Query 000159
Match_columns 2013
No_of_seqs 433 out of 1536
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 21:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 100.0 8.3E-56 2.8E-60 513.1 28.9 256 1130-1389 3-265 (266)
2 2qk1_A Protein STU2; STU2P, XM 100.0 1.9E-33 6.5E-38 330.4 29.5 231 270-502 2-248 (249)
3 4ffb_C Protein STU2; tubulin f 100.0 7.1E-34 2.4E-38 340.7 22.3 232 1-234 1-251 (278)
4 1u6g_C TIP120 protein, CAND1; 100.0 1.2E-24 4.1E-29 312.6 85.0 1022 15-1363 10-1188(1230)
5 1u6g_C TIP120 protein, CAND1; 100.0 5.6E-25 1.9E-29 316.0 72.5 968 94-1372 7-1047(1230)
6 2qk2_A LP04448P; mini spindles 100.0 1.2E-28 4.1E-33 289.2 23.9 230 271-503 2-234 (242)
7 4fdd_A Transportin-1; heat rep 99.9 1.3E-22 4.4E-27 280.7 71.4 771 18-1065 20-848 (852)
8 4fdd_A Transportin-1; heat rep 99.9 1.9E-21 6.4E-26 269.0 65.2 707 98-1045 18-788 (852)
9 2bpt_A Importin beta-1 subunit 99.9 2.5E-21 8.5E-26 267.7 66.1 733 18-1001 11-855 (861)
10 1b3u_A Protein (protein phosph 99.9 3E-23 1E-27 273.9 42.9 553 288-1039 13-585 (588)
11 2qk1_A Protein STU2; STU2P, XM 99.9 1.2E-24 4E-29 255.6 23.5 227 841-1070 4-249 (249)
12 1qgr_A Protein (importin beta 99.9 2.4E-20 8E-25 258.5 66.6 721 61-1041 10-871 (876)
13 2bpt_A Importin beta-1 subunit 99.9 1.7E-20 5.8E-25 259.4 64.8 702 19-967 103-859 (861)
14 2qk2_A LP04448P; mini spindles 99.9 4.2E-23 1.4E-27 241.9 23.9 228 842-1072 4-236 (242)
15 1qgr_A Protein (importin beta 99.9 3.1E-19 1.1E-23 247.3 66.2 727 18-998 8-867 (876)
16 1b3u_A Protein (protein phosph 99.9 2.1E-20 7.3E-25 246.6 50.2 561 95-963 12-585 (588)
17 2of3_A ZYG-9; multifunctional 99.9 5.4E-22 1.9E-26 230.3 24.9 218 592-816 37-264 (266)
18 4ffb_C Protein STU2; tubulin f 99.9 1.7E-22 6E-27 241.8 15.2 218 606-827 14-255 (278)
19 1ibr_B P95, importin beta-1 su 99.5 7.4E-11 2.5E-15 150.4 38.1 378 605-1046 5-442 (462)
20 1ibr_B P95, importin beta-1 su 99.4 1.1E-10 3.7E-15 148.8 35.3 381 17-479 7-442 (462)
21 2vgl_B AP-2 complex subunit be 99.3 5.1E-09 1.7E-13 138.5 38.6 479 360-1045 7-497 (591)
22 2vgl_B AP-2 complex subunit be 99.2 1.4E-08 4.6E-13 134.4 40.0 492 289-961 17-528 (591)
23 2iw3_A Elongation factor 3A; a 99.2 2.5E-10 8.5E-15 154.1 18.9 196 290-489 19-219 (986)
24 2jdq_A Importin alpha-1 subuni 99.2 4.9E-09 1.7E-13 133.2 29.9 391 8-473 12-442 (450)
25 1wa5_B Importin alpha subunit; 99.1 9.2E-09 3.2E-13 134.2 29.7 381 16-473 92-509 (530)
26 2x19_B Importin-13; nuclear tr 99.1 3.3E-05 1.1E-09 108.0 67.8 594 295-1052 35-724 (963)
27 2x1g_F Cadmus; transport prote 99.1 1.2E-06 4E-11 122.9 52.6 701 103-1042 17-859 (971)
28 2jdq_A Importin alpha-1 subuni 99.1 4E-09 1.4E-13 134.1 23.7 378 603-1040 22-442 (450)
29 2x19_B Importin-13; nuclear tr 99.1 4.6E-05 1.6E-09 106.6 65.1 353 611-1052 459-858 (963)
30 1wa5_B Importin alpha subunit; 99.0 3.6E-09 1.2E-13 138.1 21.5 379 603-1043 89-512 (530)
31 2x1g_F Cadmus; transport prote 99.0 1.6E-05 5.6E-10 111.3 59.7 604 296-1052 18-732 (971)
32 1w63_A Adapter-related protein 99.0 1E-06 3.5E-11 117.0 43.0 462 399-1039 66-575 (618)
33 4b8j_A Importin subunit alpha- 99.0 6.3E-08 2.1E-12 126.2 29.8 384 16-475 79-497 (528)
34 4b8j_A Importin subunit alpha- 99.0 1E-08 3.4E-13 133.8 21.8 379 604-1042 77-497 (528)
35 1w63_A Adapter-related protein 99.0 1.2E-06 4E-11 116.4 41.3 525 31-787 11-576 (618)
36 2z6g_A B-catenin; FULL-length, 99.0 8.5E-07 2.9E-11 120.9 40.7 501 322-1044 112-666 (780)
37 1wa5_C Importin alpha RE-expor 98.9 0.0001 3.5E-09 103.1 56.7 332 613-970 417-796 (960)
38 2z6g_A B-catenin; FULL-length, 98.9 2.4E-06 8.4E-11 116.3 39.0 518 289-968 119-666 (780)
39 1wa5_C Importin alpha RE-expor 98.8 6E-05 2E-09 105.4 49.4 538 295-1001 15-669 (960)
40 2iw3_A Elongation factor 3A; a 98.7 4.2E-07 1.4E-11 123.0 25.4 295 94-478 15-328 (986)
41 2z6h_A Catenin beta-1, beta-ca 98.7 9E-05 3.1E-09 98.9 45.8 469 363-1045 11-531 (644)
42 3now_A UNC-45 protein, SD10334 98.7 6.7E-05 2.3E-09 100.5 43.4 623 132-966 96-783 (810)
43 2z6h_A Catenin beta-1, beta-ca 98.7 1.5E-05 5.3E-10 106.3 36.0 487 327-968 16-530 (644)
44 3now_A UNC-45 protein, SD10334 98.6 6E-05 2E-09 101.0 41.1 606 295-1041 18-737 (810)
45 1jdh_A Beta-catenin; beta-cate 98.6 2.1E-05 7.3E-10 101.8 35.0 482 326-963 18-528 (529)
46 1jdh_A Beta-catenin; beta-cate 98.6 5.6E-05 1.9E-09 97.9 38.8 461 364-1039 15-528 (529)
47 3tpo_A Importin subunit alpha- 98.6 6.4E-06 2.2E-10 107.3 27.6 375 604-1039 79-495 (529)
48 3ul1_B Importin subunit alpha- 98.5 4.3E-06 1.5E-10 108.5 25.3 376 603-1039 59-476 (510)
49 3m1i_C Exportin-1; heat repeat 98.5 0.025 8.6E-07 79.7 64.7 510 294-946 25-642 (1049)
50 2vgl_A Adaptor protein complex 98.5 0.00029 1E-08 93.2 40.8 241 733-1045 308-554 (621)
51 3ul1_B Importin subunit alpha- 98.5 2.1E-05 7.1E-10 102.0 29.4 380 288-787 60-477 (510)
52 3tpo_A Importin subunit alpha- 98.5 3.1E-05 1.1E-09 100.8 30.1 377 288-787 79-496 (529)
53 3ltm_A Alpha-REP4; protein eng 98.4 4E-06 1.4E-10 95.0 18.4 182 855-1071 21-202 (211)
54 3ltj_A Alpharep-4; protein eng 98.4 5.1E-06 1.7E-10 93.4 18.7 177 854-1069 15-195 (201)
55 3ltm_A Alpha-REP4; protein eng 98.4 3.7E-06 1.3E-10 95.3 17.1 179 288-502 22-200 (211)
56 3m1i_C Exportin-1; heat repeat 98.4 0.039 1.3E-06 77.8 62.1 534 323-968 192-836 (1049)
57 1oyz_A Hypothetical protein YI 98.4 2.1E-05 7.2E-10 93.3 24.1 93 686-788 25-120 (280)
58 3ltj_A Alpharep-4; protein eng 98.4 4.4E-06 1.5E-10 94.0 17.2 149 288-472 17-165 (201)
59 1oyz_A Hypothetical protein YI 98.4 1.1E-05 3.9E-10 95.6 21.4 223 719-1039 25-248 (280)
60 3ibv_A Exportin-T; karyopherin 98.2 0.019 6.4E-07 79.8 49.2 581 300-1055 58-781 (980)
61 2vgl_A Adaptor protein complex 98.1 0.00012 4E-09 97.0 23.1 390 604-1037 38-466 (621)
62 4db6_A Armadillo repeat protei 98.1 2.2E-05 7.5E-10 88.6 13.8 185 288-473 15-208 (210)
63 4db8_A Armadillo-repeat protei 98.0 4.1E-05 1.4E-09 88.9 14.7 183 288-473 15-208 (252)
64 2db0_A 253AA long hypothetical 98.0 0.00047 1.6E-08 73.4 19.9 199 291-501 38-242 (253)
65 3ibv_A Exportin-T; karyopherin 97.9 0.025 8.5E-07 78.6 43.0 617 56-798 197-934 (980)
66 4hxt_A De novo protein OR329; 97.9 0.00015 5E-09 83.8 15.8 184 289-474 6-199 (252)
67 4hat_C Exportin-1; heat repeat 97.8 0.064 2.2E-06 74.6 44.4 198 299-501 430-646 (1023)
68 4hxt_A De novo protein OR329; 97.8 0.00041 1.4E-08 80.0 19.3 189 289-479 48-246 (252)
69 4db6_A Armadillo repeat protei 97.8 5.8E-05 2E-09 85.1 11.4 185 854-1040 13-208 (210)
70 4db8_A Armadillo-repeat protei 97.8 5.6E-05 1.9E-09 87.8 11.1 184 289-474 58-251 (252)
71 3b2a_A TON_1937, putative unch 97.5 0.0018 6.2E-08 72.2 16.3 180 857-1040 37-217 (265)
72 1xqr_A HSPBP1 protein; armadil 97.5 0.0013 4.4E-08 78.6 16.1 173 300-475 55-239 (296)
73 3b2a_A TON_1937, putative unch 97.3 0.004 1.4E-07 69.4 16.4 180 288-473 78-260 (265)
74 2db0_A 253AA long hypothetical 97.0 0.032 1.1E-06 59.7 19.0 189 1171-1388 33-226 (253)
75 1vsy_5 Proteasome activator BL 96.9 2 6.7E-05 59.4 40.3 171 300-478 148-369 (997)
76 1xqr_A HSPBP1 protein; armadil 96.9 0.0054 1.8E-07 73.3 13.4 169 868-1042 55-239 (296)
77 3l6x_A Catenin delta-1; cateni 96.9 0.57 2E-05 60.8 33.1 373 56-483 52-482 (584)
78 3oc3_A Helicase MOT1, MOT1; re 96.9 0.004 1.4E-07 76.9 11.9 146 288-473 177-327 (800)
79 1te4_A Conserved protein MTH18 96.8 0.00016 5.4E-09 75.6 -0.8 120 324-471 11-130 (131)
80 3a6p_A Exportin-5; exportin-5, 96.7 4.5 0.00015 57.5 48.4 202 866-1071 499-736 (1204)
81 3l6x_A Catenin delta-1; cateni 96.5 0.31 1.1E-05 63.2 26.8 347 638-1039 49-474 (584)
82 3opb_A SWI5-dependent HO expre 96.4 0.17 5.8E-06 66.9 23.5 364 604-1041 299-728 (778)
83 3tjz_B Coatomer subunit gamma; 96.3 0.066 2.3E-06 65.1 17.5 282 675-1036 59-348 (355)
84 1xm9_A Plakophilin 1; armadill 96.2 0.15 5.2E-06 64.7 21.3 381 639-1039 4-447 (457)
85 4hat_C Exportin-1; heat repeat 96.1 8.2 0.00028 53.7 56.7 173 895-1069 451-647 (1023)
86 1xm9_A Plakophilin 1; armadill 96.0 0.52 1.8E-05 59.7 24.7 386 57-472 7-447 (457)
87 3tjz_B Coatomer subunit gamma; 95.9 0.077 2.6E-06 64.5 15.7 187 270-474 16-205 (355)
88 4gmo_A Putative uncharacterize 95.8 1.9 6.3E-05 57.6 29.7 89 8-99 31-125 (684)
89 4ady_A RPN2, 26S proteasome re 95.6 0.74 2.5E-05 62.2 24.5 256 731-1040 450-718 (963)
90 1te4_A Conserved protein MTH18 95.5 0.01 3.6E-07 61.5 5.2 85 856-961 45-129 (131)
91 1vsy_5 Proteasome activator BL 95.0 1.2 4.3E-05 61.3 24.2 401 54-479 510-971 (997)
92 3nmw_A APC variant protein; AR 94.9 0.22 7.7E-06 60.8 15.0 189 289-478 131-338 (354)
93 3opb_A SWI5-dependent HO expre 94.5 19 0.00064 47.8 35.3 287 730-1041 306-635 (778)
94 4ady_A RPN2, 26S proteasome re 94.3 2.2 7.7E-05 57.6 23.3 156 295-472 369-535 (963)
95 3ldz_A STAM-1, signal transduc 94.3 0.3 1E-05 51.3 12.1 100 862-970 18-119 (140)
96 1x5b_A Signal transducing adap 94.2 0.45 1.5E-05 51.3 13.6 99 862-969 28-129 (163)
97 3grl_A General vesicular trans 93.9 2.3 7.8E-05 55.0 21.4 308 680-1040 17-393 (651)
98 1lrv_A LRV, leucine-rich repea 93.8 0.029 9.8E-07 64.9 3.5 187 723-1036 55-241 (244)
99 3gs3_A Symplekin, LD45768P; he 93.8 6.4 0.00022 45.5 23.2 127 300-432 30-173 (257)
100 3nmz_A APC variant protein; pr 93.7 0.59 2E-05 59.0 15.6 187 289-476 247-452 (458)
101 3oc3_A Helicase MOT1, MOT1; re 93.7 0.2 6.8E-06 62.3 10.4 159 869-1040 244-403 (800)
102 3a6p_A Exportin-5; exportin-5, 93.6 38 0.0013 48.1 49.7 129 298-433 26-163 (1204)
103 3g2s_A C-terminal fragment of 93.5 0.69 2.3E-05 49.0 13.2 99 862-969 24-130 (149)
104 3nmw_A APC variant protein; AR 93.2 0.64 2.2E-05 56.7 14.3 172 301-473 100-291 (354)
105 1mhq_A ADP-ribosylation factor 93.0 0.89 3E-05 48.2 13.0 111 862-981 14-132 (148)
106 1juq_A ADP-ribosylation factor 92.9 0.86 2.9E-05 49.5 13.1 110 863-981 27-144 (171)
107 3nmz_A APC variant protein; pr 92.9 0.69 2.4E-05 58.4 14.3 172 301-473 216-407 (458)
108 3gjx_A Exportin-1; transport, 92.7 32 0.0011 47.9 31.4 176 326-501 478-672 (1073)
109 3l9t_A Putative uncharacterize 91.3 1.1 3.9E-05 50.6 11.8 89 860-964 78-167 (240)
110 1elk_A Target of MYB1; superhe 91.0 1.7 5.7E-05 46.6 12.4 99 862-969 29-134 (157)
111 3o2t_A Symplekin; heat repeat, 90.5 10 0.00034 46.4 20.2 127 300-432 40-183 (386)
112 3g2s_A C-terminal fragment of 90.4 0.57 2E-05 49.6 8.1 104 96-201 13-130 (149)
113 3l9t_A Putative uncharacterize 89.0 2.7 9.2E-05 47.6 12.4 149 893-1054 69-219 (240)
114 3gs3_A Symplekin, LD45768P; he 88.9 23 0.00078 40.9 20.6 153 857-1040 19-172 (257)
115 1lrv_A LRV, leucine-rich repea 88.2 0.53 1.8E-05 54.3 6.3 65 860-960 177-241 (244)
116 3zyq_A Hepatocyte growth facto 88.1 3.7 0.00013 46.7 13.2 98 862-968 21-121 (226)
117 1juq_A ADP-ribosylation factor 88.0 0.91 3.1E-05 49.3 7.6 77 125-201 47-132 (171)
118 3o2t_A Symplekin; heat repeat, 87.8 15 0.0005 44.9 18.8 142 868-1040 40-182 (386)
119 1x5b_A Signal transducing adap 87.6 3.7 0.00013 44.1 12.1 81 399-479 48-130 (163)
120 1mhq_A ADP-ribosylation factor 86.3 2.2 7.4E-05 45.2 9.1 77 125-201 35-120 (148)
121 3ldz_A STAM-1, signal transduc 85.6 5 0.00017 41.9 11.5 96 294-396 18-115 (140)
122 3tt9_A Plakophilin-2; cell adh 84.0 8.8 0.0003 43.7 13.6 145 327-474 10-180 (233)
123 3rru_A TOM1L1 protein; structu 81.9 4.7 0.00016 42.8 9.4 99 862-969 29-134 (152)
124 1dvp_A HRS, hepatocyte growth 81.0 6.1 0.00021 44.6 10.7 98 862-968 18-118 (220)
125 3tt9_A Plakophilin-2; cell adh 79.6 7.2 0.00025 44.4 10.7 109 364-475 6-125 (233)
126 3u0r_A Apoptosis inhibitor 5; 79.5 9.8 0.00033 47.2 12.3 128 324-460 64-192 (507)
127 1upk_A MO25 protein; transfera 77.3 71 0.0024 38.0 18.2 202 289-502 82-308 (341)
128 3u0r_A Apoptosis inhibitor 5; 75.4 17 0.00059 45.1 12.8 146 867-1026 42-191 (507)
129 1elk_A Target of MYB1; superhe 75.0 26 0.0009 37.2 12.8 82 398-479 48-135 (157)
130 3gjx_A Exportin-1; transport, 74.8 2.8E+02 0.0094 38.6 60.9 170 298-475 74-276 (1073)
131 3zyq_A Hepatocyte growth facto 74.2 23 0.00079 40.0 12.9 82 398-479 40-123 (226)
132 4gmo_A Putative uncharacterize 73.2 4.5 0.00015 53.9 7.8 78 403-481 35-112 (684)
133 4atg_A TAF6; transcription, TF 72.0 41 0.0014 37.1 13.6 121 868-998 23-158 (196)
134 3rru_A TOM1L1 protein; structu 68.2 8.8 0.0003 40.7 7.1 106 94-201 16-134 (152)
135 1dvp_A HRS, hepatocyte growth 67.9 32 0.0011 38.7 12.2 95 294-395 18-115 (220)
136 3grl_A General vesicular trans 66.0 93 0.0032 40.4 17.0 169 293-485 29-204 (651)
137 4atg_A TAF6; transcription, TF 65.7 52 0.0018 36.2 12.7 132 604-744 14-159 (196)
138 1vdy_A Hypothetical protein (R 62.7 8.3 0.00029 40.1 5.4 88 305-396 31-131 (140)
139 1vdy_A Hypothetical protein (R 56.5 12 0.0004 39.1 5.2 100 861-965 19-130 (140)
140 3dad_A FH1/FH2 domain-containi 54.5 2.4E+02 0.0081 33.6 16.5 124 857-983 164-304 (339)
141 4flb_A Regulation of nuclear P 48.5 1E+02 0.0035 31.3 11.1 103 364-473 6-111 (132)
142 1sz9_A PCF11 protein; RNA poly 46.7 1.2E+02 0.0039 31.7 11.1 92 377-473 22-113 (144)
143 3dad_A FH1/FH2 domain-containi 45.1 4.6E+02 0.016 31.2 16.9 131 372-502 166-316 (339)
144 1w9c_A CRM1 protein, exportin 41.9 2.1E+02 0.0073 33.8 13.5 157 300-458 44-228 (321)
145 3fga_B Serine/threonine-protei 41.3 3.3E+02 0.011 33.3 15.4 186 290-486 134-327 (403)
146 1upk_A MO25 protein; transfera 40.1 1.2E+02 0.0041 36.1 10.9 118 289-408 168-295 (341)
147 3d9j_A RNA-binding protein 16; 39.5 1.1E+02 0.0039 31.8 9.7 113 370-483 9-130 (145)
148 1lsh_A Lipovitellin (LV-1N, LV 37.9 2.2E+02 0.0077 39.5 15.2 161 866-1044 408-579 (1056)
149 2jak_A Serine/threonine-protei 35.2 2.1E+02 0.0073 34.8 12.4 185 290-485 179-371 (392)
150 1ho8_A Vacuolar ATP synthase s 33.1 94 0.0032 38.8 9.0 59 415-475 417-477 (480)
151 1w9c_A CRM1 protein, exportin 31.8 5.3E+02 0.018 30.4 14.7 64 414-477 133-199 (321)
152 2npp_B PP2A, B subunit, serine 30.4 3.4E+02 0.011 33.7 13.3 186 290-486 167-360 (449)
153 3eg5_B Protein diaphanous homo 30.4 2.6E+02 0.0089 34.0 12.4 51 381-432 135-191 (383)
154 4fu3_A Regulation of nuclear P 25.2 2E+02 0.0068 29.2 8.7 66 364-434 5-70 (135)
