
Q Consensus 99 veK~l~-~k~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll 177 (2013)
.++||. -++.+++...++++.+...+..+.+++.+...+.-|.||.+++++..+..++.+||...++++.+++.+..++
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~ 147 (815)
T KOG1820|consen 68 GLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA 147 (815)
T ss_pred hhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc
Confidence 678887 4788899999988888777888999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC-CCCCccchhhhhHhhhhhccccCCCC
Q 000159 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGP 256 (2013)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~-~~P~R~~rs~~~~~~~~ea~~~~~g~ 256 (2013)
|++||.++..++++||||+|.. ++.+++..-.+.++.++...+.+.... ....|..-+.+..........+..+.
T Consensus 148 ---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~ 223 (815)
T KOG1820|consen 148 ---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEK 223 (815)
T ss_pred ---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccc
Confidence 9999999999999999999985 556655444444444444443332211 11111111111000000000000000
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHH
Q 000159 257 GPS--EESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKK 332 (2013)
Q Consensus 257 ~~~--~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pk--i~~~~~~~l~~~L~k 332 (2013)
... ..........+|.||+.+++||+++++ .+|...+.+++|++|+|||+.+..++..++ +..+.++.+...++.
T Consensus 224 ~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 224 PERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred cccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 000 001111122278999999999999999 699999999999999999999999887666 444555666667777
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000159 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (2013)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l 412 (2013)
+..|+|++|+..|++||+.||.+||..|.+|+..++|.+|+++||+|..+++++..|+++++.. +++.++++.|..++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEAL 380 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHh
Confidence 7779999999999999999999999999999999999999999999999999999999999984 89999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHH
Q 000159 413 KNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDV 491 (2013)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~ 491 (2013)
++|||++|.+|..|+.+++...++.. ....++.++|.+++..+|++++||.||.++++++++++|++.++.++..+++.
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 99999999999999999999887432 23557999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccccccccccCCCCC-CCCCCCCCCCCCCCCCCCC--C
Q 000159 492 RRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKK--D 567 (2013)
Q Consensus 492 ~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~s~~~~~~P-~~~~~~~~k~~~~k~~~~~--~ 567 (2013)
-+..+.|.+...-.......+...++. +....+. .++..........++ ++.+|....... ++...+ .
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~-~~~~~~~~~ 532 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAPD-------PQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSAN-SSRKIPEAA 532 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCCC-------ccccccceecccccccCCCCCCCccccCCCcccccc-cccCCcchh
Confidence 444455544321000000000000110 0000000 000000000000000 000000000000 000000 0
Q ss_pred CCCCCcCC-cCCCCCC-----CCCCC-CCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhc-cCcchHH
Q 000159 568 GSGKQETS-KLTEAPE-----DVEPS-EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSV 639 (2013)
Q Consensus 568 ~~~~~~~s-~~~~~~~-----~~~~~-~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~-~~~~~~~ 639 (2013)
..+....+ +...... .+... ....++..+.....++......+.+.+.+.-.++++.+...-.+. .......
T Consensus 533 ~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~ 612 (815)
T KOG1820|consen 533 EAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQ 612 (815)
T ss_pred hccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHH
Confidence 00000000 0000000 00000 112244443344556677788999999999999999887554432 2222233
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC----CchhhHHHHHHHHHhhhcChh--hhHHHHHHHHHHHhhh
Q 000159 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAV 713 (2013)
Q Consensus 640 ~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~----~~~~~~~~il~~LveKlgD~K--~r~~a~e~L~~l~e~~ 713 (2013)
..++.|+.. ++.|+|..+....++++......... ..........+-+..+.|..+ .+..-..+.....+..
T Consensus 613 ~~~l~~~~l--r~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~ 690 (815)
T KOG1820|consen 613 DLLLEWLVL--RFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVL 690 (815)
T ss_pred hhhhHHHHH--HhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhc
Confidence 456677653 58899999998888887765543211 000000111122222333321 2333333444445555
Q ss_pred ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChh
Q 000159 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (2013)
Q Consensus 714 ~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~ 793 (2013)
+.......+.+.+ ..++-.+|.+++..+..++..-|...+....+....... ..+.+..+|.++..++...|.+.|+.
T Consensus 691 s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (815)
T KOG1820|consen 691 SVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPFDFLPDP 768 (815)
T ss_pred cccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhccccc-ccccchhhhhhhhcccccccccccch
Confidence 5555666666665 678888999999888887776666533222233333333 67778999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHhhCC
Q 000159 794 IKGFLADVKPALLSALDAEYEKNP 817 (2013)
Q Consensus 794 l~~~L~~lkp~ll~~Le~ef~k~~ 817 (2013)
...+.....+.+...++..|.+-.
T Consensus 769 ~~~~~~~~~~~~~s~~~~~~~~~~ 792 (815)
T KOG1820|consen 769 SWKISILQADTDKSRIEKMFPKER 792 (815)
T ss_pred HHHHHHHhhHHHhhhHHHhcCccc
Confidence 988888888999999999987653
No 3
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.96 E-value=1.3e-22 Score=251.90 Aligned_cols=842 Identities=15% Similarity=0.175 Sum_probs=539.4
Q ss_pred ChhhhccCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000159 15 PWEDRLLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (2013)
Q Consensus 15 pl~erl~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~ 93 (2013)
-|-|++.+++-..|.+|..+|.+.++...- =++.-+.+...++-|.+.|+|..||..|+.|+..++.+.+.. ....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHH
Confidence 578999999999999999999999986311 012234556778889999999999999999999999877653 4667
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHhhh------hhhhHHHHHHHHhhcCChh------hHHHHHHHHHHHHHHhC
Q 000159 94 VCDAIAAKCLTGRPKTVEKA-QAVFMLWVELE------AVDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFG 160 (2013)
Q Consensus 94 v~~~LveK~l~~k~~~k~~A-~~~ll~~~E~~------~~~~v~~~L~~~~~~KnpK------v~~~~l~~L~~~l~~fG 160 (2013)
++..|+.+.++++.+.|+.+ +.+.+...++. -...|+..+++.+..-+.+ +..+++.++...+.+||
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 88888888888899999886 88888888874 1346788888877766665 89999999999999999
Q ss_pred CCCcChh-HHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhH---HHhhhC-hHHHHHHHHHHHHh---c---CC
Q 000159 161 AKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKM-RDTMKKELEVELVN---V---SG 229 (2013)
Q Consensus 161 ~~~i~~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~---~l~~~L-k~~q~keLe~~f~k---~---~~ 229 (2013)
.-..+.. .+++.+..-+......||+.|+.+++.+..+++.++... .+.++| ++.|..++...+.- + .|
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9776764 588999999999999999999999999998888654322 222344 34444444433222 1 11
Q ss_pred C--------CCCC--ccchhhh--hHhhhh------hc-----cccCC----------------CCCCCCCCCCCCCCCC
Q 000159 230 T--------ARPT--RKIRAEQ--DKELGQ------EL-----ISEDV----------------GPGPSEESTADVPPEI 270 (2013)
Q Consensus 230 ~--------~~P~--R~~rs~~--~~~~~~------ea-----~~~~~----------------g~~~~~~~~~~~~~~i 270 (2013)
. ..|. .|..+.. .++..+ |+ |.+.. .++...+ .+++ -
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd-~~eD---e 321 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD-TEED---E 321 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC-Cccc---h
Confidence 1 1110 0110000 011000 00 11100 0010000 0000 0
Q ss_pred CCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHH
Q 000159 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349 (2013)
Q Consensus 271 D~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l 349 (2013)
|....-|..| -..++-|+..++-.|+.|++|++.+.+++ +...+.+.-|..+.+.|..+++|-.-+|....+.+.
T Consensus 322 d~~~~ed~eD----de~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 322 DAMFLEDEED----DEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAY 397 (1233)
T ss_pred hhhhhhcccc----chhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHH
Confidence 0000001011 00125677788999999999999999976 566677777889999999999966666777777776
Q ss_pred HHHHHHhhh----------------c-----chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--c--CCChHhH
Q 000159 350 GNLARGLRT----------------H-----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--G--CLNLVDV 404 (2013)
Q Consensus 350 ~~La~~L~~----------------~-----f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~--~--~~~l~~i 404 (2013)
-.+.+..+. . ....+..++..+-+.+++++...+..+..-|..++.. + ..++..+
T Consensus 398 i~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~sl 477 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSL 477 (1233)
T ss_pred HHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhccccc
Confidence 666543331 1 2234566777788888888888888888888888765 1 2345667
Q ss_pred HHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHH
Q 000159 405 VEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (2013)
Q Consensus 405 l~~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~ 482 (2013)
+|.|.-.+.+|+ .+.|..++.|+..++..+++..|.++++.+.|.+..++.|+.+.|-..|.-....+.+++...
T Consensus 478 vpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl--- 554 (1233)
T KOG1824|consen 478 VPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL--- 554 (1233)
T ss_pred chhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc---
Confidence 888888888777 689999999999999999999999999999999999999999998555554444444333210
Q ss_pred HHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000159 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (2013)
Q Consensus 483 ~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~ 562 (2013)
+ |+.
T Consensus 555 ------~---------------------------------------------------------~~~------------- 558 (1233)
T KOG1824|consen 555 ------Q---------------------------------------------------------PPS------------- 558 (1233)
T ss_pred ------C---------------------------------------------------------CCc-------------
Confidence 0 000
Q ss_pred CCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 000159 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEIL 642 (2013)
Q Consensus 563 ~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~l 642 (2013)
+ .+. ++ ++.. -....
T Consensus 559 -----~---------~d~---------~~-~v~~-----------------------------------------m~~~t 573 (1233)
T KOG1824|consen 559 -----S---------FDA---------SP-YVKT-----------------------------------------MYDCT 573 (1233)
T ss_pred -----c---------CCC---------Ch-hHHH-----------------------------------------HHHHH
Confidence 0 000 00 0000 01112
Q ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhh---hChhHHH
Q 000159 643 VRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA---VGPGFIF 719 (2013)
Q Consensus 643 v~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~---~~~~~Vl 719 (2013)
++-|. -+|+...|.+.++.++..++..++++.......+++-+++|+++.-+|-.|.++|+.++.. ++...++
T Consensus 574 l~rL~----a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l 649 (1233)
T KOG1824|consen 574 LQRLK----ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVL 649 (1233)
T ss_pred HHHHh----cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhH
Confidence 22221 2677888999999999998888888888888999999999999999999999999999874 3333444
Q ss_pred HHHHHHhhh--CCC-hhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChh
Q 000159 720 ERLYKIMKD--HKN-PKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (2013)
Q Consensus 720 ~~L~~~l~~--~Kn-pKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~ 793 (2013)
..+++.+.+ -|| -+.+.+++..+..+++.+|.. +. +..++..+..+ +..++..|-+.|..++.++...-...
T Consensus 650 ~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~-~~~~~~e~vL~el~~L-isesdlhvt~~a~~~L~tl~~~~ps~ 727 (1233)
T KOG1824|consen 650 TEILPELASFLRKNQRALRLATLTALDKLVKNYSDS-IPAELLEAVLVELPPL-ISESDLHVTQLAVAFLTTLAIIQPSS 727 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 444443311 243 456889999999999998753 33 34566777777 88889999999999999887654443
Q ss_pred HHhhhhhccHHHHHHHH-------------HHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHH
Q 000159 794 IKGFLADVKPALLSALD-------------AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (2013)
Q Consensus 794 l~~~L~~lkp~ll~~Le-------------~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~ 860 (2013)
+....+.+-+.++..+. .-|+.+.....+ .++-..+...++...++
T Consensus 728 l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~---------------------~l~y~~l~s~lt~PV~~ 786 (1233)
T KOG1824|consen 728 LLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEP---------------------DLDYISLLSLLTAPVYE 786 (1233)
T ss_pred HHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCC---------------------CccHHHHHHHHcCCccc
Confidence 33222222222222222 122222111100 01100011111111111
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHH
Q 000159 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2013)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL--~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (2013)
.-.|. .-+.|.-.+..++..- ....+.--..+..-|..-+ ..+|..++..|+-.+|++....+.. +...+.
T Consensus 787 ~~~~~---l~kqa~~siA~cvA~L-t~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~ 859 (1233)
T KOG1824|consen 787 QVTDG---LHKQAYYSIAKCVAAL-TCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS---PQNELK 859 (1233)
T ss_pred ccccc---hhHHHHHHHHHHHHHH-HHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC---cchhhH
Confidence 11221 1223333333332210 1111211123333333333 3556677788888888876543322 234555
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHH-HHHHhccCCCC---CChhhhH
Q 000159 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW-LSKQLTGLSGF---PDAAHLL 1014 (2013)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~-L~~~l~~~~~~---~~~~~ll 1014 (2013)
..++++|+.....|+.||..||+.+.- -.+..++|.|.+.+.+. | -|++++.+ +.+++...... +.+..+-
T Consensus 860 ~~iieaf~sp~edvksAAs~ALGsl~v-gnl~~yLpfil~qi~sq---p-k~QyLLLhSlkevi~~~svd~~~~~v~~IW 934 (1233)
T KOG1824|consen 860 DTIIEAFNSPSEDVKSAASYALGSLAV-GNLPKYLPFILEQIESQ---P-KRQYLLLHSLKEVIVSASVDGLKPYVEKIW 934 (1233)
T ss_pred HHHHHHcCCChHHHHHHHHHHhhhhhc-CchHhHHHHHHHHHhcc---h-HhHHHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 688999999999999999999998742 23678999998888754 2 37777666 66666544332 2334444
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHH
Q 000159 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (2013)
Q Consensus 1015 ~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~ 1051 (2013)
.-+.+.++.....+|....+||+.+.-. .++.+.+.
T Consensus 935 ~lL~k~cE~~eegtR~vvAECLGkL~l~-epesLlpk 970 (1233)
T KOG1824|consen 935 ALLFKHCECAEEGTRNVVAECLGKLVLI-EPESLLPK 970 (1233)
T ss_pred HHHHHhcccchhhhHHHHHHHhhhHHhC-ChHHHHHH
Confidence 4466666666667799999999876543 44444444
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.1e-17 Score=210.62 Aligned_cols=834 Identities=17% Similarity=0.188 Sum_probs=505.8
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-hHh
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ 366 (2013)
.+...+-+.+=..|++|-+.+..+...++ +...|...+. -.+..++..|+-.+..+....=+..... -..
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 34556677777889999999988765443 5667777777 7788899999888888887755554433 345
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000159 367 LLPVLLEKL-KEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (2013)
Q Consensus 367 llp~LL~kl-kdkk~~V~~aa~~aL~ai~~~--~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (2013)
+-..||..+ +|..+.||.+....+..++++ .+ ..+++++.+..+.++.|++.|+.++..|..+....+. .+.+++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~ 157 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHL 157 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhH
Confidence 566666665 899999999999999999988 23 5788999999999999999999999999887665543 356788
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-chhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000159 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2013)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~G-e~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2013)
+.+.+.+.+|+.|+...||-+|.++++++..... +....+.+..+-|....-+.+.+...
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~------------------- 218 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG------------------- 218 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc-------------------
Confidence 9999999999999999999999999999998885 33333333333332222222221100
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000159 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2013)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l 602 (2013)
.++
T Consensus 219 --------------------------------------------------------------------d~~--------- 221 (1075)
T KOG2171|consen 219 --------------------------------------------------------------------DDD--------- 221 (1075)
T ss_pred --------------------------------------------------------------------chH---------
Confidence 000
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC----
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF---- 677 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~---- 677 (2013)
.=..+++.|.+++...... .+....++.+....-+=++-+-.+++.+|+++..+++..+..
T Consensus 222 --------------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~ 287 (1075)
T KOG2171|consen 222 --------------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKL 287 (1075)
T ss_pred --------------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc
Confidence 0011222223333322111 112222222211111124556678899999999988875432
Q ss_pred ---chhhHHHHHHHHHhhhcCh--------------hhhHHHHHHHHHHHhhhChhHHHHHHHHHh---hhCCChhHHHH
Q 000159 678 ---PKKCVVLCLLGISERVADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSE 737 (2013)
Q Consensus 678 ---~~~~~~~il~~LveKlgD~--------------K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l---~~~KnpKv~~~ 737 (2013)
....+..++-...+-..|. -....|.++|..++-..++..|++.+++.+ ..+.+||-|.+
T Consensus 288 ~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A 367 (1075)
T KOG2171|consen 288 ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA 367 (1075)
T ss_pred hhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence 2233333333333333441 146778999999999999999988888754 56899999999
Q ss_pred HHHHHHHHHHHhCCCC-CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh-hhccHHHHHHHHHHHhh
Q 000159 738 GILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEK 815 (2013)
Q Consensus 738 ~l~~L~~li~~fG~~~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k 815 (2013)
++..|+.+.+..+-.- -++..+++.+... |.|++|.||.+|.+++|.|...+++.+..+. +.++|++
T Consensus 368 aL~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL---------- 436 (1075)
T KOG2171|consen 368 ALLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPAL---------- 436 (1075)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHH----------
Confidence 9999999988433110 1467788888885 9999999999999999999988888776543 3333333
Q ss_pred CCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccc-cCCCCCh
Q 000159 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANK-RIQPAGT 893 (2013)
Q Consensus 816 ~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~-~Wk~R~eale~l~~il~~a~~-~I~~~~~ 893 (2013)
+..+.|. +-++-..|.-.+-...+++.+ .|.|+ +
T Consensus 437 -------------------------------------------~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-L 472 (1075)
T KOG2171|consen 437 -------------------------------------------IALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-L 472 (1075)
T ss_pred -------------------------------------------HHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-H
Confidence 3333333 345555565566666665533 45555 5
Q ss_pred hhHHH-HHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHhcC
Q 000159 894 GELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK----KHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 894 ~eL~~-~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k----~~Vr~aa~~aL~~i~~~~g 968 (2013)
..|+. .|...+....+.|+.+++..|+.+|.+.+..|.+|.+.++|.+.+.|+..+ ..+|...++|++.+...+|
T Consensus 473 d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 473 DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence 88888 444445666788999999999999999999999999999999999997544 4689999999999999999
Q ss_pred chhhHHHHHHHHh---cC-----CCChhhHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhc-CCCChHHHHHHHHHHH
Q 000159 969 LDKMVPYVTTALT---DA-----KLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAM-TDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 969 l~~ll~~l~~~L~---~~-----k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L-~D~~~dVR~aA~~~L~ 1037 (2013)
-+++.|...+.++ .- ....-.|...+...++.-.-++.. +-+...++|+++.. .|..-..
T Consensus 553 ke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~--------- 623 (1075)
T KOG2171|consen 553 KEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL--------- 623 (1075)
T ss_pred hhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC---------
Confidence 7777774322221 10 001123444333332222222221 12233444444432 1221110
Q ss_pred HHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCc
Q 000159 1038 EILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPES 1117 (2013)
Q Consensus 1038 ~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~ 1117 (2013)
++++..... ..++.-.. .+-.+. . ..+ +-+.+.
T Consensus 624 -----~d~~d~e~~-~~~~~~e~------~~~~~~------------------e--~~~-----------I~Tsvl---- 656 (1075)
T KOG2171|consen 624 -----SDEEDEEEE-QDLDGWEV------VELGDK------------------E--NIG-----------IRTSVL---- 656 (1075)
T ss_pred -----cCchhhhhc-cccccchh------hccCCc------------------e--eee-----------eeehhH----
Confidence 022222111 11111000 000000 0 000 000000
Q ss_pred ccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHh
Q 000159 1118 IMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKA 1197 (2013)
Q Consensus 1118 ~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~ 1197 (2013)
.+-+.....+-.+ -...|-.|. .++|+-...| +....|.-.-..|..|++.|-..
T Consensus 657 ----~eK~~A~~~Lv~~----------a~~lk~~F~----pYve~v~~l~-------v~~l~f~fhdgVR~aa~~~~p~l 711 (1075)
T KOG2171|consen 657 ----DEKETACEALGEY----------AKELKEAFA----PYVEQVVELM-------VPLLKFYFHDGVRKAAAESMPQL 711 (1075)
T ss_pred ----HHHHHHHHHHHHH----------HHhhhhhhh----hHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHH
Confidence 0000000000000 001122233 2222221111 22233322223455555555443
Q ss_pred c-------ccChhhHHHHHHHHHHHHHHhh-cCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh----
Q 000159 1198 L-------PSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS---- 1265 (2013)
Q Consensus 1198 l-------~~~~~~~i~~lDlllk~~~lr~-~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~---- 1265 (2013)
+ ...+..+....+-+++-+..-+ .+.-+.|+..+|+-+...+..+.... |.+.+...++-.+..++
T Consensus 712 l~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~--L~~~~~~~~~~~~~~~~l~~~ 789 (1075)
T KOG2171|consen 712 LTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNC--LNEDGLEALLGGLLAQLLQHF 789 (1075)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCccc--CCcHHHHHHHHHHHHHHHHHH
Confidence 3 2344445554555555554443 45688999999999998888877653 77777777776664443
Q ss_pred ---cC---------ChHHHHHHHH----HHHHHHhhcc-------Cc------cccHHHHHhhhcCCChhhHHHHHHHHH
Q 000159 1266 ---GH---------NIEKVREKMR----ELTKQIVNFY-------SA------TKTLPYILEGLRSKNNRTRIECVDLVG 1316 (2013)
Q Consensus 1266 ---Gd---------~k~~vr~~v~----~il~~i~~v~-------p~------skvf~~l~~gl~sKN~r~R~ecl~~l~ 1316 (2013)
+| -.+..++.+. .++..++.+. -. ..++|++..-+++++.--|+=.+..++
T Consensus 790 ~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~ 869 (1075)
T KOG2171|consen 790 KRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFD 869 (1075)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 22 1111222222 1333333322 11 257888777777766555888888899
Q ss_pred HHHHhhCCCcccc-cchHHHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCHHHHHh
Q 000159 1317 FLIDHHGAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSM 1380 (2013)
Q Consensus 1317 ~li~~~g~~~~~~-~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~Ls~~~~s~ 1380 (2013)
.+|+..|-..... ..-++.+...+.|.+++||++|---++.+-.+.|+.--..+..+.+..-.+
T Consensus 870 d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 870 DLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred HHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 9999988753211 223599999999999999999999999999999988333333333433333
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.3e-15 Score=197.76 Aligned_cols=878 Identities=16% Similarity=0.167 Sum_probs=469.8
Q ss_pred HHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhh--
Q 000159 49 RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE-- 124 (2013)
Q Consensus 49 ~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~--~k~~~k~~A~~~ll~~~E~~-- 124 (2013)
+|.+....+-..+++.|+.-+|.|+-.|..+....+.....+..++. .|..+|++ +.+ +|-.|...+..|++.-
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~-~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL-RLFSQTMTDPSSP-VRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH-HHHHHhccCCcch-HHHHHHHHHHHHHHHhcc
Confidence 57777777888999999999999999999998887665555555554 56678887 455 9988887777777652
Q ss_pred hhh--hHHHHHHH--------HhhcCChhhHHHHHHHHHHHHHHhCCCCcC--hhHHHHhhhhhhcCC--ChHHHHHHHH
Q 000159 125 AVD--VFLDVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKG 190 (2013)
Q Consensus 125 ~~~--~v~~~L~~--------~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~--~k~il~~l~~ll~~~--d~~VR~~a~~ 190 (2013)
+.. .-+..+++ ....-+-+....++.+|.+++...+. .+. +..++....++.++. |..+|..|..
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 121 11222333 23445556678888888888887655 332 345666666777766 7889999999
Q ss_pred HHHHHHHhhCCchhhH--HHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCC-CCCCCCCCCC
Q 000159 191 LTLELCRWIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG-PSEESTADVP 267 (2013)
Q Consensus 191 l~~ely~~lG~~~l~~--~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~-~~~~~~~~~~ 267 (2013)
+++.+.++- +...|. .+...|-++.++.. ++ ...+. -..++..+++
T Consensus 272 ~ivs~~e~A-p~~~k~~~~~~~~lv~~~l~~m-----------te-------------------~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 272 FLVSLSEYA-PAMCKKLALLGHTLVPVLLAMM-----------TE-------------------EEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHhh-HHHhhhchhhhccHHHHHHHhc-----------CC-------------------cccchhhccccccccc
Confidence 999999882 111110 01111111111111 00 00000 0000000111
Q ss_pred CCCCCCCCC-----------CcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc
Q 000159 268 PEIDEYELV-----------DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT 335 (2013)
Q Consensus 268 ~~iD~~dl~-----------~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~l~~~L~k~l~ 335 (2013)
+.-++|... .+.-|+..+= +.+...+.+.+|++|+.||..|..+.. ..+...+.+..|++.+...+.
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~ 399 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN 399 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Confidence 112233221 2222332221 345556899999999999999999884 566666688999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH-HHHHHhcc-CcHHHHHHHHHHHHHHHHhcCCC------hHhHHH-
Q 000159 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP-VLLEKLKE-KKPTVAESLTQTLQAMHKAGCLN------LVDVVE- 406 (2013)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp-~LL~klkd-kk~~V~~aa~~aL~ai~~~~~~~------l~~il~- 406 (2013)
|.+..|+..||++|+.++..+.+.++.+....+| .|+..+.+ .++.|..++..|+..++.. |.. ++.+++
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~ 478 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEK 478 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987776666 55555544 3557888899999988876 422 344555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhCchhHH
Q 000159 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVGMRPLE 482 (2013)
Q Consensus 407 ~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~----~~VR~aA~~al~~l~~~~Ge~~~~ 482 (2013)
.+...+++.++.+|..++..|+.+..... ..|.+|.+.++|.+.++|...+ .++|-...+|++.+...+|.+.|.
T Consensus 479 ~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~ 557 (1075)
T KOG2171|consen 479 KLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFL 557 (1075)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 22334467889999999999998766544 3477899999999999985444 678888899999999999987777
Q ss_pred HHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000159 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (2013)
Q Consensus 483 ~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~ 562 (2013)
++...|-..... .. ++......|.. +.... .-+ ..-+-...-+.+--|.. -|+-.+....++
T Consensus 558 ~~a~eliqll~~----~~---~~~~~~dd~~~-------sy~~~--~wa-rmc~ilg~~F~p~L~~V-mppl~~ta~~~p 619 (1075)
T KOG2171|consen 558 PLAEELIQLLLE----LQ---GSDQDDDDPLR-------SYMIA--FWA-RMCRILGDDFAPFLPVV-MPPLLKTARLDP 619 (1075)
T ss_pred HhHHHHHHHHHh----hc---ccchhhccccH-------HHHHH--HHH-HHHHHhchhhHhHHHHH-hHHHHHhhccCC
Confidence 776654322111 10 11110000000 00000 000 00000000000000000 000000000000
Q ss_pred CCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHH-------hhhcCCCHHHHHHHHHHHHHHHHhccC-
Q 000159 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV-------GQLKSAVWKERLEAISSLRQQVEAVQN- 634 (2013)
Q Consensus 563 ~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~-------~~L~s~~Wk~Rl~ale~L~~~v~~~~~- 634 (2013)
...++.++.++...+..+-+.+ =++..+-.-++..|.+.|..+-.....
T Consensus 620 -----------------------~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~ 676 (1075)
T KOG2171|consen 620 -----------------------DVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEA 676 (1075)
T ss_pred -----------------------cccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhh
Confidence 0011111111111111111110 012222233334444444433322111
Q ss_pred cchHHHHHHHHHhcCCCCc-ccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhh
Q 000159 635 LDQSVEILVRLVCMLPGWS-EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713 (2013)
Q Consensus 635 ~~~~~~~lv~~L~~~pgl~-DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~ 713 (2013)
-.++.+-++..+. |.++ .-+--|+..+ ..++|.++...--.--+..+ .+..+
T Consensus 677 F~pYve~v~~l~v--~~l~f~fhdgVR~aa-------------------~~~~p~ll~~~~~A~~~~p~--~l~~l---- 729 (1075)
T KOG2171|consen 677 FAPYVEQVVELMV--PLLKFYFHDGVRKAA-------------------AESMPQLLTCALKACQGGPE--YLKQL---- 729 (1075)
T ss_pred hhhHHHHHHHHHH--HHHHhhhhhHHHHHH-------------------HHHHHHHHHHHHHHhccChH--HHHHH----
Confidence 0111111111000 0000 0001122222 23333333210000000000 00000
Q ss_pred ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChh
Q 000159 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (2013)
Q Consensus 714 ~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~ 793 (2013)
-+++++.++..+..-..+.+..+.++.+.+.++.+|...++...+-..+... + .. + ..-+..++..
T Consensus 730 -~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~-~--------~~---~-l~~~~~~~~r 795 (1075)
T KOG2171|consen 730 -WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGL-L--------AQ---L-LQHFKRMQDR 795 (1075)
T ss_pred -HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH-H--------HH---H-HHHHHHHHhh
Confidence 1234444445544456778889999999999999997655433322222111 0 00 0 0000000100
Q ss_pred H-HhhhhhccH-------HHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC
Q 000159 794 I-KGFLADVKP-------ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP 865 (2013)
Q Consensus 794 l-~~~L~~lkp-------~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~ 865 (2013)
. ..+-++... .+=+.|.+++.++.. +-++. .++ +..| ....+-|.+...+.++
T Consensus 796 ~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~-------~l~k~-------~k~--~f~p---~f~~~~p~iv~~l~~~ 856 (1075)
T KOG2171|consen 796 QEEDDEEDDDIEEEEDLDEQDAYLLDAISDILA-------ALAKA-------LKG--SFLP---FFENFLPLIVKLLKSK 856 (1075)
T ss_pred hhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHH-------HHHHH-------ccc--cccH---HHHHHHHHHHHHHhcC
Confidence 0 000000000 000011111111100 00000 000 0000 1222445556666666
Q ss_pred C-hHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHH
Q 000159 866 D-WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2013)
Q Consensus 866 ~-Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (2013)
+ |. |.=|+-.+.+++..+.+...++ +..+.+.+...+.|+.+-|++.|..-+|.+|.-.|..+.+.+...+|.++..
T Consensus 857 ~~~~-r~~av~~~~d~ie~~~~a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 857 KTVA-RQWAVCIFDDLIEGCGEASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred CcHH-HHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 4 77 9999999999998654444333 5778888899999999999999999999999999999999999999999988
Q ss_pred hCCCcH---HHHHHHHHHHHHHHH---hc----CchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC---C---C
Q 000159 945 LGDNKK---HMRECTLTVLDAWLA---AV----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---F---P 1008 (2013)
Q Consensus 945 L~D~k~---~Vr~aa~~aL~~i~~---~~----gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~---~ 1008 (2013)
+..... .-+.+..+++.++++ +. ..++++|.+...|-... +-+.-..+..+|...++.... . .
T Consensus 935 iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n~ 1013 (1075)
T KOG2171|consen 935 LQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNNQ 1013 (1075)
T ss_pred HcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCcc
Confidence 876443 344444455555544 33 25677776666654211 122334577778877776443 1 1
Q ss_pred ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHH
Q 000159 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1067 (2013)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l 1067 (2013)
.+..++.-+...+.+.+-+-|..+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1014 ~ip~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1014 NIPKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred cchHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 22333333444555554444444443333332222 345677788889999888887754
No 6
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.85 E-value=1.1e-20 Score=220.98 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=148.5
Q ss_pred cCcchhhhhhhccCCHHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHhcccCHHHHHHHHHHHHHHHHHhh
Q 000159 284 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (2013)
Q Consensus 284 kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~p--ki~~~~~~~l~----~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 357 (2013)
.+. +.|.+...+.+|++|.+||+.|+.++.+. ......|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444 56777789999999999999999988543 22222333333 366677889999999999999999999999
Q ss_pred hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-
Q 000159 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 435 (2013)
Q Consensus 358 ~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~i-l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~- 435 (2013)
..|++|+..++|.|+++++++|+.|++++..||.+++.+ |.....+ ++.+..++++|||.+|..++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999997 4314566 7888889999999999999999999999988
Q ss_pred -hhHHHH--hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHH
Q 000159 436 -KAAVLK--VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2013)
Q Consensus 436 -~~~l~~--~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki 496 (2013)
...+.. .++.+++.+.++++|++++||++|+++|+.+++++|++ ...++..||+..++.|
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H---------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccC
Confidence 333432 35889999999999999999999999999999999998 5778899999888766
No 7
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.73 E-value=4.8e-17 Score=190.36 Aligned_cols=208 Identities=21% Similarity=0.324 Sum_probs=143.7
Q ss_pred ccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC----hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhCh
Q 000159 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2013)
Q Consensus 853 ~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~----~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2013)
.+...|.+...+.+|+.|.+|++.|+.++.+....-.+.. +.+++..+...+.|.|..|+..||.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 3555676677889999999999999999985311111111 233345666788999999999999999999999999
Q ss_pred hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC
Q 000159 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2013)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l~~l-l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2013)
.|++|+..++|.++++++|+++.||++|..||.+++.+++ ...+ ++.+...+.++ ||.+|..++.|+...+..++.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 67777778777 799999999999999999882
Q ss_pred -CC------ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHH
Q 000159 1007 -FP------DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (2013)
Q Consensus 1007 -~~------~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i 1063 (2013)
.. .+..+++.+..++.|++++||++|..++..++.++|+.+ ...+..|+|..++.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 11 124566779999999999999999999999999999986 556799999887765
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.69 E-value=1.4e-11 Score=155.14 Aligned_cols=811 Identities=17% Similarity=0.197 Sum_probs=462.2
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hhhhhHHHHHHHHhhc-CChh
Q 000159 68 VQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---EAVDVFLDVMEKAIKN-KVAK 143 (2013)
Q Consensus 68 vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~---~~~~~v~~~L~~~~~~-KnpK 143 (2013)
++--.++.+..++.+.+.-....=..+...++...-..|..+|.+|+-++-.+.-. +...++++.|++++.+ -++-
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchH
Confidence 67777888888887766522222122343444442225899999997776655533 2346788999999875 4566
Q ss_pred hHHHHHHHHHHHHHHhCCCC-cChhHHHHhhhhhh---cCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHH
Q 000159 144 AVVPAIDVMFQALSEFGAKI-IPPKRILKMLPELF---DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKE 219 (2013)
Q Consensus 144 v~~~~l~~L~~~l~~fG~~~-i~~k~il~~l~~ll---~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~ke 219 (2013)
.+-.-+++|..+.+.-|... -.+..+++.+...+ +..|...|+.+.+.+..+.++...+ +-++. . .+ ...
T Consensus 229 ~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e-i~p~~-p---ei-~~l 302 (1233)
T KOG1824|consen 229 ATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE-ILPHV-P---EI-INL 302 (1233)
T ss_pred HHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh-hcccc-h---HH-HHH
Confidence 66677778877777655421 12445666776666 8889999999999999888888764 22222 1 11 111
Q ss_pred HHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccc----------------cc
Q 000159 220 LEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDI----------------LT 283 (2013)
Q Consensus 220 Le~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdI----------------l~ 283 (2013)
+-..+ .+. |- |. .+.+ +. ++....+ ++++++.-|.| .|..|+ .+
T Consensus 303 ~l~yi-sYD----PN-y~---yd~~-eD-------ed~~~~e-d~eDde~~deY--sDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 303 CLSYI-SYD----PN-YN---YDTE-ED-------EDAMFLE-DEEDDEQDDEY--SDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHh-ccC----CC-CC---CCCc-cc-------hhhhhhh-ccccchhcccc--ccccchhHHHHHHHHHHHHHHHhc
Confidence 11111 111 10 00 0000 00 0000000 00111111233 222232 11
Q ss_pred cCc-chhhhhhhcc---CCHHHHHHHHHH-----HHHHhc-CCCCC--------------C-------CChHHHHHHHHH
Q 000159 284 PLE-KSGFWEGVKA---TKWSERKDAVAE-----LTKLAS-TKRIA--------------P-------GDFTEVCRTLKK 332 (2013)
Q Consensus 284 kl~-~~~f~~~l~s---~kWkeR~eaL~~-----L~~l~~-~pki~--------------~-------~~~~~l~~~L~k 332 (2013)
..+ .++||..+.- ..++||.|.+.. ...++. .+... + +....++++|.+
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ 442 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQK 442 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHH
Confidence 111 1467666544 678888887664 223332 22111 0 122456777777
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHH--HHHHHHHHHH-HHHHhcC----CChHhHH
Q 000159 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQ-AMHKAGC----LNLVDVV 405 (2013)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~--V~~aa~~aL~-ai~~~~~----~~l~~il 405 (2013)
.+.+...+-...++..+..+...++....+|...++|++.-.|-|+... ..-.+...+- ++..++| ..++.+.
T Consensus 443 qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls 522 (1233)
T KOG1824|consen 443 QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALS 522 (1233)
T ss_pred HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhh
Confidence 7776666666777888999999999999999999999999999998653 2222222222 2333222 1234566
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhcCh----h--HHHHhhhhHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhC
Q 000159 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSK----A--AVLKVHKDYVPICMECL--NDGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 406 ~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~----~--~l~~~l~~l~p~l~k~l--~Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
+.+..+..+.-+++-.+++.....++....+ . ...++.+.+.....+.+ .|.|.+||+.|..|++.+...+|
T Consensus 523 ~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg 602 (1233)
T KOG1824|consen 523 PPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG 602 (1233)
T ss_pred hHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh
Confidence 6777888888899999988887776654321 1 12345566666666655 79999999999999999999999
Q ss_pred chhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCC
Q 000159 478 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (2013)
Q Consensus 478 e~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~ 557 (2013)
+. ...+++..-+.-.+++..-+-.. ++++.. +.+.
T Consensus 603 D~-l~~eL~~~L~il~eRl~nEiTRl----------------------------~AvkAl--t~Ia-------------- 637 (1233)
T KOG1824|consen 603 DF-LGNELPRTLPILLERLGNEITRL----------------------------TAVKAL--TLIA-------------- 637 (1233)
T ss_pred hh-hhhhhHHHHHHHHHHHhchhHHH----------------------------HHHHHH--HHHH--------------
Confidence 53 44444443333333332211000 000000 0000
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH-HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc
Q 000159 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636 (2013)
Q Consensus 558 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~-ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~ 636 (2013)
.+ +..++. +.+.+ +-+++...|...+-+.|++.+..+..+++......
T Consensus 638 ---------------------~S-----~l~i~l~~~l~~-----il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~ 686 (1233)
T KOG1824|consen 638 ---------------------MS-----PLDIDLSPVLTE-----ILPELASFLRKNQRALRLATLTALDKLVKNYSDSI 686 (1233)
T ss_pred ---------------------hc-----cceeehhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00 001110 11111 12566677777788889998888888887743322
Q ss_pred h--HHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhh
Q 000159 637 Q--SVEILVRLVCMLPG-WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713 (2013)
Q Consensus 637 ~--~~~~lv~~L~~~pg-l~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~ 713 (2013)
+ ..+.++. ..|+ +.|+..+|.+.++.++..++...+...-.....+++.++.-+..+-+...|..++..+.++.
T Consensus 687 ~~~~~e~vL~---el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~al 763 (1233)
T KOG1824|consen 687 PAELLEAVLV---ELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQAL 763 (1233)
T ss_pred cHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHH
Confidence 1 1233332 2233 68999999999999999988765543333445566666666555555555544444443321
Q ss_pred ----Chh----------------------------------------------HHHHHHHHHhhh-CCChhHHHHHHHHH
Q 000159 714 ----GPG----------------------------------------------FIFERLYKIMKD-HKNPKVLSEGILWM 742 (2013)
Q Consensus 714 ----~~~----------------------------------------------~Vl~~L~~~l~~-~KnpKv~~~~l~~L 742 (2013)
.++ .+...+...+.+ ..+..++.-++..+
T Consensus 764 V~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~Lsl 843 (1233)
T KOG1824|consen 764 VITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSL 843 (1233)
T ss_pred HhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhh
Confidence 010 011111111100 11222222233222
Q ss_pred HHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHH----------
Q 000159 743 VSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE---------- 812 (2013)
Q Consensus 743 ~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e---------- 812 (2013)
.++=..++. .....+-..+..+ |++++.+|+.||.-+||.+.. |. +..|| |-++.+|+.+
T Consensus 844 GElgr~~~~--s~~~e~~~~iiea-f~sp~edvksAAs~ALGsl~v--gn-l~~yL----pfil~qi~sqpk~QyLLLhS 913 (1233)
T KOG1824|consen 844 GELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSAASYALGSLAV--GN-LPKYL----PFILEQIESQPKRQYLLLHS 913 (1233)
T ss_pred hhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHHHHHHhhhhhc--Cc-hHhHH----HHHHHHHhcchHhHHHHHHH
Confidence 222221111 1123455556666 999999999999999998863 32 22232 3333333321
Q ss_pred HhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC
Q 000159 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (2013)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~ 892 (2013)
|..+-. +.+. +-..|.+ .+|..-|++.++...-=.|.--.|-++.++. .+
T Consensus 914 lkevi~----------~~sv---------d~~~~~v---~~IW~lL~k~cE~~eegtR~vvAECLGkL~l--------~e 963 (1233)
T KOG1824|consen 914 LKEVIV----------SASV---------DGLKPYV---EKIWALLFKHCECAEEGTRNVVAECLGKLVL--------IE 963 (1233)
T ss_pred HHHHHH----------Hhcc---------chhhhhH---HHHHHHHHHhcccchhhhHHHHHHHhhhHHh--------CC
Confidence 111100 0000 0001110 1133344555554443335544455554442 22
Q ss_pred hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--ch
Q 000159 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LD 970 (2013)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~ 970 (2013)
-..|.+.|+.++.-...+.+..++..+.....--.+.++.+.+..+..++..+.|....||+.|..+++..+.+=+ +.
T Consensus 964 pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen 964 PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHH
Confidence 3678999999997777777777777777666666778999999999999999999999999999999999988754 46
Q ss_pred hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
.++|.+.+.|.++ ..+|.+++.-. ++++- +.--|-.-|+|++|++|+-++...
T Consensus 1044 DllpeLLp~Ly~e---TkvrkelIreV-----eMGPF-----------KH~VDdgLd~RKaaFEcmytLLds 1096 (1233)
T KOG1824|consen 1044 DLLPELLPLLYSE---TKVRKELIREV-----EMGPF-----------KHTVDDGLDLRKAAFECMYTLLDS 1096 (1233)
T ss_pred HHHHHHHHHHHHh---hhhhHhhhhhh-----cccCc-----------cccccchHHHHHHHHHHHHHHHHh
Confidence 7888888888765 35677765432 12321 223566778999999999887643
No 9
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.2e-13 Score=170.86 Aligned_cols=515 Identities=17% Similarity=0.173 Sum_probs=335.2
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCC-ChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHH
Q 000159 138 KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ-DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (2013)
Q Consensus 138 ~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~-d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q 216 (2013)
.+..+.+...-+.+...++.+.|-+.+ ..+++..-..++|. +.++|+....+.+.+-+|+... +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v--~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV--LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH--HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 455666777777888888888888643 23333333333322 8899999888888887777531 12221
Q ss_pred HHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhcc
Q 000159 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (2013)
Q Consensus 217 ~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s 296 (2013)
.-++..++.. .+|....+..-..=.. +-... . +..+...++ +...+.++.
T Consensus 96 -~~~~~~~~~~---~tps~~~q~~~~~~l~---~~~~~---------------~---~~~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEEL---DTPSKSVQRAVSTCLP---PLVVL---------------S---KGLSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhc---CCCcHHHHHHHHHHhh---hHHHH---------------h---hccCHHHHH-----HHHHHHhcc
Confidence 1223333332 2343221111000000 00000 0 000111111 355667889
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHH-HHHHHHHHHHHhhhcchhhhHhHHHHHHHHh
Q 000159 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (2013)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~-A~~~l~~La~~L~~~f~~~~~~llp~LL~kl 375 (2013)
.+..+|+.|...+..+.++.-+....=..++..|.+.+.|.+....++ +..+.......||+.|+||...++|.+|.++
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999999998766665444578899999999998888885 7888888889999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000159 376 KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (2013)
Q Consensus 376 kdkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 454 (2013)
+|+-+.||+++..|.++++.. +..++..+++.++.++....|+.|..+++.+. ++..+.+.++..+++.++|.+.+.|
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHH
Confidence 999999999999999999985 23456788999999988889999999999999 6777777788889999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccc
Q 000159 455 NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (2013)
Q Consensus 455 ~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 534 (2013)
+|++++||++|.+|+-.+..++.+..+.++++.|- +++.. |+...+
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~~----------------- 350 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYTP----------------- 350 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccchH-----------------
Confidence 99999999999999999999999988888887643 33321 000000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCC
Q 000159 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (2013)
Q Consensus 535 ~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~ 614 (2013)
..--+ ++.+ ... +.+.+ ...+++-+-+...|..++
T Consensus 351 -e~~~~-L~~t------------------------------tFV---~~V~~----------psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 351 -ECLDS-LGAT------------------------------TFV---AEVDA----------PSLALMVPILKRGLAERS 385 (569)
T ss_pred -HHHHh-hcce------------------------------eee---eeecc----------hhHHHHHHHHHHHHhhcc
Confidence 00000 0000 000 01111 112233444455554443
Q ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc
Q 000159 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (2013)
Q Consensus 615 Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (2013)
.-.+..++..+.++ ..+++. +.-....+..++|++=..+-
T Consensus 386 t~~kr~t~~IidNm---------------------------------------~~LveD-p~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNM---------------------------------------CKLVED-PKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred chhhhhHHHHHHHH---------------------------------------HHhhcC-HHHHhhhHHHHhhHHHHHhc
Confidence 33333332222211 111110 01011234455565555555
Q ss_pred C--hhhhHHHHHHHHHHHhhhCh---hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHH-HHHHhcCC
Q 000159 695 D--IKTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI-DFCKDTGL 768 (2013)
Q Consensus 695 D--~K~r~~a~e~L~~l~e~~~~---~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li-~~l~~~gL 768 (2013)
| +-+|..+..+|..+.|..+. +.+.+.+...+...|.-+-+.+++..+..++...|.... ..++ +.+..+..
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANASS 503 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHHhh
Confidence 5 46788888888777775543 446666777666678888899999999999988877532 2222 22222213
Q ss_pred CCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhh
Q 000159 769 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2013)
Q Consensus 769 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2013)
...++.+|..-+.++..+-...|..+..|+.++.+.+++.+.+.-+.
T Consensus 504 ~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~ 550 (569)
T KOG1242|consen 504 VLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEK 550 (569)
T ss_pred ccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCc
Confidence 34456699999999888888888888999988888888887765444
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.1e-12 Score=153.03 Aligned_cols=692 Identities=15% Similarity=0.172 Sum_probs=421.2
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH----Hhhhcc-hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000159 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR----GLRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 322 ~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~----~L~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~ 396 (2013)
++.++++.|...+.....+....|+.++..+++ .+..++ .+....++|.+|.-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 456777777777763333356666666666654 344443 356889999999999999999999999999987643
Q ss_pred c----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 397 G----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 397 ~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
. ..+++.+++.+..--.+.+|.||...+..+..+++..+. .+.+++..++..+.....|.+.+|--.|++-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 1 134677778777666789999999999999988876543 46688899999999999999999988888877777
Q ss_pred HHH-hCchhHHHHHhhccHHHHHHHHH-----HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCC
Q 000159 473 AKS-VGMRPLERSIEKLDDVRRNKLSE-----MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (2013)
Q Consensus 473 ~~~-~Ge~~~~~~l~~Ld~~~~kki~e-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (2013)
+.. +-...+.+|+.+|-|.....+.- .+-+. .. +...++... ...|
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~---~e---------------------eD~~vpDre----eDIk 335 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN---NE---------------------EDESVPDRE----EDIK 335 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC---cc---------------------ccccCCchh----hhcc
Confidence 744 34557888998888765443310 00000 00 000000000 0111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCC---CCCCHHHHH----HHhhccCc--------HHHHhhhc
Q 000159 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP---SEMSLEEIE----SRLGSLIP--------ADTVGQLK 611 (2013)
Q Consensus 547 P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~---~~~S~ee~e----~~~~~~l~--------~~l~~~L~ 611 (2013)
|--. |+...+.+.-+ ....-+..++-.. ..+...-+. ..+..+++ |-+.+.|.
T Consensus 336 PRfh----------ksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 336 PRFH----------KSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred chhh----------hchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 1110 01111000000 0000000000000 111111122 22334444 45567889
Q ss_pred CCCHHHHHHHHHHHHHHHHh-ccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC-CCchhhHHHHHHHH
Q 000159 612 SAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGI 689 (2013)
Q Consensus 612 s~~Wk~Rl~ale~L~~~v~~-~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~L 689 (2013)
+.+|+.|.+|+-.|+.+-++ ++-..+....++.+|.. -+.|+-.-|+.-.+=+|..+..-.. .-....+..++.++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 99999999999999999888 55554555555555532 2455555555443333333332111 11234677888999
Q ss_pred HhhhcCh--hhhHHHHHHHHHHHhhhChhH------HHHHHHHHh--hhCCChhHHHHHHHHHHHHHHHhCCCC--C--C
Q 000159 690 SERVADI--KTRAHAMKCLTTFSEAVGPGF------IFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSH--L--K 755 (2013)
Q Consensus 690 veKlgD~--K~r~~a~e~L~~l~e~~~~~~------Vl~~L~~~l--~~~KnpKv~~~~l~~L~~li~~fG~~~--l--~ 755 (2013)
+.++-|. |++++|..++..+-|..+.+. ++.++.... -++||-.+...++..|+.-+...=.+. + -
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999885 689999999999988776543 444444432 147899999888888887774321110 1 1
Q ss_pred hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHH---HHhhCCCCCC-CCCccc-ccC
Q 000159 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA---EYEKNPFEGT-VVPKKT-VRA 830 (2013)
Q Consensus 756 ~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~---ef~k~~~~~~-p~p~R~-~r~ 830 (2013)
+.++++.-. . +.++++++-- -.+|+..+...+|..+.+|-..+=..-...|++ ...++..... ..|-|. +-.
T Consensus 562 mPPLi~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 562 MPPLIEKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred ccHHHHHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 223443333 3 7888887643 356777777778877776654443333333332 2233322110 112111 000
Q ss_pred cccc-----CCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc
Q 000159 831 SEST-----SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (2013)
Q Consensus 831 ~~~~-----~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~ 905 (2013)
+-+. ++-++..+.++.+.+ |..-++.-+.|.--.+|..+.-.++.+...+..++.|+. .+++..|..-++
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-ADFLPILGANLN 713 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHhhcCC
Confidence 0000 000111222333322 334556677888999999999999999987767888885 888888888888
Q ss_pred chhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHH
Q 000159 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVT 977 (2013)
Q Consensus 906 DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k--~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~ 977 (2013)
-.+..+.-.|+-.+|+||..+|.+..+|+..++-.++..++-++ ..+-+-..-+++.+...++ ++.++..-.
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc 793 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWC 793 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHH
Confidence 88889999999999999999999999999999998888776443 3344444445555544443 222222222
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000159 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (2013)
Q Consensus 978 ~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L 1055 (2013)
..|.+-. .-..|..++..+...+.-.+.. .++.-++. .+....+...++|....+.|..+...+|...-..++..+
T Consensus 794 ~sl~~i~-DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~-aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 794 TSLRNID-DNEEKESAFRGLCNMINVNPSGVVSSFIFICD-AIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHhcccc-cchhHHHHHHHHHHheeeCchhhhhhhHHHHH-HHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 3333211 1234666666665554433221 11111222 444556777999999999999999999998888889999
Q ss_pred ChHHHHHHHHH
Q 000159 1056 QGPALALILER 1066 (2013)
Q Consensus 1056 ~~~~~~~i~~~ 1066 (2013)
+|..+..+...
T Consensus 872 ~P~~~erl~a~ 882 (885)
T KOG2023|consen 872 PPPLKERLQAF 882 (885)
T ss_pred ChhHHHHHHHH
Confidence 99887766653
No 11
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.57 E-value=4.8e-13 Score=159.21 Aligned_cols=387 Identities=16% Similarity=0.175 Sum_probs=268.8
Q ss_pred hHHHHHHHHHhhhcCh---hhhHHHHHHHHHHHhhhChhHHHHHHHHHhhh---CCChhHHHHHHHHHHHHHHHhCCCC-
Q 000159 681 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSH- 753 (2013)
Q Consensus 681 ~~~~il~~LveKlgD~---K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~---~KnpKv~~~~l~~L~~li~~fG~~~- 753 (2013)
|...-+..++.|-|-. .++......+.++..++.+.+... +++.+.+ .-.||-+...+++++...+++...+
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 3444445555554431 345555667777788888777766 7776633 3479999999999999998876432
Q ss_pred -CChhhHHHHHHhcCCCC---C--cHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCC-CCCc-
Q 000159 754 -LKLKDLIDFCKDTGLQS---S--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPK- 825 (2013)
Q Consensus 754 -l~~k~li~~l~~~gL~~---~--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~-p~p~- 825 (2013)
.+.+..-.-..++ +.+ . ...+-....+.++.++-..-.+|...++.+.|......-+..+.+..+.. |.+.
T Consensus 139 s~~t~~~~~s~rkm-~~~~~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKM-FPWMFDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhc-cccccCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 3333322222222 222 1 12344555667777777777778888889999887777776665543221 1111
Q ss_pred -c--cc-cCcccc-----C--------CC---------CCC--------------CCCCCCCccc-ccccchHHHHhcCC
Q 000159 826 -K--TV-RASEST-----S--------SV---------SSG--------------GSDGLPREDI-SGKFTPTLVKSLES 864 (2013)
Q Consensus 826 -R--~~-r~~~~~-----~--------s~---------~~~--------------~~d~lpr~dI-s~~L~~~ll~~l~d 864 (2013)
+ +. +.+... + +. +.+ ..|.+++..+ ...+..+++.++++
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 00 000 0111222211 12234467777776
Q ss_pred C-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHH
Q 000159 865 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (2013)
Q Consensus 865 ~-~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (2013)
. .-..|++|+.+|..++.+....+|...|++|+..+...|.| .+......|+++|+.++++-...|..+.+..+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 6 78899999999999998766778888899999999999999 788999999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC---CChhhhHHHHH
Q 000159 943 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPAS 1018 (2013)
Q Consensus 943 ~~L~D~k~-~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~ 1018 (2013)
++-+|+.. .+|.|+..|+..+..+.++..+ ..|...+.+.. -..-.-+++++.+.++.+... .-+.++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~I-~~i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQCI-VNISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhHH-HHHhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999776 5666666677777777775554 33455544332 122356778999999887653 23566777799
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCC
Q 000159 1019 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (2013)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~ 1072 (2013)
++++..++.|||.|..||.+++..+|.+.|.+++..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998754
No 12
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=6.1e-11 Score=145.08 Aligned_cols=672 Identities=18% Similarity=0.202 Sum_probs=380.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhh----h-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh------hhhHHHHHH
Q 000159 66 APVQDKALDALIAYLKAADADA----G-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA------VDVFLDVME 134 (2013)
Q Consensus 66 ~~vqe~~leal~~~v~~~~~~~----~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~------~~~v~~~L~ 134 (2013)
...+|.|+.||....+-...-+ . +...-++|.+++-.-...|++|..|+.|+-.|+=+.. .+..++.|.
T Consensus 142 ~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lF 221 (885)
T KOG2023|consen 142 YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILF 221 (885)
T ss_pred ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHH
Confidence 3788999988887766543311 1 2234455555554333689999999999998885421 245555555
Q ss_pred HHhhcCChhhHHHHHHHHHHHHHHhCCCCcC-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHh-hCCchhhHHHhhhC
Q 000159 135 KAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKTILFEKM 212 (2013)
Q Consensus 135 ~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-lG~~~l~~~l~~~L 212 (2013)
..-+.-+|.|+......+.-+++----+.+| +..|+.++...-.+.|.+|-=||..+...+... +-++.+.+++ ++|
T Consensus 222 alanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l-~kl 300 (885)
T KOG2023|consen 222 ALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL-DKL 300 (885)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH-HHH
Confidence 5556788988888888887777644445554 678999999999999999999998886555422 2223444554 555
Q ss_pred hHHHHHHH-----HH-HHHhcC-CCCCC-------CccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000159 213 RDTMKKEL-----EV-ELVNVS-GTARP-------TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 278 (2013)
Q Consensus 213 k~~q~keL-----e~-~f~k~~-~~~~P-------~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~ 278 (2013)
-|+.+.-. +- ..++.. ....| +||-++... |.+... ++++++.|.
T Consensus 301 iPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~------------~~~~~~---~~eDdddDe------ 359 (885)
T KOG2023|consen 301 IPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH------------GNGEDA---DDEDDDDDE------ 359 (885)
T ss_pred HHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc------------cCcccc---ccccccccc------
Confidence 56544321 00 111111 11222 133322211 111100 111111111
Q ss_pred ccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh
Q 000159 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (2013)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 357 (2013)
+-+.....+|.-|+-....|.-+++ +.. .-+.-+++.|++.+..-+=.|...++-++|.+|+|--
T Consensus 360 -----------~DDdD~~~dWNLRkCSAAaLDVLan---vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM 425 (885)
T KOG2023|consen 360 -----------DDDDDAFSDWNLRKCSAAALDVLAN---VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM 425 (885)
T ss_pred -----------cccccccccccHhhccHHHHHHHHH---hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh
Confidence 1122345789999976665554443 111 2245678888888887777889999999999999999
Q ss_pred hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 358 ~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
..|-||...++|.++..+.|||+-||.-. |+++.+.-..+. +..+
T Consensus 426 ~g~~p~LpeLip~l~~~L~DKkplVRsIT-----------CWTLsRys~wv~----------------------~~~~-- 470 (885)
T KOG2023|consen 426 QGFVPHLPELIPFLLSLLDDKKPLVRSIT-----------CWTLSRYSKWVV----------------------QDSR-- 470 (885)
T ss_pred hhcccchHHHHHHHHHHhccCccceeeee-----------eeeHhhhhhhHh----------------------cCCh--
Confidence 99999999999999999999999988532 666655433331 1111
Q ss_pred HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000159 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517 (2013)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~ 517 (2013)
.++++.++..+.+.+-|++..|.+||+.+|+++-.-.|++ +-||++.+-.........|-.+
T Consensus 471 --~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~K--------------- 532 (885)
T KOG2023|consen 471 --DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKK--------------- 532 (885)
T ss_pred --HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhc---------------
Confidence 1234667777888899999999999999999999999986 6678876554433333332111
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHH
Q 000159 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 597 (2013)
Q Consensus 518 ~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~ 597 (2013)
T Consensus 533 -------------------------------------------------------------------------------- 532 (885)
T KOG2023|consen 533 -------------------------------------------------------------------------------- 532 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHHHHHHcC-
Q 000159 598 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATAT- 675 (2013)
Q Consensus 598 ~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~-pgl~DsN~qV~~~~Le~l~~l~~~~~- 675 (2013)
|-..=.+|+..|.+.+...=+...+.++++.-|..+ -.++|+..-+ --.||++..++..++
T Consensus 533 ----------------NLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 533 ----------------NLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGV 595 (885)
T ss_pred ----------------ceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhc
Confidence 000011122222222211000011233332222111 1234433222 234566666666543
Q ss_pred CCc---hhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC
Q 000159 676 KFP---KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (2013)
Q Consensus 676 ~~~---~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~ 752 (2013)
.|. ...+..|+ .|+. +++..++....+.. .....-....-+|..++-+++..|..
T Consensus 596 gF~P~~~~Vy~Rc~-~il~------------~t~q~~~~~~~~~~---------~~~pdkdfiI~sLDL~SGLaegLg~~ 653 (885)
T KOG2023|consen 596 GFLPYAQPVYQRCF-RILQ------------KTLQLLAKVQQDPT---------VEAPDKDFIIVSLDLLSGLAEGLGSH 653 (885)
T ss_pred cccccCHHHHHHHH-HHHH------------HHHHHHHhccCCcc---------ccCCCcceEEEeHHHHhHHHHHhhhc
Confidence 232 22222221 1111 12222222211100 01111112334566666677766653
Q ss_pred C---CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccccc
Q 000159 753 H---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2013)
Q Consensus 753 ~---l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2013)
. +.-..+.+.+..+ +.|.-|+||++|..++|.|-++.-+.+.++++++-|.+-..
T Consensus 654 ie~Lva~snl~~lll~C-~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~N--------------------- 711 (885)
T KOG2023|consen 654 IEPLVAQSNLLDLLLQC-LQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGAN--------------------- 711 (885)
T ss_pred hHHHhhhccHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhc---------------------
Confidence 2 1123477777776 99999999999999999998776555666655544433211
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--cch
Q 000159 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDS 907 (2013)
Q Consensus 830 ~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL--~Ds 907 (2013)
+.++.+. +-..|.-++++|..+.....++. .+.++.-|...+ ...
T Consensus 712 ------------------------l~~~~is--------v~nNA~WAiGeia~k~g~~~~~~-v~~vl~~L~~iin~~~~ 758 (885)
T KOG2023|consen 712 ------------------------LNPENIS--------VCNNAIWAIGEIALKMGLKMKQY-VSPVLEDLITIINRQNT 758 (885)
T ss_pred ------------------------CChhhch--------HHHHHHHHHHHHHHHhchhhhhH-HHHHHHHHHHHhcccCc
Confidence 1111111 12234446666665433333333 244555555554 445
Q ss_pred hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcC-
Q 000159 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDA- 983 (2013)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~- 983 (2013)
++.+...+..+||.++...+..+.+|...++.+....+..=+ ..-.++|...+-.++...+ .-.-+..+..++.+=
T Consensus 759 ~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~ 838 (885)
T KOG2023|consen 759 PKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWS 838 (885)
T ss_pred hHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhccc
Confidence 677888888999999988888899999999988776554321 1245666666666655432 222233344444321
Q ss_pred CCChhhHHHHHHHHHHH
Q 000159 984 KLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 984 k~~p~~R~~~l~~L~~~ 1000 (2013)
+.....|.+..+.|..+
T Consensus 839 np~~~l~~~f~kiL~g~ 855 (885)
T KOG2023|consen 839 NPEDDLRDEFYKILQGF 855 (885)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 01134566655555443
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.6e-11 Score=150.66 Aligned_cols=350 Identities=18% Similarity=0.179 Sum_probs=251.8
Q ss_pred CchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHH---
Q 000159 46 KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWV--- 121 (2013)
Q Consensus 46 ~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~-~k~~~k~~A~~~ll~~~--- 121 (2013)
.||..-.+...+-.-+.-.-..+|.....|+-.++-......+ .-+..++.++++ .+..-+..+..-+--++
T Consensus 90 ~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 90 VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc
Confidence 4443333333333445555778888888888777655433222 223334445566 35455554433333333
Q ss_pred --hhhhhhhHHHHHHHHhhcCChhhHH-HHHHHHHHHHHHhCCCCcC-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHH
Q 000159 122 --ELEAVDVFLDVMEKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCR 197 (2013)
Q Consensus 122 --E~~~~~~v~~~L~~~~~~KnpKv~~-~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~ 197 (2013)
|......+++.|.++..+|++.... +++.+.......-|...-| +-++++.+...|++..+.||.+|...+..+.+
T Consensus 166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 2234567888998888888775555 5666666666666754333 45788888889999999999998887766666
Q ss_pred hhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 198 WIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVD 277 (2013)
Q Consensus 198 ~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~ 277 (2013)
.+.+-.++..+
T Consensus 246 ~~~~~aVK~ll--------------------------------------------------------------------- 256 (569)
T KOG1242|consen 246 CLSAYAVKLLL--------------------------------------------------------------------- 256 (569)
T ss_pred hcCcchhhHhh---------------------------------------------------------------------
Confidence 65432221111
Q ss_pred cccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh
Q 000159 278 PVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL 356 (2013)
Q Consensus 278 ~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L 356 (2013)
| .....+.+.+|+.+..+++.|..++. .|+.......++++.|.+++.|+.+.|+..+..|+..++...
T Consensus 257 --------p--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 257 --------P--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred --------h--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 1 12222333499999999999998884 666666667899999999999999999999999999999888
Q ss_pred hhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000159 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (2013)
Q Consensus 357 ~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~--~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~ 434 (2013)
.+ +-+..++|.|++.+.|.+..+.++......+=|-+ ...+++-++|.+..++..++..+|..++..+..+..-+
T Consensus 327 dN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 327 DN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred cc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 76 45889999999999999977765554444332222 23567788999999999999999999999998877777
Q ss_pred -ChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhH
Q 000159 435 -SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (2013)
Q Consensus 435 -~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2013)
++..+.++++.++|.+.+.+.|+.|+||..+.++|+.+.+..|++.+
T Consensus 404 eDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 404 EDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred cCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 56678899999999999999999999999999999999999998754
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.44 E-value=9e-10 Score=135.61 Aligned_cols=584 Identities=18% Similarity=0.180 Sum_probs=336.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC
Q 000159 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (2013)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~K 415 (2013)
|.....+...-.+|..|++..|=. ..+..|=--+..+.+-||+-...|...++.+ .+++.+++.|...+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 444555666666777676643311 1222222233456667888888888888876 78899999998888865
Q ss_pred -ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc---hhHHHHHhhccHH
Q 000159 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDDV 491 (2013)
Q Consensus 416 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge---~~~~~~l~~Ld~~ 491 (2013)
+|+.|..+......+..-.+-+ ..++++.++.++-++|.|....||..+.-++.++.+..+. +.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8999998887776654433433 3467899999999999999999999999999999988663 3344333333211
Q ss_pred HHH----HHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 492 RRN----KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 567 (2013)
Q Consensus 492 ~~k----ki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~ 567 (2013)
.+. -+...++..|-.-+..-+.- + +.-..+. .--..+.+ .+ |-- ..|.-.-|
T Consensus 603 ir~hrgk~laafLkAigyliplmd~ey-a-----~yyTrev-mlil~rEf-~s------PDe----emkkivLK------ 658 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMDAEY-A-----SYYTREV-MLILIREF-GS------PDE----EMKKIVLK------ 658 (1172)
T ss_pred HHHccChHHHHHHHHHhhccccccHHH-H-----HHhHHHH-HHHHHHhh-CC------ChH----HHHHHHHH------
Confidence 111 11111111111000000000 0 0000000 00000000 00 000 00000000
Q ss_pred CCCCCcCCcCCCCCCCCCCCCCCHHHHHHH---hhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHH----hccCcchHHH
Q 000159 568 GSGKQETSKLTEAPEDVEPSEMSLEEIESR---LGSLIPADTVGQLKSAVWKERLEAISSLRQQVE----AVQNLDQSVE 640 (2013)
Q Consensus 568 ~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~---~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~----~~~~~~~~~~ 640 (2013)
-.++|++. -..++-.+++-.++.+-|..|.++-......+- .......+.+
T Consensus 659 ----------------------Vv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~ 716 (1172)
T KOG0213|consen 659 ----------------------VVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP 716 (1172)
T ss_pred ----------------------HHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH
Confidence 00000000 012344567777888889988887332222221 1100001223
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHhhhcChhhhHH-HHHHHHHHHhhhCh--
Q 000159 641 ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAH-AMKCLTTFSEAVGP-- 715 (2013)
Q Consensus 641 ~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~LveKlgD~K~r~~-a~e~L~~l~e~~~~-- 715 (2013)
.+-|.+. .++|.+.|-.....+++..++.+.+ +|..+....++.+++-.+....+-+. ....+..++..++.