155 1ho8_A Vacuolar ATP synthase s 24.0 2.3E+02 0.0077 35.5 10.1 79 886-966 387-477 (480)
156 1c7c_A Protein (deoxyhemoglobi 23.9 8.6E+02 0.029 27.8 15.7 35 443-477 244-279 (283)
157 1lsh_A Lipovitellin (LV-1N, LV 23.5 1.6E+03 0.055 30.9 23.3 122 857-1000 444-574 (1056)
158 1sz9_A PCF11 protein; RNA poly 22.1 4.4E+02 0.015 27.2 10.5 39 124-162 39-77 (144)
159 2nsz_A Programmed cell death p 21.1 4E+02 0.014 26.9 9.8 86 342-433 23-115 (129)
160 2km4_A Regulator of TY1 transp 21.0 3.1E+02 0.011 28.3 9.1 104 365-473 5-114 (142)
161 2ion_A PDCD4, programmed cell 20.9 3.8E+02 0.013 28.1 9.8 86 342-433 25-117 (152)
162 2rg8_A Programmed cell death p 20.3 2.8E+02 0.0095 29.5 8.7 85 342-433 26-116 (165)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=100.00 E-value=8.3e-56 Score=513.12 Aligned_cols=256 Identities=28% Similarity=0.572 Sum_probs=247.0
Q ss_pred hhcccCCCChHHHhh----hhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhH
Q 000159 1130 ALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDI 1205 (2013)
Q Consensus 1130 ~~~~~~~~~k~~R~~----~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~ 1205 (2013)
|++. .+++|++|++ +++++|+|++||+|++++|++||.++++++++.+|||+||++|++|+++|++.++++++++
T Consensus 3 ~~l~-~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~ 81 (266)
T 2of3_A 3 LLLS-DNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSL 81 (266)
T ss_dssp CSBC-CSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred Ccee-cCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHH
Confidence 4443 3788999984 5578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhh
Q 000159 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN 1285 (2013)
Q Consensus 1206 i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~ 1285 (2013)
++++|++|||+++||+|+|++|++++||+|..+|..|.+.+|+|+++|+.+|||+|++|+||+||.||+.++++++.++.
T Consensus 82 ~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 82 LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH---HHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000159 1286 FYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKIL 1362 (2013)
Q Consensus 1286 v~p~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l---~~ia~~i~drd~~VR~AAl~~l~~~y~~~ 1362 (2013)
+||++++|+|+++|++|||+|+|+||+++|+++|++||+. +.|++ +.|+++++|+|++||+||+||++++|.++
T Consensus 162 v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 162 VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999996 67888 99999999999999999999999999999
Q ss_pred ChHHHHHhhcCCHHHHHhHHHHHHhhh
Q 000159 1363 GEDIWRYVGKLTDAQKSMLDDRFKWKV 1389 (2013)
Q Consensus 1363 G~~v~~~vg~Ls~~~~s~l~er~kr~~ 1389 (2013)
||.||+++|+|++++++||+|||||++
T Consensus 239 Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 239 GDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp TTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999974
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=330.39 Aligned_cols=231 Identities=24% Similarity=0.435 Sum_probs=219.6
Q ss_pred CCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHH-Hh-cCCCCC--CCChHHHHHHHHHHh-cccCHHHHHH
Q 000159 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (2013)
Q Consensus 270 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~-l~-~~pki~--~~~~~~l~~~L~k~l-~D~N~~V~~~ 344 (2013)
.|+||++|||||++|+| ++|++.+.++||++|++|++.|.. ++ +++++. .++|.++++.|++.+ +|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~-~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLP-KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCC-hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 47899999999999999 699999999999999999999999 87 678888 689999999999999 6999999999
Q ss_pred HHHHHHHHHHHhh-hcch-hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC------CChHhHHHHHHHHhhcCC
Q 000159 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (2013)
Q Consensus 345 A~~~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~------~~l~~il~~l~~~l~~Kn 416 (2013)
|++||+.|+++++ +.|. +|+..++|.++++++|+|+.|++++..|+++++.+ + ..++.+++.|..+++|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999998 4 238999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCh--hHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHH
Q 000159 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (2013)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~--~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~ 493 (2013)
|++|.+++.||.+++..++. ..+.+++ +.++|.+.++++|++++||++|.+|++++++++|++.+.+|++.||+.++
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998875 5677889 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000159 494 NKLSEMIAG 502 (2013)
Q Consensus 494 kki~e~~~~ 502 (2013)
++|++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999875
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-34 Score=340.73 Aligned_cols=232 Identities=25% Similarity=0.388 Sum_probs=183.4
Q ss_pred CChHHhhhhhhcCCChhhhccCCChHHHHHHHHHHHHHhhccCCC--Cc---hHHHhhhhhhHhhhcCCcHHHHHHHHHH
Q 000159 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KD---NRIRELGPLFKKTVADSNAPVQDKALDA 75 (2013)
Q Consensus 1 m~~~~~~~~~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~--~~---~~~~~~~~~~~k~v~DsN~~vqe~~lea 75 (2013)
|++|++ .||++|||+|||.||+||.|++||++|.+.|...... .+ ..|..+.+++++++.|+|+.||++|+++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 777553 4999999999999999999999999999999865332 12 2366778899999999999999999999
Q ss_pred HHHHHHHhchhh------hhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh-hhhHHHHHHHHhhcCChhhHHH
Q 000159 76 LIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA-VDVFLDVMEKAIKNKVAKAVVP 147 (2013)
Q Consensus 76 l~~~v~~~~~~~------~~~~~~v~~~LveK~l~-~k~~~k~~A~~~ll~~~E~~~-~~~v~~~L~~~~~~KnpKv~~~ 147 (2013)
+..|++..+... ..++..+++.|++||++ +|+++|+.|.++++.++|... .+.+++.|..++.|||||++.+
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHH
Confidence 999998865432 23467899999999988 799999999999999999865 4778899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcChhH----HHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCch--hhHHHhhhChHHHHHHHH
Q 000159 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP--VKTILFEKMRDTMKKELE 221 (2013)
Q Consensus 148 ~l~~L~~~l~~fG~~~i~~k~----il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~--l~~~l~~~Lk~~q~keLe 221 (2013)
|+.||.+++.+||.+++++++ +++.++++|+|+|++||++|+.+++++|+|+|+.. +...++++|||+|+++|+
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHH
Confidence 999999999999999998765 66788899999999999999999999999999742 223445899999999999
Q ss_pred HHHHhcCCCCCCC
Q 000159 222 VELVNVSGTARPT 234 (2013)
Q Consensus 222 ~~f~k~~~~~~P~ 234 (2013)
++|+++.+.++|+
T Consensus 239 ~~f~k~~~~~~~~ 251 (278)
T 4ffb_C 239 KLFAKVGDEPSSS 251 (278)
T ss_dssp HHHSCCCC-----
T ss_pred HHHHhcCCCCCCC
Confidence 9999998765444
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.97 E-value=1.2e-24 Score=312.61 Aligned_cols=1022 Identities=14% Similarity=0.135 Sum_probs=654.8
Q ss_pred ChhhhccCCChHHHHHHHHHHHHHhhccCCCCch-HHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000159 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDN-RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (2013)
Q Consensus 15 pl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~-~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~ 93 (2013)
.+-+++.+.+...|.+|.++|.+.++...-..++ ....+...+.+++.|.|..++..|+.++..+++..+. .+...
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 3678899999999999999999988643111122 2445566677788999999999999999998877654 45667
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh------------hhhHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhC
Q 000159 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA------------VDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFG 160 (2013)
Q Consensus 94 v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~------------~~~v~~~L~~~~~-~KnpKv~~~~l~~L~~~l~~fG 160 (2013)
+++.|++......+.+|..|..++-.+++.-. ...++..|..++. +.++.++.+++.+|.+++..+|
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 88888876444678899999888887776522 3466777778887 6899999999999999999999
Q ss_pred CCCcC-hhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchh
Q 000159 161 AKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRA 239 (2013)
Q Consensus 161 ~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs 239 (2013)
....+ ...+++.+.+.|.|.+..||..|...+..+....++..+ ..+-+..++-|.. -.. .. .|.
T Consensus 167 ~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~-----~~~l~~l~~~L~~----~~~--~~---~r~ 232 (1230)
T 1u6g_C 167 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-----VDLIEHLLSELSK----NDS--MS---TTR 232 (1230)
T ss_dssp SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-----TTHHHHHHHHHHH----TCS--SC---SCT
T ss_pred hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHhcc----CCc--hh---HHH
Confidence 86544 467999999999999999999999999999988876422 2211222222211 111 11 121
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcC-CCC
Q 000159 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI 318 (2013)
Q Consensus 240 ~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-pki 318 (2013)
..-.... . -....| ..+.+| .+ +| - +.+...+.+.++..|..++..+..++.. +.-
T Consensus 233 ~a~~~l~-~-l~~~~~------------~~~~~~--l~--~l----~-~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 233 TYIQCIA-A-ISRQAG------------HRIGEY--LE--KI----I-PLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp THHHHHH-H-HHHHSS------------GGGTTS--CT--TH----H-HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHH-H-HHHHhH------------HHHHHH--HH--HH----H-HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 1110000 0 000000 012222 11 12 1 3456666778888899999888887742 211
Q ss_pred CCCChHHHHHHHHHHhc-------------------------------------ccCHHHHHHHHHHHHHHHHHhhhcch
Q 000159 319 APGDFTEVCRTLKKLIT-------------------------------------DVNIAVAVEAIQAIGNLARGLRTHFS 361 (2013)
Q Consensus 319 ~~~~~~~l~~~L~k~l~-------------------------------------D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (2013)
....+..+++.+.+.+. |..-.|+..|+.+++.++...+..|.
T Consensus 290 ~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 290 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 11112344554444332 22335788999999999997776799
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC-----------------------ChHhHHHHHHHHhhcCChH
Q 000159 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----------------------NLVDVVEDVKTSVKNKVPL 418 (2013)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~-----------------------~l~~il~~l~~~l~~Knp~ 418 (2013)
+|...++|.++..++|....||.++..++..++..... .++.+++.+...+++.+|.
T Consensus 370 ~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 449 (1230)
T 1u6g_C 370 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 449 (1230)
T ss_dssp HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHH
Confidence 99999999999999999999999999999888864100 1234455555568999999
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHH
Q 000159 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2013)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki 496 (2013)
+|..++..|..++...+ ..+..++..++|.+...+.|.++ +||..+..+++.+....|.+.+.++++.+-
T Consensus 450 vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~ll------- 521 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV------- 521 (1230)
T ss_dssp HHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTH-------
T ss_pred HHHHHHHHHHHHHHHch-hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHH-------
Confidence 99999999999888754 33456789999999999999975 899998888887776655443443332221
Q ss_pred HHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCc
Q 000159 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (2013)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~ 576 (2013)
T Consensus 522 -------------------------------------------------------------------------------- 521 (1230)
T 1u6g_C 522 -------------------------------------------------------------------------------- 521 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccC--------cchHHHHHHHHHhc
Q 000159 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--------LDQSVEILVRLVCM 648 (2013)
Q Consensus 577 ~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--------~~~~~~~lv~~L~~ 648 (2013)
+.++..+.+.+|+.|.+++..+..+++..++ ..++.+.++..+..
T Consensus 522 ---------------------------p~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 574 (1230)
T 1u6g_C 522 ---------------------------PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 574 (1230)
T ss_dssp ---------------------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence 2344556677888888888888877766332 23344444443321
Q ss_pred CCCC--cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhh---Chh----HHH
Q 000159 649 LPGW--SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV---GPG----FIF 719 (2013)
Q Consensus 649 ~pgl--~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~---~~~----~Vl 719 (2013)
.+ .|.+..|.+.++.++..++...+......+..+++.|.+.+.+...|..+..++..++... ..+ .++
T Consensus 575 --~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~ 652 (1230)
T 1u6g_C 575 --RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652 (1230)
T ss_dssp --HHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred --HHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence 13 5778889999999999999886643344678888988888887667777777777776532 223 344
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHH---HhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHh
Q 000159 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC---KDTGLQSSAAATRNATIKLLGALHKFVGPDIKG 796 (2013)
Q Consensus 720 ~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l---~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~ 796 (2013)
+.+...+ ...++.+|..++.++..++..+|. .++...+.+.+ ..+ +.+.|..++..+..++..|+...++.+..
T Consensus 653 ~~L~~~l-~~~~~~~r~~a~~al~~l~~~~~~-~~~~~~v~~~l~~ll~l-l~~~D~~~~~~~~~~L~~l~~~~~~~~~~ 729 (1230)
T 1u6g_C 653 PILASFL-RKNQRALKLGTLSALDILIKNYSD-SLTAAMIDAVLDELPPL-ISESDMHVSQMAISFLTTLAKVYPSSLSK 729 (1230)
T ss_dssp HHHHHHT-TSCCHHHHHHHHHHHHHHHHHCCT-TCCHHHHHHHHTTCGGG-SCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcccc-cCCHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHHHHhCchhHHH
Confidence 4444443 567899999999999999998874 34444444444 344 67888999999999999999887766655
Q ss_pred hhhhccHHHHHHHHH-------------HHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC
Q 000159 797 FLADVKPALLSALDA-------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (2013)
Q Consensus 797 ~L~~lkp~ll~~Le~-------------ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~ 863 (2013)
++..+-|.++..+.. -|..+...++ +. .....+.+.++..+.
T Consensus 730 ~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~------------------------~~-~~~~~ll~~l~~~~~ 784 (1230)
T 1u6g_C 730 ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT------------------------NN-LGYMDLLRMLTGPVY 784 (1230)
T ss_dssp TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC------------------------TT-CSHHHHHHHHSTTTT
T ss_pred hHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC------------------------CC-CCHHHHHHHHhcccc
Confidence 555555544443321 1111111000 00 001111122222211
Q ss_pred ---C--CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 864 ---S--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 864 ---d--~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
+ ..|+.|..+.+.+..++.... +.. ++++..|...+.+ .+..++..++.+++.++...+ +.. ...
T Consensus 785 ~~~~~~~~~~~~~~~a~~i~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~-~~~ 856 (1230)
T 1u6g_C 785 SQSTALTHKQSYYSIAKCVAALTRACP----KEG-PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID--LSG-QLE 856 (1230)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHSC----CCS-HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC--CCS-CTH
T ss_pred CCCCccccchhhHHHHHHHHHHHHhcc----hhh-HHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCC--Ccc-ccc
Confidence 1 367778888888887776321 111 3444444445543 345566677778888765432 222 245
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC---CChhhh
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHL 1013 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~~~~l 1013 (2013)
+.+.++..|.|....||.+|..+|+.++. .+++.++|.+...+.+. +..|...+.-|.+.+...+.. +....+
T Consensus 857 l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~-~~~~~~lp~ll~~l~~~---~~~~~~~l~al~e~i~~~~~~~~~~~~~~i 932 (1230)
T 1u6g_C 857 LKSVILEAFSSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQ---PKRQYLLLHSLKEIISSASVVGLKPYVENI 932 (1230)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHSSCSTTTHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHhHHHhc-cCHHHHHHHHHHHHhcc---chhhHHHHHHHHHHHhcCChhhHHhhHHHH
Confidence 78999999999999999999999999874 35678899999999754 567888888888888754322 122445
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhcc-CChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC
Q 000159 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD-IQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSAS 1092 (2013)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~-L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~ 1092 (2013)
...++..+.|.+..+|..+.+|++.+....+.. +.+.+.+ |+
T Consensus 933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~-l~p~l~~~l~------------------------------------ 975 (1230)
T 1u6g_C 933 WALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLI------------------------------------ 975 (1230)
T ss_dssp HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGG-THHHHTTTSS------------------------------------
T ss_pred HHHHHHHhcCcchhhHHHHHHHHhhhhccChHH-HHHHHHHHhc------------------------------------
Confidence 555777888888899999999999987775422 2222210 00
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhh
Q 000159 1093 NGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR 1172 (2013)
Q Consensus 1093 ~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~ 1172 (2013)
T Consensus 976 -------------------------------------------------------------------------------- 975 (1230)
T 1u6g_C 976 -------------------------------------------------------------------------------- 975 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHH
Q 000159 1173 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (2013)
Q Consensus 1173 ~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~ 1252 (2013)
+.+...|..++..+..++...+..+...++-++.-+...+.|++..|-..++..|..+..... .+-..
T Consensus 976 --------~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~ 1043 (1230)
T 1u6g_C 976 --------SGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP----SLIRD 1043 (1230)
T ss_dssp --------SSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG----GGTGG
T ss_pred --------CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCh----HhHHH
Confidence 000000111111111112221111112232222333334688888888888888887654322 22223
Q ss_pred HHHhhhhHHHHhhcCChH------------------HHHHHHHHHHHHHhhccC----ccccHHHHHhhhcCCChhhHHH
Q 000159 1253 EAAVFLPCLVEKSGHNIE------------------KVREKMRELTKQIVNFYS----ATKTLPYILEGLRSKNNRTRIE 1310 (2013)
Q Consensus 1253 Ea~~~lP~L~~K~Gd~k~------------------~vr~~v~~il~~i~~v~p----~skvf~~l~~gl~sKN~r~R~e 1310 (2013)
....++|.|+..+-...+ .+|+..-+.+-.+...+. ...+|+.++.|++-- -..|.-
T Consensus 1044 ~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d~-~di~~~ 1122 (1230)
T 1u6g_C 1044 LLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-YDIKML 1122 (1230)
T ss_dssp GHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSC-HHHHHH
T ss_pred HHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCch-HHHHHH
Confidence 467799999877643333 577766666655555442 346777777888663 678888
Q ss_pred HHHHHHHHHHhhCCCcccc-cchHHHHHHhhc------------CCChHHHHHHHHHHHHHHHHhC
Q 000159 1311 CVDLVGFLIDHHGAEISGQ-LKSLQIVASLTA------------ERDGEIRKAALNTLATGYKILG 1363 (2013)
Q Consensus 1311 cl~~l~~li~~~g~~~~~~-~k~l~~ia~~i~------------drd~~VR~AAl~~l~~~y~~~G 1363 (2013)
|...|..++......+... .+.+..+++.++ +|..+...+||.|+..+..+.|
T Consensus 1123 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~~ 1188 (1230)
T 1u6g_C 1123 TFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPE 1188 (1230)
T ss_dssp HHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999888876655322 222333333222 2334555566666665544433
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.96 E-value=5.6e-25 Score=316.00 Aligned_cols=968 Identities=15% Similarity=0.132 Sum_probs=595.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-------hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcCh
Q 000159 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-------AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP 166 (2013)
Q Consensus 94 v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~-------~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~ 166 (2013)
-++.|++|..+..+.+|..|.+-+..++... ....++..|+.++.+++|+++.+++.+|..+....+.. .+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~ 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH
Confidence 3667888866678899999987777665432 13477888899999999999999999999887644331 24
Q ss_pred hHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhh
Q 000159 167 KRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG 246 (2013)
Q Consensus 167 k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~ 246 (2013)
..+++.+...+.+.+..||..|...+..+...+|+.. . ..........
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~---~-~~~~~~~~~~---------------------------- 132 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS---S-GSALAANVCK---------------------------- 132 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---------CCTHHHHHH----------------------------
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc---c-ccchHHHHHH----------------------------
Confidence 5688899999999999999999999999888887530 0 0000000000
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhc-cCCHHHHHHHHHHHHHHhc-CCCCCCCChH
Q 000159 247 QELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK-ATKWSERKDAVAELTKLAS-TKRIAPGDFT 324 (2013)
Q Consensus 247 ~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~-s~kWkeR~eaL~~L~~l~~-~pki~~~~~~ 324 (2013)
++ + +.+.+.+. +.+|..|..|++.|..++. .++.....+.
T Consensus 133 ---------------------------------~l---l--p~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~ 174 (1230)
T 1u6g_C 133 ---------------------------------KI---T--GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP 174 (1230)
T ss_dssp ---------------------------------HH---H--HHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH
T ss_pred ---------------------------------HH---H--HHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 11 1 23444555 4788999999999988874 3333333567
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHh-c---CC
Q 000159 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKA-G---CL 399 (2013)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~ai~~~-~---~~ 399 (2013)
.++..|...+.|.+..|+..|+.+|+.++..++..| ...+++.++..+.+.. ..+|..+..++..++.. + ..
T Consensus 175 ~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 251 (1230)
T 1u6g_C 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 251 (1230)
T ss_dssp HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 899999999999999999999999999998877665 3456777777765543 35667778888888775 1 13
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHhCc
Q 000159 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSV-LAAIAKSVGM 478 (2013)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~a-l~~l~~~~Ge 478 (2013)
.+..+++.+...+++.++.+|..++.++..+...++.. +.++++.++|.+.+.+.+ +++........ ...+....++
T Consensus 252 ~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~l~~li~~ll~~l~~-d~~~~~~~d~~~~~~~~~~~~~ 329 (1230)
T 1u6g_C 252 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVSTIINICLKYLTY-DPNYNYDDEDEDENAMDADGGD 329 (1230)
T ss_dssp SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHTTCCCC-C---------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-HHHhHHHHHHHHHHHhCC-CCCCCCcccccccccccccccc
Confidence 35788999999999999999999999999888766543 456778899999888853 22221000000 0000000011
Q ss_pred hhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccccccc---CCCCCCCCCCCCC
Q 000159 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASML---SGKRPVSAAPASK 555 (2013)
Q Consensus 479 ~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~---~~~~P~~~~~~~~ 555 (2013)
..... .++ ++.... . .. ..++..+.... ....
T Consensus 330 ~~~~~----~~~-------~~~~~~--d---~~--------------------~~vR~~A~~~l~~l~~~~--------- 364 (1230)
T 1u6g_C 330 DDDQG----SDD-------EYSDDD--D---MS--------------------WKVRRAAAKCLDAVVSTR--------- 364 (1230)
T ss_dssp -------------------------------CT--------------------THHHHHHHHHHHHHHTTC---------
T ss_pred cchhh----ccc-------cccccc--c---cC--------------------HHHHHHHHHHHHHHHHhc---------
Confidence 00000 000 000000 0 00 00000000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc
Q 000159 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL 635 (2013)
Q Consensus 556 k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~ 635 (2013)
+ +.+...+..+ .+.++..+.+.+...|.++++.+...+......
T Consensus 365 ------------------------------~-----~~~~~~~~~l-~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 408 (1230)
T 1u6g_C 365 ------------------------------H-----EMLPEFYKTV-SPALISRFKEREENVKADVFHAYLSLLKQTRPV 408 (1230)
T ss_dssp ------------------------------C-----TTHHHHHTTT-HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC
T ss_pred ------------------------------h-----hHHHHHHHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccc
Confidence 0 0011111122 244667777888888888888888777653210
Q ss_pred --------------------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC
Q 000159 636 --------------------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (2013)
Q Consensus 636 --------------------~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD 695 (2013)
....+.++..+.. .++|.+..+...++.++..++..++.....++..+++.+++.+.|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~--~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d 486 (1230)
T 1u6g_C 409 QSWLCDPDAMEQGETPLTMLQSQVPNIVKALHK--QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND 486 (1230)
T ss_dssp ------------CCCHHHHHHHHTTHHHHHHHH--HTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTC
T ss_pred cccccCccccccccchHHHHHHHhhHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcC
Confidence 1112233443322 367888899999999999999887665556788999999999988
Q ss_pred h----hhhHHHHHHHHHHHhhhChhH-------HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC------CCCC--h
Q 000159 696 I----KTRAHAMKCLTTFSEAVGPGF-------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV------SHLK--L 756 (2013)
Q Consensus 696 ~----K~r~~a~e~L~~l~e~~~~~~-------Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~------~~l~--~ 756 (2013)
. .++..+...+..+++..+++. +++.++..+ .+++++++.+++..+..+++.+|. ..+. +
T Consensus 487 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l-~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 565 (1230)
T 1u6g_C 487 KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV-GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 565 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 5 457777777777777666552 345555543 678999999999999999998886 1221 3
Q ss_pred hhHHHHHHhcCC--CCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCcccc
Q 000159 757 KDLIDFCKDTGL--QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (2013)
Q Consensus 757 k~li~~l~~~gL--~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~ 834 (2013)
..+++.+... + .+.++.||.+|+.+++.|....|+.+..++.. ++..+...+
T Consensus 566 ~~ll~~ll~~-l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~----~l~~L~~~l--------------------- 619 (1230)
T 1u6g_C 566 KDLFTCTIKR-LKAADIDQEVKERAISCMGQIICNLGDNLGSDLPN----TLQIFLERL--------------------- 619 (1230)
T ss_dssp HHHHHHHHHH-HSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHH----HHHHHHHHT---------------------
T ss_pred HHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHH----HHHHHHHHh---------------------
Confidence 4567666655 6 77889999999999999999999776544433 222222211
Q ss_pred CCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhcccchhHHHHH
Q 000159 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVM 913 (2013)
Q Consensus 835 ~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~-~~~~eL~~~L~~rL~DsN~~V~~ 913 (2013)
.+. ..|..++..+..+.... ..... ..+.++++.|...+.|.+..++.
T Consensus 620 ----------------------------~~e--~~r~~~~~al~~i~~~~-~~~~~~~~~~~i~~~L~~~l~~~~~~~r~ 668 (1230)
T 1u6g_C 620 ----------------------------KNE--ITRLTTVKALTLIAGSP-LKIDLRPVLGEGVPILASFLRKNQRALKL 668 (1230)
T ss_dssp ----------------------------TSS--SHHHHHHHHHHHHTTCS-SCCCCHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred ----------------------------ccc--hhHHHHHHHHHHHHhCc-cccchHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 110 14666777777665311 11111 11477888899999999999999
Q ss_pred HHHHHHHHHHHHhChhhH-hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCC
Q 000159 914 ATLITLGAVASAMGPAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLG 986 (2013)
Q Consensus 914 ~Al~~l~~La~alg~~~~-~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~ 986 (2013)
.++.+++.|+...+..+. .++..++..++..+.+....++..+..+|..+++..+ .+.+++.+...+.+....
T Consensus 669 ~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 748 (1230)
T 1u6g_C 669 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQ 748 (1230)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccc
Confidence 999999999999986653 3444444444556678888899999999999987654 356778888878754322
Q ss_pred hhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCC-----CChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000159 987 AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTD-----KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (2013)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D-----~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~ 1061 (2013)
......++..+............+..++..+...+.. ....+|..+.+|++.+....|...- ..+..+-
T Consensus 749 ~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~----- 822 (1230)
T 1u6g_C 749 GGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFI----- 822 (1230)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTT-----
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHH-----
Confidence 2233334434433332211122445555555443322 2446788899999998887776421 1111110
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhhcccCCCChHH
Q 000159 1062 LILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1141 (2013)
Q Consensus 1062 ~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1141 (2013)
...+. + .. ......-.+..+ ++-.
T Consensus 823 ------~~~~~------------------------------------~-~~----------~~~~~~~~l~~l---~~~g 846 (1230)
T 1u6g_C 823 ------QDVKN------------------------------------S-RS----------TDSIRLLALLSL---GEVG 846 (1230)
T ss_dssp ------TTTTT------------------------------------T-TC----------CHHHHHHHHHHH---HHHH
T ss_pred ------HHhCC------------------------------------C-Cc----------cHHHHHHHHHHH---HHhc
Confidence 00000 0 00 000000000000 0000
Q ss_pred HhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhc
Q 000159 1142 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFC 1221 (2013)
Q Consensus 1142 R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~ 1221 (2013)
+ ...|.. -++ +. +.++..+.+.+-.-|..|...|-.... .+++.++.++.-.+.
T Consensus 847 ~----~~~~~~---~~~----l~--------~~~~~~l~~~~~~Vr~aAa~aLg~l~~-------~~~~~~lp~ll~~l~ 900 (1230)
T 1u6g_C 847 H----HIDLSG---QLE----LK--------SVILEAFSSPSEEVKSAASYALGSISV-------GNLPEYLPFVLQEIT 900 (1230)
T ss_dssp H----HSCCCS---CTH----HH--------HHHHHGGGCSCHHHHHHHHHHHHHHHH-------HTHHHHHHHHHHHHH
T ss_pred c----cCCCcc---ccc----HH--------HHHHHHhCCCCHHHHHHHHHHhHHHhc-------cCHHHHHHHHHHHHh
Confidence 0 001111 111 11 234445555666667777666665542 234444444444443
Q ss_pred CcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHHhhhc
Q 000159 1222 KSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLR 1301 (2013)
Q Consensus 1222 dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v~p~skvf~~l~~gl~ 1301 (2013)
+. +..-...|..|.+++... ..-.+. ..+..++|.|+..+|+.-+.+|..+-+++..+..+.| ..++|.|.+.++
T Consensus 901 ~~-~~~~~~~l~al~e~i~~~--~~~~~~-~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~-~~l~p~l~~~l~ 975 (1230)
T 1u6g_C 901 SQ-PKRQYLLLHSLKEIISSA--SVVGLK-PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLI 975 (1230)
T ss_dssp SC-GGGHHHHHHHHHHHHHSS--CSTTTH-HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSS
T ss_pred cc-chhhHHHHHHHHHHHhcC--ChhhHH-hhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh-HHHHHHHHHHhc
Confidence 32 333334556666665431 122333 4477889999999998888899999999999998865 679999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhhCCCcccccchH-HHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhc
Q 000159 1302 SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (2013)
Q Consensus 1302 sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l-~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~ 1372 (2013)
+.|+.+|.-|+..+.+++...+.......+.+ +.+-.+++|.|..||.+|+.+|..+....|+.+..+++.