T Consensus 717 ~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~ 793 (1172)
T KOG0213|consen 717 IVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRV 793 (1172)
T ss_pred HHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhcc
Confidence 4444443 3688888888888898888888765 45566666677777666554322222 22344444444432
Q ss_pred ----hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhC
Q 000159 716 ----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (2013)
Q Consensus 716 ----~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G 791 (2013)
..++..++..+ .+|+|+||+.++..++.+..-.... .-..++..+ =+.||.++|
T Consensus 794 kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc--~ee~~m~~l-------------------GvvLyEylg 851 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTC--GEEKLMGHL-------------------GVVLYEYLG 851 (1172)
T ss_pred ccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhc--cHHHHHHHh-------------------hHHHHHhcC
Confidence 23444444554 7999999999998887765422110 000111111 123444444
Q ss_pred hhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCC-cccccccchHHHHhcCCCChHHH
Q 000159 792 PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-EDISGKFTPTLVKSLESPDWKVR 870 (2013)
Q Consensus 792 ~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr-~dIs~~L~~~ll~~l~d~~Wk~R 870 (2013)
..--.-| +.++..|.....-+.-. ...|+ .||.+.|+| -+.++.-|+-
T Consensus 852 eeypEvL----gsILgAikaI~nvigm~-----------------------km~pPi~dllPrltP----ILknrheKVq 900 (1172)
T KOG0213|consen 852 EEYPEVL----GSILGAIKAIVNVIGMT-----------------------KMTPPIKDLLPRLTP----ILKNRHEKVQ 900 (1172)
T ss_pred cccHHHH----HHHHHHHHHHHHhcccc-----------------------ccCCChhhhcccchH----hhhhhHHHHH
Confidence 3322111 12222222222211100 01111 233333554 3456667888
Q ss_pred HHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcH
Q 000159 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950 (2013)
Q Consensus 871 ~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~ 950 (2013)
..+++.+..|+..+..++....+--|.--|...|+--|+.++..|.+.+|.|+++.|+. .++-.+++.|+-+.-
T Consensus 901 en~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------dVLatLlnnLkvqeR 974 (1172)
T KOG0213|consen 901 ENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------DVLATLLNNLKVQER 974 (1172)
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------HHHHHHHhcchHHHH
Confidence 89999999998755444443333334455666677789999999999999999999976 678899999999888
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC-CCChhhhHHH-HHhhcCCCChHH
Q 000159 951 HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKP-ASIAMTDKSSDV 1028 (2013)
Q Consensus 951 ~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~p-l~~~L~D~~~dV 1028 (2013)
..|....-++.-+++.||+=.++|.+..-...+ +..+..++|.-|.-.|+-++. +.+..-.+.| |-.+|.|++.--
T Consensus 975 q~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP--e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vh 1052 (1172)
T KOG0213|consen 975 QNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP--EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVH 1052 (1172)
T ss_pred HhchhhhhhhhhhhhhcCchhhhHHHHhhccCc--hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHH
Confidence 888888889999999999999999888777766 356677777777666655443 3344555555 667999999999
Q ss_pred HHHHHHHHHH
Q 000159 1029 RKAAEACIVE 1038 (2013)
Q Consensus 1029 R~aA~~~L~~ 1038 (2013)
|..|..++..
T Consensus 1053 Rqta~~~I~H 1062 (1172)
T KOG0213|consen 1053 RQTAMNVIKH 1062 (1172)
T ss_pred HHHHHHHHHH
Confidence 9988766543
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.41 E-value=7.8e-08 Score=135.89 Aligned_cols=773 Identities=14% Similarity=0.125 Sum_probs=456.7
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhH---HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh-
Q 000159 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV- 126 (2013)
Q Consensus 52 ~~~~~~~k~v~D-sN~~vqe~~leal~~~v~~~~~~~~~~~---~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~- 126 (2013)
....++.++-.- ++...++.++..|..|.+....+ .+.. ...+|.|+.-.-++.+.+|..|..++..+...+..
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 344566666544 46899999999999999886442 2222 34788888763346788999888887777655331
Q ss_pred -----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHh-----CCCCcChhHHHHhhhhhhcCCC---hHHHHHHHHHHH
Q 000159 127 -----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLTL 193 (2013)
Q Consensus 127 -----~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~f-----G~~~i~~k~il~~l~~ll~~~d---~~VR~~a~~l~~ 193 (2013)
...+..|...+.+-++..+..|..+|..+-... +.+++--.-.+|.|..++.+.+ +.|++.+...+.
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 244556666777778888888888887765321 2122212345777777777763 233333333322
Q ss_pred HHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCC
Q 000159 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEY 273 (2013)
Q Consensus 194 ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~ 273 (2013)
.|..+-+. ....+. + .|.
T Consensus 173 nLs~~~en--~~~~II------------------------------------------e-aGa----------------- 190 (2102)
T PLN03200 173 NLCGSTDG--FWSATL------------------------------------------E-AGG----------------- 190 (2102)
T ss_pred HHhcCccc--hHHHHH------------------------------------------H-cCC-----------------
Confidence 22221110 000000 0 000
Q ss_pred CCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHH
Q 000159 274 ELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAI 349 (2013)
Q Consensus 274 dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~--~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l 349 (2013)
+ +.+.+.+.+.+=..+.+|...|..++. .+.... -+ ...++.|.+.+. +.+..+...|+-+|
T Consensus 191 -----------V--p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 191 -----------V--DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred -----------H--HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 0 134444555555666777776666553 221100 01 123567777786 56778999999999
Q ss_pred HHHHHHhhhcchhh--hHhHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC-Ch
Q 000159 350 GNLARGLRTHFSGS--SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VP 417 (2013)
Q Consensus 350 ~~La~~L~~~f~~~--~~~llp~LL~klkd---------kk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~K-np 417 (2013)
..|+.+- .++... -...+|.|++.+.. .+..+++.+.-||..++.. ...+++.+...+.+. ..
T Consensus 257 ~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 257 EALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccchH
Confidence 9999741 222222 12457777777753 2355678888888887653 356777776666542 34
Q ss_pred HHHHHHHHHHHHHHHhcChh-HHHHhh--hhHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhCchhHHHHHhhccHHHH
Q 000159 418 LVRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPE-VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (2013)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~k~l~Ds~~~-VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~ 493 (2013)
.+-..++..|..++...... .....+ ..+++.|++++.+.++. |.+.+.++|. ..+|+..+...+..-|. .
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da-i- 406 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA-K- 406 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc-h-
Confidence 44445555555554433211 111111 24678999999988877 4777777764 33566544444433210 0
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000159 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQE 573 (2013)
Q Consensus 494 kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~ 573 (2013)
+-+-..+...+ ..+.......+
T Consensus 407 k~LV~LL~~~~---------------------------~evQ~~Av~aL------------------------------- 428 (2102)
T PLN03200 407 KVLVGLITMAT---------------------------ADVQEELIRAL------------------------------- 428 (2102)
T ss_pred hhhhhhhccCC---------------------------HHHHHHHHHHH-------------------------------
Confidence 11111111000 00000000000
Q ss_pred CCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc------hHHHHHHHHHh
Q 000159 574 TSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVC 647 (2013)
Q Consensus 574 ~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~lv~~L~ 647 (2013)
+... ..+.+........-.-+.++..|.+.+-..|..|+..|..+..+.++.. ...+.|+++|.
T Consensus 429 -~~L~---------~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~ 498 (2102)
T PLN03200 429 -SSLC---------CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE 498 (2102)
T ss_pred -HHHh---------CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 0000 0012223333333345788999999999999999998887765422110 12456666653
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhc--ChhhhHHHHHHHHHHHhhhChhHHHHHHH
Q 000159 648 MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLY 723 (2013)
Q Consensus 648 ~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--D~K~r~~a~e~L~~l~e~~~~~~Vl~~L~ 723 (2013)
..+..+++.+.-++..+... ..-.+..+ ..+++.|++-+. +.+.+..|..+|..+...... .++..++
T Consensus 499 ------s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I~~Lv 570 (2102)
T PLN03200 499 ------TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATISQLT 570 (2102)
T ss_pred ------CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHHHHHH
Confidence 34567888888888776642 11112233 236777777664 467888899999988765444 3556677
Q ss_pred HHhhhCCChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 724 KIMKDHKNPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 724 ~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
.. ..+.+++++..++..|..++..-.... .....-++.+..+ +.+.++.+++.|..++..++....+ .
T Consensus 571 ~L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~d-~---- 643 (2102)
T PLN03200 571 AL-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQD-L---- 643 (2102)
T ss_pred HH-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCChH-H----
Confidence 65 478889999999998888765221110 0012356677777 8999999999999998877642211 0
Q ss_pred hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHH
Q 000159 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878 (2013)
Q Consensus 799 ~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~ 878 (2013)
...+-. ....+-++..+.+.+-++|+++...|.
T Consensus 644 -------~~avv~----------------------------------------agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 644 -------CESLAT----------------------------------------DEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred -------HHHHHH----------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 000000 002234777888888999999999999
Q ss_pred HHHHhcccc-CCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHH
Q 000159 879 KILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (2013)
Q Consensus 879 ~il~~a~~~-I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~ 957 (2013)
.+....+.. ...-.-...++.|...|++.+..++..|+.++..|+..-...-+-.....++.+++.|.+....+|+.|.
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Confidence 988522110 0000013467889999999999999999999999986543222112245689999999999999999999
Q ss_pred HHHHHHHHhcCchhhH----------HHHHHHHhcCCC-Chhh--HHHHHHHHHHHhccCCC-CC------ChhhhHHHH
Q 000159 958 TVLDAWLAAVHLDKMV----------PYVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPA 1017 (2013)
Q Consensus 958 ~aL~~i~~~~gl~~ll----------~~l~~~L~~~k~-~p~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~pl 1017 (2013)
.+|..++++.+.+.++ ..+...|...+. +... -.+++.|+++.=..... .+ +...-+.|+
T Consensus 757 ~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l 836 (2102)
T PLN03200 757 RALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPL 836 (2102)
T ss_pred HHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHH
Confidence 9999999888766533 235566663321 1111 34556666552111111 11 223557889
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHH
Q 000159 1018 SIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 1018 ~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+.||.+.+++|-..|.+.|..+..
T Consensus 837 ~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 837 VRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Confidence 999999999999999999887753
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.36 E-value=3.8e-07 Score=129.15 Aligned_cols=807 Identities=16% Similarity=0.146 Sum_probs=465.0
Q ss_pred hhhhhhhccC--CHHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhcc
Q 000159 288 SGFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHF 360 (2013)
Q Consensus 288 ~~f~~~l~s~--kWkeR~eaL~~L~~l~~~p---ki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f 360 (2013)
..+.+++.+. +-++|+.++.+|+.+++.. +..-.+....++.|...|...+..+...|+.++..|+.. ++...
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~I 95 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKV 95 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3677888765 7799999999999998532 111011233566777777655677788888888888753 22211
Q ss_pred hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------hHhHHHHHHHHhhcCCh---HHHHHHHHHHHH
Q 000159 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTF 429 (2013)
Q Consensus 361 ~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~-~~~-------l~~il~~l~~~l~~Knp---~vR~~~l~~L~~ 429 (2013)
- ....+|+|++.+++.+...++.+..+|..+..++ +.. -..++|.|+..+++.+. -++..++..|..
T Consensus 96 v--~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 96 L--LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN 173 (2102)
T ss_pred H--HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 1 2678999999999999999999999999987641 010 13457888888886542 244444555555
Q ss_pred HHHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCC
Q 000159 430 CIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVA 508 (2013)
Q Consensus 430 ~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~ 508 (2013)
+..... ......+ .-.+|.++.+|.+.++.++..|..++..++...++ .. ..|.+ .+ +
T Consensus 174 Ls~~~e-n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~------------~aVIe---aG-a--- 232 (2102)
T PLN03200 174 LCGSTD-GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-SI------------SKVLD---AG-A--- 232 (2102)
T ss_pred HhcCcc-chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HH------------HHHHH---CC-C---
Confidence 443222 1111111 23789999999999999999888777655433322 01 11111 00 0
Q ss_pred CCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCC
Q 000159 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSE 588 (2013)
Q Consensus 509 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~ 588 (2013)
T Consensus 233 -------------------------------------------------------------------------------- 232 (2102)
T PLN03200 233 -------------------------------------------------------------------------------- 232 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHhhccCcHHHHhhhcC-CCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHH
Q 000159 589 MSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667 (2013)
Q Consensus 589 ~S~ee~e~~~~~~l~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l 667 (2013)
-+.+++.|.+ .+-..|.+|+-.|.++..... ...+.+++ ..++..|
T Consensus 233 --------------VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~L 279 (2102)
T PLN03200 233 --------------VKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPAL 279 (2102)
T ss_pred --------------HHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHH
Confidence 0233444433 334556666666655543211 11111111 0111111
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q 000159 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (2013)
Q Consensus 668 ~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~ 747 (2013)
..++.. +. +.++ ..-...-+++.|.-+|..+|.-. ..++..|...+.......+...++..|..++.
T Consensus 280 I~lL~s-p~--~e~~--------~~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 280 INATVA-PS--KEFM--------QGEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHhC-cc--hhhh--------ccccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 111110 00 0000 00001123455555666655432 23444454443233455566677778877776
Q ss_pred HhCCCC-----CChhhHHHHHHhcCCCCCcHh-HHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCC
Q 000159 748 DFGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 821 (2013)
Q Consensus 748 ~fG~~~-----l~~k~li~~l~~~gL~~~n~~-VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2013)
.+.... ++...+...+.++ +.+.++. |.+.+..++..+| |.. .+.+.|.+. +
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~----------~l~~~L~~~-------d- 404 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNA----------YLSRKLNHA-------E- 404 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CCh----------HHHHHHHhc-------c-
Confidence 554321 2223344556667 7877766 4777777766655 222 111111110 0
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000159 822 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (2013)
Q Consensus 822 p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~ 901 (2013)
..+-++..+...+-..+.+++..|..++...+..++.-.-...++.|.
T Consensus 405 --------------------------------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV 452 (2102)
T PLN03200 405 --------------------------------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLI 452 (2102)
T ss_pred --------------------------------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH
Confidence 012345555556667788888888877742111111100123578888
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHhChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhH
Q 000159 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMV 973 (2013)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll 973 (2013)
..|...+..++..|+.+++.|+..-...-... -...+|.+++.|...+..++..|..+|..+..+-. -...+
T Consensus 453 ~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAI 532 (2102)
T PLN03200 453 SLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAV 532 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCH
Confidence 88888889999999999999875322111111 13579999999999999999999999998774321 12456
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000159 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2013)
Q Consensus 974 ~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2013)
|.+...|.+. ++..|..++..|...+... ..+.+++++..|...++.+...+..+++.+......+.+....
T Consensus 533 ppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~-----d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g- 604 (2102)
T PLN03200 533 PALLWLLKNG--GPKGQEIAAKTLTKLVRTA-----DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG- 604 (2102)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-
Confidence 7788888866 4678877777777654321 1345577777787788888888888887776655443322110
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhcc
Q 000159 1054 DIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN 1133 (2013)
Q Consensus 1054 ~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (2013)
.........+.+.++..
T Consensus 605 ~~~~ggL~~Lv~LL~sg--------------------------------------------------------------- 621 (2102)
T PLN03200 605 SAANDALRTLIQLLSSS--------------------------------------------------------------- 621 (2102)
T ss_pred hhccccHHHHHHHHcCC---------------------------------------------------------------
Confidence 00111222222222110
Q ss_pred cCCCChHHHh-hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhh----HHH-
Q 000159 1134 VKDSNKEDRE-RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD----IIE- 1207 (2013)
Q Consensus 1134 ~~~~~k~~R~-~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~----~i~- 1207 (2013)
.+..+. .-..+ +++-..+.++.+.+ ...-.=+-++.+|.+.++..+.++.-.|...+.+.... ++.
T Consensus 622 ----s~~ikk~Aa~iL-snL~a~~~d~~~av---v~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~ 693 (2102)
T PLN03200 622 ----KEETQEKAASVL-ADIFSSRQDLCESL---ATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAE 693 (2102)
T ss_pred ----CHHHHHHHHHHH-HHHhcCChHHHHHH---HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 000000 00000 11122333433322 11112234788888999988888877777766543322 222
Q ss_pred -HHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhc
Q 000159 1208 -VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNF 1286 (2013)
Q Consensus 1208 -~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v 1286 (2013)
.+..++++ +.+.+..+...+++.|..++..-... .+.=..-.||.|+.-+.+..+.+|+..-..+-++|.-
T Consensus 694 GaV~pL~~L----L~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 694 DAIKPLIKL----AKSSSIEVAEQAVCALANLLSDPEVA----AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred CCHHHHHHH----HhCCChHHHHHHHHHHHHHHcCchHH----HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 24444444 57889999999999988765432111 1111234589998888777788899999999999999
Q ss_pred cCccccH----------HHHHhhhcCCChhhH--HHHHHHHHHHHHh-hCCCcccc--------cchHHHHHHhhcCCCh
Q 000159 1287 YSATKTL----------PYILEGLRSKNNRTR--IECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDG 1345 (2013)
Q Consensus 1287 ~p~skvf----------~~l~~gl~sKN~r~R--~ecl~~l~~li~~-~g~~~~~~--------~k~l~~ia~~i~drd~ 1345 (2013)
+|...+| .-|++-|++-|.+.- .|.|+.|+.+... +|..-..| +-.|..+..++.+-++
T Consensus 766 ~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p 845 (2102)
T PLN03200 766 FPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHP 845 (2102)
T ss_pred CChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCCh
Confidence 9977644 334555677776554 4699999998873 34332111 2346778888999999
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHhhc---CCHHHHHhHHHHHHhh
Q 000159 1346 EIRKAALNTLATGYKILGEDIWRYVGK---LTDAQKSMLDDRFKWK 1388 (2013)
Q Consensus 1346 ~VR~AAl~~l~~~y~~~G~~v~~~vg~---Ls~~~~s~l~er~kr~ 1388 (2013)
.|-..|+..|. .+|+|+-. .+|+ =.++-.+.|-.|+=++
T Consensus 846 ~~~~kai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 846 LVQDKAIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHHHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 99999999998 45666521 2333 2455567777777654
No 17
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=1.3e-09 Score=144.21 Aligned_cols=565 Identities=18% Similarity=0.193 Sum_probs=347.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhH
Q 000159 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (2013)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2013)
.+...+...+.+-||..|++.+-||-.+++.+++ ....-.+++|..++..+|.|.|.-+.|.|.+.|+.++..-+...-
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 3445556677899999999999999999988763 223345688999999999999999999999999998887665321
Q ss_pred HHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCC
Q 000159 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561 (2013)
Q Consensus 482 ~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k 561 (2013)
..+.+. ..+.+ .+|.. . ...+. .+ ..-++.+.+ |+.|
T Consensus 898 ~~LV~s----L~~tl---~~Gkr-----~--~~~vs--------~e------TelFq~G~L-g~Tp-------------- 934 (1702)
T KOG0915|consen 898 KSLVDS----LVNTL---TGGKR-----K--AIKVS--------EE------TELFQEGTL-GKTP-------------- 934 (1702)
T ss_pred HHHHHH----HHHHH---hcccc-----c--cceec--------cc------hhcccCCcC-CCCC--------------
Confidence 222211 11111 11110 0 00000 00 000100111 1111
Q ss_pred CCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhc-----CCCHHHHHHHHHHHHHHHHh-ccCc
Q 000159 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK-----SAVWKERLEAISSLRQQVEA-VQNL 635 (2013)
Q Consensus 562 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~-----s~~Wk~Rl~ale~L~~~v~~-~~~~ 635 (2013)
.|+ .--+.-|+...++++-.|+++-++- +.-|.-|+.|.-.|..+.+. ....
T Consensus 935 -----~Gg-----------------~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl 992 (1702)
T KOG0915|consen 935 -----DGG-----------------KISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKL 992 (1702)
T ss_pred -----CCC-----------------cchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhh
Confidence 110 0116789999999999999987552 36799999999999998876 3444
Q ss_pred chHHHHHH-HHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhh
Q 000159 636 DQSVEILV-RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEA 712 (2013)
Q Consensus 636 ~~~~~~lv-~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~ 712 (2013)
.++..-|+ |.... --|.+..|+..+-++|..++...+.....++..++..|+..+++. ++|+.+.-+|..+..-
T Consensus 993 ~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred hhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 44443333 22221 258999999999999999997655666778899999999999996 7899998888887765
Q ss_pred hChhHH-------HHHHHHHhhhCC-Chh-HHHHHHHHHHHHHHHhCCC--CCC----hhhHHHHHHhcCCCCCcHhHHH
Q 000159 713 VGPGFI-------FERLYKIMKDHK-NPK-VLSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAATRN 777 (2013)
Q Consensus 713 ~~~~~V-------l~~L~~~l~~~K-npK-v~~~~l~~L~~li~~fG~~--~l~----~k~li~~l~~~gL~~~n~~VR~ 777 (2013)
-+.+.+ +..+++.+-+.| +.| +-..++..|+.++-..+-. +.. +..+++++..-|.-++-++||.
T Consensus 1070 ~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1070 RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence 444433 444444432222 222 2234566677766554422 111 2346777755466788999999
Q ss_pred HHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHh-hCCCCCC------CCCcccccCccccCCC-CCCCCCCCCCcc
Q 000159 778 ATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE-KNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLPRED 849 (2013)
Q Consensus 778 aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~-k~~~~~~------p~p~R~~r~~~~~~s~-~~~~~d~lpr~d 849 (2013)
.++.++..|-++.|..+++|+.++.|.++..+..-=. .+.+-.. .......|.+.++++. -...++.++-.|
T Consensus 1150 ~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD 1229 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID 1229 (1702)
T ss_pred HHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh
Confidence 9999999999999999999999999988776532100 0000000 0000011221111100 000123344444
Q ss_pred c--ccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHh
Q 000159 850 I--SGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 926 (2013)
Q Consensus 850 I--s~~L~~~ll~~l~d~-~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~al 926 (2013)
+ ..++.|.+.+.+... .--.|..+..-+.-+.......++|.. |.++.+|...+.|.|..++..-...++.++..-
T Consensus 1230 ~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 4 345666666655443 445566666666666666667788885 999999999999999999999999999999887
Q ss_pred Ch-hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc
Q 000159 927 GP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (2013)
Q Consensus 927 g~-~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~--gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~ 1003 (2013)
.+ .+.++++.++..++....+.++.......+-.+...+.. ..+.++|.+.=+.... ....+++++- ++..
T Consensus 1309 s~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee---~Ka~q~Lw~d---vW~e 1382 (1702)
T KOG0915|consen 1309 SPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE---EKANQELWND---VWAE 1382 (1702)
T ss_pred ChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHH---HHHH
Confidence 76 577888888887777766666433333333111222222 2466788655444311 1112333322 2222
Q ss_pred -CCCCCC-----hhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1004 -LSGFPD-----AAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1004 -~~~~~~-----~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
.+.... ...++.+ +...+++....+|+.+..++..+...
T Consensus 1383 ~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1383 LVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred hCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 222211 2333444 34456888889999988888765433
No 18
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.6e-09 Score=131.50 Aligned_cols=582 Identities=15% Similarity=0.152 Sum_probs=355.6
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHHHH
Q 000159 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (2013)
Q Consensus 300 keR~eaL~~L~~l~~--~pki~~~~~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~LL~ 373 (2013)
-.|...|+.|.-+.. .|......+.+++-++..... +.+..|+..|.+||-.--.-.+..|... ...++..+.+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 466778888877774 233222345555555554443 7788888888887765544455667533 4567888889
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh-cC------------
Q 000159 374 KLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET-SS------------ 435 (2013)
Q Consensus 374 klkdkk~~V~~aa~~aL~ai~~~~~~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~-~~------------ 435 (2013)
........|+.++..||..|+.-+.... +.++..-+.++++.|..|..++.+|-..+.+. .+
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9989999999999999999886522122 23455556788999999999999988854432 11
Q ss_pred --hh--HHH-HhhhhHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcC
Q 000159 436 --KA--AVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2013)
Q Consensus 436 --~~--~l~-~~l~~l~p~l~k~l~-------Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (2013)
+. .+. ..++.++|.|.+.|. |-+=.+-.||-.||..+..++|+..+.+.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl------------------ 366 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL------------------ 366 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH------------------
Confidence 10 011 223456666666651 111234566666666666666654322111
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCC
Q 000159 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (2013)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~ 583 (2013)
T Consensus 367 -------------------------------------------------------------------------------- 366 (859)
T KOG1241|consen 367 -------------------------------------------------------------------------------- 366 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc--hH----HHHHHHHHhcCCCCcccHH
Q 000159 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QS----VEILVRLVCMLPGWSEKNV 657 (2013)
Q Consensus 584 ~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~--~~----~~~lv~~L~~~pgl~DsN~ 657 (2013)
+=+.+.+.+.+|+.|.+|+..+++++.+..+.. .. ...++.. ..|++.
T Consensus 367 --------------------~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~l------m~D~sl 420 (859)
T KOG1241|consen 367 --------------------PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINL------MSDPSL 420 (859)
T ss_pred --------------------HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHH------hcCchh
Confidence 223346777899999999999999988754321 11 0111111 123333
Q ss_pred HHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHH
Q 000159 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSE 737 (2013)
Q Consensus 658 qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~ 737 (2013)
.|. ++..+.++.+++-+.+... ...-+..+++.++.++ +..|++...
T Consensus 421 ~Vk-------------------dTaAwtlgrI~d~l~e~~~------------n~~~l~~~l~~l~~gL--~DePrva~N 467 (859)
T KOG1241|consen 421 WVK-------------------DTAAWTLGRIADFLPEAII------------NQELLQSKLSALLEGL--NDEPRVASN 467 (859)
T ss_pred hhc-------------------chHHHHHHHHHhhchhhcc------------cHhhhhHHHHHHHHHh--hhCchHHHH
Confidence 222 2444555555544332110 0011233455555554 567999999
Q ss_pred HHHHHHHHHHHh---CCCC----CCh---hhHHHHHHhc-CCCC-CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHH
Q 000159 738 GILWMVSAVEDF---GVSH----LKL---KDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPAL 805 (2013)
Q Consensus 738 ~l~~L~~li~~f---G~~~----l~~---k~li~~l~~~-gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~l 805 (2013)
++..+..+.+.. +.+. ... ..++.-+.+. ...+ ...+.|.+|.+.|++|-++...+..+.+.++-+.+
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i 547 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 888887777533 2211 111 2334333331 0112 23579999999999999999888777777777777
Q ss_pred HHHHHHHHh--hCCCCCCCCCccc-ccCcccc-----C---CCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHH
Q 000159 806 LSALDAEYE--KNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLES 873 (2013)
Q Consensus 806 l~~Le~ef~--k~~~~~~p~p~R~-~r~~~~~-----~---s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~-~Wk~R~ea 873 (2013)
++.|+.-++ ..... .|. ...=++. + ...+ . .+-.+++.|-.-|+..++.+ .--+-.+|
T Consensus 548 l~kl~q~i~~~~l~~~-----dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e~a 617 (859)
T KOG1241|consen 548 LEKLDQTISSQILSLA-----DRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHEEA 617 (859)
T ss_pred HHHHHHHHHHHhccHh-----hHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchHHH
Confidence 777776655 11110 000 0000000 0 0000 0 11234455666777777773 34566788
Q ss_pred HHHHHHHHHhccccCCCCChhhHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcH--
Q 000159 874 IEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-- 950 (2013)
Q Consensus 874 le~l~~il~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~-- 950 (2013)
+-++..++...++.+..+. ..+.+.|..-| +-....|...|..+++.|+.+|+.+|.+|+..++..++++|+....
T Consensus 618 ~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR 696 (859)
T KOG1241|consen 618 FLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHR 696 (859)
T ss_pred HHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccc
Confidence 8888888875433333332 45556666666 4456789999999999999999999999999999999999998665
Q ss_pred HHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCC--------C-----ChhhHHHHHHHHHHHhccCCCC---CChhh
Q 000159 951 HMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAK--------L-----GAEGRKDLFDWLSKQLTGLSGF---PDAAH 1012 (2013)
Q Consensus 951 ~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k--------~-----~p~~R~~~l~~L~~~l~~~~~~---~~~~~ 1012 (2013)
.|.-+...|.+.++-.+| +++.+..+...|+... + .-.+|..+++.-.-.+..++.. ..+..
T Consensus 697 ~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p 776 (859)
T KOG1241|consen 697 NVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQP 776 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc
Confidence 477788899999999987 5667777776665211 0 1357888888777777766642 22334
Q ss_pred hHHHHHhhc-----CCCC-hHHHHHHHHHHHHHHHHcChhHHH
Q 000159 1013 LLKPASIAM-----TDKS-SDVRKAAEACIVEILRAGGQETIE 1049 (2013)
Q Consensus 1013 ll~pl~~~L-----~D~~-~dVR~aA~~~L~~l~~~~G~~~~~ 1049 (2013)
.+++|++.+ ++.+ ..+-.+|.-.++-+...+|.+...
T Consensus 777 ~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 777 YVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 455555432 3333 556677777888888889876544
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.24 E-value=5.4e-08 Score=117.78 Aligned_cols=501 Identities=13% Similarity=0.105 Sum_probs=297.1
Q ss_pred HHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch--hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH
Q 000159 328 RTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404 (2013)
Q Consensus 328 ~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~i 404 (2013)
.......+ +....|+..|++||..=..-.+..|. -....++..+.+........++.++..|+..++.-+....+-+
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y 259 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY 259 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455 77778888888888775555566664 3355678888898888999999999999998775422233334
Q ss_pred HHHH-----HHHhhcCChHHHHHHHHHHHHHHH-hcChhH--------------HH-HhhhhHHHHHHHHhcC----C--
Q 000159 405 VEDV-----KTSVKNKVPLVRSLTLNWVTFCIE-TSSKAA--------------VL-KVHKDYVPICMECLND----G-- 457 (2013)
Q Consensus 405 l~~l-----~~~l~~Knp~vR~~~l~~L~~~l~-~~~~~~--------------l~-~~l~~l~p~l~k~l~D----s-- 457 (2013)
++.. ..++++.|-+|+..+.+|-....+ ...-.- +. ...++++|.+.++|.. .
T Consensus 260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~ 339 (858)
T COG5215 260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG 339 (858)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4432 356778999999999998854443 221110 00 1234566666666521 1
Q ss_pred -CHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccc
Q 000159 458 -TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK 536 (2013)
Q Consensus 458 -~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 536 (2013)
+=++-.+|..||..|....|+..++|.+
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~i~~pVl--------------------------------------------------- 368 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDKIMRPVL--------------------------------------------------- 368 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhHhHHHHH---------------------------------------------------
Confidence 1235556666666666666655443311
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHH
Q 000159 537 SAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWK 616 (2013)
Q Consensus 537 ~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk 616 (2013)
+-+.+.+++.+|.
T Consensus 369 -------------------------------------------------------------------~FvEqni~~~~w~ 381 (858)
T COG5215 369 -------------------------------------------------------------------GFVEQNIRSESWA 381 (858)
T ss_pred -------------------------------------------------------------------HHHHHhccCchhh
Confidence 1123456777999
Q ss_pred HHHHHHHHHHHHHHhccCc--chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc
Q 000159 617 ERLEAISSLRQQVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (2013)
Q Consensus 617 ~Rl~ale~L~~~v~~~~~~--~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (2013)
.|.+|+..+++.+.+.... +....-.+..+.. ...|+-..|.. ...+|+..+.+.+.
T Consensus 382 nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n--~m~D~~l~vk~-------------------ttAwc~g~iad~va 440 (858)
T COG5215 382 NREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN--EMSDSCLWVKS-------------------TTAWCFGAIADHVA 440 (858)
T ss_pred hHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH--hcccceeehhh-------------------HHHHHHHHHHHHHH
Confidence 9999999999988774331 1110000110000 01233333322 23333333333222
Q ss_pred ChhhhHHHHHHHHHHHhhhCh----hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-----hh---hHHHH
Q 000159 695 DIKTRAHAMKCLTTFSEAVGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-----LK---DLIDF 762 (2013)
Q Consensus 695 D~K~r~~a~e~L~~l~e~~~~----~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-----~k---~li~~ 762 (2013)
+ ..+| ..+.+..+-++ ..+|++...|....-.++..+....-. .+ .++.-
T Consensus 441 ~----------------~i~p~~Hl~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~ 502 (858)
T COG5215 441 M----------------IISPCGHLVLEVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNA 502 (858)
T ss_pred H----------------hcCccccccHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHH
Confidence 2 1111 12233333343 467888888888888888877643210 11 23332
Q ss_pred HHhc-CCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCC
Q 000159 763 CKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (2013)
Q Consensus 763 l~~~-gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~ 841 (2013)
+.+. .+...+.+.|.++...|++|..+..+.+.+.+.++-...++.|+.-+.-.... .. .
T Consensus 503 Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~--------l~-----------~ 563 (858)
T COG5215 503 LVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI--------LA-----------T 563 (858)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh--------hh-----------h
Confidence 2221 12334567899999999999999998888888777777777776654321100 00 0
Q ss_pred CCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch-hHHHHHHHHHHHH
Q 000159 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLG 920 (2013)
Q Consensus 842 ~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~ 920 (2013)
+|.. +..++.. .-+.-|..|++...+.|.+.. ..|+..|.+.|... ...+-...+..|+
T Consensus 564 eD~~--------~~~elqS-----------N~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIs 623 (858)
T COG5215 564 EDQL--------LVEELQS-----------NYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAIS 623 (858)
T ss_pred HHHH--------HHHHHHH-----------HHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHH
Confidence 0000 0111111 123356667765555566653 56888888888655 3445567788899
Q ss_pred HHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000159 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2013)
.++..+|+.|++|+..|+|.+.+.|......|...|..-+..+...+|-+- .+ ..+.+ ..-|.+.
T Consensus 624 al~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df-~~-y~d~~-------------ms~LvQ~ 688 (858)
T COG5215 624 ALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF-NI-YADVL-------------MSSLVQC 688 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH-HH-HHHHH-------------HHHHHHH
Confidence 999999999999999999999999999999999999999888888876221 11 11111 1112223
Q ss_pred hccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000159 1001 LTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1001 l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l~~~~ 1043 (2013)
++ ++....-++| +++|+.|-...+-.+.+..|..+|..+
T Consensus 689 ls----s~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~ 728 (858)
T COG5215 689 LS----SEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLF 728 (858)
T ss_pred hc----ChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 32 1122344555 777777777776666666666666544
No 20
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.23 E-value=8.3e-09 Score=123.74 Aligned_cols=206 Identities=19% Similarity=0.271 Sum_probs=172.4
Q ss_pred ccCCHHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHH
Q 000159 295 KATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~--pki~~~~~~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 371 (2013)
.+..-.+|++|+.+|..++.. -.++...|.+|+..+..++.| .+......|++.|+.+.+.-...|..+.+..+-.+
T Consensus 297 g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~ 376 (516)
T KOG2956|consen 297 GSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKV 376 (516)
T ss_pred CccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHH
Confidence 335888999999999987743 334556789999999999998 78889999999999999999999999999999999
Q ss_pred HHHhccCcH-HHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000159 372 LEKLKEKKP-TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2013)
Q Consensus 372 L~klkdkk~-~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2013)
|+..+|..+ .++.|...|+..+..+ .++ ..+.-|...+.+-.-+.-..+++.+.++++..+...+...+++++|.+
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~las~--~P~-~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~ 453 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLASH--LPL-QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCV 453 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHhh--Cch-hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHH
Confidence 999999876 4566666666667665 333 344444444444444455678889999999999988889999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcC
Q 000159 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2013)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (2013)
+++.+.+...||++|.-||..+...+|++.++|++..|...+++.|+=|++++
T Consensus 454 iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 454 IQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred HHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988899999999999999998888764
No 21
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.21 E-value=6.2e-07 Score=111.33 Aligned_cols=571 Identities=16% Similarity=0.197 Sum_probs=340.4
Q ss_pred HHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCC---C
Q 000159 326 VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCL---N 400 (2013)
Q Consensus 326 l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~-~~~---~ 400 (2013)
|.+.|+.+.+ -...+-+..+++|++.||.-+|-..-+|+..++..+=..++|..+.||.-+..|+.+++.. +.. .
T Consensus 512 llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~ 591 (1172)
T KOG0213|consen 512 LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQ 591 (1172)
T ss_pred HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHH
Confidence 3344444444 2245567888999999999999988899999999999999999999999999999999987 112 2
Q ss_pred hHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 401 LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 401 l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
++.++..|..+.. |.. ..=..-|+.+..++.-.....-.-+..+++-.+.+-.+-+|.+.++.-.+.+..++...|-.
T Consensus 592 fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 592 FDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred HHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC
Confidence 3556666666554 332 12122233333322222222111223444445555555555555555555555555554432
Q ss_pred hHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000159 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2013)
Q Consensus 480 ~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2013)
+--...+-| -+.+..-.+ ++. ++-++
T Consensus 671 ~~y~r~dil--------p~ff~~fw~-----------------------------rrm-----A~drr------------ 696 (1172)
T KOG0213|consen 671 PAYIRFDIL--------PEFFFSFWG-----------------------------RRM-----ALDRR------------ 696 (1172)
T ss_pred HHHHhhhhh--------HHHHhhhhh-----------------------------hhh-----hcccc------------
Confidence 211111101 111110000 000 00000
Q ss_pred CCCCCCCCCCCCCcCCcCCCCCCCCCCCCC---CHHHHHHHhh-ccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc
Q 000159 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEM---SLEEIESRLG-SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL 635 (2013)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~---S~ee~e~~~~-~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~ 635 (2013)
.+.. +.-++..++. +.+-.-++..|.+..-.-|...++.+..++...+..
T Consensus 697 --------------------------~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 697 --------------------------NYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred --------------------------chhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 0000 0011111110 011133455667777777777777777777664432
Q ss_pred c--h-HHHHHHHHHhcCCCCc--ccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHH
Q 000159 636 D--Q-SVEILVRLVCMLPGWS--EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTT 708 (2013)
Q Consensus 636 ~--~-~~~~lv~~L~~~pgl~--DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~ 708 (2013)
+ . .-+-+++.+.. .|. ++.-.|+-.+|.++. ..++.-.+.++..++..++-+|-+ +++|..|.+++..
T Consensus 751 diderleE~lidgil~--Afqeqtt~d~vml~gfg~V~---~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~ 825 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILY--AFQEQTTEDSVMLLGFGTVV---NALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISS 825 (1172)
T ss_pred cccHHHHHHHHHHHHH--HHHhcccchhhhhhhHHHHH---HHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 2 1 12233333221 122 233334444444433 322222334566677777777766 4789999888887
Q ss_pred HHhhh---ChhHHHH----HHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC--ChhhHHHHHHhcCCCCCcHhHHHHH
Q 000159 709 FSEAV---GPGFIFE----RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNAT 779 (2013)
Q Consensus 709 l~e~~---~~~~Vl~----~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l--~~k~li~~l~~~gL~~~n~~VR~aA 779 (2013)
++... +-+..+. .|++.+ .-..|.|.-..|..|..++.-.|.... +++.+++-+-.. |.+....|...+
T Consensus 826 la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPI-LknrheKVqen~ 903 (1172)
T KOG0213|consen 826 LAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPI-LKNRHEKVQENC 903 (1172)
T ss_pred HHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHh-hhhhHHHHHHHH
Confidence 76543 3333333 345554 567899999999999999998887654 578899988888 999999999999
Q ss_pred HHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcc-cccCccccCCCCCCCCCCCCCcccccccchHH
Q 000159 780 IKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKK-TVRASESTSSVSSGGSDGLPREDISGKFTPTL 858 (2013)
Q Consensus 780 ~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R-~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~l 858 (2013)
+.+++.+... |+. | + +.| .. .|.=+|
T Consensus 904 IdLvg~Iadr-gpE---~------------------v-------~aREWM------------------------RIcfeL 930 (1172)
T KOG0213|consen 904 IDLVGTIADR-GPE---Y------------------V-------SAREWM------------------------RICFEL 930 (1172)
T ss_pred HHHHHHHHhc-Ccc---c------------------C-------CHHHHH------------------------HHHHHH
Confidence 9999988632 211 0 0 000 00 133466
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHH
Q 000159 859 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2013)
Q Consensus 859 l~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (2013)
++.+.+.|=.+|..|.+.++-|.. .|.| .+++..|..-|+-...+.+.-+--.|+-+++.+| +| .++
T Consensus 931 lelLkahkK~iRRaa~nTfG~Iak----aIGP---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~----pF--tVL 997 (1172)
T KOG0213|consen 931 LELLKAHKKEIRRAAVNTFGYIAK----AIGP---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG----PF--TVL 997 (1172)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH----hcCH---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC----ch--hhh
Confidence 777777777789999998887653 4555 4567776665532222222111122233333333 34 689
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC-C--CC
Q 000159 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F--PD 1009 (2013)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~--~~ 1009 (2013)
|.+++-+.-...+|..-...+|.-+++.+| +-.+.|.|.++|.+. .+.-|+.+...+.-..-+... . ..
T Consensus 998 PalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr--D~vhRqta~~~I~Hl~Lg~~g~g~eda 1075 (1172)
T KOG0213|consen 998 PALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR--DLVHRQTAMNVIKHLALGVPGTGCEDA 1075 (1172)
T ss_pred HHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--cHHHHHHHHHHHHHHhcCCCCcCcHHH
Confidence 999999999999999999999999999987 345677888888765 355677766665433222211 1 12
Q ss_pred hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000159 1010 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2013)
Q Consensus 1010 ~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2013)
+.+++.-+...+-|.++-|-.+..+|+..+...+|...|.+++
T Consensus 1076 ~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1076 LIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred HHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3455555777889999999999999999999999999998886
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.2e-05 Score=101.65 Aligned_cols=564 Identities=16% Similarity=0.155 Sum_probs=335.9
Q ss_pred ccCCHHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-------Hhhhcchhh--
Q 000159 295 KATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-------GLRTHFSGS-- 363 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~--pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~-------~L~~~f~~~-- 363 (2013)
.+.+-+.|..|+..|.+|..- ..+.+---..++..-...++..|-.|...|+..-..++. ..+..++.+
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 567778899999999887641 111111011244444456667777787777655543332 223333333
Q ss_pred ----------hHhHHHHHHHHhcc--Cc-----HHHHHHHHHHHHHHHHhcCCC---hHhHHHHHHHHhhcCChHHHHHH
Q 000159 364 ----------SRFLLPVLLEKLKE--KK-----PTVAESLTQTLQAMHKAGCLN---LVDVVEDVKTSVKNKVPLVRSLT 423 (2013)
Q Consensus 364 ----------~~~llp~LL~klkd--kk-----~~V~~aa~~aL~ai~~~~~~~---l~~il~~l~~~l~~Knp~vR~~~ 423 (2013)
+..++|.||+.+-. .. =++..|+..||.-+... .. +.-++|.|.+.+++.+|.-|..+
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--~~D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--VGDDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--hcccchhhhHHHHHHhcCCcchhhhhHH
Confidence 34899999998843 22 24788898999877764 22 23455556667778999999988
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcC
Q 000159 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2013)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (2013)
.-.+...+..-.+..+.+.....+|.+...+.|+.--||+.+.-+|+.+..++.+...+... -..++.-.+++.
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~------l~~~l~~l~~gL 458 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL------LQSKLSALLEGL 458 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh------hhHHHHHHHHHh
Confidence 88888888766666677888999999999999999999999999999999888754222110 011222222221
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCC
Q 000159 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (2013)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~ 583 (2013)
-+. |. .+ . . ..
T Consensus 459 ~De-------------------Pr--------va------------------------------------~-N--~C--- 469 (859)
T KOG1241|consen 459 NDE-------------------PR--------VA------------------------------------S-N--VC--- 469 (859)
T ss_pred hhC-------------------ch--------HH------------------------------------H-H--HH---
Confidence 000 00 00 0 0 00
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCC---CCcccHHHHH
Q 000159 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP---GWSEKNVQVQ 660 (2013)
Q Consensus 584 ~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~p---gl~DsN~qV~ 660 (2013)
-..++.-|. +++..-+. ...+..++..+.++.-|.+.- .-+++| .+
T Consensus 470 --WAf~~Laea--------------------------~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN--LR 518 (859)
T KOG1241|consen 470 --WAFISLAEA--------------------------AYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSN--LR 518 (859)
T ss_pred --HHHHHHHHH--------------------------HHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhh--HH
Confidence 000010000 00000000 001112223445555443221 234555 56
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHH
Q 000159 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGIL 740 (2013)
Q Consensus 661 ~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~ 740 (2013)
..++++|..++..+++-....+..+.+.+.+||+. ++. .+++...-.++--.++.-.++
T Consensus 519 ~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q---------~i~------------~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 519 SAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ---------TIS------------SQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH---------HHH------------HHhccHhhHHHHHHHHHHHHH
Confidence 78899999999876543333333444444444433 111 111111111111223445577
Q ss_pred HHHHHHHHhCCCCCC-hhhHHHHHHhcCCCC-CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCC
Q 000159 741 WMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF 818 (2013)
Q Consensus 741 ~L~~li~~fG~~~l~-~k~li~~l~~~gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~ 818 (2013)
+|..++..+|..... ...++..+... ++. ....|-+.|.-.+++|...+|..|..|+..++|-+...+...-
T Consensus 578 ~Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~----- 651 (859)
T KOG1241|consen 578 TLQSIIRKVGSDIREVSDQIMGLFLRI-FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ----- 651 (859)
T ss_pred HHHHHHHHccccchhHHHHHHHHHHHH-HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch-----
Confidence 788888888874322 34577777666 777 4566899999999999999999999999888887766653321
Q ss_pred CCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHH
Q 000159 819 EGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG 898 (2013)
Q Consensus 819 ~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~ 898 (2013)
++++-..++-.+..+.+.-+..|.|.. .+++.
T Consensus 652 -----------------------------------------------e~qVc~~aVglVgdl~raL~~~i~py~-d~~mt 683 (859)
T KOG1241|consen 652 -----------------------------------------------EYQVCAAAVGLVGDLARALEDDILPYC-DELMT 683 (859)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHH
Confidence 122333455556666654445666664 78999
Q ss_pred HHHhcccch--hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh---CCC--------cHHHHHHHHHHHHHHHH
Q 000159 899 GLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDN--------KKHMRECTLTVLDAWLA 965 (2013)
Q Consensus 899 ~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L---~D~--------k~~Vr~aa~~aL~~i~~ 965 (2013)
.|.+.|+.. ..+|.-..+.+++.||-++|.+|++|+..+++.+-..- .|. -..+|+++.++-+.++.
T Consensus 684 ~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~q 763 (859)
T KOG1241|consen 684 VLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQ 763 (859)
T ss_pred HHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999998655 45788888999999999999999999999999887655 122 12589999999888887
Q ss_pred hcC-------chhhHHHHHHHHh----cCCCChhhHHHHHHHHHHHhccCCCC---C-ChhhhHHH-HHhhcCCCChHHH
Q 000159 966 AVH-------LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLTGLSGF---P-DAAHLLKP-ASIAMTDKSSDVR 1029 (2013)
Q Consensus 966 ~~g-------l~~ll~~l~~~L~----~~k~~p~~R~~~l~~L~~~l~~~~~~---~-~~~~ll~p-l~~~L~D~~~dVR 1029 (2013)
-++ +..++|.|...+. ++..+-.+-..+++.+......+++. . ...+++.- |..+..-+....|
T Consensus 764 glk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK 843 (859)
T KOG1241|consen 764 GLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTK 843 (859)
T ss_pred HhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhH
Confidence 765 2345566655554 22222233455666665555545432 1 12345555 4455655666667
Q ss_pred HHHHHHHHHHHH
Q 000159 1030 KAAEACIVEILR 1041 (2013)
Q Consensus 1030 ~aA~~~L~~l~~ 1041 (2013)
+.|.-+...+-+
T Consensus 844 ~~A~wa~e~ikr 855 (859)
T KOG1241|consen 844 DLARWATEEIKR 855 (859)
T ss_pred HHHHHHHHHHHH
Confidence 777666555443
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=3.5e-08 Score=120.13 Aligned_cols=378 Identities=17% Similarity=0.207 Sum_probs=262.5
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchH--HHHHHHHHhcCC-CCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLP-GWSEKNVQVQQQVIEVINYLAATATKFPK 679 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~--~~~lv~~L~~~p-gl~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (2013)
++.+..+|.++-+..|.+|.-+++.++++.-..++. ..-++..|...- .=.++|. ...+|-.+...+-.++.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456789999999999999999999999873222222 233344332110 0012222 22444444444333333233
Q ss_pred hhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC
Q 000159 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (2013)
Q Consensus 680 ~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~ 751 (2013)
.+...+++.++..++|. ++|--|.+.|..++.....+ .++..+++.. .....-|+ ++.+.+..++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 37888999999999984 78999999999999876543 3455555543 22222232 333444445544332
Q ss_pred ---CCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccc
Q 000159 752 ---SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (2013)
Q Consensus 752 ---~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~ 828 (2013)
..+++..+++.+..- +-..||.+|..-+..+..|+...+-.+-.|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 247889999999886 888899999999988888775544333333322
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC--ChhhHHHHHHhcccc
Q 000159 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA--GTGELFGGLRGRLYD 906 (2013)
Q Consensus 829 r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~--~~~eL~~~L~~rL~D 906 (2013)
+.+.|+..++|.+-.+|.-.=..+.+++.+- +-.|. ++++.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 3345677778887777755555555555532 11221 478999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000159 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 976 (2013)
Q Consensus 907 sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g---------l~~ll~~l 976 (2013)
++.-++..|+..+.++.+--|+.+-.|...++..++.++.|+.. .++..+...-+.+..-++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999887 477666555444444332 34677778
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 977 ~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
...|.+. ..+.|.++++|+.-...+.+.. .+..++...+++.|.|++.+|-..+-..+..+...
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 8888776 4789999999999877777653 34466777799999999999999988888777544
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=6.1e-08 Score=118.04 Aligned_cols=400 Identities=14% Similarity=0.171 Sum_probs=278.6
Q ss_pred HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHH
Q 000159 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (2013)
Q Consensus 717 ~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (2013)
.++++++.....+.+.--|.+.+..++.+.-..|.+... ++.+++-+..+ +.+++..||.-|.+.+-.+.+....++.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 345555543323333223448888888887777775422 44566666665 9999999999999988777766666666
Q ss_pred hhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000159 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2013)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2013)
.|++.+-.++. |+.. |.+-.+| .|.+
T Consensus 121 ~~Fn~iFdvL~--------klsa---------------------------------------------Dsd~~V~-~~ae 146 (675)
T KOG0212|consen 121 VYFNEIFDVLC--------KLSA---------------------------------------------DSDQNVR-GGAE 146 (675)
T ss_pred cchHHHHHHHH--------HHhc---------------------------------------------CCccccc-cHHH
Confidence 56544333222 2211 1111111 1112
Q ss_pred H----HHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHH
Q 000159 876 A----VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951 (2013)
Q Consensus 876 ~----l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~ 951 (2013)
. +.+|+.+... +.+ +.++++.|+.|+.+.|...++.-+..+..+-..-+-+|-.|...+++++++.|+|+...
T Consensus 147 LLdRLikdIVte~~~--tFs-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~e 223 (675)
T KOG0212|consen 147 LLDRLIKDIVTESAS--TFS-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDE 223 (675)
T ss_pred HHHHHHHHhcccccc--ccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHH
Confidence 2 2233322111 222 58999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcC
Q 000159 952 MRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMT 1022 (2013)
Q Consensus 952 Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~ 1022 (2013)
||+-+..+|..+...+. .+.+++.+..-+.++ +|..+.-++.|+.+.+.-.+.. .....++..++.|+.
T Consensus 224 Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s 301 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLS 301 (675)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCC
Confidence 99999999999998762 456677777777665 5889999999999988765542 234556666888998
Q ss_pred CCCh-HHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 1023 DKSS-DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNR 1101 (2013)
Q Consensus 1023 D~~~-dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (2013)
|... .++..|+..-..++..++.+....-
T Consensus 302 ~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-------------------------------------------------- 331 (675)
T KOG0212|consen 302 DTEEMSIKEYAQMVNGLLLKLVSSERLKEE-------------------------------------------------- 331 (675)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhccc--------------------------------------------------
Confidence 8777 5777777555455554443211000
Q ss_pred CCccCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcc
Q 000159 1102 AISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS 1181 (2013)
Q Consensus 1102 s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs 1181 (2013)
.+-+ .-+| -+...+++
T Consensus 332 ------------------------id~~----------------------------~ii~------------vl~~~l~~ 347 (675)
T KOG0212|consen 332 ------------------------IDYG----------------------------SIIE------------VLTKYLSD 347 (675)
T ss_pred ------------------------cchH----------------------------HHHH------------HHHHHhhc
Confidence 0000 0111 23334455
Q ss_pred cCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHH
Q 000159 1182 TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261 (2013)
Q Consensus 1182 ~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L 1261 (2013)
..-..|+.+++=+.-.....+-.++.+.|-||--+..-+.|+.-.|+.+.|+.+..+..--.+-+ -..|+-.|
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~-------~~~fl~sL 420 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN-------LRKFLLSL 420 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc-------HHHHHHHH
Confidence 55567889998888888888888888899999998889999999999999999998654433332 27788888
Q ss_pred HHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHH
Q 000159 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYIL 1297 (2013)
Q Consensus 1262 ~~K~Gd~k~~vr~~v~~il~~i~~v~p~skvf~~l~ 1297 (2013)
++..-+-+--++.+--=|++++|...-+.+||..+.
T Consensus 421 L~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 421 LEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 888877666677777788899999999999998753
No 25
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.08 E-value=9e-08 Score=116.55 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=131.8
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHH
Q 000159 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2013)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (2013)
-+.++.-|+-...+..+..|+..+...+.+..+--+.--|...|+..|+.++..|-+.+|.|+.+.|+. .++-.
T Consensus 696 ILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq------dvL~~ 769 (975)
T COG5181 696 ILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ------DVLDI 769 (975)
T ss_pred hhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH------HHHHH
Confidence 456667788888899999888755444444333344555666677889999999999999999999976 67888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC-CCChhhhHHH-HH
Q 000159 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKP-AS 1018 (2013)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~p-l~ 1018 (2013)
+++.|+-+.-..|....-++.-+++.||+=.++|.+..-...+ +..+..+++..+.-.|+-++. +.+..-.+.| +-
T Consensus 770 LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP--e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlle 847 (975)
T COG5181 770 LLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP--EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLE 847 (975)
T ss_pred HHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc--hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999888888888889999999999999999888777766 456778888877766665543 2344555556 55
Q ss_pred hhcCCCChHHHHHHHHHHHHH
Q 000159 1019 IAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
.+|.|+++--|..|...+..+
T Consensus 848 DAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 848 DALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred hhhcccchHHHHHHHHHHHHH
Confidence 699999999999988766544
No 26
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.01 E-value=1.2e-06 Score=115.46 Aligned_cols=563 Identities=18% Similarity=0.134 Sum_probs=322.3
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000159 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2013)
Q Consensus 293 ~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2013)
.+...+-+.|..+...+..+.-..+.... -..+++.+...+ |.+.-|...+..=++.+....+ -..|...++|.+.
T Consensus 90 e~~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le 165 (759)
T KOG0211|consen 90 ELSNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLE 165 (759)
T ss_pred ccCchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHH
Confidence 34455566677777666554421111111 456777777777 7776555544444444333221 1256777888887
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh---cCCh-HHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000159 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---NKVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (2013)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~---~Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 448 (2013)
.-.-+....||+++.+++..+... .+-....+.+...+. ...| +-|.-++..+..+....+...+ -..+.|
T Consensus 166 ~l~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~ 240 (759)
T KOG0211|consen 166 LLATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRP 240 (759)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHH
Confidence 777888888999999999988764 332333333333322 1122 2355555666665554443222 266778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCC
Q 000159 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEA 528 (2013)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 528 (2013)
.......|..++||.++.+-++.+.+.++..... +.+.+.....
T Consensus 241 ~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~~~L--------------------------------- 284 (759)
T KOG0211|consen 241 IVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTLIQL--------------------------------- 284 (759)
T ss_pred HHHhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHHhhh---------------------------------
Confidence 8889999999999999999999998888762111 1111110000
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHh
Q 000159 529 SESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 608 (2013)
Q Consensus 529 ~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~ 608 (2013)
T Consensus 285 -------------------------------------------------------------------------------- 284 (759)
T KOG0211|consen 285 -------------------------------------------------------------------------------- 284 (759)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 000159 609 QLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (2013)
Q Consensus 609 ~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~ 688 (2013)
+.+..=..|+.|++.+.++..-+...++....+...+.. -..|.+..|.-..-+....+....+. . ..-...++.
T Consensus 285 -~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~-~~~~~~~~~ 359 (759)
T KOG0211|consen 285 -LRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-S-ATRTQLVPP 359 (759)
T ss_pred -hhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-c-cCcccchhh
Confidence 000111234555555554444322221111111111100 02344444433333333333332222 0 011122344
Q ss_pred HHhhhcChh--hhHHHHHHHHHHHhhhC----hhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHhCCCCCChhhH
Q 000159 689 ISERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (2013)
Q Consensus 689 LveKlgD~K--~r~~a~e~L~~l~e~~~----~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~l 759 (2013)
...-++|.. .|.++..-...++.... ++...+.+++.+ ..+.|+.|+......+......+|... .+..+
T Consensus 360 ~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~-ti~~l 438 (759)
T KOG0211|consen 360 VSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER-TISEL 438 (759)
T ss_pred HHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc-Ccccc
Confidence 444455542 23333333444444433 333333333322 246677777776666655555555321 23445
Q ss_pred HHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCC
Q 000159 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (2013)
Q Consensus 760 i~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~ 839 (2013)
++..... +.+-.+.||..-+..+..+ +.+... .
T Consensus 439 lp~~~~~-l~de~~~V~lnli~~ls~~---------------------------~~v~~v----~--------------- 471 (759)
T KOG0211|consen 439 LPLLIGN-LKDEDPIVRLNLIDKLSLL---------------------------EEVNDV----I--------------- 471 (759)
T ss_pred Chhhhhh-cchhhHHHHHhhHHHHHHH---------------------------HhccCc----c---------------
Confidence 5555554 6666677776555332111 111100 0
Q ss_pred CCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHH
Q 000159 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL 919 (2013)
Q Consensus 840 ~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l 919 (2013)
|. .-++..+.+.+.....|.+|++|.+.++.+-.++..-...+. + ..+...+...+.|.-..++..|.+.+
T Consensus 472 -g~-----~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~--~-~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 472 -GI-----STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF--D-EKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred -cc-----hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh--h-HHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 00 001112334455556677999999999999888764211111 1 22344455667787788999999999
Q ss_pred HHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhhHHHHHH
Q 000159 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFD 995 (2013)
Q Consensus 920 ~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~~~k~~p~~R~~~l~ 995 (2013)
..++...|..+. ...++|.++...++..-.+|.+...++..++..+|- +.++|.+.....++ .|.+|..++.
T Consensus 543 ~~l~~~~G~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak 618 (759)
T KOG0211|consen 543 PALVETFGSEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAK 618 (759)
T ss_pred HHHHHHhCcchh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHH
Confidence 999999996654 458899999999999889999999999999999985 44556666655566 5899999999
Q ss_pred HHHHHhccCCCCCChhhhHHHHHhhc-CCCChHHHHHHHHHHHHHHHHcChhH
Q 000159 996 WLSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1047 (2013)
Q Consensus 996 ~L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~L~~l~~~~G~~~ 1047 (2013)
+|...+..+.. +.....+.|+..+| .|.+.+||-.|..++..+..+.=+..
T Consensus 619 ~L~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 619 HLPKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESS 670 (759)
T ss_pred HHHHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhh
Confidence 99887765543 23456677765555 89999999999999998877665543
No 27
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.99 E-value=7.9e-06 Score=100.18 Aligned_cols=688 Identities=16% Similarity=0.221 Sum_probs=378.3
Q ss_pred hhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhch-----------
Q 000159 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAADA----------- 85 (2013)
Q Consensus 18 erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~v~~~~~----------- 85 (2013)
=+++...-..|.+|+..|.+.-.+- .....|++..+++.. -+.|.---..-+-++-++.=+.-...
T Consensus 175 LkvKNG~~~mR~~~lRiLtdkav~f--g~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~ 252 (975)
T COG5181 175 LKVKNGGKRMRMEGLRILTDKAVNF--GAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVG 252 (975)
T ss_pred hhcccCCchhhHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEee
Confidence 3566777888999999998875432 233456666655543 35665555555555555543322211
Q ss_pred ------hhhhh--HHHHHHHHHHhhc-C----C-C-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChh
Q 000159 86 ------DAGRY--AKEVCDAIAAKCL-T----G-R-------PKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAK 143 (2013)
Q Consensus 86 ------~~~~~--~~~v~~~LveK~l-~----~-k-------~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpK 143 (2013)
+..+. ..+|+..|+..|. + + | +=+|+..-.+.-.++..-..+.++.-|.... +.|.|+
T Consensus 253 pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~ 332 (975)
T COG5181 253 PLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWE 332 (975)
T ss_pred ccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchh
Confidence 11111 2456666666652 1 0 2 2233333222233332223344444443333 567999
Q ss_pred hHHHHHHHHHHHHHHhCCCCcC-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhC-hH-------
Q 000159 144 AVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKM-RD------- 214 (2013)
Q Consensus 144 v~~~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~L-k~------- 214 (2013)
.+-.|+.++.++..-.|..+++ ++++++.+.+++.|...-||=-+...+-.++...|+=-+ .. |+.. .|
T Consensus 333 aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygi-e~-fd~vl~pLw~g~~~ 410 (975)
T COG5181 333 ARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGI-EQ-FDEVLCPLWEGASQ 410 (975)
T ss_pred hhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcch-HH-HHHHHHHHHHHHHh
Confidence 9999999999999999998776 799999999999999999999998888888888886211 11 1111 11
Q ss_pred HHHHHHHHHHHhcCCCCCCCc-------cchhhhhHhhhhhccccCCCCCCCCCC---------CCCCCCCCCCCCCCCc
Q 000159 215 TMKKELEVELVNVSGTARPTR-------KIRAEQDKELGQELISEDVGPGPSEES---------TADVPPEIDEYELVDP 278 (2013)
Q Consensus 215 ~q~keLe~~f~k~~~~~~P~R-------~~rs~~~~~~~~ea~~~~~g~~~~~~~---------~~~~~~~iD~~dl~~~ 278 (2013)
.-=++|-. |=|.-|..-|.. ++|....- .-.+..+ ++++. -=...+.++|+-+.+.
T Consensus 411 hrgk~l~s-fLkA~g~iiplm~peYa~h~tre~m~i-v~ref~s------pdeemkk~~l~v~~~C~~v~~~tp~~lr~~ 482 (975)
T COG5181 411 HRGKELVS-FLKAMGFIIPLMSPEYACHDTREHMEI-VFREFKS------PDEEMKKDLLVVERICDKVGTDTPWKLRDQ 482 (975)
T ss_pred cCCchHHH-HHHHhccccccCChHhhhhhHHHHHHH-HHHHhCC------chhhcchhHHHHHHHHhccCCCCHHHHHHh
Confidence 00011111 111112212211 11111000 0000000 00000 0001122444433332
Q ss_pred ccccccCcchhhhhhhccCCHHHHHHH---------HHH--HHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHH
Q 000159 279 VDILTPLEKSGFWEGVKATKWSERKDA---------VAE--LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (2013)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~kWkeR~ea---------L~~--L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~ 347 (2013)
| . +.| -+..|.+|.+. +.. |.+.... ..+++.+..-+.|.--.-+..++.
T Consensus 483 v------~-pef----F~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--------~~v~~kil~~~~De~ep~r~m~a~ 543 (975)
T COG5181 483 V------S-PEF----FSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--------PRVSRKILEYYSDEPEPYRKMNAG 543 (975)
T ss_pred h------c-HHh----hchHHHhhhcccccccceeehhHHHHHHHcCC--------hHHHHHHHhhccCCcchhhhhhhH
Confidence 2 1 234 45679888765 111 1222221 234455555556665455555666
Q ss_pred HHHHHHHHhh-hcch-hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh----cCCChHhHHHHHHHHhhcCChHHHH
Q 000159 348 AIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA----GCLNLVDVVEDVKTSVKNKVPLVRS 421 (2013)
Q Consensus 348 ~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~----~~~~l~~il~~l~~~l~~Knp~vR~ 421 (2013)
+...+...|+ .+|+ .....++..++..|.+....+.- ...|..++... +...++.++..++..|+||.|.+|+
T Consensus 544 ~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~ 622 (975)
T COG5181 544 LVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRI 622 (975)
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccE-EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHH
Confidence 6666666665 3464 66778888888888876543321 11122221111 1245678888899999999999999
Q ss_pred HHHHHHHHHH---HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHH
Q 000159 422 LTLNWVTFCI---ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498 (2013)
Q Consensus 422 ~~l~~L~~~l---~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e 498 (2013)
.++..++.+. ..|.... .+.-+--++...++.-.|+|=-.-..|+-.+..+.+.+.+
T Consensus 623 ~aadl~~sl~~vlk~c~e~~---~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m----------------- 682 (975)
T COG5181 623 RAADLMGSLAKVLKACGETK---ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM----------------- 682 (975)
T ss_pred HHHHHHHHHHHHHHhcchHH---HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc-----------------
Confidence 9887766543 3333221 1233444556666666666544333333333333332211
Q ss_pred HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCC
Q 000159 499 MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLT 578 (2013)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~ 578 (2013)
+||..
T Consensus 683 -----------------------------------------------qpPi~---------------------------- 687 (975)
T COG5181 683 -----------------------------------------------QPPIS---------------------------- 687 (975)
T ss_pred -----------------------------------------------CCchh----------------------------
Confidence 01100
Q ss_pred CCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHH
Q 000159 579 EAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658 (2013)
Q Consensus 579 ~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~q 658 (2013)
+++| . |. |-++..+.+
T Consensus 688 ---------------------~ilP-~------------------------------------lt------PILrnkh~K 703 (975)
T COG5181 688 ---------------------GILP-S------------------------------------LT------PILRNKHQK 703 (975)
T ss_pred ---------------------hccc-c------------------------------------cc------HhhhhhhHH
Confidence 0000 0 00 011222334
Q ss_pred HHHHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHhhhcC-hh-hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhH
Q 000159 659 VQQQVIEVINYLAATATKF-P-KKCVVLCLLGISERVAD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 734 (2013)
Q Consensus 659 V~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKlgD-~K-~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv 734 (2013)
|....+.++..+..+.+.. + +.|+..| =.|+|-|.. .| +|..|.+++..|+++.||+-|+..|+..+. ...-..
T Consensus 704 v~~nti~lvg~I~~~~peyi~~rEWMRIc-feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-vqeRq~ 781 (975)
T COG5181 704 VVANTIALVGTICMNSPEYIGVREWMRIC-FELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-VQERQQ 781 (975)
T ss_pred HhhhHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-HHHHHh
Confidence 4444555555555544432 2 2233333 345555544 23 789999999999999999999999998872 222223
Q ss_pred HHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHh
Q 000159 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 814 (2013)
Q Consensus 735 ~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~ 814 (2013)
|..+--.++-+.+-.|.- .+++.+..- ...++.+|.+...+.++-||.++|+.-.+|.-.