T Consensus 976 ~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~ 1047 (1230)
T 1u6g_C 976 SGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1047 (1230)
T ss_dssp SSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHH
T ss_pred CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHH
Confidence 99999998888887777654443221112233 555568899999999999999999887776665555543
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=1.2e-28 Score=289.17 Aligned_cols=230 Identities=29% Similarity=0.469 Sum_probs=217.3
Q ss_pred CCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHH
Q 000159 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (2013)
Q Consensus 271 D~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~ 348 (2013)
||||+.+++||+++++ +.|++.+.+++|++|++|+..|..++. ++++...+|.++++.|.+++. |.|..|+..|+.|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 7899999999999999 689999999999999999999999886 478777889999999999995 9999999999999
Q ss_pred HHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHH
Q 000159 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (2013)
Q Consensus 349 l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~ 428 (2013)
++.|+.++++.|.+|+..++|.|+++++|+++.||+++..||.+++.. .+++.+++.|..+++++||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 689999999999999999999999999999
Q ss_pred HHHHhcChh-HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcC
Q 000159 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2013)
Q Consensus 429 ~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (2013)
.++..+.+. .+..+++.++|.+.++++|++++||++|.+|++.++.++|++.+.++++.|++.++++|++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999887644 345778999999999999999999999999999999999998899999999999999999999875
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.95 E-value=1.3e-22 Score=280.65 Aligned_cols=771 Identities=12% Similarity=0.137 Sum_probs=536.7
Q ss_pred hhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hHHHHHH
Q 000159 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVCD 96 (2013)
Q Consensus 18 erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~-~~~~v~~ 96 (2013)
+...+.+-..|.+|.+.|.+ +. ..|.|..|...+-.-..+.+..+...|.-.|-.++++.-..... ....|-.
T Consensus 20 ~~~~s~d~~~r~~Ae~~L~~-~~-----~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~ 93 (852)
T 4fdd_A 20 KESQSPDTTIQRTVQQKLEQ-LN-----QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKS 93 (852)
T ss_dssp HHHTCSCHHHHHHHHHHHHH-HT-----TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHH-HH-----hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 34457788899999888874 32 35666555443333336778888888877776666542111111 1223444
Q ss_pred HHHHhhcC-CChhHHHHHHHHHHHHHhhhhh---hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC------cCh
Q 000159 97 AIAAKCLT-GRPKTVEKAQAVFMLWVELEAV---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI------IPP 166 (2013)
Q Consensus 97 ~LveK~l~-~k~~~k~~A~~~ll~~~E~~~~---~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~------i~~ 166 (2013)
.|++- ++ ..+.+|..+.+++-.++..+.+ ..+++.|...+.+.++.++.+++.+|..+++.++... -.+
T Consensus 94 ~ll~~-l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~ 172 (852)
T 4fdd_A 94 ECLNN-IGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172 (852)
T ss_dssp HHHTT-TTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred HHHHH-HcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence 44543 55 5778999999998888876532 3578888889999999999999999999999887631 125
Q ss_pred hHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhh
Q 000159 167 KRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG 246 (2013)
Q Consensus 167 k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~ 246 (2013)
..+++.+..+|.+.+..||..|...+..+....+. .+...+
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~---------------------------------- 213 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-----ALMLHI---------------------------------- 213 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-----HHHTSH----------------------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-----HHHHHH----------------------------------
Confidence 67899999999999999999988776543322110 000000
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCCCCCChHH
Q 000159 247 QELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTE 325 (2013)
Q Consensus 247 ~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki~~~~~~~ 325 (2013)
+ ++ + +.+...+.+.++..|+.+++.|..++. .++.....+..
T Consensus 214 ------------------------~--------~~---l--~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~ 256 (852)
T 4fdd_A 214 ------------------------D--------SF---I--ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN 256 (852)
T ss_dssp ------------------------H--------HH---H--HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHH
T ss_pred ------------------------H--------HH---H--HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 0 01 0 123444566778889999999988874 44433334567
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhcchhhhHhHHHHHHHHh-----------cc-----------CcHH
Q 000159 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKL-----------KE-----------KKPT 381 (2013)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~llp~LL~kl-----------kd-----------kk~~ 381 (2013)
++..+.+.+.|.+..|+..|+.++..+++. .++.+.+|...++|.++..+ .| ..-.
T Consensus 257 l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~ 336 (852)
T 4fdd_A 257 IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCC
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccch
Confidence 888899999998999999999999998863 44557789999999999998 34 3446
Q ss_pred HHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHH
Q 000159 382 VAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (2013)
Q Consensus 382 V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 460 (2013)
||.++..+++.+... +..-++.+++.+...+++.+|.+|..++..|..+.+.++. .+.++++.++|.+..++.|.++.
T Consensus 337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHH
Confidence 899999999999876 2122455677777788899999999999999987765543 45567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccccc
Q 000159 461 VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540 (2013)
Q Consensus 461 VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s 540 (2013)
||.+|..+++.+...++......
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~--------------------------------------------------------- 438 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDT--------------------------------------------------------- 438 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTT---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhccchHHH---------------------------------------------------------
Confidence 99999999987665443210000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHH
Q 000159 541 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE 620 (2013)
Q Consensus 541 ~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ 620 (2013)
-.+++ -+.++..|.+.++..|..
T Consensus 439 -------------------------------------------------~~~~l--------l~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 439 -------------------------------------------------YLKPL--------MTELLKRILDSNKRVQEA 461 (852)
T ss_dssp -------------------------------------------------THHHH--------HHHHHHHHTCSSHHHHHH
T ss_pred -------------------------------------------------HHHHH--------HHHHHHHHhCCCHHHHHH
Confidence 00111 134667777889999999
Q ss_pred HHHHHHHHHHhc-cCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC-C-chhhHHHHHHHHHhh---hc
Q 000159 621 AISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-F-PKKCVVLCLLGISER---VA 694 (2013)
Q Consensus 621 ale~L~~~v~~~-~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~-~-~~~~~~~il~~LveK---lg 694 (2013)
|+..|..+++.. ....++.+.++..|.. .+++.+.+....+++++..++...+. + ...++..++|.++++ +.
T Consensus 462 a~~aL~~l~~~~~~~l~~~l~~ll~~L~~--~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~ 539 (852)
T 4fdd_A 462 ACSAFATLEEEACTELVPYLAYILDTLVF--AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK 539 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhHhhHhHHHHHHHHHHH--HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcc
Confidence 999999888763 3334444444443321 12222233344566777777665432 2 134677788888753 33
Q ss_pred C--hhhhHHHHHHHHHHHhhhChhHH--HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCC
Q 000159 695 D--IKTRAHAMKCLTTFSEAVGPGFI--FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS 770 (2013)
Q Consensus 695 D--~K~r~~a~e~L~~l~e~~~~~~V--l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~ 770 (2013)
| ..++ .+.+++..++...+..++ ++.+++ .++..+...+.... ....-... ++.
T Consensus 540 d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~------------~~~~~l~~~l~~~~--------~~~~~~~~-~~~ 597 (852)
T 4fdd_A 540 DEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ------------RCVNLVQKTLAQAM--------LNNAQPDQ-YEA 597 (852)
T ss_dssp TTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH------------HHHHHHHHHHHHHH--------HHHHCTTT-SCC
T ss_pred cccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH------------HHHHHHHHHHHHHH--------HhhcCCcc-cCC
Confidence 3 2343 677888888877765432 222222 12333332221110 00000011 455
Q ss_pred CcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCccc
Q 000159 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (2013)
Q Consensus 771 ~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dI 850 (2013)
.+..+|..++.+++.+...+|..+.+|+.+
T Consensus 598 ~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~-------------------------------------------------- 627 (852)
T 4fdd_A 598 PDKDFMIVALDLLSGLAEGLGGNIEQLVAR-------------------------------------------------- 627 (852)
T ss_dssp CCTHHHHHHHHHHHHHHHHHGGGGHHHHHT--------------------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHhHhHHHHhcC--------------------------------------------------
Confidence 577899999999999999999877766521
Q ss_pred ccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhh
Q 000159 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (2013)
Q Consensus 851 s~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~ 930 (2013)
..+.+-++..+.|+++.+|..+...+..++......+.+. +.++++.|...+.+.+..++..|+.+++.++..+|.+|
T Consensus 628 -~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~ 705 (852)
T 4fdd_A 628 -SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM 705 (852)
T ss_dssp -CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGG
T ss_pred -CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhH
Confidence 0133456666788889999999999999997665666766 48899999999988888999999999999999999999
Q ss_pred HhhhhhHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhc
Q 000159 931 EKSSKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2013)
Q Consensus 931 ~~~~~~llp~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2013)
.+|+..+++.++..+.+. ...+++.+..+++.++..++ ++.+++.+...|.+.. +...|..++..+...+.
T Consensus 706 ~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~-d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 706 QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHH
Confidence 999999999999999875 45799999999999998852 4667777777786432 34678888988888777
Q ss_pred cCCCCCChhhhHHH---HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHH
Q 000159 1003 GLSGFPDAAHLLKP---ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065 (2013)
Q Consensus 1003 ~~~~~~~~~~ll~p---l~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~ 1065 (2013)
..+.. +...+.. .+....+..++.+..-...|..+-..+|.+....++.+|+|..+..+..
T Consensus 785 ~~p~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 785 VNPSG--VIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HCGGG--TGGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred hChHh--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHH
Confidence 65432 2222222 3445688899999999999999999999988999999999988877664
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.93 E-value=1.9e-21 Score=269.04 Aligned_cols=707 Identities=10% Similarity=0.086 Sum_probs=493.9
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhhhhh--HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcCh--h-HHHHh
Q 000159 98 IAAKCLTGRPKTVEKAQAVFMLWVELEAVDV--FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--K-RILKM 172 (2013)
Q Consensus 98 LveK~l~~k~~~k~~A~~~ll~~~E~~~~~~--v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~--k-~il~~ 172 (2013)
+++..++....+|..|.+-+..+-. .++. .+-.++..+.+.++.++..|...|.+.+..+-. .++. + .+...
T Consensus 18 ~l~~~~s~d~~~r~~Ae~~L~~~~~--~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~~~~~~ik~~ 94 (852)
T 4fdd_A 18 LLKESQSPDTTIQRTVQQKLEQLNQ--YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-NFPNGVTDFIKSE 94 (852)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-GCCHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHh--CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHH
Confidence 3444466678889999887765532 2332 233334444677889999999999887764322 2332 2 25567
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhcccc
Q 000159 173 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISE 252 (2013)
Q Consensus 173 l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~ 252 (2013)
+...+.+.++.||..+..++..+.++.+.+.. .
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p------------------------------------------ 127 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNW-----P------------------------------------------ 127 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----T------------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----H------------------------------------------
Confidence 77788899999999888887777765432100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhc-CCCC-----CCCChHHH
Q 000159 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRI-----APGDFTEV 326 (2013)
Q Consensus 253 ~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~pki-----~~~~~~~l 326 (2013)
++ + +.+.+.+.+.+|..|..++..|..+.. .+.. .......+
T Consensus 128 ---------------------------~l---l--~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 128 ---------------------------DL---L--PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp ---------------------------TH---H--HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred ---------------------------HH---H--HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 00 1 244555667778888899988888773 2221 12336778
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChH
Q 000159 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLV 402 (2013)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~----~~~l~ 402 (2013)
++.|.+.++|.+..|+..|+.++..+.......+..+...+++.++..+.|....||..+..+|..++... ...+.
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88888889999999999999999988876666677788899999999999999999999999999998761 12356
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-----------cC-----------CCH
Q 000159 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-----------ND-----------GTP 459 (2013)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-----------~D-----------s~~ 459 (2013)
.+++.+...+++..+.+|..++.|+..+.+... +..+.+++..++|.+...+ .| .+.
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 778888888899999999999999988654321 1224456778899999888 33 334
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccc
Q 000159 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (2013)
Q Consensus 460 ~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 539 (2013)
.||.+|..+++.+...+|+..+..+
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l------------------------------------------------------- 360 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHI------------------------------------------------------- 360 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHH-------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHH-------------------------------------------------------
Confidence 5677777777777666664321110
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHH
Q 000159 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (2013)
Q Consensus 540 s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl 619 (2013)
.+-+...+.+.+|+.|.
T Consensus 361 ---------------------------------------------------------------~~~l~~~l~~~~~~~R~ 377 (852)
T 4fdd_A 361 ---------------------------------------------------------------LPLLKELLFHHEWVVKE 377 (852)
T ss_dssp ---------------------------------------------------------------HHHHHHHHTCSSHHHHH
T ss_pred ---------------------------------------------------------------HHHHHHHhcCCCHHHHH
Confidence 12233456677899999
Q ss_pred HHHHHHHHHHHhccC-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC-CCchhhHHHHHHHHHhhhcC--
Q 000159 620 EAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVAD-- 695 (2013)
Q Consensus 620 ~ale~L~~~v~~~~~-~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~LveKlgD-- 695 (2013)
+|+..|+.+.++..+ .....+.++..+.. .++|.+..|...++.++..+.+..+ .........+++.++..+.|
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 999999988765322 12234445555432 4689999999999999998887543 22344677889999988876
Q ss_pred hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHH--
Q 000159 696 IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK-- 764 (2013)
Q Consensus 696 ~K~r~~a~e~L~~l~e~~~~~------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~-- 764 (2013)
.++|..|..+|..+++..+.. .+++.++..+ +....+....++..+..++...|..... +..+++.+.
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 578999999999999876543 2444444444 3334455444555555555544532111 233444433
Q ss_pred -hcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCC
Q 000159 765 -DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843 (2013)
Q Consensus 765 -~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d 843 (2013)
.. +.+.++.+| .++++++.+...+|..+.+|+..+-+.++..+...+.+..... .. .+
T Consensus 535 ~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~---------~~----------~~ 593 (852)
T 4fdd_A 535 WNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN---------AQ----------PD 593 (852)
T ss_dssp HHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH---------HC----------TT
T ss_pred HHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cC----------Cc
Confidence 33 677788887 7899999999999999999998888877777766543210000 00 00
Q ss_pred CCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhcccchhHHHHHHHHHHHHHH
Q 000159 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (2013)
Q Consensus 844 ~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~L 922 (2013)
.....+-..|..+++.+..++...+..+.+.. -..+++.+...+.|.+..|+..++.+++.+
T Consensus 594 -----------------~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 594 -----------------QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp -----------------TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----------------ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 00111223577788889988875444444321 057889999999999999999999999999
Q ss_pred HHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhhHHHHHHH
Q 000159 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2013)
Q Consensus 923 a~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2013)
+..+|..|.+|+..++|.+++.|.+....+|..|..+++.++.++| +..+++.+...|.++..+..++..++..
T Consensus 657 ~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ 736 (852)
T 4fdd_A 657 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 736 (852)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 9999999999999999999999998889999999999999999886 2456667777777654344677777666
Q ss_pred HHHHhccCCC--CCChhhhHHHHHhhcCC-CChHHHHHHHHHHHHHHHHcCh
Q 000159 997 LSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 997 L~~~l~~~~~--~~~~~~ll~pl~~~L~D-~~~dVR~aA~~~L~~l~~~~G~ 1045 (2013)
+.+.....+. .+.+..++.+++..|.+ .+.+.|..|..+|-.++..-+.
T Consensus 737 igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 737 IGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 6665544322 24577888888888854 6667799999999999888654
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.93 E-value=2.5e-21 Score=267.71 Aligned_cols=733 Identities=11% Similarity=0.099 Sum_probs=504.1
Q ss_pred hhc-cCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc----------
Q 000159 18 DRL-LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD---------- 84 (2013)
Q Consensus 18 erl-~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~v~~~~---------- 84 (2013)
+.+ .+.+-..|.+|-+.|.+ +... +.|.| ...+...+.+ .+..+...|...|-.+++...
T Consensus 11 ~~~~~s~d~~~r~~Ae~~L~~-~~~~---~~~~~---~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 11 ENSILSPDQNIRLTSETQLKK-LSND---NFLQF---AGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHCSSHHHHHHHHHHHHH-HHHH---CHHHH---HHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHcccCcCHHHHHHHHHHHHH-HHhh---CHHHH---HHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 345 67788899999999976 4321 12444 2233444444 367777777776666553210
Q ss_pred -hh-hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC-ChhhHHHHHHHHHHHH
Q 000159 85 -AD-AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQAL 156 (2013)
Q Consensus 85 -~~-~~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~----~~v~~~L~~~~~~K-npKv~~~~l~~L~~~l 156 (2013)
.. .. .....|-..|++-+....+.+|..+..++-.++..+-+ ..+++.|...+.+. ++.++..++.++..+.
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~ 163 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC 163 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 00 11 12234455566653335788888888888777765433 35778888888777 9999999999999999
Q ss_pred HHhCCCC--c--ChhHHHHhhhhhhcCC--ChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC
Q 000159 157 SEFGAKI--I--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT 230 (2013)
Q Consensus 157 ~~fG~~~--i--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~ 230 (2013)
..++... + ....+++.+...+.+. +..||..|..++..+..|++.. + .. ......
T Consensus 164 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-----~-~~--~~~~~~----------- 224 (861)
T 2bpt_A 164 ESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-----M-ER--EGERNY----------- 224 (861)
T ss_dssp HTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-----H-TS--HHHHHH-----------
T ss_pred HcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-----c-cC--hhHHHH-----------
Confidence 9888642 1 2456888888889998 8999999998887766555421 1 00 000000
Q ss_pred CCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHH
Q 000159 231 ARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310 (2013)
Q Consensus 231 ~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~ 310 (2013)
++ ..+.+.+.+.+|+.|..+++.|.
T Consensus 225 --------------------------------------------------ll-----~~l~~~~~~~~~~~r~~a~~~l~ 249 (861)
T 2bpt_A 225 --------------------------------------------------LM-----QVVCEATQAEDIEVQAAAFGCLC 249 (861)
T ss_dssp --------------------------------------------------HH-----HHHHHHHTCSCHHHHHHHHHHHH
T ss_pred --------------------------------------------------HH-----HHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 11223346678999999999998
Q ss_pred HHhc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh-----------------cchhhhHhHHHHH
Q 000159 311 KLAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-----------------HFSGSSRFLLPVL 371 (2013)
Q Consensus 311 ~l~~-~pki~~~~~~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~-----------------~f~~~~~~llp~L 371 (2013)
.++. .+......+. .++..+...+.|.+..|+..|+.++..++..... .+.++...++|.+
T Consensus 250 ~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 329 (861)
T 2bpt_A 250 KIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL 329 (861)
T ss_dssp HHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 8874 3332222234 6777777888899999999999999999886421 1346778999999
Q ss_pred HHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000159 372 LEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (2013)
Q Consensus 372 L~klkd-------kk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (2013)
+..+.+ ....+|.++..+|..+... +...++.+++.+...+++.+|.+|..++..+..+.....+..+.+++
T Consensus 330 l~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l 409 (861)
T 2bpt_A 330 LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV 409 (861)
T ss_dssp HHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred HHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999974 3458999999999998876 21234567777778888999999999999999887665545566778
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhH-HHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000159 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2013)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~-~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2013)
+.++|.+...+.|.++.||.++..+++.+...++.... .++
T Consensus 410 ~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-------------------------------------- 451 (861)
T 2bpt_A 410 HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-------------------------------------- 451 (861)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--------------------------------------
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--------------------------------------
Confidence 99999999999999999999999988888766553100 000
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000159 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2013)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l 602 (2013)
.+++
T Consensus 452 --------------------------------------------------------------------~~~~-------- 455 (861)
T 2bpt_A 452 --------------------------------------------------------------------LPGV-------- 455 (861)
T ss_dssp --------------------------------------------------------------------HHHH--------
T ss_pred --------------------------------------------------------------------HHHH--------
Confidence 0111
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc-----CcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF 677 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-----~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~ 677 (2013)
-+.++..|.+. ++.|..+...|..+++..+ ...++.+.++..|...-.-.|.+..|...+++++..++...+.-
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 13344556554 7788888888887777643 12234444443332100012555678899999999999887654
Q ss_pred chhhHHHHHHHHHhhhcC-----------------hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhhCCCh-h
Q 000159 678 PKKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNP-K 733 (2013)
Q Consensus 678 ~~~~~~~il~~LveKlgD-----------------~K~r~~a~e~L~~l~e~~~~~------~Vl~~L~~~l~~~Knp-K 733 (2013)
....+..++|.+++.+.+ ..++..+.++|..+++..+.+ .+++.++..+ ...++ .
T Consensus 535 ~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~ 613 (861)
T 2bpt_A 535 VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLL-EKKDSAF 613 (861)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHH-HSTTGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-ccCCCCc
Confidence 444667788888877653 135778888999999877653 2344444443 45666 8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHH
Q 000159 734 VLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2013)
Q Consensus 734 v~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2013)
++..++.++..++..+|....+ +..+++.+... +.+.++.||..|..+++.+...+|..+.+|+..+-|.+++.+.+.
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKA-LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc
Confidence 9999999999999888753221 45678888876 888899999999999999999999888777766555544433210
Q ss_pred HhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC
Q 000159 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (2013)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~ 892 (2013)
+.++.+|..++..+..++...+..+.+.
T Consensus 693 ---------------------------------------------------~~~~~vr~~~~~~l~~l~~~~~~~~~~~- 720 (861)
T 2bpt_A 693 ---------------------------------------------------NARRELKPAVLSVFGDIASNIGADFIPY- 720 (861)
T ss_dssp ---------------------------------------------------TCCTTHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred ---------------------------------------------------cccHhhhHHHHHHHHHHHHHhhhhHHHH-
Confidence 0124578888888988887544444443
Q ss_pred hhhHHHHHHhcccc-----------hhHHHHHHHHHHHHHHHHHhC---hhhHhhhhhHHHHHHHHhCCC----cHHHHH
Q 000159 893 TGELFGGLRGRLYD-----------SNKNLVMATLITLGAVASAMG---PAVEKSSKGVLSDILKCLGDN----KKHMRE 954 (2013)
Q Consensus 893 ~~eL~~~L~~rL~D-----------sN~~V~~~Al~~l~~La~alg---~~~~~~~~~llp~ll~~L~D~----k~~Vr~ 954 (2013)
+..+++.|...+.. ....|+..++++++.++..+| ..|.+|+..+++.+...+.|. +..||.
T Consensus 721 l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~ 800 (861)
T 2bpt_A 721 LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSR 800 (861)
T ss_dssp HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHH
Confidence 36777777776652 235788999999999999998 568999999999999998874 788999
Q ss_pred HHHHHHHHHHHhc-Cc------h-hhHHHHHHHHhc-CCCChhhHHHHHHHHHHHh
Q 000159 955 CTLTVLDAWLAAV-HL------D-KMVPYVTTALTD-AKLGAEGRKDLFDWLSKQL 1001 (2013)
Q Consensus 955 aa~~aL~~i~~~~-gl------~-~ll~~l~~~L~~-~k~~p~~R~~~l~~L~~~l 1001 (2013)
+|..++..++..+ |. . .+++.+...+.. ...+. .-.+...|..+.+
T Consensus 801 ~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 801 AAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQ-ATKDTARWAREQQ 855 (861)
T ss_dssp HHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHH
Confidence 9999999999998 63 2 556666666653 21112 2256667766544
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.93 E-value=3e-23 Score=273.93 Aligned_cols=553 Identities=18% Similarity=0.191 Sum_probs=379.4
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHh
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 366 (2013)
..+...+.+.+|+.|..|+..|..++.. +.+ ....++++.|...+ |.+..|+..++.+++.++..++.. .|...
T Consensus 13 ~~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ 87 (588)
T 1b3u_A 13 AVLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHC 87 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGG
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHH
Confidence 3577889999999999999999887631 111 12356778887766 777889999999998877665542 57788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000159 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2013)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~----~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2013)
++|.+...+.+....||+++..+|..+... .+.. .+++.+....++.++.+|..++.++..+....+.. .
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~ 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----V 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----H
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----H
Confidence 999988888899999999999999999875 3332 34555655667889999999999998877665532 2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCC
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s 522 (2013)
.+.++|.+..++.|.+++||.+|.++++.+...+|.+.. .+.+-+ .+...+... .
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~l~~----~l~~~~~d~---------~--------- 216 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV---KSEIIP----MFSNLASDE---------Q--------- 216 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHH----HHHHHHTCS---------C---------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH---HHHHHH----HHHHHhcCC---------c---------
Confidence 478899999999999999999999999999998885321 111111 111111100 0
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccC
Q 000159 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (2013)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l 602 (2013)
..++..+...++ ... ..++.++. ...+
T Consensus 217 ---------~~vr~~a~~~l~--------------------------------~l~--------~~~~~~~~----~~~~ 243 (588)
T 1b3u_A 217 ---------DSVRLLAVEACV--------------------------------NIA--------QLLPQEDL----EALV 243 (588)
T ss_dssp ---------HHHHTTHHHHHH--------------------------------HHH--------HHSCHHHH----HHHT
T ss_pred ---------HHHHHHHHHHHH--------------------------------HHH--------HhCCHHHH----HHHH
Confidence 000000000000 000 00011111 1122
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~ 682 (2013)
-+-+...+.+.+|+.|..+++.|..+....+. ....
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--------------------------------------------~~~~ 279 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--------------------------------------------EITK 279 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--------------------------------------------HHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--------------------------------------------ccch
Confidence 33444555555666666665555544333211 0011
Q ss_pred HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChh----H----HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC
Q 000159 683 VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----F----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (2013)
Q Consensus 683 ~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~----~----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~ 752 (2013)
..+++.++.-+.| ..+|..+..+|..+++..+.+ . +++.+... .++++|+||..++.+|..+...+|..
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 2234444444444 346666777777777665543 2 33333333 36889999999999999988877753
Q ss_pred CCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCcc
Q 000159 753 HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (2013)
Q Consensus 753 ~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~ 832 (2013)
. -...+++.+..+ +.+.++.||.+|...++.+...+|... +..
T Consensus 359 ~-~~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~--------------------------------- 401 (588)
T 1b3u_A 359 N-TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--LSQ--------------------------------- 401 (588)
T ss_dssp H-HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--HHH---------------------------------
T ss_pred H-HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--HHH---------------------------------
Confidence 2 134577777777 899999999999999988887766421 000
Q ss_pred ccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHH
Q 000159 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLV 912 (2013)
Q Consensus 833 ~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~ 912 (2013)
.+.+.+...+.|.+|++|..+++.+..+....+... ....+++.|...+.|.+..|+
T Consensus 402 --------------------~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr 458 (588)
T 1b3u_A 402 --------------------SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIR 458 (588)
T ss_dssp --------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHH
T ss_pred --------------------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHH
Confidence 023345556678899999999999999886432221 125788999999999999999
Q ss_pred HHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCCCChh
Q 000159 913 MATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAE 988 (2013)
Q Consensus 913 ~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll~~l~~~L~~~k~~p~ 988 (2013)
..|+.+++.++..+|..+ +...++|.++..+.|.+..+|.++..++..++..+|.+ .++|.+...+.++ ++.
T Consensus 459 ~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~ 534 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VAN 534 (588)
T ss_dssp HHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHH
T ss_pred HHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--Cch
Confidence 999999999999999875 46788999999999999999999999999999988754 5666777777766 589
Q ss_pred hHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHH
Q 000159 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
+|..++..+.......+.. .....+.| +...++|.+.+||..|..++..+
T Consensus 535 Vr~~a~~~l~~l~~~~~~~-~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 535 VRFNVAKSLQKIGPILDNS-TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 9999999998877655432 12234444 66677999999999999998764
No 11
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-24 Score=255.63 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=209.7
Q ss_pred CCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHH-HHHhccccCC--CCChhhHHHHHHhcc-cchhHHHHHHHH
Q 000159 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (2013)
Q Consensus 841 ~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~-il~~a~~~I~--~~~~~eL~~~L~~rL-~DsN~~V~~~Al 916 (2013)
.+|.++++||.++||++|.+.+.+++|++|++|++.|.. ++++ ++++. ...|++++..|++.+ +|+|..|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999 8864 46776 456799999999999 899999999999
Q ss_pred HHHHHHHHHhC-hhhH-hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc------C-chhhHHHHHHHHhcCCCCh
Q 000159 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 917 ~~l~~La~alg-~~~~-~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~------g-l~~ll~~l~~~L~~~k~~p 987 (2013)
++++.|+..++ +.|. +|...++|.++.+++|+++.|++++..||++|+.++ + ++.+++.+...|+++ ++
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 889999999999987 68
Q ss_pred hhHHHHHHHHHHHhccCCCC-----CCh-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000159 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~-----~~~-~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~ 1061 (2013)
.+|.+++.||.+++...+.. +.+ ..+++.+..+++|.+++||.+|.+||..++.++|++.|.+++..|++.+++
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887652 234 567777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000159 1062 LILERIKLN 1070 (2013)
Q Consensus 1062 ~i~~~l~k~ 1070 (2013)
+|+++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999863
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.92 E-value=2.4e-20 Score=258.46 Aligned_cols=721 Identities=12% Similarity=0.077 Sum_probs=480.0
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHH----------------h
Q 000159 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWV----------------E 122 (2013)
Q Consensus 61 v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~--~k~~~k~~A~~~ll~~~----------------E 122 (2013)
+.+.+..++..|.+.|..|-+.. ...++..|++-..+ ..+.+|..|..++-.++ +
T Consensus 10 ~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 10 TVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 34556677777777766554321 12233333333222 25667777655544332 1
Q ss_pred hh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCC--ChHHHHHHHHHHHHHHHh
Q 000159 123 LE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRW 198 (2013)
Q Consensus 123 ~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~ 198 (2013)
+. ....+-+.|+.++.+.++++ ..+..++..+....+.. -....+++.+...+.+. +..||..+..++..+..+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcc-cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 12355566788888888899 88999998888766541 13457899999999999 999999999998888877
Q ss_pred hCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000159 199 IGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 278 (2013)
Q Consensus 199 lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~ 278 (2013)
++++.+ ...-+..+.
T Consensus 161 ~~~~~~-----~~~~~~ll~------------------------------------------------------------ 175 (876)
T 1qgr_A 161 IDPEQL-----QDKSNEILT------------------------------------------------------------ 175 (876)
T ss_dssp SCHHHH-----GGGHHHHHH------------------------------------------------------------
T ss_pred cCHhhH-----HhHHHHHHH------------------------------------------------------------
Confidence 653211 110000000
Q ss_pred ccccccCcchhhhhhhccC--CHHHHHHHHHHHHHHhcC--CCCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q 000159 279 VDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLAST--KRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353 (2013)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~--kWkeR~eaL~~L~~l~~~--pki~~~~~-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La 353 (2013)
.+...+.+. +|..|..|++.|..++.. ..+....+ ..+++.+...+.|.+..++..++.|+..++
T Consensus 176 ----------~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 176 ----------AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp ----------HHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ----------HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 122222222 567788888888776531 00111001 136777777778888899999999999999
Q ss_pred HHhhhcchhhhH-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------------------CCC-----hHhHHHH
Q 000159 354 RGLRTHFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------------------CLN-----LVDVVED 407 (2013)
Q Consensus 354 ~~L~~~f~~~~~-~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~--------------------~~~-----l~~il~~ 407 (2013)
....+.|.+|+. .+++.++..+++....|+..+.+++..+.... +.. +..+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 998888999999 99999999999999999999888888776530 011 1345555
Q ss_pred HHHHhh-------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchh
Q 000159 408 VKTSVK-------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (2013)
Q Consensus 408 l~~~l~-------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~ 480 (2013)
++..+. +.+|.+|..++..|..+....+. ..++.++|.+...+.|.++.||.+|..+++.+....+...
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 555553 34677777777777766654432 2245667777777777777777777777765543222111
Q ss_pred HHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCC
Q 000159 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 560 (2013)
Q Consensus 481 ~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~ 560 (2013)
+.+++
T Consensus 402 ~~~~~--------------------------------------------------------------------------- 406 (876)
T 1qgr_A 402 LKPLV--------------------------------------------------------------------------- 406 (876)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 11111
Q ss_pred CCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccC---cch
Q 000159 561 KPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQ 637 (2013)
Q Consensus 561 k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~---~~~ 637 (2013)
.. +-+.++..|.+.+|..|..|+..|..+...... ...