T Consensus 782 RvctsvaI~iVae~cgpf-----sVlP~lm~d-Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~-------------- 841 (975)
T COG5181 782 RVCTSVAISIVAEYCGPF-----SVLPTLMSD-YETPEANVQNGVLKAMCFMFEYIGQASLDYVYS-------------- 841 (975)
T ss_pred hhhhhhhhhhhHhhcCch-----hhHHHHHhc-ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 333333343333444442 345555443 678899999999999999999999876666533
Q ss_pred hCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CCh
Q 000159 815 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGT 893 (2013)
Q Consensus 815 k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~-~~~ 893 (2013)
|+|-+.+.+.|.+---|..|+.-+.-+.-.+. .... ..+
T Consensus 842 ---------------------------------------itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~-gtg~eda~ 881 (975)
T COG5181 842 ---------------------------------------ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP-GTGDEDAA 881 (975)
T ss_pred ---------------------------------------hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC-CcccHHHH
Confidence 34445555666777778888887777764321 1110 001
Q ss_pred hhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000159 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 894 ~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2013)
-.|+..|-.-+-|...-|.+...+++..+++++|+. .++..+...|=.....||..-....+.+.
T Consensus 882 IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g------~~m~Yv~qGLFHPs~~VRk~ywtvyn~my 946 (975)
T COG5181 882 IHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG------AMMKYVQQGLFHPSSTVRKRYWTVYNIMY 946 (975)
T ss_pred HHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH------HHHHHHHHhccCchHHHHHHHHHHHhhhh
Confidence 234445544456777888889999999999999976 23344455556677778888766666554
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.3e-05 Score=105.31 Aligned_cols=286 Identities=15% Similarity=0.185 Sum_probs=189.1
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC---CCcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCch
Q 000159 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 203 (2013)
Q Consensus 127 ~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~---~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~ 203 (2013)
..+.+.|..+..+-||..+.+..-||-..++.-|. .+...+.|+..+..+|++.|.=+.+.|..-++-+|- +|+.
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lgd~- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LGDS- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cCCc-
Confidence 35556667788899999999999999999998884 244568899999999999999999998777777774 3432
Q ss_pred hhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhH-hhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 000159 204 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDK-ELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDIL 282 (2013)
Q Consensus 204 l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~-~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl 282 (2013)
.+|..+.+.|-+.+.. |..+- .+.. +.+ -.+...-|..| +...+.-|
T Consensus 895 -------~~k~~LV~sL~~tl~~--Gkr~~------~~vs~eTe-lFq~G~Lg~Tp-------~Gg~isTY--------- 942 (1702)
T KOG0915|consen 895 -------SLKKSLVDSLVNTLTG--GKRKA------IKVSEETE-LFQEGTLGKTP-------DGGKISTY--------- 942 (1702)
T ss_pred -------hhHHHHHHHHHHHHhc--ccccc------ceeccchh-cccCCcCCCCC-------CCCcchHH---------
Confidence 2333334444333322 21110 0000 000 00000011111 11122222
Q ss_pred ccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch
Q 000159 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS 361 (2013)
Q Consensus 283 ~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (2013)
++|..|++. +. -.+++--+...-+ .+-=+-...|+--++.|++.-+...+
T Consensus 943 ------------------------KELc~LASd--l~---qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~ 993 (1702)
T KOG0915|consen 943 ------------------------KELCNLASD--LG---QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLE 993 (1702)
T ss_pred ------------------------HHHHHHHhh--cC---ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhh
Confidence 233344321 00 1122222222222 11112234556666777777788889
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
||.+.++|-|.-.=-|..+.|+++....-++++.-. .-.+.+|+++++.+|.+|-|+||+.++..|..+++..+..
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH
Confidence 999999999999889999999998888777776420 0125678889999999999999999999999999998877
Q ss_pred HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.+.+.++.+-.++...++|-+..||+||-.+...+.++
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999999998877655544
No 29
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.3e-08 Score=116.85 Aligned_cols=182 Identities=18% Similarity=0.226 Sum_probs=158.8
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000159 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2013)
-+..+.+.+|....++|..++.|.. ++......+++++-++.+-+++.|+.|...||.|++.|+..+.+.+......++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999874 777777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHH
Q 000159 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYV 447 (2013)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~ 447 (2013)
-.|+.+-.+.|..||+++..||.+++.+ .++..+++.|..+++|.||.+|..++.-+.+|+....- .....+...++
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 78899999999999999999998877666676665531 12234567788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
+.+..-+.|.-|++|++|.-.+....
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~ 276 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELK 276 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHH
Confidence 89999999999999999987665443
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.72 E-value=1.4e-06 Score=121.24 Aligned_cols=270 Identities=18% Similarity=0.131 Sum_probs=159.7
Q ss_pred HHHHhhhcC--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 000159 687 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (2013)
Q Consensus 687 ~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~ 764 (2013)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ .+.++.||..++..|..+.+.... .+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------APALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------hHHHH
Confidence 344444444 457777777766553 334556666554 778888888888887666432211 12233
Q ss_pred hcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCC
Q 000159 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844 (2013)
Q Consensus 765 ~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~ 844 (2013)
.. |++.++.||.+|+..|+.+...--..+...|.+-.+.+....-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~---------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV---------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc----------------------------
Confidence 34 7778888888888888775411000111122222222111111111110
Q ss_pred CCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 000159 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 924 (2013)
Q Consensus 845 lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~ 924 (2013)
. -.+.++..+.|.++.+|..+.+.|..+-.. . ...+..|...++|.+..|+..|+..|+.+.
T Consensus 742 -~-------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g- 803 (897)
T PRK13800 742 -D-------DVESVAGAATDENREVRIAVAKGLATLGAG--------G-APAGDAVRALTGDPDPLVRAAALAALAELG- 803 (897)
T ss_pred -c-------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence 0 012355667888888888888777655321 0 223556667778888888888887776552
Q ss_pred HhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccC
Q 000159 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (2013)
Q Consensus 925 alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~ 1004 (2013)
.. ..+.+.++..|.|....||.+|..+|..+ +....++.+...|.++ ++.+|.+++.-|...
T Consensus 804 ---~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~---- 865 (897)
T PRK13800 804 ---CP-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW---- 865 (897)
T ss_pred ---Cc-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----
Confidence 11 12345577788888888888888887643 3345567777888776 578888888777652
Q ss_pred CCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000159 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
. ........+..+++|.+++||..|..+|.
T Consensus 866 ~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11234455667788888888888887774
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.70 E-value=0.0001 Score=97.76 Aligned_cols=502 Identities=17% Similarity=0.186 Sum_probs=280.8
Q ss_pred hhhhccC--CHHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 291 WEGVKAT--KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 291 ~~~l~s~--kWkeR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
.+.+++. +-.+|++++..|..+. .+.. ...++..+.+.+...+..+...+--.+..++. .=...+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~l~kli~~~~~G~~-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~----~~~~~~~l~ 80 (526)
T PF01602_consen 10 AKILNSFKIDISKKKEALKKLIYLMMLGYD-----ISFLFMEVIKLISSKDLELKRLGYLYLSLYLH----EDPELLILI 80 (526)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT----TSHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----cchhHHHHH
Confidence 3344555 7788999999887754 3332 23344455556666666654444333333322 112347788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-H
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-Y 446 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l 446 (2013)
+..+.+-+.++++.+|..|-.++..+... .-.+.+++.|...+.|++|.||..++..+.+++...+. . ++. +
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~----~~~~~ 153 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-L----VEDEL 153 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-C----HHGGH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-H----HHHHH
Confidence 99999999999999999888888876532 23456778888999999999999999999998876433 2 233 7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCC
Q 000159 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSV 526 (2013)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 526 (2013)
++.+.+++.|.++.|+.+|..++..+ +. .++....++..+- ..+...+... .| -.+
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~~~~~~~~~~----~~L~~~l~~~-------~~--~~q--------- 209 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDSYKSLIPKLI----RILCQLLSDP-------DP--WLQ--------- 209 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHHHTTHHHHHH----HHHHHHHTCC-------SH--HHH---------
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-cc-CcchhhhhHHHHH----HHhhhccccc-------ch--HHH---------
Confidence 99999999999999999999999888 21 1111111222211 1222222100 00 000
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHH
Q 000159 527 EASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADT 606 (2013)
Q Consensus 527 ~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l 606 (2013)
-..-..+..- .....++... ..+-+.+
T Consensus 210 ---------~~il~~l~~~-----------------------------------------~~~~~~~~~~---~~~i~~l 236 (526)
T PF01602_consen 210 ---------IKILRLLRRY-----------------------------------------APMEPEDADK---NRIIEPL 236 (526)
T ss_dssp ---------HHHHHHHTTS-----------------------------------------TSSSHHHHHH---HHHHHHH
T ss_pred ---------HHHHHHHHhc-----------------------------------------ccCChhhhhH---HHHHHHH
Confidence 0000000000 0001111100 1122456
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHH
Q 000159 607 VGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCL 686 (2013)
Q Consensus 607 ~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il 686 (2013)
...+.+.++..+.+++.-+..+.....-.....+.+.+++. +++..+.-.+|+.+..++...+.... .. .+.
T Consensus 237 ~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~-~~-~~~ 308 (526)
T PF01602_consen 237 LNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVF-NQ-SLI 308 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHG-TH-HHH
T ss_pred HHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhh-hh-hhh
Confidence 67777888888888888777443222211122344555543 33344556677777766654311111 01 111
Q ss_pred HHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhc
Q 000159 687 LGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDT 766 (2013)
Q Consensus 687 ~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~ 766 (2013)
-..+..-.|.-+|..+.++|..++.......++..+.+.+....++.++.+++..+..+...|.. +...+++.+.++
T Consensus 309 ~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---~~~~~v~~l~~l 385 (526)
T PF01602_consen 309 LFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---DAEWYVDTLLKL 385 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---SHHHHHHHHHHH
T ss_pred hheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---hHHHHHHHHHHh
Confidence 11222223445777788888888877777777777777764444666777777777777777633 223344444443
Q ss_pred CCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 000159 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (2013)
Q Consensus 767 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lp 846 (2013)
+...+..|...++
T Consensus 386 -l~~~~~~~~~~~~------------------------------------------------------------------ 398 (526)
T PF01602_consen 386 -LEISGDYVSNEII------------------------------------------------------------------ 398 (526)
T ss_dssp -HHCTGGGCHCHHH------------------------------------------------------------------
T ss_pred -hhhccccccchHH------------------------------------------------------------------
Confidence 3333333333222
Q ss_pred CcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-hhHHHHHHHHHHHHHHHHH
Q 000159 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASA 925 (2013)
Q Consensus 847 r~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~a 925 (2013)
..+..++.. .+.....++..|...+.+ ....+...++-++|+.+..
T Consensus 399 ----------------------------~~i~~ll~~-----~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 445 (526)
T PF01602_consen 399 ----------------------------NVIRDLLSN-----NPELREKILKKLIELLEDISSPEALAAAIWILGEYGEL 445 (526)
T ss_dssp ----------------------------HHHHHHHHH-----STTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred ----------------------------HHHHHHhhc-----ChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence 233333321 011112222223322222 2334566777777777666
Q ss_pred hChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000159 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 926 lg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll~~l~~~L~~~k~~p~~R~~~l~~L~ 998 (2013)
... .. ....++..+.+.+.+....|+..+..++..+....+.. .+++.+......+..++++|..+..++.
T Consensus 446 ~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 446 IEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred ccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 544 11 56778888888999988999999999999999887633 4455555555411226888887777664
No 32
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=0.0011 Score=88.66 Aligned_cols=656 Identities=14% Similarity=0.154 Sum_probs=355.1
Q ss_pred CCC-CCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhc-ch-hhhHhHHHHHHHHhccCcHHHHHHHHHH
Q 000159 315 TKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQT 389 (2013)
Q Consensus 315 ~pk-i~~~~~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~-f~-~~~~~llp~LL~klkdkk~~V~~aa~~a 389 (2013)
.|+ +.-..|+++...|...+. .+|-.|...++.||+.|-..-+.. +. +-....+-.++.-.-++++.||.++..+
T Consensus 82 VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~ 161 (1176)
T KOG1248|consen 82 VPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRG 161 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 454 333568888888888888 889999999999999988764422 32 3356677788888889999999999999
Q ss_pred HHHHHHhcCCChHhHHH-------HHHHHhhc-CChHHHHHHHHH---HHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC
Q 000159 390 LQAMHKAGCLNLVDVVE-------DVKTSVKN-KVPLVRSLTLNW---VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (2013)
Q Consensus 390 L~ai~~~~~~~l~~il~-------~l~~~l~~-Knp~vR~~~l~~---L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~ 458 (2013)
+.+++.+.|+.++..-| ..+.-+.. -++..-..++++ |...+..|+... ++.++..+..++.-++
T Consensus 162 i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~l----i~sl~e~lL~i~~~s~ 237 (1176)
T KOG1248|consen 162 IAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPL----IKSLCEVLLNITTESP 237 (1176)
T ss_pred HHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhhcccch
Confidence 99999863333222111 11222221 113333344444 344444555443 4888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccc
Q 000159 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (2013)
Q Consensus 459 ~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 538 (2013)
..|+-.+++||..+.+.-.. .|+...-.++-.++-..+ |+. ..+-. .-.=++.
T Consensus 238 v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~---------~D~~~-t~~W~~v-- 290 (1176)
T KOG1248|consen 238 VLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSE---------NDDLL-TVAWLKV-- 290 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCc---------cchHH-HHHHHHH--
Confidence 99999999999887765443 122222222322222110 000 00000 0000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHH
Q 000159 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 618 (2013)
Q Consensus 539 ~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~R 618 (2013)
+..+ . ... ..+..|-+-..+..++ .-+.+ +..+.-+++
T Consensus 291 --~~~~----------------------~-------~~l---------a~~q~~~~~~~~~~~~-~~~~t-~~~s~~~e~ 328 (1176)
T KOG1248|consen 291 --LNEA----------------------H-------DIL---------ATLQEEKALQALPRLF-SLFFT-ILESLIEEL 328 (1176)
T ss_pred --HHHH----------------------H-------HHH---------HHhCHHHHHHhhhhhh-hHHHH-HHhcccHHH
Confidence 0000 0 000 0001111222222222 23344 555666666
Q ss_pred HHHHHHHHHHHHhccCc--chHHHH-HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC
Q 000159 619 LEAISSLRQQVEAVQNL--DQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (2013)
Q Consensus 619 l~ale~L~~~v~~~~~~--~~~~~~-lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD 695 (2013)
+++.......+-..... +..|.. +-.+|.. .-..|...+|+++..+.+.|+..+...+-.++..|.+.=++
T Consensus 329 ~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~------kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~ 402 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVTVIDALCSKQLHSLLDY------KFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRAS 402 (1176)
T ss_pred HHHHHHHHHHHhcccCcccHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcC
Confidence 66655544333222111 111222 2222221 12346677788888888888777666777788887774333
Q ss_pred --hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC-C--ChhhHHHHHHhc----
Q 000159 696 --IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-L--KLKDLIDFCKDT---- 766 (2013)
Q Consensus 696 --~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-l--~~k~li~~l~~~---- 766 (2013)
.-.+....+|+.+...+.||+.|+..+==.+ ++-.....=.||--++.++-... + -...++++...+
T Consensus 403 ~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~ 478 (1176)
T KOG1248|consen 403 PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKA 478 (1176)
T ss_pred CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888888999998876552222 12222223346666666543211 1 012223322211
Q ss_pred -CCCCCcH---hHHHHHHHHH-----------------HHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCC-------
Q 000159 767 -GLQSSAA---ATRNATIKLL-----------------GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF------- 818 (2013)
Q Consensus 767 -gL~~~n~---~VR~aA~~ll-----------------~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~------- 818 (2013)
++....- .+++..-++. ..++..+|..+.. =.++++.+...|..-.+.+..
T Consensus 479 ~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~ 557 (1176)
T KOG1248|consen 479 KKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAEN 557 (1176)
T ss_pred HhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHH
Confidence 0111111 1122222211 1112222221110 023444444444444443310
Q ss_pred -------------------CCCCCCcccc-----------c------Ccccc-----CCC---CCCCCCC----------
Q 000159 819 -------------------EGTVVPKKTV-----------R------ASEST-----SSV---SSGGSDG---------- 844 (2013)
Q Consensus 819 -------------------~~~p~p~R~~-----------r------~~~~~-----~s~---~~~~~d~---------- 844 (2013)
..+++..|.. + +..+. .+. .++.++.
T Consensus 558 ~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slL 637 (1176)
T KOG1248|consen 558 KEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLL 637 (1176)
T ss_pred HHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHH
Confidence 0011111000 0 00000 000 0000000
Q ss_pred ---------CCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhcccchhHHHHH
Q 000159 845 ---------LPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (2013)
Q Consensus 845 ---------lpr~dIs~~L~~~ll~~l~d-~~Wk~R~eale~l~~il~~a-~~~I~~~~~~eL~~~L~~rL~DsN~~V~~ 913 (2013)
.+-..++... .+...... .+-++++.+.+-|..++... ..........+++..|..-++++....+.
T Consensus 638 dl~~~~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~ 715 (1176)
T KOG1248|consen 638 DLLIALAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQA 715 (1176)
T ss_pred HHHHhhhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 0000111100 11122222 25677888888888887520 01111222467888888888999999999
Q ss_pred HHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHH--Hhc---C-------chhhHHHHHHHHh
Q 000159 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL--AAV---H-------LDKMVPYVTTALT 981 (2013)
Q Consensus 914 ~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~--~~~---g-------l~~ll~~l~~~L~ 981 (2013)
..|.++..|...++..+..+....+|-++=.+++.+..-|+.+.+||..++ ... | +..+++.|...+.
T Consensus 716 ~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 716 SRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Confidence 999999999999999988999999998888889999999999999999988 321 3 2345556666655
Q ss_pred cCCCChhhHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000159 982 DAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (2013)
Q Consensus 982 ~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~ 1058 (2013)
.+ ....+...+-.+...+.+... ..-+..++..+..+|...+++||++|...+..+...+++.-+.+++..|=|.
T Consensus 796 gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 796 GD--STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred cc--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 44 234444423333334433322 3345667777888999999999999999999999999998887776555443
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.66 E-value=3e-05 Score=102.69 Aligned_cols=460 Identities=16% Similarity=0.160 Sum_probs=298.5
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (2013)
....+.+++-..|+=+.-.+..+.... ++-.--++..|.+=+.+.|..++..|+++++.++. ...++.++|
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~ 117 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIP 117 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHH
Confidence 334457788888887766666665311 11123467788888889999999999999999872 345788999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~-il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 448 (2013)
.+.+.+.++++.||..|..|+..++......+.. +++.+...+.+++|.|+..++..+..+ .+++......+..+..
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHH
Confidence 9999999999999999999999999872233455 789999999999999999999998887 3443332245677778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhH--HHHHhhccHHHH----HHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000159 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL--ERSIEKLDDVRR----NKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2013)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~--~~~l~~Ld~~~~----kki~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2013)
.+.+.+.+.+|-++-...+++..+...-... . ..+++.+.+... .-+-+++.-
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-~~~~~~i~~l~~~l~s~~~~V~~e~~~~-------------------- 254 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPED-ADKNRIIEPLLNLLQSSSPSVVYEAIRL-------------------- 254 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhh-hhHHHHHHHHHHHhhccccHHHHHHHHH--------------------
Confidence 8888889999998888777776544221111 1 122322222111 000111000
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000159 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2013)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l 602 (2013)
... .. .+.+ + ...+
T Consensus 255 -------------------i~~--------------------------------l~----------~~~~-~----~~~~ 268 (526)
T PF01602_consen 255 -------------------IIK--------------------------------LS----------PSPE-L----LQKA 268 (526)
T ss_dssp -------------------HHH--------------------------------HS----------SSHH-H----HHHH
T ss_pred -------------------HHH--------------------------------hh----------cchH-H----HHhh
Confidence 000 00 0111 1 1112
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhh
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~-~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~ 681 (2013)
-..+...|.++++..|.-+++.|..+.... .... .....+..+. .|.+..|...+++++..++.. ..
T Consensus 269 ~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n 336 (526)
T PF01602_consen 269 INPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SN 336 (526)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HH
T ss_pred HHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cc
Confidence 356778889999999999999998887664 2221 2233333332 356677899999999888763 35
Q ss_pred HHHHHHHHHhhhc---ChhhhHHHHHHHHHHHhhhCh--hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCCh
Q 000159 682 VVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756 (2013)
Q Consensus 682 ~~~il~~LveKlg---D~K~r~~a~e~L~~l~e~~~~--~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~ 756 (2013)
+..++..+..-+. |...+..+...+..+++.+.+ ++.++.+++.+ ...+..+..+++..+..++...... -
T Consensus 337 ~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~ 412 (526)
T PF01602_consen 337 VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---R 412 (526)
T ss_dssp HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---H
T ss_pred hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---h
Confidence 6667777777663 556888999999999998754 57888888876 5667788899999999999775432 1
Q ss_pred hhHHHHHHhcCCC-CCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccC
Q 000159 757 KDLIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (2013)
Q Consensus 757 k~li~~l~~~gL~-~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~ 835 (2013)
..++..+... +. -.++.++.+++.++|+....... .+ ..+.++..+-
T Consensus 413 ~~~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~-----~~-~~~~~~~~l~------------------------- 460 (526)
T PF01602_consen 413 EKILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN-----TE-SAPDILRSLI------------------------- 460 (526)
T ss_dssp HHHHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT-----TT-HHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc-----cc-cHHHHHHHHH-------------------------
Confidence 2334444333 44 36788999999999987655543 00 1122222222
Q ss_pred CCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhccc--chhHHHH
Q 000159 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLY--DSNKNLV 912 (2013)
Q Consensus 836 s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~-~~~~eL~~~L~~rL~--DsN~~V~ 912 (2013)
+...+..-.+|...+..+.++... ... ....++...+..... +.|..|+
T Consensus 461 ------------------------~~~~~~~~~vk~~ilt~~~Kl~~~----~~~~~~~~~i~~~~~~~~~~~s~~~evr 512 (526)
T PF01602_consen 461 ------------------------ENFIEESPEVKLQILTALAKLFKR----NPENEVQNEILQFLLSLATEDSSDPEVR 512 (526)
T ss_dssp ------------------------HHHTTSHHHHHHHHHHHHHHHHHH----SCSTTHHHHHHHHHHCHHHHS-SSHHHH
T ss_pred ------------------------HhhccccHHHHHHHHHHHHHHHhh----CCchhhHHHHHHHHHHHhccCCCCHHHH
Confidence 222333345677788888887752 222 122467777777776 6799999
Q ss_pred HHHHHHHHHHH
Q 000159 913 MATLITLGAVA 923 (2013)
Q Consensus 913 ~~Al~~l~~La 923 (2013)
+.|...+..+-
T Consensus 513 ~Ra~~y~~ll~ 523 (526)
T PF01602_consen 513 DRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99998887654
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=2.6e-06 Score=118.59 Aligned_cols=242 Identities=20% Similarity=0.199 Sum_probs=170.0
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhC--hhHH
Q 000159 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (2013)
Q Consensus 718 Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G--~~l~ 795 (2013)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456666665 799999999999998764 32 3466777777 999999999999999987743222 1223
Q ss_pred hhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000159 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2013)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2013)
..|.+-.|.+....-..+..+.. . -+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~---------------------------------~-~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA---------------------------------G-DAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc---------------------------------C-CHHHHHHHhcCCCHHHHHHHHH
Confidence 33333223222222222221100 0 0235677899999999999999
Q ss_pred HHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHH
Q 000159 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (2013)
Q Consensus 876 ~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~a 955 (2013)
.|..+- . ...|...+.|.+..|+..++..|+.+...- ...++.++..++|.++.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHH
Confidence 887531 1 134567799999999999999888765321 122677889999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHH
Q 000159 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (2013)
Q Consensus 956 a~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~ 1035 (2013)
|..+|..+.. ...+.+.+..+|.++ ++.+|..++..|... + ....+.+|..+|.|.+.+||.+|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~----~~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----A----ADVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----c----ccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999977632 233456688889876 589999999888642 1 13455779999999999999999999
Q ss_pred HHHH
Q 000159 1036 IVEI 1039 (2013)
Q Consensus 1036 L~~l 1039 (2013)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
No 35
>PRK09687 putative lyase; Provisional
Probab=98.62 E-value=3e-06 Score=101.79 Aligned_cols=147 Identities=12% Similarity=0.063 Sum_probs=107.5
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (2013)
..+...+.|++|.+|..++..|..+ . + .+.+..|...|+|.+..|+..|+..++.+. ...+
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg~~--------~--~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--------~~~~ 191 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALSVI--------N--D-EAAIPLLINLLKDPNGDVRNWAAFALNSNK--------YDNP 191 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHhcc--------C--C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------CCCH
Confidence 3455667888999999988887532 1 1 567888888888999999998888888761 1134
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHH
Q 000159 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2013)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2013)
..++.|+..|.|.+..||..|..+|.. ++-...+|.|...|+++ .+|..++.-|.+ ++. ...++
T Consensus 192 ~~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~----~~~~~a~~ALg~----ig~----~~a~p 255 (280)
T PRK09687 192 DIREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG----TVGDLIIEAAGE----LGD----KTLLP 255 (280)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC----chHHHHHHHHHh----cCC----HhHHH
Confidence 677888889999999999998888866 35567888888888865 256665555543 222 45666
Q ss_pred HHHhhcC-CCChHHHHHHHHHHH
Q 000159 1016 PASIAMT-DKSSDVRKAAEACIV 1037 (2013)
Q Consensus 1016 pl~~~L~-D~~~dVR~aA~~~L~ 1037 (2013)
.+...++ +.++.||..|.+++.
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHh
Confidence 6777774 888899988887764
No 36
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=6e-05 Score=99.73 Aligned_cols=371 Identities=16% Similarity=0.104 Sum_probs=243.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChh-----HHHHHHHHH
Q 000159 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG-----FIFERLYKI 725 (2013)
Q Consensus 653 ~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~-----~Vl~~L~~~ 725 (2013)
.|.+..|...+-+-+..++...++ ......+++.++.-.-|. -+|..|.+.+..+.+.+..+ .+.+.++..
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~ 324 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQA 324 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Confidence 455555655555544444443222 223445566666666664 48999999999999987766 455555554
Q ss_pred hhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHH--hhhhhccH
Q 000159 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK--GFLADVKP 803 (2013)
Q Consensus 726 l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~--~~L~~lkp 803 (2013)
.+.++++++.-...+...+...||.+.-. ..+....... +++...++|.++..-...+..+...+-. ...+.+-|
T Consensus 325 -~~d~~~~v~~~~~~~~~~L~~~~~~~~~~-~~~~~~~~~l-~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp 401 (759)
T KOG0211|consen 325 -VEDGSWRVSYMVADKFSELSSAVGPSATR-TQLVPPVSNL-LKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP 401 (759)
T ss_pred -hcChhHHHHHHHhhhhhhHHHHhccccCc-ccchhhHHHH-hcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH
Confidence 37899999999999999999999984322 2333334444 7888889999998888877776653211 11233345
Q ss_pred HHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 000159 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE 883 (2013)
Q Consensus 804 ~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~ 883 (2013)
.++..+.+.-..+. +... +...+....+|...-...+.+.++..+.|..-.+|....+.+..+..
T Consensus 402 ~~~~lv~d~~~~vr------------~a~a--~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~- 466 (759)
T KOG0211|consen 402 EVQVLVLDNALHVR------------SALA--SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE- 466 (759)
T ss_pred HHHHHHhcccchHH------------HHHh--ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh-
Confidence 54444443222111 1000 00011122333333344466778888999999999998876644432
Q ss_pred ccccCCCCC-hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000159 884 ANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (2013)
Q Consensus 884 a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2013)
.+.-+.... -..+++++...-.|.++.++...+..+..++.-.|..|-. ..+.+.+..-+-|....+|.+|...+..
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~--~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD--EKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh--HHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 222222221 2457788888889999999999999999999999855432 2356666777889999999999999999
Q ss_pred HHHhcCc----hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHH
Q 000159 963 WLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (2013)
Q Consensus 963 i~~~~gl----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~ 1038 (2013)
++...|. ..+++.+.....+. +--.|..++.-+.....-.+..-....+++++.....|..++||-.+.+.|..
T Consensus 545 l~~~~G~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 545 LVETFGSEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred HHHHhCcchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 9999993 33445455554444 34678888877775555454433345677778888999999999999999998
Q ss_pred HHHHcChhH
Q 000159 1039 ILRAGGQET 1047 (2013)
Q Consensus 1039 l~~~~G~~~ 1047 (2013)
++..+-...
T Consensus 623 i~~~L~~~~ 631 (759)
T KOG0211|consen 623 ILKLLDESV 631 (759)
T ss_pred HHhhcchHH
Confidence 887776643
No 37
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.60 E-value=0.0011 Score=81.63 Aligned_cols=467 Identities=14% Similarity=0.156 Sum_probs=264.9
Q ss_pred HHhcccCHHHHHHHHHHHHHHHH-----Hhh-----------hcchh-hhHhHHHHHHHHhccCcH-------HHHHHHH
Q 000159 332 KLITDVNIAVAVEAIQAIGNLAR-----GLR-----------THFSG-SSRFLLPVLLEKLKEKKP-------TVAESLT 387 (2013)
Q Consensus 332 k~l~D~N~~V~~~A~~~l~~La~-----~L~-----------~~f~~-~~~~llp~LL~klkdkk~-------~V~~aa~ 387 (2013)
..++..|-.|...|...-..++. .+- ..|.. -+..++|.||+.+-...+ ++.-++.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 34557888887777665544443 111 22432 255699999998844222 4777888
Q ss_pred HHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000159 388 QTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (2013)
Q Consensus 388 ~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 466 (2013)
.||.-+... +-.=+..++..+-..+++.+|.-|..+.-.+...+..-....+.+++++.+|.+...++|+.--|.+.+.
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 898877766 1111344666666778899999999999899988877666777788999999999999999999999999
Q ss_pred HHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCC
Q 000159 467 SVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (2013)
Q Consensus 467 ~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (2013)
.||+.+..++.+- ++|-. .|.+...+.+....+.
T Consensus 430 wc~g~iad~va~~-i~p~~-Hl~~~vsa~liGl~D~-------------------------------------------- 463 (858)
T COG5215 430 WCFGAIADHVAMI-ISPCG-HLVLEVSASLIGLMDC-------------------------------------------- 463 (858)
T ss_pred HHHHHHHHHHHHh-cCccc-cccHHHHHHHhhhhcc--------------------------------------------
Confidence 9999998887753 22211 1111111111000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHH
Q 000159 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLR 626 (2013)
Q Consensus 547 P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~ 626 (2013)
|- .........+.+...+ ++ +.++.
T Consensus 464 p~----------------------------------~~~ncsw~~~nlv~h~----a~----------------a~~~~- 488 (858)
T COG5215 464 PF----------------------------------RSINCSWRKENLVDHI----AK----------------AVREV- 488 (858)
T ss_pred ch----------------------------------HHhhhHHHHHhHHHhh----hh----------------hhccc-
Confidence 00 0000000001000000 00 00000
Q ss_pred HHHHhccCcchHHHHHHHHHhcCC--CCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHH
Q 000159 627 QQVEAVQNLDQSVEILVRLVCMLP--GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704 (2013)
Q Consensus 627 ~~v~~~~~~~~~~~~lv~~L~~~p--gl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e 704 (2013)
..........|+..|.+.- -.+|+|. ....+++|..++..+++-.......+...+.+|++.
T Consensus 489 -----~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~--R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~--------- 552 (858)
T COG5215 489 -----ESFLAKFYLAILNALVKGTELALNESNL--RVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE--------- 552 (858)
T ss_pred -----cchhHHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH---------
Confidence 0001111233333332211 1456665 456788888888876553223333344444444433
Q ss_pred HHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhh-HHHHHHhcCCCCCcHhH-HHHHHHH
Q 000159 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-LIDFCKDTGLQSSAAAT-RNATIKL 782 (2013)
Q Consensus 705 ~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~-li~~l~~~gL~~~n~~V-R~aA~~l 782 (2013)
++......+..+- + .-.-.++..-+..|..+|..++.+.-++.+ ++.++... ++.+++.+ -.-....
T Consensus 553 ~isv~~q~l~~eD---~-------~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~-les~~~t~~~~dV~~a 621 (858)
T COG5215 553 CISVLGQILATED---Q-------LLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI-LESTKPTTAFGDVYTA 621 (858)
T ss_pred HHHHhhhhhhhHH---H-------HHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HhccCCchhhhHHHHH
Confidence 2222221111110 0 011234556678888899999986555555 77777666 77776543 2223333
Q ss_pred HHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhc
Q 000159 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862 (2013)
Q Consensus 783 l~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l 862 (2013)
++.|...+|..+..|+..+.|-+ .+.+
T Consensus 622 Isal~~sl~e~Fe~y~~~fiPyl-----------------------------------------------------~~al 648 (858)
T COG5215 622 ISALSTSLEERFEQYASKFIPYL-----------------------------------------------------TRAL 648 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-----------------------------------------------------HHHh
Confidence 33344344444444443333333 3333
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch--hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHH
Q 000159 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2013)
Q Consensus 863 ~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (2013)
...+..+-..++-.+..+.+.-+..+.+.- ..++..|.+.|+.+ ...+.-..|.+++.||.++|.+|.+|+..++..
T Consensus 649 n~~d~~v~~~avglvgdlantl~~df~~y~-d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L 727 (858)
T COG5215 649 NCTDRFVLNSAVGLVGDLANTLGTDFNIYA-DVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMML 727 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444455566677777664444454442 56788888888654 456778889999999999999999999888766
Q ss_pred HHHHhC-----------CCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHH
Q 000159 941 ILKCLG-----------DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTAL 980 (2013)
Q Consensus 941 ll~~L~-----------D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L 980 (2013)
+...-. |=...+++....+...+..... ++.++|++....
T Consensus 728 ~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif 780 (858)
T COG5215 728 FQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIF 780 (858)
T ss_pred HHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHH
Confidence 554332 1112456666666666666665 677888655443
No 38
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.013 Score=79.03 Aligned_cols=754 Identities=13% Similarity=0.089 Sum_probs=385.0
Q ss_pred hHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCc
Q 000159 128 VFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 202 (2013)
Q Consensus 128 ~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~ 202 (2013)
.....|.+.+. +.|-.++-.++.||..+|+..+.+. .+.+..+-.+..+.-|..+.||.+|...+..+.. |+.
T Consensus 93 ~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~--~p~ 170 (1176)
T KOG1248|consen 93 DTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLK--GPP 170 (1176)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHc--CCC
Confidence 34555555555 8899999999999999998877643 4567888889999999999999999998877764 221
Q ss_pred hhhHHHhhhChHH---HHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000159 203 PVKTILFEKMRDT---MKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279 (2013)
Q Consensus 203 ~l~~~l~~~Lk~~---q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~v 279 (2013)
+-. ...-|+ ..++..+.+++.-++..-+-.+|+-.--+ |.+.-.+ .
T Consensus 171 -~~~---~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~--------------------------~~~~~~p-~ 219 (1176)
T KOG1248|consen 171 -FAP---DAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLR--------------------------DVLSTFP-R 219 (1176)
T ss_pred -CCc---cccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH--------------------------HhhccCC-H
Confidence 100 111222 12344444544322111111111110000 0010001 1
Q ss_pred cccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCC-CCCCChHHHHHHHHHHhcccCHHHHHHH-HHHHHHHHHHh
Q 000159 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKR-IAPGDFTEVCRTLKKLITDVNIAVAVEA-IQAIGNLARGL 356 (2013)
Q Consensus 280 dIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pk-i~~~~~~~l~~~L~k~l~D~N~~V~~~A-~~~l~~La~~L 356 (2013)
..+..+. +.+..-.....--.+.++++.+..+.+ .+. +...-+..++.+|.+.--+.|-.....+ ++++...-..+
T Consensus 220 ~li~sl~-e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~l 298 (1176)
T KOG1248|consen 220 PLIKSLC-EVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDIL 298 (1176)
T ss_pred HHHHHHH-HHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHH
Confidence 1122333 344445566777788899999988773 333 2223345566666555433332222222 22222211111
Q ss_pred ---hhc-chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH-hHHHH-HHHHhhcCChHHHHHHHHHHHHH
Q 000159 357 ---RTH-FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-DVVED-VKTSVKNKVPLVRSLTLNWVTFC 430 (2013)
Q Consensus 357 ---~~~-f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~-~il~~-l~~~l~~Knp~vR~~~l~~L~~~ 430 (2013)
..+ --.....+++.++..+-.....+.+++.+++..+... |+++. .+-.. +...|.-|-..+=..+++.+..+
T Consensus 299 a~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~-sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~ 377 (1176)
T KOG1248|consen 299 ATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKE-SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSAL 377 (1176)
T ss_pred HHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcc-cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 111 1245667788888877788889999999999999987 66622 22222 33455667777778889999998
Q ss_pred HHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCC
Q 000159 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATG 510 (2013)
Q Consensus 431 l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~ 510 (2013)
++.+++-.- +.+-..+..+...=.+.+-.-+..=-+|+|...+.+|.+.+-..++ |+- .....
T Consensus 378 fek~G~~s~-~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lp---------Lnl---~~~s~---- 440 (1176)
T KOG1248|consen 378 FEKCGELSG-PELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILP---------LNL---HAESL---- 440 (1176)
T ss_pred HHHhhhhcC-HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcc---------hhc---ccccc----
Confidence 888875321 2222222223322223333344466778888888888654332221 000 00000
Q ss_pred CCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCC
Q 000159 511 TSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS 590 (2013)
Q Consensus 511 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S 590 (2013)
. .+ + +..=|.- +-. . . ...++
T Consensus 441 ------~------------~~----R------sWLLPvL-----------R~~-----i--------~-------~A~La 461 (1176)
T KOG1248|consen 441 ------S------------FT----R------SWLLPVL-----------RDY-----I--------I-------GASLA 461 (1176)
T ss_pred ------c------------cc----h------hHhHHHH-----------HHh-----h--------c-------cCcHH
Confidence 0 00 0 0000000 000 0 0 00000
Q ss_pred --HHHHHHHhhccCcHHHHhhhcCCCHHHHHH-----HHHHHHH----HHHhccC--cc--hH----HHHHHHHHhcCCC
Q 000159 591 --LEEIESRLGSLIPADTVGQLKSAVWKERLE-----AISSLRQ----QVEAVQN--LD--QS----VEILVRLVCMLPG 651 (2013)
Q Consensus 591 --~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~-----ale~L~~----~v~~~~~--~~--~~----~~~lv~~L~~~pg 651 (2013)
.+.+-. +...|.++.-+...+ -++.|.. .+.++.+ .+ .. ...+...+.+.
T Consensus 462 ~F~~~ivp---------la~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-- 530 (1176)
T KOG1248|consen 462 FFTEYIVP---------LAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-- 530 (1176)
T ss_pred HHHHHHHH---------HHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc--
Confidence 011111 111222111111111 1111111 1111111 11 00 11111121111
Q ss_pred CcccHHHHHHHHHHHHHHHHHHcC---------CCchhhHHHHHHHHHhhhcCh-----h---hhHHHHHHHH-HHHhhh
Q 000159 652 WSEKNVQVQQQVIEVINYLAATAT---------KFPKKCVVLCLLGISERVADI-----K---TRAHAMKCLT-TFSEAV 713 (2013)
Q Consensus 652 l~DsN~qV~~~~Le~l~~l~~~~~---------~~~~~~~~~il~~LveKlgD~-----K---~r~~a~e~L~-~l~e~~ 713 (2013)
.-.....+..|..+++.+. .+..+.+...+|.++..-+.. + .+....+... .+.+..
T Consensus 531 -----~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t 605 (1176)
T KOG1248|consen 531 -----PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVT 605 (1176)
T ss_pred -----hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcc
Confidence 1223345556666666541 122334556677777654432 1 1222222222 233333
Q ss_pred ChhHHHHHHHHHhh----h---CCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHH
Q 000159 714 GPGFIFERLYKIMK----D---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (2013)
Q Consensus 714 ~~~~Vl~~L~~~l~----~---~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~L 786 (2013)
+. -|...+...+. . .+.+......|+.+..+..-... -++..+....... ..++++.|+.-+..+|.++
T Consensus 606 ~~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e--~~vs~l~~v~~~~-e~~~~~~vQkK~yrlL~~l 681 (1176)
T KOG1248|consen 606 PT-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTE--SQVSKLFTVDPEF-ENSSSTKVQKKAYRLLEEL 681 (1176)
T ss_pred cH-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccc--hhHHHHHHhhHHh-hccccHHHHHHHHHHHHHH
Confidence 32 23333333321 1 12233333333333333321111 1233333444444 5566889999999999888
Q ss_pred HHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCC
Q 000159 787 HKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPD 866 (2013)
Q Consensus 787 y~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~ 866 (2013)
... +....+..+....+.+.+-+-|+ +..
T Consensus 682 ~~~--~s~~~~~~q~i~~I~n~L~ds~q-------------------------------------------------s~~ 710 (1176)
T KOG1248|consen 682 SSS--PSGEGLVEQRIDDIFNSLLDSFQ-------------------------------------------------SSS 710 (1176)
T ss_pred hcC--CchhhHHHHHHHHHHHHHHHHHh-------------------------------------------------ccc
Confidence 765 22222222222223333333222 222
Q ss_pred hHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHH--HH---hChhh-HhhhhhHHHH
Q 000159 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA--SA---MGPAV-EKSSKGVLSD 940 (2013)
Q Consensus 867 Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La--~a---lg~~~-~~~~~~llp~ 940 (2013)
--.|...+..|..|+...+.....-....|..++... +|-|..-++.|..+|-.|+ .. .|.+= ...+..+++.
T Consensus 711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~ 789 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI 789 (1176)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 2234555666666665322111111112233333333 8888888888888888887 22 22221 2356667777
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC---CCCh
Q 000159 941 ILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDA 1010 (2013)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~ 1010 (2013)
|...+......++.+-+-++..++...+ +..+++.+.-.|.+. +++++..+++++..++...+. .+..
T Consensus 790 Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~ 867 (1176)
T KOG1248|consen 790 ISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHL 867 (1176)
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence 7777777777777766788887776532 455666777777765 589999999999988887765 3455
Q ss_pred hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhc
Q 000159 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (2013)
Q Consensus 1011 ~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~ 1070 (2013)
..+++.++..+.|....+|.+....|..+.+.+|.+.+..++. .....+...|.+.
T Consensus 868 ~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p----ee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 868 EELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP----EEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH----HHHHHHHHHHHHH
Confidence 5666668888899999999999999999999999999888764 4444555555443
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=98.53 E-value=0.0015 Score=87.86 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=64.0
Q ss_pred HHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000159 372 LEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2013)
Q Consensus 372 L~klkdkk~~-V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2013)
-+.|...+.. .+++....+..+.. | .....++++++..+.+++..+|+-+..++..+....+.. .-..+..+
T Consensus 38 r~~L~s~~~~~kk~alKkvIa~mt~-G-~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-----alLaINtl 110 (746)
T PTZ00429 38 QNDLNGTDSYRKKAAVKRIIANMTM-G-RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-----ALLAVNTF 110 (746)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHC-C-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-----HHHHHHHH
Confidence 3334343333 34444444444433 2 456788999999999999999999988888765533321 23457888
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 000159 451 MECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
.+-+.|++|-||--|.++|+.
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~ 131 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMC 131 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHc
Confidence 999999999999999988854
No 40
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=2.7e-06 Score=98.31 Aligned_cols=180 Identities=17% Similarity=0.248 Sum_probs=147.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
..+..|++++|....+|+..+..+.. .++..-...+++++-++.+-++..+..|...||-+++.|++.++..+.+.+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998876 34444444568888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC----CChhh
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAH 1012 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ 1012 (2013)
++..|+..-.+.|..||+.|..+|++++.++....+++.+..++++. ++..|...+.-.......++.. ....+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999876 5777766554444444433321 12334
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 1013 LLKPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
++..+-.-+.|+-+.+|++|...+...
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhH
Confidence 455566678999999999998666543
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=98.35 E-value=0.00044 Score=92.84 Aligned_cols=358 Identities=12% Similarity=0.120 Sum_probs=228.6
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000159 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (2013)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~ 684 (2013)
++.+.|.+.+-..|.+|+..+...+..+.+.......+++. +.-.|..+...+.-.+..+++. ....+-.
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~------~~S~d~elKKLvYLYL~~ya~~----~pelalL 105 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKL------APSTDLELKKLVYLYVLSTARL----QPEKALL 105 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHH------hCCCCHHHHHHHHHHHHHHccc----ChHHHHH
Confidence 45677788888899999999988876654443333334443 2344666666666555555442 2334556
Q ss_pred HHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHH
Q 000159 685 CLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF 762 (2013)
Q Consensus 685 il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~ 762 (2013)
++..+..-+.| +-+|..|..+|..+....-.++++..+.+.+ .+++|-||..++.++.++....+. .+....+++.
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pe-lv~~~~~~~~ 183 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQ-LFYQQDFKKD 183 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCcc-cccccchHHH
Confidence 67777766666 3578888777776655444455666666665 789999999999999998765442 2333457778
Q ss_pred HHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCC
Q 000159 763 CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (2013)
Q Consensus 763 l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~ 842 (2013)
+.++ +.+.|+.|..+|+.+|.++...-+..+. -..+.+.
T Consensus 184 L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~~l~----l~~~~~~------------------------------------ 222 (746)
T PTZ00429 184 LVEL-LNDNNPVVASNAAAIVCEVNDYGSEKIE----SSNEWVN------------------------------------ 222 (746)
T ss_pred HHHH-hcCCCccHHHHHHHHHHHHHHhCchhhH----HHHHHHH------------------------------------
Confidence 8888 9999999999999999888654332211 0111111
Q ss_pred CCCCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHH
Q 000159 843 DGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (2013)
Q Consensus 843 d~lpr~dIs~~L~~~ll~~l~d-~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~ 921 (2013)
.++..+.+ ..|- +. .+-+++....+ -......+++..+..+|.-+|..|+..|++++-.
T Consensus 223 --------------~Ll~~L~e~~EW~-Qi----~IL~lL~~y~P-~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 223 --------------RLVYHLPECNEWG-QL----YILELLAAQRP-SDKESAETLLTRVLPRMSHQNPAVVMGAIKVVAN 282 (746)
T ss_pred --------------HHHHHhhcCChHH-HH----HHHHHHHhcCC-CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 12222222 1342 11 12222221111 0111235678888888988999999999999888
Q ss_pred HHHHhChhh-HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHH---HhcCCCChhhHHHHHHHH
Q 000159 922 VASAMGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA---LTDAKLGAEGRKDLFDWL 997 (2013)
Q Consensus 922 La~alg~~~-~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~---L~~~k~~p~~R~~~l~~L 997 (2013)
+...+.+.. ......+.++++.. ..+.+.++-.+...|..++.... ..+.+.+-.. ..++ ..+|...+..|
T Consensus 283 l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff~~~~Dp---~yIK~~KLeIL 357 (746)
T PTZ00429 283 LASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFYVRYSDP---PFVKLEKLRLL 357 (746)
T ss_pred hcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhhcccCCc---HHHHHHHHHHH
Confidence 876554332 33444455666655 45778899999999988887653 2233332222 2233 45788888888
Q ss_pred HHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 998 SKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 998 ~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
..... ...+..++.-+.....|.+.++|..+..+++.+...+.
T Consensus 358 ~~Lan----e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 358 LKLVT----PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HHHcC----cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh
Confidence 76543 33567778888888899999999999999998876654
No 42
>PRK09687 putative lyase; Provisional
Probab=98.33 E-value=3.1e-05 Score=93.18 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=117.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~l 941 (2013)
+.|++|.+|..|+..|+.+... ...+ ...++..|...+.|.+..|+..++..++.+. ....++.|
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~---~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L 164 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKK---NPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLL 164 (280)
T ss_pred hcCCCHHHHHHHHHHHhccccc---cccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHH
Confidence 5888999999999999876431 1111 2456777888899999999999988886442 13578999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000159 942 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (2013)
Q Consensus 942 l~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (2013)
+..|.|....||..|..+|+.+ ..+-...++.+...|.+. ++.+|.+++..|.+. .....+++|+..|
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~--------~~~~av~~Li~~L 232 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALR--------KDKRVLSVLIKEL 232 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHcc--------CChhHHHHHHHHH
Confidence 9999999999999999999988 334457888899999877 689999999988752 1256788899999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 000159 1022 TDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 1022 ~D~~~dVR~aA~~~L~~l 1039 (2013)
+|.+ ||..|..+|+.+
T Consensus 233 ~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 233 KKGT--VGDLIIEAAGEL 248 (280)
T ss_pred cCCc--hHHHHHHHHHhc
Confidence 9865 888888777764
No 43
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.017 Score=74.47 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=73.8
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~i-l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2013)
+..++|.+.+....++..|..-+.-=|...... -..+..+ +..+-.+|++.|+-+|..++..|..+ . +.-.
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe-qpdLALLSIntfQk~L~DpN~LiRasALRvlSsI----R---vp~I 140 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE-QPDLALLSINTFQKALKDPNQLIRASALRVLSSI----R---VPMI 140 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-CCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhc----c---hhhH
Confidence 566788888888888888877665555444443 1111111 35566789999999999998887653 1 1223
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.+.++-++.+|..|..+-||..|+-|+..++..
T Consensus 141 aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 141 APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 466777889999999999999999999877654
No 44
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.27 Score=66.24 Aligned_cols=595 Identities=15% Similarity=0.116 Sum_probs=302.8
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc---CCC
Q 000159 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG---CLN 400 (2013)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~ai~~~~---~~~ 400 (2013)
.++..|...+.|....|+..|++-++.++..+... .+..++..+++.|..-. ...--.+.-+|..+...| ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666778999999999999999999988743 45667777777554433 333344445555555442 233
Q ss_pred hHhHHHHHHHHhh--------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHHhcCCCHHHHHHHHHHHHH
Q 000159 401 LVDVVEDVKTSVK--------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 401 l~~il~~l~~~l~--------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
+++|+|.|..++. ..--.||-.++=++-.+.....+..+.+++..+.+.+ ..++-|..-++|.||..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 5688888887773 2335788888777766666666666666666666655 567899999999999999876
Q ss_pred HHHHhCchhH-HHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 000159 472 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (2013)
Q Consensus 472 l~~~~Ge~~~-~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 550 (2013)
.....|+-+. ..++...|-..-.....++.
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~------------------------------------------------- 528 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYL------------------------------------------------- 528 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHH-------------------------------------------------
Confidence 6555554310 11222212110000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 000159 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (2013)
Q Consensus 551 ~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~ 630 (2013)
+ -..+.++.+.....++.+.+..++.|=+-+.|..|...|.++..
T Consensus 529 --------------------------------~---l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 529 --------------------------------D---LCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred --------------------------------H---HhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 0 00011222222334444555666888888899999998887543
Q ss_pred h-ccCcchHHHHHHHHHhcCCCCcccHH--HHHHHHHHHHHHHHH---HcCCCchhhHHH---HHHHHHhhhcChhhhHH
Q 000159 631 A-VQNLDQSVEILVRLVCMLPGWSEKNV--QVQQQVIEVINYLAA---TATKFPKKCVVL---CLLGISERVADIKTRAH 701 (2013)
Q Consensus 631 ~-~~~~~~~~~~lv~~L~~~pgl~DsN~--qV~~~~Le~l~~l~~---~~~~~~~~~~~~---il~~LveKlgD~K~r~~ 701 (2013)
- +.... ...+.++|... --.|-+. -+...+=+++..+-. ....+...-+.. +++.+.++......++.
T Consensus 574 ~~pk~~a--~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~l 650 (1133)
T KOG1943|consen 574 TEPKYLA--DYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTL 650 (1133)
T ss_pred hhHHhhc--ccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHH
Confidence 3 11111 01223333211 0122221 111222222221111 111112222222 46666666555443344
Q ss_pred HHHHHHHHHhhhC-------hhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCC
Q 000159 702 AMKCLTTFSEAVG-------PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQS 770 (2013)
Q Consensus 702 a~e~L~~l~e~~~-------~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~ 770 (2013)
-..+...+.|.++ ++++.+..-..+ ..+.| .+|.++...+++++..|-.... ...+++......+-..
T Consensus 651 mr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~ 729 (1133)
T KOG1943|consen 651 MRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKC 729 (1133)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCc
Confidence 4555555555443 234444322222 12334 6788888888888877643211 1113444333321344
Q ss_pred CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCccc
Q 000159 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (2013)
Q Consensus 771 ~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dI 850 (2013)
.+..+|..-+..++.+-..+ +... .++.+ .+
T Consensus 730 ~~~~~r~g~~lal~~lp~~~---i~~~-------~q~~l----c~----------------------------------- 760 (1133)
T KOG1943|consen 730 SEERIRRGLILALGVLPSEL---IHRH-------LQEKL----CK----------------------------------- 760 (1133)
T ss_pred hHHHHHHHHHHHHccCcHHh---hchH-------HHHHH----HH-----------------------------------
Confidence 46666766555554432111 1110 01111 11
Q ss_pred ccccchHHHHhc-CCCCh-HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--------cchhHHHHHHHHHHHH
Q 000159 851 SGKFTPTLVKSL-ESPDW-KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--------YDSNKNLVMATLITLG 920 (2013)
Q Consensus 851 s~~L~~~ll~~l-~d~~W-k~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL--------~DsN~~V~~~Al~~l~ 920 (2013)
.++... +|. | ..|..++.++..++..-.....+..+.+++..|.+.| +|--.-|+.+|+..+.
T Consensus 761 ------~~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~ 833 (1133)
T KOG1943|consen 761 ------LVLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALS 833 (1133)
T ss_pred ------HHhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHH
Confidence 111111 122 5 3477777777776653222233334455555555554 3445668899999988
Q ss_pred HHHHHhC-h-hhHh-hhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHH---HHHHHh-cCCCChhhHHHH
Q 000159 921 AVASAMG-P-AVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY---VTTALT-DAKLGAEGRKDL 993 (2013)
Q Consensus 921 ~La~alg-~-~~~~-~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~---l~~~L~-~~k~~p~~R~~~ 993 (2013)
.+..-+. + -++. .+..++..+++...|+-...|+.|..|+..++.+-.--..++. +.+.+. +...++..=...
T Consensus 834 ~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~ 913 (1133)
T KOG1943|consen 834 SLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPT 913 (1133)
T ss_pred hhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccch
Confidence 8876653 3 3444 3556677788888888888899999999998877111112222 222221 000001000011
Q ss_pred HHHHHHHhccCCCCCCh-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcC
Q 000159 994 FDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (2013)
Q Consensus 994 l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~ 1071 (2013)
...+.-.+. ..+.. .+.+..+...+..-....++.|.+++..+++ +...+.+-.+..+..-...+.+.+-..+
T Consensus 914 ~f~L~~~Ll---~~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~dp~t~~~~~stl~~~~~~~l~~er 987 (1133)
T KOG1943|consen 914 LFPLNSSLL---ELPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENSDPKTIGSRDSTLLQLIEEALLNER 987 (1133)
T ss_pred hhhHHHHHH---hhHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--HhhcCcccccchHHHHHHHHHHHHHHHH
Confidence 111111111 01122 2333334444544455667777777777777 5444444445555555555665554433
No 45
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.53 Score=63.62 Aligned_cols=498 Identities=17% Similarity=0.143 Sum_probs=264.6
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh---HhHHHHHHHHhh----cCChHHHHHHHHHHHHHHHhc
Q 000159 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVK----NKVPLVRSLTLNWVTFCIETS 434 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l---~~il~~l~~~l~----~Knp~vR~~~l~~L~~~l~~~ 434 (2013)
-+++.++-.|+..+.|+...||=++.+.+..+... .+. ++++..++..+. +..|- +++.+|+.+...
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r--lp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r- 410 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR--LPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR- 410 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc--CcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc-
Confidence 46778999999999999999999999999998876 332 334454544332 33343 666666654322
Q ss_pred ChhHHHHhhhhHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCC
Q 000159 435 SKAAVLKVHKDYVPICMECLN--------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD 506 (2013)
Q Consensus 435 ~~~~l~~~l~~l~p~l~k~l~--------Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~ 506 (2013)
+ =.+...+..++|.+.+++. -.-..|||+|+=.+|+|.+......+.|++..|-..
T Consensus 411 G-lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~--------------- 474 (1133)
T KOG1943|consen 411 G-LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASA--------------- 474 (1133)
T ss_pred C-CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHH---------------
Confidence 1 0122346889999999883 223579999999999999988876666666544321
Q ss_pred CCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCC
Q 000159 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (2013)
Q Consensus 507 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~ 586 (2013)
T Consensus 475 -------------------------------------------------------------------------------- 474 (1133)
T KOG1943|consen 475 -------------------------------------------------------------------------------- 474 (1133)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc--chHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 000159 587 SEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVI 664 (2013)
Q Consensus 587 ~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~~~~~~lv~~L~~~pgl~DsN~qV~~~~L 664 (2013)
-++..+++..-.-|.+|--.|++.+...++. +...-..+.+++. .-++...
T Consensus 475 ------------------LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV---------~~rsNcy 527 (1133)
T KOG1943|consen 475 ------------------LLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSV---------TNRSNCY 527 (1133)
T ss_pred ------------------HHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhh---------hhhhhHH
Confidence 1123344444445555555555555432221 0011112233321 1123333
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHhh-hc--ChhhhHHHHHHHHHHHhhh---ChhHHHHHHHHHhhhCCChhHHHHH
Q 000159 665 EVINYLAATATKFPKKCVVLCLLGISER-VA--DIKTRAHAMKCLTTFSEAV---GPGFIFERLYKIMKDHKNPKVLSEG 738 (2013)
Q Consensus 665 e~l~~l~~~~~~~~~~~~~~il~~LveK-lg--D~K~r~~a~e~L~~l~e~~---~~~~Vl~~L~~~l~~~KnpKv~~~~ 738 (2013)
..+...+..++.+ ...++..++.+ +- |.++|..+..+|..+.... ..++++..+++.. ..+++-.|.++
T Consensus 528 ~~l~~~ia~~~~y----~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~-ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 528 LDLCVSIAEFSGY----REPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST-LSKDASMRHGV 602 (1133)
T ss_pred HHHhHHHHhhhhH----HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh-cCCChHHhhhh
Confidence 3333333333333 33445555543 44 4788999999999977653 2345666676663 57888889988
Q ss_pred HHHHHHHHHHhC-CCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhCh-hHHhhhhhccHHHHHHHHHHHhhC
Q 000159 739 ILWMVSAVEDFG-VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEKN 816 (2013)
Q Consensus 739 l~~L~~li~~fG-~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~-~l~~~L~~lkp~ll~~Le~ef~k~ 816 (2013)
....++++..+- .. +++..+... .-+-+..-+..+...+.+-|. ++. .-...+.|+.-+..
T Consensus 603 ~la~~ev~~~~~~l~-----~~~~~l~e~-----~i~~l~~ii~~~~~~~~~rg~~~lm------r~~~~~~Ie~~s~s- 665 (1133)
T KOG1943|consen 603 FLAAGEVIGALRKLE-----PVIKGLDEN-----RIAGLLSIIPPICDRYFYRGQGTLM------RQATLKFIEQLSLS- 665 (1133)
T ss_pred HHHHHHHHHHhhhhh-----hhhhhhHHH-----HhhhhhhhccHHHHHHhccchHHHH------HHHHHHHHHHhhhc-
Confidence 888888875431 11 111100000 000000011112222222221 111 11122222221100
Q ss_pred CCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hh-
Q 000159 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TG- 894 (2013)
Q Consensus 817 ~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~- 894 (2013)
.. | ..+...+. ..-.-+.+.+.+.| .+|.+++.++.+++.. ....+. ..
T Consensus 666 ---~~----~-----------------~~~~~v~e-~~~~ll~~~l~~~n-~i~~~av~av~~l~s~---y~~~d~~~~~ 716 (1133)
T KOG1943|consen 666 ---KD----R-----------------LFQDFVIE-NWQMLLAQNLTLPN-QIRDAAVSAVSDLVST---YVKADEGEEA 716 (1133)
T ss_pred ---cc----h-----------------hHHHHHHH-HHHHHHHHhhcchH-HHHHHHHHHHHHHHHH---HHhcCchhhh
Confidence 00 0 00000000 00001112335567 8999999999999873 333322 12
Q ss_pred hHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHh-ChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcC---
Q 000159 895 ELFGGLRGRL-YDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVH--- 968 (2013)
Q Consensus 895 eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~al-g~~~~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~g--- 968 (2013)
+++.....++ +.++..+++.-.-+++.+-.-+ ... +-+.+...++..+- |--+.-|+..+.+++.++...+
T Consensus 717 ~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~---~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~ 793 (1133)
T KOG1943|consen 717 PLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRH---LQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLL 793 (1133)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchH---HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 3544444444 5557777765544444433211 111 12233444444443 3367788888889888887765
Q ss_pred ----chhhHHHHHHHHhc------CCCChhhHHHHHHHHHHHhccCCCCCC-hhhhHHHHHhh----cCCCChHHHHHHH
Q 000159 969 ----LDKMVPYVTTALTD------AKLGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASIA----MTDKSSDVRKAAE 1033 (2013)
Q Consensus 969 ----l~~ll~~l~~~L~~------~k~~p~~R~~~l~~L~~~l~~~~~~~~-~~~ll~pl~~~----L~D~~~dVR~aA~ 1033 (2013)
..++++.+..+|.+ +.+...+|..++..+.........++- ..+.+.+++.+ --|+-...|.-|.
T Consensus 794 ~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~ 873 (1133)
T KOG1943|consen 794 FSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAA 873 (1133)
T ss_pred ccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46677777777763 112355777777777766555543221 23444444443 3566666688888
Q ss_pred HHHHHHHHH
Q 000159 1034 ACIVEILRA 1042 (2013)
Q Consensus 1034 ~~L~~l~~~ 1042 (2013)
.|+..+..+
T Consensus 874 ~~~~qi~~~ 882 (1133)
T KOG1943|consen 874 SALNQIVVH 882 (1133)
T ss_pred HHHhceeec
Confidence 887777666
No 46
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.61 E-value=0.0033 Score=83.76 Aligned_cols=301 Identities=15% Similarity=0.214 Sum_probs=196.8
Q ss_pred HHHHhhhcC-CCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh--
Q 000159 604 ADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK-- 680 (2013)
Q Consensus 604 ~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~-- 680 (2013)
.-+..++++ +.-..|++|++-|...-.-.+. +...+-++.|+.. -|.|+..+|+..++++|..++..-.++.+.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d-e~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD-EVKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch-HHHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 344445544 3456788999888765443222 1235556666644 379999999999999999988765555432
Q ss_pred --hHHHHHHHHHhhhcCh---hhhHHHHHHHHHHHhhhChhHHHHHHHH--HhhhCCChh----HH-HHHHHHHHHHHHH
Q 000159 681 --CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYK--IMKDHKNPK----VL-SEGILWMVSAVED 748 (2013)
Q Consensus 681 --~~~~il~~LveKlgD~---K~r~~a~e~L~~l~e~~~~~~Vl~~L~~--~l~~~KnpK----v~-~~~l~~L~~li~~ 748 (2013)
....++|.|-.-+.|. .+|-.-..+|-.+|+...-=..+.+.+. ++.+..|.. -. ..-+..|.
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~----- 576 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH----- 576 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-----
Confidence 3456777777766662 4676666677776653211011111111 111111111 00 00011111
Q ss_pred hCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccc
Q 000159 749 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (2013)
Q Consensus 749 fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~ 828 (2013)
..+-+.+..+ +.++.+.||.+-.+.++.|+.++|.. +
T Consensus 577 --------~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k----------- 613 (1431)
T KOG1240|consen 577 --------HTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K----------- 613 (1431)
T ss_pred --------HHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c-----------
Confidence 1233344566 88888999999999999999988832 0
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh-HHHHHHhcccch
Q 000159 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDS 907 (2013)
Q Consensus 829 r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~e-L~~~L~~rL~Ds 907 (2013)
+ + |+ |.+.|+.-|.|++|.-|-.-.+.+-++. -.+.+....| |++.|.+.|.|.
T Consensus 614 -s-----------N------D~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 614 -S-----------N------DV---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred -c-----------c------cc---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCc
Confidence 0 1 11 5678888899999999999888777654 3455442344 567778889999
Q ss_pred hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHh
Q 000159 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALT 981 (2013)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~ 981 (2013)
..-|+..||.++..|++. |--=++++..++..++-.|...+..||.++...+-++.++++- -.++|.|-++|.
T Consensus 669 EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred chhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999999999999988864 2223467888888888899999999999999999999988862 345666666665
No 47
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.54 E-value=0.0048 Score=75.46 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=140.2
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcC---CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh--hcchhh
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAST---KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~---pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~--~~f~~~ 363 (2013)
++.+.+.+++=+.|.++|..+..++.. +.+....+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 566778889999999999999887632 222335678999999999985545667889999999999887 444566
Q ss_pred hHhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcCCChHh------HHHHHHHHh--h----------cCChHHHHHH
Q 000159 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSV--K----------NKVPLVRSLT 423 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~--~V~~aa~~aL~ai~~~~~~~l~~------il~~l~~~l--~----------~Knp~vR~~~ 423 (2013)
...+.|.|..-+.|... .+|.++..||..+.-.++...+. +++.|+... + ..++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 77888888888887643 46667766776544332333332 344333221 1 1236788888
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
+.--+.++...+...+...+...+|.+..+|+..+.+||-+|-++++.++....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8877888877777666677888999999999999999999999999999988764
No 48
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.46 E-value=0.31 Score=64.19 Aligned_cols=396 Identities=14% Similarity=0.162 Sum_probs=231.5
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhc
Q 000159 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (2013)
Q Consensus 722 L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 801 (2013)
++..+ ...+......++..|..++..+....+ ...+.+++.. ||.|+++.||.-+.+.++.+-...+..+.
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~------ 113 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAAQ------ 113 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHHH------
Confidence 44443 344666777788888888876654433 4567788887 49999999999998886544322110000
Q ss_pred cHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHH
Q 000159 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (2013)
Q Consensus 802 kp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il 881 (2013)
-+ .. ..+.+.++..+.|.+-.+-+.|+..|..+.
T Consensus 114 -------------~~-----------------------------~~----~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 114 -------------LL-----------------------------VD----NELLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred -------------Hh-----------------------------cC----ccHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 00 00 113456778889999999999999999887
Q ss_pred HhccccCCCCCh-hhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHH
Q 000159 882 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLT 958 (2013)
Q Consensus 882 ~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~aa~~ 958 (2013)
... ..+. ..| .++...|...+...|..++..+++++..++..- .....++.. +++.+++.|.+..-.++-.+.+
T Consensus 148 ~~~-~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 1110 011 233777777777767788888888887776443 333344444 9999999999988899999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCCCChhhH-HHHHHHHHHHhccCCC--CCC----hhhhHHHHHhhcCCCC
Q 000159 959 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGLSG--FPD----AAHLLKPASIAMTDKS 1025 (2013)
Q Consensus 959 aL~~i~~~~g-l-----~~ll~~l~~~L~~~k~~p~~R-~~~l~~L~~~l~~~~~--~~~----~~~ll~pl~~~L~D~~ 1025 (2013)
.|..++..-. . ..+++.|...+.+.+.+|..+ .-+.+.+ +.+..+.. ... ...++..+..+++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999998432 1 235666777776544345112 2222222 22222211 112 2334444666778999
Q ss_pred hHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000159 1026 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1104 (2013)
Q Consensus 1026 ~dVR~aA~~~L~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 1104 (2013)
...|..|..+++.+.... |...+ ..+-.+.-+..+..+-...+.. +
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~-----~------------------------- 350 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSG-----S------------------------- 350 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCC-----c-------------------------
Confidence 999999999999775433 22222 1112222222222221111100 0
Q ss_pred cCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHHHhh-hhhcc-c-cc-cCCChhHHHHHHHHHHhhhhH---H-HH
Q 000159 1105 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F-KF-EDPRIEQIQELENDMMKYFRE---D-LH 1176 (2013)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~-~~~~k-~-~f-~~p~~e~ve~L~~q~~~~~~~---~-l~ 1176 (2013)
-+-|.+ +..+. + .+ .+...+++-.+...+...++. . ++
T Consensus 351 ----------------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 351 ----------------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred ----------------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 000000 00000 0 00 011223332333333333322 1 44
Q ss_pred HhhcccCHHH-HHHHHHHHHHhcccCh-hhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHH
Q 000159 1177 RRLLSTDFKK-QVDGLEMLQKALPSIR-KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (2013)
Q Consensus 1177 ~~lfs~D~k~-~~~al~~L~~~l~~~~-~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~ 1243 (2013)
-.+...+|-+ |++|+..|...+.+.- ...+.+.-=++.|++-|-.|++..+...-.+++..+.....
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 4455678765 8999999988877642 22344455589999999999999999999999998765544
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.32 E-value=0.22 Score=65.55 Aligned_cols=185 Identities=20% Similarity=0.265 Sum_probs=111.4
Q ss_pred hhhhccCCHHHHHHHHHHHHHHhcCCC----CC-CCChHHHHHHHHHHhccc--CHHHHHHHHHHHHHHHHHhhhcchhh
Q 000159 291 WEGVKATKWSERKDAVAELTKLASTKR----IA-PGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSGS 363 (2013)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~pk----i~-~~~~~~l~~~L~k~l~D~--N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2013)
...+.+.+--.|..+++.|..++..+. +. .+-+..|+..|...-.|. +....-..++..+.++..-...+-..
T Consensus 208 l~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~ 287 (503)
T PF10508_consen 208 LKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL 287 (503)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH
Confidence 334455555667777887777764221 11 122334444444433344 44444555677777776522333333
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cC--------CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~--~~--------~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~ 433 (2013)
...++..++..+....+..+..|.+|+..+..+ |. ..+..++..+.....+....+|..+++.++.++..
T Consensus 288 ~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 288 YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 455666667777778888999999999888644 10 01122334444444556678999999999999765
Q ss_pred cCh---hHHHHhh---------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 434 SSK---AAVLKVH---------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 434 ~~~---~~l~~~l---------~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
... ..+.... +.....+...+.-+.|++|-+|...+.+++.+
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 432 1111111 11112788889999999999999999988855
No 50
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.053 Score=68.91 Aligned_cols=250 Identities=14% Similarity=0.143 Sum_probs=128.9
Q ss_pred hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHH
Q 000159 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (2013)
Q Consensus 716 ~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (2013)
+.++..+... .....++||..+++.|-.+-+ |++ +. +.+-....+. +.|.+..||.+|++++............
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k-L~-~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK-LS-KACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc-cc-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3455544444 467889999999999877766 332 11 3455666777 9999999999999998766544421111
Q ss_pred hhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC-------ChH
Q 000159 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-------DWK 868 (2013)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~-------~Wk 868 (2013)
.+-+ -.+..++-|.++-..-... .=.+|....+ .+ ....++..+++.+.-|+ -|+
T Consensus 271 ~e~~-----e~kl~D~aF~~vC~~v~D~-sl~VRV~AaK---------~l---G~~~~vSee~i~QTLdKKlms~lRRkr 332 (823)
T KOG2259|consen 271 RESE-----EEKLKDAAFSSVCRAVRDR-SLSVRVEAAK---------AL---GEFEQVSEEIIQQTLDKKLMSRLRRKR 332 (823)
T ss_pred chhh-----hhhhHHHHHHHHHHHHhcC-ceeeeehHHH---------Hh---chHHHhHHHHHHHHHHHHHhhhhhhhh
Confidence 1111 1223344444331100000 0001111100 00 00111122222221111 233
Q ss_pred HHHHHHHHHHHHHHhc----cccCC---CC---C-------hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhH
Q 000159 869 VRLESIEAVNKILEEA----NKRIQ---PA---G-------TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931 (2013)
Q Consensus 869 ~R~eale~l~~il~~a----~~~I~---~~---~-------~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~ 931 (2013)
.-.+.-..+ .... +++.. |+ + -+.-..+|..-|.|.=--|+..|...+..||..- +.
T Consensus 333 ~ahkrpk~l---~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~-- 406 (823)
T KOG2259|consen 333 TAHKRPKAL---YSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PG-- 406 (823)
T ss_pred hcccchHHH---HhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CC--
Confidence 222221111 1110 01110 00 0 0112356666667777777777777777776432 22
Q ss_pred hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000159 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-DKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl-~~ll~~l~~~L~~~k~~p~~R~~~l~~L~ 998 (2013)
|....+--++..|+|--..||--|+.+|..+..++.+ +..++.+...|.+. ++++|.++.+.|.
T Consensus 407 -FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 407 -FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLK 471 (823)
T ss_pred -cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 3345556667777777777888888888877777665 44667777777765 4677777766664
No 51
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.15 E-value=0.018 Score=77.21 Aligned_cols=288 Identities=15% Similarity=0.090 Sum_probs=185.7
Q ss_pred HHHHHHHhhhcCh---hhhHHHHHHHHHHHhhhChhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHH---hCCCC-
Q 000159 684 LCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVED---FGVSH- 753 (2013)
Q Consensus 684 ~il~~LveKlgD~---K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~---fG~~~- 753 (2013)
.+++.+...+-.. -.|-.|.+.|..++...+-+..+++++++. +.+..++||..++..|++++.- +....
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 3344444444333 356778888888887776655555555543 4677899999999999999863 22222
Q ss_pred -CChhhHHHHHHhcCCCC-CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCC---CCCCCCcccc
Q 000159 754 -LKLKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTV 828 (2013)
Q Consensus 754 -l~~k~li~~l~~~gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~---~~~p~p~R~~ 828 (2013)
+-+..+++.+..+ +.+ ++..||-+-..++..|.... ..|++ .-|+.... ..+-.-+.+
T Consensus 502 niF~eYlfP~L~~l-~~d~~~~~vRiayAsnla~LA~tA----~rFle-----------~~q~~~~~g~~n~~nset~~- 564 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHL-LNDSSAQIVRIAYASNLAQLAKTA----YRFLE-----------LTQELRQAGMLNDPNSETAP- 564 (1431)
T ss_pred hhhHhhhhhhhHhh-hccCccceehhhHHhhHHHHHHHH----HHHHH-----------HHHHHHhcccccCccccccc-
Confidence 2245677788877 777 66779999999988876432 22221 11110000 000000000
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchh
Q 000159 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908 (2013)
Q Consensus 829 r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN 908 (2013)
.+ ...-...++...+-..+...+.|..--+|..-|+.|..++. .-.+.+.+ .=|+.-|..-|+|..
T Consensus 565 -~~----------~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~-FFGk~ksN--D~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 565 -EQ----------NYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV-FFGKEKSN--DVILSHLITFLNDKD 630 (1431)
T ss_pred -cc----------ccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-Hhhhcccc--cchHHHHHHHhcCcc
Confidence 00 00000111111122334456788888888888888777764 11233333 346788888899999
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHHhcC
Q 000159 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-----DKMVPYVTTALTDA 983 (2013)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl-----~~ll~~l~~~L~~~ 983 (2013)
++++..-.+-|..++--+|.. ...+.++|.+...|.|..+.|...|..|+..+++.--+ -.++..+.+.|.++
T Consensus 631 w~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP 708 (1431)
T ss_pred HHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc
Confidence 999998888877777666755 22346889999999999999999999999999987543 45666777888888
Q ss_pred CCChhhHHHHHHHHHHHhccCCC
Q 000159 984 KLGAEGRKDLFDWLSKQLTGLSG 1006 (2013)
Q Consensus 984 k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2013)
|.-+|..++.++......+..
T Consensus 709 --N~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 709 --NLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred --hHHHHHHHHHHHHHHHhhhhh
Confidence 578999999999887776654
No 52
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.15 E-value=0.0018 Score=65.06 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCC
Q 000159 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 948 (2013)
Q Consensus 869 ~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~ 948 (2013)
.|+.||-.|..+.......+... +.+|++.+...+.|.++.|+..||+.+..|++..+..+-+|...++..+.+.+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48888888888876433444433 58899999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 000159 949 KKHMRECTLTVLDAW 963 (2013)
Q Consensus 949 k~~Vr~aa~~aL~~i 963 (2013)
++.||.+| ..|+.+
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999998 444443
No 53
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=1.9 Score=56.83 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhhcchhhhHhH-HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHH
Q 000159 347 QAIGNLARGLRTHFSGSSRFL-LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLN 425 (2013)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~~l-lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~ 425 (2013)
+=+|+||-.|-=+=.+-+..+ ...|-+-|...++.|+-.|..++..++.. --..++.|++..-++|.+|-+|.-++.
T Consensus 87 KRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~L 164 (866)
T KOG1062|consen 87 KRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAAL 164 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHH
Confidence 446677765543323334443 34444557778888887777777776542 234678899999999999999999998
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHH
Q 000159 426 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (2013)
Q Consensus 426 ~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~ 499 (2013)
...+++.+.+. .+..+++...+.|.|.+..|=-++...+..+++.-.+ .+ .+..++-+.--+-+++.
T Consensus 165 ca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l-~~fr~l~~~lV~iLk~l 231 (866)
T KOG1062|consen 165 CAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-AL-SYFRDLVPSLVKILKQL 231 (866)
T ss_pred HHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HH-HHHHHHHHHHHHHHHHH
Confidence 88888876543 3478899999999999999988888888888776443 22 23333444433444444
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.03 E-value=0.0025 Score=64.02 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000159 301 ERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2013)
Q Consensus 301 eR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2013)
.|+.+|..|.+++ .-++-....+.+|++.+.+.++|.+..|+..||+++..+++..+..+-+|...++..|.+.+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5899999998865 222223334578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000159 380 PTVAESLTQTLQAMH 394 (2013)
Q Consensus 380 ~~V~~aa~~aL~ai~ 394 (2013)
+.|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999988 5566554
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.2 Score=65.18 Aligned_cols=375 Identities=14% Similarity=0.161 Sum_probs=195.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2013)
.++.+.|.|++=..+++||..+..++....+.......+|+-. .-.|..|...+.-.|..+++..+++. -
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNV------askn~EVKkLVyvYLlrYAEeqpdLA----L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNV------ASKNIEVKKLVYVYLLRYAEEQPDLA----L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh------hccCHHHHHHHHHHHHHHhhcCCCce----e
Confidence 4667788899999999999999998877655433444444433 34577777777666666777655531 1
Q ss_pred HHHHHHHhhhcChh--hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHH
Q 000159 684 LCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (2013)
Q Consensus 684 ~il~~LveKlgD~K--~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~ 761 (2013)
.-|..+-.-|+|+. +|..|..+|..|--..-...++-.+-+. ..+.+|.||..+..+|.++.. .+.+ +-..+++
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~-~~D~s~yVRk~AA~AIpKLYs-Ld~e--~k~qL~e 183 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKA-VTDPSPYVRKTAAHAIPKLYS-LDPE--QKDQLEE 183 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHH-hcCCcHHHHHHHHHhhHHHhc-CChh--hHHHHHH
Confidence 11233334466653 5766666665543222122233333232 356778888877777766543 1211 1235777
Q ss_pred HHHhcCCCCCcHhHHHHHHHHHHHHHH----hhChhHH---hhhhhccH---H-HHHHHHHHHhhCCCCCCCCCcccccC
Q 000159 762 FCKDTGLQSSAAATRNATIKLLGALHK----FVGPDIK---GFLADVKP---A-LLSALDAEYEKNPFEGTVVPKKTVRA 830 (2013)
Q Consensus 762 ~l~~~gL~~~n~~VR~aA~~ll~~Ly~----~~G~~l~---~~L~~lkp---~-ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2013)
.++++ |.|.++-|-.+|..++-++|- .++...+ .+|.++.. . ++..|. .+.+... +.|+.
T Consensus 184 ~I~~L-LaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~-RYAR~~l---~~P~~---- 254 (968)
T KOG1060|consen 184 VIKKL-LADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLT-RYARHQL---PDPTV---- 254 (968)
T ss_pred HHHHH-hcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHH-HHHHhcC---CCccc----
Confidence 77777 888888887777777766651 1222111 11111110 0 111111 1111111 00000
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHH
Q 000159 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (2013)
Q Consensus 831 ~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~ 910 (2013)
. ++.+. ..-.|-+-+.... . ++ .+.....+...|++..+..|.-.|..
T Consensus 255 ---~-------~~~~e-------------~n~~~~~~~~~~~---~----~~--~P~~~d~D~~lLL~stkpLl~S~n~s 302 (968)
T KOG1060|consen 255 ---V-------DSSLE-------------DNGRSCNLKDKYN---E----IR--TPYVNDPDLKLLLQSTKPLLQSRNPS 302 (968)
T ss_pred ---c-------ccccc-------------cCccccccccccc---c----cC--CCcccCccHHHHHHhccHHHhcCCcH
Confidence 0 00000 0000000000000 0 00 01111223466788888899999999
Q ss_pred HHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhH
Q 000159 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGR 990 (2013)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R 990 (2013)
|+..+++++=.+|... -+..|+-+++..|..+ ..++.....++..+..... .-|.|.+-...--.+...+++
T Consensus 303 VVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-~lF~P~lKsFfv~ssDp~~vk 374 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-TLFEPHLKSFFVRSSDPTQVK 374 (968)
T ss_pred HHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch-hhhhhhhhceEeecCCHHHHH
Confidence 9999998888877543 2334556666655544 3466666677777665543 223333333322111112333
Q ss_pred HHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000159 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~ 1045 (2013)
.-=+..|...+. ...+..+++-+..-+.+.+-++-.+|.++++.....+|.
T Consensus 375 ~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 375 ILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred HHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence 333333333222 335566777777777666667888888888877776664
No 56
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.062 Score=68.36 Aligned_cols=330 Identities=15% Similarity=0.128 Sum_probs=206.7
Q ss_pred cchHHHHhcC-CCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhh
Q 000159 854 FTPTLVKSLE-SPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (2013)
Q Consensus 854 L~~~ll~~l~-d~~Wk~R~eale~l~~il~~a~--~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~ 930 (2013)
+.+.|...+. +.+-+.|.||.-.|..|..+.. .+.-.. ...++.|...+...+..|..+|.-.++.|| +=++.+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~--agavp~fi~Ll~s~~~~v~eQavWALgNIa-gds~~~ 186 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD--AGAVPIFIQLLSSPSADVREQAVWALGNIA-GDSPDC 186 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc--CCchHHHHHHhcCCcHHHHHHHHHHHhccc-cCChHH
Confidence 4566777775 6668889999999999986321 111111 456777899999999999999999999988 345777
Q ss_pred Hhhhhh--HHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000159 931 EKSSKG--VLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 931 ~~~~~~--llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2013)
..|+.. .+++++..+..+.+ .+...+.=+|..+++.-. +..++|.+...|.+. ++++..+++-.+ .+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAl-sy 263 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWAL-SY 263 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHH-HH
Confidence 777654 77899998888776 444555578888887753 355677777777655 477777766444 45
Q ss_pred hccCCCC-C--Ch-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCC
Q 000159 1001 LTGLSGF-P--DA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 1076 (2013)
Q Consensus 1001 l~~~~~~-~--~~-~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~ 1076 (2013)
+...+.. - .+ ...++-++.+|......|+-.|-.+++.+ ..|.+.....+ ++...+..+..++.+..
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI--vtG~d~QTq~v--i~~~~L~~l~~ll~~s~----- 334 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI--VTGSDEQTQVV--INSGALPVLSNLLSSSP----- 334 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce--eeccHHHHHHH--HhcChHHHHHHHhccCc-----
Confidence 5543321 1 11 22344488899999988987777776663 34444333222 11112222222111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCC
Q 000159 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPR 1156 (2013)
Q Consensus 1077 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~ 1156 (2013)
++ -+| +.-=|....-.
T Consensus 335 --------------------------------------------------------------~~-~ik-kEAcW~iSNIt 350 (514)
T KOG0166|consen 335 --------------------------------------------------------------KE-SIK-KEACWTISNIT 350 (514)
T ss_pred --------------------------------------------------------------ch-hHH-HHHHHHHHHhh
Confidence 00 000 00113322211
Q ss_pred hhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHH--HHHHHHHHHHhhcCcchHHHHHHHhh
Q 000159 1157 IEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNTTCLLKVLEF 1234 (2013)
Q Consensus 1157 ~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~--lDlllk~~~lr~~dtN~~vl~k~Le~ 1234 (2013)
....++.+.-|..-+=+.|+..|-+.||+-|.+|.=.+.....+...+.+.. -.-+++-|+..|.-.+++++..+||.
T Consensus 351 AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 351 AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 2223444555666677889999999999999999999998887766554432 22367777777777899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcC
Q 000159 1235 LPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (2013)
Q Consensus 1235 l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd 1267 (2013)
|..++..-.... .+.. .-+.-+++..|-
T Consensus 431 l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 431 LENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 998777654432 1100 344556666554
No 57
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.87 E-value=0.39 Score=61.81 Aligned_cols=191 Identities=18% Similarity=0.232 Sum_probs=138.0
Q ss_pred HHHHh-cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHhChhhHhhh
Q 000159 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2013)
Q Consensus 857 ~ll~~-l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (2013)
.++.. ....++-.|..+++.+..+++ |......+.+++..+...+ .......+..+++++..+++|+=-.-.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvN---K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVN---KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44443 344458999999999998874 4333334567777777666 566777888999999999999755556778
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCCCChhhHHHHHH
Q 000159 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFD 995 (2013)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~--------g-----------l~~ll~~l~~~L~~~k~~p~~R~~~l~ 995 (2013)
..++..+++.|.| +.+...+..++.-++.-. + +..++|.+.+...+. +...|...+.
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ 345 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHH
Confidence 8899999999999 667778888888777551 1 233445555555433 2346777777
Q ss_pred HHHHHhccCCCC---CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000159 996 WLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (2013)
Q Consensus 996 ~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L 1055 (2013)
.|.-.+.+.+.. +++..+++-++.+|.=.+.+||.++-.+|..++..- .+.+.++++.|
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 888788877763 566777777999998889999999999999888877 56677766544
No 58
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.4 Score=61.92 Aligned_cols=258 Identities=11% Similarity=0.147 Sum_probs=144.9
Q ss_pred HHHhCCCCcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCc
Q 000159 156 LSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235 (2013)
Q Consensus 156 l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R 235 (2013)
|..|++.-+ .+.+-.-+..+|+|+-+-||..|+.++--+|-.-.+ ++++.+ ..|+ ++++. +-|.
T Consensus 133 LS~fvTpdL-ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~~F-prL~-----------EkLeD-pDp~- 196 (877)
T KOG1059|consen 133 LSCIVTPDL-ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRPCF-PRLV-----------EKLED-PDPS- 196 (877)
T ss_pred cccccCchh-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhhhH-HHHH-----------HhccC-CCch-
Confidence 456777422 267888888999999999999998888777766655 465543 3322 12221 1110
Q ss_pred cchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh--ccCCHHHHHHHHHHHHHHh
Q 000159 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV--KATKWSERKDAVAELTKLA 313 (2013)
Q Consensus 236 ~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l--~s~kWkeR~eaL~~L~~l~ 313 (2013)
+-+....-- +. -+- =+| .+-+. |. +.||+.+ .+.+|---+ -++-+.+|.
T Consensus 197 -V~SAAV~VI----------CE----LAr-----KnP------knyL~-LA-P~ffkllttSsNNWmLIK-iiKLF~aLt 247 (877)
T KOG1059|consen 197 -VVSAAVSVI----------CE----LAR-----KNP------QNYLQ-LA-PLFYKLLVTSSNNWVLIK-LLKLFAALT 247 (877)
T ss_pred -HHHHHHHHH----------HH----HHh-----hCC------ccccc-cc-HHHHHHHhccCCCeehHH-HHHHHhhcc
Confidence 001100000 00 000 011 11111 22 4788877 558995321 222223333
Q ss_pred c-CCCCCCCChHHHHHHHHHHhcccC-HHHHHHHHHHHHHHHHH-----hhhcchhhhHhHHHHHHHHhccCcHHHHHHH
Q 000159 314 S-TKRIAPGDFTEVCRTLKKLITDVN-IAVAVEAIQAIGNLARG-----LRTHFSGSSRFLLPVLLEKLKEKKPTVAESL 386 (2013)
Q Consensus 314 ~-~pki~~~~~~~l~~~L~k~l~D~N-~~V~~~A~~~l~~La~~-----L~~~f~~~~~~llp~LL~klkdkk~~V~~aa 386 (2013)
- .|++-. .|+.-|...+.... -.+.. .|+..+..+ +..+ ...+..++.-|=.-+-|+.++..=-+
T Consensus 248 plEPRLgK----KLieplt~li~sT~AmSLlY---ECvNTVVa~s~s~g~~d~-~asiqLCvqKLr~fiedsDqNLKYlg 319 (877)
T KOG1059|consen 248 PLEPRLGK----KLIEPITELMESTVAMSLLY---ECVNTVVAVSMSSGMSDH-SASIQLCVQKLRIFIEDSDQNLKYLG 319 (877)
T ss_pred ccCchhhh----hhhhHHHHHHHhhHHHHHHH---HHHHHheeehhccCCCCc-HHHHHHHHHHHhhhhhcCCccHHHHH
Confidence 1 343322 23333444443221 11333 334333332 3232 34566777777777788999998888
Q ss_pred HHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCH-HHHHHH
Q 000159 387 TQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP-EVRDAA 465 (2013)
Q Consensus 387 ~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~-~VR~aA 465 (2013)
.-|+.-+.......+....+.|+.+|.++.+.+|..++..|..++.. +.+.+|+..|+..+.+++. .-|+.-
T Consensus 320 Llam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-------kNl~eIVk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 320 LLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-------KNLMEIVKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred HHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhccchhHHHHH
Confidence 88888887641222344456788999999999999999999887653 2347788888888887777 556554
Q ss_pred HHHHHHHH
Q 000159 466 FSVLAAIA 473 (2013)
Q Consensus 466 ~~al~~l~ 473 (2013)
..-+..++
T Consensus 393 l~~II~iC 400 (877)
T KOG1059|consen 393 LTRIISIC 400 (877)
T ss_pred HHHHHHHh
Confidence 44444444
No 59
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.77 E-value=0.022 Score=64.29 Aligned_cols=130 Identities=21% Similarity=0.258 Sum_probs=100.9
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh
Q 000159 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2013)
Q Consensus 866 ~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L 945 (2013)
++.+|..++-.+..++.. .|+.....++.+..+|.|.+..|+.+|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r-----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 467899999999999863 2344456778888999999999999999999998754 45555566778999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------CCChhhHHHHHHHHHHHhcc
Q 000159 946 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1003 (2013)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~-------k~~p~~R~~~l~~L~~~l~~ 1003 (2013)
.|.++.||..|..++..+...-+ +...++.+...|.+. ..+.+-|..++.+|...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999843 344555666666532 22456678888888877763
No 60
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.06 Score=68.51 Aligned_cols=347 Identities=16% Similarity=0.153 Sum_probs=207.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccC--cc-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--~~-----~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2013)
...++.+.|.+-..++.+...+...+..... .+ ...+.++..|. .+.|..++-.+--+|+.++.....
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~-----~~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLS-----RDDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHc-----cCCChhHHHHHHHHHHHHhcCchh
Confidence 5667889999999999999999988866332 11 11344455443 244555666666667777653322
Q ss_pred CchhhH-HHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhC--hhHH-----HHHHHHHhhhCCChhHHHHHHHHHHHHH
Q 000159 677 FPKKCV-VLCLLGISERVADI--KTRAHAMKCLTTFSEAVG--PGFI-----FERLYKIMKDHKNPKVLSEGILWMVSAV 746 (2013)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~--~~~V-----l~~L~~~l~~~KnpKv~~~~l~~L~~li 746 (2013)
.++..+ ...+|.++.-+.++ -+++.|.=+|..++.... -++| +..|+..+.....-....-+...|+++.
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 222111 22466666655554 478888777777765322 1233 3344444322222234455566677766
Q ss_pred HHhCC-CCC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh-hhccHHHHHHHHHHHhhCCCCCCCC
Q 000159 747 EDFGV-SHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNPFEGTVV 823 (2013)
Q Consensus 747 ~~fG~-~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k~~~~~~p~ 823 (2013)
..--. ..+ .++.+++.+..+ +.++|++|..-|..++.+|-....+.+...+ .++-|.+.+.|...-.++. .+
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~l-l~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~----~P 298 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRL-LHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVV----TP 298 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccc----cH
Confidence 53211 122 367889999888 9999999999999998877655444455444 4556666555544211111 00
Q ss_pred CcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC-CCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000159 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2013)
Q Consensus 824 p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~-d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~ 902 (2013)
..|.+-. -. .|.|....+=|.....+-|...+. ..+-++|+||.-.|..|..+....|+.-.-..+++.|..
T Consensus 299 aLRaiGN-Iv------tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 299 ALRAIGN-IV------TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred HHhhccc-ee------eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH
Confidence 1121100 00 011111111111223345555566 556779999999999998744334554333578999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhChhhHhhhh--hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000159 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (2013)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~--~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~ 967 (2013)
.|......++.+|+-+|+.++..-.++.-.|+- .+++++...|.-....+...+..+|..+....
T Consensus 372 ~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 998888999999999999888776666555543 37788888887666666667666666665543
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.71 E-value=0.1 Score=66.98 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=149.3
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~-~~~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2013)
...++-.|..+++.+..+++ |...+ .+.+++..+...+ ..........++.++.-+++||=-.-++....++..++
T Consensus 200 ~~~~~~~~~~~~~~la~LvN--K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVN--KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45669999999998888875 34333 4677777777777 46666678888999999999886555688999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh-c-C----CC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000159 373 EKLKEKKPTVAESLTQTLQAMHKA-G-C----LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (2013)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~ai~~~-~-~----~~-----------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (2013)
+.+.+ +.+...+..++..++.- . + .+ +..++|.+..+.+..+...|...+..|..++.+.+
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 55677777777777654 0 0 01 34566777788777776799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccH
Q 000159 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (2013)
Q Consensus 436 ~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~ 490 (2013)
+..+...++.++|.+.++|+=.+++||.++.+++..+..--. ..+..+++.|-+
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~-~~i~~hl~sLI~ 409 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP-ELISEHLSSLIP 409 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHH
Confidence 988888999999999999999999999999999988876653 346666665544
No 62
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.63 E-value=6.5 Score=55.48 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHH--------HhChhhHhhhhhHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHh-cCc---hh
Q 000159 908 NKNLVMATLITLGAVAS--------AMGPAVEKSSKGVLSDILKCL----GDNKKHMRECTLTVLDAWLAA-VHL---DK 971 (2013)
Q Consensus 908 N~~V~~~Al~~l~~La~--------alg~~~~~~~~~llp~ll~~L----~D~k~~Vr~aa~~aL~~i~~~-~gl---~~ 971 (2013)
|.....-.+-++|.++. .-|+.+.+....+.-.++.+| ++.+..+|..|..+|+.++-. .++ ..
T Consensus 1185 ~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~ 1264 (1692)
T KOG1020|consen 1185 NFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSRE 1264 (1692)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHH
Confidence 44455667788888886 345555555555555555555 578899999999999988754 332 44
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHHHhc
Q 000159 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2013)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2013)
+...+...|.+.+.+...|..++.-+-.++.
T Consensus 1265 v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1265 VLNLYDEILADDNSDIKSKIQLLQNLELYLL 1295 (1692)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 5556667777654323337777776665554
No 63
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.44 E-value=0.5 Score=58.97 Aligned_cols=154 Identities=20% Similarity=0.142 Sum_probs=110.7
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHH
Q 000159 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (2013)
..|..|..+++.+..+- ..+....|+..+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 34678888877776543 2566788888999999999999999888776443 5677889999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCC
Q 000159 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024 (2013)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1024 (2013)
+.|....||.++..++..+ |...-.+.+...+.+. +..++.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 9999999999998887654 5555666777777755 3445555444443 112345566688889999
Q ss_pred ChHHHHHHHHHHHHHHHHcChhHHHHH
Q 000159 1025 SSDVRKAAEACIVEILRAGGQETIEKN 1051 (2013)
Q Consensus 1025 ~~dVR~aA~~~L~~l~~~~G~~~~~~~ 1051 (2013)
+..+|..+...+..+............
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~ 314 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLA 314 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999999888776655554444433
No 64
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.87 Score=59.22 Aligned_cols=303 Identities=14% Similarity=0.218 Sum_probs=166.9
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH---
Q 000159 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP--- 974 (2013)
Q Consensus 898 ~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~--- 974 (2013)
.++++-|+-.|-.|+-.+++.+..|-.. ..++.++|.+..+|....+-||.-|+-|+.++.... +.++|
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE~------ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~L~pDap 173 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKEP------ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EHLIPDAP 173 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCcH------HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hhhcCChH
Confidence 4445556667778888888776654321 457889999999999999999999999999999883 22222
Q ss_pred -HHHHHHhcCCCChhhH------------HHHHHHHHHHhccCCCCCChhh-hHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 975 -YVTTALTDAKLGAEGR------------KDLFDWLSKQLTGLSGFPDAAH-LLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 975 -~l~~~L~~~k~~p~~R------------~~~l~~L~~~l~~~~~~~~~~~-ll~pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
.+..+|.... .|.-+ ..++.||...+...+.-.+..+ .+.-++.--..++++-|..-.+|+-.+.
T Consensus 174 eLi~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL 252 (948)
T KOG1058|consen 174 ELIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLL 252 (948)
T ss_pred HHHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHH
Confidence 2334443221 12323 3456666666665554222222 2222222122255655555555554443
Q ss_pred HHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccc
Q 000159 1041 RAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120 (2013)
Q Consensus 1041 ~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~ 1120 (2013)
..-.....-+....|- . .+ ..|.. -
T Consensus 253 ~stssaV~fEaa~tlv-------------------~--------------------------lS--------~~p~a--l 277 (948)
T KOG1058|consen 253 SSTSSAVIFEAAGTLV-------------------T--------------------------LS--------NDPTA--L 277 (948)
T ss_pred hcCCchhhhhhcceEE-------------------E--------------------------cc--------CCHHH--H
Confidence 3322111111100000 0 00 00000 0
Q ss_pred cchhhhhhhhhcc-----cCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhh---HHHHHhhcccCHHHHHHHHH
Q 000159 1121 VQDFAVQSQALLN-----VKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR---EDLHRRLLSTDFKKQVDGLE 1192 (2013)
Q Consensus 1121 ~~~~~~~~~~~~~-----~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~---~~l~~~lfs~D~k~~~~al~ 1192 (2013)
+ ...+..+. ..+|.|- .+ .|-+-+|++....++. =+++.-|-+.|+--|-++++
T Consensus 278 k----~Aa~~~i~l~~kesdnnvkl-----Iv---------ldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktld 339 (948)
T KOG1058|consen 278 K----AAASTYIDLLVKESDNNVKL-----IV---------LDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLD 339 (948)
T ss_pred H----HHHHHHHHHHHhccCcchhh-----hh---------HHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHH
Confidence 0 00011111 0122221 00 0111112211122222 26777888999999999999
Q ss_pred HHHHhcccChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHH
Q 000159 1193 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272 (2013)
Q Consensus 1193 ~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~v 1272 (2013)
...+...+. |..-+..++..++.+||..-.-+.-.|=+.|+..+...--.|.++ |+..||.|++-+||..+..
T Consensus 340 i~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 340 IALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFISDSNEAA 412 (948)
T ss_pred HHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHhccCCHHH
Confidence 887776542 333355667778888877655566666677777777777778876 8889999999999988776
Q ss_pred HHHHHHHHHHHhhccCc
Q 000159 1273 REKMRELTKQIVNFYSA 1289 (2013)
Q Consensus 1273 r~~v~~il~~i~~v~p~ 1289 (2013)
-..|-..++.....||.
T Consensus 413 as~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 413 ASDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHHHHHHHHHHhCch
Confidence 66666666555555553
No 65
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.36 E-value=2.9 Score=51.95 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=70.4
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-----cchhHHHHHHHHHHHHHHHHHhChhhH--hhhh
Q 000159 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGPAVE--KSSK 935 (2013)
Q Consensus 863 ~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL-----~DsN~~V~~~Al~~l~~La~alg~~~~--~~~~ 935 (2013)
...+.|+|..+++.++.++.-- ..+.+-.+++++..=+..+ ...|-.|+-.+|.+++.+.+.-.-+|. +.+.
T Consensus 494 ~Ad~dkV~~navraLgnllQvl-q~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~ 572 (728)
T KOG4535|consen 494 SADKDKVKSNAVRALGNLLQFL-QPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWAS 572 (728)
T ss_pred hhhhhhhhhHHHHHHhhHHHHH-HHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchH
Confidence 4457999999999998887632 2233333577765544433 456889999999999999876443332 4567
Q ss_pred hHHHHHHHHhCCCcHH-HHHHHHHHHHHHHHhcCc
Q 000159 936 GVLSDILKCLGDNKKH-MRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 936 ~llp~ll~~L~D~k~~-Vr~aa~~aL~~i~~~~gl 969 (2013)
.+++.++..+.|-+.. ||.-|..+|.......+.
T Consensus 573 ~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~ 607 (728)
T KOG4535|consen 573 QAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQY 607 (728)
T ss_pred HHHHHHHHHHHHhccceEeehhhhhhcCCCCcccc
Confidence 7888888777765443 666666666555444443
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.35 E-value=0.023 Score=55.74 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=69.8
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000159 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2013)
Q Consensus 368 lp~LL~kl-kdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2013)
+|.|++.+ .++.+.||..+..+|.. ..-..+++.|...+++++|.||..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889999 89999999887777762 34568899999999999999999999998864 1 1557
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHH
Q 000159 447 VPICMECLND-GTPEVRDAAFSVLA 470 (2013)
Q Consensus 447 ~p~l~k~l~D-s~~~VR~aA~~al~ 470 (2013)
++.+.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888888865 55678999999885
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.32 E-value=0.092 Score=59.30 Aligned_cols=107 Identities=16% Similarity=0.273 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCC
Q 000159 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 416 (2013)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~-il~~l~~~l~~Kn 416 (2013)
|+.|+..++.+++.|+.. |...++..+|.+...|.|+.+.||..+..+|..++..+...+.. ++..++..+.+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 467888999999999875 44667778999999999999999999999999998874455544 4488888999999
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000159 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (2013)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 448 (2013)
+.||..+..++..+.....+..+...+.+++-
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999998876444444333333333
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.28 E-value=0.0079 Score=53.77 Aligned_cols=55 Identities=22% Similarity=0.182 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
|.+|..++..|+++... ....+.++++.++|.|..+|.|++++||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 78999999999884433 34446678899999999999999999999999999754
No 69
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.23 Score=63.38 Aligned_cols=309 Identities=16% Similarity=0.166 Sum_probs=184.4
Q ss_pred hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC--hh
Q 000159 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KA 437 (2013)
Q Consensus 361 ~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~-il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~--~~ 437 (2013)
....+.+...+...+.+....||.+|.++|-++... ..+.+ +.......|.+.+-.||.++++.+...-..++ ..
T Consensus 193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 333455555588888999999999999999988763 44444 45566778889999999999888776555552 11
Q ss_pred ---HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCc
Q 000159 438 ---AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSA 514 (2013)
Q Consensus 438 ---~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~ 514 (2013)
.-.++.+...-.++..+.|..-.||-.|+++||.|-.+-. +.+. ..||...+..++.- +.
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~---QTLdKKlms~lRRk--r~----------- 333 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQ---QTLDKKLMSRLRRK--RT----------- 333 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHH---HHHHHHHhhhhhhh--hh-----------
Confidence 1125567777788899999999999999999998765533 2232 33453322222110 00
Q ss_pred cccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHH
Q 000159 515 RVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEI 594 (2013)
Q Consensus 515 ~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~ 594 (2013)
++++|..- -..+..++|.. ++ .+ + +.|+.
T Consensus 334 ----------------------------ahkrpk~l----~s~GewSsGk~-------~~---ad----v-----psee~ 362 (823)
T KOG2259|consen 334 ----------------------------AHKRPKAL----YSSGEWSSGKE-------WN---AD----V-----PSEED 362 (823)
T ss_pred ----------------------------cccchHHH----HhcCCcccCcc-------cc---cc----C-----chhhc
Confidence 00000000 00000111100 00 00 0 11222
Q ss_pred HHHhhccCc----HHHHhhhcCCCHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHH
Q 000159 595 ESRLGSLIP----ADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669 (2013)
Q Consensus 595 e~~~~~~l~----~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~-~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~ 669 (2013)
++...++++ ..++.+|.+.-...|.+|+..+..+..+... .....+.|+.+ |+|----|..+++..|+.
T Consensus 363 d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM------fNDE~~~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 363 DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM------FNDEIEVVRLKAIFALTM 436 (823)
T ss_pred cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH------hccHHHHHHHHHHHHHHH
Confidence 222233443 4566778888889999999999988776322 22345566665 578888899999999999
Q ss_pred HHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHH--HhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q 000159 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTF--SEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (2013)
Q Consensus 670 l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l--~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~ 747 (2013)
++.+ ..+.+..+..++..|.|.. ..+|+...+.|... ......+.++..+++.+ .|-|+.+-+.+.++..+-+
T Consensus 437 Is~~-l~i~eeql~~il~~L~D~s--~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 437 ISVH-LAIREEQLRQILESLEDRS--VDVREALRELLKNARVSDLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRIGQ 511 (823)
T ss_pred HHHH-heecHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHHhc
Confidence 8886 4555555555554444433 34676666655432 11222344455555554 4667777777777666555
Q ss_pred HhC
Q 000159 748 DFG 750 (2013)
Q Consensus 748 ~fG 750 (2013)
.++
T Consensus 512 nH~ 514 (823)
T KOG2259|consen 512 NHR 514 (823)
T ss_pred cCh
Confidence 444
No 70
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.24 E-value=1.4 Score=52.81 Aligned_cols=241 Identities=15% Similarity=0.183 Sum_probs=162.5
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhcc
Q 000159 171 KMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250 (2013)
Q Consensus 171 ~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~ 250 (2013)
..|.+.|-+.|..+|..|+.++.++...+.++ .|...++.-|-+.|
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--------~L~~~ev~~L~~F~-------------------------- 47 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD--------FLSRQEVQVLLDFF-------------------------- 47 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--------hccHHHHHHHHHHH--------------------------
Confidence 34667788899999999999998888777642 23344443333332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 000159 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTL 330 (2013)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L 330 (2013)
.+++ .+|.-=..++..+.+|++...+..+....++..+
T Consensus 48 ----------------------------------------~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 48 ----------------------------------------CSRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred ----------------------------------------HHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHH
Confidence 1222 2333334556677777765555555555666655
Q ss_pred HHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHH
Q 000159 331 KKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 407 (2013)
Q Consensus 331 ~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~ 407 (2013)
.+.+. .--...+....+++..|...-+.....+...++..++..+ +||.|.-.--+...+..+... ..+....++
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~ 163 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAED 163 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHH
Confidence 54333 2222345666777777776655555556667888888877 788888777777888877776 555667777
Q ss_pred HHHHhh---------cCC-h--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 408 VKTSVK---------NKV-P--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 408 l~~~l~---------~Kn-p--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
+...+. .+| | -.|.+.-.-|..|+..++. + .+..+|.+..-|..+.+.|+.-+.++|......
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~--f---a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL--F---APFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh--h---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 665542 122 2 4666777778888875432 2 367889999999999999999999999999999
Q ss_pred hCchhHHHHHhhccHHHHH
Q 000159 476 VGMRPLERSIEKLDDVRRN 494 (2013)
Q Consensus 476 ~Ge~~~~~~l~~Ld~~~~k 494 (2013)
+|...+.+++..+=...|.
T Consensus 239 y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNALKF 257 (262)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9988899988887655443
No 71
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.19 E-value=1.6 Score=55.37 Aligned_cols=316 Identities=16% Similarity=0.199 Sum_probs=187.4
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhccCcc------hHHHHHHHHHhc----CCCCccc-HHHHHHHHHHHHHHHHHH---c
Q 000159 609 QLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAAT---A 674 (2013)
Q Consensus 609 ~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~lv~~L~~----~pgl~Ds-N~qV~~~~Le~l~~l~~~---~ 674 (2013)
+|.+.+--.|.+||..|...++..+... ...+.+++++.. .++=++. +..+..+++.++..++.. .
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 4567777889999999999998743321 123444444421 1222333 667888999999887753 1
Q ss_pred CCCchhhHHHHHHHHHhhhcChh-hhHHHHHHHHHHHh-hhChhHH----HHHHHHHh---hh-CCChhHHHHHHHHHHH
Q 000159 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIM---KD-HKNPKVLSEGILWMVS 744 (2013)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgD~K-~r~~a~e~L~~l~e-~~~~~~V----l~~L~~~l---~~-~KnpKv~~~~l~~L~~ 744 (2013)
..++......++...++.+.++. .|..+...|..+.+ .+++.++ ...++..+ .+ -++.-+..|.+..+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 34555556668888888888865 46666667776665 4555432 33333322 12 3445577899999999
Q ss_pred HHHHhCCCC-CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCC
Q 000159 745 AVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (2013)
Q Consensus 745 li~~fG~~~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~ 823 (2013)
++..+...= -+...-++.+... +-++...+|..|+.+...+...+|+.-. +-+.+.+.++..-.
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~~---------~s~~~~~~~~~~~~----- 225 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNKE---------LSKSVLEDLQRSLE----- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhHH---------HHHHHHHHhccccc-----
Confidence 998875421 1223344444443 6788999999999999888888875311 11222222221100
Q ss_pred CcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhccccCC-CCChhhHHHHHH
Q 000159 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQ-PAGTGELFGGLR 901 (2013)
Q Consensus 824 p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d-~~Wk~R~eale~l~~il~~a~~~I~-~~~~~eL~~~L~ 901 (2013)
+. .+...+.+.+.+.+.+ ++.+.=...=-.+-.++. +..+. ...+.+.+....
T Consensus 226 ----------------------~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 226 ----------------------NG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG--SSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred ----------------------cc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC--CchhhccHhHhHHHHHHH
Confidence 00 0011122233333444 222211111112333332 12222 233578888888
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHhChh---hHhhhhhHHHHHHHHhCCCc-----HHHHHHHHHHHHHHH
Q 000159 902 GRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDNK-----KHMRECTLTVLDAWL 964 (2013)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~---~~~~~~~llp~ll~~L~D~k-----~~Vr~aa~~aL~~i~ 964 (2013)
..++.++..++.+|+.++..+.-++..+ ..+.++.++.++...+...+ ..++.++..++..++
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 8999999999999999999999887655 34667777777777765322 267888777766554
No 72
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.14 E-value=0.036 Score=62.13 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHh-hhcchhhhHhHHHHH-----------HH-HhccCcHHHHHHHHHHHHHHHHhc---------
Q 000159 340 AVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVL-----------LE-KLKEKKPTVAESLTQTLQAMHKAG--------- 397 (2013)
Q Consensus 340 ~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~L-----------L~-klkdkk~~V~~aa~~aL~ai~~~~--------- 397 (2013)
+|+..|+.||+.+++.. ++.|..|+..++|.- +. -++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37889999999999994 566888888888865 22 347999999999999999998760
Q ss_pred ----C---CCh----HhHHH----HHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhcCCCHH
Q 000159 398 ----C---LNL----VDVVE----DVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (2013)
Q Consensus 398 ----~---~~l----~~il~----~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~Ds~~~ 460 (2013)
. +++ ..++- .|..+++ ++++.+-.++++.+..+++.++-..+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 112 22222 3445555 678889999999999999988766554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000159 461 VRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 461 VR~aA~~al~~l~~~~G 477 (2013)
||.++.-|++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
No 73
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.11 E-value=0.16 Score=62.33 Aligned_cols=184 Identities=19% Similarity=0.159 Sum_probs=122.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC----ChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhC--hhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAV 930 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~----~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg--~~~ 930 (2013)
+.+..+.+++-+.|.+||+.+..++.. +..+. .+..|+..+.+.++-....=...|+++++.++-.+| .+-
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~---~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS---RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 566778999999999999999999973 22221 145677778777755554566789999999999987 666
Q ss_pred HhhhhhHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC--chh------hHHHHHHH--Hh-cCCC-------ChhhH
Q 000159 931 EKSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH--LDK------MVPYVTTA--LT-DAKL-------GAEGR 990 (2013)
Q Consensus 931 ~~~~~~llp~ll~~L~D~k~--~Vr~aa~~aL~~i~~~~g--l~~------ll~~l~~~--L~-~~k~-------~p~~R 990 (2013)
+...+.+.|.|...+.|... .+|.++..||.-+.-.++ .+. .++.++.. ++ +.+. ++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 77888999999999988654 477888888876554433 222 23322222 22 1110 12333
Q ss_pred -HHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 991 -KDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 991 -~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
..+-.|- -.+...+. ...+...++.+...|+..+.+||.+|-+++..++....
T Consensus 204 ~aAL~aW~-lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWA-LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3333442 23333332 11234455558889999999999999999998877765
No 74
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.04 E-value=0.019 Score=56.44 Aligned_cols=85 Identities=26% Similarity=0.366 Sum_probs=68.0
Q ss_pred hHHHHhc-CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh
Q 000159 856 PTLVKSL-ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2013)
Q Consensus 856 ~~ll~~l-~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (2013)
+.|++.+ +|++|.+|.+++..+..+- -.+.++.|...++|.|..|+..|+..++.+. .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 3577777 8999999999988887321 2578899999999999999999999999773 2
Q ss_pred hhHHHHHHHHhCCC-cHHHHHHHHHHHH
Q 000159 935 KGVLSDILKCLGDN-KKHMRECTLTVLD 961 (2013)
Q Consensus 935 ~~llp~ll~~L~D~-k~~Vr~aa~~aL~ 961 (2013)
+..++.+.+.+.+. ...||.+|..+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45788889988775 5567999988874
No 75
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=2.9 Score=54.47 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=95.6
Q ss_pred cchHHHHhcCC--CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch-hHHHHHHHHHHHHHHHHHhC-hh
Q 000159 854 FTPTLVKSLES--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMG-PA 929 (2013)
Q Consensus 854 L~~~ll~~l~d--~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~~La~alg-~~ 929 (2013)
|.|.|++.|.+ .||- +=.|-++.. +-..+.|..-..|+..|...+... -..+.-.+++++-...-..| ++
T Consensus 219 LAP~ffkllttSsNNWm-----LIKiiKLF~-aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWV-----LIKLLKLFA-ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred ccHHHHHHHhccCCCee-----hHHHHHHHh-hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 56788888744 4893 233333332 224566665467777777776433 33455555554332211112 23
Q ss_pred hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC
Q 000159 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (2013)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~ 1007 (2013)
-...+..++..+-..+-|+.++.+--+.-|+..++..-. ....-+.|..+|.+. .+..|..++..+...+. .
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVs----k 366 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVS----K 366 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhh----h
Confidence 344455666677777778888888888777777765432 233344567777665 35677777777665544 2
Q ss_pred CChhhhHHHHHhhcCCCCh-HHHHHH
Q 000159 1008 PDAAHLLKPASIAMTDKSS-DVRKAA 1032 (2013)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~-dVR~aA 1032 (2013)
..+..+++-+...+.+..+ ..|..-
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHH
Confidence 3455666666666555554 445443
No 76
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.00 E-value=0.014 Score=60.55 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=83.7
Q ss_pred chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
.+.+++.+.+.+|..|..++..+..+.... ........ .++++.|...|.|.|..|+..++.+++.|+..-......+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 356778888999999999999999988521 11111111 3678888888999999999999999999987654333333
Q ss_pred hh-hHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000159 934 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 934 ~~-~llp~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2013)
.. .+++.+++.+.+.+..++..+..+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 48999999999999999999999988764
No 77
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.97 E-value=0.01 Score=46.47 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 446 l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
++|.+.++++|++++||.+|..+|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 78
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.89 E-value=0.037 Score=57.27 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=83.9
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---CCC-hH-hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLN-LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~---~~~-l~-~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2013)
.+++.+++.+.+.+..++..+..++..+.... +.. .. .+++.+...+.+.++.++..++..|..+....+.. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 37888999999999999999999999887640 000 12 56788888899999999999999999987654322 22
Q ss_pred Hhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 441 ~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
... ..+++.+.+.+++.+.++|..|..+|+.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222 448999999999999999999999998764
No 79
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.66 Score=61.04 Aligned_cols=363 Identities=20% Similarity=0.216 Sum_probs=201.9
Q ss_pred hhcCCChhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000159 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (2013)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~ 89 (2013)
+|---|+-.-+.|++==.|..+---+.+++....+ --+-.-+.+.++.++.|+|+.|-..|+.+|....+.-...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~--- 194 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV--- 194 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC---
Confidence 33344555555566655666655555555532111 0001124566677788888888888888887776654321
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHH----HHHHHHHHhhh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000159 90 YAKEVCDAIAAKCLTGRPKTVEKA----QAVFMLWVELE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (2013)
Q Consensus 90 ~~~~v~~~LveK~l~~k~~~k~~A----~~~ll~~~E~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~- 162 (2013)
....+.+.++.+.+.+....-+.+ .+++..|.--+ ..+.+++.+.+.+.|-|+-++.+++..+.+.+..+-.-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 011122333333333223333333 33333333111 13467777778888888888888888887776655430
Q ss_pred CcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 000159 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (2013)
Q Consensus 163 ~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (2013)
..-.+.+-+.+..+++... .+ ---.+++++- ++...+.....++.-.|-
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e~-------qyvaLrNi~l------il~~~p~~~~~~~~~Ff~----------------- 323 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-EI-------QYVALRNINL------ILQKRPEILKVEIKVFFC----------------- 323 (734)
T ss_pred HHHHHHhcccceeeecccc-hh-------hHHHHhhHHH------HHHhChHHHHhHhHeeee-----------------
Confidence 0012233333333443311 10 0111222210 011111111111100000
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCC
Q 000159 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (2013)
Q Consensus 243 ~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~ 322 (2013)
.+.|| .|= +.+-++.+..+++. .+
T Consensus 324 -------------------------------kynDP-----------iYv---------K~eKleil~~la~~-----~n 347 (734)
T KOG1061|consen 324 -------------------------------KYNDP-----------IYV---------KLEKLEILIELAND-----AN 347 (734)
T ss_pred -------------------------------ecCCc-----------hhh---------HHHHHHHHHHHhhH-----hH
Confidence 11121 110 12234444444431 23
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000159 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (2013)
Q Consensus 323 ~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~ 402 (2013)
..++...|+..-.+..+..+..|++||+.+|...... ..++..+|+.+.-+...|++.+...+..++.+..-..+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 5567778888778999999999999999999877654 67899999999988888999999999999988223346
Q ss_pred hHHHHHHHHhhc-CChHHHHHHHHHHHHHH-HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 403 DVVEDVKTSVKN-KVPLVRSLTLNWVTFCI-ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 403 ~il~~l~~~l~~-Knp~vR~~~l~~L~~~l-~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.++..+...+.+ .+|..| .++.||..-. +..+ ....++..+.+...|...+| ..+.+.+.+++|+.+
T Consensus 423 ~vv~~l~~~~~sl~epeak-~amiWilg~y~~~i~------~a~elL~~f~en~~dE~~~V---ql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAK-AALIWILGEYAERIE------NALELLESFLENFKDETAEV---QLELLTAAIKLFLKK 491 (734)
T ss_pred hhhhhhcccccccCChHHH-HHHHHHHhhhhhccC------cHHHHHHHHHhhcccchHHH---HHHHHHHHHHHHhcC
Confidence 677777666664 678887 4566665422 2222 22556677788888888777 567777777777754
No 80
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=1.1 Score=59.18 Aligned_cols=375 Identities=14% Similarity=0.198 Sum_probs=196.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2013)
..++..+.+.||..|--|++.+..+ ..+...+.++.-+.+ +++|.+.-|+..+--.+..+-...++.. ...
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l-----~v~~i~ey~~~Pl~~--~l~d~~~yvRktaa~~vakl~~~~~~~~--~~~ 159 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCL-----RVDKITEYLCDPLLK--CLKDDDPYVRKTAAVCVAKLFDIDPDLV--EDS 159 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeE-----eehHHHHHHHHHHHH--hccCCChhHHHHHHHHHHHhhcCChhhc--ccc
Confidence 3456778899999999998776522 111123334443332 4678888887766555444333222221 112
Q ss_pred HHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH----HhC
Q 000159 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVE----DFG 750 (2013)
Q Consensus 684 ~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~-------~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~----~fG 750 (2013)
-+++.|-+-+.|. -+-..|..+|..+.|.... ..+...++.. ..+|-+|-.-.|- .+-
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a---------l~ec~EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEA---------LNECTEWGQIFILDCLAEYV 230 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH---------HHHhhhhhHHHHHHHHHhcC
Confidence 3445555555554 3556666677777775431 1222223322 2344555333332 222
Q ss_pred C-CCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccccc
Q 000159 751 V-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2013)
Q Consensus 751 ~-~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2013)
. ...+...+++.+... |+|.|+.|-=++.+++..+-.++..--..++..+.|.+...+..+= ...+ ...|.++
T Consensus 231 p~d~~ea~~i~~r~~p~-Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qy----vaLrNi~ 304 (734)
T KOG1061|consen 231 PKDSREAEDICERLTPR-LQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQY----VALRNIN 304 (734)
T ss_pred CCCchhHHHHHHHhhhh-hccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhH----HHHhhHH
Confidence 2 223455788888887 9999999988888887665544433111122222222111111000 0000 0000000
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhH
Q 000159 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909 (2013)
Q Consensus 830 ~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~ 909 (2013)
-- ... ...+-..++ .-|+=...|.-+ ++.+-++-+..++... ++.+++.-|+..-.+-..
T Consensus 305 li--l~~-----~p~~~~~~~-----~~Ff~kynDPiY-vK~eKleil~~la~~~-------nl~qvl~El~eYatevD~ 364 (734)
T KOG1061|consen 305 LI--LQK-----RPEILKVEI-----KVFFCKYNDPIY-VKLEKLEILIELANDA-------NLAQVLAELKEYATEVDV 364 (734)
T ss_pred HH--HHh-----ChHHHHhHh-----HeeeeecCCchh-hHHHHHHHHHHHhhHh-------HHHHHHHHHHHhhhhhCH
Confidence 00 000 000000111 011111222222 3344444444444322 146677777888888888
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCCh
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p 987 (2013)
..+..++++++.+|...... ..++..++..+.-+..-|.+.+...+..+.+.++ ++.+++.+...+.+=. +|
T Consensus 365 ~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~-ep 438 (734)
T KOG1061|consen 365 DFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQ-EP 438 (734)
T ss_pred HHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccC-Ch
Confidence 99999999999998665433 5678888888887788888888889999998885 4556555544443211 46
Q ss_pred hhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHH
Q 000159 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKA 1031 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~a 1031 (2013)
+.|.. +-||....... -++...++.-++....|....|+-.
T Consensus 439 eak~a-miWilg~y~~~--i~~a~elL~~f~en~~dE~~~Vql~ 479 (734)
T KOG1061|consen 439 EAKAA-LIWILGEYAER--IENALELLESFLENFKDETAEVQLE 479 (734)
T ss_pred HHHHH-HHHHHhhhhhc--cCcHHHHHHHHHhhcccchHHHHHH
Confidence 66655 44543322211 1244566666777777777666653
No 81
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.76 E-value=0.21 Score=61.33 Aligned_cols=403 Identities=18% Similarity=0.159 Sum_probs=191.7
Q ss_pred hccCCChHHHHHHHHHHHHHhhccCCCCchHHHhh------------hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000159 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIREL------------GPLFKKTVADSNAPVQDKALDALIAYLKAADAD 86 (2013)
Q Consensus 19 rl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~------------~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~ 86 (2013)
+..|-.-|.|..|+--+....+.++.. .-|.-+ ..++.-.++|.|+.+..-+|+.+.+++.....
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~--~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~- 80 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKK--VLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ- 80 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhh--hhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-
Confidence 456677899999998888877654211 111100 12233369999999999999999888876532
Q ss_pred hhhhHHHHHHHHHHhhcCCChhHHH------HHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhC
Q 000159 87 AGRYAKEVCDAIAAKCLTGRPKTVE------KAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG 160 (2013)
Q Consensus 87 ~~~~~~~v~~~LveK~l~~k~~~k~------~A~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG 160 (2013)
|-....+ +-+-.|+ |=... .+-.|++...|.| -.|-++..|+.+|..++.+-.
T Consensus 81 fls~a~~----~~~~~ft--pf~v~~a~si~~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p 139 (728)
T KOG4535|consen 81 FLSVAED----TSDHAFT--PFSVMIACSIRELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAP 139 (728)
T ss_pred HHHHHhc----cCCcCCC--chHHHHHHHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCc
Confidence 2111000 0000011 10111 1222333333322 356678888888888887644
Q ss_pred CCCcC---hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHH--hcC-CCCCCC
Q 000159 161 AKIIP---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELV--NVS-GTARPT 234 (2013)
Q Consensus 161 ~~~i~---~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~--k~~-~~~~P~ 234 (2013)
...+. +-.+.-++.++..|+|++||-.+..++..|. |.. +-++.+| ..|..... +.. .-..|.
T Consensus 140 ~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v---~t~-------~~~pei~-~~~~~~~s~~n~~~~h~s~~ 208 (728)
T KOG4535|consen 140 YDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV---STH-------APLPEVQ-LLLQQPCSSSNSATPHLSPP 208 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---hcC-------CCCHHHH-HHhcCCCccccccCCCCCCh
Confidence 33322 2346778899999999999999888766554 221 1112221 11100000 000 000010
Q ss_pred ccchhhhhHhhhhhccccCCCCCCCCCCC--CCCCCCCCCCCCCCcccccccCcchhhh------hhhcc--CCHHHHHH
Q 000159 235 RKIRAEQDKELGQELISEDVGPGPSEEST--ADVPPEIDEYELVDPVDILTPLEKSGFW------EGVKA--TKWSERKD 304 (2013)
Q Consensus 235 R~~rs~~~~~~~~ea~~~~~g~~~~~~~~--~~~~~~iD~~dl~~~vdIl~kl~~~~f~------~~l~s--~kWkeR~e 304 (2013)
... ++.. ++++.+.. +.+.+...+--++.++--..-+++.+-+ ..+++ .---.|.|
T Consensus 209 ~~~-----~~l~---------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle 274 (728)
T KOG4535|consen 209 DWW-----KKLP---------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLE 274 (728)
T ss_pred HHH-----HhcC---------CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHH
Confidence 000 0000 01110000 0000111111122221111111211111 11111 22346889
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh--hhHhHHHHHHHHhccCc---
Q 000159 305 AVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLEKLKEKK--- 379 (2013)
Q Consensus 305 aL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~--~~~~llp~LL~klkdkk--- 379 (2013)
+++-|..++..-.+...-+.++.+++.+.+.|.-..+-.-+.+|+..+..++.....| .-..+....+-..--.+
T Consensus 275 ~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~ 354 (728)
T KOG4535|consen 275 ALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLP 354 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCCh
Confidence 9888877764322333445677888888888999999999999999999988743321 11112212111111111
Q ss_pred --------HHHHHHHHHHHHHHHHhcCCChHh----HHHHHHHHh-hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000159 380 --------PTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2013)
Q Consensus 380 --------~~V~~aa~~aL~ai~~~~~~~l~~----il~~l~~~l-~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2013)
.....++..++-.|.......+++ ..+....+. +|||--+|.+++..+.-.+-+..-..........
T Consensus 355 ~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a 434 (728)
T KOG4535|consen 355 RALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA 434 (728)
T ss_pred hhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence 112223333333332211112221 222333343 4777777777776665544433222211223444
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 000159 447 VPICMECLNDGTPEVRDAAFSVLA 470 (2013)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~al~ 470 (2013)
...+...+.|+.=.+|..++=+++
T Consensus 435 a~~il~sl~d~~ln~r~Kaawtlg 458 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLG 458 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhh
Confidence 455556666666666666554443
No 82
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=3.8 Score=54.30 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=60.2
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 000159 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (2013)
Q Consensus 938 lp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~ 1008 (2013)
=..+++||+|....+|.-|.+-+-.++..-.+..++..+..+|... .++.|.++...+.+..+.+.+..
T Consensus 352 r~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP~k 420 (866)
T KOG1062|consen 352 RSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESS--DEDFKADIASKIAELAEKFAPDK 420 (866)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCCcc
Confidence 4688999999999999999999999999999999999999999855 57899999999888877776543
No 83
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.64 E-value=9.9 Score=48.44 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHh--hhcc-hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhhcCCh
Q 000159 344 EAIQAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVKNKVP 417 (2013)
Q Consensus 344 ~A~~~l~~La~~L--~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il---~~l~~~l~~Knp 417 (2013)
.|-.+|..|+..+ |..| +..+..++=.+++.|..+....|++.-.++..+..- + ++++ ..|+.-++.+.|
T Consensus 40 ~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~ 115 (898)
T COG5240 40 SARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVP 115 (898)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCc
Confidence 3445666666655 5678 688999999999999999999999999999888653 1 3332 344555567777
Q ss_pred -HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000159 418 -LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (2013)
Q Consensus 418 -~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 466 (2013)
.+|-.++.-|.+.+..... ..+-..+..+.-|+.+.+|.+|.
T Consensus 116 ~~~kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal 158 (898)
T COG5240 116 DDVKPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL 158 (898)
T ss_pred cccccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH
Confidence 7888888888877764322 33445677788899999998875
No 84
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.42 Score=59.72 Aligned_cols=211 Identities=16% Similarity=0.139 Sum_probs=139.7
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
.+.+.+.+.+|+.|...+--+..+...+.+.. +..++++..+.....|++..++..||.+|+.++.++..+.-.|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 45556788999999988887877776555553 67889999999999999999999999999999999877777788888
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHh-cCCChHhH----HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---H
Q 000159 368 LPVLLEKLKE-KKPTVAESLTQTLQAMHKA-GCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---A 438 (2013)
Q Consensus 368 lp~LL~klkd-kk~~V~~aa~~aL~ai~~~-~~~~l~~i----l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---~ 438 (2013)
+-.++-.+-| -+..|.-.+..||..+... ....+..+ .-.+..-+++-++++|..+...++.+..-.+.. .
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 8877777755 3456666677777776654 11222222 222334556889999999988888766544322 2
Q ss_pred HHH-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHH
Q 000159 439 VLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (2013)
Q Consensus 439 l~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~ 500 (2013)
+.. ..+.+.| +.-.++|++|.|-.|.+..+-+..--++-+....++++.-+..+..+++.+
T Consensus 381 Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fy 442 (533)
T KOG2032|consen 381 FTEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFY 442 (533)
T ss_pred hHHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHH
Confidence 211 1123333 223479999999777776665544444434455555533233333444433
No 85
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.23 Score=61.92 Aligned_cols=191 Identities=17% Similarity=0.174 Sum_probs=133.1
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~-~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
+.....+..|+.|....-.+.++... +.+.. ..+++++..|..+..|++..++..|+++++.++..+......|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 33455667899999988888877752 23332 2368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHH-------HHHHHhcCCCChhhHHHHHHHHHHHhccCCC--
Q 000159 937 VLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY-------VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-- 1006 (2013)
Q Consensus 937 llp~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl~~ll~~-------l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-- 1006 (2013)
++-.++..|-| .+..|.-.++.||..+......+.+-++ +.+.+.+. +++.|...+-.+.. +..+..
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~-L~~l~g~~ 376 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGA-LAKLAGGG 376 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHH-HHHHcCCC
Confidence 99888877765 4567888888899888887654443332 22334444 46778765544332 222221
Q ss_pred -CCChh----hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000159 1007 -FPDAA----HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2013)
Q Consensus 1007 -~~~~~----~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2013)
...+. .-..|++-.|+|+++-|-.|.+..+......++-+....++.
T Consensus 377 ~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 377 WEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred chhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 11222 234467778899999998888877776666666555555543
No 86
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.45 E-value=0.077 Score=59.06 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=98.8
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHH---HHHhChh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 929 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~-a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~L---a~alg~~ 929 (2013)
+.+-|++++...+.--|.-|.+.+.+++.. +..+|.|-. .+|+..|+..|+-.|..|...+|++++.| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 446889999888877888899999999986 556777764 89999999999999999999999999999 7788999
Q ss_pred hHhhhhhHHHHHHH----H--hC-----CCcHHHHHHHHHHHHHHHHhcCchhhH
Q 000159 930 VEKSSKGVLSDILK----C--LG-----DNKKHMRECTLTVLDAWLAAVHLDKMV 973 (2013)
Q Consensus 930 ~~~~~~~llp~ll~----~--L~-----D~k~~Vr~aa~~aL~~i~~~~gl~~ll 973 (2013)
+-+|.++++|.+-- . ++ ..+..+++....+|..+-++.|-+.++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 99999999998762 1 22 245678899999999888888866543
No 87
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.42 E-value=0.018 Score=51.53 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000159 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (2013)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i 963 (2013)
+.|+..|+.+|+.++...+..+.+|...++|.++..|.|.+..||.+|..||..+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999888888899999999999999999999999999999998753
No 88
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=3.9 Score=53.96 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 987 AEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
..+|.++...|++... . ...+. .+..-+..|+.|++-+||+.|..++..+-
T Consensus 480 ~ivRaaAv~alaKfg~--~-~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 480 AIVRAAAVSALAKFGA--Q-DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHHHHHHHHHhc--C-CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 5678888887776541 1 12233 34444778999999999999999887765
No 89
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=5.2 Score=52.54 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=81.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhc-C
Q 000159 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD-A 983 (2013)
Q Consensus 905 ~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~-~ 983 (2013)
.|.|.++ -.+.-+..+. ..-+..+..++..++..|....-.||..+..-.-.++.+-....++..+..-+.. .
T Consensus 292 sdnnvkl--Ivldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~ 365 (948)
T KOG1058|consen 292 SDNNVKL--IVLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTH 365 (948)
T ss_pred cCcchhh--hhHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcc
Confidence 4555443 2334444444 3345667788899999999999999999888888888877777777766655531 1
Q ss_pred C----CChhhHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 984 K----LGAEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 984 k----~~p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
+ -+-.=|+.++..+..+-.+.+ ++. ..++-++..+.|.|+..-...-..+...+..++
T Consensus 366 ~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 366 NEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred ccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 0 022347888888876654433 344 444458888999988544443333333333333
No 90
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.12 E-value=26 Score=50.03 Aligned_cols=51 Identities=27% Similarity=0.279 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHHHHHHHHhcC
Q 000159 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVPYVTTALTDA 983 (2013)
Q Consensus 933 ~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~--~gl~~ll~~l~~~L~~~ 983 (2013)
.+..+++.+++++-|..-.+|..|++.+.-+++. +++-..+|.++..-.++
T Consensus 1336 i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp 1388 (1692)
T KOG1020|consen 1336 IMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDP 1388 (1692)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCCh
Confidence 4567889999999999999999999999888876 45677788777655544
No 91
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.02 E-value=20 Score=48.36 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCC
Q 000159 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKL 985 (2013)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~ 985 (2013)
..|+..++-+++.++-+-| +.++.++|.+++-|.-+.. .||.-.+-++..++.+.. .+.++|.|...|.++
T Consensus 945 ~~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp-- 1018 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP-- 1018 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--
Confidence 3477788888888887654 4566778888888865554 599999999999998874 689999999999988
Q ss_pred ChhhHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 986 GAEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 986 ~p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
.+.+|..++..|++.++.--. .+. .+.--++..|-|.+++||.-|..|+..+...=-
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~v--Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIV--KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhh--hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence 589999999999988763211 111 233346667899999999999999998876543
No 92
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.86 E-value=1.1 Score=57.09 Aligned_cols=145 Identities=16% Similarity=0.036 Sum_probs=93.7
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (2013)
+.++..+.+.+..+|..++..+... . .+-...|+..|+|.+..|+..|+.+++.+...