T Consensus 407 --------------------------------------~~-~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 407 --------------------------------------IQ-AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp --------------------------------------HH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred --------------------------------------HH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 01 113456677888899999999999988876432 123
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------------CCchhhHHHHHHHHHhhhcCh-----hh
Q 000159 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KT 698 (2013)
Q Consensus 638 ~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~--------------~~~~~~~~~il~~LveKlgD~-----K~ 698 (2013)
..+.++..+.. .+.|. ..|...++.++..++..++ .....++..+++.|+..+.+. .+
T Consensus 448 ~l~~~l~~l~~--~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 448 YLAPLLQCLIE--GLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp THHHHHHHHHH--HTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHH--HHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 34444444322 24554 7788889999998887643 112346788899888877652 57
Q ss_pred hHHHHHHHHHHHhhhChh------HHHHHHHHHhhh----------CCC----hhHHHHHHHHHHHHHHHhC-CCCC-Ch
Q 000159 699 RAHAMKCLTTFSEAVGPG------FIFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KL 756 (2013)
Q Consensus 699 r~~a~e~L~~l~e~~~~~------~Vl~~L~~~l~~----------~Kn----pKv~~~~l~~L~~li~~fG-~~~l-~~ 756 (2013)
|..+.++|..++...+.+ .+++.++..+.. ..+ +.++..++.++..++..+| .... -+
T Consensus 525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 604 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS 604 (876)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence 888999999999877632 233333333221 111 5567778888888887766 2111 23
Q ss_pred hhHHHHHHhcCCCCCc--HhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCcccc
Q 000159 757 KDLIDFCKDTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (2013)
Q Consensus 757 k~li~~l~~~gL~~~n--~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~ 834 (2013)
..+++.+... +.+.+ +.||..+..+++.+....|..+.+|+..+-|.+
T Consensus 605 ~~l~~~l~~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l----------------------------- 654 (876)
T 1qgr_A 605 DVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL----------------------------- 654 (876)
T ss_dssp HHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------------------------
Confidence 5677777776 77765 479999999999999888877776664443333
Q ss_pred CCCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--hhHHH
Q 000159 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNL 911 (2013)
Q Consensus 835 ~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~-~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V 911 (2013)
+..+.+. +|.+|..++..+..++......+.+. ..+++..|...+.+ .+..+
T Consensus 655 ------------------------~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 655 ------------------------GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF-CDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp ------------------------HHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHTCTTSCGGG
T ss_pred ------------------------HHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhCCccccHHh
Confidence 2333333 67889999999999987554455554 47888888888866 46779
Q ss_pred HHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC------------
Q 000159 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------ 968 (2013)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-----------~~Vr~aa~~aL~~i~~~~g------------ 968 (2013)
+..++.+++.|+..+|..|.+|+..++|.+++.+.++. ..+|..+..++..++..++
T Consensus 710 ~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~ 789 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML 789 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHH
Confidence 99999999999999999999999999999999998653 3799999999999887753
Q ss_pred chhhHHHHHHHH----hcCCCChhhHHHHHHHHHHHhccCCC-C--CC-hhhhHHHHHh-hcCCCChHHHHHHHHHHHHH
Q 000159 969 LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSG-F--PD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 969 l~~ll~~l~~~L----~~~k~~p~~R~~~l~~L~~~l~~~~~-~--~~-~~~ll~pl~~-~L~D~~~dVR~aA~~~L~~l 1039 (2013)
+..+++.+...+ .++..+..+|..++..|......++. . +. ...++.+++. ++.|.+++||.+|..+++.+
T Consensus 790 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 790 VQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp SGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 234556555555 33311467898888887776665543 1 11 2356778888 99999999999999999887
Q ss_pred HH
Q 000159 1040 LR 1041 (2013)
Q Consensus 1040 ~~ 1041 (2013)
.+
T Consensus 870 ~~ 871 (876)
T 1qgr_A 870 RK 871 (876)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.92 E-value=1.7e-20 Score=259.37 Aligned_cols=702 Identities=13% Similarity=0.129 Sum_probs=473.5
Q ss_pred hccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchh---hhhhHHHH
Q 000159 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKEV 94 (2013)
Q Consensus 19 rl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds-N~~vqe~~leal~~~v~~~~~~---~~~~~~~v 94 (2013)
.|.+.+-+.|..+.+-+...+...... ..|..+.+.+...+.+. |+.+.+.++.++..+++..+.. ...+...+
T Consensus 103 ~l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~l 180 (861)
T 2bpt_A 103 ALVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180 (861)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHH
T ss_pred HHCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Confidence 356777788888887777766542110 13445566667778887 9999999999999999876543 24456677
Q ss_pred HHHHHHhhcCC--ChhHHHHHHHHHHHHHhh-h-h------hhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCc
Q 000159 95 CDAIAAKCLTG--RPKTVEKAQAVFMLWVEL-E-A------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKII 164 (2013)
Q Consensus 95 ~~~LveK~l~~--k~~~k~~A~~~ll~~~E~-~-~------~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i 164 (2013)
++.++.-.-.. .+.+|..|.+++..+++. . . ...+++.|...+.+.+++++..++.+|..++..++....
T Consensus 181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 260 (861)
T 2bpt_A 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776543224 678999999998876543 1 1 134677777778889999999999999999999886432
Q ss_pred C-hh-HHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCc---cchh
Q 000159 165 P-PK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR---KIRA 239 (2013)
Q Consensus 165 ~-~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R---~~rs 239 (2013)
+ +. .+++.+...+.+.+..||..|..++..+...... + . .+. . +. + ..|.+ +++.
T Consensus 261 ~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~-~-~~~-----------~--~~--~-~~~~~~~~~~~~ 320 (861)
T 2bpt_A 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID--I-A-YEL-----------A--QF--P-QSPLQSYNFALS 320 (861)
T ss_dssp HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--H-H-HHH-----------H--HC--T-TCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--h-h-hhh-----------h--hc--c-CCchhhHHHHHH
Confidence 2 34 6777777889999999999999988777665421 0 0 000 0 00 0 01111 0000
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCC
Q 000159 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIA 319 (2013)
Q Consensus 240 ~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~ 319 (2013)
.-..-.+. --...... ++ | ..+.+|..|+.+...|..++..- .
T Consensus 321 ~~~~il~~--ll~~l~~~---------~~--d----------------------~~d~~~~~r~~a~~~L~~l~~~~--~ 363 (861)
T 2bpt_A 321 SIKDVVPN--LLNLLTRQ---------NE--D----------------------PEDDDWNVSMSAGACLQLFAQNC--G 363 (861)
T ss_dssp HHHHHHHH--HHHHTTCC---------CC--C-----------------------CCCCCHHHHHHHHHHHHHHHHH--G
T ss_pred HHHHHHHH--HHHHHHhc---------cc--c----------------------cccccCcHHHHHHHHHHHHHHHc--c
Confidence 00000000 00000000 00 0 01235899999999998877421 1
Q ss_pred CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh-hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-c
Q 000159 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-G 397 (2013)
Q Consensus 320 ~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~-~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~-~ 397 (2013)
...+..+++.+...+.|.+..++..|+.+++.++.+.+ ..+.+|...++|.++..++|.++.||.++..++..+... +
T Consensus 364 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 22356788899999999999999999999999998876 678899999999999999999999999999999888865 1
Q ss_pred -----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC---hhHHHHhhhhHHHHHHHHhc--CCCHHHHHHHHH
Q 000159 398 -----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAAFS 467 (2013)
Q Consensus 398 -----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~---~~~l~~~l~~l~p~l~k~l~--Ds~~~VR~aA~~ 467 (2013)
...+..+++.+..++++. +.+|..++..|..+.+... +..+.++++.+++.+.+++. |.++.||.++.+
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 124678899999999876 9999999999998887654 34466788999999999998 555899999999
Q ss_pred HHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCC
Q 000159 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (2013)
Q Consensus 468 al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P 547 (2013)
+++.+....|+. +.+++..+-+.-.+.+.+.+.-. .
T Consensus 523 al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~---------------------------------------~---- 558 (861)
T 2bpt_A 523 ALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVD---------------------------------------E---- 558 (861)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSC---------------------------------------G----
T ss_pred HHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhh---------------------------------------c----
Confidence 999999999975 66777766554444444321000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHH
Q 000159 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (2013)
Q Consensus 548 ~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~ 627 (2013)
...+.++-+ .....|..+++.|..
T Consensus 559 ---------------------------------------~i~~~~~~~-----------------~~~~~~~~~~~~l~~ 582 (861)
T 2bpt_A 559 ---------------------------------------NQLTLEDAQ-----------------SLQELQSNILTVLAA 582 (861)
T ss_dssp ---------------------------------------GGCCHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred ---------------------------------------ccCChhhHH-----------------HHHHHHHHHHHHHHH
Confidence 000100000 001123444444444
Q ss_pred HHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--h-hhhHHHHH
Q 000159 628 QVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--I-KTRAHAMK 704 (2013)
Q Consensus 628 ~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~-K~r~~a~e 704 (2013)
++...+. -....+..+++.++.-+.+ . .+|..+..
T Consensus 583 l~~~~~~------------------------------------------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~ 620 (861)
T 2bpt_A 583 VIRKSPS------------------------------------------SVEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620 (861)
T ss_dssp HHHHCGG------------------------------------------GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHH
T ss_pred HHHHhhh------------------------------------------hhHHHHHHHHHHHHHHHccCCCCcHHHHHHH
Confidence 4433221 0011222233333332222 2 45667777
Q ss_pred HHHHHHhhhChhH------HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCc--HhH
Q 000159 705 CLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSA--AAT 775 (2013)
Q Consensus 705 ~L~~l~e~~~~~~------Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~~n--~~V 775 (2013)
++..+++..+.++ +++.++..+ .++++.++..++..+..++..+|.... .+..+++.+... +.+.+ +.|
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~v 698 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARREL 698 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCTTH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccHhh
Confidence 7777776655432 344455554 678999999999999999988874211 134566666665 77664 899
Q ss_pred HHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccc
Q 000159 776 RNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFT 855 (2013)
Q Consensus 776 R~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~ 855 (2013)
|..+..+++.+....|+.+.+|+..+-|.+...++. .. + + . .
T Consensus 699 r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~-----~~-~---~-----------------~------------d 740 (861)
T 2bpt_A 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT-----KP-E---N-----------------G------------T 740 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC-----CC-S---S-----------------S------------S
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc-----CC-C---C-----------------C------------C
Confidence 999999999999999999999998888777665421 00 0 0 0 0
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhcc---ccCCCCChhhHHHHHHhcccch----hHHHHHHHHHHHHHHHHHh-C
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM-G 927 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~---~~I~~~~~~eL~~~L~~rL~Ds----N~~V~~~Al~~l~~La~al-g 927 (2013)
++.. +..+.+|..+++.+..++...+ ..+.+. ..+++..|...+.|. +..|+..|+.+++.|+..+ |
T Consensus 741 ~d~~----~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g 815 (861)
T 2bpt_A 741 LEAL----DYQIKVLEAVLDAYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD 815 (861)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHH----HHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 0110 1136789999999999997532 223443 377888888888885 8899999999999999999 9
Q ss_pred hhhHhhhh-hHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhc
Q 000159 928 PAVEKSSK-GVLSDILKCLG---DNKKHMRECTLTVLDAWLAAV 967 (2013)
Q Consensus 928 ~~~~~~~~-~llp~ll~~L~---D~k~~Vr~aa~~aL~~i~~~~ 967 (2013)
+.|.+|.. .++|.+++.+. +....+++.|.=++..+.+.+
T Consensus 816 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 816 GSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp STTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999 89999999887 455678888887777776543
No 14
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=4.2e-23 Score=241.94 Aligned_cols=228 Identities=18% Similarity=0.259 Sum_probs=209.9
Q ss_pred CCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-chhHHHHHHHHHHHH
Q 000159 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLG 920 (2013)
Q Consensus 842 ~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~ 920 (2013)
.|.++++||.++|++.+++.+.|++|++|++|++.|..++..+ ..+....+.+++..|+.++. |.|..|+..|+.+++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999863 34545557999999999995 999999999999999
Q ss_pred HHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000159 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2013)
.|+..+|+.|.+|+..++|.++.+++|++..||+++..+|.+++..++++.++|.+...|.++ ++.+|.+++.||...
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 699999999999998
Q ss_pred hccCCCC----CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcCC
Q 000159 1001 LTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (2013)
Q Consensus 1001 l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~ 1072 (2013)
+..++.. ..+..+++.+..+|+|++++||++|..+++.++.++|.+.+.+++..|++.++++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8876432 24566777799999999999999999999999999999999999999999999999999999764
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.90 E-value=3.1e-19 Score=247.27 Aligned_cols=727 Identities=14% Similarity=0.104 Sum_probs=483.6
Q ss_pred hhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc--------h--
Q 000159 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD--------A-- 85 (2013)
Q Consensus 18 erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~v~~~~--------~-- 85 (2013)
+.+.+.+-..|.+|-+.|.+ +... .-|.| ...+-..+.+ .+..+...|..+|..++.... .
T Consensus 8 ~~~~s~d~~~r~~A~~~L~~-~~~~---~~~~~---~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 8 EKTVSPDRLELEAAQKFLER-AAVE---NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp HGGGCSCHHHHHHHHHHHHH-HHHH---HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHH-HHhc---ChhhH---HHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 44567788899999998855 4321 11233 3334444545 468899988888887763210 0
Q ss_pred -hhh-hhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHHH
Q 000159 86 -DAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQAL 156 (2013)
Q Consensus 86 -~~~-~~~~~v~~~LveK~l~-~k~~~k~~A~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~L~~~l 156 (2013)
... .....+-..|++- +. ..+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++..++.+|..++
T Consensus 81 ~~l~~~~~~~ik~~ll~~-l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHT-LGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HTSCHHHHHHHHHHHHHH-TTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH-hCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 011 1123344445553 44 45566 6677777766655432 46788888888888 9999999999999998
Q ss_pred HHhCCCCc--ChhHHHHhhhhhhcCC--ChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCC
Q 000159 157 SEFGAKII--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTAR 232 (2013)
Q Consensus 157 ~~fG~~~i--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~ 232 (2013)
..++...+ ....+++.+...+.+. +..||..|...+..+..+++.. +.... ....+
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~-------~~~~i------------ 218 (876)
T 1qgr_A 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FDKES-------ERHFI------------ 218 (876)
T ss_dssp HHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-HTSHH-------HHHHH------------
T ss_pred HhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhHH-------HHHHH------------
Confidence 87653211 2356788888888887 6899999998888877665531 10000 00000
Q ss_pred CCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHH
Q 000159 233 PTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312 (2013)
Q Consensus 233 P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l 312 (2013)
+ +.+.+.+.+.+|+.|..+++.|..+
T Consensus 219 -------------------------------------------------l-----~~l~~~~~~~~~~vr~~a~~~l~~l 244 (876)
T 1qgr_A 219 -------------------------------------------------M-----QVVCEATQCPDTRVRVAALQNLVKI 244 (876)
T ss_dssp -------------------------------------------------H-----HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------H-----HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 0 0111122344577888899988887
Q ss_pred hc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh------------------hc---chhhhHhHHH
Q 000159 313 AS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR------------------TH---FSGSSRFLLP 369 (2013)
Q Consensus 313 ~~-~pki~~~~~~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~------------------~~---f~~~~~~llp 369 (2013)
+. .++.....+. .++..+...+.|.+..|+..|+.++..+++... .. ..++...++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence 74 4433322234 677777777888888999999999999887531 11 1245688999
Q ss_pred HHHHHhc-------cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000159 370 VLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (2013)
Q Consensus 370 ~LL~klk-------dkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (2013)
.++..+. |....+|.++..++..+... +..-++.+++.+...+++.+|.+|..++..|..+.....+..+.+
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~ 404 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999986 34567999999999999876 111245677777788889999999999999988776665445556
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchh-HHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCC
Q 000159 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSG 520 (2013)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~ 520 (2013)
+++.++|.+..++.|.++.||.+|..+++.+...++... ..+++.
T Consensus 405 ~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~---------------------------------- 450 (876)
T 1qgr_A 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA---------------------------------- 450 (876)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH----------------------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH----------------------------------
Confidence 788999999999999999999999999998887765320 000100
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhc
Q 000159 521 GSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600 (2013)
Q Consensus 521 ~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~ 600 (2013)
.+
T Consensus 451 ------------------------------------------------------------------------~~------ 452 (876)
T 1qgr_A 451 ------------------------------------------------------------------------PL------ 452 (876)
T ss_dssp ------------------------------------------------------------------------HH------
T ss_pred ------------------------------------------------------------------------HH------
Confidence 00
Q ss_pred cCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc---------------CcchHHHHHHHHHhcCCC-CcccHHHHHHHHH
Q 000159 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ---------------NLDQSVEILVRLVCMLPG-WSEKNVQVQQQVI 664 (2013)
Q Consensus 601 ~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~---------------~~~~~~~~lv~~L~~~pg-l~DsN~qV~~~~L 664 (2013)
-+.++..|.+. ++.|..++..|..++...+ ...++.+.++..|...-. ..+.+..+...++
T Consensus 453 --l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~ 529 (876)
T 1qgr_A 453 --LQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAY 529 (876)
T ss_dssp --HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHH
T ss_pred --HHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHH
Confidence 02333444442 5666666666666665422 123344444444421100 1111334667899
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHhhhcC-----------------hhhhHHHHHHHHHHHhhhC-hh------HHHH
Q 000159 665 EVINYLAATATKFPKKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVG-PG------FIFE 720 (2013)
Q Consensus 665 e~l~~l~~~~~~~~~~~~~~il~~LveKlgD-----------------~K~r~~a~e~L~~l~e~~~-~~------~Vl~ 720 (2013)
+++..++...+.-....+..+++.+++.+.+ ..++..+..+|..++...+ .. .+++
T Consensus 530 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 609 (876)
T 1qgr_A 530 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMA 609 (876)
T ss_dssp HHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHH
T ss_pred HHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHH
Confidence 9999999877654455677888888877653 2346677888888888777 32 2444
Q ss_pred HHHHHhhhCCC--hhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCC-cHhHHHHHHHHHHHHHHhhChhHHh
Q 000159 721 RLYKIMKDHKN--PKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDIKG 796 (2013)
Q Consensus 721 ~L~~~l~~~Kn--pKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~~-n~~VR~aA~~ll~~Ly~~~G~~l~~ 796 (2013)
.++..+ .+.+ +.++..++.++..++..+|....+ +..+++.+... +.+. ++.||.+|..+++.|...+|+.+.+
T Consensus 610 ~l~~~l-~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 687 (876)
T 1qgr_A 610 SLLRMF-QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG-LKNYAEYQVCLAAVGLVGDLCRALQSNIIP 687 (876)
T ss_dssp HHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHH-HhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555443 3332 578999999999999887754222 45677777776 8876 8999999999999999999987777
Q ss_pred hhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHH
Q 000159 797 FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEA 876 (2013)
Q Consensus 797 ~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~ 876 (2013)
|+..+-+.+++.+.. .+.++.+|..++..