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r------~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAH------R------HDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhh------c------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 4567778888999998888555431 1 22345677778899999999999999986632
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHH
Q 000159 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2013)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2013)
..+|.+...+.|.++.||.+|+.++..+ |-..-++.+....... +...+..+..++... .....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~--------~~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA--------GGPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC--------CchhHHH
Confidence 3455677779999999999999888444 3334444444433322 223344444444321 1125556
Q ss_pred HHHhhcCCCChHHHHHHHHHHHH
Q 000159 1016 PASIAMTDKSSDVRKAAEACIVE 1038 (2013)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~L~~ 1038 (2013)
.|...+.|.. ||..+..+++.
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~ 264 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGL 264 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHH
Confidence 6777777755 88887777764
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.78 E-value=0.46 Score=59.31 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=110.0
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (2013)
..+++.+.+.+|-+|..+...+..+- -.+.++.|...+.|.+..|+..|..+++.+. .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 46778889999999999987754332 2678899999999999999999988655432 23
Q ss_pred hHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCC--------Ch--hhHHHHHHHHHHHhccC
Q 000159 936 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL--------GA--EGRKDLFDWLSKQLTGL 1004 (2013)
Q Consensus 936 ~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~--------~p--~~R~~~l~~L~~~l~~~ 1004 (2013)
..++.++..|. |.+..||..+..+|..+...-. +..+...+.+... .+ .+|..+..-+...
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---- 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL---- 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----
Confidence 56777888777 8999999999999987765444 3444555554320 01 2444444444321
Q ss_pred CCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
.....+.++...+.|...+||.+|..+|..+...
T Consensus 177 ----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 177 ----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred ----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 2245566688899999999999999999887665
No 94
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=0.34 Score=62.39 Aligned_cols=206 Identities=16% Similarity=0.190 Sum_probs=131.7
Q ss_pred ccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhCh
Q 000159 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2013)
Q Consensus 849 dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2013)
|+...+-.-++...++++-++|...++-+..++. .+..|....|..|...|..|+.|.-++|+.+|+.++..+-.--+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 3433344466788899999999999999988886 346666666888899999999999999999999988876532221
Q ss_pred hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC
Q 000159 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (2013)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~ 1008 (2013)
+=.+. ..++-.++ -.|+.+.||.+|..++.- . ...+|.|.+--.+- +...|.-+...+...+ ... ..
T Consensus 160 ee~~v-~n~l~~li--qnDpS~EVRRaaLsnI~v--d----nsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r-~l 226 (892)
T KOG2025|consen 160 EECPV-VNLLKDLI--QNDPSDEVRRAALSNISV--D----NSTLPCIVERARDV--SGANRRLVYERCLPKI-DLR-SL 226 (892)
T ss_pred CcccH-HHHHHHHH--hcCCcHHHHHHHHHhhcc--C----cccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhh-hh
Confidence 11121 12222222 269999999998665521 1 22345555544443 3456777776665554 111 12
Q ss_pred ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH-----HHHHHHHHHH
Q 000159 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP-----ALALILERIK 1068 (2013)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~-----~~~~i~~~l~ 1068 (2013)
....-+.-+-..|+||.-+||.+++.++..=.-.+-+..+.+.+..|+-+ ..+.|++.++
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 23344444667999999999999999886422222233456677777643 3344555544
No 95
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.47 E-value=0.64 Score=50.07 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=82.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. ++-.+..++.. ++..-.+.+.+|++||+..|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 14 l~~~dw~----~ileicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWE----AIQAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHH----HHHHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 4566885 44455555542 233347899999999999999999999999999999999999754 366888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000159 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (2013)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L 980 (2013)
.+++.+.. ....|++-+...+..|.....-++-+......|
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~L 131 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYDML 131 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 88888853 457899999999999998875333233333333
No 96
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=10 Score=51.55 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=65.5
Q ss_pred ccccccCcchhhhhhhccCCHHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Q 000159 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR 354 (2013)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~---l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~ 354 (2013)
++|..++- ..-...+++++-..|.+||+-|.- ++ +.+...-.-.+...+.+..++.+.|.-++..|+.||..++.
T Consensus 798 v~iv~kIl-~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 798 VKIVLKIL-GRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHH-HHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34443443 233334688999999999998754 33 33322222344555667778889999999999999999997
Q ss_pred Hhhhcc-hhhhHhHHHHHHHHhccC
Q 000159 355 GLRTHF-SGSSRFLLPVLLEKLKEK 378 (2013)
Q Consensus 355 ~L~~~f-~~~~~~llp~LL~klkdk 378 (2013)
.-|.=. .++.+.++|.+-..|.+.
T Consensus 877 ~sgDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 877 YSGDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 655322 266777777776666553
No 97
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.43 E-value=0.26 Score=67.02 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCCh
Q 000159 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p 987 (2013)
-....+.++..++..||..+.+ +-..+|.++.++......+|.++..|+.++..... ...+++.+...+.+- .-
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~ 868 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DK 868 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hh
Confidence 4556778888888889998888 77889999999999999999999999999998754 334455555555432 11
Q ss_pred hhHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhH-------HHHHhccCCh
Q 000159 988 EGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET-------IEKNLKDIQG 1057 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~-------~~~~l~~L~~ 1057 (2013)
..|+.....+-.++..... .+-..-+++|++.++.|....||.+|.+++..+...++.+. |.+.+-..+.
T Consensus 869 ~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke 948 (1549)
T KOG0392|consen 869 FVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKE 948 (1549)
T ss_pred HhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHH
Confidence 2333333333333332221 22334567789999999999999999999999999888654 3333333333
Q ss_pred HHHHHHHHHHHh
Q 000159 1058 PALALILERIKL 1069 (2013)
Q Consensus 1058 ~~~~~i~~~l~k 1069 (2013)
..++.|+.+++.
T Consensus 949 ~erkFLeqlldp 960 (1549)
T KOG0392|consen 949 EERKFLEQLLDP 960 (1549)
T ss_pred HHHHHHHHhcCc
Confidence 444555555443
No 98
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.26 E-value=0.57 Score=50.85 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=78.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+...||. .+-.|...+. .. +..-.+.+.+|++||...|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~----~il~icD~I~---~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWG----LILDVCDKVK---SD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHH----HHHHHHHHHh---cC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 3456895 3334455543 11 23347899999999999999999999999999999999998754 466888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000159 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.+.+.+.+ ....|++-+...+..|.....-
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 88888888 7788999999999999988763
No 99
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.19 E-value=21 Score=48.51 Aligned_cols=166 Identities=19% Similarity=0.124 Sum_probs=97.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHH-HHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~-~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (2013)
+.+++-+.|.+|+..+-..+..+ +++..++. .++... -.|..+....--.+-..++.= + .-+...+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~-P---~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLK-P---ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccC-H---HHHHHHHHH
Confidence 67888999999988887666522 22344433 333333 333434333323333333221 1 345566788
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhh--hHHHHH
Q 000159 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH--LLKPAS 1018 (2013)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~--ll~pl~ 1018 (2013)
+.+-|+|.++.+|..|+.+|..+-..-=++.+++.|...+.++ +|.+|..+.-.+.+.+.--.. ...+ .+..+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~--l~~~~g~~~~l~ 172 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKD--LYHELGLIDILK 172 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHh--hhhcccHHHHHH
Confidence 8889999999999998888876532211234444555556565 578888888877776642211 0111 222233
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1019 IAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
..+.|.++.|-.+|..+|..+..-
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 455788888888887777666543
No 100
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.11 E-value=0.071 Score=41.72 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1014 LKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
++.+.++++|++++||.+|..+|+.+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 55688999999999999999999998875
No 101
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.06 E-value=0.4 Score=60.95 Aligned_cols=119 Identities=20% Similarity=0.115 Sum_probs=88.1
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH
Q 000159 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (2013)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il 405 (2013)
.+..|...+.|.+..|...+.+.|+.+- -....+.|+..+++..+.||.++..++...- .+-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 4778888888888888888888887642 3456677888889999999987765554321 1234
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 406 ~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
+.+...|++.+|.||.+++..|..+=. ...+|.|..++.|.+++||.+|..++..+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 667777889999999999888765311 33456677889999999999999998543
No 102
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.02 E-value=0.86 Score=55.58 Aligned_cols=165 Identities=20% Similarity=0.224 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHhccccCCCCC----hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh
Q 000159 870 RLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2013)
Q Consensus 870 R~eale~l~~il~~a~~~I~~~~----~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L 945 (2013)
-..|+|-.+-|.. .+.+.. +.=....|...+.-+.-+|+-.-++++....--+|+.+.+.++.++..++-.+
T Consensus 72 H~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 72 HQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGL 147 (307)
T ss_pred HHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccc
Confidence 3446666665554 233321 12234555666788888999999999999988999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCC------C--------CCChh
Q 000159 946 GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDAA 1011 (2013)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~------~--------~~~~~ 1011 (2013)
-|....+.+.+...++.+...+|-+-+...++..+.+ +|..|..++.|+.+.++... . .++..
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPG 224 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCcc
Confidence 9999999999999999999999988888888888764 47899999999999998866 1 12334
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 1012 ~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
-++..+..||+|.+-=|+..+-..| ..++.
T Consensus 225 Llv~al~~~L~D~~iLVqR~~LDlL---l~~~P 254 (307)
T PF04118_consen 225 LLVRALCACLEDENILVQRGFLDLL---LSHFP 254 (307)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHH---HHhCC
Confidence 4566688899999888887765544 55554
No 103
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.83 E-value=0.81 Score=49.09 Aligned_cols=100 Identities=21% Similarity=0.348 Sum_probs=78.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh-hh-hHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SK-GVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~-~llp 939 (2013)
+.+.||. ++-+|..+++. . +..-.+.+.+|+++|+..|.+++..|+.++..+++..|..|... .. .++-
T Consensus 13 ~~~~D~~----~il~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWA----LNLELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 3556885 45556666642 1 33347899999999999999999999999999999999998653 33 5777
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000159 940 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (2013)
Q Consensus 940 ~ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2013)
.+++.+.. ....|+.-+...+..|....+-+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46679999999999999988653
No 104
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.79 E-value=0.35 Score=65.84 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHH
Q 000159 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (2013)
Q Consensus 300 keR~eaL~~L~~l~~--~pki~~~~~~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (2013)
-+|+.|...|..+.. ++.+. ..|..+-..|.+.+. |.|- -....+..+..++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 467877777766653 22221 224445455555554 3331 3445567777778778887878 78899999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcCC-ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000159 375 LKEKKPTVAESLTQTLQAMHKAGCL-NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (2013)
Q Consensus 375 lkdkk~~V~~aa~~aL~ai~~~~~~-~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (2013)
....-..+|-++..|+..+++..|. ....+++.+..-++.-.--+|++...-+..++.......+.++..-+++.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 9999999999999999999986221 122344555555554445566666555555555444334556778899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCchh-------HHHHHhhccHHHHHHHHHHHhc
Q 000159 454 LNDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAG 502 (2013)
Q Consensus 454 l~Ds~~~VR~aA~~al~~l~~~~Ge~~-------~~~~l~~Ld~~~~kki~e~~~~ 502 (2013)
+.|....||++|.+++..+..+++.+. +-..+-.....-++.|+..++.
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldp 960 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDP 960 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCc
Confidence 999999999999999999999988542 2223333333445556655543
No 105
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=14 Score=48.25 Aligned_cols=184 Identities=20% Similarity=0.244 Sum_probs=122.0
Q ss_pred CCCCCcHhHHHHHHHHHHHHHHhhChhHHh-hhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 767 GLQSSAAATRNATIKLLGALHKFVGPDIKG-FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 767 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~-~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
||+.+|.+||..|..++..+|-..||+... -++ ..+++.|.
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD-------~i~~kQf~------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMD-------SIIQKQFE------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccHHHHH-------HHHHHHHH-------------------------------
Confidence 489999999999999999999888887531 111 11222222
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-cchhHHHHHHHHHHHHHHHH
Q 000159 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVAS 924 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~ 924 (2013)
.+++.++|.--.+|-+|++.+.++...-=--|.++...+++..+..-+ .|+-..|+..+.+.+..|+-
T Consensus 224 -----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~ 292 (1005)
T KOG1949|consen 224 -----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD 292 (1005)
T ss_pred -----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc
Confidence 344556666677899999999888864322344454556665555544 68888999999998888763
Q ss_pred HhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHH--HHHHHHhcCCCChhhHHHHHHHHHHH
Q 000159 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 925 alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~--~gl~~ll~--~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2013)
.+...+.++.++|.+=-.|.|+...||-|+...|-.+-.+ ...-.+++ .+..-|...+ .+..|.-+...+..+
T Consensus 293 --np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~-~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 293 --NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS-RPVSRRLVSLIFNSF 369 (1005)
T ss_pred --CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc-cHHHHHHHHHHHHhh
Confidence 3445567888999888999999999999998888765432 23333433 4555555443 244444444444444
Q ss_pred hc
Q 000159 1001 LT 1002 (2013)
Q Consensus 1001 l~ 1002 (2013)
|+
T Consensus 370 lP 371 (1005)
T KOG1949|consen 370 LP 371 (1005)
T ss_pred cC
Confidence 43
No 106
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.51 E-value=13 Score=44.76 Aligned_cols=186 Identities=12% Similarity=0.153 Sum_probs=126.5
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc--chhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHH
Q 000159 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (2013)
Q Consensus 866 ~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~--DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~ 943 (2013)
+|..=..++..+..++. . +.+.+.....++..+.+... .--...|....+++..+...-...+......++..+++
T Consensus 53 D~~~~~~~l~gl~~L~~-~-~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 53 DHACVQPALKGLLALVK-M-KNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ 130 (262)
T ss_pred cHhhHHHHHHHHHHHHh-C-cCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH
Confidence 44444455667777774 2 44554444566666655332 23456778888888888877666666666778888888
Q ss_pred Hh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------cC-CCCh--hhHHHHHHHHHHHhccCCCCCChhh
Q 000159 944 CL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------DA-KLGA--EGRKDLFDWLSKQLTGLSGFPDAAH 1012 (2013)
Q Consensus 944 ~L-~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-------~~-k~~p--~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (2013)
.. +++.|.----+..-+..++....++.+.+.+.+.+. .+ ..+| -.|.++-.-|..++... +.+.+
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~---~~fa~ 207 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST---PLFAP 207 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc---HhhHH
Confidence 76 456665555566666777777777777777666654 11 1012 35677777787777633 34555
Q ss_pred hHHH-HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000159 1013 LLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (2013)
Q Consensus 1013 ll~p-l~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~ 1056 (2013)
.+-| ++..|....+.|+.-+-+.|......+|.+.+.++...+=
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw 252 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIW 252 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 5555 8889999999999999999999999999999998876553
No 107
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.37 E-value=2.2 Score=57.42 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=112.7
Q ss_pred hccCCHHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000159 294 VKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~-l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2013)
+.+++=++|++|++.+.+ +..+. |...++.-+.|-+.--|.-+....---+...++.= ...+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~-----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~----P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE-----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK----PELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHH
Confidence 677888899999998755 44432 35666665555555444444443333333333321 145778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HHHHHH
Q 000159 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (2013)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 451 (2013)
+-|.|+++.+|-.|..++..+=.. -=+..+++.|..++.|+++.||..++-.+..+++... .. +... .+..+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHH
Confidence 999999999998776666544221 1124456677788899999999999999998886422 11 1233 456677
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 452 ECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 452 k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.++.|++|.|-.+|..+|..+..-
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 788999999988888888766543
No 108
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.18 E-value=1.8 Score=54.93 Aligned_cols=202 Identities=18% Similarity=0.198 Sum_probs=129.4
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
+-..++.+.++++-++|+..++-+.-+.. +-+.|....|.-|...|..|+-|..+.|+.+|+.++..+-.--+.+ +.+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHH
Confidence 33466788899999999999998887775 3345555556778888889999999999999999998876443333 233
Q ss_pred hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC--CChh
Q 000159 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAA 1011 (2013)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~ 1011 (2013)
...++-.++ -.|....||.+|. ++-.+..-. .|.|.+-..+- +..-|..+...+ ++.++.. ....
T Consensus 170 ~~n~l~~~v--qnDPS~EVRr~al--lni~vdnsT----~p~IlERarDv--~~anRr~vY~r~---Lp~iGd~~~lsi~ 236 (885)
T COG5218 170 IVNLLKDIV--QNDPSDEVRRLAL--LNISVDNST----YPCILERARDV--SGANRRMVYERC---LPRIGDLKSLSID 236 (885)
T ss_pred HHHHHHHHH--hcCcHHHHHHHHH--HHeeeCCCc----chhHHHHhhhh--hHHHHHHHHHHH---hhhhcchhhcccc
Confidence 333333332 3688889999973 332333323 34444443332 234465555443 4444331 1223
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhc
Q 000159 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (2013)
Q Consensus 1012 ~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~ 1070 (2013)
..+.-+--.|.|+.-+||+++..++..-...--+-.+...+..|+-+..+.+..++++.
T Consensus 237 kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 237 KRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334445899999999999998887544443344566677888877777666666664
No 109
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.08 E-value=1.3 Score=47.92 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=77.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.+|. .+-.+.++++. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 17 l~~~dw~----~ileicD~In~--~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 17 LGEPDLA----SILEICDMIRS--K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred cCccCHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 3456885 34445555542 1 22247899999999999999999999999999999999998753 455777
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchh
Q 000159 940 DILKCLG-DNKKHMRECTLTVLDAWLAAVHLDK 971 (2013)
Q Consensus 940 ~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2013)
.+.+.+. .....|++-+...+..|.....-+.
T Consensus 88 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 88 ELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 7777776 4566799999999999998876443
No 110
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=92.96 E-value=1.1 Score=48.03 Aligned_cols=98 Identities=21% Similarity=0.401 Sum_probs=75.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.+|. .+-.+.++++ .. +..-.+.+.+|++||...|.+++..|+.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~----~~l~icD~i~---~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWE----LILEICDLIN---ST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHH----HHHHHHHHHh---CC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 4566885 3344555553 22 23347899999999999999999999999999999999999754 345777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcC
Q 000159 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 940 ~ll~~L~D~k~--~Vr~aa~~aL~~i~~~~g 968 (2013)
.+.+.+.++.. .|+..+...+..|.....
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 77777766443 399999999999999875
No 111
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.95 E-value=0.51 Score=51.10 Aligned_cols=108 Identities=29% Similarity=0.510 Sum_probs=78.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.+|. ++-.|.++++. . +..-.+.+.+|+++|...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 18 ~~~~Dw~----~~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWS----LILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HH----HHHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHH----HHHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 4556884 34445555542 2 33348899999999999999999999999999999999999754 355777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHHHHH
Q 000159 940 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPYVTT 978 (2013)
Q Consensus 940 ~ll~~L~D~k~--~--Vr~aa~~aL~~i~~~~gl~~ll~~l~~ 978 (2013)
.+.+.+.++.. . |++.+...|..|....+-+.=++.+.+
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~ 131 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQD 131 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHH
Confidence 77776665443 2 899999999999999864443444433
No 112
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=29 Score=45.72 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=84.3
Q ss_pred ChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000159 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (2013)
Q Consensus 892 ~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2013)
.+..-+..|.+.|.+...+++-.|++.+..|+.. +... ..++.-.-.++..|+ +..-.||+-|..-|-+|+..-...
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~-davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak 403 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSI-DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK 403 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchH-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH
Confidence 3455666777778888888999999988888866 2222 234444777888898 899999999999999999998889
Q ss_pred hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC
Q 000159 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2013)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2013)
.++..+..+|.+. .+..|.++.--++-.-+++.+
T Consensus 404 ~IV~elLqYL~tA--d~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 404 QIVAELLQYLETA--DYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcC
Confidence 9999999999876 467898877665544344433
No 113
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.81 E-value=35 Score=45.09 Aligned_cols=199 Identities=15% Similarity=0.125 Sum_probs=120.6
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCCc--C-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChH
Q 000159 138 KNKVAKAVVPAIDVMFQALSEFGAKII--P-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRD 214 (2013)
Q Consensus 138 ~~KnpKv~~~~l~~L~~~l~~fG~~~i--~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~ 214 (2013)
-.|++-+..-.+..+..++..|...-. + +.+++.++.+..+..|++||-....++.-+.-..+. +.+
T Consensus 52 vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e--idd-------- 121 (892)
T KOG2025|consen 52 VKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE--IDD-------- 121 (892)
T ss_pred eccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc--cCH--------
Confidence 467777777777888777777664322 1 457889999999999999998876665444332221 112
Q ss_pred HHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh
Q 000159 215 TMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 294 (2013)
Q Consensus 215 ~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l 294 (2013)
+++.++. ..+..++
T Consensus 122 -----------------------------------------------------------------~vfn~l~-e~l~~Rl 135 (892)
T KOG2025|consen 122 -----------------------------------------------------------------DVFNKLN-EKLLIRL 135 (892)
T ss_pred -----------------------------------------------------------------HHHHHHH-HHHHHHH
Confidence 2333332 3444555
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHH
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (2013)
.+..-..|.+|+..|..+-..++ ++=-+++..++..|. |++.-|++.|+-+|..= ...+|-+++
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vd------------nsTlp~Ive 200 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAALSNISVD------------NSTLPCIVE 200 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhhccC------------cccchhHHH
Confidence 55555667888877776653222 122356777777787 99999999888777432 245677888
Q ss_pred HhccCcHHHHHHHHHH-HHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHH
Q 000159 374 KLKEKKPTVAESLTQT-LQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (2013)
Q Consensus 374 klkdkk~~V~~aa~~a-L~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~ 428 (2013)
+.+|=+..+|.-+-+- |-.+ ..-..+.+.-+-.+--|+.++.-.||.++...|.
T Consensus 201 RarDV~~anRrlvY~r~lpki-d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il 255 (892)
T KOG2025|consen 201 RARDVSGANRRLVYERCLPKI-DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAIL 255 (892)
T ss_pred HhhhhhHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 8888777766543322 2222 1101333333344445666666666666555443
No 114
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.60 E-value=5 Score=47.98 Aligned_cols=302 Identities=16% Similarity=0.127 Sum_probs=167.4
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~-a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
|.+...+-+.+-.....|+-++++++.. .++.|++-.-..+++-|...+ .-.+..+.-.|.=++..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4677777788888889999999999973 455666643344555666656 34455667778778888886654321111
Q ss_pred h-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-cCch------hhHHHHHHHHhcCCCChhhH-HHHHHHHHHHhccC
Q 000159 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAA-VHLD------KMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGL 1004 (2013)
Q Consensus 934 ~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~-~gl~------~ll~~l~~~L~~~k~~p~~R-~~~l~~L~~~l~~~ 1004 (2013)
+ -.-+|.++..|.++...||+.+.=+|+.++.- .++. ..++.+...|.+.+ +++. ..-+.|....+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence 1 13579999999999999999999999877632 1211 12333444444332 2111 23345544444322
Q ss_pred C-CCCCh---hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCCCCCCCCCC
Q 000159 1005 S-GFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (2013)
Q Consensus 1005 ~-~~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~ 1080 (2013)
. +.+++ ...++.+.+.+.-++++|-.-|.-++..+... ..+.+... |+......+.+.+-....
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-~~E~i~av---ld~g~~~RLvElLs~~sa-------- 299 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-PNEKIQAV---LDVGIPGRLVELLSHESA-------- 299 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-cHHHHHHH---HhcCCcHHHHHHhcCccc--------
Confidence 2 23343 44455577788888888877665554433211 11122211 111111123333211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhh---------cccCCCChHHHhhhhhcccc
Q 000159 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL---------LNVKDSNKEDRERMVVRRFK 1151 (2013)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~k~~R~~~~~~k~~ 1151 (2013)
.+.+++.|+.. ...+ +.+.+++.+ +.+..+.|+ ++|+. .=|.
T Consensus 300 -------------~iqtPalR~vG--NIVT------------G~D~QTqviI~~G~L~a~~~lLs~~ke-~irKE-aCWT 350 (526)
T COG5064 300 -------------KIQTPALRSVG--NIVT------------GSDDQTQVIINCGALKAFRSLLSSPKE-NIRKE-ACWT 350 (526)
T ss_pred -------------cccCHHHHhhc--Ceee------------cCccceehheecccHHHHHHHhcChhh-hhhhh-hhee
Confidence 00111111100 0000 011222221 223333333 55432 3487
Q ss_pred ccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhccc
Q 000159 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200 (2013)
Q Consensus 1152 f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~ 1200 (2013)
...-+....|+.+.-|..-+-+-|+..|-+.||+-+.+|.=.+.....+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7766667778888888888888899999999999999988777766544
No 115
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=29 Score=45.69 Aligned_cols=295 Identities=17% Similarity=0.165 Sum_probs=168.9
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCCChH
Q 000159 106 RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQN 183 (2013)
Q Consensus 106 k~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~ 183 (2013)
++.-.-.|..|+-.+-+.+-.+.+.+.+-+.+- .--+=|...+-.+|-.+++.+. ..+++......+..+|+|.+=+
T Consensus 124 n~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~sp-Dl~~~~~W~~riv~LL~D~~~g 202 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSP-DLVNPGEWAQRIVHLLDDQHMG 202 (938)
T ss_pred CcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCc-cccChhhHHHHHHHHhCccccc
Confidence 444455666666655555545555555544432 1223344455556666666643 4677778888999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC---------CCC---CccchhhhhHhhhhhccc
Q 000159 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT---------ARP---TRKIRAEQDKELGQELIS 251 (2013)
Q Consensus 184 VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~---------~~P---~R~~rs~~~~~~~~ea~~ 251 (2013)
|-.++..++..|.++..+. .+.- + +-++..|..-.-...-. +.| +..+|--|.- |.
T Consensus 203 v~ta~~sLi~~lvk~~p~~-yk~~----~-~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~------p~ 270 (938)
T KOG1077|consen 203 VVTAATSLIEALVKKNPES-YKTC----L-PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY------PT 270 (938)
T ss_pred eeeehHHHHHHHHHcCCHH-Hhhh----H-HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC------CC
Confidence 9999999998888887653 2221 1 22344443322111100 111 0111211110 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHH---HHHHHHHHhcCCCCCCCChHHHHH
Q 000159 252 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKD---AVAELTKLASTKRIAPGDFTEVCR 328 (2013)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~e---aL~~L~~l~~~pki~~~~~~~l~~ 328 (2013)
. .+.+. -.--.+.. ..|+.|.. +.-.++|-+.+-. .|-+...++.+-.-.+.-+..-+.
T Consensus 271 ~--~D~~~---------r~~l~evl--~~iLnk~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~ 332 (938)
T KOG1077|consen 271 P--EDPST---------RARLNEVL--ERILNKAQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVN 332 (938)
T ss_pred C--CCchH---------HHHHHHHH--HHHHhccc-----cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0 00000 00000000 02222221 1123444444432 222233333332233345667777
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhcch-hhhHhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChHhHHH
Q 000159 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVE 406 (2013)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klk-dkk~~V~~aa~~aL~ai~~~~~~~l~~il~ 406 (2013)
.|.+.|.+...+++..|+..+..|+.. .|. ..++.-...++..++ |+...||.-+...|-+++.. ....+|++
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~ 407 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVA 407 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHH
Confidence 888888866666888887777776654 443 234555778888998 89999999999999888875 56789999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000159 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (2013)
Q Consensus 407 ~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (2013)
+++..+.+-.+.+|++...=++.+.++...
T Consensus 408 elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988777776666543
No 116
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.91 E-value=0.76 Score=61.15 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhh----hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000159 323 FTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLR----THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 323 ~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~----~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~ 396 (2013)
|+++++.|...+. +...+ +..+..|+..++ .-.-|....++|-||+.+.-....||-++..++..+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~K-----~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQK-----HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHhhHHHHHHHhccCCccch-----hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 5666666666554 11111 233344444443 124578889999999999999999999998998876654
Q ss_pred -c---CCChHhHHHHHHHHh-hcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000159 397 -G---CLNLVDVVEDVKTSV-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2013)
Q Consensus 397 -~---~~~l~~il~~l~~~l-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al 469 (2013)
+ +.+++.++|.++.-- .++| -.||..+++-|..+.+..|...+..+-+.++.++.++|+|...-||+.|..+=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1 234566777776533 3554 57899999999988777787777778899999999999999999999999876
Q ss_pred HHHH
Q 000159 470 AAIA 473 (2013)
Q Consensus 470 ~~l~ 473 (2013)
...+
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5543
No 117
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.90 E-value=2.1 Score=51.02 Aligned_cols=303 Identities=14% Similarity=0.128 Sum_probs=163.6
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhc--cCcchHH-----HHHHHHHhcCCCCcccHHH--HHHHHHHHHHHHHHHc
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLDQSV-----EILVRLVCMLPGWSEKNVQ--VQQQVIEVINYLAATA 674 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~--~~~~~~~-----~~lv~~L~~~pgl~DsN~q--V~~~~Le~l~~l~~~~ 674 (2013)
+.+.++|.|.+....+.|+-++.+++... .+.+... +-++.++ |.+.. ..-.+-=+++.++...
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm-------~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFM-------DEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHH-------HhcchhHHHHHHHHHHhhhccCc
Confidence 78889999999999999999999998652 2332211 2222222 21111 1111111223333221
Q ss_pred CCCchhhH-HHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhC--hhHH-----HHHHHHHhhhCCC-hhHHHHHHHHHH
Q 000159 675 TKFPKKCV-VLCLLGISERVADI--KTRAHAMKCLTTFSEAVG--PGFI-----FERLYKIMKDHKN-PKVLSEGILWMV 743 (2013)
Q Consensus 675 ~~~~~~~~-~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~--~~~V-----l~~L~~~l~~~Kn-pKv~~~~l~~L~ 743 (2013)
.+-++-.+ ...+|.++.-|.++ -+|+++.=+|..++.-.. -++| ++-++..+.+++. -+...-+-..|+
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 11111100 12466677666664 478888777777654211 1233 3334443322222 233334444566
Q ss_pred HHHHHhCCC--CCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh-hhccHHHHHHHHHHHhhCCCCC
Q 000159 744 SAVEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNPFEG 820 (2013)
Q Consensus 744 ~li~~fG~~--~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k~~~~~ 820 (2013)
++...-... --++...++.+.++ +-..+++|-.-|.-.+.+|.....+.+...+ ..+++.+.+.|..+-.++..
T Consensus 227 NlcRGknP~P~w~~isqalpiL~KL-iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt-- 303 (526)
T COG5064 227 NLCRGKNPPPDWSNISQALPILAKL-IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT-- 303 (526)
T ss_pred HhhCCCCCCCchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC--
Confidence 665422211 12356677888888 8888998888887777766543333344444 45566666666665444421
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHH
Q 000159 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900 (2013)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L 900 (2013)
| ..|-+- .- -.|.|.-..+-|-.-..+.|...+++++-.+|+||--.+..|-.+....|+.-.-.+|++.|
T Consensus 304 P--alR~vG-NI------VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpL 374 (526)
T COG5064 304 P--ALRSVG-NI------VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL 374 (526)
T ss_pred H--HHHhhc-Ce------eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHH
Confidence 1 112110 00 01122222222322334567777888888999999777766654322233332225688888
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHH
Q 000159 901 RGRLYDSNKNLVMATLITLGAVASA 925 (2013)
Q Consensus 901 ~~rL~DsN~~V~~~Al~~l~~La~a 925 (2013)
...|.-..-.+...||=.+.....+
T Consensus 375 i~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 375 IHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8999888888999998877765543
No 118
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.90 E-value=4.9 Score=49.18 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=111.6
Q ss_pred ccCCHHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhc-chhhhHhHHH
Q 000159 295 KATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLP 369 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~--~pki~~-~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp 369 (2013)
..++|.+-...|..|.+.++ .+.+.- ..=..+.+.|.+++. ..-.-|-..|+++.+.+.+.++.+ +........|
T Consensus 21 ~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 21 SSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 46999999999999988776 333322 334578899999998 888889999999999999888754 3444444444
Q ss_pred HHHHHhccCcHHHHH-----------------------------------------HHHHHHHHHHHhcCCChHhHHHHH
Q 000159 370 VLLEKLKEKKPTVAE-----------------------------------------SLTQTLQAMHKAGCLNLVDVVEDV 408 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~-----------------------------------------aa~~aL~ai~~~~~~~l~~il~~l 408 (2013)
+|+.-+.-....|+- .+...++.+... ++-+-+...+
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~--v~~~~F~~~l 178 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA--VGDKYFWQCL 178 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh--cChhHHHHHH
Confidence 444444444444433 333333333221 2222222222
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHhcC-----------hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000159 409 KTSVKNKVPLVRSLTLNWVTFCIETSS-----------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 409 ~~~l~~Knp~vR~~~l~~L~~~l~~~~-----------~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
..++- .+|.+|..++.|+.+-+.... ...+...-.-++.++..+++|.+--|+..+...|..
T Consensus 179 wl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 179 WLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 22222 578999999999988776543 111122235688899999999999998877776653
No 119
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=1.8 Score=51.88 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=114.5
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
+.+.|++.+.|.+-|++..|--.++.+...- ..+.+-.-..-++.|.+.|.|.-...+....-||..|+..-+...--.
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 5568888899999999988888888776431 111111001123456666788888888888889988887655542211
Q ss_pred hhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCC
Q 000159 934 SKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2013)
Q Consensus 934 ~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g--l-----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2013)
=..|+.+++..|.-... .+.=+|..+|..++.+.. . ..-+|.+.+.+.+.. ..++.++-..++..--.-.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALNDN 408 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhccc
Confidence 12466677776654333 366677788887776431 1 223456666666653 4566665555543211111
Q ss_pred CCCCh--hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000159 1006 GFPDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1006 ~~~~~--~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~ 1043 (2013)
....+ .-+++.++..+.|.+.+||.+|.++|..|...+
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 11111 234555777889999999999999998775443
No 120
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.78 E-value=26 Score=50.43 Aligned_cols=236 Identities=15% Similarity=0.124 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChh------hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHH
Q 000159 663 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK------TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (2013)
Q Consensus 663 ~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K------~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~ 736 (2013)
.++++..++...-.. -..+|..|+.+++.+. -+..|..++..++.+..+ .+.+.+...+...++ ...
T Consensus 164 ~~~i~~~li~e~d~v----~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~-~i~~f~~~~~~~~~s--~~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTV----QSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLED-TIANFLNSCLTEYKS--RQS 236 (1266)
T ss_pred HHHHHHHHHHhhccc----hHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhch-hHHHHHHHHHhhccc--ccc
Confidence 666666666543222 2334555556655532 244455555555554433 223333333322111 111
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhh
Q 000159 737 EGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2013)
Q Consensus 737 ~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2013)
..-.-.+++|-+.-.-.. -+-.+++.+..- |.+.+-.+|-.|..++|.|+...+.-+. +
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------- 296 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------- 296 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c---------------
Confidence 111122233322211000 123567777665 8889999999999999999854432110 0
Q ss_pred CCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000159 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (2013)
Q Consensus 816 ~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~e 895 (2013)
.. .-+-..|+..+.|..-.+|.+.++....++.. ++.+... ..
T Consensus 297 ----------------------------~~------~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 297 ----------------------------TY------DDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred ----------------------------cc------hHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 00 01335788899999999999999999988863 2222211 34
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000159 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (2013)
Q Consensus 896 L~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~ 966 (2013)
+..+|+.+..|-+.+++...+.....++ .-.+ .+...++..+.+++.|++..||..|+..|..+.++
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~v~---~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACDVM---KFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEeehh---Hhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5666777777877776654433221111 1111 23333777888899999999999999999999985
No 121
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=91.66 E-value=1.4 Score=45.82 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh--HHHHHHH-----H
Q 000159 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILK-----C 944 (2013)
Q Consensus 872 eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~-----~ 944 (2013)
..+..|..++.+ .+....+++.+|.+||.+.|+.++..||.++..+++..|..|..++.. ++-.+++ .
T Consensus 19 ~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 19 PLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred HHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccc
Confidence 455666666542 133468999999999999999999999999999999999999876433 3333332 1
Q ss_pred h-CCCcHHHHHHHHHHHHHHH
Q 000159 945 L-GDNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 945 L-~D~k~~Vr~aa~~aL~~i~ 964 (2013)
. .+....||+.+...+..|.
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHh
Confidence 1 2456789999999998885
No 122
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.32 E-value=15 Score=49.46 Aligned_cols=198 Identities=17% Similarity=0.198 Sum_probs=123.8
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC-CCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhh
Q 000159 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (2013)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~-~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (2013)
+++.+..+ ..+-+-++..++..|..+++..-.. .+....++..+... +.|.|+-|==.|++.++.|......++
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 4566778999999999999844222 23455688888888 999999999999996666654444332
Q ss_pred hhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHH
Q 000159 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (2013)
Q Consensus 798 L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l 877 (2013)
-|.+.+..+.+-.+.+ .| .|..-=|.+
T Consensus 804 ----l~dL~e~Y~s~k~k~~------------------------------~d-------------------~~lkVGEai 830 (982)
T KOG4653|consen 804 ----LPDLSEEYLSEKKKLQ------------------------------TD-------------------YRLKVGEAI 830 (982)
T ss_pred ----HHHHHHHHHhcccCCC------------------------------cc-------------------ceehHHHHH
Confidence 2222222222211110 00 000011334
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh-CCCcHHHHHHH
Q 000159 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECT 956 (2013)
Q Consensus 878 ~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D~k~~Vr~aa 956 (2013)
.+++..- +.+....++.|...+...+.|+....+..++..+|.++.........++..++..++... .|....||.||
T Consensus 831 ~k~~qa~-Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 831 LKVAQAL-GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 4444321 122222245667777777788888899999999999998876555556666666666544 58889999999
Q ss_pred HHHHHHHHHhcCchhhHHHH
Q 000159 957 LTVLDAWLAAVHLDKMVPYV 976 (2013)
Q Consensus 957 ~~aL~~i~~~~gl~~ll~~l 976 (2013)
...+......+| ..++|.+
T Consensus 910 v~li~~lL~~tg-~dlLpil 928 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPIL 928 (982)
T ss_pred HHHHHHHHhccc-hhhHHHH
Confidence 999999988888 3334433
No 123
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=91.29 E-value=2.4 Score=46.01 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=76.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-chhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~ll 938 (2013)
+...||.. .-.|.+.++. ....-.+.+.+|++||. ..|.+|+..||.++..+++.+|..|... .+.|+
T Consensus 14 l~~~dw~~----ileicD~In~-----~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGL----NMEICDIINE-----TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 45568863 3334444431 22234789999999997 4689999999999999999999999754 35677
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCchhhHHH
Q 000159 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLDKMVPY 975 (2013)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl~~ll~~ 975 (2013)
.. +++.+.+ ....|+.-+...+..|.....-+.=++.
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 125 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTG 125 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchH
Confidence 76 6777754 3357999999999999988754433333
No 124
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=5.1 Score=49.06 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=109.6
Q ss_pred CChHHHHHHHHHHHHHHHh---ccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh-HHHH
Q 000159 865 PDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG-VLSD 940 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~---a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~-llp~ 940 (2013)
.+-..|..|++.|+.++.. |+..+. +|-+...|. .+++++..|+..|+.+|+..+..=.+--....+. .+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~---~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLIS---LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhh---ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 3566788999999999874 222222 244555555 8999999999999999999886644333333222 6677
Q ss_pred HHHHhC-CCcHHHHHHHHHHHHHHHHhc--CchhhHH-----HHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCC-hh
Q 000159 941 ILKCLG-DNKKHMRECTLTVLDAWLAAV--HLDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-AA 1011 (2013)
Q Consensus 941 ll~~L~-D~k~~Vr~aa~~aL~~i~~~~--gl~~ll~-----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~-~~ 1011 (2013)
++..|. |..-.+|..|.-|+..++++- |.+.++. .+.++|+++..+...+.-++..+...+.......+ ..
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 777776 444568899999999999985 4555655 57888887544566777777777777665543222 11
Q ss_pred hhHHH--HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1012 HLLKP--ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1012 ~ll~p--l~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
.+..+ +.....--..+++.++..++-.+...
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 11111 11122223345666665555444433
No 125
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.11 E-value=2.3 Score=52.28 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhchhhhh--hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhcCChhhH
Q 000159 71 KALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAV 145 (2013)
Q Consensus 71 ~~leal~~~v~~~~~~~~~--~~~~v~~~LveK~l~-~k~~~k~~A~~~ll~~~E~~~--~~~v~~~L~~~~~~KnpKv~ 145 (2013)
+.|..+...+++...+... ...+++..||-.++. ..+.+|+.|..|+=.++=++. ....+..+...+....+.+.
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 3566677777776533332 235788888888776 578999999999888876543 34556666777766688999
Q ss_pred HHHHHHHHHHHHHhCCCCcCh----------hHHHHhhhhhhcCCChHHHHHHHHHHHHHH
Q 000159 146 VPAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (2013)
Q Consensus 146 ~~~l~~L~~~l~~fG~~~i~~----------k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (2013)
..|+.++..++-.||...+.- ..+++.+.+.+.+.+++||..|..-+..|+
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999876532 358899999999999999999988887776
No 126
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.78 E-value=0.74 Score=60.07 Aligned_cols=183 Identities=19% Similarity=0.243 Sum_probs=127.4
Q ss_pred cccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhh
Q 000159 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (2013)
Q Consensus 852 ~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~ 930 (2013)
..+.+-+++.++..+-.+|.--|+.+.+.+. .+.+.. -.++++.+...+.|.|..++.+++.++..||..++..
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 3456678888899999999999999988885 444432 2678899999999999999999999999999999887
Q ss_pred HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCCCChhhHHHHHHHHHHHhccCCC
Q 000159 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2013)
Q Consensus 931 ~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl---~~ll~-~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2013)
..-..++-.+-..-.|....+|+-..-||..+..+... ..++. .+..+++++- .|.-..+++.+.+ ..++-.
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~~ 479 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYFD 479 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--cccccc
Confidence 33345666666666689999999999999988877632 22222 3445666652 2322344443332 222222
Q ss_pred CCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000159 1007 FPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1007 ~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~ 1043 (2013)
..++. ++++-+...+.|.+..||..|..++..+...+
T Consensus 480 ~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 480 QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 22333 33334556679999999999998887665544
No 127
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.77 E-value=0.83 Score=60.84 Aligned_cols=144 Identities=20% Similarity=0.181 Sum_probs=108.3
Q ss_pred cccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccc-cCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhCh
Q 000159 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2013)
Q Consensus 850 Is~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~-~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2013)
+...+.|.+...+....--+|-.=++.+..++..-.+ -+.|. +..|++.|.+.|+=....|+..+++++..+....+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~-~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ-FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc-hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 3445666677766644445555566677777763222 23444 588999999999888888889999999999999999
Q ss_pred hhHhhhhhHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhcCCCChhhHHHHHHH
Q 000159 929 AVEKSSKGVLSDILKCLGDNK---KHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2013)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k---~~Vr~aa~~aL~~i~~~~gl-------~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2013)
-...|+..++|.++..-.|++ ..||..|.+||+.+.+.++. +.++-.+.+.|.|+|. -+|.++...
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKR--lVR~eAv~t 1018 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKR--LVRKEAVDT 1018 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHH--HHHHHHHHH
Confidence 999999999999999988877 67999999999999997653 4455566677777753 567776543
No 128
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.47 E-value=1.5 Score=49.17 Aligned_cols=91 Identities=19% Similarity=0.147 Sum_probs=71.7
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHHh
Q 000159 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI---AKSV 476 (2013)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l---~~~~ 476 (2013)
.++.+++.+.+++.++.-.-+--+.+-+..+++......+.++++.+++.+..+|+-.+++|..++.++|..+ ...+
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4566788889999876655555555555555665344456788999999999999999999999999999999 8889
Q ss_pred CchhHHHHHhhccHH
Q 000159 477 GMRPLERSIEKLDDV 491 (2013)
Q Consensus 477 Ge~~~~~~l~~Ld~~ 491 (2013)
|+ ++.||+.+|-+.
T Consensus 115 G~-aLvPyyrqLLp~ 128 (183)
T PF10274_consen 115 GE-ALVPYYRQLLPV 128 (183)
T ss_pred hH-HHHHHHHHHHHH
Confidence 96 488998877653
No 129
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.39 E-value=3.7 Score=50.49 Aligned_cols=127 Identities=16% Similarity=0.098 Sum_probs=92.0
Q ss_pred HHHHHHHhhhcchhh--hHhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHH
Q 000159 349 IGNLARGLRTHFSGS--SRFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLN 425 (2013)
Q Consensus 349 l~~La~~L~~~f~~~--~~~llp~LL-~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~ 425 (2013)
+..+-+.....+.+. ...++..++ ..+..+.+.||+.+..||.-+.-.......+.++.+...++.....+|..+++
T Consensus 7 ~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~ 86 (298)
T PF12719_consen 7 TQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALK 86 (298)
T ss_pred HHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333333333445443 346666665 55677788999999999987665411223456677777787778999999999
Q ss_pred HHHHHHHhcChhHHHHh--------hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 426 WVTFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 426 ~L~~~l~~~~~~~l~~~--------l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.+..++-.++...+... ...+...+.+.+.+.++++|..|.+++..+.-.
T Consensus 87 ~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 87 ALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999988876544322 257888999999999999999999999988743
No 130
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.34 E-value=2.7 Score=46.60 Aligned_cols=146 Identities=12% Similarity=0.169 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000159 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 397 (2013)
Q Consensus 321 ~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~--~~ 397 (2013)
.+|.+|+..|.+.++ +.+..++.++++++|.|+. .+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 468999999999998 7778999999999999873 44554332211111 100 01111111121111 11
Q ss_pred CCChHhHH-----HHHHHHhhcCC-hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000159 398 CLNLVDVV-----EDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 398 ~~~l~~il-----~~l~~~l~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
..+.++.. ..+..-|++++ ..-...+++.+..+|...+... .++++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11334433 33445555544 4555567777777776655444 57789999999999999999999999988888
Q ss_pred HHHHhC
Q 000159 472 IAKSVG 477 (2013)
Q Consensus 472 l~~~~G 477 (2013)
+...++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 877653
No 131
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=8 Score=51.54 Aligned_cols=176 Identities=19% Similarity=0.215 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHHhc--CCCCCCC-ChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhH-hHHHHHH
Q 000159 298 KWSERKDAVAELTKLAS--TKRIAPG-DFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 372 (2013)
Q Consensus 298 kWkeR~eaL~~L~~l~~--~pki~~~-~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~-~llp~LL 372 (2013)
+-..-.+|+.+|..++. +..-..+ -...+++.|.+++. +.|.-+...||+||.+|+..+....+-.++ ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 55566788888877552 2222222 24689999999999 889999999999999999999877654433 5889999
Q ss_pred HHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhHHH-----HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000159 373 EKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVE-----DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2013)
Q Consensus 373 ~klkd-kk~~V~~aa~~aL~ai~~~~~~~l~~il~-----~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2013)
+||-. .=-.|.+...+||..|-+. +..+|+. ..+..+.==.-.+.+.++...+.|-....+..+ ..+-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 98865 4456778888888777653 3334432 112222212223444555566666555554433 334667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000159 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
+|.|+..|...+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999988888888888888877765543
No 132
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.75 E-value=0.89 Score=59.37 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=78.1
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
.|-..++|.|++.|+-....||--+..=++..+.+- ..--+.|+|.+..++.+.|+.+|..|+..+..++....+..+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 578889999999999999999988877777777661 112357889999999999999999999999988877665543
Q ss_pred HHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 440 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
. -+++..+.++-.|.++..|....-|++.+.
T Consensus 406 n---~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 406 N---GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred c---HHHHHHHHhhCccccCcccccceeeecccc
Confidence 2 334445555555555555555555554443
No 133
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.53 E-value=5.1 Score=43.60 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=68.5
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 000159 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~D-s~~~VR~aA~~al~~l~~~ 475 (2013)
..+..+.+..|..-++++||.+-..++..|..|+.+++...... .-+.++..+.+.+.+ .+++||+-..+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 35667788888888899999999999999999999998753222 237788889999988 8999999999999999888
Q ss_pred hCch
Q 000159 476 VGMR 479 (2013)
Q Consensus 476 ~Ge~ 479 (2013)
+...
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8754
No 134
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=89.19 E-value=2.7 Score=47.47 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHh-ChhhHhhhhhHHHHH------------HHHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000159 910 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI------------LKCLGDNKKHMRECTLTVLDAWLAAVH-------- 968 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~al-g~~~~~~~~~llp~l------------l~~L~D~k~~Vr~aa~~aL~~i~~~~g-------- 968 (2013)
+|++.|+.+++.+++.. ++.|..|-..|+|.- .-.+.|..+-+|.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47899999999999994 556778888888755 335679999999999999999987642
Q ss_pred --------------chhhHH----HHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC---CC-hhhhHHHHHhhcCCCCh
Q 000159 969 --------------LDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PD-AAHLLKPASIAMTDKSS 1026 (2013)
Q Consensus 969 --------------l~~ll~----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~-~~~ll~pl~~~L~D~~~ 1026 (2013)
+..++- .+.-+|+.++ ++..-..+++-++-.++..+-. .+ +..++..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 011111 2334454443 3455567777777666655432 23 34455556777888999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 000159 1027 DVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1027 dVR~aA~~~L~~l~~~~ 1043 (2013)
+||.++..|++.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999998876543
No 135
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.15 E-value=1.8 Score=46.92 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHHhhhhhhc-CCChHHHHHHHHHHHHHHHhhC
Q 000159 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFD-HQDQNVRASSKGLTLELCRWIG 200 (2013)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~-~~d~~VR~~a~~l~~ely~~lG 200 (2013)
++...+.+|.+.+.++||+++.-+|..|-.++++=|... +.-+.|+..|.+++. +.+..||+....++.+-+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 467888899999999999999999999999999877632 334778888998886 6789999999999988887776
Q ss_pred C
Q 000159 201 K 201 (2013)
Q Consensus 201 ~ 201 (2013)
.
T Consensus 118 ~ 118 (142)
T cd03569 118 N 118 (142)
T ss_pred C
Confidence 4
No 136
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.86 E-value=69 Score=40.64 Aligned_cols=170 Identities=19% Similarity=0.141 Sum_probs=103.4
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHH
Q 000159 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (2013)
++--+|.+|+.-++.++.-. +....- -..++.++.....+.+-..+..+++++.+++-. .+.+--++.. +..+++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv~~~gG-~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-KGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELVAECGG-IRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-CCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHHHHcCC-HHHHHHH
Confidence 45678999999999999741 111111 256788888888888888999999999988843 2333222222 3666777
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC-----CCChh-hHH-HHHHHHHHHhccCCCC----
Q 000159 945 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA-----KLGAE-GRK-DLFDWLSKQLTGLSGF---- 1007 (2013)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~-----k~~p~-~R~-~~l~~L~~~l~~~~~~---- 1007 (2013)
+.|....+.++...++-.++.+-. .+.-++.+...+.+. +.+.+ .|. .....+...+..|+.-
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 777554577777777766665432 122233343333322 11121 242 3334455667777652
Q ss_pred CChhhhHHHHHhhcCCCChHHHHHHHHHHHH
Q 000159 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (2013)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~ 1038 (2013)
.+-..-++.++.+|.-++.++|+.....+-.
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~d 266 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFD 266 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1222567778888988999999887655543
No 137
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.64 E-value=6.1 Score=47.22 Aligned_cols=176 Identities=17% Similarity=0.158 Sum_probs=110.0
Q ss_pred hhhcCCChhhh-ccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHh-hhcC-CcHHHHHHHHHHHHHHHHHhch
Q 000159 9 KEAKKLPWEDR-LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVAD-SNAPVQDKALDALIAYLKAADA 85 (2013)
Q Consensus 9 ~~~~~lpl~er-l~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k-~v~D-sN~~vqe~~leal~~~v~~~~~ 85 (2013)
.|+-.+|+... +.+++-+.|..|...|...-.. .++......|...+.+ .+.+ -|-.+|..||.+|..+--..
T Consensus 51 r~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-- 126 (254)
T PF04826_consen 51 RDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-- 126 (254)
T ss_pred HHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--
Confidence 45556666544 4568889999998888765322 2333344556555544 3444 48999999999987763111
Q ss_pred hhhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh------hhHHHHHHHHhhcCCh-hhHHHHHHHHHHHHHH
Q 000159 86 DAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV------DVFLDVMEKAIKNKVA-KAVVPAIDVMFQALSE 158 (2013)
Q Consensus 86 ~~~~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~------~~v~~~L~~~~~~Knp-Kv~~~~l~~L~~~l~~ 158 (2013)
+.-......++.++.=...+...+|..+..+++.+.+-... ..+...+..-|..+.+ .+...+|.++..+-+.
T Consensus 127 ~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 127 DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 11112233455554322236888999999999988865321 1344455555665544 4577777777777777
Q ss_pred hCCCC--c---------------ChhHHHHhhhhhhcCCChHHHHHH
Q 000159 159 FGAKI--I---------------PPKRILKMLPELFDHQDQNVRASS 188 (2013)
Q Consensus 159 fG~~~--i---------------~~k~il~~l~~ll~~~d~~VR~~a 188 (2013)
++... . ..+.+-+.|..++.|+|+.||+..
T Consensus 207 ~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 207 IKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred hCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 76642 1 124577888899999999999863
No 138
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=87.80 E-value=91 Score=39.70 Aligned_cols=311 Identities=15% Similarity=0.171 Sum_probs=169.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhh----hHhhhcC-------CcHHHHHHHHHHHHHHHHHhchh-
Q 000159 20 LLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPL----FKKTVAD-------SNAPVQDKALDALIAYLKAADAD- 86 (2013)
Q Consensus 20 l~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~----~~k~v~D-------sN~~vqe~~leal~~~v~~~~~~- 86 (2013)
|.+.+=-.|.+||-.|...++.... ++.....+..++ ++.=+.. -+...-..||.++..|+-.....
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 4556667899999999999986532 222223332222 2222222 25566678899998888553220
Q ss_pred -hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---------hhhhhHHHHHHH---HhhcCChhhHHHHHHHH
Q 000159 87 -AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---------EAVDVFLDVMEK---AIKNKVAKAVVPAIDVM 152 (2013)
Q Consensus 87 -~~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~---------~~~~~v~~~L~~---~~~~KnpKv~~~~l~~L 152 (2013)
.. .....++...++..-+ ...-|..+...+..+.+- +.++.++..+.. .+.++ -++.+.+.++
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~-~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~--si~~erL~i~ 158 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQN-PNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSK--SIISERLNIY 158 (372)
T ss_pred hCChHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCch--hHHHHHHHHH
Confidence 11 1122244444444222 122233333333333221 112223332221 22233 4788999999
Q ss_pred HHHHHHhCCCCc-ChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000159 153 FQALSEFGAKII-PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2013)
Q Consensus 153 ~~~l~~fG~~~i-~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2013)
..++.+|...-+ .....++.+...+-|..+.+|..|..+..++-..+|++ ..+. +.+.+.++..-
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~---~~~s--------~~~~~~~~~~~--- 224 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN---KELS--------KSVLEDLQRSL--- 224 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh---HHHH--------HHHHHHhcccc---
Confidence 999999866322 34557777777788999999999999999998888864 1111 11111111000
Q ss_pred CCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhcc-CCHHHHHHHHH---
Q 000159 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA-TKWSERKDAVA--- 307 (2013)
Q Consensus 232 ~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s-~kWkeR~eaL~--- 307 (2013)
.+.++. + .+. +.+.+.+.+ +++ +.+.+
T Consensus 225 ~~~~~~---------------------------------~------------~~~-~~L~~mi~~~~~~---~~a~~iW~ 255 (372)
T PF12231_consen 225 ENGKLI---------------------------------Q------------LYC-ERLKEMIKSKDEY---KLAMQIWS 255 (372)
T ss_pred ccccHH---------------------------------H------------HHH-HHHHHHHhCcCCc---chHHHHHH
Confidence 000000 0 000 111111222 111 11222
Q ss_pred HHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc---hhhhHhHHHHHHHHhccCcH---
Q 000159 308 ELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF---SGSSRFLLPVLLEKLKEKKP--- 380 (2013)
Q Consensus 308 ~L~~l~~~pki~~-~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f---~~~~~~llp~LL~klkdkk~--- 380 (2013)
.+..++..+.+.. ..+.+.+....+++++.+..+...|..+=..|...+..+- ....+.++.++...++.++.
T Consensus 256 ~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~ 335 (372)
T PF12231_consen 256 VVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKT 335 (372)
T ss_pred HHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccc
Confidence 2233444444444 3457888999999999999999999999888888665442 35566777777777755432
Q ss_pred --HHHHHHHHHHHHHHHh
Q 000159 381 --TVAESLTQTLQAMHKA 396 (2013)
Q Consensus 381 --~V~~aa~~aL~ai~~~ 396 (2013)
.++..+...+..++-+
T Consensus 336 ~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 336 KEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred cHHHHHHHHHHHhchHHH
Confidence 5677776666665543
No 139
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.16 E-value=23 Score=50.90 Aligned_cols=253 Identities=10% Similarity=0.062 Sum_probs=137.0
Q ss_pred cCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccc---------ccCccccCC
Q 000159 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT---------VRASESTSS 836 (2013)
Q Consensus 766 ~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~---------~r~~~~~~s 836 (2013)
+ |.|.|.+||--..-|+..+.+...|.. +|-...-..+.+.+.++|..+.....|--.|. ++..
T Consensus 58 ~-L~h~d~dvrllvacCvseilRi~aPea-Py~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~----- 130 (1266)
T KOG1525|consen 58 L-LKHKDKDVRLLVACCVSEILRIYAPEA-PYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFC----- 130 (1266)
T ss_pred H-hcCCCcChhHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHH-----
Confidence 5 899999999999999999999888753 12111122344555566665543222211110 0000
Q ss_pred CCCCCCCCCCCcccccccchHHHHh----cCCC---ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhH
Q 000159 837 VSSGGSDGLPREDISGKFTPTLVKS----LESP---DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909 (2013)
Q Consensus 837 ~~~~~~d~lpr~dIs~~L~~~ll~~----l~d~---~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~ 909 (2013)
-..+.....+ +..+++.. ..+. +|-. -++-+..++.+. ..- -.+++..|..-|-..+.
T Consensus 131 ---l~~~l~d~~e----~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~----d~v-~~e~L~~ll~~lv~~~~ 195 (1266)
T KOG1525|consen 131 ---LLMLLEDCQE----LVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEE----DTV-QSELLDVLLENLVKPGR 195 (1266)
T ss_pred ---heeeccchHH----HHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhh----ccc-hHHHHHHHHHHhccCCC
Confidence 0001111111 22222222 2111 2322 222222222221 111 14555555555544445
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCCh
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p 987 (2013)
+....|..+-..+...++...++....++..-+..-......++....+-+-.+..... +-.++|.+..-|.+. +-
T Consensus 196 ~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se--~~ 273 (1266)
T KOG1525|consen 196 DTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSE--QE 273 (1266)
T ss_pred CccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc--hH
Confidence 55556666655666666666555555555444433333444555555555555444432 355667776666655 46
Q ss_pred hhHHHHHHHHHHHhccCCC--CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 988 EGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
..|..+.+.+.+.|..... .....++...++..+.|.+.+||-+..++...+...
T Consensus 274 ~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 274 EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 8999999999988875443 223566777788889999999999988877655433
No 140
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=87.03 E-value=82 Score=43.15 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=72.1
Q ss_pred HHHHHHHHHHh--ChhhHhhhh--hHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000159 916 LITLGAVASAM--GPAVEKSSK--GVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 983 (2013)
Q Consensus 916 l~~l~~La~al--g~~~~~~~~--~llp~ll~~L~D~k--~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~ 983 (2013)
++|+|.|+..- +.++..++. .++|-+.+.|.... ..+.-.+.-.+++++..-. -..+++.+...|..+
T Consensus 509 vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 509 VECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh
Confidence 34444444332 446666664 58888888886443 3455555556665553211 134567777777644
Q ss_pred CCChhhHHHHHHHHHHHhccCCCCCCh---hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000159 984 KLGAEGRKDLFDWLSKQLTGLSGFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 984 k~~p~~R~~~l~~L~~~l~~~~~~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~ 1043 (2013)
.-+-+.=..++-.+-+.+.+-.+-..+ .+....++..+.|+|++||+.+..||..++.+=
T Consensus 589 qeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 589 QEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred CchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 222222233333333333322111111 334445889999999999999999999887654
No 141
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.66 E-value=1.4e+02 Score=40.54 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=56.5
Q ss_pred HHHHhhhcChhhhHHHHHHHHHHHhhh----ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHH
Q 000159 687 LGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLID 761 (2013)
Q Consensus 687 ~~LveKlgD~K~r~~a~e~L~~l~e~~----~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~ 761 (2013)
..|++-+-|--....+...|..+..-. .|..-+..++..+ --.|..||.++...|.++. .... ....+.-
T Consensus 432 ~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv-iLEn~ivRaaAv~alaKfg----~~~~~l~~sI~v 506 (865)
T KOG1078|consen 432 EHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV-ILENAIVRAAAVSALAKFG----AQDVVLLPSILV 506 (865)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh-hhhhhhhHHHHHHHHHHHh----cCCCCccccHHH
Confidence 334444444333444444444443321 2333333344332 2467889999998877655 3322 2345777
Q ss_pred HHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 762 FCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 762 ~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
.++.+ +-|++..||+.|.-.+..+-
T Consensus 507 llkRc-~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 507 LLKRC-LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHH-hcCchHHHHHHHHHHHHHhh
Confidence 77776 99999999999998888775
No 142
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=86.53 E-value=1.1e+02 Score=39.55 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC---CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 715 ~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~---l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
|..-+.+++..+ --.|.-||.+++.+|+. ||... +..+.+...++.+ +.|.+.+||+-|.-++..|-
T Consensus 485 P~~yvrhIyNR~-iLEN~ivRsaAv~aLsk----f~ln~~d~~~~~sv~~~lkRc-lnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 485 PGKYVRHIYNRL-ILENNIVRSAAVQALSK----FALNISDVVSPQSVENALKRC-LNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cchHHHHHHHHH-HHhhhHHHHHHHHHHHH----hccCccccccHHHHHHHHHHH-hhcccHHHHHHHHHHHHhhh
Confidence 334444555443 24677889999887755 55432 3346677778886 99999999999998887775
No 143
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=38 Score=41.81 Aligned_cols=182 Identities=12% Similarity=0.168 Sum_probs=113.0
Q ss_pred hccCCHHHHHHHHHHHHHHhc----CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-HhHH
Q 000159 294 VKATKWSERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLL 368 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~----~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~ll 368 (2013)
..+..-.+|.+|++.|..++. +..+.+ ++-+...+. .+++++..|+..|+.+|+..+..--+.=+... ...+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 356778888999999988873 222222 223344444 88899999999999999998864332111110 1256
Q ss_pred HHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChHhHH-----HHHHHHhhc--CChHHHHHHHHHHHHHHHhcChhH-H
Q 000159 369 PVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVV-----EDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAA-V 439 (2013)
Q Consensus 369 p~LL~klk-dkk~~V~~aa~~aL~ai~~~~~~~l~~il-----~~l~~~l~~--Knp~vR~~~l~~L~~~l~~~~~~~-l 439 (2013)
+.|+..+. +....++..+.-|+.+++.+.......++ ..|..++++ .+.+.|.-++.++..+++...... +
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 67777774 45556789999999999988322223332 456677887 668888899999998887654221 1
Q ss_pred HHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 440 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.. .--+...+.....--+-++++++..++-.+......+
T Consensus 249 ~~-~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 249 AS-SLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred HH-HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhc
Confidence 11 0111122233334445677888877777666555433
No 144
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.03 E-value=7.5 Score=55.60 Aligned_cols=201 Identities=11% Similarity=0.068 Sum_probs=136.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
.+++.+.-++-..|..|++.+.+++...+....-..++.....+.+...|-+..|+.++..++..+.+.+++.+.+|++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 56678888899999999999999997432221112245566677788899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--------chhhHHHHHHHHh--cCC------C---------ChhhHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--------LDKMVPYVTTALT--DAK------L---------GAEGRK 991 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--------l~~ll~~l~~~L~--~~k------~---------~p~~R~ 991 (2013)
++|.++-..-|....|..+|.+........-. -..+.+.+.+.+. ++. + ..++-.
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ 204 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVIS 204 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHH
Confidence 99999999999999999998888876553211 0122222222221 100 0 133445
Q ss_pred HHHHHHHHHhccCCCCCC-------hhhhHHH--HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000159 992 DLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (2013)
Q Consensus 992 ~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~ 1057 (2013)
..+..+...+...+...+ .+.+... +.+.+.++++.||.+..+++-.+...+....|....+.+++
T Consensus 205 ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~ 279 (1312)
T KOG0803|consen 205 SSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKP 279 (1312)
T ss_pred HHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhH
Confidence 556566555544433211 2222222 66678999999999999999888776655433333333433
No 145
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.88 E-value=3.8 Score=52.60 Aligned_cols=110 Identities=25% Similarity=0.411 Sum_probs=83.1
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhH
Q 000159 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (2013)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~l 937 (2013)
..+.+.||-.=.+ |.++|+. . ..+ ..|.+.+|++|++..|..|+..||.+|..+++.+|..|... -+.|
T Consensus 12 ~~l~~pDWa~Nle----IcD~IN~--~--~~~-~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLE----ICDLINS--T--EGG-PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHH----HHHHHhc--C--ccC-cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3467779964433 5555531 1 112 36999999999999999999999999999999999999843 3568
Q ss_pred HHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc-hhhHHHHHH
Q 000159 938 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL-DKMVPYVTT 978 (2013)
Q Consensus 938 lp~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~gl-~~ll~~l~~ 978 (2013)
+.-++...+.+ ...||+-+...|++|....+- +.-++.+..
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~ 126 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQ 126 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHH
Confidence 89998888876 456999999999999988753 554454433
No 146
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.83 E-value=24 Score=47.46 Aligned_cols=192 Identities=16% Similarity=0.078 Sum_probs=122.6
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHH---hCCCCCChhhHHHHHHhcCCCCC-cHhHHHHHHHHHHHHHHhhChhH
Q 000159 719 FERLYKIMKDHKNPKVLSEGILWMVSAVED---FGVSHLKLKDLIDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDI 794 (2013)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~---fG~~~l~~k~li~~l~~~gL~~~-n~~VR~aA~~ll~~Ly~~~G~~l 794 (2013)
+.+|+.++.....|-.+.+++..|++.+-- -....++++.+++.+..+ |.|. |.++-..|..++..|+....++.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~L-L~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVAL-LSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHhhccchh
Confidence 344555554445777888888888888742 223357889999999988 8886 78999999999988876554432
Q ss_pred Hhhh-hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCC-hHHHHH
Q 000159 795 KGFL-ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPD-WKVRLE 872 (2013)
Q Consensus 795 ~~~L-~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~-Wk~R~e 872 (2013)
.--. .+..|.++..|. --. -.+-..
T Consensus 248 a~vV~~~aIPvl~~kL~-----------------------------------------------------~IeyiDvAEQ 274 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLL-----------------------------------------------------TIEYIDVAEQ 274 (1051)
T ss_pred heeecccchHHHHHhhh-----------------------------------------------------hhhhhHHHHH
Confidence 2111 112222222111 111 112234
Q ss_pred HHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHH
Q 000159 873 SIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952 (2013)
Q Consensus 873 ale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~V 952 (2013)
+|++|+.|-+..++.|.-. |.|+..|. .|.=-...++..|+.+...+++.+.++-..|+-..+|.+...|......+
T Consensus 275 ~LqALE~iSR~H~~AiL~A--G~l~a~Ls-ylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ 351 (1051)
T KOG0168|consen 275 SLQALEKISRRHPKAILQA--GALSAVLS-YLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKP 351 (1051)
T ss_pred HHHHHHHHHhhccHHHHhc--ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchh
Confidence 6677777666433333221 44444432 11112345677888999999999998877888889999999998777777
Q ss_pred HHHHHHHHHHHHHhc
Q 000159 953 RECTLTVLDAWLAAV 967 (2013)
Q Consensus 953 r~aa~~aL~~i~~~~ 967 (2013)
.+.+.-|+..++...
T Consensus 352 ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 352 IESVCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777778888887765
No 147
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.81 E-value=12 Score=40.58 Aligned_cols=96 Identities=26% Similarity=0.395 Sum_probs=70.8
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (2013)
+.+.+|.- +-.|..+++.. +..-.+.+++|+++|+..|+++...|+.++..+.+.-|..|... ...++..|
T Consensus 18 ~~~~Dw~~----~l~icD~i~~~---~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l 90 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINSS---PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDEL 90 (140)
T ss_dssp SSS--HHH----HHHHHHHHHTS---TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHH
Confidence 45678853 34455555322 23346899999999999999999999999999999999998755 35677777
Q ss_pred HHHhccCcHH----HHHHHHHHHHHHHHh
Q 000159 372 LEKLKEKKPT----VAESLTQTLQAMHKA 396 (2013)
Q Consensus 372 L~klkdkk~~----V~~aa~~aL~ai~~~ 396 (2013)
.+.+..+... |++.+.+.+..|...
T Consensus 91 ~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 91 VKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 7766654432 888888888888765
No 148
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=84.55 E-value=6.3 Score=41.08 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhH--hHHHHHHH----H-h-
Q 000159 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVLLE----K-L- 375 (2013)
Q Consensus 304 eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~--~llp~LL~----k-l- 375 (2013)
..+..|..++... +..+.++++.|.++|.+.|..++..|+.+|..+.+.-+..|..++. .++-.++. . .
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4566666665422 3457899999999999999999999999999999999998876643 22223321 1 1
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000159 376 KEKKPTVAESLTQTLQAMH 394 (2013)
Q Consensus 376 kdkk~~V~~aa~~aL~ai~ 394 (2013)
++....||+.+...+..|.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2345677877777776653
No 149
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=84.43 E-value=1.6e+02 Score=39.22 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=81.6
Q ss_pred hhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhc-C-ChHHHHHHHHHHHHHHH
Q 000159 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKN-K-VPLVRSLTLNWVTFCIE 432 (2013)
Q Consensus 357 ~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~--~~~~l~~il~~l~~~l~~-K-np~vR~~~l~~L~~~l~ 432 (2013)
...|++....++|++|.++..+...||..+.+.+..+..- +...+.-=++.|+...++ . ++.+|..++-|+...+.
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 3468888999999999999999999999999999887655 112222224566666654 3 59999999999999999
Q ss_pred hcChhHHHHhhhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhC
Q 000159 433 TSSKAAVLKVHKDYVPICMECLNDGT---PEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~k~l~Ds~---~~VR~aA~~al~~l~~~~G 477 (2013)
+.+...- ..++|.+++++.... .+........+..++++..
T Consensus 94 Rl~~~e~----~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLP 137 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCC
Confidence 8876543 567888888886332 2333334444444444443
No 150
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.34 E-value=16 Score=39.19 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=65.4
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 000159 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~D---s~~~VR~aA~~al~~l~ 473 (2013)
..+..+.+..|..-++++||.+...++..|..|+.+++........ +.++..+.+.+.. .+++||..+.+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566778888888899999999999999999999999875322222 3566667777765 58899999999999999
Q ss_pred HHhCch
Q 000159 474 KSVGMR 479 (2013)
Q Consensus 474 ~~~Ge~ 479 (2013)
..++..
T Consensus 112 ~~f~~~ 117 (133)
T cd03561 112 ESFGGH 117 (133)
T ss_pred HHhcCC
Confidence 988863
No 151
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=83.90 E-value=1.1e+02 Score=40.64 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=82.4
Q ss_pred ChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCCCChhhHHHHHHHHHHHhc
Q 000159 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2013)
Q Consensus 927 g~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--~~ll~--~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2013)
...+++.+..++|+++.+|+.....||..+++.|..+-..+.- .--+| .+....++++.++.+|...+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999999888753 22344 5666666654458899999999988777
Q ss_pred cCCCCCChhhhHHHHHhhcCCCC---hHHHHHHHHHHHHHHHHc
Q 000159 1003 GLSGFPDAAHLLKPASIAMTDKS---SDVRKAAEACIVEILRAG 1043 (2013)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~---~dVR~aA~~~L~~l~~~~ 1043 (2013)
..+.. +-.++++.++.++.... .++.......+..+.+..
T Consensus 94 Rl~~~-e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDDE-ERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCHH-HHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 66432 34566777888886443 333333333444444443
No 152
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=83.89 E-value=30 Score=44.71 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=104.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch-hHHHHHHHHH---HHHHHHHHh----Chh
Q 000159 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLI---TLGAVASAM----GPA 929 (2013)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~---~l~~La~al----g~~ 929 (2013)
+.+.+-+.+-..|.+||+.|+. ...+++|++.|...+.+. ..+|++.-+. .+-.++.++ --.
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3445666889999999888862 122578888888877654 2333332222 222333333 223
Q ss_pred hHhhhhhHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCCCChhhHHHH
Q 000159 930 VEKSSKGVLSDILKCLGD----------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAKLGAEGRKDL 993 (2013)
Q Consensus 930 ~~~~~~~llp~ll~~L~D----------~k~~Vr~aa~~aL~~i~~~~g--l----~~ll~~l~~~L~~~k~~p~~R~~~ 993 (2013)
+++|+..++|.++.|+-. +.=.+|+-|...+..++...+ + .+++..+..+|.+.+.......++
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 789999999999999864 334599999999999998876 2 345555666666553345556666
Q ss_pred HHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChH---HHHHHHHHHHHHHHHcCh
Q 000159 994 FDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSD---VRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 994 l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~d---VR~aA~~~L~~l~~~~G~ 1045 (2013)
+..|.+.-...-. .+.+.....-+...+.+.+.. ....|..+...|..+...
T Consensus 362 i~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 362 IAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 6666543221111 122222222233334433332 255666666666666554
No 153
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=83.65 E-value=36 Score=51.00 Aligned_cols=183 Identities=13% Similarity=0.167 Sum_probs=122.6
Q ss_pred CCHHHHHHHHHHHHHHhc----CCCCCCCCh-HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000159 297 TKWSERKDAVAELTKLAS----TKRIAPGDF-TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2013)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~----~pki~~~~~-~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2013)
.+=..+.-|++.|++++- ...+..-.+ .++++-|..++. ..+..|....++|+..|...-+..+..-++.++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 355578888888887662 222222222 378888888777 66778999999999999988888888889999998
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--cCC------ChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcC------
Q 000159 371 LLEKLKEKKPTVAESLTQTLQAMHKA--GCL------NLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSS------ 435 (2013)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~ai~~~--~~~------~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~------ 435 (2013)
+--.++++.+.+++.+.+++..|+.. .+. .+.+++..+....+++ +..+-..++.+|..|.....
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~ 1308 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS 1308 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc
Confidence 88888999999999999999988765 111 1223344443333333 35566667777765522110
Q ss_pred -----------------------------hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 436 -----------------------------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 436 -----------------------------~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
......+.=.++-.+.++..|..++||..|.+.|-.+....|..
T Consensus 1309 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1309 SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 00000112223344455678999999999999998888888863
No 154
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.17 E-value=19 Score=38.94 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=73.5
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (2013)
+.+.+|.- +.++..+++.. +..-.+.+++|+++|+..|.+|...|+.++..+.+.-|..|... .+.++..|
T Consensus 14 l~~~dw~~----ileicD~In~~---~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 14 NREEDWEA----IQAFCEQINKE---PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 46788864 44455544321 22345789999999999999999999999999999999999755 35778888
Q ss_pred HHHhcc------CcHHHHHHHHHHHHHHHHh
Q 000159 372 LEKLKE------KKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 372 L~klkd------kk~~V~~aa~~aL~ai~~~ 396 (2013)
++.+.. ....|++-+...+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 887753 4578999998888888764
No 155
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.47 E-value=7.4 Score=48.33 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=95.5
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhh-Hhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV-EKSS 934 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~-~~~~ 934 (2013)
.+++.++.-.|-++|++|+..+.+++.. +..+.-..+.+++..+..++.|-...|+....+++..+...+++.- .+++
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4788899999999999999999999974 3333333357888888999999999999999999999888777664 7888
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000159 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
..+++.+...+...-+.||.-+...+.-++..++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 8999999999999999999999999998888886
No 156
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=82.41 E-value=8.5 Score=42.85 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=68.1
Q ss_pred hhhHhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHH
Q 000159 362 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk------------------~~V~~aa~~aL~ai~~~--~~~~l~~il~~l~~~l~~Knp~vR~ 421 (2013)
++...++|.++..++-++ -.+|.++.+|+.+++.. +...+..+++.+..|+.+ ...+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 456677777776665544 35999999999999987 234577889999999999 999999
Q ss_pred HHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000159 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (2013)
Q Consensus 422 ~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 454 (2013)
-|...|.++....+. .+...++.+++.+.+.|
T Consensus 84 L~~~~l~kl~~~~p~-~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPE-EVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHS-HH-HHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHh
Confidence 999999998776544 44455788888888777
No 157
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=82.17 E-value=18 Score=43.26 Aligned_cols=170 Identities=13% Similarity=0.124 Sum_probs=106.3
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHh
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pki~--~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 366 (2013)
+.+.+.+.+-+.|..|+..|..+.....-. -..| +...+...+. ..|+.+...++++|..|. .-.++...+..
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~ 134 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLAN 134 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHh
Confidence 334467777788999999998876321110 0123 3334444444 568888888999998885 33444555667
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-----HHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChh---
Q 000159 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-----VVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKA--- 437 (2013)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~-----il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~~--- 437 (2013)
.+|.++..+...+..++..+..+|..+..+ ..-..+ ++..+..-++.+ +..+-..++.|+.++-..+.+.
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~ 213 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV 213 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce
Confidence 788888888887888888777777777654 111111 223344334433 4567778888888765543221
Q ss_pred ---------HHH---HhhhhHHHHHHHHhcCCCHHHHHH
Q 000159 438 ---------AVL---KVHKDYVPICMECLNDGTPEVRDA 464 (2013)
Q Consensus 438 ---------~l~---~~l~~l~p~l~k~l~Ds~~~VR~a 464 (2013)
.+. .-.+.+...+.....++|++||+.
T Consensus 214 ~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 214 FVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred eccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 111 223567778888889999999874
No 158
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.15 E-value=17 Score=41.50 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=82.8
Q ss_pred hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH--
Q 000159 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-- 440 (2013)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~-- 440 (2013)
-+..+++.+++.+-.++..||..+...+..+...|-+++..++|.|++-..+.++.+|..+...+....++++.-...
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356788899999999999999999999999998877888999999998888999999999999999988887542221
Q ss_pred -HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000159 441 -KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 441 -~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
+.++.....-..+-.|.....+......+..++..++
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 2222222222333345444333335555666666655
No 159
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.01 E-value=2.1e+02 Score=38.91 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhhhcChh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhC---
Q 000159 681 CVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMK-DHKNPKVLSEGILWMVSAVEDFG--- 750 (2013)
Q Consensus 681 ~~~~il~~LveKlgD~K---~r~~a~e~L~~l~e~~~~~~V---l~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG--- 750 (2013)
.+...|+.|+|++-... -|..|...|.+++..+..... +..++..+. +-.+|.....+|..+..++..-.
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 46667788888877653 366777777777766543221 111112111 12355555555555555543210
Q ss_pred ----CC-C-----------CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 751 ----VS-H-----------LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 751 ----~~-~-----------l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
.. . +.-+..|..+... ++..|=.||..|++++..+-.+-|..++..+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~-~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS-LEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHH-HHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 00 0 1113456666666 8888999999999999999998887776554
No 160
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.98 E-value=22 Score=45.75 Aligned_cols=196 Identities=17% Similarity=0.131 Sum_probs=123.7
Q ss_pred hhhhccCCHHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH
Q 000159 291 WEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (2013)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~-pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (2013)
....++++-+.|+..+.-|+-+.+. ..|...-|..|...|.+++-|-.+.|+.+|..|+..+-. +.-+=+.....++-
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe-~~~neen~~~n~l~ 175 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE-MELNEENRIVNLLK 175 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-ccCChHHHHHHHHH
Confidence 3456889999999999988888754 345555677888888888889999999999999988763 33332344444444
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2013)
.++. -|+...||.++ |..+... ..+. |.|++-..+-+...|.. +-.+|+...+.......-|.+. .
T Consensus 176 ~~vq--nDPS~EVRr~a---llni~vd-nsT~----p~IlERarDv~~anRr~---vY~r~Lp~iGd~~~lsi~kri~-l 241 (885)
T COG5218 176 DIVQ--NDPSDEVRRLA---LLNISVD-NSTY----PCILERARDVSGANRRM---VYERCLPRIGDLKSLSIDKRIL-L 241 (885)
T ss_pred HHHh--cCcHHHHHHHH---HHHeeeC-CCcc----hhHHHHhhhhhHHHHHH---HHHHHhhhhcchhhccccceeh-h
Confidence 4433 46777787654 3322211 1223 33444334444444443 3356666554322222223333 7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHh
Q 000159 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
+..+++|..-.||.|+..++..-...--+-.+-.+++.||-.+++-....++
T Consensus 242 ~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 242 MEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 7889999999999999999876655444444667888888776664444443
No 161
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.96 E-value=27 Score=46.02 Aligned_cols=126 Identities=15% Similarity=0.205 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh
Q 000159 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (2013)
Q Consensus 324 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~ 403 (2013)
.+.+.++...+.|..+.|+..|++-|-.+++.-. .++..+.-.|...|..-.+..++++..+|..++.. ....
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d~k~ 130 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---DPKG 130 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---CcHH
Confidence 4678888899999999999999999999887633 35666777777778788888899999999999986 3334
Q ss_pred HHHHHHHHhh---cCChHHHHHHHHHHHHHHHhcChhHHH--H-hhhhHHHHHHHHhcC
Q 000159 404 VVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVL--K-VHKDYVPICMECLND 456 (2013)
Q Consensus 404 il~~l~~~l~---~Knp~vR~~~l~~L~~~l~~~~~~~l~--~-~l~~l~p~l~k~l~D 456 (2013)
.+..|+..+. +....+|..++.||..-+.......+. + .-.-++..+.+.|.|
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 4444443333 556789999999998777655443332 1 224466778888888
No 162
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=22 Score=51.09 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=136.3
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHh
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~--~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 366 (2013)
...+++.-++=+.|..|+.+|..+++...... +-+......+.+.+.|-+..|+....+++..+..++++...||.+.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 34455666777788999999999885332221 2366677788888889999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CC-ChHhHHHHH----------------HHHhhcCChHHHH
Q 000159 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CL-NLVDVVEDV----------------KTSVKNKVPLVRS 421 (2013)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~ai~~~~--------~~-~l~~il~~l----------------~~~l~~Knp~vR~ 421 (2013)
++|..+-..-|.-..|..+|.+.+...+.-. |. .+-.++.++ .+.++.|-+++..
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ 204 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVIS 204 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHH
Confidence 9999999988988889988888887665420 10 011111111 1234567788888
Q ss_pred HHHHHHHHHHHhcChh-HHH---Hhhhh--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 422 LTLNWVTFCIETSSKA-AVL---KVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 422 ~~l~~L~~~l~~~~~~-~l~---~~l~~--l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.++..+...+...... .+. ...+. -...+-+.+.+..|.+|.+..+++-.+.+.+-..
T Consensus 205 ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 205 SSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 8888888888544321 111 11122 2345678889999999999999998887665544
No 163
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.80 E-value=18 Score=44.01 Aligned_cols=138 Identities=13% Similarity=0.203 Sum_probs=105.8
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc----ch--hhhHhHHHHHHHHhc--------cCcHHHHHHH
Q 000159 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESL 386 (2013)
Q Consensus 321 ~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~----f~--~~~~~llp~LL~klk--------dkk~~V~~aa 386 (2013)
..+.-+++.+...+.|....+...+|+|+..|...+... |. .+...+..++...+- +....+...+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 346678889999999999999999999999999876533 33 347777777887777 7778889999
Q ss_pred HHHHHHHHHh----c----CCChHhHHH-HHHHHhhc--C--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000159 387 TQTLQAMHKA----G----CLNLVDVVE-DVKTSVKN--K--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (2013)
Q Consensus 387 ~~aL~ai~~~----~----~~~l~~il~-~l~~~l~~--K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (2013)
..|+..++.. + ...+.+++- .|+..+.+ + .+.++...++.+..++...+.. ..++++.+++.+...
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 9999998663 0 122445553 36666652 3 5899999999999999886654 347889999999999
Q ss_pred hcCCCH
Q 000159 454 LNDGTP 459 (2013)
Q Consensus 454 l~Ds~~ 459 (2013)
+.+.+.
T Consensus 274 l~npf~ 279 (282)
T PF10521_consen 274 LENPFG 279 (282)
T ss_pred hcCCCc
Confidence 988753
No 164
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.37 E-value=24 Score=43.97 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=82.4
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhH
Q 000159 330 LKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDV 404 (2013)
Q Consensus 330 L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~-----~~l~~i 404 (2013)
|...++.-|.+|+..|+.-|..+-..--.....+...+++.+.+.+-|....||++...+++.++-..| ....-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 334556677777777777777766552222334666788888888999999999999999998765422 122446
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000159 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (2013)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (2013)
++.+..+|.|-.|.+|..++.||..++..+++..
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 7888899999999999999999999999987653
No 165
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=81.08 E-value=6.4 Score=39.39 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=64.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHH
Q 000159 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (2013)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~ 484 (2013)
++.++.-+.+..+.+|...+..|..++..... -....+.++..+...+.|.++=|=-+|.++|..++...+++.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~--~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSE--PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 44455566788899999999999999987661 1123578889999999999999999999999999999998766555
Q ss_pred Hh
Q 000159 485 IE 486 (2013)
Q Consensus 485 l~ 486 (2013)
++
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 44
No 166
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.03 E-value=4.9 Score=45.85 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=59.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhC
Q 000159 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (2013)
Q Consensus 129 v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (2013)
-+..+++.+.+.+++++..++..+..+++ +|. ++|+..+|.+..+..++|+.||+.|..+..+++.--+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGL--vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-QGL--VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCC--CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 34566777889999999999999988877 687 6899999999999999999999999999998885554
No 167
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.70 E-value=25 Score=45.28 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=108.1
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhh---hc----chhhhH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLR---TH----FSGSSR 365 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~---~~----f~~~~~ 365 (2013)
+.+.+=..|.+||+.|+. ...++.+++-+...|. ....+|+..-+..|-.|-+..+ ++ .++|+.
T Consensus 216 ~~g~~~~~r~eAL~sL~T--------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh 287 (576)
T KOG2549|consen 216 CTGSDEPLRQEALQSLET--------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH 287 (576)
T ss_pred HhcCCHHHHHHHHHhhcc--------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 456888899999998743 2346778888887777 3344455444444444443333 22 579999
Q ss_pred hHHHHHHHHhccCcHH----------HHHHHHHHHHHHHHhcCCC---h-HhHHHHHHHHhh-c-CChHHHHHHHHHHHH
Q 000159 366 FLLPVLLEKLKEKKPT----------VAESLTQTLQAMHKAGCLN---L-VDVVEDVKTSVK-N-KVPLVRSLTLNWVTF 429 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~----------V~~aa~~aL~ai~~~~~~~---l-~~il~~l~~~l~-~-Knp~vR~~~l~~L~~ 429 (2013)
.++|.++.++-.++-. +|+=+...+..++.+..+. + ..|+..+..++. + +.+...-+++.-|..
T Consensus 288 ~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 288 QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 9999999998776542 7888888888888772212 2 345555555554 3 567888888877766
Q ss_pred HHHhcChhHHHHhhhhHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHhCc
Q 000159 430 CIETSSKAAVLKVHKDYVPICMECLNDGTP---EVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 430 ~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~---~VR~aA~~al~~l~~~~Ge 478 (2013)
+-...-...+.+.++.+.--+...+++... -.+..|..+.+.|.++...
T Consensus 368 lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 368 LGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred hhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 433221222223345554455444543333 2366677777776666543
No 168
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.43 E-value=8.9 Score=40.38 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=50.3
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh---HHHHHHHHh--------cCCCHHHHHHHHH
Q 000159 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD---YVPICMECL--------NDGTPEVRDAAFS 467 (2013)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~---l~p~l~k~l--------~Ds~~~VR~aA~~ 467 (2013)
..+.++++.|..-|++++|.||.-+|..|..++..-+.. +...+.. ++..+...- +|....||++|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 345677888888888888999888999888887765433 3322222 333333322 4556789999999
Q ss_pred HHHHHH
Q 000159 468 VLAAIA 473 (2013)
Q Consensus 468 al~~l~ 473 (2013)
++..+.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998775
No 169
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.33 E-value=9.6 Score=49.71 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=99.3
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHhChhh-----HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh----cC---
Q 000159 901 RGRLYDSNKNLVMATLITLGAVASAMGPAV-----EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA----VH--- 968 (2013)
Q Consensus 901 ~~rL~DsN~~V~~~Al~~l~~La~alg~~~-----~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~----~g--- 968 (2013)
-.-|+-.|.+|+..|+.++=.+..--|++. +..+..=+-.+.+.|.|.-+.||..|+..+..+... .+
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 344577899999999998888877777764 344444556778899999999999998877665543 22
Q ss_pred chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000159 969 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 969 l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+..++..|.+-+.... ..++|..+.+.|...+..-...+-+..+++.+--.|.|.+..||-++...|..+-.
T Consensus 260 ~~~ll~kI~d~~a~dt-~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDT-SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHhhhcc-chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 2344445555555432 36899999998887665322223345555557778999999999999998876643
No 170
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=80.29 E-value=14 Score=40.74 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=61.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhcc--------cchh---HHH------HHHHHH
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL--------YDSN---KNL------VMATLI 917 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~--~~I~~~~~~eL~~~L~~rL--------~DsN---~~V------~~~Al~ 917 (2013)
+.+..+.+.+=++|..|++.|..++.... ..+....|+.++.+|...+ ...+ ... ...+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 56788999999999999999999997432 4555556788888886654 1111 121 233444
Q ss_pred HHHHHHHHhChhhH-hhhhhHHHHHHHHhCCCc
Q 000159 918 TLGAVASAMGPAVE-KSSKGVLSDILKCLGDNK 949 (2013)
Q Consensus 918 ~l~~La~alg~~~~-~~~~~llp~ll~~L~D~k 949 (2013)
++..++...-+.|. +.+..++..|++.|.+..
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 44444444434443 456778888888887777
No 171
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.27 E-value=14 Score=49.57 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=121.7
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHh--ccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~--a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
.+.+..+.|+.--+|-.|+..+..+++. ....+. -..++.++...|.|-+..|...|++.+..++.. |
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~---~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ---GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh---HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------c
Confidence 4567778888888999999999999982 111222 245788889999999999999998877777755 5
Q ss_pred hhhHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc
Q 000159 934 SKGVLSDILKCLGDNKK----HMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (2013)
Q Consensus 934 ~~~llp~ll~~L~D~k~----~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~ 1003 (2013)
-+.++|.+.+-+...|+ ..|--+-+++..+++..| .+.++..+...+.++ .-.-|...+..+..+...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHH
Confidence 56788888885544332 234444466777777766 233444444444433 123487777776665543
Q ss_pred CCC--CCChhhhHHHHHhhc-CCCChHHHHHHHHHHHHHHHHcChhH
Q 000159 1004 LSG--FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1047 (2013)
Q Consensus 1004 ~~~--~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~L~~l~~~~G~~~ 1047 (2013)
... +..+.+.+..++... .|...-||.+|...+..+....|++.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 321 223344445555543 79999999999999999999999764
No 172
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.07 E-value=9.5 Score=40.15 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh---C---
Q 000159 873 SIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---G--- 946 (2013)
Q Consensus 873 ale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L---~--- 946 (2013)
.+++|.++..+ .+..+.+++..|.+||+|.+..|...+|++|..++..-...|...++.-...|-.+. +
T Consensus 21 ~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred HHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 34455555432 233468999999999999999999999999999998888888776665544333322 2
Q ss_pred -----CCcHHHHHHHHHHHHHHHH
Q 000159 947 -----DNKKHMRECTLTVLDAWLA 965 (2013)
Q Consensus 947 -----D~k~~Vr~aa~~aL~~i~~ 965 (2013)
+....||.+|.+++..+..
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 2345699999998887764
No 173
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=79.97 E-value=20 Score=44.91 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=76.5
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch-------hHHHHHHHHHHHHHHHHHhChhhHh
Q 000159 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-------NKNLVMATLITLGAVASAMGPAVEK 932 (2013)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-------N~~V~~~Al~~l~~La~alg~~~~~ 932 (2013)
+.+-+.+-..|.+|++.|+. .. . +.+|++.|...+.+. |..+....++++..|...-.-.+++
T Consensus 185 ~a~~~~~~~~r~~aL~sL~t-----D~----g-l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 185 EALVGSNEEKRREALQSLRT-----DP----G-LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHhCCCHHHHHHHHHHhcc-----CC----C-chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 33455677778888777652 11 2 366666666655433 3333333444444444333445789
Q ss_pred hhhhHHHHHHHHhC----------CCcHHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCCCChhhHHHHHHH
Q 000159 933 SSKGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAKLGAEGRKDLFDW 996 (2013)
Q Consensus 933 ~~~~llp~ll~~L~----------D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~----~l~~~L~~~k~~p~~R~~~l~~ 996 (2013)
|+..|+|.++.|+- +..-.+|+-|...|..+++.++ ...+.+ .+..+|.+++.+.....+++..
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G 334 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG 334 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence 99999999999883 2233699999999999999876 233444 3444444443222234444444
Q ss_pred HH
Q 000159 997 LS 998 (2013)
Q Consensus 997 L~ 998 (2013)
|.
T Consensus 335 L~ 336 (343)
T cd08050 335 LS 336 (343)
T ss_pred HH
Confidence 43
No 174
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.73 E-value=2.7e+02 Score=38.80 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc
Q 000159 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 907 sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
+|.--+...+.-|+.++..+|..|.+.+-..+-+++.++++..+.|+..|..|+-+++..|++
T Consensus 560 Snv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y 622 (1014)
T KOG4524|consen 560 SNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNY 622 (1014)
T ss_pred cchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCC
Confidence 444444667888999999999999999999999999999999999999999999999999985
No 175
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=79.37 E-value=11 Score=42.17 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=72.1
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhc-C-CCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhc------
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAS-T-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH------ 359 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~-~-pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~------ 359 (2013)
.....+.++++..|-.|+.-+..++. + +.+....|...++.|.+.++ .....+...|+.++..|...++..
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 34455688999999999998888774 2 55555678899999999998 566778888899999988765421
Q ss_pred -chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000159 360 -FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 360 -f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~ 396 (2013)
..|.+..+++.++..+.+ ..+.+.+..+|..++.+
T Consensus 109 i~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 109 IATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred HhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 235555555555555544 33444444555554443
No 176
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.89 E-value=11 Score=37.85 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=65.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
..+..+.|..-=+|-.|+..+.+++.... ........++..+...|+|....|...|++.+..|+...+ +.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-------~~ 77 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-------DE 77 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-------HH
Confidence 45567788887899999999999998532 2223346788889999999999999999999999996553 45
Q ss_pred HHHHHHHHhCCCc
Q 000159 937 VLSDILKCLGDNK 949 (2013)
Q Consensus 937 llp~ll~~L~D~k 949 (2013)
+++.+++.+.|.+
T Consensus 78 vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 78 VLPILLDEYADPS 90 (92)
T ss_pred HHHHHHHHHhCcc
Confidence 6778887777654
No 177
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.79 E-value=14 Score=41.06 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=52.4
Q ss_pred HHHHHhcccchh-HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000159 897 FGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (2013)
Q Consensus 897 ~~~L~~rL~DsN-~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~ 966 (2013)
+.+|...|+|.. ..-...+++++-.|.+.+|..+-+|+..++|.++..+.......|+....-|..++.-
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 455666666653 3333456667777778899999999999999999999887778888887777776654
No 178
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.77 E-value=9.1 Score=43.29 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=89.7
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHH---hChhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA---MGPAV 930 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~a---lg~~~ 930 (2013)
+.+.|.+++.+-+.--|.-|-+.+.+++.....+|.|-. .+|+..|+..|.-.|..|...+|++|+.|... .|..+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 345788999999888888898999998886667888875 99999999999999999999999999998854 46888
Q ss_pred HhhhhhHHHHHHHHhC------------CCcHHHHHHHHHHHHHHHHhcCchhh
Q 000159 931 EKSSKGVLSDILKCLG------------DNKKHMRECTLTVLDAWLAAVHLDKM 972 (2013)
Q Consensus 931 ~~~~~~llp~ll~~L~------------D~k~~Vr~aa~~aL~~i~~~~gl~~l 972 (2013)
-+|.++++|.+- .++ |++-.+-+-...+|..+-.+-|...+
T Consensus 194 VPfYRQlLp~~n-~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAf 246 (262)
T KOG3961|consen 194 VPFYRQLLPVLN-TFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAF 246 (262)
T ss_pred hhHHHHhhhhhh-hhcccccccccccCccccccHHHHHHHHHHHHHHcCCccce
Confidence 899999998663 222 23445555566666665555554433
No 179
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=78.58 E-value=21 Score=45.16 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=40.7
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000159 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2013)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al 469 (2013)
++.|-+|..++.++..+-...++.. +..++|.+..+|.+++.-|+..|+-|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 7889999999999998665555443 477999999999999999999998774
No 180
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.51 E-value=8.1 Score=49.07 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=65.1
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000159 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (2013)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdk-k~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l 412 (2013)
+.|.|--|++.|..+|+.++-.= +..++..++.+.++ +..||-...-+|.-.+.. ++....++.+-.-+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~ 630 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALM 630 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHh
Confidence 44666666666655555543211 23455556666543 556666666666555443 34444444444444
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHH
Q 000159 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (2013)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 460 (2013)
.+-|--||+.++..+..++-.+.+. +.+..+.|...+-..+.|.+.+
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhHh
Confidence 5666777777777776666655543 4444566666666666666654
No 181
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.47 E-value=46 Score=37.18 Aligned_cols=115 Identities=12% Similarity=0.146 Sum_probs=82.2
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh-hhcchhhhHhHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHh--
Q 000159 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKA-- 396 (2013)
Q Consensus 321 ~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~LL~klkd-kk~~V~~aa~~aL~ai~~~-- 396 (2013)
.+.+.++..+...+.+.+..-+..|+..++.++..- ..-|..+....+..++..+.. ..+.+.+++..++..++..
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345667777777778877888889999999988876 455767888888888888865 4557889999999999987
Q ss_pred cC---------CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 397 GC---------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 397 ~~---------~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
+- ..+..+++.++..++. ......++..|..++..++..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 11 1123333333333332 677788999999999887653
No 182
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.05 E-value=25 Score=48.99 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=91.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhc
Q 000159 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN 414 (2013)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~ 414 (2013)
-+|+.+...|--+++.+.- +.. .|...-+|.++.-+ |.+.+.||..+..++.-+.-....-++..-+.+..-|.+
T Consensus 934 ~sdp~Lq~AAtLaL~klM~-iSa---~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D 1009 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMC-ISA---EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRD 1009 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhh-hhH---HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcC
Confidence 3455566666555555432 222 34444555555555 467888998888888765532123456777888999999
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
-++.||..|+..|..++-+- ..+ +|-.++.+..|+.|.++++|+-|..-|-.+...
T Consensus 1010 ~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 99999999999999877542 112 366778899999999999999999777666544
No 183
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.05 E-value=26 Score=37.65 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhcCCCH--HHHHHHHHHHHHHHH
Q 000159 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAK 474 (2013)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~Ds~~--~VR~aA~~al~~l~~ 474 (2013)
..+..+.+..|..-++++||.+...++..|..|+.+++...-.. .-+.++..+.+.+.++.. .||+...+.+.....
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 34567778888888899999999999999999999988653222 135677788888776544 499999999999998
Q ss_pred HhCch
Q 000159 475 SVGMR 479 (2013)
Q Consensus 475 ~~Ge~ 479 (2013)
.+...
T Consensus 112 ~f~~~ 116 (133)
T smart00288 112 AFKND 116 (133)
T ss_pred HHcCC
Confidence 88653
No 184
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.94 E-value=15 Score=46.89 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHHhc---CCCCCCC--------ChH--HHHH-HHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh
Q 000159 297 TKWSERKDAVAELTKLAS---TKRIAPG--------DFT--EVCR-TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362 (2013)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~---~pki~~~--------~~~--~l~~-~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~ 362 (2013)
..|+ .||++.++..+. +.+|..+ .|+ ++.. .+.+.+.|..+.++..+.-.++.---|-++
T Consensus 476 gt~s--~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn---- 549 (926)
T COG5116 476 GTWS--VEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGN---- 549 (926)
T ss_pred cCCC--HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCc----
Confidence 4565 577777776652 3333211 221 2322 344455577777776665554433333332
Q ss_pred hhHhHHHHHHHH-hccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh-hcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000159 363 SSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2013)
Q Consensus 363 ~~~~llp~LL~k-lkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l-~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2013)
..++..+|.- ..|.+..||.|+.-||..++-. .. +.+....+-| ++-|+-||.+++-.|..+....+.
T Consensus 550 --~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---D~-~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---- 619 (926)
T COG5116 550 --LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---DR-DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---- 619 (926)
T ss_pred --chhHhhhheeecccCchHHHHHHHHheeeeEec---Cc-chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----
Confidence 2355555555 6899999999998888876522 22 3333344433 588999999999999877665442
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
+..+..+-.++.|++.-||.+|+-+++.+.....+
T Consensus 620 ---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 620 ---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 44556777888999999999999999877655444
No 185
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.92 E-value=8.8 Score=49.42 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=72.3
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHH
Q 000159 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (2013)
Q Consensus 293 ~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~ 370 (2013)
.+.+.+|.--. +|..+++... +.-.+++++|+|+|.+.++.|...|+.+|+.+.+..|..|... -+.|+.-
T Consensus 13 ~l~~pDWa~Nl----eIcD~IN~~~---~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 13 SLAEPDWALNL----EICDLINSTE---GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred cccCccHHHHH----HHHHHHhcCc---cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46778896533 3555553221 2234899999999999999999999999999999999999744 4578888
Q ss_pred HHHHhccC--cHHHHHHHHHHHHHHHHh
Q 000159 371 LLEKLKEK--KPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 371 LL~klkdk--k~~V~~aa~~aL~ai~~~ 396 (2013)
+++.++.+ -..||+-+...|++|...
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 88888776 345777777777777654
No 186
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=77.50 E-value=1.1e+02 Score=38.47 Aligned_cols=201 Identities=15% Similarity=0.102 Sum_probs=107.6
Q ss_pred HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhCh-hHH
Q 000159 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIK 795 (2013)
Q Consensus 717 ~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~-~l~ 795 (2013)
.+++.+.+.+.+--|..+....+..+..-+..++.. -.+.+++++.+ |+.+..+.||..-+.+++.++...+. ...
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~--~~~~~~~~~~k-Gl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE--LPKKVVDAFKK-GLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC--CCHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 345555555544556666666666666655555321 23679999988 69999999999999999998762222 244
Q ss_pred hhhhhccHHHHHHHHHHHhhCCCCCCCCCccc-c-------c--C-cccc-CCCCCCCCCCCCCcccccccchHHHHhc-
Q 000159 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKT-V-------R--A-SEST-SSVSSGGSDGLPREDISGKFTPTLVKSL- 862 (2013)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~-~-------r--~-~~~~-~s~~~~~~d~lpr~dIs~~L~~~ll~~l- 862 (2013)
.+...+-|.+.+.+++-+..-. +.+..+ . . . ..+. .+............+-+-.+.+.++.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~----~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPL----QSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC----CccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 5667777777777776654321 111100 0 0 0 0000 0000000000000011112456777773
Q ss_pred CCC--ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch--hHHHHHHHHHHHHHHHHHhChh
Q 000159 863 ESP--DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPA 929 (2013)
Q Consensus 863 ~d~--~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~ 929 (2013)
++. .|- ++.+..++.+....+.......+..++.-.+..+ ...|+..|+..+..+...-+..
T Consensus 175 ~~~d~~w~-----~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 175 SEEDLCWL-----LRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred CHhHHHHH-----HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 333 364 3344444443222222221134566666677666 7889999999988887665433
No 187
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=77.09 E-value=1.8e+02 Score=38.30 Aligned_cols=132 Identities=11% Similarity=0.188 Sum_probs=99.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhh-----h
Q 000159 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK-----D 728 (2013)
Q Consensus 654 DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~-----~ 728 (2013)
-++......+|+++..++. ++.+...++..++..|+.-.+-..+...+.+++..++........+..++..+. .
T Consensus 188 Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~ 266 (464)
T PF11864_consen 188 TSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQN 266 (464)
T ss_pred cCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccc
Confidence 3445556788888887776 577777888888888887766678888999999999987666778888888872 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCC---CChhh--HHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 729 HKNPKVLSEGILWMVSAVEDFGVSH---LKLKD--LIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 729 ~KnpKv~~~~l~~L~~li~~fG~~~---l~~k~--li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
..++.+..|++..+..++-..|..+ ++... +++-+..+ +...++.|=.....++-.+.
T Consensus 267 ~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 267 KRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHHHHHHHHHHH
Confidence 3578888899999999998775544 33444 88888887 88888776665555555554
No 188
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=76.96 E-value=11 Score=46.10 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=64.8
Q ss_pred hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000159 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
-.+.+.+|.+||+-.+..|+..||.++..++..+|+.|..- .+.|..-|...+.+ ....|+......+..|.+.+.-
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999998753 45677777777774 4456888888888888887654
Q ss_pred hh
Q 000159 970 DK 971 (2013)
Q Consensus 970 ~~ 971 (2013)
+.
T Consensus 123 Dp 124 (462)
T KOG2199|consen 123 DP 124 (462)
T ss_pred Cc
Confidence 43
No 189
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=76.45 E-value=19 Score=37.20 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=57.1
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhcc
Q 000159 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (2013)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld 489 (2013)
.+...-|..++.-+..+++. ....+....+.++..+..+++.. ++|+.|.+|-..|.+.++++.+.++++..-
T Consensus 26 ~~~~~ek~~~l~si~~lI~~-~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKL-GGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF 98 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 35568899999999999883 33445555566666666666665 999999999999999999988988887654
No 190
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=76.21 E-value=2.1e+02 Score=38.55 Aligned_cols=48 Identities=4% Similarity=0.077 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHH
Q 000159 382 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIE 432 (2013)
Q Consensus 382 V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~ 432 (2013)
..+....|+..+... -..+.+.+ |+.+|.+. .++....|+.|+..+..
T Consensus 269 ~~ekvl~aiT~~ae~--~~veRF~p-iv~gl~~~e~~~l~vacmq~INal~t 317 (1102)
T KOG1924|consen 269 GLEKVLEAITTIAEA--KPVERFRP-IVEGLDFLEKQQLQVACMQFINALVT 317 (1102)
T ss_pred HHHHHHHHHHHHHhh--cchhhhhh-HHHHHhccchHHHHHHHHHHHHHhcC
Confidence 334444444444442 23333333 44566643 67777778777766543
No 191
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=75.68 E-value=32 Score=46.89 Aligned_cols=166 Identities=15% Similarity=0.168 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHh--hhcchhhhH--hHHHHHHHHhccCcH
Q 000159 306 VAELTKLASTKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGL--RTHFSGSSR--FLLPVLLEKLKEKKP 380 (2013)
Q Consensus 306 L~~L~~l~~~pki~~~~~~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L--~~~f~~~~~--~llp~LL~klkdkk~ 380 (2013)
++.++.+..++.-....+.+.+.-|.+.+.. .+ -...+.|+|.|++-- .-++...+. .++|.|.+.++....
T Consensus 471 lKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~---ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDS---EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 4556777765422223455566666666662 23 245567777777743 235666664 689999999865432
Q ss_pred --HHHHHHHHHHHHHHHh-cCCC-h--HhHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHH
Q 000159 381 --TVAESLTQTLQAMHKA-GCLN-L--VDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICM 451 (2013)
Q Consensus 381 --~V~~aa~~aL~ai~~~-~~~~-l--~~il~~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~ 451 (2013)
.+.-.+...+.++... .|-. + ..+++.+...|+.|. -..=.+++-.+.+++.+-.. ..+... ..+...+.
T Consensus 548 ~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~yli 626 (708)
T PF05804_consen 548 EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLI 626 (708)
T ss_pred ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHH
Confidence 3443343444444322 1101 1 245677777777655 34444555555555543221 222222 45788999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 452 ECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 452 k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.++.|.+++||..|-.||..++.+
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988866
No 192
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=74.70 E-value=63 Score=42.73 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCCh
Q 000159 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 417 (2013)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp 417 (2013)
+.++-..|.+.|...+ +.|......-+-.+++.+.|....||..+...|-.+++.+...+..+.+.|...|+...+
T Consensus 35 ~~k~K~Laaq~I~kff----k~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFF----KHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHHH----CC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccH
Confidence 3455666666665544 578888999999999999999999999999999988875334568888888889998888
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.-...+=+.|..++...++..+...+..+... ...+..||+.+.+.+..-+.-++..
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHhhCcHH
Confidence 88777777777777777766665444444332 2456789999888876555444443
No 193
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=74.67 E-value=67 Score=41.40 Aligned_cols=203 Identities=13% Similarity=0.065 Sum_probs=125.3
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-hH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (2013)
.+.+.+.+.+=.||.-...-|..+-. .+..-+.-...+...|..-+. ..+...+...+.+++.+.+|....+... ..
T Consensus 137 ~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~ 216 (409)
T PF01603_consen 137 KLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQ 216 (409)
T ss_dssp HHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 34455688999999876666666542 221111111223334444444 5666788999999999999877555433 33
Q ss_pred hHHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000159 366 FLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~-V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2013)
.+...++-.++-+.-. .......|+..++.+...-...++..|+...--.|++=..--++.+..+++..++..+.+...
T Consensus 217 fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~ 296 (409)
T PF01603_consen 217 FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMV 296 (409)
T ss_dssp HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3345555555555433 478888999998887332334566666666666666666677888999999888888888889
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHH
Q 000159 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498 (2013)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e 498 (2013)
.+...+.+|+...+-.|-+.|. ..+.+..+..++..-...-...|-.
T Consensus 297 ~lf~~la~ci~S~h~qVAErAl-------~~w~n~~~~~li~~~~~~i~p~i~~ 343 (409)
T PF01603_consen 297 PLFKRLAKCISSPHFQVAERAL-------YFWNNEYFLSLISQNSRVILPIIFP 343 (409)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHH-------GGGGSHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHH-------HHHCCHHHHHHHHhChHHHHHHHHH
Confidence 9999999999999999966665 3456655555555544433344433
No 194
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=74.55 E-value=11 Score=43.31 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChh
Q 000159 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 988 (2013)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~ 988 (2013)
...-...+.+++.+...+|....+++..++..+-+.-.+..-..|..+..|+++.++..|++.++..+-=-+........
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCc
Confidence 34556778899999999999888888888887777777777889999999999999999998887644322221111234
Q ss_pred hHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000159 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (2013)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (2013)
.|.-++-.|.+.+.+. .-..+.+.+.|+...+
T Consensus 94 ~raWLLPlLr~~i~~~-~L~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA-SLSFFVEEFLPLARRL 125 (198)
T ss_pred ccchhHHHHHHhccCC-ChHHHHHHHHHHHHHH
Confidence 5665666666554322 1123455555655443
No 195
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.46 E-value=24 Score=46.76 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=89.7
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000159 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (2013)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l 408 (2013)
.+++.+.|.++.++..++-.++.--.|-++. .-++.+++. ...|.+..||.+|..+|..++-. .++.+ +.+
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgnn--kair~lLh~---aVsD~nDDVrRaAVialGFVl~~---dp~~~-~s~ 593 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGNN--KAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFR---DPEQL-PST 593 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCch--hhHHHhhcc---cccccchHHHHHHHHHheeeEec---Chhhc-hHH
Confidence 3445556888888887765554433333322 223333332 25689999999999999876532 33333 333
Q ss_pred HHHh-hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 409 KTSV-KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 409 ~~~l-~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
..-| ++-||-||.+++-.|..+...++- +..+..|-.++.|+..-||..|.-+++.++-..-+
T Consensus 594 V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 594 VSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred HHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 3433 589999999999999887665442 44556667777899999999999999988855443
No 196
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.30 E-value=31 Score=45.71 Aligned_cols=161 Identities=17% Similarity=0.137 Sum_probs=111.9
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHH
Q 000159 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2013)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~r-L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (2013)
+.+.|++--.|..|+-.+.---. .... ...+.-|... ++|.|-.|+..|...||-++ |+. +..+
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~------GTgn-nkair~lLh~aVsD~nDDVrRaAVialGFVl------~~d--p~~~ 590 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYV------GTGN-NKAIRRLLHVAVSDVNDDVRRAAVIALGFVL------FRD--PEQL 590 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHh------ccCc-hhhHHHhhcccccccchHHHHHHHHHheeeE------ecC--hhhc
Confidence 45678888889998766642211 1111 2334444443 79999999999988877655 211 3567
Q ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC--CCChhhhHH
Q 000159 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLK 1015 (2013)
Q Consensus 939 p~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--~~~~~~ll~ 1015 (2013)
|.++..|.+ -+++||-.+.-+|+-.+.-+|...-+..+-+...++ +-.+|+.++-.++-.+-+... .+.+..+.+
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 888888876 568899999999999999999888777666666665 468999988887766655443 355667777
Q ss_pred HHHhhcCCCChHHHHHHHHHHH
Q 000159 1016 PASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
-+.+.+.|++.|+-..--.+|.
T Consensus 669 ~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 669 QLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH
Confidence 7888888888876554444443
No 197
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=73.42 E-value=29 Score=42.29 Aligned_cols=159 Identities=11% Similarity=0.155 Sum_probs=105.0
Q ss_pred cCCChHHHH----HHHHHHHH-HhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh----hhh-
Q 000159 21 LHKNWKVRN----EANIDLAA-LCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA----GRY- 90 (2013)
Q Consensus 21 ~~k~WK~R~----~ayeeL~~-~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~----~~~- 90 (2013)
.-+.||.-- ..+..++. .... ..-+..|.-+.+.+..++.|..+.+..+|+.+|..|+++..... .++
T Consensus 85 ~~~~WK~~~~~~~~~l~w~v~~~~~~--~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tG 162 (282)
T PF10521_consen 85 QRQPWKSNPGLASHVLSWIVLSQLDR--PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTG 162 (282)
T ss_pred ccCCcccCCcccHHHHHHHHHhcCCc--chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcC
Confidence 567888754 44444444 1111 11222344456777788999999999999999999999876532 233
Q ss_pred HHHHHHHHHHhhcC---------CChhHHHHHHHHHHHHHhhh-----h-----h-hhHHHHHHHHhh--c--CChhhHH
Q 000159 91 AKEVCDAIAAKCLT---------GRPKTVEKAQAVFMLWVELE-----A-----V-DVFLDVMEKAIK--N--KVAKAVV 146 (2013)
Q Consensus 91 ~~~v~~~LveK~l~---------~k~~~k~~A~~~ll~~~E~~-----~-----~-~~v~~~L~~~~~--~--KnpKv~~ 146 (2013)
..+|+-..+.+|+. .-..+-..+..|++.++... . . +.+-+.++.++. . ++|+++.
T Consensus 163 l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 163 LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRT 242 (282)
T ss_pred hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHH
Confidence 35566555566664 12345566778877775541 1 1 233344666653 2 3799999
Q ss_pred HHHHHHHHHHHHhCCCCc-ChhHHHHhhhhhhcCCC
Q 000159 147 PAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQD 181 (2013)
Q Consensus 147 ~~l~~L~~~l~~fG~~~i-~~k~il~~l~~ll~~~d 181 (2013)
.-++.+..++...|...+ -++.+++.+...+.+++
T Consensus 243 ~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 243 VLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999998644 47888888888887765
No 198
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.24 E-value=25 Score=36.93 Aligned_cols=79 Identities=9% Similarity=0.106 Sum_probs=56.5
Q ss_pred ccCCCCChhhHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHhChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000159 886 KRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDA 962 (2013)
Q Consensus 886 ~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2013)
.++..++ .+++..|...|.. .+..+..-||.-|+.++.... .-...+.. .=..++..+.+.++.||-.|..|+..
T Consensus 35 ~kf~~~~-~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p-~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 35 DKFEENN-FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP-NGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp GGGSSGG-GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G-GGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHcc-cHHHHHHHHHHccCCCcceeehhhcchHHHHHHCh-hHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4666665 7899999999944 477788889999999998873 22333322 23567788888999999999999888
Q ss_pred HHHh
Q 000159 963 WLAA 966 (2013)
Q Consensus 963 i~~~ 966 (2013)
++.+
T Consensus 113 lm~~ 116 (119)
T PF11698_consen 113 LMVN 116 (119)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 199
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.21 E-value=19 Score=37.77 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=47.6
Q ss_pred hHHHHHHHHh-hcCChHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 403 DVVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 403 ~il~~l~~~l-~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.++..|...| ++.++.+-.-++.=|+.++..++... +... -..-..++.+|++.|++||..|..|+..+|..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3455555555 34466676777778888887776431 1111 12345789999999999999999999988753
No 200
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=71.35 E-value=54 Score=35.66 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=62.5
Q ss_pred CCChHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHH-HHHHhcC---CCHHHHHHHHHHHHH
Q 000159 398 CLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPI-CMECLND---GTPEVRDAAFSVLAA 471 (2013)
Q Consensus 398 ~~~l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~-l~k~l~D---s~~~VR~aA~~al~~ 471 (2013)
..+..+.+..|..-++ ++||++-..++..|..|+.+++...... .-+.++.. +.+.+.+ .+..|++...+.+..
T Consensus 33 ~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~ 112 (141)
T cd03565 33 EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQA 112 (141)
T ss_pred CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHH
Confidence 3556677777777777 5899999999999999999998653322 23667776 7777763 456999999999999
Q ss_pred HHHHhCch
Q 000159 472 IAKSVGMR 479 (2013)
Q Consensus 472 l~~~~Ge~ 479 (2013)
....++.+
T Consensus 113 W~~~f~~~ 120 (141)
T cd03565 113 WADAFRGS 120 (141)
T ss_pred HHHHhCCC
Confidence 99888754
No 201
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.65 E-value=7.7e+02 Score=39.70 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=99.8
Q ss_pred CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccc
Q 000159 754 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 833 (2013)
Q Consensus 754 l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~ 833 (2013)
+|..-+++.+..+ +.+.|..++.++..++..++...-.. |.+- .+
T Consensus 980 lD~~i~ldal~~~-l~~~~~~~~~~g~~~l~~i~~~~~~~----l~~~-----------------------~~------- 1024 (3550)
T KOG0889|consen 980 LDPSTFLDALVES-LSHENSEMRPAGVRALKVIFSTSTLI----LGSP-----------------------ER------- 1024 (3550)
T ss_pred cCHHHHHHHHHHH-HhccchhhhhhHHHHHHHHHHHHHHh----hcCc-----------------------ch-------
Confidence 5667788888886 99999999999999988776432211 1100 00
Q ss_pred cCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhcccchhHHHH
Q 000159 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLV 912 (2013)
Q Consensus 834 ~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~-~~~~eL~~~L~~rL~DsN~~V~ 912 (2013)
.-...+...|-+.++..+-++.|..|..|+..|.-++..-+ ...- ....+++.+|.-++.|.-..+-
T Consensus 1025 -----------~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~-~~~l~d~~~d~~~~l~fvl~d~~~e~~ 1092 (3550)
T KOG0889|consen 1025 -----------AFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP-SLWLLDFQVDILKALFFVLKDTESEVS 1092 (3550)
T ss_pred -----------hhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch-HHHHHHHHHHHhhhHHHhhcCCccccc
Confidence 00012333445566666777777777777666666654321 1110 0123444444444433211111
Q ss_pred ----HHHHHHH----HHHHHHhChh-h-HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Q 000159 913 ----MATLITL----GAVASAMGPA-V-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTA 979 (2013)
Q Consensus 913 ----~~Al~~l----~~La~alg~~-~-~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--~~ll~~l~~~ 979 (2013)
..+-.++ ..+....+.. - ......++..+..-|-+.+..||+.+..+|..+.+..|. ..++..+-+.
T Consensus 1093 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ 1171 (3550)
T KOG0889|consen 1093 SLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDV 1171 (3550)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1111111 1111111111 1 134556778888888999999999999999999998863 3444433333
No 202
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.35 E-value=2.6e+02 Score=39.74 Aligned_cols=132 Identities=14% Similarity=0.003 Sum_probs=88.9
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHH
Q 000159 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVP 974 (2013)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g----l~~ll~ 974 (2013)
++..|..|....++..++.-++.........|-. ..++-.+=-.|.|+...||..+..+|..+..+-. +..+..
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFts 368 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTS 368 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3456779999999998888888777776655532 2334445567789999999999999999998832 222222
Q ss_pred ----HHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHH
Q 000159 975 ----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (2013)
Q Consensus 975 ----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L 1036 (2013)
.|.+.. +...++.+|..-+..+..... ...--..-+.+++.++-|.+..||.+|...+
T Consensus 369 RFK~RIVeMa-drd~~~~Vrav~L~~~~~~~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 369 RFKDRIVEMA-DRDRNVSVRAVGLVLCLLLSS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred HHHHHHHHHH-hhhcchhHHHHHHHHHHHHhc---ccccChhHHHHHHHHHhccCcchHHHHHHHH
Confidence 344444 333356777665555443221 1111245678899999999999999987655
No 203
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=69.13 E-value=2.7e+02 Score=33.88 Aligned_cols=153 Identities=19% Similarity=0.217 Sum_probs=85.3
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcch-HHHH-----HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ-SVEI-----LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~-~~~~-----lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2013)
.+++..+|.+.+--.+.-++..+.-++++-+..+. .... ++..+.. -+..+|-.|.+++.+.+..++-. +
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklild--cIggeddeVAkAAiesikrialf-p- 159 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILD--CIGGEDDEVAKAAIESIKRIALF-P- 159 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHH--HHcCCcHHHHHHHHHHHHHHHhc-H-
Confidence 36777788888888888888888888876543211 1111 1111111 13456677888888888876642 1
Q ss_pred CchhhHHHHHHHHHhh--hcChhhhHHH--------HHHHHHHHhhhC--h--------hHHHHHHHHHhhhCCChhHHH
Q 000159 677 FPKKCVVLCLLGISER--VADIKTRAHA--------MKCLTTFSEAVG--P--------GFIFERLYKIMKDHKNPKVLS 736 (2013)
Q Consensus 677 ~~~~~~~~il~~LveK--lgD~K~r~~a--------~e~L~~l~e~~~--~--------~~Vl~~L~~~l~~~KnpKv~~ 736 (2013)
..+..+++. +.|.+.|..| ...+..+.+.++ | .-++..+...+...++.-|+.
T Consensus 160 -------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVia 232 (524)
T KOG4413|consen 160 -------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIA 232 (524)
T ss_pred -------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehh
Confidence 112222211 1112222111 113333333322 2 124555666666678899999
Q ss_pred HHHHHHHHHHH-HhCCCCCChhhHHHHHHhc
Q 000159 737 EGILWMVSAVE-DFGVSHLKLKDLIDFCKDT 766 (2013)
Q Consensus 737 ~~l~~L~~li~-~fG~~~l~~k~li~~l~~~ 766 (2013)
-|++...++.+ ++|.+.+....+|+.+-..
T Consensus 233 nciElvteLaeteHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 233 NCIELVTELAETEHGREFLAQEGLIDLICNI 263 (524)
T ss_pred hHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence 99999888876 5666556656677776543
No 204
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=68.95 E-value=61 Score=43.36 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=108.8
Q ss_pred CCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Q 000159 318 IAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHK 395 (2013)
Q Consensus 318 i~~~~~-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k-lkdkk~~V~~aa~~aL~ai~~ 395 (2013)
..++++ ..+++.|...++|..+.|...+++.+..+++-+.-. -.-+.++|.|-.. ++..+..|+..+..|+..+++
T Consensus 381 t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~--~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q 458 (700)
T KOG2137|consen 381 TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP--FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ 458 (700)
T ss_pred CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH--HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH
Confidence 334333 578899999999999999999999999999988733 3344566666554 477888999999999998887
Q ss_pred hcCC--ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 396 AGCL--NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 396 ~~~~--~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
. +. ..-+.+..+..+.+...|.+...++....+++-..... .+ ....++|.+..+.-... -.+..+
T Consensus 459 ~-lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev--~~~~VlPlli~ls~~~~--------L~~~Qy 527 (700)
T KOG2137|consen 459 R-LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV--MAENVLPLLIPLSVAPS--------LNGEQY 527 (700)
T ss_pred H-HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee--ehhhhhhhhhhhhhccc--------ccHHHH
Confidence 6 21 22233444556677888999999999988887665442 11 12445555554432221 122233
Q ss_pred HHHhCchhHHHHHhhccHHHHHHHHHH
Q 000159 473 AKSVGMRPLERSIEKLDDVRRNKLSEM 499 (2013)
Q Consensus 473 ~~~~Ge~~~~~~l~~Ld~~~~kki~e~ 499 (2013)
.+++. .++.+++.++....++++..
T Consensus 528 ~~~m~--~i~~ml~~ie~~~~~kLq~~ 552 (700)
T KOG2137|consen 528 NKYMS--EIRLMLSAIEKPRANKLQKQ 552 (700)
T ss_pred HHHHH--HHHHHHhhhhHHHHHHhhhc
Confidence 33332 24556666666666666543
No 205
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.49 E-value=49 Score=40.45 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCCh
Q 000159 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNL 401 (2013)
Q Consensus 324 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~--~~~~l 401 (2013)
..+++.|...+.|...+|.-.|..+++.|+..-+...+-.-..-+|.+++.+.+.--...-+-..|+..+.-+ +...+
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence 3588889999999999998888888888876433222212224478899999888777777777888777655 11111
Q ss_pred --HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcC--hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 402 --VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS--KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 402 --~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~--~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
..++..+..-|. ..|-.++..+...|-.+...+. ...+-. .-.+|.+..++-|+.-+||..-..|+..+.
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e--sgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE--SGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh--cCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 123444666666 3455577777777766544322 222211 345788999999999999999888887664
No 206
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=68.05 E-value=1.1e+02 Score=46.40 Aligned_cols=181 Identities=11% Similarity=0.119 Sum_probs=115.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCC---C--h-hhHHHHHHhccc-chhHHHHHHHHHHHHHHHHHhChhhHhhhh
Q 000159 863 ESPDWKVRLESIEAVNKILEEANKRIQPA---G--T-GELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2013)
Q Consensus 863 ~d~~Wk~R~eale~l~~il~~a~~~I~~~---~--~-~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (2013)
...|-.++.-|++.|+++..+ .+... + | .+++..|...+. ..+..|+...++|+..|..+-+..+..--+
T Consensus 1147 ~~~n~~va~fAidsLrQLs~k---fle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWk 1223 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMK---FLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWK 1223 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcH
Confidence 444666899999998887753 22211 1 2 468888877774 345689999999999999998888877777
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-cC---c--hhhHHHHHHHHh---cCCCChhhHHHHHHHHH---HHhcc
Q 000159 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAA-VH---L--DKMVPYVTTALT---DAKLGAEGRKDLFDWLS---KQLTG 1003 (2013)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~-~g---l--~~ll~~l~~~L~---~~k~~p~~R~~~l~~L~---~~l~~ 1003 (2013)
.++..+-....|..+.+...|.+++..++.. .+ . ...+..++..|. +.+.+...-..++..|. ..+..
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~ 1303 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE 1303 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh
Confidence 7788887788899999999999999988754 22 1 123333344432 22112222233333333 22211
Q ss_pred CC-------------------------C------CCC----hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChh
Q 000159 1004 LS-------------------------G------FPD----AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQE 1046 (2013)
Q Consensus 1004 ~~-------------------------~------~~~----~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~ 1046 (2013)
.+ . ..+ +..++..+..+..|...+||..|...|..++...|..
T Consensus 1304 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1304 GDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred ccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 00 0 001 2223333555568999999999999998888777753
No 207
>PF05536 Neurochondrin: Neurochondrin
Probab=67.90 E-value=65 Score=43.06 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=114.2
Q ss_pred HHHHHHHHhcCCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHH
Q 000159 305 AVAELTKLASTKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPT 381 (2013)
Q Consensus 305 aL~~L~~l~~~pki~~-~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~ 381 (2013)
|+--|..+...|.+.. .++-+-++.|.+.+. .+...++..|++||..++. -....... ....+|.|.+.+.. .+.
T Consensus 77 avsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 77 AVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred HHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 5555666666666554 456677888888887 3334789999999999993 33332222 23566677766666 566
Q ss_pred HHHHHHHHHHHHHHh-c--C-----CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh--h---HHHHhhhhHHH
Q 000159 382 VAESLTQTLQAMHKA-G--C-----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK--A---AVLKVHKDYVP 448 (2013)
Q Consensus 382 V~~aa~~aL~ai~~~-~--~-----~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~--~---~l~~~l~~l~p 448 (2013)
..+.+...+..++.. + + ..+..+++.|...+..-.-..|-+.+.+|..++...+. . .-...++.+..
T Consensus 155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 677777777776654 1 0 11234555565555544456677889999999987741 1 11134456666
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 449 ICMECL-NDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 449 ~l~k~l-~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.+...+ +...+.-|+.|..+...+..++|.+
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 666666 4667789999999999999999975
No 208
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=67.08 E-value=57 Score=36.04 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=38.4
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCC----CCCCCChHHHHHHHHHHhc
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTK----RIAPGDFTEVCRTLKKLIT 335 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~p----ki~~~~~~~l~~~L~k~l~ 335 (2013)
.....|.+.+=++|.+|++.|..+++.+ .+....|+.++.+|.+.+.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHH
Confidence 4567789999999999999999998643 3555689999999987763
No 209
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.69 E-value=32 Score=45.04 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=83.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhcccc--CCC---CChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhH
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKR--IQP---AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~--I~~---~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~ 931 (2013)
.+.+.+.+..+..|..-+|....++.+-.+. ... ....+|+..|..||.|.+..++..|++.+..|+..- ..+-
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~ 381 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTV 381 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-cccc
Confidence 4556678889999999999999998752111 001 114578999999999999999999999999988543 2222
Q ss_pred hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000159 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
.--..++.-+..+|.|....||.-|+.-+..+.-.-+
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 2234678888999999999999999888877665443
No 210
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.52 E-value=26 Score=48.87 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=57.1
Q ss_pred CChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC--hHHHHHhhcCCHHHHHh
Q 000159 1303 KNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILG--EDIWRYVGKLTDAQKSM 1380 (2013)
Q Consensus 1303 KN~r~R~ecl~~l~~li~~~g~~~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G--~~v~~~vg~Ls~~~~s~ 1380 (2013)
=-+..|+.|+++||.-|+.|.-. .-..--||.|+..+.|++..||...+.+|--+|..-- +.+--|+...++.-.+|
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~-Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeM 377 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEI-FLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEM 377 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHH-HhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 34778999999999999999632 2222346999999999999999999999998887721 23444554554444444
Q ss_pred H
Q 000159 1381 L 1381 (2013)
Q Consensus 1381 l 1381 (2013)
.
T Consensus 378 a 378 (1048)
T KOG2011|consen 378 A 378 (1048)
T ss_pred H
Confidence 4
No 211
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.38 E-value=77 Score=41.82 Aligned_cols=104 Identities=14% Similarity=0.232 Sum_probs=77.3
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhh------cchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---hHh
Q 000159 333 LITDVNIAVAVEAIQAIGNLARGLRT------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---LVD 403 (2013)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~------~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~---l~~ 403 (2013)
.+......++-.-+.+++.+...+.+ .+.+.+..++..+-++|.|..+-+|..+.+.+..++.-++.. =..
T Consensus 307 LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e 386 (1128)
T COG5098 307 LLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE 386 (1128)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH
Confidence 44444444444445555555554433 344567788999999999999999999999999998762222 246
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000159 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (2013)
Q Consensus 404 il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (2013)
+...+...+++++.-||..+...+..++.+||=
T Consensus 387 v~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 387 VIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 788888999999999999999999999988863
No 212
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=65.27 E-value=38 Score=42.95 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhc-----C---------chh
Q 000159 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG---DNKKHMRECTLTVLDAWLAAV-----H---------LDK 971 (2013)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~---D~k~~Vr~aa~~aL~~i~~~~-----g---------l~~ 971 (2013)
..-+.+|++.+..+++..+....+.+-.++..++..+. ..+..-.++|...+.+++... | +..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 35677889999888877666655555555555555332 233346777888887777543 2 122
Q ss_pred hHH-HHHHHHh-cCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHH
Q 000159 972 MVP-YVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (2013)
Q Consensus 972 ll~-~l~~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L 1036 (2013)
++. .+.+-|. +.+..|-+|..++.++...-..+ +...+..+++.++.+|.+.+.-|+..|+-|+
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l-~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL-PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 222 2334454 22225889999999998644443 3345667788899999999999999887664
No 213
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.19 E-value=54 Score=39.06 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=69.2
Q ss_pred hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhc---CC---hHHHHHHHHHHHHHH
Q 000159 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN---KV---PLVRSLTLNWVTFCI 431 (2013)
Q Consensus 358 ~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~---Kn---p~vR~~~l~~L~~~l 431 (2013)
+..+-|...++.+| +.|.....++||..+|+ + -.++.+++|.++..+.+ +| -++-...+.....++
T Consensus 193 KELq~YF~kvisal---~dEs~~~~r~aAl~sLr----~-dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL 264 (450)
T COG5095 193 KELQMYFDKVISAL---LDESDEQTRDAALESLR----N-DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL 264 (450)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc----c-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 34445666666666 45788889998888776 2 35778888877655542 22 222222222333333
Q ss_pred HhcChhHHHHhhhhHHHHHHHHh------cCCC----HHHHHHHHHHHHHHHHHhCch
Q 000159 432 ETSSKAAVLKVHKDYVPICMECL------NDGT----PEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~l------~Ds~----~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.+ +.-.+.+++..++|.+..|+ ++++ -.+|+-|...+.-+++.||..