T Consensus 688 ~~~~i~~~l~~~l~~---------------------------------------------------~~~~~~~~~~~~~~ 716 (876)
T 1qgr_A 688 FCDEVMQLLLENLGN---------------------------------------------------ENVHRSVKPQILSV 716 (876)
T ss_dssp HHHHHHHHHHHHHTC---------------------------------------------------TTSCGGGHHHHHHH
T ss_pred hHHHHHHHHHHHhCC---------------------------------------------------ccccHHhhHHHHHH
Confidence 665544444333211 01234567778888
Q ss_pred HHHHHHhccccCCCCChhhHHHHHHhcccch-----------hHHHHHHHHHHHHHHHHHhCh----------hhHhhhh
Q 000159 877 VNKILEEANKRIQPAGTGELFGGLRGRLYDS-----------NKNLVMATLITLGAVASAMGP----------AVEKSSK 935 (2013)
Q Consensus 877 l~~il~~a~~~I~~~~~~eL~~~L~~rL~Ds-----------N~~V~~~Al~~l~~La~alg~----------~~~~~~~ 935 (2013)
+..++...+..+.+. +..+++.|...+.+. ...++..++.++..++..+|. .|.+|+.
T Consensus 717 l~~i~~~~g~~~~~~-l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 795 (876)
T 1qgr_A 717 FGDIALAIGGEFKKY-LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVE 795 (876)
T ss_dssp HHHHHHHHGGGGGGG-HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHH
T ss_pred HHHHHHHhchhHHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHH
Confidence 888887544444443 467777777766533 237888899999999988864 5788888
Q ss_pred hHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHH-HHhcCCCChhhHHHHHHHHH
Q 000159 936 GVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL--------DKMVPYVTT-ALTDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 936 ~llp~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~gl--------~~ll~~l~~-~L~~~k~~p~~R~~~l~~L~ 998 (2013)
.+++.+...+.|. ...||.+|..||+.++..+|- +.+++.+.. .+.++ ++.+|..+...+.
T Consensus 796 ~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~--~~~~r~~a~~a~~ 867 (876)
T 1qgr_A 796 FILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSK--TNKAKTLARWATK 867 (876)
T ss_dssp HHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcC--CHhHHHHHHHHHH
Confidence 8887777777777 789999999999999999875 234555666 77665 5788876554443
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.90 E-value=2.1e-20 Score=246.62 Aligned_cols=561 Identities=13% Similarity=0.120 Sum_probs=381.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhh----HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHH
Q 000159 95 CDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDV----FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRIL 170 (2013)
Q Consensus 95 ~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~~~----v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il 170 (2013)
+..|++..-+..+.+|..|...+-.++....++. ++..|.... ..++.++..+...|..+...+|.. -....++
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~-~~~~~ll 89 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP-EYVHCLL 89 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG-GGGGGGH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH-HHHHHHH
Confidence 4556666444677888888777666554333333 333343333 566777766666665444433331 1134567
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhcc
Q 000159 171 KMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250 (2013)
Q Consensus 171 ~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~ 250 (2013)
+.|..++.+.+..||+.|...+..+...+++..+.. .+-
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~----~l~------------------------------------- 128 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA----HFV------------------------------------- 128 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHH----THH-------------------------------------
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHH----HHH-------------------------------------
Confidence 777777788888888888877777765554311000 000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 000159 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTL 330 (2013)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L 330 (2013)
+-+.....+.+|..|..|...+..+... ........+++.|
T Consensus 129 -------------------------------------~~l~~l~~~~~~~~R~~a~~~l~~~~~~--~~~~~~~~l~~~l 169 (588)
T 1b3u_A 129 -------------------------------------PLVKRLAGGDWFTSRTSACGLFSVCYPR--VSSAVKAELRQYF 169 (588)
T ss_dssp -------------------------------------HHHHHHHTCSSHHHHHHHGGGHHHHTTT--SCHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHhcCCCcHHHHHHHHHHHHHHHh--cCHHHHHHHHHHH
Confidence 0111112344577777777766666532 1112235778888
Q ss_pred HHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh----HhHHH
Q 000159 331 KKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL----VDVVE 406 (2013)
Q Consensus 331 ~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l----~~il~ 406 (2013)
...+.|.+..|+..|+.+++.++..++.. .+...++|.++..+.|....||.++..+|..+... .+. +.+++
T Consensus 170 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~ 245 (588)
T 1b3u_A 170 RNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL--LPQEDLEALVMP 245 (588)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH--SCHHHHHHHTHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence 88889999999999999999999887763 45678999999999999999999999999999876 333 34677
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHH-HHH
Q 000159 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-RSI 485 (2013)
Q Consensus 407 ~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~-~~l 485 (2013)
.+...+++++|.+|..++..|..+....+... +.+.++|.+..++.|.+++||.+|..+|+.+...+|..... .++
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 322 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEI---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH---HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCccc---chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH
Confidence 77778889999999999999998877654432 24678999999999999999999999999888777653100 000
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 486 EKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAK 565 (2013)
Q Consensus 486 ~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~ 565 (2013)
+.
T Consensus 323 ~~------------------------------------------------------------------------------ 324 (588)
T 1b3u_A 323 SQ------------------------------------------------------------------------------ 324 (588)
T ss_dssp HT------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 000159 566 KDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRL 645 (2013)
Q Consensus 566 ~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~ 645 (2013)
+.+.+...+.+.+|+.|..++..|..+....+... ..+.++..
T Consensus 325 ------------------------------------l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~p~ 367 (588)
T 1b3u_A 325 ------------------------------------ILPCIKELVSDANQHVKSALASVIMGLSPILGKDN-TIEHLLPL 367 (588)
T ss_dssp ------------------------------------HHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH-HHHHTHHH
T ss_pred ------------------------------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH-HHHHHHHH
Confidence 01233445677788888887776665544322100 01111111
Q ss_pred HhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhCh----hHHHHH
Q 000159 646 VCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP----GFIFER 721 (2013)
Q Consensus 646 L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~----~~Vl~~ 721 (2013)
|.. .++|.+..|...+++.+..+.. ..+. +.+++.
T Consensus 368 l~~--~l~d~~~~Vr~~a~~~l~~l~~---------------------------------------~~~~~~~~~~~lp~ 406 (588)
T 1b3u_A 368 FLA--QLKDECPEVRLNIISNLDCVNE---------------------------------------VIGIRQLSQSLLPA 406 (588)
T ss_dssp HHH--HHTCSCHHHHHHHHTTCHHHHH---------------------------------------HSCHHHHHHHHHHH
T ss_pred HHH--HhCCCchHHHHHHHHHHHHHHH---------------------------------------hcCHHHHHHHHHHH
Confidence 110 1234444555555554444433 2222 123444
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhc
Q 000159 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (2013)
Q Consensus 722 L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 801 (2013)
+...+ .+++|++|..++.+|..+...+|...+ ...+++.+..+ +.+.++.||.+|..+++.+...+|+.. ++..
T Consensus 407 l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~- 480 (588)
T 1b3u_A 407 IVELA-EDAKWRVRLAIIEYMPLLAGQLGVEFF-DEKLNSLCMAW-LVDHVYAIREAATSNLKKLVEKFGKEW--AHAT- 480 (588)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHHCGGGC-CHHHHHHHHHG-GGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHH-
T ss_pred HHHHh-cCCCchHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHhCchh--HHHH-
Confidence 44433 678999999999999999998887533 35688888887 999999999999999999998888642 1111
Q ss_pred cHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHH
Q 000159 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (2013)
Q Consensus 802 kp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il 881 (2013)
+.+.+...+.|.+|.+|..+++.+..+.
T Consensus 481 ----------------------------------------------------llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 481 ----------------------------------------------------IIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp ----------------------------------------------------THHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 2233444556789999999999999988
Q ss_pred HhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000159 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (2013)
Q Consensus 882 ~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~ 961 (2013)
...+... ....+++.|...+.|.+..|+..++.+++.++..+|..+.. ..++|.+...+.|.+..||..|..++.
T Consensus 509 ~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~p~l~~l~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 509 EVCGQDI---TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHH---HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhcCHHH---HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH--HHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 6432111 23678889999999999999999999999999999987633 578888888889999999999999987
Q ss_pred HH
Q 000159 962 AW 963 (2013)
Q Consensus 962 ~i 963 (2013)
.+
T Consensus 584 ~l 585 (588)
T 1b3u_A 584 VL 585 (588)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 17
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.89 E-value=5.4e-22 Score=230.30 Aligned_cols=218 Identities=19% Similarity=0.244 Sum_probs=193.5
Q ss_pred HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000159 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (2013)
Q Consensus 592 ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~-~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l 670 (2013)
+++...+...+++++..+|+|++||.|++|++.|.+.+.+. .......+.+++|+.. ++.|+|++|...+|+++..+
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 45666777889999999999999999999999999998763 3334456788999864 57899999999999999998
Q ss_pred HHHc----CCCchhhHHHHHHHHHhhhcChh--hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000159 671 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (2013)
Q Consensus 671 ~~~~----~~~~~~~~~~il~~LveKlgD~K--~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~ 744 (2013)
+..+ ..++...+..++|.|++|+||+| +|+.++++|..+++.++|..+++.++.++ .+||||+|.+|+.++..
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Confidence 8765 35677778999999999999986 89999999999999999999999999975 89999999999999999
Q ss_pred HHHHhCCCCCChhhHH---HHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhC
Q 000159 745 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (2013)
Q Consensus 745 li~~fG~~~l~~k~li---~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~ 816 (2013)
+++.||.. . ...+ +.+.++ ++|+|++||++|+++++++|+++|+.++.+++++++..++.|++.|...
T Consensus 194 li~~~G~~--~-~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--P-LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--G-GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--c-cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 99999986 2 3356 777787 9999999999999999999999999999999999999999999999764
No 18
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-22 Score=241.83 Aligned_cols=218 Identities=17% Similarity=0.220 Sum_probs=164.5
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHH------HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC---
Q 000159 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI------LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--- 676 (2013)
Q Consensus 606 l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~------lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~--- 676 (2013)
+.++|.|++||.|++|+++|.+.+..........+. +...|.+ .++|+|++|++.+++++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk--~l~DsN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ--YITDSNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH--HTTCSSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 668999999999999999999999774322111111 1222221 36799999999999999999886542
Q ss_pred ---CchhhHHHHHHHHHhh-hcChh--hhHHHHHHHHHHHhhhCh-hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHh
Q 000159 677 ---FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 749 (2013)
Q Consensus 677 ---~~~~~~~~il~~LveK-lgD~K--~r~~a~e~L~~l~e~~~~-~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~f 749 (2013)
+...++..++|.|++| +||.| ++..+.++|..+++...+ ..+++.++.++ ++||||++.+++.||..++.+|
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh
Confidence 1234678899999999 78865 789999999999997654 66777777775 8999999999999999999999
Q ss_pred CCCCCChhh----HHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhH----HhhhhhccHHHHHHHHHHHhhCCCCCC
Q 000159 750 GVSHLKLKD----LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFEGT 821 (2013)
Q Consensus 750 G~~~l~~k~----li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l----~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2013)
|...++++. +++.+.++ ++|+|++||++|+.++++||+++|+.+ ..|+++++|++++.|+++|+|+.++++
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~~~ 249 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPS 249 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC---
T ss_pred CCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCCCC
Confidence 998888665 44456676 999999999999999999999999865 467899999999999999999988766
Q ss_pred CCCccc
Q 000159 822 VVPKKT 827 (2013)
Q Consensus 822 p~p~R~ 827 (2013)
|.+.+.
T Consensus 250 ~~~~~~ 255 (278)
T 4ffb_C 250 SSKMLF 255 (278)
T ss_dssp ----CC
T ss_pred CCCcch
Confidence 665554
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.45 E-value=7.4e-11 Score=150.36 Aligned_cols=378 Identities=12% Similarity=0.070 Sum_probs=270.2
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc----------
Q 000159 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (2013)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~---------- 674 (2013)
.++.++.+.+-..|.+|-+.|.++-.... ......++..+.. .+.+..|++.+.-++..++...
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENL--PTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 46677888899999999999987544211 1233455555542 2346788888888888876421
Q ss_pred --CCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChh----HHHHHHHHHhhhCC--ChhHHHHHHHHHHH
Q 000159 675 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 744 (2013)
Q Consensus 675 --~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~----~Vl~~L~~~l~~~K--npKv~~~~l~~L~~ 744 (2013)
..+.......+-..|++.+.+ .++ ..+..++..++....++ -+++.++..+ .+. ++.++..++.+|..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 234444445566667777766 467 77888899888876553 3666676665 455 89999999999999
Q ss_pred HHHHhCCCCC--ChhhHHHHHHhcCCCCC--cHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCC
Q 000159 745 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (2013)
Q Consensus 745 li~~fG~~~l--~~k~li~~l~~~gL~~~--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~ 820 (2013)
+++++....+ ....+++.+..+ +.+. ++.||.+|.++++.+..+++..+.. . .+.
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-------~-------~~~------ 215 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDK-------E-------SER------ 215 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-------H-------HHH------
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh-------h-------HHH------
Confidence 9998743222 235677877776 8888 7999999999988764332211100 0 000
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChh-hHHHH
Q 000159 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 899 (2013)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~-eL~~~ 899 (2013)
..+.+.+...+.+.++.+|..+++.+..++......+.+. +. ++++.
T Consensus 216 -------------------------------~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~ 263 (462)
T 1ibr_B 216 -------------------------------HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAI 263 (462)
T ss_dssp -------------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHH
T ss_pred -------------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0012233344567789999999999999998654556655 47 89998
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHHHh---------------------ChhhHhhhhhHHHHHHHHhCCC-------cHH
Q 000159 900 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGDN-------KKH 951 (2013)
Q Consensus 900 L~~rL~DsN~~V~~~Al~~l~~La~al---------------------g~~~~~~~~~llp~ll~~L~D~-------k~~ 951 (2013)
+...+.|.+..|+..|+..+..++... ..-+.+|+..++|.++..+.+. ...
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888889999999999999999998763 1234567788999999998643 347
Q ss_pred HHHHHHHHHHHHHHhcCchhhHH----HHHHHHhcCCCChhhHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCC
Q 000159 952 MRECTLTVLDAWLAAVHLDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1024 (2013)
Q Consensus 952 Vr~aa~~aL~~i~~~~gl~~ll~----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~ 1024 (2013)
+|.+|..+|..++..+| +.+++ .+...|.+. ++..|..++..+......... .+.+..+++.++.+|.|+
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 45544 444555555 588999999988876654431 234566777799999999
Q ss_pred ChHHHHHHHHHHHHHHHHcChh
Q 000159 1025 SSDVRKAAEACIVEILRAGGQE 1046 (2013)
Q Consensus 1025 ~~dVR~aA~~~L~~l~~~~G~~ 1046 (2013)
++.||.+|..+|..+...+|..
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988763
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.41 E-value=1.1e-10 Score=148.83 Aligned_cols=381 Identities=13% Similarity=0.090 Sum_probs=264.3
Q ss_pred hhhccCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCC--cHHHHHHHHHHHHHHHHHhch---------
Q 000159 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS--NAPVQDKALDALIAYLKAADA--------- 85 (2013)
Q Consensus 17 ~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds--N~~vqe~~leal~~~v~~~~~--------- 85 (2013)
-+.+.+.+-..|.+|-+.|.+ +... +.|.|. ..+...+.++ +..+...|...|..+++....
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~-~~~~---~~~~~~---~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLER-AAVE---NLPTFL---VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHH-HHHH---HHHHHH---HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHH-HHhh---ChHHHH---HHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 345667788899999999876 4321 123443 3333444443 788999998888888743210
Q ss_pred --hhh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHHH
Q 000159 86 --DAG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQAL 156 (2013)
Q Consensus 86 --~~~-~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~L~~~l 156 (2013)
... .....|-..|++.+....+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++.+++.+|..+.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 011 112345555666543345666 6677777666655433 36788888888887 8999999999999999
Q ss_pred HHhCCCCcC--hhHHHHhhhhhhcCC--ChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCC
Q 000159 157 SEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTAR 232 (2013)
Q Consensus 157 ~~fG~~~i~--~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~ 232 (2013)
+.+....+. ...+++.+..++.+. +..||.+|...+..+..++++ .. .. .. +.+
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-----~~-~~---~~-------~~~------ 216 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-----NF-DK---ES-------ERH------ 216 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-----HH-TS---HH-------HHH------
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-----hh-hh---hH-------HHH------
Confidence 887433222 356889999999998 799999998876665433221 11 00 00 000
Q ss_pred CCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHH
Q 000159 233 PTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312 (2013)
Q Consensus 233 P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l 312 (2013)
| ++ ..+.+.+.+.++..|..+++.|..+
T Consensus 217 ----------------------------------------~-------l~-----~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 217 ----------------------------------------F-------IM-----QVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp ----------------------------------------H-------HH-----HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----------------------------------------H-------HH-----HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 0 00 0111223455677888999999888
Q ss_pred hc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh---------------------hhcchhhhHhHHH
Q 000159 313 AS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---------------------RTHFSGSSRFLLP 369 (2013)
Q Consensus 313 ~~-~pki~~~~~~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L---------------------~~~f~~~~~~llp 369 (2013)
+. .++.....+. .++..+...+.|.+..|+..|+..+..++... ..-+.+|...++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 73 4443333455 78888888888999999999999999998764 1123467789999
Q ss_pred HHHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000159 370 VLLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (2013)
Q Consensus 370 ~LL~klkd-------kk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (2013)
.+++.+.+ ....+|.++..+|..+... +..-++.+++.+...+++.+|.+|..++..|..+...+....+..