T Consensus 265 ~N-~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 265 KN-KYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred cC-CceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 32 21123367788888877776 2222 249999999999999888863
No 214
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=64.93 E-value=20 Score=42.90 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=69.4
Q ss_pred HHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh----hhhHHHHHHHHhcCCCH
Q 000159 386 LTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV----HKDYVPICMECLNDGTP 459 (2013)
Q Consensus 386 a~~aL~ai~~~--~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~----l~~l~p~l~k~l~Ds~~ 459 (2013)
+..||..+++. +..-...+++++..+|.+....||.-++.-+.++++.++...+... -..+.|.++-|+...+-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 44566666665 2222367899999999999999999999999999999886544332 25688999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000159 460 EVRDAAFSVLAAIA 473 (2013)
Q Consensus 460 ~VR~aA~~al~~l~ 473 (2013)
+|-++|.+.+..+.
T Consensus 143 eVAkAAiesikria 156 (524)
T KOG4413|consen 143 EVAKAAIESIKRIA 156 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887664
No 215
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=64.45 E-value=43 Score=34.62 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=55.6
Q ss_pred hHHHHHHhcccchh--H--HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000159 895 ELFGGLRGRLYDSN--K--NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (2013)
Q Consensus 895 eL~~~L~~rL~DsN--~--~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2013)
.++..+...+.|.. + .-...+++.++.+.+.+|+....+..++...+-..|. .+..|..+..|...++.++..+
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 34555556666655 3 2367899999999998887776666666666666665 5569999999999999998754
Q ss_pred hh
Q 000159 971 KM 972 (2013)
Q Consensus 971 ~l 972 (2013)
.+
T Consensus 89 ~l 90 (107)
T smart00802 89 EL 90 (107)
T ss_pred HH
Confidence 43
No 216
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=63.59 E-value=52 Score=33.99 Aligned_cols=77 Identities=12% Similarity=0.208 Sum_probs=52.1
Q ss_pred HHHHHHhcccc----hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchh
Q 000159 896 LFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK 971 (2013)
Q Consensus 896 L~~~L~~rL~D----sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2013)
++..+...+.| ....-...+++.++.+.+..|+.+..+...++..+-..+... .+|..+..|-+.+++.++.+.
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 44444555555 344566788999999999656555555555555554454444 899999999999999998555
Q ss_pred hHH
Q 000159 972 MVP 974 (2013)
Q Consensus 972 ll~ 974 (2013)
+-|
T Consensus 90 l~~ 92 (107)
T PF08064_consen 90 LGP 92 (107)
T ss_pred HHH
Confidence 444
No 217
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=63.13 E-value=65 Score=40.22 Aligned_cols=198 Identities=15% Similarity=0.168 Sum_probs=117.3
Q ss_pred ccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchH---HHHH---HHHHhcCCCCcccHHHHHHHHHHHHHHHHHH
Q 000159 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS---VEIL---VRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 673 (2013)
Q Consensus 600 ~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~---~~~l---v~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~ 673 (2013)
+.+++-+.+...++.|..|..++..+.+.+..+.-.... .+.+ +..+. ..++|-...+.++.|+.+..++..
T Consensus 392 dslddileaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiR--eaIddisaekfqasfelikciiah 469 (666)
T KOG4825|consen 392 DSLDDILEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIR--EAIDDISAEKFQASFELIKCIIAH 469 (666)
T ss_pred hhhhhHHHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666678888899999999999888777553221111 1111 00110 013555667788888888876655
Q ss_pred c---CCCch----hhHHHHHHHHHhhhcCh--hhhHHHHHHH---HHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHH
Q 000159 674 A---TKFPK----KCVVLCLLGISERVADI--KTRAHAMKCL---TTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 741 (2013)
Q Consensus 674 ~---~~~~~----~~~~~il~~LveKlgD~--K~r~~a~e~L---~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~ 741 (2013)
+ +.|+. .|+..-++.+.-.-||. +++..|.+.. -.+.+.-..+.|-+.|..++..+|.|-+...-...
T Consensus 470 likehkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggk 549 (666)
T KOG4825|consen 470 LIKEHKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGK 549 (666)
T ss_pred HcchhhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHH
Confidence 4 23443 24444455666666774 4555555544 34445555566666677777678888887776777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHhcC---CCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccH
Q 000159 742 MVSAVEDFGVSHLKLKDLIDFCKDTG---LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803 (2013)
Q Consensus 742 L~~li~~fG~~~l~~k~li~~l~~~g---L~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp 803 (2013)
|..++...|...-- -++..+++.| ..+.--.+|.+|...++.+|+.-. .+...++|.|
T Consensus 550 LarllkdlgkGrag--fiediakkfgVpaeehglndkreaafaiicdmtrdhQ--arsIgedLmp 610 (666)
T KOG4825|consen 550 LARLLKDLGKGRAG--FIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTRDHQ--ARSIGEDLMP 610 (666)
T ss_pred HHHHHHhcCCCccc--hhHHHHHHhCCCccccchhHHHHhHhhhhhhhcccHH--HHHHHhhcCc
Confidence 77888877653211 1222222222 445556799999999999986533 3334444444
No 218
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.38 E-value=5e+02 Score=39.11 Aligned_cols=298 Identities=12% Similarity=0.128 Sum_probs=164.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHH
Q 000159 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLL 687 (2013)
Q Consensus 610 L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~ 687 (2013)
+.+-+-|.|+.-++.+..-+...... ..+. +++ |..+.+..+.++..+.+... .+...++...--
T Consensus 812 fp~v~~k~~~~ile~~~esi~~sk~~--r~qs-V~~----------~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~ 878 (2067)
T KOG1822|consen 812 FPHVNNKIRLSILEHFPESIKQSKSA--RQQS-VQV----------NAVTWQALLSALKYLAEFKGATSLGPEEVRSSAL 878 (2067)
T ss_pred ccCccHHHHHHHHHHHHHHhhhhccc--hhHH-HHH----------HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence 33456777777777666555442111 0111 111 23344566666666666543 233333333222
Q ss_pred HHHh-hh--cChhhhHHHHHHHHHHHhhhChh----HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC--CChhh
Q 000159 688 GISE-RV--ADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH--LKLKD 758 (2013)
Q Consensus 688 ~Lve-Kl--gD~K~r~~a~e~L~~l~e~~~~~----~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~--l~~k~ 758 (2013)
.++. -+ .++++|=.+.+++..++...+-. .+.+.+++.+.+.+.|-.|.+-...++.+.+..|.-+ -.+..
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 2222 22 33577777888888887765532 3455566666677888889888888887777666421 11222
Q ss_pred HHHHHHhcCCCCC-cHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCC
Q 000159 759 LIDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 837 (2013)
Q Consensus 759 li~~l~~~gL~~~-n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~ 837 (2013)
-+..+..+ -+|+ .|.|++.+...+..+-.-.|+-++.|.+. .+.....-+-. .|+. +
T Consensus 959 ~v~illal-~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~----tlsl~~~lLls----~p~~--~----------- 1016 (2067)
T KOG1822|consen 959 SVSILLAL-ATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP----TLSLCLKLLLS----VPTS--H----------- 1016 (2067)
T ss_pred HHHHHHHH-hhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH----HHHHHHHHcCC----CCcc--h-----------
Confidence 22244444 4444 56999999999888777667665554422 22222222111 1110 0
Q ss_pred CCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHH--------HHHHhcccchhH
Q 000159 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF--------GGLRGRLYDSNK 909 (2013)
Q Consensus 838 ~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~--------~~L~~rL~DsN~ 909 (2013)
+++...+...+. +-+....++..-++.++++...+-. -...-.+..++.
T Consensus 1017 ----------~ev~q~~~R~~~-------------~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~ 1073 (2067)
T KOG1822|consen 1017 ----------VEVHQCYNRCFN-------------GDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDP 1073 (2067)
T ss_pred ----------hhhhhhhccccc-------------cchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCcc
Confidence 011000000000 0001223333334556665321111 122223455678
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~ 967 (2013)
-+..+++.|++.+...-.+ .-....|++.+...+..+--..|++...||..++...
T Consensus 1074 lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1074 LNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred chHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 8889999999988765443 3457889999999999999999999999999988654
No 219
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.22 E-value=6.5e+02 Score=35.45 Aligned_cols=437 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHh-------chhhh
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAA-------DADAG 88 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~-------~~~~~ 88 (2013)
+-+-+.|..=-.|.+=-+-+...+.. +....|..+.+.++.++...++..-..||-|+..+++.- +...+
T Consensus 94 Il~~iv~~p~~iRvql~~~l~~Ii~~---D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~ 170 (1010)
T KOG1991|consen 94 ILETIVQVPELIRVQLTACLNTIIKA---DYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLG 170 (1010)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhc---CCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHH
Q ss_pred hhHHHHHHHHHHhhcC----CChhHHHHHHHHHHHHHhh------------hhhhhHHHHHHHHhhcCCh----------
Q 000159 89 RYAKEVCDAIAAKCLT----GRPKTVEKAQAVFMLWVEL------------EAVDVFLDVMEKAIKNKVA---------- 142 (2013)
Q Consensus 89 ~~~~~v~~~LveK~l~----~k~~~k~~A~~~ll~~~E~------------~~~~~v~~~L~~~~~~Knp---------- 142 (2013)
+.+....|.|.+++-+ +.-+..+.-..+|-.|.-. +.-...++..+.-+..--|
T Consensus 171 ~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~ 250 (1010)
T KOG1991|consen 171 EAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPED 250 (1010)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhh
Q ss_pred -------hhHHHHHHHHHHHHHHhCCCCcCh-----------hHHHHhhhhhhcCCChHHHH---HHHHHHHHHHHhhCC
Q 000159 143 -------KAVVPAIDVMFQALSEFGAKIIPP-----------KRILKMLPELFDHQDQNVRA---SSKGLTLELCRWIGK 201 (2013)
Q Consensus 143 -------Kv~~~~l~~L~~~l~~fG~~~i~~-----------k~il~~l~~ll~~~d~~VR~---~a~~l~~ely~~lG~ 201 (2013)
|..-=++..|++++.+||..-... +.+.+.+...+=.---.-|. -+-.++--+..|+..
T Consensus 251 R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~ 330 (1010)
T KOG1991|consen 251 RSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQ 330 (1010)
T ss_pred cccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q ss_pred chhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000159 202 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDI 281 (2013)
Q Consensus 202 ~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdI 281 (2013)
...+....+.|+|-..--++.-+=-+ ..++ +++.+-||.-+-.=|
T Consensus 331 ~Vs~~~twkll~PHl~~ii~~vIFPl---mc~~--------------------------------d~deelwe~DP~EYi 375 (1010)
T KOG1991|consen 331 CVSHASTWKLLKPHLQVIIQDVIFPL---MCFN--------------------------------DEDEELWEEDPYEYI 375 (1010)
T ss_pred hccHHHHHHHhhhHHHHHHHHhhhhh---cCCC--------------------------------cccHHHHhcCHHHHH
Q ss_pred cccCcchhhhhhhccCCHHHHHHHHHHHHHHh--cCCCCCCCChHHHHHHHHHHhc----ccCHHHHHHHHHHHHHHHHH
Q 000159 282 LTPLEKSGFWEGVKATKWSERKDAVAELTKLA--STKRIAPGDFTEVCRTLKKLIT----DVNIAVAVEAIQAIGNLARG 355 (2013)
Q Consensus 282 l~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~--~~pki~~~~~~~l~~~L~k~l~----D~N~~V~~~A~~~l~~La~~ 355 (2013)
-.++ +|++...+. +.+|+.-+..++ .++...++-.+-+++.|...-. ..|..-...|+.+++.|+..
T Consensus 376 R~~~---Di~ed~~sp----~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~ 448 (1010)
T KOG1991|consen 376 RKKF---DIFEDGYSP----DTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASI 448 (1010)
T ss_pred HhcC---chhcccCCC----cHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHH
Q ss_pred hhhc--chhhhH-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh---cCCChHhHHHHHHHHhh-cCChHHHHHHHHHHH
Q 000159 356 LRTH--FSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVT 428 (2013)
Q Consensus 356 L~~~--f~~~~~-~llp~LL~klkdkk~~V~~aa~~aL~ai~~~---~~~~l~~il~~l~~~l~-~Knp~vR~~~l~~L~ 428 (2013)
|.++ |...++ .+++.++--|..+--..|.-+...+..+..- ....+...++....+|. ++.=.||.+++..|.
T Consensus 449 L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq 528 (1010)
T KOG1991|consen 449 LLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQ 528 (1010)
T ss_pred HccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHH
Q ss_pred HHHHhcChh-H-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHh
Q 000159 429 FCIETSSKA-A-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 429 ~~l~~~~~~-~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
.++...... . +..+++.++..+.++.++-.-+. =..++.++...++++ +.||...|-.......-.++.
T Consensus 529 ~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseE-lsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 529 SFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEE-LSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHh
No 220
>PF05536 Neurochondrin: Neurochondrin
Probab=59.63 E-value=5.8e+02 Score=34.32 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=98.6
Q ss_pred hhhHHHHHHhcccchh-HHHHHHHHHHHHHHHHHhChhhHhhhh-hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-
Q 000159 893 TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL- 969 (2013)
Q Consensus 893 ~~eL~~~L~~rL~DsN-~~V~~~Al~~l~~La~alg~~~~~~~~-~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl- 969 (2013)
+-+.++.|...+.... ..++..++.++..|+ +...+...++. .-++.+.+.+.+ .+...+.|...+..++...+.
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchh
Confidence 3556677777774444 488899999999998 55444444333 356677766666 666778888888777766652
Q ss_pred ---------hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC----C---CChhh-hHHHHHhhc-CCCChHHHHH
Q 000159 970 ---------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG----F---PDAAH-LLKPASIAM-TDKSSDVRKA 1031 (2013)
Q Consensus 970 ---------~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~----~---~~~~~-ll~pl~~~L-~D~~~dVR~a 1031 (2013)
..+++.+...+... .-..|-++|..|...|...+. . +.+.. +...+...| ..-.+.-|..
T Consensus 174 ~~~~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 174 SWAEDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 24445555555432 235688999999998887731 1 12222 223355555 4556678999
Q ss_pred HHHHHHHHHHHcChhHH
Q 000159 1032 AEACIVEILRAGGQETI 1048 (2013)
Q Consensus 1032 A~~~L~~l~~~~G~~~~ 1048 (2013)
|..+...++.++|.+-+
T Consensus 252 al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 252 ALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHHHHHHHhChHhh
Confidence 99999999999887643
No 221
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=59.49 E-value=9.4 Score=32.32 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000159 444 KDYVPICMECLNDGTPEVRDAAFSVL 469 (2013)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~al 469 (2013)
+.+...+.+.+.|+++.||++|.+++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888999999999999999998763
No 222
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=59.17 E-value=1.1e+02 Score=38.08 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=70.9
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHh
Q 000159 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKSV 476 (2013)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~-Ds~~~VR~aA~~al~~l~~~~ 476 (2013)
..-.+++..|..-|.|++|.|-..++..+..|..+|++..-.. ....+...|.++++ -+++.|++.-+..+......+
T Consensus 41 ~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 3446788888889999999999999999999999998753222 34678888888888 788999999999888888777
Q ss_pred CchhHHHHHhhcc
Q 000159 477 GMRPLERSIEKLD 489 (2013)
Q Consensus 477 Ge~~~~~~l~~Ld 489 (2013)
..+.--.+|..|-
T Consensus 121 K~Dp~lsLi~~l~ 133 (462)
T KOG2199|consen 121 KKDPSLSLISALY 133 (462)
T ss_pred ccCcchhHHHHHH
Confidence 7654444555443
No 223
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=59.01 E-value=1.2e+02 Score=36.34 Aligned_cols=111 Identities=21% Similarity=0.343 Sum_probs=70.6
Q ss_pred hhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCc---chHHHHHHHhhHHHHHHHHHhc
Q 000159 1169 KYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKS---NTTCLLKVLEFLPELFDTLRDE 1245 (2013)
Q Consensus 1169 ~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dt---N~~vl~k~Le~l~~l~~~l~~~ 1245 (2013)
-+|.+-+..++-.+|-+.|-+|++.|... +-+..++-||.-.|.|. |-+=+ ..|-.+-++.-.|-++
T Consensus 197 ~YF~kvisal~dEs~~~~r~aAl~sLr~d---------sGlhQLvPYFi~f~~eqit~Nl~nl-~~LtTv~~m~~sLL~N 266 (450)
T COG5095 197 MYFDKVISALLDESDEQTRDAALESLRND---------SGLHQLVPYFIHFFNEQITKNLKNL-EKLTTVVMMYSSLLKN 266 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC---------ccHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhcC
Confidence 36777666777678888888899888654 22444556665555553 22211 2233444455567788
Q ss_pred CCCCCHHHHHhhhhHHHH-----hhcC-ChH----HHHHHHHHHHHHHhhccCc
Q 000159 1246 GYSLTESEAAVFLPCLVE-----KSGH-NIE----KVREKMRELTKQIVNFYSA 1289 (2013)
Q Consensus 1246 ~y~l~~~Ea~~~lP~L~~-----K~Gd-~k~----~vr~~v~~il~~i~~v~p~ 1289 (2013)
.|.|-|-..-.++|.++. |+|. ++| .+|.-...+++-++.-||.
T Consensus 267 ~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 267 KYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred CceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH
Confidence 999999998888887643 6665 655 4677666666666665543
No 224
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=58.41 E-value=90 Score=36.00 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh--cCChH
Q 000159 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK--NKVPL 418 (2013)
Q Consensus 341 V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~--~Knp~ 418 (2013)
+-...+.+++.+...+|....++...++..|-+.-.+..-..++.+..|+.+.+.. .+++.++..+--.+. ++...
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~a--mGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRA--MGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH--CCHHHHHHHCCCCccCCCcCCc
Confidence 55667889999999999998888888888888877777778899999999999986 888888876532232 23333
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHH
Q 000159 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICM 451 (2013)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~ 451 (2013)
-|.-.+-.|...+... .+.-....++|...
T Consensus 94 ~raWLLPlLr~~i~~~---~L~fF~~~~lPla~ 123 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA---SLSFFVEEFLPLAR 123 (198)
T ss_pred ccchhHHHHHHhccCC---ChHHHHHHHHHHHH
Confidence 4433444444433332 23333445555444
No 225
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=58.16 E-value=35 Score=35.88 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=60.5
Q ss_pred cccHHHHHhhhc-CCChhhHHHHHHHHHHHHHhhCCCcccccchH-HHHHHhhcCCChHHHHHHHHHHHHHHHHh-C---
Q 000159 1290 TKTLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKIL-G--- 1363 (2013)
Q Consensus 1290 skvf~~l~~gl~-sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l-~~ia~~i~drd~~VR~AAl~~l~~~y~~~-G--- 1363 (2013)
.+++|++.+|++ ++++..|..|.-.++.+..+..++.. -..++ +.|++.....+. ...|+.||+.+|... +
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-VLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-HHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 468899999998 99999999999999999988887631 11232 555555544443 577999999999877 3
Q ss_pred --hHHHHHhhcCCH
Q 000159 1364 --EDIWRYVGKLTD 1375 (2013)
Q Consensus 1364 --~~v~~~vg~Ls~ 1375 (2013)
+++++.+-.++.
T Consensus 82 lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 82 LPRKVFKALLKLPD 95 (121)
T ss_pred CCHHHHHHHHcCcc
Confidence 236666665554
No 226
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=57.01 E-value=4.3e+02 Score=35.42 Aligned_cols=131 Identities=13% Similarity=0.140 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHH---HhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHH
Q 000159 340 AVAVEAIQAIGNLAR---GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKT 410 (2013)
Q Consensus 340 ~V~~~A~~~l~~La~---~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~------~il~~l~~ 410 (2013)
-+++.||.|+..+++ .|+..|.. ..+..+|+..+-+....|..++..++..++-. -.++. ..++.+..
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVme-fs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVME-FSNLKSKFLRNNGIDILES 468 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhh-cccHHHHHHHcCcHHHHHH
Confidence 467888888877765 67777542 33445555555788888888888888876644 12332 23566777
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 411 SVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 411 ~l~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
.+.++.+.+|..++.+|...+=.++... +..+-+--...+....+|++.+|.+.+++.+-.+.
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 7788999999999988888765554322 22233444566777889999999999998887663
No 227
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.34 E-value=32 Score=45.97 Aligned_cols=240 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccc
Q 000159 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 853 (2013)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~ 853 (2013)
++|-+|-.++..++...| +-+-|.+++.+...++..+......-+..+++.+--++.+-+..+...-+|....
T Consensus 412 ~lRPCaE~L~~~lF~~ys-------qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~W 484 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYS-------QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKW 484 (978)
T ss_pred ccchhHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q ss_pred cchHHHHhcCCC--ChHH-HHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch-hHHHHHHHHHHHHHHHHH---h
Q 000159 854 FTPTLVKSLESP--DWKV-RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASA---M 926 (2013)
Q Consensus 854 L~~~ll~~l~d~--~Wk~-R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~~La~a---l 926 (2013)
+...++-.+... +.++ |..-.--++..+. -++....-.-+-.++...+.|. ..-|+.+|.+++..+..- +
T Consensus 485 l~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvs---vq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~ 561 (978)
T KOG1993|consen 485 LQEALLPELANDHGNSRIIRRRVAWILGQWVS---VQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFS 561 (978)
T ss_pred HHHhhCHHhhhcccchhHHHHHHHHHHhhhhh---eechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCC
Q ss_pred ChhhHhhhhhHHHHHHHHhCCCcHH-HHHHHHHHHHHHHHhcC---------chhhHHHHHHHHhcCCCChhhHHHHHHH
Q 000159 927 GPAVEKSSKGVLSDILKCLGDNKKH-MRECTLTVLDAWLAAVH---------LDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2013)
Q Consensus 927 g~~~~~~~~~llp~ll~~L~D~k~~-Vr~aa~~aL~~i~~~~g---------l~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2013)
...|-+|.+.+.-.+++.+..-... .|....++|.+++.+++ +-.++|.+++.-+.. +-+|..++..
T Consensus 562 ~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e---~lLr~alL~~ 638 (978)
T KOG1993|consen 562 EDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEE---PLLRCALLAT 638 (978)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccC---cHHHHHHHHH
Q ss_pred HHHHhccCCC-CCChhhhHHHHHhhcCCCCh
Q 000159 997 LSKQLTGLSG-FPDAAHLLKPASIAMTDKSS 1026 (2013)
Q Consensus 997 L~~~l~~~~~-~~~~~~ll~pl~~~L~D~~~ 1026 (2013)
|...+..++. +....+++-|++..-.|.++
T Consensus 639 L~~lV~alg~qS~~~~~fL~pVIel~~D~~s 669 (978)
T KOG1993|consen 639 LRNLVNALGAQSFEFYPFLYPVIELSTDPSS 669 (978)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHhcCCCC
No 228
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=56.25 E-value=2.4e+02 Score=35.96 Aligned_cols=174 Identities=14% Similarity=0.069 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhc
Q 000159 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK 376 (2013)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klk 376 (2013)
+.=-||..|++-+++++..++-...--..++++|..+..+..-..+..|+.++.+|+-.-..-+ -. -.-+..|++.+.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv-~~-~gG~~~L~~~l~ 157 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELV-AE-CGGIRVLLRALI 157 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH-HH-cCCHHHHHHHHH
Confidence 3346899999999998743211111124688888888887777788888888888874321111 01 122355566666
Q ss_pred cCcHHHHHHHHHHHHHHHHhcC--------CChHhHHHHHHHHh---hcCCh--HHHHHHHHHHHHHHHhcChhH-HHHh
Q 000159 377 EKKPTVAESLTQTLQAMHKAGC--------LNLVDVVEDVKTSV---KNKVP--LVRSLTLNWVTFCIETSSKAA-VLKV 442 (2013)
Q Consensus 377 dkk~~V~~aa~~aL~ai~~~~~--------~~l~~il~~l~~~l---~~Knp--~vR~~~l~~L~~~l~~~~~~~-l~~~ 442 (2013)
|....+.+++..++-.++.+.. ..++.++-.+...- .+.+. ..-..+...+..++..|+.=- +...
T Consensus 158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 158 DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 6544477777777777776511 12233333232220 11222 123355666777788886311 1000
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
-..-+..++.+|.-+.+++|+.-...|-.+
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 013456677788888999988877665433
No 229
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=55.73 E-value=1.2e+02 Score=37.62 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHhcCCC---------hHhHHH
Q 000159 343 VEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-------KKPTVAESLTQTLQAMHKAGCLN---------LVDVVE 406 (2013)
Q Consensus 343 ~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkd-------kk~~V~~aa~~aL~ai~~~~~~~---------l~~il~ 406 (2013)
.+.+.++..+.+.++..+.+++..++..+++..-+ .-|..|..-..-|.++..+ |.. +..+++
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-~f~~l~~lp~~~f~~~id 168 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH-CFPALLQLPPEQFKLVID 168 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH-HTHHHHHS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHHH
Confidence 45688999999999998888877777777766522 4588999999999998887 322 245677
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000159 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (2013)
Q Consensus 407 ~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (2013)
.+.-|++|.+..+-..+++.|..++.....
T Consensus 169 si~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 169 SIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 788889999999999999999998876544
No 230
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=55.23 E-value=2.2e+02 Score=38.41 Aligned_cols=146 Identities=17% Similarity=0.244 Sum_probs=104.8
Q ss_pred ChH-HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000159 322 DFT-EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (2013)
Q Consensus 322 ~~~-~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~ 399 (2013)
+|. .++.+|+.++. -.+..+...=++=+..|.+.+..+ .....++|-|...+++....+++.+...+-.+... .
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~--i 420 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAES--I 420 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh--c
Confidence 453 55667777776 444444444445555566666543 45778999999999999999999999999888876 3
Q ss_pred Ch----HhHHHHHHH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000159 400 NL----VDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 400 ~l----~~il~~l~~-~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~ 474 (2013)
.+ ..|+|.|.. ++++-+..+|..++-.++.+++..++... -+.+..+.+|+.-.+|.+--.-...+..++-
T Consensus 421 D~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v----~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 421 DVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV----LDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred cHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 32 346677654 56788999999999999999987766544 3345567788888888887777777766664
Q ss_pred H
Q 000159 475 S 475 (2013)
Q Consensus 475 ~ 475 (2013)
.
T Consensus 497 ~ 497 (700)
T KOG2137|consen 497 I 497 (700)
T ss_pred h
Confidence 4
No 231
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.10 E-value=1.4e+02 Score=44.26 Aligned_cols=134 Identities=15% Similarity=0.212 Sum_probs=84.9
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHH-HHHHHHHHHHHHh-cCCChHhHH----H
Q 000159 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVA-ESLTQTLQAMHKA-GCLNLVDVV----E 406 (2013)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~-~aa~~aL~ai~~~-~~~~l~~il----~ 406 (2013)
-+...|+..+-.+..+++.|+...+.. +++..+...+++++++.+..++ ..-.-|+..+.++ +...-.+.+ .
T Consensus 884 sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~ 961 (2067)
T KOG1822|consen 884 SLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVS 961 (2067)
T ss_pred hhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHH
Confidence 344677777777888888888876653 7788999999999999877664 4555566777777 333333333 3
Q ss_pred HHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh---cCCCHHHHHHHHHHH
Q 000159 407 DVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVL 469 (2013)
Q Consensus 407 ~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l---~Ds~~~VR~aA~~al 469 (2013)
.++.-.+ +..|.|+.-++..+...+..+.+-. ..+....+-.+.+++ .+++.+|+..=-+|+
T Consensus 962 illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 962 ILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 3444334 5667999999999998888776542 222232233333332 345556555444444
No 232
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=54.02 E-value=60 Score=36.33 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh
Q 000159 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2013)
Q Consensus 867 Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L 945 (2013)
-..|+.|.|.+..++..+..++. ..+++..+..-|+| ...|+..++.++..++......+.+.+..++.++-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999985433333 57889999999999 99999999999999987766666666666666665555
No 233
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=53.79 E-value=82 Score=32.61 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhcc
Q 000159 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (2013)
Q Consensus 416 np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld 489 (2013)
...-|..++.-+..+++-.+ ..+...++.++-.|..+++ .++.|..|.+|...+.+.+.++.+.++++..-
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~ 98 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQIF 98 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34668889988888888544 3455566777888888886 66899999999999999999988888877643
No 234
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=53.12 E-value=1.6e+02 Score=35.31 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=64.7
Q ss_pred HHHHHHHHhhccCccc-------cHHHHHhhh-cCCChhhHHHHHHHHHHHHHhhCCCc--ccccchHHHHHHhhcCCCh
Q 000159 1276 MRELTKQIVNFYSATK-------TLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEI--SGQLKSLQIVASLTAERDG 1345 (2013)
Q Consensus 1276 v~~il~~i~~v~p~sk-------vf~~l~~gl-~sKN~r~R~ecl~~l~~li~~~g~~~--~~~~k~l~~ia~~i~drd~ 1345 (2013)
.-.+++.+|.++|+++ ....+++=+ .+..+.....||+-+.+++-.+..+. +.....+..|+.++.++..
T Consensus 111 aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 111 ALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred HHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 3468999999999986 345566667 55678999999999999987776654 2334457889999988765
Q ss_pred HHHHHHHHHHHHHHHHhChH
Q 000159 1346 EIRKAALNTLATGYKILGED 1365 (2013)
Q Consensus 1346 ~VR~AAl~~l~~~y~~~G~~ 1365 (2013)
. |+-=+.|+.-+|.++++.
T Consensus 191 ~-~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 191 D-RELRLKCIEFLYFYLMPE 209 (257)
T ss_pred c-HHHhHHHHHHHHHHHccc
Confidence 2 444466777777776553
No 235
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=52.39 E-value=1.5e+02 Score=37.26 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=65.4
Q ss_pred HHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHH
Q 000159 1174 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 1253 (2013)
Q Consensus 1174 ~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~E 1253 (2013)
.+.+.|.+.+...|..|++.|... ..+-..+--+++|++-...-+..+ ....|.++-.++..|..+.+-.-|..
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~tD-----~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRTD-----PGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhccC-----CCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 466667778889999999988654 222222333444443322211111 23334555556667888887777888
Q ss_pred HHhhhhHHHHhh-----c-----CChHHHHHHHHHHHHHHhhccCcc
Q 000159 1254 AAVFLPCLVEKS-----G-----HNIEKVREKMRELTKQIVNFYSAT 1290 (2013)
Q Consensus 1254 a~~~lP~L~~K~-----G-----d~k~~vr~~v~~il~~i~~v~p~s 1290 (2013)
.-.|+|.++..+ | ++.-.+|+---.++..+|.-|..+
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999888655 2 223356666666666666555443
No 236
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=52.32 E-value=74 Score=35.48 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCC----Ch-----hhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 866 DWKVRLESIEAVNKILEEANKRIQPA----GT-----GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 866 ~Wk~R~eale~l~~il~~a~~~I~~~----~~-----~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
+++.|.-|++.+..+++.++..+... .+ .+++..|.+.+...+..+...+++++..+...++..++...+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999998654444421 11 2344555555544558899999999999999999999999999
Q ss_pred HHHHHHHHhCCCc---HHHHHHHHHHHHHHHH
Q 000159 937 VLSDILKCLGDNK---KHMRECTLTVLDAWLA 965 (2013)
Q Consensus 937 llp~ll~~L~D~k---~~Vr~aa~~aL~~i~~ 965 (2013)
+++.++..+-+++ ...|..+.+++..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 9999988444332 3577777777777665
No 237
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=50.64 E-value=24 Score=29.38 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 445 DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
-.+|.|+++|.+.+++||..|.-+|+.+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999998775
No 238
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=49.48 E-value=1.5e+02 Score=37.16 Aligned_cols=94 Identities=18% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc-CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHH----hcChhHHH
Q 000159 367 LLPVLLEKL-KEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TSSKAAVL 440 (2013)
Q Consensus 367 llp~LL~kl-kdkk~~V~~aa~~aL~ai~~~~-~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~----~~~~~~l~ 440 (2013)
++..++..+ ||.+..+..++..++..++... ..-.+.+++.+..++++|.+.+|..-+..+..++. ........
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~ 102 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAE 102 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHH
Confidence 333333333 6788888888888887776652 23346789999999999999999999888888886 11112222
Q ss_pred HhhhhHHHHHHHHhcCCCHH
Q 000159 441 KVHKDYVPICMECLNDGTPE 460 (2013)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~ 460 (2013)
..++.+...+.++...+.+.
T Consensus 103 ~~~~~L~~~~~~~~~~p~~~ 122 (339)
T PF12074_consen 103 PFLPKLLQSLKEASANPLQS 122 (339)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 33444444444444555443
No 239
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=48.94 E-value=2e+02 Score=41.55 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=59.7
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCC-CCCHHHHHhhhhHHHHhhcCC
Q 000159 1190 GLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY-SLTESEAAVFLPCLVEKSGHN 1268 (2013)
Q Consensus 1190 al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y-~l~~~Ea~~~lP~L~~K~Gd~ 1268 (2013)
|-..|..++.+ |.| ++.|+..|=+-.++.|...++..+.++ +.+.+| .+..+ .+|...+.|+||.
T Consensus 490 gr~AL~nLL~~-------N~d-Ll~~~IdrCYss~~~va~gYF~vlaev---~~~~~~~~~~~~---~LL~L~Lfklg~~ 555 (1120)
T PF14228_consen 490 GRRALKNLLEH-------NPD-LLDWVIDRCYSSSPRVAEGYFTVLAEV---FSEREYPPCPFW---ELLNLVLFKLGDE 555 (1120)
T ss_pred HHHHHHHHHHh-------hHH-HHHHHHHHhcCCChhHHHHHHHHHHHH---HHcCCCCCCCHH---HhHHHHHHhhcCC
Confidence 44445555443 345 688988887778899988877666654 445554 45544 4778889999999
Q ss_pred hHHHHHHHHHHHHHHhh
Q 000159 1269 IEKVREKMRELTKQIVN 1285 (2013)
Q Consensus 1269 k~~vr~~v~~il~~i~~ 1285 (2013)
...||+.-..+|+.+..
T Consensus 556 ~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 556 SSEIRSKAMQLLRALEE 572 (1120)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999987764
No 240
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=48.88 E-value=9.7e+02 Score=33.72 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=110.6
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHH------------------
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT------------------ 915 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~A------------------ 915 (2013)
+..-++..+-|+.-.+|..|+..+.+++.-...... +.|+.++..--.|.-..++..+
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~----~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt 548 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA----FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT 548 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch----HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch
Confidence 444567788899999999999999888862111110 1111111111111111111000
Q ss_pred --H----HHHHHH-HHHhChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh---cCC
Q 000159 916 --L----ITLGAV-ASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT---DAK 984 (2013)
Q Consensus 916 --l----~~l~~L-a~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~---~~k 984 (2013)
+ +++... .+.||+.-..+-+-++--++..+. |.|..|+.+|...+..+..+|.....+|...-.|+ ...
T Consensus 549 ~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~ 628 (1529)
T KOG0413|consen 549 DLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDR 628 (1529)
T ss_pred hhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCc
Confidence 0 111111 122333322334456667778888 99999999999999999999998888886444443 222
Q ss_pred CChhhHHHHHHHHHHHhccCCCCC-ChhhhHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 985 LGAEGRKDLFDWLSKQLTGLSGFP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 985 ~~p~~R~~~l~~L~~~l~~~~~~~-~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
. ..+|...++-|.+.+-.-+.-. -...++..++..++|...+|-+.|.+.+..+
T Consensus 629 ~-vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 629 M-VSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred c-hHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 2 4578888888888765444322 2356778888999999999999999865544
No 241
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=48.66 E-value=8.9e+02 Score=33.19 Aligned_cols=304 Identities=13% Similarity=0.098 Sum_probs=155.3
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHH
Q 000159 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (2013)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~ 1051 (2013)
+++.+.++++++ .--+|..+|.++...=..++...-...+.....+||.+.+-.||-.|.-+|..++.+-. +.+.
T Consensus 461 iv~hv~P~f~s~--ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q---~h~k 535 (970)
T COG5656 461 IVNHVIPAFRSN--YGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ---SHEK 535 (970)
T ss_pred HHHHhhHhhcCc--ccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh---hhHH
Confidence 344566677765 24689999999987633344333455667778999999999999999999998887652 2222
Q ss_pred hccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhh
Q 000159 1052 LKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL 1131 (2013)
Q Consensus 1052 l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (2013)
+...-|..+.++...-..... +.=++
T Consensus 536 ~sahVp~tmekLLsLSn~fei----------------------------------------------------D~LS~-- 561 (970)
T COG5656 536 FSAHVPETMEKLLSLSNTFEI----------------------------------------------------DPLSM-- 561 (970)
T ss_pred HHhhhhHHHHHHHHhcccccc----------------------------------------------------hHHHH--
Confidence 222223333333221000000 00000
Q ss_pred cccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhh-------hhHHH----HHhhc-ccCH-----HHHHHHHHHH
Q 000159 1132 LNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKY-------FREDL----HRRLL-STDF-----KKQVDGLEML 1194 (2013)
Q Consensus 1132 ~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~-------~~~~l----~~~lf-s~D~-----k~~~~al~~L 1194 (2013)
.-++.||+--++.+++ +..++ ++.|- ++|+ -+.++|...|
T Consensus 562 -----------------------vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL 618 (970)
T COG5656 562 -----------------------VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGIL 618 (970)
T ss_pred -----------------------HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence 0011222111111111 11111 11111 2222 3567777766
Q ss_pred HHhcccChhhHHHHHHHHHHHHHHhhcCc-chHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcC-ChHHH
Q 000159 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKS-NTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKV 1272 (2013)
Q Consensus 1195 ~~~l~~~~~~~i~~lDlllk~~~lr~~dt-N~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd-~k~~v 1272 (2013)
+.... ---...|.-.+||++---|.+- ++-+.....||.++.++.+.. |.+.-.|...+.+.+.+++|+ +++..
T Consensus 619 ~T~~s--miLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg--~tf~skeI~pimwgi~Ell~~~l~~~~ 694 (970)
T COG5656 619 RTIES--MILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDG--YTFMSKEIEPIMWGIFELLLNLLIDEI 694 (970)
T ss_pred HHHHH--HHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--hhHHHHHhhhhhhHHHHHHHhcccccc
Confidence 65310 0001124455777766655554 666667777888888888765 556666777999999999998 44433
Q ss_pred H-HHHHHHHHHHhhc--cC-----c-----cccHHHHHhhhcCCCh--hhHHHHHHHHHHHHHhhCCCcccccc-hHHHH
Q 000159 1273 R-EKMRELTKQIVNF--YS-----A-----TKTLPYILEGLRSKNN--RTRIECVDLVGFLIDHHGAEISGQLK-SLQIV 1336 (2013)
Q Consensus 1273 r-~~v~~il~~i~~v--~p-----~-----skvf~~l~~gl~sKN~--r~R~ecl~~l~~li~~~g~~~~~~~k-~l~~i 1336 (2013)
- .-+.+....+..+ |+ - +.++.+++..+.+--. .-+....+.+..++-.++-+...+-. .+-.+
T Consensus 695 t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~v 774 (970)
T COG5656 695 TAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISV 774 (970)
T ss_pred hhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHH
Confidence 1 2233333333332 22 1 1244444444544332 33444445555555555543322222 23333
Q ss_pred HH---hhcCCChHHHHHHHHHHHHHHHH
Q 000159 1337 AS---LTAERDGEIRKAALNTLATGYKI 1361 (2013)
Q Consensus 1337 a~---~i~drd~~VR~AAl~~l~~~y~~ 1361 (2013)
|. ...|.++--+..|++.+......
T Consensus 775 ags~l~~~dElg~~sv~aleliinnli~ 802 (970)
T COG5656 775 AGSGLKMIDELGPASVYALELIINNLIL 802 (970)
T ss_pred HhhhhhccccccchhhhHHHHHHHHHhc
Confidence 32 22355556677777777655433
No 242
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=47.84 E-value=4.3e+02 Score=29.43 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhhc--CChHHHHHHHHHHHHHHHhcChh--HHHHhhhhHHHHHHH
Q 000159 381 TVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDYVPICME 452 (2013)
Q Consensus 381 ~V~~aa~~aL~ai~~~~~~~l~----~il~~l~~~l~~--Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l~p~l~k 452 (2013)
.+-.-+-.|+..++.+|.++.+ .++..+...... .++.+-+.++.+|..++...+.. .+.+ +.-++.+..
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~--evt~~~Li~ 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQ--EVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhc--cCCHHHHHH
Confidence 4444555666667777544543 455566655553 35889999999999988865431 1111 345678889
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhc
Q 000159 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (2013)
Q Consensus 453 ~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~L 488 (2013)
.|.+++++++..|...+.++....++..-..+.+.|
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l 145 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKADDSKRKEIAETL 145 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999999999999998888777764333333333
No 243
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.66 E-value=1.5e+02 Score=40.03 Aligned_cols=167 Identities=15% Similarity=0.146 Sum_probs=102.9
Q ss_pred hhhhhh-ccCCHHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhH
Q 000159 289 GFWEGV-KATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (2013)
Q Consensus 289 ~f~~~l-~s~kWkeR~eaL~~L~~l~~~pki~--~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (2013)
.+.+++ .++=..+|++|+..|.++...-|+. ......++..|..= -.+.-++..++.++--+.. .+=.+
T Consensus 26 kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~---~dd~~--- 97 (970)
T KOG0946|consen 26 KLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD--YMDPEIIKYALDTLLILTS---HDDSP--- 97 (970)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHh---cCcch---
Confidence 455555 4477789999999998887532222 11233333333331 1233344444444433322 11000
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH---h
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK---V 442 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~---~ 442 (2013)
- -.++++ .+.+-+....+.++++ ++.+..++..+.+.+-.||..+.+.+..++.+-+.. +.+ .
T Consensus 98 ----~---v~dds~-qsdd~g~~iae~fik~-----qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e-~q~~ll~ 163 (970)
T KOG0946|consen 98 ----E---VMDDST-QSDDLGLWIAEQFIKN-----QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE-LQDALLV 163 (970)
T ss_pred ----h---hcccch-hhhHHHHHHHHHHHcC-----chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 0 012333 3444444444555554 567777888999999999999999999999876643 222 2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
.+.=+..++..|.|+...+|+.|.-.|..+.+--+
T Consensus 164 ~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 164 SPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS 198 (970)
T ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence 46667788999999999999999988887765444
No 244
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.83 E-value=4.6e+02 Score=32.42 Aligned_cols=175 Identities=13% Similarity=0.146 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHHh-cCCCCCCC-ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH---hhhcchhhhHhHHHHH
Q 000159 297 TKWSERKDAVAELTKLA-STKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSGSSRFLLPVL 371 (2013)
Q Consensus 297 ~kWkeR~eaL~~L~~l~-~~pki~~~-~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~---L~~~f~~~~~~llp~L 371 (2013)
.+-..=+.+|+.|..+. +.|++... ...=++..|..-..|... --.+++++..-+.+ -|..|-. -.+++-|
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dl--t~~~~~~v~~Ac~~hE~nrQ~~m~--~~il~Li 194 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEV--TLLTLQWLQKACIMHEVNRQLFME--LKILELI 194 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHH--HHHHHHHHHHHHHHhHHHHHHHHH--hhHHHHH
Confidence 33334456777777777 57877653 333444544443334443 23334444433321 1222211 1344444
Q ss_pred HHH-hccCcHHHHHHHHHHHHHHHHh-------cC-CChHh------HHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcC
Q 000159 372 LEK-LKEKKPTVAESLTQTLQAMHKA-------GC-LNLVD------VVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSS 435 (2013)
Q Consensus 372 L~k-lkdkk~~V~~aa~~aL~ai~~~-------~~-~~l~~------il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~ 435 (2013)
+.. .++.|..++.++..++.++.-- ++ .+... ++-.+.++++. -.|.+-.+.+..|.++.-+
T Consensus 195 ~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-- 272 (461)
T KOG4199|consen 195 LQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-- 272 (461)
T ss_pred HHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH--
Confidence 423 3566665666677777776532 11 11111 22334444442 2255555555555543211
Q ss_pred hhHHHHhhhhH-----HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCchhH
Q 000159 436 KAAVLKVHKDY-----VPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMRPL 481 (2013)
Q Consensus 436 ~~~l~~~l~~l-----~p~l~k~l~Ds-~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2013)
....+.+ +..+..|+.|+ ...+|+.+.+|+..+-...|...+
T Consensus 273 ----~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv 320 (461)
T KOG4199|consen 273 ----DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV 320 (461)
T ss_pred ----HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch
Confidence 0111111 34688899994 558999999999999999998644
No 245
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=46.62 E-value=2.7e+02 Score=36.08 Aligned_cols=149 Identities=11% Similarity=0.136 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHh-----hhcch-hhhHhHHHHHHHHhccC---cHHHHHHHHHHHHHH
Q 000159 324 TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL-----RTHFS-GSSRFLLPVLLEKLKEK---KPTVAESLTQTLQAM 393 (2013)
Q Consensus 324 ~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L-----~~~f~-~~~~~llp~LL~klkdk---k~~V~~aa~~aL~ai 393 (2013)
.+++..|..+++ -..-+|++.++.++..|...- +..+. ..+..=++.+++.+.+. .+.+.+.+...-+.+
T Consensus 227 ~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L 306 (429)
T cd00256 227 LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEEL 306 (429)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 356666666666 445567888887777777632 11121 11222234555555443 234444443322222
Q ss_pred HHh--cCCChHhHHHHH-----------------------------------HHHhh-cCChHHHHHHHHHHHHHHHhcC
Q 000159 394 HKA--GCLNLVDVVEDV-----------------------------------KTSVK-NKVPLVRSLTLNWVTFCIETSS 435 (2013)
Q Consensus 394 ~~~--~~~~l~~il~~l-----------------------------------~~~l~-~Knp~vR~~~l~~L~~~l~~~~ 435 (2013)
-.+ .-++++....++ ..-|+ +.+|.+-.=+|.=++.++..+|
T Consensus 307 ~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P 386 (429)
T cd00256 307 KNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP 386 (429)
T ss_pred HHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc
Confidence 221 023344433333 22232 2334444444455555555554
Q ss_pred hh--HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000159 436 KA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 436 ~~--~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~ 474 (2013)
.. .+.+ +. .-..+++++++.|++||..|..|+..+|-
T Consensus 387 ~gr~i~~~-lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 387 RGKDVVEQ-LG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred cHHHHHHH-cC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22 1211 11 23468899999999999999999998874
No 246
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=46.55 E-value=28 Score=29.52 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=28.1
Q ss_pred hCCCCcChhHHHHhhhhhhcCCChHHHHHHHHHH
Q 000159 159 FGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192 (2013)
Q Consensus 159 fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~ 192 (2013)
..+.++.-..+++.+..-|.|.++.||++|..++
T Consensus 9 ~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 9 KDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred cCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4455666678999999999999999999998763
No 247
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=46.34 E-value=1.6e+02 Score=36.97 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=125.7
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCC--CCchHHHhh---hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhch--hhh
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITD--PKDNRIREL---GPLFKKTVADSNAPVQDKALDALIAYLKAADA--DAG 88 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d--~~~~~~~~~---~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~--~~~ 88 (2013)
+++..-.+.|-.|..++-.+++.|...+- ..+..|+.. ...++..+.|-.+.+-.+.++.+..++...=. .+.
T Consensus 398 leaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfs 477 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFS 477 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 45666789999999999999999976432 122233322 34556667777777777777766555433211 122
Q ss_pred hh-----HH-HHHHHHHHhhcCCChhHHHHH---HHHHHHHHhhhhhhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHH
Q 000159 89 RY-----AK-EVCDAIAAKCLTGRPKTVEKA---QAVFMLWVELEAVDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSE 158 (2013)
Q Consensus 89 ~~-----~~-~v~~~LveK~l~~k~~~k~~A---~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~ 158 (2013)
.+ +. .+|..+.-. .+.-..++..| ++.+-.|.|...-..|-+.|..-+ .+|.|.+...-...|...++.
T Consensus 478 kledahclehhfctlllpn-gdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkd 556 (666)
T KOG4825|consen 478 KLEDAHCLEHHFCTLLLPN-GDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKD 556 (666)
T ss_pred hhhHHHHHHHhhhhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHh
Confidence 22 11 222222222 22233444444 555566666544455556665544 488898888888888888888
Q ss_pred hCCC--CcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHh-----hCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000159 159 FGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRW-----IGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2013)
Q Consensus 159 fG~~--~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-----lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2013)
.|.. .+-..-..++-++...|.--.+|.+|...+..+|+. +|+++. ..+.++=+-...+..-+.|+++.|..
T Consensus 557 lgkGragfiediakkfgVpaeehglndkreaafaiicdmtrdhQarsIgedLm-pddskngriilvksefEgFAkiDgra 635 (666)
T KOG4825|consen 557 LGKGRAGFIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTRDHQARSIGEDLM-PDDSKNGRIILVKSEFEGFAKIDGRA 635 (666)
T ss_pred cCCCccchhHHHHHHhCCCccccchhHHHHhHhhhhhhhcccHHHHHHHhhcC-cccccCCceEEeHHHhhhhhhccCCC
Confidence 7763 222223344555667777788999999999988864 343311 11111112223344445566776655
Q ss_pred CCC
Q 000159 232 RPT 234 (2013)
Q Consensus 232 ~P~ 234 (2013)
.|+
T Consensus 636 nda 638 (666)
T KOG4825|consen 636 NDA 638 (666)
T ss_pred ChH
Confidence 553
No 248
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=46.20 E-value=5.4e+02 Score=30.61 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=47.3
Q ss_pred hHHHHHHhcccch--hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCC--------cHH----HHHHHHHHH
Q 000159 895 ELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN--------KKH----MRECTLTVL 960 (2013)
Q Consensus 895 eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~--------k~~----Vr~aa~~aL 960 (2013)
.++..|...+.+. ...+...+++++..|++.- + +|+..+++.+++.-.+. ... |+......|
T Consensus 114 ~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~R-P---~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l 189 (239)
T PF11935_consen 114 GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQR-P---QFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFL 189 (239)
T ss_dssp HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHS-G---GGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh-h---HHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHH
Confidence 3666666666554 4677788888888888553 3 34556677666544333 333 444444444
Q ss_pred HHHHHhcCchhhHHHHHHHHh
Q 000159 961 DAWLAAVHLDKMVPYVTTALT 981 (2013)
Q Consensus 961 ~~i~~~~gl~~ll~~l~~~L~ 981 (2013)
..+.++-....+-+.|..+|.
T Consensus 190 ~~llk~~~~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 190 LHLLKHPASSPFQGRITQALT 210 (239)
T ss_dssp HHHHTSGGGGGGHHHHHHHHH
T ss_pred HHHHCCCCchhhHHHHHHHHH
Confidence 444444444466667777776
No 249
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=46.19 E-value=6.7e+02 Score=31.07 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=67.0
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCchh-h---HHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc-
Q 000159 947 DNKKHMRECTLTVLDAWLAAVHLDK-M---VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM- 1021 (2013)
Q Consensus 947 D~k~~Vr~aa~~aL~~i~~~~gl~~-l---l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L- 1021 (2013)
|+..++|-.....+-+++..+++-. + +..+-..|++-+.+.....+++..+.+.+............+.-++..+
T Consensus 117 d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt 196 (378)
T KOG2753|consen 117 DKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYT 196 (378)
T ss_pred CCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhc
Confidence 4444599999999999999887422 2 3355666665544566778899999998877665333344444455554
Q ss_pred CCCChHHHHHHHHHHHHHHHHcC
Q 000159 1022 TDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 1022 ~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
+|-....|+.|.+|+...+.--.
T Consensus 197 ~dnas~AredA~rcV~~av~dP~ 219 (378)
T KOG2753|consen 197 EDNASEAREDAMRCVVEAVKDPK 219 (378)
T ss_pred ccchhHHHHHHHHHHHHHHcCCc
Confidence 55568899999999988775443
No 250
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=45.40 E-value=45 Score=36.95 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=79.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh----hh----hhhHHHHHH
Q 000159 63 DSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL----EA----VDVFLDVME 134 (2013)
Q Consensus 63 DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~----~~----~~~v~~~L~ 134 (2013)
.....+...++-++..+++..+..+.+.+.+.+..++++. .....-.+..++..+.-+ .+ .+.+.+.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~---~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEG---EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 3455566667777777776666656666666666666552 222333444444444332 11 367788888
Q ss_pred HHhh--cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcC-CChH-HHHHHHHHHH
Q 000159 135 KAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDH-QDQN-VRASSKGLTL 193 (2013)
Q Consensus 135 ~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~-~d~~-VR~~a~~l~~ 193 (2013)
+... .++.++..+++.+|..+...-.....-.+..+++|..++.+ .|.. ||..|.-.++
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 8877 88999999999999876543333333467788999999954 4455 6777655544
No 251
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=45.36 E-value=9.6e+02 Score=32.65 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=60.8
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccch---hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHH
Q 000159 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS---NKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2013)
Q Consensus 863 ~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds---N~~V~~~Al~~l~~La~alg~~~~~~~~~llp 939 (2013)
...+-..+.-+|..|+.+= ..+.+..|...+.+. ...++..|+..+..++ ..+-..+.+
T Consensus 500 ~~~~~~~~~~~LkaLgN~g-----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~-------~~~~~~v~~ 561 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLG-----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA-------KHCPEKVRE 561 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG-------GT-HHHHHH
T ss_pred hccCHHHHHHHHHHhhccC-----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHh-------hcCcHHHHH
Confidence 3445566666776666541 245677777766444 5667777776655442 122234444
Q ss_pred HHHHHhCCCc--HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHH
Q 000159 940 DILKCLGDNK--KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWL 997 (2013)
Q Consensus 940 ~ll~~L~D~k--~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L 997 (2013)
.++..+.|.. ..||-||.. .++..-+-..++..|...+...+ +.+++..+..+|
T Consensus 562 ~l~~I~~n~~e~~EvRiaA~~---~lm~~~P~~~~l~~i~~~l~~E~-~~QV~sfv~S~L 617 (618)
T PF01347_consen 562 ILLPIFMNTTEDPEVRIAAYL---ILMRCNPSPSVLQRIAQSLWNEP-SNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHH-TTS-HHHHHHHHH---HHHHT---HHHHHHHHHHHTT-S--HHHHHHHHHHH
T ss_pred HHHHHhcCCCCChhHHHHHHH---HHHhcCCCHHHHHHHHHHHhhCc-hHHHHHHHHHhc
Confidence 4555554433 348888643 33444344567777777776543 577777776665
No 252
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=45.19 E-value=86 Score=42.78 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=73.7
Q ss_pred HHHHHHHHHhc----ccCHHHHHHHHHHHHHHHHHhhhc----------chhhhHhHHHHHHHHhc----cCcHHHHHHH
Q 000159 325 EVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTH----------FSGSSRFLLPVLLEKLK----EKKPTVAESL 386 (2013)
Q Consensus 325 ~l~~~L~k~l~----D~N~~V~~~A~~~l~~La~~L~~~----------f~~~~~~llp~LL~klk----dkk~~V~~aa 386 (2013)
+++..+...++ ..+..+...|+-+++.|+...-.. .......+++.+...|+ .... +..
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~ 507 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDE---EEK 507 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-H---HHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCH---HHH
Confidence 45555544444 345568888889999998865443 33444555555555555 2222 333
Q ss_pred HHHHHHHHHhcCCChHhHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhc--CCCHHH
Q 000159 387 TQTLQAMHKAGCLNLVDVVEDVKTSVKNK---VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN--DGTPEV 461 (2013)
Q Consensus 387 ~~aL~ai~~~~~~~l~~il~~l~~~l~~K---np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~--Ds~~~V 461 (2013)
..+|.++-. .+...+++.+...+..+ ...+|..++..|.++...++ ..+.+.+.+.+. ..+++|
T Consensus 508 ~~~LkaLgN---~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~--------~~v~~~l~~I~~n~~e~~Ev 576 (618)
T PF01347_consen 508 IVYLKALGN---LGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP--------EKVREILLPIFMNTTEDPEV 576 (618)
T ss_dssp HHHHHHHHH---HT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H--------HHHHHHHHHHHH-TTS-HHH
T ss_pred HHHHHHhhc---cCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc--------HHHHHHHHHHhcCCCCChhH
Confidence 344555542 34567788887777655 57888888888776533332 233344555543 345789
Q ss_pred HHHHHHHH
Q 000159 462 RDAAFSVL 469 (2013)
Q Consensus 462 R~aA~~al 469 (2013)
|-||+..|
T Consensus 577 RiaA~~~l 584 (618)
T PF01347_consen 577 RIAAYLIL 584 (618)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997554
No 253
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=44.34 E-value=4.6e+02 Score=34.19 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=109.0
Q ss_pred CCCCccccccc---chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-----cchhHHHHHHH
Q 000159 844 GLPREDISGKF---TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMAT 915 (2013)
Q Consensus 844 ~lpr~dIs~~L---~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL-----~DsN~~V~~~A 915 (2013)
.+.+.||.+.+ ...|+..+.-..-.+=.--|..+..++.-....+.|. ...++..|...+ +.+|..-..-.
T Consensus 14 ~~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~-~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 14 RFSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPI-AVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp SS-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred eECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 45556665433 3344544432211222224555555555333455554 355555555443 56788888888
Q ss_pred HHHHHHHHHHhCh-h---hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---c----hhhHHHHHH-HHhcC
Q 000159 916 LITLGAVASAMGP-A---VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---L----DKMVPYVTT-ALTDA 983 (2013)
Q Consensus 916 l~~l~~La~alg~-~---~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g---l----~~ll~~l~~-~L~~~ 983 (2013)
.+.++.+.+.... + ...+-..++|.+...|...-....-.+.+-|..+++... + ..++|.+.. .+=..
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~ 172 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWER 172 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGS
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhcc
Confidence 8888888876543 2 235677889999999988877777888888888887654 2 233332221 11111
Q ss_pred CCChhhHHHHHHHHHHHhccCCC----CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000159 984 KLGAEGRKDLFDWLSKQLTGLSG----FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2013)
Q Consensus 984 k~~p~~R~~~l~~L~~~l~~~~~----~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2013)
..|. -.+...|..++...+. ...+..++--+-+++..+..| ..+...|..++.+++.+.+.++++
T Consensus 173 ~gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~ 241 (435)
T PF03378_consen 173 RGNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLK 241 (435)
T ss_dssp TTTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHH
T ss_pred CCCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHH
Confidence 1111 1112222222222111 223344444455677777666 668899999999999998888863
No 254
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=44.22 E-value=1e+03 Score=32.67 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=73.5
Q ss_pred HHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHH-hCCCCCC-----hh
Q 000159 684 LCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED-FGVSHLK-----LK 757 (2013)
Q Consensus 684 ~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~-fG~~~l~-----~k 757 (2013)
..+..+.+.-.|+-+|..|.+-+..+-+.-+.=.++-+++-. +.+++-++--|+..|.+.+.+ ++....+ -+
T Consensus 7 qav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~--~ts~d~vkf~clqtL~e~vrekyne~nl~elqlvR~ 84 (980)
T KOG2021|consen 7 QAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLIN--ETSNDLVKFYCLQTLIELVREKYNEANLNELQLVRF 84 (980)
T ss_pred HHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHh--hcccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 344445555556667888877777775543332333333322 348899999999999999975 3422221 14
Q ss_pred hHHHHHHhcCCCCC----cHhHHHHHHHHHHHHHHhhChhHHh-hhhh
Q 000159 758 DLIDFCKDTGLQSS----AAATRNATIKLLGALHKFVGPDIKG-FLAD 800 (2013)
Q Consensus 758 ~li~~l~~~gL~~~----n~~VR~aA~~ll~~Ly~~~G~~l~~-~L~~ 800 (2013)
.++.|++-.-+++. -+-+|..+.+++..|+.+.-++.++ |+.|
T Consensus 85 sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~d 132 (980)
T KOG2021|consen 85 SVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDD 132 (980)
T ss_pred HHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 57777754325555 3569999999999999888777653 4444
No 255
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=43.37 E-value=6.9e+02 Score=30.89 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=74.8
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCC----CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH--Hhhhcch
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAP----GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFS 361 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~----~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~--~L~~~f~ 361 (2013)
.|...+...+|.....|..-|..++. .+.... +.+..++..|...+...+..+...|++|++.|.+ ..|..|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 47777888999999999999999874 333222 2344455555554444555577888899988875 4455553
Q ss_pred hhhHhHHHHHHHHh----ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 362 GSSRFLLPVLLEKL----KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 362 ~~~~~llp~LL~kl----kdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
. ...++.++..+ ..++....+-.-.++-.++.- +.. +.+...+.+++ ....|..++..+.+.
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~-----~~~~~~~~~~~------~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL-SFE-----PEIAEELNKKY------LIPLLADILKDSIKE 254 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHHHH-TTS-----HHHHHHHHTTS------HHHHHHHHHHH--SH
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH-hcC-----HHHHHHHhccc------hHHHHHHHHHhcccc
Confidence 2 34444444444 233444444444444444432 222 22223333333 344444455544432
Q ss_pred HHHHhhhhHHHHHHHHhcCCCH
Q 000159 438 AVLKVHKDYVPICMECLNDGTP 459 (2013)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~ 459 (2013)
|.+...+-++..+++....
T Consensus 255 ---KvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 255 ---KVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp ---HHHHHHHHHHHHTTSSSST
T ss_pred ---hHHHHHHHHHHHHHhccHH
Confidence 3344555556666654443
No 256
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=41.79 E-value=6.3e+02 Score=31.46 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=54.4
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHH---HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 414 NKVPLVRSLTLNWVTFCIETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~---~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
+.-|..|.+-..+|..+.+.+....+. ...+.++..+.-++.+.+.+|-+.|.+++..+..-+..
T Consensus 131 ~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 456999999999999999887654332 45688999999999999999999999999988877655
No 257
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=40.13 E-value=6.9e+02 Score=29.75 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=46.0
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh
Q 000159 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (2013)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~ 413 (2013)
+.|.++.|+..++.|...+- |.+|..+... .-...++. .+..+-..|+.-+.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy---------------~~~~~~i~~~---------~~~~~~W~----~~~~lK~~Il~~~~ 53 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIY---------------PLVFRWICVN---------PSDEQLWE----SMNELKDRILSLWD 53 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHH---------------HHHHHHHS-----------HHHHHHHH----HHHHHHHHHHHGGG
T ss_pred CCCCcHHHHHHHHHHHHHHH---------------HHHHHHHcCC---------chHHHHHH----HHHHHHHHHHHHhc
Confidence 56788888888888887653 3344333111 11111221 12345566777788
Q ss_pred cCChHHHHHHHHHHHHHHHhc
Q 000159 414 NKVPLVRSLTLNWVTFCIETS 434 (2013)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~ 434 (2013)
+.||.+|..++.|+.+++-..
T Consensus 54 ~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999988643
No 258
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.40 E-value=1e+02 Score=42.84 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=49.8
Q ss_pred HHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000159 410 TSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2013)
Q Consensus 410 ~~l~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~ 476 (2013)
..|.+ ..|-+|+=++.-|.++.+....+.....-...-..+...|.|+-|+||.||.-||++|....
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 33444 35888887777777777777666554332344556888999999999999999999999863
No 259
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=39.29 E-value=6.3e+02 Score=29.89 Aligned_cols=115 Identities=10% Similarity=0.132 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh-cCChH
Q 000159 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NKVPL 418 (2013)
Q Consensus 341 V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~-~Knp~ 418 (2013)
+......++..++..... +...+++.+-.-+ ++..+.++..+.+++..++.+..+.+......|..-+. .+.|.
T Consensus 100 ~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~rp~ 175 (234)
T PF12530_consen 100 CLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDYRPL 175 (234)
T ss_pred HHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCccchH
Confidence 333334566666665443 7778888888888 88888999999999999997633333333334444343 45677
Q ss_pred HHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHHhcCCCH
Q 000159 419 VRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECLNDGTP 459 (2013)
Q Consensus 419 vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l~Ds~~ 459 (2013)
+=...+.|+..+-... ...........++..+-+.....+.
T Consensus 176 v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 176 VLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 7766777766432211 1223334456677777777776663
No 260
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=38.98 E-value=2e+02 Score=36.00 Aligned_cols=118 Identities=14% Similarity=0.268 Sum_probs=82.9
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHh-cCCCCC----CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc---
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLA-STKRIA----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF--- 360 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~pki~----~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f--- 360 (2013)
.|++-+...+...=-+|...+..++ .++.+. ..+|..++..+.+.|...|....+.+++.|++|-.. |..|
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm 246 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD-RSNFNVM 246 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc-hhHHHHH
Confidence 4556677788888888899888866 454443 368999999999999999999999999999998631 2222
Q ss_pred hhhh--HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000159 361 SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (2013)
Q Consensus 361 ~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l 408 (2013)
..|+ ..-+..++..++|+.+.|+-.|...+.-++.+ ....+.|...|
T Consensus 247 ~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~~~I~~iL 295 (335)
T PF08569_consen 247 TRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKPPPIVDIL 295 (335)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-BHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCChHHHHHH
Confidence 2443 35677788888888888888888888887776 33344555544
No 261
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=38.22 E-value=5.5e+02 Score=31.05 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=81.3
Q ss_pred HHHhcccchh----HHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH
Q 000159 899 GLRGRLYDSN----KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP 974 (2013)
Q Consensus 899 ~L~~rL~DsN----~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~ 974 (2013)
.+...+.+.+ ......+++.+..+|..-|. ....+.+...--+.+++.+..+++.+..--+.+..... -.++-
T Consensus 115 ~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~--~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~-~~~l~ 191 (262)
T PF14225_consen 115 RLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGL--PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHE-FQILT 191 (262)
T ss_pred HHHHHhcccccccccHHHHHHHHHHHHHHHhCCC--ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhH-HHHHH
Confidence 3334445555 13334555666666654332 23333333444456667777777665333333332222 23444
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHhccCCC-CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 975 ~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
.+...|.++ .+..|..++..|.-.++.... .+...+++.|+...|+.... ..|-+.|..++..-|
T Consensus 192 ~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 192 FLLGLLENG--PPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHhCC--cHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcc
Confidence 567777765 478999999999988887654 34557788999888876554 455566666665555
No 262
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=37.79 E-value=4.7e+02 Score=36.12 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=75.9
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-h
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-K 444 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~ 444 (2013)
.++..|++.+-.++.. .+++-++......-..++..|-..+. ++.-|..++.+|..++...+.- +.+.+ -
T Consensus 39 ~l~~~l~~y~~~t~s~------~~~~il~~~~~P~~K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~-l~~i~~t 109 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQ------RALEILVGVQEPHDKHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPW-LYKILQT 109 (668)
T ss_pred HHHHHHHHHHhhcCcH------HHHHHHHhcCCccHHHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCch-HHHHhcC
Confidence 4566677766555432 22233332211112456666666655 4688999999999999877653 22222 3
Q ss_pred hHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccH
Q 000159 445 DYVPICMECL-NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (2013)
Q Consensus 445 ~l~p~l~k~l-~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~ 490 (2013)
.+.+.|.+|| .|.+..|=..|.-+|..+.-++... +.+++..|-.
T Consensus 110 ~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~-l~~~L~~Lf~ 155 (668)
T PF04388_consen 110 PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS-LGPHLPDLFN 155 (668)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch-hhHHHHHHHH
Confidence 5666777776 6999999999999999999888864 6777776654
No 263
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.78 E-value=1.7e+03 Score=33.36 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=65.4
Q ss_pred cHHHHHhhh---cCCChhhHHHHHHHHHHHHHhhCCCcccc-cchHHHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHH
Q 000159 1292 TLPYILEGL---RSKNNRTRIECVDLVGFLIDHHGAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367 (2013)
Q Consensus 1292 vf~~l~~gl---~sKN~r~R~ecl~~l~~li~~~g~~~~~~-~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~ 1367 (2013)
++|++.+++ .+-+.+.|.-++..+..++.+.|-++..- +..+|.+|.++.|-|-+|-..+-..+-++=...|+.+|
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~ 1618 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQ 1618 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhh
Confidence 777766664 44455889999999999999999887433 45679999999999999999999988888889999998
Q ss_pred HHh
Q 000159 1368 RYV 1370 (2013)
Q Consensus 1368 ~~v 1370 (2013)
.|+
T Consensus 1619 ~y~ 1621 (1621)
T KOG1837|consen 1619 SYL 1621 (1621)
T ss_pred hcC
Confidence 874
No 264
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.75 E-value=1.5e+03 Score=32.80 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=96.1
Q ss_pred hhhHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhc
Q 000159 893 TGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAV 967 (2013)
Q Consensus 893 ~~eL~~~L~~rL----~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~ 967 (2013)
++.+.+.+.... -=+|..++.+|--+++.+...-. .|+..=+|.++..+. .+.+.||.-+..++..++-..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 455555554444 22357777777777776664332 445555677777776 677889999999999988776
Q ss_pred C--chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 968 H--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 968 g--l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
+ ++++-+.+..-|.+. ++.+|..++..|+-.+-+--- -++-.+.-...||.|.+++||.-|...+..+.
T Consensus 993 pnlie~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndmi--KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDMI--KVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccccchhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhhh--HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 5 688888899999887 689999999888765431100 11223334667999999999999995555443
No 265
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=37.66 E-value=4.3e+02 Score=28.77 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=67.1
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-----H
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----A 438 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~-----~ 438 (2013)
++.-+-.+|.+|--+++.+..++.=||+. ..--+++.+.|++-|+..+-..|...+.|+..+.+.+... .
T Consensus 6 ~r~~F~~~L~~L~aS~qSi~kaa~fAlk~-----~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSIQKAAQFALKN-----RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHc-----cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 56677788888888888888777777764 1223678999999999889999999999998866543221 1
Q ss_pred HHHhhhhHHHHHHHHhc-CCCH--HHHHHHHHHHHHHH
Q 000159 439 VLKVHKDYVPICMECLN-DGTP--EVRDAAFSVLAAIA 473 (2013)
Q Consensus 439 l~~~l~~l~p~l~k~l~-Ds~~--~VR~aA~~al~~l~ 473 (2013)
....++.-+|.++.+.- +.+. .=+..+++.|..+.
T Consensus 81 Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 81 YVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred hHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 22334444444444432 2222 23445555654444
No 266
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=36.16 E-value=1.5e+03 Score=32.30 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhccCCCCchHHH---hhhhhhH----hhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhH-HHHHHHHHH
Q 000159 29 NEANIDLAALCDSITDPKDNRIR---ELGPLFK----KTVADSNAPVQDKALDALIAYLKAADADAGRYA-KEVCDAIAA 100 (2013)
Q Consensus 29 ~~ayeeL~~~~~~~~d~~~~~~~---~~~~~~~----k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~-~~v~~~Lve 100 (2013)
+.|++.|.+.+.+.+|- ...|. ...+.|+ -+-.-..+.+|..+|+.+.....+..- ....+ ..++..|+.
T Consensus 1743 ~m~LtAL~Nli~~nPdl-asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C-v~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDL-ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC-VTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHhhCcch-hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH-HHHHHhhhHHHHHHH
Confidence 46788888888766542 11221 1223332 234466789999999988766544321 22221 124444444
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHH--------Hh-hcCChhhHHHHHHHHHHHHH--HhCCCCcChhHH
Q 000159 101 KCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK--------AI-KNKVAKAVVPAIDVMFQALS--EFGAKIIPPKRI 169 (2013)
Q Consensus 101 K~l~~k~~~k~~A~~~ll~~~E~~~~~~v~~~L~~--------~~-~~KnpKv~~~~l~~L~~~l~--~fG~~~i~~k~i 169 (2013)
- |.+-|..|+.+.+++-.+. ..++...+++.. .| ....+.+++++-..+..+.. ..|+++- -.+
T Consensus 1821 l-LHS~PS~R~~vL~vLYAL~--S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~--ITL 1895 (2235)
T KOG1789|consen 1821 L-LHSQPSMRARVLDVLYALS--SNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVT--ITL 1895 (2235)
T ss_pred H-HhcChHHHHHHHHHHHHHh--cCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCcee--eeh
Confidence 3 6678999999999876655 234434444332 22 34557777777777766543 4677641 246
Q ss_pred HHhhhhhhcC
Q 000159 170 LKMLPELFDH 179 (2013)
Q Consensus 170 l~~l~~ll~~ 179 (2013)
++.||..|-+
T Consensus 1896 ~kFLP~~f~d 1905 (2235)
T KOG1789|consen 1896 IKFLPEIFAD 1905 (2235)
T ss_pred HHhchHHHHH
Confidence 6777777665
No 267
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=35.32 E-value=3.8e+02 Score=29.63 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---C---CChHhHHHHHHHHhh-
Q 000159 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---C---LNLVDVVEDVKTSVK- 413 (2013)
Q Consensus 341 V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~---~---~~l~~il~~l~~~l~- 413 (2013)
++..|.-|+..+-..-+..|...+..++..++..-... -.-.+..++.+++... | ..-+.+++.+..-+.
T Consensus 21 ~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d---~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD---SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC---HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch---hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 55666666666556666777776666666666433322 2223444555554320 0 222566777777777
Q ss_pred -cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhc-CCCHH-HHHHHHHHHHH
Q 000159 414 -NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN-DGTPE-VRDAAFSVLAA 471 (2013)
Q Consensus 414 -~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~-Ds~~~-VR~aA~~al~~ 471 (2013)
.++..+...+++.|...- ..+..-.-..+.+++.|.+.+. +.+.. ||-.|.-+|..
T Consensus 98 ~~~~~~~~~~~lell~aAc--~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAAC--IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHT--TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 788888888888877542 2222222345788899999995 55455 78777766643
No 268
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.05 E-value=8.9e+02 Score=29.31 Aligned_cols=174 Identities=15% Similarity=0.170 Sum_probs=99.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCC--C----hHHHHHHHHHHhcccC----HHHHHHHHHHHHHHHHHhhhcchhhh
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPG--D----FTEVCRTLKKLITDVN----IAVAVEAIQAIGNLARGLRTHFSGSS 364 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~--~----~~~l~~~L~k~l~D~N----~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (2013)
.+.-|..=.+-+..|..+.+.+-+.++ . +...++.+...+.+.+ ..-+...+..|..+|+.- .....+
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--~~~~La 152 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--GLPNLA 152 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--CCccHH
Confidence 445565444444444433333333333 1 2233344444555555 134455557777777432 333455
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000159 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2013)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2013)
+.+-.-.-.++++++..+++.+.-.-++++.. .-..++-.+.+-+.++-+-+|..++..|..++...+-. .+.-.
T Consensus 153 ~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~---~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~--~~~~~ 227 (262)
T PF14225_consen 153 RILSSYAKGRFRDKDDFLSQVVSYLREAFFPD---HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR--SPHGA 227 (262)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC--CCcch
Confidence 55555556677777777776554444444321 12356677788888999999999999999999876422 11335
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
+++..+.+.+....- ..|.+.+..++.+-|.
T Consensus 228 dlispllrlL~t~~~---~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 228 DLISPLLRLLQTDLW---MEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHHHHhCCccH---HHHHHHHHHHHhhccc
Confidence 567777777765443 2366666666666554
No 269
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=34.81 E-value=2e+02 Score=30.75 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=42.4
Q ss_pred HhHHHHHHHHhhc---C-ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000159 402 VDVVEDVKTSVKN---K-VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2013)
Q Consensus 402 ~~il~~l~~~l~~---K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al 469 (2013)
+.+++.+...+.. . +..+...+++.+..++.-.+...+.. ..+++.+...+ .+++.|++|.+||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 3445555554542 2 27888889998888887444443322 45888999999 5555699999986
No 270
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=34.09 E-value=1.3e+02 Score=30.90 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=31.7
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 401 l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
.+.++-.+..+|.|=++.||..++.||.-+++.++..
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 3556777889999999999999999999999887654
No 271
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=33.92 E-value=50 Score=34.80 Aligned_cols=43 Identities=28% Similarity=0.184 Sum_probs=31.6
Q ss_pred hHHHHHHhhhchhhhhhcccCChhHHHHHHHHHHHhhChHHHhhccCCCCCChhHHHHHHHHHHHh
Q 000159 1640 DLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKL 1705 (2013)
Q Consensus 1640 eLv~KClwk~~k~l~~~~~~~~~~~il~~ih~fl~~~p~~~~~~r~~~~d~plRtvKtil~~l~k~ 1705 (2013)
.-||+-||... |.+ ..+||+++..- -|--.-||||+|..|||-
T Consensus 9 ~eVM~ilW~~~---~~t---------~~eI~~~l~~~-----------~ews~sTV~TLl~RL~KK 51 (123)
T COG3682 9 WEVMEILWSRG---PAT---------VREIIEELPAD-----------REWSYSTVKTLLNRLVKK 51 (123)
T ss_pred HHHHHHHHHcC---Ccc---------HHHHHHHHhhc-----------ccccHHHHHHHHHHHHhc
Confidence 45999999987 333 35678887762 144557999999999984
No 272
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.85 E-value=4e+02 Score=36.02 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=76.9
Q ss_pred hhHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHhChhh----HhhhhhHHHHHHHHhC----CCcHHHHHHHHHHHH
Q 000159 894 GELFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAV----EKSSKGVLSDILKCLG----DNKKHMRECTLTVLD 961 (2013)
Q Consensus 894 ~eL~~~L~~rL~D----sN~~V~~~Al~~l~~La~alg~~~----~~~~~~llp~ll~~L~----D~k~~Vr~aa~~aL~ 961 (2013)
.+++..|...+.+ .+..+...++-.++.++...-..- ......+++.+...|. +.....+..++.+|+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 5667666666643 356788888888888886332111 1112445555554443 344445555555555
Q ss_pred HHHHhcCchhhHHHHHHHHh-cCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHH
Q 000159 962 AWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (2013)
Q Consensus 962 ~i~~~~gl~~ll~~l~~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L 1036 (2013)
++|....++.+...+. +...++.+|..++.-|.+.....+. .+...+.+++.- .+.+.+||-+|...|
T Consensus 472 ----N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--~v~~~l~~i~~n-~~e~~EvRiaA~~~l 540 (574)
T smart00638 472 ----NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--KVQEVLLPIYLN-RAEPPEVRMAAVLVL 540 (574)
T ss_pred ----ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHcC-CCCChHHHHHHHHHH
Confidence 4566666666776665 3333567898888888754322211 223333333311 357789999987544
No 273
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=33.82 E-value=6.3e+02 Score=28.91 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=78.2
Q ss_pred CChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCC-----cHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHH
Q 000159 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-----NAPVQDKALDALIAYLKAADADAGRYAKEVCDA 97 (2013)
Q Consensus 23 k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds-----N~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~ 97 (2013)
|.=+.|..|..-|...+... ++.-|.+. ..+.+.++.... |.......+..+..++. ...|...++.+
T Consensus 19 KiDrvR~~A~~~l~~ll~~~-~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-----~~~y~~~ll~G 91 (193)
T PF12612_consen 19 KIDRVREVAGKCLQRLLHSQ-DPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD-----LPEYRYSLLSG 91 (193)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-----cHHHHHHHHhH
Confidence 33478999999999888432 22111111 223333332222 23334444444443332 23577789999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHH
Q 000159 98 IAAKCLTGRPKTVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSE 158 (2013)
Q Consensus 98 LveK~l~~k~~~k~~A~~~ll~~~E~-----~~~~~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~ 158 (2013)
||--+.|.-+.+...|...++.|+.- +..+.++..|..-+. .++.+++...+..+..++..
T Consensus 92 lv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 92 LVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 99886666678888888889999841 123566666666654 35678888888888777765
No 274
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=33.61 E-value=2.4e+03 Score=33.86 Aligned_cols=555 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred ccccCcchhhhhhhccCCHHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc
Q 000159 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH 359 (2013)
Q Consensus 281 Il~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~ 359 (2013)
+.+++. ..+...+.+.+|..=.-+...+..++ ......+.....-++.+..++++-.-.-...|.-.+..++.....-
T Consensus 90 ~~s~~~-n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~ 168 (2341)
T KOG0891|consen 90 NISRLA-NYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTF 168 (2341)
T ss_pred hhHhHH-HHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHH
Q ss_pred chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh------------------------------------
Q 000159 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------------------------------------ 403 (2013)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~------------------------------------ 403 (2013)
|-+++..++..++..+.+.++.++..+..+++++... .+-+.
T Consensus 169 ~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~--~~~~~~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e~ 246 (2341)
T KOG0891|consen 169 FYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSS--LAQREAKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNEL 246 (2341)
T ss_pred HHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhh--hhhccchhhhHHHHHHHHhccccccchHHHhhhHHHHHHHH
Q ss_pred -------------HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000159 404 -------------VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 470 (2013)
Q Consensus 404 -------------il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~ 470 (2013)
+-.....+-..|++.++......+..+....+...-..++...+..++..+- .+...++..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~~~~~~~~i~ 322 (2341)
T KOG0891|consen 247 LRISDPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILR----KEKTRAFVSIG 322 (2341)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhh----ccchhHHHHHH
Q ss_pred HHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 000159 471 AIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (2013)
Q Consensus 471 ~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 550 (2013)
.+.-.+|.. +.+++...+..-++-+
T Consensus 323 ~ia~al~~~-~~~~~~~~~~~i~~~~------------------------------------------------------ 347 (2341)
T KOG0891|consen 323 EIAVALGSS-MSPYLSNILDHIRQTL------------------------------------------------------ 347 (2341)
T ss_pred HHHHHhhhh-hhhhhcchhhhhhhcc------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHH-HHHHHHH
Q 000159 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAI-SSLRQQV 629 (2013)
Q Consensus 551 ~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~al-e~L~~~v 629 (2013)
....+...-.+..-..++..+.+..-..-...+ ..+...+
T Consensus 348 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~ 388 (2341)
T KOG0891|consen 348 ---------------------------------------PTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQM 388 (2341)
T ss_pred ---------------------------------------hhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHH
Q ss_pred HhccCcchHHHHHHHHHhcCCCCc-------------------------------------------ccHHHHHHHHHHH
Q 000159 630 EAVQNLDQSVEILVRLVCMLPGWS-------------------------------------------EKNVQVQQQVIEV 666 (2013)
Q Consensus 630 ~~~~~~~~~~~~lv~~L~~~pgl~-------------------------------------------DsN~qV~~~~Le~ 666 (2013)
..-...+.-.+.++....+.|.+. +.|.. .+.++.+
T Consensus 389 ~~~~~~~~l~e~l~~l~~rl~~l~~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~~~~~~~~~~~~-~~~a~~~ 467 (2341)
T KOG0891|consen 389 FKCTLSDSLLERLFILSQRIPKLGQSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKAILQKTGDSTDD-IQLAFKT 467 (2341)
T ss_pred hcCCchHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhCccccCccccCccchhcccchhhhhcccccHH-HHHHHHH
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhC-----------hhHHHHHHHHHhhhCCChhHH
Q 000159 667 INYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG-----------PGFIFERLYKIMKDHKNPKVL 735 (2013)
Q Consensus 667 l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~-----------~~~Vl~~L~~~l~~~KnpKv~ 735 (2013)
+..+......... .+..+++..++..-+..-+..+.-+...+.-... ...+++.++.....+.+|+++
T Consensus 468 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~ 546 (2341)
T KOG0891|consen 468 LGGFKFSGYSLTL-FVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIR 546 (2341)
T ss_pred HhhhhhhhhhHHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchh
Q ss_pred HHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhh
Q 000159 736 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2013)
Q Consensus 736 ~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2013)
...+..+. ..|-. .+.....+..+-.+ +.+.+=+++.+++..++-+......-+.++|......+...++-
T Consensus 547 ~~v~~~l~---~~~~~-~laQ~~~lr~~~~a-l~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~---- 617 (2341)
T KOG0891|consen 547 IRVLSSLN---ERFDA-QLAQPDLLRLLFIA-LHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEF---- 617 (2341)
T ss_pred hhHHhhhc---cchhh-hhcCchhHHHHHHH-hhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhh----
Q ss_pred CCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000159 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (2013)
Q Consensus 816 ~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~e 895 (2013)
..+. .+..+..+.+..++......+.+.. +.
T Consensus 618 --------------------------------------------sg~~----r~~~~~a~~~~~~i~~~~~~i~~~v-~~ 648 (2341)
T KOG0891|consen 618 --------------------------------------------SGMA----RTKEESAKLLCELIISSPVLISPYV-GP 648 (2341)
T ss_pred --------------------------------------------cchH----HhHHHHHHHhhHHHHHHHHHHHhhc-Cc
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcC------
Q 000159 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVH------ 968 (2013)
Q Consensus 896 L~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~g------ 968 (2013)
++..+...+.|....+...++.+++.|+...|..+..+++.+++.+.+.++| +...-|.++..++..+....|
T Consensus 649 ~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~ 728 (2341)
T KOG0891|consen 649 ILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPY 728 (2341)
T ss_pred hHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEeccc
Q ss_pred --chhhHHHHHHHHhcCCCChhhHHHHHHHH
Q 000159 969 --LDKMVPYVTTALTDAKLGAEGRKDLFDWL 997 (2013)
Q Consensus 969 --l~~ll~~l~~~L~~~k~~p~~R~~~l~~L 997 (2013)
.+.++..+...+.... ....|.+++.-+
T Consensus 729 ~~~P~ll~~l~~~~~te~-~~~ir~~~v~~~ 758 (2341)
T KOG0891|consen 729 LDYPELLDILINILKTEQ-SSTIRREAIRLL 758 (2341)
T ss_pred ccChHHHHHHHHHHhHhh-hhHHHHHHHHHh
No 275
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.12 E-value=2e+03 Score=32.77 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=55.0
Q ss_pred HhHHHHHHH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000159 402 VDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2013)
Q Consensus 402 ~~il~~l~~-~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~ 476 (2013)
..++.++.. ...+-+|.+|..++.|+...+=...-.......++|-..+...++|..-+||+.|.+||..+++.-
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence 456666653 334678999999999998766432111112334778888999999999999999999999998763
No 276
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=32.50 E-value=2.7e+02 Score=29.12 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=52.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2013)
.+|+.|..++..+.....-|++..-. ...+++.+...+..-.+.-|...+=.+..++.++.......+...+.|.
T Consensus 4 ~~L~~L~~s~~~I~~lt~~~~~~~~~-----a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~ 78 (121)
T smart00582 4 QKLESLNNSQESIQTLTKWAIEHASH-----AKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPV 78 (121)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHH
Confidence 35556666666676666666654332 2467777777666555556666555555556554322111112333333
Q ss_pred ----HHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 450 ----CMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 450 ----l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
+....+..++++|+.-.+.+...-
T Consensus 79 ~~~~~~~~~~~~~~~~~~ki~kll~iW~ 106 (121)
T smart00582 79 FQDALRDVLGAANDETKKKIRRLLNIWE 106 (121)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 333334444667766666664444
No 277
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=32.02 E-value=7.9e+02 Score=30.36 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=111.7
Q ss_pred CChhhhccCCChHHHHHHHHHHHHHhhcc------CCCCchH---HHhh---------hhhhHhhhcCCcHHHHHHHHHH
Q 000159 14 LPWEDRLLHKNWKVRNEANIDLAALCDSI------TDPKDNR---IREL---------GPLFKKTVADSNAPVQDKALDA 75 (2013)
Q Consensus 14 lpl~erl~~k~WK~R~~ayeeL~~~~~~~------~d~~~~~---~~~~---------~~~~~k~v~DsN~~vqe~~lea 75 (2013)
|...++..+-.-+.|..+.+|+.+.+... .++..|. ...+ ...+-+-+.|-+..+---++.+
T Consensus 23 l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~i 102 (342)
T KOG1566|consen 23 LKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQI 102 (342)
T ss_pred HhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHH
Confidence 44445544445677888899888887532 1222221 1111 1222234555555555555555
Q ss_pred HHHHHHHhchh---hhhh---HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHH---------HhhcC
Q 000159 76 LIAYLKAADAD---AGRY---AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK---------AIKNK 140 (2013)
Q Consensus 76 l~~~v~~~~~~---~~~~---~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~~~v~~~L~~---------~~~~K 140 (2013)
...++++.-.+ ...| -.+++..||.- ...+.+.|..|=.|+.|.-..+.+...++. -..--
T Consensus 103 fnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~----~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p 178 (342)
T KOG1566|consen 103 FNNLLRRQVGTRSPTVEYLETNPEILDNLVKG----YENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLP 178 (342)
T ss_pred HHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh----hccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhcc
Confidence 66666553111 1122 13555555543 333889999999999998777766666642 12456
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCc-----ChhHH-HHhhhhhhcCCChHHHHHHHHHHHHHH
Q 000159 141 VAKAVVPAIDVMFQALSEFGAKII-----PPKRI-LKMLPELFDHQDQNVRASSKGLTLELC 196 (2013)
Q Consensus 141 npKv~~~~l~~L~~~l~~fG~~~i-----~~k~i-l~~l~~ll~~~d~~VR~~a~~l~~ely 196 (2013)
+.++++.|++.+.+++..+-..+. +...+ -++--+++.+.|=-.|-.+..+++++|
T Consensus 179 ~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 179 NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 789999999999999988743221 23333 445778999999999999999999987
No 278
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=31.92 E-value=8.9e+02 Score=28.37 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHh
Q 000159 456 DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 456 Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
.=.++||++=.-++-.++.+.++..++-+...||..-|.-.++.++
T Consensus 168 ~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly~ 213 (223)
T PF10441_consen 168 TLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLYK 213 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHHH
Confidence 4568999999999999999999888888888899888877776654
No 279
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=31.51 E-value=1.1e+03 Score=29.49 Aligned_cols=202 Identities=13% Similarity=0.151 Sum_probs=120.3
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhc---CCCCCC-C----Ch-HHHHHHHHHHhcccCHHHHHHHHHHHHH------HHH
Q 000159 290 FWEGVKATKWSERKDAVAELTKLAS---TKRIAP-G----DF-TEVCRTLKKLITDVNIAVAVEAIQAIGN------LAR 354 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~---~pki~~-~----~~-~~l~~~L~k~l~D~N~~V~~~A~~~l~~------La~ 354 (2013)
+...+..-+|..|++...-...++. +.+..+ - .. .+++..|...-.+..+.+- +...|.+ +++
T Consensus 81 Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k~e~l~~ 158 (335)
T PF08569_consen 81 LIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIKHESLAK 158 (335)
T ss_dssp HHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSHHHHH
T ss_pred HHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHhhHHHHH
Confidence 4455677889999998888887773 222211 1 22 5677777777765554332 2222222 222
Q ss_pred HhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000159 355 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (2013)
Q Consensus 355 ~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~--------~~~l~~il~~l~~~l~~Knp~vR~~~l~~ 426 (2013)
-+-. ...+-.+++......=.|...+..++..++... ..+.+.++..+...+.+.|.-+|.+++.+
T Consensus 159 ~iL~------~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 159 IILY------SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHT------SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHhC------cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 1111 112223556666677778888888888766530 13456777777778889999999999999
Q ss_pred HHHHHHhc-ChhHHHHhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhc
Q 000159 427 VTFCIETS-SKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (2013)
Q Consensus 427 L~~~l~~~-~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~ 502 (2013)
|+.++..- .-....+++ ++-+..++.+|.|..+.+|-.|+..|-.|..- +.++ .+... +--.-|.++-+++.+
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~-~~I~~-iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKP-PPIVD-ILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-B-HHHHH-HHHHTHHHHHHHHHT
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCC-hHHHH-HHHHHHHHHHHHHHh
Confidence 99988642 222333443 56788999999999999999999888766544 3321 12222 222335566677655
No 280
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.50 E-value=3.1e+02 Score=38.49 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhh-hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000159 325 EVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 325 ~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~-~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~ 396 (2013)
+++..-...++| ...-++...|.|||.|-.... ..|...-..-.-.|+..+.|.-+.||.|+.-||.+++.+
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 344444455665 468889999999999876443 223222333445677788999999999999999999986
No 281
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.46 E-value=4.8e+02 Score=38.49 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=80.8
Q ss_pred cccchHHHHhc-----CCCChHHHHHHHHHHHHHHHhccccC-CCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Q 000159 852 GKFTPTLVKSL-----ESPDWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (2013)
Q Consensus 852 ~~L~~~ll~~l-----~d~~Wk~R~eale~l~~il~~a~~~I-~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~a 925 (2013)
..+.++++..+ .+..|++|...+.-++..+-. |..+ +...-.+|...+...++|....|+..|..++..|..+
T Consensus 1521 ~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~-n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~ 1599 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYS-NIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQG 1599 (1710)
T ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhc
Confidence 34445555433 355799999999999998863 3344 2223468888888999999999999999998887755
Q ss_pred hChhhHhhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC--chhhHHHHHHHHh
Q 000159 926 MGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH--LDKMVPYVTTALT 981 (2013)
Q Consensus 926 lg~~~~~~~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~ 981 (2013)
---.+.. +..-+.......-++. ..+.+|.-.|++++-..+ ++.++|.....|.
T Consensus 1600 s~~~~~~--~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls 1656 (1710)
T KOG1851|consen 1600 SKFQFVS--DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLS 1656 (1710)
T ss_pred cccccch--HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 3222211 1111222222233333 466777788888888876 3557776555554
No 282
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=31.28 E-value=65 Score=26.73 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=21.8
Q ss_pred HHHhhhhhhcCCChHHHHHHHHHHHHHH
Q 000159 169 ILKMLPELFDHQDQNVRASSKGLTLELC 196 (2013)
Q Consensus 169 il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (2013)
.++.|..++.+.|..||.+|...+..|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3677888888888888888887776653
No 283
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.04 E-value=1.7e+03 Score=31.33 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=69.0
Q ss_pred HHHHhhhcCCC-----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCccc--HHHHHHHHHHHHHHHHHHcCC
Q 000159 604 ADTVGQLKSAV-----WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEK--NVQVQQQVIEVINYLAATATK 676 (2013)
Q Consensus 604 ~~l~~~L~s~~-----Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~Ds--N~qV~~~~Le~l~~l~~~~~~ 676 (2013)
..+-+.+.+.+ |..=.+.+-.++.+.+.++... ...+.+.+...+..+=+ |.+....+.+.+..+...+++
T Consensus 465 ~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e 542 (982)
T KOG2022|consen 465 DTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE 542 (982)
T ss_pred HHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc
Confidence 44445556666 7665566666666655544332 23344444333344444 888888888888777765544
Q ss_pred CchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhC
Q 000159 677 FPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG 714 (2013)
Q Consensus 677 ~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~ 714 (2013)
. +..+...+|.|+.-++.+|....+...|..+|+-+.
T Consensus 543 ~-P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~ 579 (982)
T KOG2022|consen 543 H-PMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCP 579 (982)
T ss_pred C-CcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhh
Confidence 2 235677788999999888888888888888887653
No 284
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=31.03 E-value=5.5e+02 Score=33.46 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhhcchhhhHhHHHHHHHHhcc-----CcHHHHHHHHHHHHHHHHhcCCC-------h-HhHHHHHHHHhh
Q 000159 347 QAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-----KKPTVAESLTQTLQAMHKAGCLN-------L-VDVVEDVKTSVK 413 (2013)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~~llp~LL~klkd-----kk~~V~~aa~~aL~ai~~~~~~~-------l-~~il~~l~~~l~ 413 (2013)
+|+-.+...++....+++..+++.|...++. +|+.--.=..+++.+++++.|.. + +.++|.+..-|+
T Consensus 48 k~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq 127 (435)
T PF03378_consen 48 KCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQ 127 (435)
T ss_dssp HHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555554432 34445555666666666652211 2 234566666677
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
+.....=-++++.|+.+++.++...+.+....+.|.+ ...+++...+| -+....|.++.++-+.
T Consensus 128 ~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 128 QDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPS 192 (435)
T ss_dssp TT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCch
Confidence 7666677788999999999887444554445555444 56678777777 4444555555555443
No 285
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=31.03 E-value=61 Score=36.57 Aligned_cols=90 Identities=12% Similarity=0.234 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh-----cCChhhHHHHHHHHHHHHH-HhCC-CCcChhHHHHhhhhhhcC
Q 000159 107 PKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK-----NKVAKAVVPAIDVMFQALS-EFGA-KIIPPKRILKMLPELFDH 179 (2013)
Q Consensus 107 ~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~~-----~KnpKv~~~~l~~L~~~l~-~fG~-~~i~~k~il~~l~~ll~~ 179 (2013)
..+|.....-+-.|++.++.+.+++.|..... ........+|+.||..+++ .+|. .++.-..++..+...+..
T Consensus 90 v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 90 VSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred HHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 34455556666677776666666666543322 2345678899999987765 3665 345556788999999999
Q ss_pred CChHHHHHHHHHHHHHH
Q 000159 180 QDQNVRASSKGLTLELC 196 (2013)
Q Consensus 180 ~d~~VR~~a~~l~~ely 196 (2013)
.+..+|..+..++..+.
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998887653
No 286
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=30.97 E-value=4.6e+02 Score=27.08 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=42.6
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000159 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 470 (2013)
Q Consensus 402 ~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~ 470 (2013)
..++..+...++...|.-|...+=.+..++.++....-......+.+.+.......++.+|..-.+.+.
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456666667777777777777777777777766433221122333666666666777777765555553
No 287
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.31 E-value=6.4e+02 Score=34.08 Aligned_cols=121 Identities=20% Similarity=0.182 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhcc----CcHHHHHHHHHHHHHHHHhcCCCh--------HhHHHHHHHH
Q 000159 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE----KKPTVAESLTQTLQAMHKAGCLNL--------VDVVEDVKTS 411 (2013)
Q Consensus 344 ~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkd----kk~~V~~aa~~aL~ai~~~~~~~l--------~~il~~l~~~ 411 (2013)
.|.+++..+...++..= ..++..+++.++. +.+.++..+.-++.+++...|... ..+++.+...
T Consensus 375 ea~~~~~~~~~~~~~Pt----~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~ 450 (574)
T smart00638 375 EAAQLLAVLPHTARYPT----EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHEL 450 (574)
T ss_pred HHHHHHHHHHHhhhcCC----HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Confidence 44455555555443322 3344445554443 455788888888888886545432 3444444433
Q ss_pred hh----cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhCch
Q 000159 412 VK----NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN---DGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 412 l~----~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~---Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
++ .++...+.-.+..|++ .+ ++..++.+.+.+. +....+|-+|..+|..+.......
T Consensus 451 l~~~~~~~~~~~~~~~LkaLGN----~g-------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~ 514 (574)
T smart00638 451 LQQAVSKGDEEEIQLYLKALGN----AG-------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK 514 (574)
T ss_pred HHHHHhcCCchheeeHHHhhhc----cC-------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH
Confidence 32 3333333333333332 22 1333344444443 455689999999998776655543
No 288
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=29.92 E-value=2.8e+02 Score=29.62 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-----------hh----HHHHhhh
Q 000159 381 TVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-----------KA----AVLKVHK 444 (2013)
Q Consensus 381 ~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~-----------~~----~l~~~l~ 444 (2013)
.|+..+..++..++.+ .....+++++++...+++ ++......+.+|..+.+... .. .+....+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 4566666666666665 123445667777666655 45555556666655544321 01 1122345
Q ss_pred hHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhC
Q 000159 445 DYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 445 ~l~p~l~k~l~Ds~----~~VR~aA~~al~~l~~~~G 477 (2013)
.++..+.++++... .++...+.+|+..+...+.
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~ 118 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP 118 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC
Confidence 56666666665544 7888888888888776433
No 289
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=29.40 E-value=2.8e+02 Score=30.64 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=23.5
Q ss_pred hhhhHHH-HHhhcCCCChHHHHHHHHHHHH
Q 000159 1010 AAHLLKP-ASIAMTDKSSDVRKAAEACIVE 1038 (2013)
Q Consensus 1010 ~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~ 1038 (2013)
+..+..| |..+|.-+|+.||.+|...+..
T Consensus 116 L~rl~~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 116 LLRLYEPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHHHcCCCcchhccHHHHHHH
Confidence 3566777 7789999999999999877654
No 290
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.05 E-value=2.3e+02 Score=35.02 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=57.2
Q ss_pred hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 000159 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431 (2013)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~-----------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l 431 (2013)
|+..++ .+|+++ .++..+++.+...++.++...... .......++..+.+.++.+...++..|+.++
T Consensus 56 ~~~~~l-~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 56 YASLFL-NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333333 444444 455555666666666555441100 1113344555677889999999999999998
Q ss_pred HhcChhHHH---HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 432 ETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 432 ~~~~~~~l~---~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
...+..... ..++.++..+...+...+.++...|..||..+.+.
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 876543322 34555555666655556777888888888877644
No 291
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.05 E-value=4.1e+02 Score=29.51 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHHhc-C-CCCCCC----Ch-----HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhH
Q 000159 297 TKWSERKDAVAELTKLAS-T-KRIAPG----DF-----TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (2013)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~-~-pki~~~----~~-----~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (2013)
..+.-|.=+|+.|..++. + +.+... .+ ..++..|.+.+...+..+...+++++..+...++..+....+
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888887663 2 222211 12 345556666666555899999999999999999999999999
Q ss_pred hHHHHHHHHhccCcH---HHHHHHHHHHHHHHHh
Q 000159 366 FLLPVLLEKLKEKKP---TVAESLTQTLQAMHKA 396 (2013)
Q Consensus 366 ~llp~LL~klkdkk~---~V~~aa~~aL~ai~~~ 396 (2013)
.+++.++..+-+++. .-+..+-+++..++..
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 999999996655332 4556666777766653
No 292
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=28.66 E-value=4.6e+02 Score=36.82 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=50.5
Q ss_pred hhcCChHHHHHHHHHHHHHHHhcChhHHHHhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HHhCchhHHHHHhh
Q 000159 412 VKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLERSIEK 487 (2013)
Q Consensus 412 l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~--~~~Ge~~~~~~l~~ 487 (2013)
|-|..|..|+.++..|..+-.+ ++ .....+ ..++-.+--.++...+.+|.+|.+.|+.+. +..|.+..-.++.=
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~-~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSN-GQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcC-cH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 4488899999999999875432 21 111111 112333334456778999999999999887 55777643334443
Q ss_pred ccHHHHHHHH
Q 000159 488 LDDVRRNKLS 497 (2013)
Q Consensus 488 Ld~~~~kki~ 497 (2013)
|.+.-...++
T Consensus 1899 LP~~f~d~~R 1908 (2235)
T KOG1789|consen 1899 LPEIFADSLR 1908 (2235)
T ss_pred chHHHHHHHh
Confidence 4444333333
No 293
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=28.65 E-value=1.2e+03 Score=28.83 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=38.4
Q ss_pred ccHHHHHhhhcCCChhhHH-HHHHHHHHHHHhhCCCcccccch--HHHHHHhhcCCChHHHHHHHHHHHHH
Q 000159 1291 KTLPYILEGLRSKNNRTRI-ECVDLVGFLIDHHGAEISGQLKS--LQIVASLTAERDGEIRKAALNTLATG 1358 (2013)
Q Consensus 1291 kvf~~l~~gl~sKN~r~R~-ecl~~l~~li~~~g~~~~~~~k~--l~~ia~~i~drd~~VR~AAl~~l~~~ 1358 (2013)
++|..|.+-++++|+-+-. -++.-|+++++.+.-....-.|- =..|--+++..|+.||--||.++-++
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 3677777778888876311 12233444444332110000111 14566788999999999998877544
No 294
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=27.76 E-value=2.8e+02 Score=33.20 Aligned_cols=56 Identities=13% Similarity=0.278 Sum_probs=44.2
Q ss_pred HHHHhhh--cCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000159 1294 PYILEGL--RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1358 (2013)
Q Consensus 1294 ~~l~~gl--~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~ 1358 (2013)
|+|.++| ..-|+=+|-||++.||.+ +..++++.+....+|-++-||..+.-+|-..
T Consensus 221 ~~L~k~L~d~~E~pMVRhEaAeALGaI---------a~e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 221 PSLIKVLLDETEHPMVRHEAAEALGAI---------ADEDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHhh---------cCHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4444444 456788999999999986 5567889999999999999999887777543
No 295
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=27.54 E-value=8.2e+02 Score=31.03 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000159 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (2013)
Q Consensus 321 ~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~ 400 (2013)
++|..|+++.+.-.+ --+.|.+.|....+ .|-..+..-+-+-++.+-|-...||..|..-|--++.- ..
T Consensus 25 ~~y~~il~~~k~~~k-----~k~lasq~ip~~fk----~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~ 93 (460)
T KOG2213|consen 25 DDYEGILKAVKGTSK-----EKRLASQFIPRFFK----HFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DA 93 (460)
T ss_pred HHHHHHHHHhhcchH-----HHHHHHHHHHHHHh----hCchhhhHHHHhhhccccccchhhHHHHHhccchhccC--ch
Confidence 467776666555333 33445555555543 44455666666677777777777776665555544432 22
Q ss_pred hHhHHHHHHHHhh------------cCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCCCHH
Q 000159 401 LVDVVEDVKTSVK------------NKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPE 460 (2013)
Q Consensus 401 l~~il~~l~~~l~------------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~ 460 (2013)
+..+.+.+...|+ -..-++|.-++.||..-+-......+.+-+ ..++..+.+.|+|-..+
T Consensus 94 ~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge 166 (460)
T KOG2213|consen 94 LSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE 166 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH
Confidence 3333333322221 124578888888887666555444443222 34666677777776665
No 296
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=26.77 E-value=1.5e+03 Score=29.29 Aligned_cols=200 Identities=11% Similarity=0.044 Sum_probs=115.3
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCc
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~-----~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~ 678 (2013)
..++..+.|.|-++|..--.-|..+.......-. ....+++++- ....+......|+++..++..+..=.
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~-----e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIY-----ETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHH-----TTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-----CcccccCHHHHHHHHHHHHhccCCCC
Confidence 4577889999999999888888888776433211 1234455542 23344566778888888887543111
Q ss_pred hhhHHHHH-HHHHhhhcCh---hhhHHHHHHHHHHHhhhC--hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC
Q 000159 679 KKCVVLCL-LGISERVADI---KTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (2013)
Q Consensus 679 ~~~~~~il-~~LveKlgD~---K~r~~a~e~L~~l~e~~~--~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~ 752 (2013)
+.....++ ..|+--.... .-...-..|+..+++..+ ...++..+++.- -.-|+.-..-.++.+..+++.....
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W-P~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW-PKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS--SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC-CCCCchhHHHHHHHHHHHHHhcCHH
Confidence 22222233 2233222222 235667778888888643 345666666663 3445555666777777777654432
Q ss_pred CCC--hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhC
Q 000159 753 HLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (2013)
Q Consensus 753 ~l~--~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~ 816 (2013)
.+. ..++...+..+ +.+.+-.|-+.|.. -|..+.+...+.+-...++..|-..+.++
T Consensus 290 ~f~~i~~~lf~~la~c-i~S~h~qVAErAl~------~w~n~~~~~li~~~~~~i~p~i~~~L~~~ 348 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKC-ISSPHFQVAERALY------FWNNEYFLSLISQNSRVILPIIFPALYRN 348 (409)
T ss_dssp HHHHHHHHHHHHHHHH-HTSSSHHHHHHHHG------GGGSHHHHHHHHCTHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHH-hCCCCHHHHHHHHH------HHCCHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 221 24566777776 99999999877654 45666666666555555665555555443
No 297
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.71 E-value=2.7e+02 Score=40.83 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=60.9
Q ss_pred hCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 728 DHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 728 ~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
.+.+++.|.-++..+..++...|-..+ -+..+++++.++ ++|.+..|-..+..++..+-...|+.+..|+
T Consensus 1551 rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL-~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1551 RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAEL-MEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 356789999999999999999997654 357899999999 9999999999999999999999999887764
No 298
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=26.55 E-value=3.3e+02 Score=32.67 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (2013)
-+-.+++.|++..+..|..+.-+++.+-..+. +|.+.+.|.+.+-+|.+|.++...|.-. .-.+.+..
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~a----i~~L~k~L~d~~E~pMVRhEaAeALGaI--------a~e~~~~v 255 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAA----IPSLIKVLLDETEHPMVRHEAAEALGAI--------ADEDCVEV 255 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhh----hHHHHHHHHhhhcchHHHHHHHHHHHhh--------cCHHHHHH
Confidence 35566677777778888888888777655544 4566666665444689999988777532 11445555
Q ss_pred HHhhcCCCChHHHHHHHHHHHHH
Q 000159 1017 ASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 1017 l~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
|...++|...-||+.+.-+|..+
T Consensus 256 L~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHH
Confidence 77788999999999998887654
No 299
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=26.20 E-value=3.7e+02 Score=35.43 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc-CCCChHHHHHHHHHH
Q 000159 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACI 1036 (2013)
Q Consensus 958 ~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~L 1036 (2013)
+.++.+++|++...+++.+...+...+ +..+.+++.||.+ ..++.-++..| .+..+++..+|..+|
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs~d~--~~~~~~ilewL~~-----------q~LI~~Li~~L~p~~~~~~q~naa~~L 87 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLISTDK--PESPTGILEWLAE-----------QNLIPRLIDLLSPSYSSDVQSNAADFL 87 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHccCc--ccchHHHHHHHHH-----------hCHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 467888999999999999888887553 6789999999975 44566677766 577788999999999
Q ss_pred HHHHHHc
Q 000159 1037 VEILRAG 1043 (2013)
Q Consensus 1037 ~~l~~~~ 1043 (2013)
-+++...
T Consensus 88 ~aII~is 94 (475)
T PF04499_consen 88 KAIIRIS 94 (475)
T ss_pred HHHHHHh
Confidence 9887664
No 300
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=26.15 E-value=5.3e+02 Score=32.28 Aligned_cols=143 Identities=13% Similarity=0.203 Sum_probs=83.3
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh----H---HHHHHHHHHhhc--CCC--------hhHHHHHHHH
Q 000159 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY----A---KEVCDAIAAKCL--TGR--------PKTVEKAQAV 116 (2013)
Q Consensus 54 ~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~----~---~~v~~~LveK~l--~~k--------~~~k~~A~~~ 116 (2013)
...+-+.++.+....+..+|..|.+.+...+...++. + ...++.|...-- ..+ +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 4455567777778888888888888888443322221 1 123444442111 111 2889999999
Q ss_pred HHHHHhhhhhh---------hHHHHHHHHhhcCChhhHHHHHHHHHH-HHHHhCCCC-cCh----hHHHHhhhhhhcCCC
Q 000159 117 FMLWVELEAVD---------VFLDVMEKAIKNKVAKAVVPAIDVMFQ-ALSEFGAKI-IPP----KRILKMLPELFDHQD 181 (2013)
Q Consensus 117 ll~~~E~~~~~---------~v~~~L~~~~~~KnpKv~~~~l~~L~~-~l~~fG~~~-i~~----k~il~~l~~ll~~~d 181 (2013)
++.|.+...+. .++..+.+++..-.+.++...|.+|.+ ++.+=+.+- ... ...+..|..+++..+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 99999875442 335666777888888999999999975 555432211 000 124445555555544
Q ss_pred h----HHHHHHHHHHHHHH
Q 000159 182 Q----NVRASSKGLTLELC 196 (2013)
Q Consensus 182 ~----~VR~~a~~l~~ely 196 (2013)
+ .|++.+..++..+.
T Consensus 218 ~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALC 236 (330)
T ss_pred CcccchHHHHHHHHHHHHh
Confidence 4 44444444444444
No 301
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.23 E-value=1.9e+03 Score=30.14 Aligned_cols=92 Identities=18% Similarity=0.306 Sum_probs=59.8
Q ss_pred hhhcCCChhhHHHHHHHH-------HHHHHhhCCCcccccchHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCh----HH
Q 000159 1298 EGLRSKNNRTRIECVDLV-------GFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE----DI 1366 (2013)
Q Consensus 1298 ~gl~sKN~r~R~ecl~~l-------~~li~~~g~~~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~----~v 1366 (2013)
..|.+|++-.+ ||++-| -.++.+||..+-+....+..|+.++.+.|++.=.-=...+.++|-=+.. .|
T Consensus 550 ~~l~~kr~~~~-~~~~~i~~d~~~~~~~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~i 628 (667)
T KOG2286|consen 550 RALSKKRASIQ-ELIEKIKSDAETLYHFFRKYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAI 628 (667)
T ss_pred HHHHhhhhhHH-HHHHHHHhhHHHHHHHHHHhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHH
Confidence 34444444456 776544 4567778875544455679999999999988555555555555544443 35
Q ss_pred HHHhhcCCHHHHHhHHHHHHhhhh
Q 000159 1367 WRYVGKLTDAQKSMLDDRFKWKVR 1390 (2013)
Q Consensus 1367 ~~~vg~Ls~~~~s~l~er~kr~~~ 1390 (2013)
.+.=|+++.+++.-+-++++..-.
T Consensus 629 l~~R~dls~~~~k~i~~~~~~~~~ 652 (667)
T KOG2286|consen 629 LKIRGDLSRSEKKKIVDILKESMG 652 (667)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHh
Confidence 566678998888888888876533
No 302
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=25.16 E-value=9.3e+02 Score=26.54 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=59.3
Q ss_pred HHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHH-HHHHHHHHHHhhcCcchHHHHHHHh-hHHHHHHHHHhcCCCCCH
Q 000159 1174 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV-LDILLRWFVLQFCKSNTTCLLKVLE-FLPELFDTLRDEGYSLTE 1251 (2013)
Q Consensus 1174 ~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~-lDlllk~~~lr~~dtN~~vl~k~Le-~l~~l~~~l~~~~y~l~~ 1251 (2013)
.++..||+-+-.-.-+....|...+......++.+ .|++++- |...+........+ .|+.++..-....|..+-
T Consensus 18 ~fls~l~~~~~~~~~~~~~~i~~~~~~~~~~~le~y~ei~~~a----Wk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~ 93 (152)
T PF12422_consen 18 KFLSFLFSLSGIFIKKIHKLIKCQIPQVSKSVLELYGEILFRA----WKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLH 93 (152)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----hHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhH
Confidence 46667766333334444455555564445544443 4544443 55554444444443 355555544444333332
Q ss_pred HHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHHhhhcCCChhhHHHHHHHHHH
Q 000159 1252 SEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGF 1317 (2013)
Q Consensus 1252 ~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v~p~skvf~~l~~gl~sKN~r~R~ecl~~l~~ 1317 (2013)
.-...+|-++..+- .+..|.+++-.+.+ |+|-.+|++.|+++|.-++..+..
T Consensus 94 ~~~R~~L~~f~~~k------~~~~v~~mL~rl~~--------PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 94 SKFREVLLSFHSQK------KRKGVDEMLLRLYE--------PILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHhcc------cccchHHHHHHHHH--------HHHHHHHcCCCcchhccHHHHHHH
Confidence 32333333333321 22333333311111 344457788888887766655443
No 303
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=24.69 E-value=6.2e+02 Score=28.25 Aligned_cols=118 Identities=8% Similarity=0.141 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhccccCCC-CChhhHHHHHHhccc--chhHHHHHHHHHHHHHHHHHhChhhHhhh-hhHHHHHHHHhCC
Q 000159 872 ESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGD 947 (2013)
Q Consensus 872 eale~l~~il~~a~~~I~~-~~~~eL~~~L~~rL~--DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D 947 (2013)
-+|..+.++++. ..+.. .....++.-....++ -.+.+|.+.|+.++..++..-...+.... +.-++.++..|.+
T Consensus 36 ~~L~af~eLMeH--g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~ 113 (160)
T PF11841_consen 36 YALTAFVELMEH--GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQV 113 (160)
T ss_pred HHHHHHHHHHhc--CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc
Confidence 367777777763 33332 222334443433332 22678889999999999865322222221 4467899999999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHH
Q 000159 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2013)
Q Consensus 948 ~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2013)
+.+.++..+..-++++....+-++- ..+.+.|..+ +.|..++..
T Consensus 114 ~~~~iq~naiaLinAL~~kA~~~~r-~~i~~~l~~k----~~R~~I~~~ 157 (160)
T PF11841_consen 114 SNQEIQTNAIALINALFLKADDSKR-KEIAETLSQK----QIRQVILKN 157 (160)
T ss_pred CCHHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHH----HHHHHHHHc
Confidence 9999999999999999988864321 2455555543 346555543
No 304
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.20 E-value=3.3e+02 Score=28.83 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=60.7
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL---~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
+..++++|-.-..-|.+|.... .....+..++..|.+|| ..+++.++..||.++..|...-...|-..++.
T Consensus 10 eAT~~d~~gp~~~~l~eIa~~t------~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~ 83 (125)
T PF01417_consen 10 EATSNDPWGPPGKLLAEIAQLT------YNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRD 83 (125)
T ss_dssp HHTSSSSSS--HHHHHHHHHHT------TSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHH------hccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4456667866555555554332 22244689999999999 77899999999999999998887777655543
Q ss_pred HHHHHH--HHh--CCC-----cHHHHHHHHHHHHHH
Q 000159 937 VLSDIL--KCL--GDN-----KKHMRECTLTVLDAW 963 (2013)
Q Consensus 937 llp~ll--~~L--~D~-----k~~Vr~aa~~aL~~i 963 (2013)
-+..|- ..+ .|. ...||..|...++-+
T Consensus 84 ~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 84 HIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp THHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 333221 112 111 124888876665543
No 305
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=23.91 E-value=1.3e+03 Score=29.77 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=89.7
Q ss_pred HHHHHhcccC-hhhHHHHHHHHHHHHHHhhcCcch-----H--HHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHH
Q 000159 1192 EMLQKALPSI-RKDIIEVLDILLRWFVLQFCKSNT-----T--CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 1263 (2013)
Q Consensus 1192 ~~L~~~l~~~-~~~~i~~lDlllk~~~lr~~dtN~-----~--vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~ 1263 (2013)
..|.+.+.+. .+.++..+=.+|+= +.|+++ + ....++.=+...+..|.+.. ++|.+...=+-+|-+
T Consensus 244 ~~L~~Ivk~~~KEKV~Rivlai~~N----ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk--ysDEDL~~di~~L~e 317 (442)
T KOG2759|consen 244 QDLSDIVKESTKEKVTRIVLAIFRN----LLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK--YSDEDLVDDIEFLTE 317 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC--CCcHHHHHHHHHHHH
Confidence 3344444433 34455533334443 466663 1 12223333334455677665 678888888889988
Q ss_pred hhcCChHHH--H-HHHHHHHHHHhhccCcc------------------ccHHHHHhhhcCCC-hhhHHHHHHHHHHHHHh
Q 000159 1264 KSGHNIEKV--R-EKMRELTKQIVNFYSAT------------------KTLPYILEGLRSKN-NRTRIECVDLVGFLIDH 1321 (2013)
Q Consensus 1264 K~Gd~k~~v--r-~~v~~il~~i~~v~p~s------------------kvf~~l~~gl~sKN-~r~R~ecl~~l~~li~~ 1321 (2013)
+++++-... . +=..++.-..-.--|+- .++..|..-|+++| |..=.-+.--||..|+.
T Consensus 318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~ 397 (442)
T KOG2759|consen 318 KLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRH 397 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh
Confidence 887631110 0 11111111111111221 37777777788888 66655555667888888
Q ss_pred hCCC--cccccchHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000159 1322 HGAE--ISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1358 (2013)
Q Consensus 1322 ~g~~--~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~ 1358 (2013)
|.-. +-....+=..|=.++...|++||--||.|+-.+
T Consensus 398 yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 398 YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 7432 222222336677899999999999999887543
No 306
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.77 E-value=2.1e+03 Score=29.99 Aligned_cols=312 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCc------------------------------
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS------------------------------ 653 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~------------------------------ 653 (2013)
+.++.-|..+.-+.-+.|+..|..++-++---+.- +++|...|...
T Consensus 233 EtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRK----Lk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfiev 308 (988)
T KOG2038|consen 233 ETLLSSCKKKSKRDALQALPALKDLFINGLLPDRK----LKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEV 308 (988)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchh----hHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHH
Q ss_pred ------ccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChh--HHHHHHH
Q 000159 654 ------EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--FIFERLY 723 (2013)
Q Consensus 654 ------DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~--~Vl~~L~ 723 (2013)
|.-..|...+|.++..+...-|. .=..+|-.+|.|+||+ |+...|.-.|..+-...+.- .|+.++-
T Consensus 309 Le~lS~D~L~~vk~raL~ti~~lL~~kPE----qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EIe 384 (988)
T KOG2038|consen 309 LEELSKDPLEEVKKRALKTIYDLLTNKPE----QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEIE 384 (988)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHhCCcH----HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHHH
Q ss_pred HHhhh-CCChhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHHhcCCCCCcHhHH-------------------HHHH
Q 000159 724 KIMKD-HKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATR-------------------NATI 780 (2013)
Q Consensus 724 ~~l~~-~KnpKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~~~gL~~~n~~VR-------------------~aA~ 780 (2013)
+.++. +-+-+...-++.+|.+.+-.+.-..+. +.-+..+++++ +...+..=| +-..
T Consensus 385 r~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l-~~~~~~d~~k~~k~~~k~kks~k~~k~e~~~~ 463 (988)
T KOG2038|consen 385 RLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTL-VGKKDKDNRKDDKGAAKKKKSNKKDKKEEVST 463 (988)
T ss_pred HHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHH-HHhhhhhhhhcccchhhcccccccchhhhhcc
Q ss_pred HHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHH
Q 000159 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (2013)
Q Consensus 781 ~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~ 860 (2013)
.....+- ..+-++++..+...|.-.+... |+...=.+.|+.
T Consensus 464 e~~~e~n-----------srllSAlLTGvNRAfPfaq~~d----------------------------dk~~~~~~tLFk 504 (988)
T KOG2038|consen 464 ESPIELN-----------SRLLSALLTGVNRAFPFAQTAD----------------------------DKLEEQMKTLFK 504 (988)
T ss_pred cchhhhh-----------HHHHHHHHhcccccCCcccCch----------------------------HHHHHHhHHHHH
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhH-hhhhhHHH
Q 000159 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE-KSSKGVLS 939 (2013)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~-~~~~~llp 939 (2013)
..-..|+.+-..||-.|.++.. .+..+. .-.-.+|-.-|-|....-.......|+.|-.+|..+.. +-++.|+-
T Consensus 505 l~HssNFNTsVQaLmLlfQvs~-~~~~vS----DRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~ni~RV~AFvK 579 (988)
T KOG2038|consen 505 LTHSSNFNTSVQALMLLFQVSK-KNDYVS----DRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDINIQRVRAFVK 579 (988)
T ss_pred HHhhcccchhHHHHHHHHHHHH-hhhhhH----HHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000159 940 DILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
-+++.-.-+.+.....+.-.|..++...+
T Consensus 580 RlLQVa~~q~P~~i~G~l~Llsel~Karp 608 (988)
T KOG2038|consen 580 RLLQVAVQQQPPFICGILFLLSELLKARP 608 (988)
T ss_pred HHHHHHHhcCCchhHhHHHHHHHHHHhcc
No 307
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.75 E-value=2.5e+02 Score=27.84 Aligned_cols=68 Identities=9% Similarity=0.135 Sum_probs=55.4
Q ss_pred hhHHHHHHhccc-chhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000159 894 GELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (2013)
Q Consensus 894 ~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~ 961 (2013)
.+++..|...+. ..+..|+...++|+..|...-|..+..--+.++..+-....|....+...|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 467777777753 45788999999999999999998888777788888888888888888888877765
No 308
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.68 E-value=1.2e+03 Score=34.35 Aligned_cols=155 Identities=16% Similarity=0.142 Sum_probs=94.3
Q ss_pred CChHHHHHHHHHHh---cccCHHHHHHHH-HHHHHHHHH-hhh---c--------------------chhhhHhHHHHHH
Q 000159 321 GDFTEVCRTLKKLI---TDVNIAVAVEAI-QAIGNLARG-LRT---H--------------------FSGSSRFLLPVLL 372 (2013)
Q Consensus 321 ~~~~~l~~~L~k~l---~D~N~~V~~~A~-~~l~~La~~-L~~---~--------------------f~~~~~~llp~LL 372 (2013)
+.|..+++++.... .|.|+.....++ =.++...+. ++. + .+..+..++..|.
T Consensus 924 sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~ 1003 (1610)
T KOG1848|consen 924 SCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLA 1003 (1610)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHH
Confidence 45777777776544 388865544442 223332222 321 1 1334567888889
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh--cCCC---hHhHHHH-HHHHhh---c---CChHHHH----------HHHHHHHHH
Q 000159 373 EKLKEKKPTVAESLTQTLQAMHKA--GCLN---LVDVVED-VKTSVK---N---KVPLVRS----------LTLNWVTFC 430 (2013)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~ai~~~--~~~~---l~~il~~-l~~~l~---~---Knp~vR~----------~~l~~L~~~ 430 (2013)
+.+-|....||..|.+++=.++.. .|.+ .+.++-. |..-|. + +.|+.+. -++.-++++
T Consensus 1004 ~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1004 DLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 999999999999999998877754 1222 2333322 222222 2 2244333 244555555
Q ss_pred HHhcChh-----HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 431 IETSSKA-----AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 431 l~~~~~~-----~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
+..+-+. .+.+....++..+.+...|.++++.-+|..++.++..-
T Consensus 1084 f~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1084 FSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 5544332 23355678888899999999999999999999887643
No 309
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=23.62 E-value=72 Score=41.10 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=44.5
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
+..|...+..+.+|.+.+-+|.-|+++++.+.... +..|. .+-.+ +.|.|++||..|..++..|.
T Consensus 355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~---~vM~L-m~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQ---RVMRL-LNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHH---HHHHH-hcCCCHHHHHHHHHHHHHHH
Confidence 34444444456778888888888888888774321 12222 23445 89999999999999988763
No 310
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.50 E-value=1.7e+02 Score=33.76 Aligned_cols=91 Identities=22% Similarity=0.298 Sum_probs=70.3
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHh--cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH---hhhcchh
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLA--STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSG 362 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~--~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~---L~~~f~~ 362 (2013)
+-|++.+.+.+.--|.=|-+.+..|+ ...++.+- +..|+.-|+..+.-.|..|...++++|..|... .|...-|
T Consensus 117 p~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpV-LPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVP 195 (262)
T KOG3961|consen 117 PLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPV-LPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVP 195 (262)
T ss_pred HHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccc-cHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 36899999988888888888887755 35555553 678999999999977888888889999888763 5677889
Q ss_pred hhHhHHHHHHHHhccCcH
Q 000159 363 SSRFLLPVLLEKLKEKKP 380 (2013)
Q Consensus 363 ~~~~llp~LL~klkdkk~ 380 (2013)
|-++++|. +..+|.++.
T Consensus 196 fYRQlLp~-~n~~k~~n~ 212 (262)
T KOG3961|consen 196 FYRQLLPV-LNTFKNSNV 212 (262)
T ss_pred HHHHhhhh-hhhhccccc
Confidence 99999975 455666643
No 311
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=23.49 E-value=86 Score=32.67 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=29.6
Q ss_pred hhHHHHHHhhhchhhhhhcccCChhHHHHHHHHHHHhhChHHHhhccCCCCCChhHHHHHHHHHHHhhh
Q 000159 1639 SDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG 1707 (2013)
Q Consensus 1639 ~eLv~KClwk~~k~l~~~~~~~~~~~il~~ih~fl~~~p~~~~~~r~~~~d~plRtvKtil~~l~k~~g 1707 (2013)
..-||+|||+... +. ..+||+-|..- -+...-||+|+|..|++ +|
T Consensus 5 E~~IM~~lW~~~~-~t-----------~~eI~~~l~~~-----------~~~~~sTv~t~L~rL~~-Kg 49 (115)
T PF03965_consen 5 ELEIMEILWESGE-AT-----------VREIHEALPEE-----------RSWAYSTVQTLLNRLVE-KG 49 (115)
T ss_dssp HHHHHHHHHHHSS-EE-----------HHHHHHHHCTT-----------SS--HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhCCC-CC-----------HHHHHHHHHhc-----------cccchhHHHHHHHHHHh-CC
Confidence 4579999999864 21 23555555431 23466899999999998 44
No 312
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.16 E-value=9.2e+02 Score=32.22 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=88.6
Q ss_pred hccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHh-cCCCC--cccHHHHHHHHHHHHHHHHHHcC
Q 000159 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVC-MLPGW--SEKNVQVQQQVIEVINYLAATAT 675 (2013)
Q Consensus 599 ~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~-~~pgl--~DsN~qV~~~~Le~l~~l~~~~~ 675 (2013)
.+++..-++.+..+.+-..|..++..|..++...++ .++..+. +.-|| .|.|.+|......++..|..+.+
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~------yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p 346 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPD------YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIP 346 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchH------HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCC
Confidence 344555667888899999999999999998876432 2222221 11244 79999999999999999988754
Q ss_pred C--CchhhHHHHHHHHHhhh-cCh-hhhHHHHHHHHHHHhhhChh-----HHHHHHHHHhhhCCChhHHHHHHHHHHHHH
Q 000159 676 K--FPKKCVVLCLLGISERV-ADI-KTRAHAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (2013)
Q Consensus 676 ~--~~~~~~~~il~~LveKl-gD~-K~r~~a~e~L~~l~e~~~~~-----~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li 746 (2013)
. +.++.+...-..++|-+ .|. -+|..+.+.|..+.+...++ .|...++++. -.+-+++.+.+..++++.
T Consensus 347 ~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~~SeIlIvsscmlDi~--pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 347 HTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVLSSSEILIVSSCMLDII--PDSRENIVESVESICKID 424 (740)
T ss_pred cchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhcccchhHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHH
Confidence 3 22344555555555532 232 26778888877776643322 2222222221 223446888888887776
Q ss_pred HH
Q 000159 747 ED 748 (2013)
Q Consensus 747 ~~ 748 (2013)
.+
T Consensus 425 ae 426 (740)
T COG5537 425 AE 426 (740)
T ss_pred HH
Confidence 54
No 313
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=21.51 E-value=1.2e+03 Score=31.40 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=29.8
Q ss_pred cccchHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000159 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILG 1363 (2013)
Q Consensus 1328 ~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G 1363 (2013)
|..+.+..+...+.+.|.++|..|-.++...|.-..
T Consensus 141 Ge~~~l~~~~~~l~~~dr~~Rk~a~~a~~~~~~~~~ 176 (549)
T TIGR02289 141 GEEKTLSQLKPYLQDPNRSTRKKAWYARSEFFAVVE 176 (549)
T ss_pred CEeccHHHhhHHhhCCCHHHHHHHHHHHHHHHhcCc
Confidence 555678889999999999999999999988776543
No 314
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=21.08 E-value=4.3e+02 Score=27.94 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=46.9
Q ss_pred ChHhHHHHHHHHh---hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh-----c----CCCHHHHHHHHH
Q 000159 400 NLVDVVEDVKTSV---KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----N----DGTPEVRDAAFS 467 (2013)
Q Consensus 400 ~l~~il~~l~~~l---~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l-----~----Ds~~~VR~aA~~ 467 (2013)
.+..|++.|..-| ++++|.+..-+|..|..++.+.+...+. .+..-...+..+. + |....||+.|.+
T Consensus 36 ~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~-~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 36 DCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVD-ELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHH-HHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 3567888888888 7899999999999999988876654332 2222223333221 2 222359999998
Q ss_pred HHHHH
Q 000159 468 VLAAI 472 (2013)
Q Consensus 468 al~~l 472 (2013)
.+..+
T Consensus 115 i~~lL 119 (125)
T PF01417_consen 115 ILELL 119 (125)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88654
No 315
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.76 E-value=7.8e+02 Score=28.14 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=73.1
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC---ChHhHHHHHHHHhh-----cCChHHHHHHHHHHHHHHHh
Q 000159 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL---NLVDVVEDVKTSVK-----NKVPLVRSLTLNWVTFCIET 433 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~---~l~~il~~l~~~l~-----~Knp~vR~~~l~~L~~~l~~ 433 (2013)
.++..++..|+....||=..||..|..++..++.+... .++ -.+.|...+. +-+|..=.++...+..++.
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~- 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-
Confidence 45678888999999999999999999999999943111 011 1223333222 1234444444444443332
Q ss_pred cChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hCchhHHHHHhhc
Q 000159 434 SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS--VGMRPLERSIEKL 488 (2013)
Q Consensus 434 ~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~--~Ge~~~~~~l~~L 488 (2013)
+..+...++..++-..+.....+..+|..+|..++.- -+...+..++..|
T Consensus 81 -----~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l 132 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDL 132 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1133455666666667888888888888888888763 3333444444443
No 316
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=20.57 E-value=1.7e+03 Score=27.77 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHHHHHHHhcCCChHhH---HHHHHHHhhcCCh--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000159 378 KKPTVAESLTQTLQAMHKAGCLNLVDV---VEDVKTSVKNKVP--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (2013)
Q Consensus 378 kk~~V~~aa~~aL~ai~~~~~~~l~~i---l~~l~~~l~~Knp--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 452 (2013)
+...+|-.....+..+... |--...+ ++.+-.-+++=|+ .-+++.+.++.+.+..+.. .....+.+...|..
T Consensus 118 ~~~~aR~~Vy~~lv~la~~-~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~--~~~s~kvmt~lLgt 194 (378)
T KOG2753|consen 118 KPTPARYQVYMSLVTLAAS-CKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKS--VDESSKVMTELLGT 194 (378)
T ss_pred CCchHHHHHHHHHHHHHhh-cceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHHHHH
Confidence 3334888888888777765 3211222 2223333443333 3344667777777765543 11223445555555
Q ss_pred HhcCCCHHHHHHHHHHHHHHHH
Q 000159 453 CLNDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 453 ~l~Ds~~~VR~aA~~al~~l~~ 474 (2013)
.-+|-..+.|+.|.+|+..+.+
T Consensus 195 yt~dnas~AredA~rcV~~av~ 216 (378)
T KOG2753|consen 195 YTEDNASEAREDAMRCVVEAVK 216 (378)
T ss_pred hcccchhHHHHHHHHHHHHHHc
Confidence 5566678888888888876654
No 317
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=20.07 E-value=5.9e+02 Score=32.55 Aligned_cols=136 Identities=20% Similarity=0.199 Sum_probs=75.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHH-HHHHHHHHHHHHHHhc---CCCh--HhHHHHHH
Q 000159 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAG---CLNL--VDVVEDVK 409 (2013)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~-V~~aa~~aL~ai~~~~---~~~l--~~il~~l~ 409 (2013)
+....|+.+|.++++++-..-. .+..++.=+..++..-|+.++. ........|..+|+|+ |..+ ...++.++
T Consensus 193 n~et~vRve~~rlLEq~~~aeN--~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl 270 (832)
T KOG3678|consen 193 NLETSVRVEAARLLEQILVAEN--RDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVL 270 (832)
T ss_pred chhHHHHHHHHHHHHHHHhhhh--hhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchhe
Confidence 5555678888888887754322 2233444455666666666553 4445556677788771 1111 12233343
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 410 TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 410 ~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
--++-..|.+-..|...|..|+-+...+.--+. -+.+..-+..+....+.-.|-.|+-++.++.
T Consensus 271 ~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 271 YWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred eecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 334445577777777788887765432211111 1333444555555667778888887776665
Done!