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99998854 3457899999999999886 111234566777778889999999999999998877655444556
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
+++.++|.+..++.|+++.||.+|+.+++.+...++..
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc
Confidence 67899999999999999999999999999999998863
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.26 E-value=5.1e-09 Score=138.46 Aligned_cols=479 Identities=12% Similarity=0.159 Sum_probs=294.0
Q ss_pred chhhhHhHHHHHHHHhccCcHHHH-HHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000159 360 FSGSSRFLLPVLLEKLKEKKPTVA-ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (2013)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~-~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (2013)
|..+.+.-+..+-+.|...+...+ +++...+. ++..| ...+..+..++..++++++.+|+-+..++..+....+
T Consensus 7 f~~~~~~e~~~i~~~L~~~~~~~k~~~~~kli~-~~~~G-~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--- 81 (591)
T 2vgl_B 7 FTTNKKGEIFELKAELNNEKKEKRKEAVKKVIA-AMTVG-KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--- 81 (591)
T ss_dssp TCCCSSSHHHHHHHHTTSSCHHHHHHHHHHHHH-HHHTT-CCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH---
T ss_pred cccccCChHHHHHHHHcCCCHHHHHHHHHHHHH-HHHCC-CChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc---
Confidence 443434455566666766665443 33444443 33222 4556677788888889999999888888877665422
Q ss_pred HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccC
Q 000159 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQT 518 (2013)
Q Consensus 439 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~ 518 (2013)
..+-.++..+.+.++|+++.||..|..+++.+ +...+.+
T Consensus 82 --e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~~~~----------------------------------- 120 (591)
T 2vgl_B 82 --DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI----RVDKITE----------------------------------- 120 (591)
T ss_dssp --HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC----CSGGGHH-----------------------------------
T ss_pred --hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC----ChHHHHH-----------------------------------
Confidence 12244567888889999999998887666433 1111110
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHh
Q 000159 519 SGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598 (2013)
Q Consensus 519 ~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~ 598 (2013)
T Consensus 121 -------------------------------------------------------------------------------- 120 (591)
T 2vgl_B 121 -------------------------------------------------------------------------------- 120 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC-
Q 000159 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF- 677 (2013)
Q Consensus 599 ~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~- 677 (2013)
.+.+.+...|.|.++-.|..|+..+..++....+.... +.++..|.. -+.|.|..|+..++.++..+....++.
T Consensus 121 --~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~--lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 --YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRD--LIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp --HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHH--TTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred --HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHH--HhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 01134556667777778888888888777643332111 123333322 257888888888888888776643321
Q ss_pred chhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC--hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhC--C
Q 000159 678 PKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG--V 751 (2013)
Q Consensus 678 ~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~--~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG--~ 751 (2013)
.-......+..|+..+.+ +-.+-...++|..++.... ...+++.+... ..+.|+.|+.+|+..+..+....+ .
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~-l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPR-LSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTC-SCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 001122233444444332 2233333333332221100 12344444444 368899999999988876543221 1
Q ss_pred CCCC--hhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccccc
Q 000159 752 SHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2013)
Q Consensus 752 ~~l~--~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2013)
..+. ...+...+..+ .+++++||..|...++.+.......+..
T Consensus 275 ~~~~~~~~~~~~~L~~L--~~~d~~vr~~aL~~l~~i~~~~p~~~~~--------------------------------- 319 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLVTL--LSGEPEVQYVALRNINLIVQKRPEILKQ--------------------------------- 319 (591)
T ss_dssp BSHHHHHHHTHHHHHHH--TTSCHHHHHHHHHHHHHHHHHCCSTTTT---------------------------------
T ss_pred HHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHhChHHHHH---------------------------------
Confidence 1111 12333333343 4588999999999988775432110000
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhH
Q 000159 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909 (2013)
Q Consensus 830 ~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~ 909 (2013)
. +. .|+-..+| +|.+|.++++.+..+..+ ....+++..|...+.|.+.
T Consensus 320 -------------------~----~~-~~~~~~~d-~~~Ir~~al~~L~~l~~~-------~nv~~iv~~L~~~l~~~d~ 367 (591)
T 2vgl_B 320 -------------------E----IK-VFFVKYND-PIYVKLEKLDIMIRLASQ-------ANIAQVLAELKEYATEVDV 367 (591)
T ss_dssp -------------------C----TT-TTSCCTTS-CHHHHHHHHHHHHHTCCS-------STHHHHHHHHHHHTTSSCH
T ss_pred -------------------H----HH-hheeccCC-hHHHHHHHHHHHHHHCCh-------hhHHHHHHHHHHHHhcCCH
Confidence 0 00 12212233 499999999888776532 2257888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCCh
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 987 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p 987 (2013)
.++..++..|+.++... .+....+++.++..+.+....|+..+..++..+++..+ ...+++.+...+.+-. .|
T Consensus 368 ~~r~~~v~aI~~la~~~----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~-~~ 442 (591)
T 2vgl_B 368 DFVRKAVRAIGRCAIKV----EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD-EP 442 (591)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC-SH
T ss_pred HHHHHHHHHHHHHHHhC----hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc-CH
Confidence 99999999999988654 34456778889999999999999999999999988765 2456777777776432 47
Q ss_pred hhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000159 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~ 1045 (2013)
.+|..++ |+..-+... ..+..+.+..++..+.+.++.||..+..++..+....+.
T Consensus 443 ~~~~~~~-wilGey~~~--~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 443 DARAAMI-WIVGEYAER--IDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp HHHHHHH-HHHHTTCTT--CTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHH-HHHHccccc--ccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 7765554 543322222 123456777788888899999999999999888877654
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.23 E-value=1.4e-08 Score=134.41 Aligned_cols=492 Identities=13% Similarity=0.149 Sum_probs=310.0
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
++-+.+.+.+=..|++++..+..+. .+. +...++..+.+.+.+.+..+...+...+..+++.- ...+..+
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~-----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~ 87 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGK-----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMA 87 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTC-----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHH
Confidence 5566678888889999999887654 333 23334444556788999999888888888777641 2235667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (2013)
+..+.+-+.++++.+|..|..+|..+.. ..-.+.+++.+..++.+.+|.||..++..+.++....+. .+.. ..++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~--~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED--QGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH--HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc--ccHH
Confidence 7888889999999999877555543321 112345667788999999999999999999998875443 2211 3588
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch--------hHHHHHhhc---cHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMR--------PLERSIEKL---DDVRRNKLSEMIAGSGGDVATGTSSARV 516 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~--------~~~~~l~~L---d~~~~kki~e~~~~~~~~~~~~~~~~~~ 516 (2013)
+.+..+|+|.++.||.+|..+|..++..-++. .+..++..| ++-.+-++-+.+...
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l------------- 229 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY------------- 229 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh-------------
Confidence 99999999999999999999999887654321 123333222 222222222222110
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHH
Q 000159 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (2013)
Q Consensus 517 ~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~ 596 (2013)
.| ..+++...
T Consensus 230 -----------------------------~~-----------------------------------------~~~~~~~~ 239 (591)
T 2vgl_B 230 -----------------------------NP-----------------------------------------KDDREAQS 239 (591)
T ss_dssp -----------------------------CC-----------------------------------------CSHHHHHH
T ss_pred -----------------------------CC-----------------------------------------CChHHHHH
Confidence 00 01122222
Q ss_pred HhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhc--c-Ccch-HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHH
Q 000159 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV--Q-NLDQ-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672 (2013)
Q Consensus 597 ~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~--~-~~~~-~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~ 672 (2013)
.+ +.+...|.+.++..|.+|+..+..+.... + +... ..+.+...|.. +.+++..|+-.++..+..++.
T Consensus 240 ~l-----~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~---L~~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 240 IC-----ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT---LLSGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HH-----HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH---HTTSCHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHH
Confidence 22 45566789999999999999888654321 1 1110 11112221111 112344578889999999988
Q ss_pred HcCCCchhhHHHHHHHHHhhhcC-hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC
Q 000159 673 TATKFPKKCVVLCLLGISERVAD-IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (2013)
Q Consensus 673 ~~~~~~~~~~~~il~~LveKlgD-~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~ 751 (2013)
..++....... .++-...| ..+|..+.++|..++.....+.++.++..++ .+.++.++.+++.+|..+...|..
T Consensus 312 ~~p~~~~~~~~----~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 312 KRPEILKQEIK----VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HCCSTTTTCTT----TTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hChHHHHHHHH----hheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhChh
Confidence 76654322211 12222233 3578888889988887777778888888876 567899999999999998876542
Q ss_pred CCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCc
Q 000159 752 SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (2013)
Q Consensus 752 ~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~ 831 (2013)
....+++.+..+ +.+.+..|+..++..+..+.+..... .
T Consensus 387 ---~~~~~v~~Ll~l-l~~~~~~v~~e~i~~l~~ii~~~p~~--------~----------------------------- 425 (591)
T 2vgl_B 387 ---SAERCVSTLLDL-IQTKVNYVVQEAIVVIRDIFRKYPNK--------Y----------------------------- 425 (591)
T ss_dssp ---HHHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHSCSS--------C-----------------------------
T ss_pred ---HHHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHCcch--------H-----------------------------
Confidence 234577777777 88888888888877666554321100 0
Q ss_pred cccCCCCCCCCCCCCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHH
Q 000159 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (2013)
Q Consensus 832 ~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d-~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~ 910 (2013)
..+...+.+.+.+ .....|..++-.+++.. ..+. + -.+++..|..++.+.+..
T Consensus 426 --------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~----~~~~-~-~~~~l~~l~~~~~~~~~~ 479 (591)
T 2vgl_B 426 --------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYA----ERID-N-ADELLESFLEGFHDESTQ 479 (591)
T ss_dssp --------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC----TTCT-T-HHHHHHHHSTTCSSSCHH
T ss_pred --------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccc----cccc-C-HHHHHHHHHHhhccCCHH
Confidence 0012234444432 34555655555444332 2222 2 367888888888888999
Q ss_pred HHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh-CC-CcHHHHHHHHHHHH
Q 000159 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GD-NKKHMRECTLTVLD 961 (2013)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D-~k~~Vr~aa~~aL~ 961 (2013)
|+..++.++..+....... ....+..+++.+ .| .+..||+-|...+.
T Consensus 480 vr~~~l~a~~Kl~~~~p~~----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 480 VQLTLLTAIVKLFLKKPSE----TQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHHHHHHHHHTTCCST----THHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCchH----HHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 9999999888887654322 124555566654 45 56678887755443
No 23
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.17 E-value=2.5e-10 Score=154.06 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=167.2
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh--hhcchhhhHh
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSRF 366 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pk-i~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~~ 366 (2013)
.++.+...+-.+|+++...+..++.+.. ..... ..++..|++.+.|.+.. ..|+.+++.||+.. ...++||.-.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 4455665556788999999998775332 22223 37999999999988766 99999999999655 4589999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000159 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2013)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2013)
++|.+|+.++||...|++++..|+++++.. +...+..++|.|+.+|++. .|+.|.+++.++..+.... +..+...++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~ 174 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMP 174 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhcc
Confidence 999999999999999999999999999987 2234567899999999865 5999999999999998876 566778899
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhcc
Q 000159 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (2013)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld 489 (2013)
+++|.+..++.|..++|.++|.+++..++.+++++++++|++.|-
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~ 219 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLI 219 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH
Confidence 999999999999999999999999999999999999999998764
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.16 E-value=4.9e-09 Score=133.21 Aligned_cols=391 Identities=11% Similarity=0.049 Sum_probs=262.4
Q ss_pred hhhhcCC-----ChhhhccCCChHHHHHHHHHHHHHhhccCCCC-chHHH--hhhhhhHhhhcCC-cHHHHHHHHHHHHH
Q 000159 8 LKEAKKL-----PWEDRLLHKNWKVRNEANIDLAALCDSITDPK-DNRIR--ELGPLFKKTVADS-NAPVQDKALDALIA 78 (2013)
Q Consensus 8 ~~~~~~l-----pl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~-~~~~~--~~~~~~~k~v~Ds-N~~vqe~~leal~~ 78 (2013)
..+|... ++.+.+.+.+...|..|...|.+.+....++. ...+. ...+.+.+++.+. |+.+|..++.+|..
T Consensus 12 ~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTN 91 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3466555 36788999999999999999999875322221 11121 2345555677777 99999999999988
Q ss_pred HHHHhchhhhhhH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHhhc-CChhhHHHHH
Q 000159 79 YLKAADADAGRYA-KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAIKN-KVAKAVVPAI 149 (2013)
Q Consensus 79 ~v~~~~~~~~~~~-~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~--~-----~~v~~~L~~~~~~-KnpKv~~~~l 149 (2013)
+............ ..+++.|++-+-...+.+|+.|..++..+.+... . ..+++.|...+.+ .++.++..++
T Consensus 92 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 92 IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 7753222111111 3477878776434688999999999888876421 1 2456777777774 7899999999
Q ss_pred HHHHHHHHHhCCC--CcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhc
Q 000159 150 DVMFQALSEFGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV 227 (2013)
Q Consensus 150 ~~L~~~l~~fG~~--~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~ 227 (2013)
.+|..+....+.. ..-+..+++.|..++.+.|..||..+...+..+..... . . .+.+ .
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-----~-~--------~~~~---~--- 231 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-----D-K--------IQAV---I--- 231 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-----H-H--------HHHH---H---
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-----H-H--------HHHH---H---
Confidence 9998887543221 11236789999999999999999988766554432110 0 0 0000 0
Q ss_pred CCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHH
Q 000159 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVA 307 (2013)
Q Consensus 228 ~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~ 307 (2013)
. .+ + + +.+...+.+.+|..|..|+.
T Consensus 232 ------------------------~-~~-------------------------~---i--~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 232 ------------------------D-AG-------------------------V---C--RRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp ------------------------H-TT-------------------------T---H--HHHHHHTTCSCHHHHHHHHH
T ss_pred ------------------------H-cC-------------------------c---H--HHHHHHHCCCchhHHHHHHH
Confidence 0 00 0 1 23555567788999999999
Q ss_pred HHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-HhHHHHHHHHhccCcHHHHH
Q 000159 308 ELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAE 384 (2013)
Q Consensus 308 ~L~~l~~~pki~~~~~--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~ 384 (2013)
.|..+..+..-....+ ..+++.|...+.+.+..++..|+.+|+.|+.+-........ ..++|.++..+.+..+.|+.
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 9998875321000000 13778888889988999999999999999864333323333 37899999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH------HHHhhhhH-----H
Q 000159 385 SLTQTLQAMHKAGC-LNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA------VLKVHKDY-----V 447 (2013)
Q Consensus 385 aa~~aL~ai~~~~~-~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~------l~~~l~~l-----~ 447 (2013)
.+..+|..+...+. ... ..+++.|...++++++.+|..++..|..++....... ..++...+ +
T Consensus 337 ~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence 99999999886411 001 2367888888999999999999999998876443210 11222333 5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
+.+..++++.+.+||+.|..++..+.
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 67788889999999999988887654
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.11 E-value=9.2e-09 Score=134.21 Aligned_cols=381 Identities=10% Similarity=0.060 Sum_probs=262.5
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHH--hhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchhhhhhH-
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADS-NAPVQDKALDALIAYLKAADADAGRYA- 91 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~--~~~~~~~k~v~Ds-N~~vqe~~leal~~~v~~~~~~~~~~~- 91 (2013)
+.+.|.+.+|..|..|...|.+.+....++.-..+. ...+.+..++.+. |+.+|..++.+|..+...... ....+
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~ 170 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVV 170 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 467788999999999999999987643222111121 2345566778886 999999999998877653211 11111
Q ss_pred -HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh--hh-----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000159 92 -KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (2013)
Q Consensus 92 -~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~--~~-----~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~- 162 (2013)
..+++.|+.-.-...+.+|+.|..++..++... .. ..+++.|...+.+.++.++..++.+|..+....+..
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 245666766533368899999999988887541 11 245677788888889999999999998887543221
Q ss_pred -CcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhh
Q 000159 163 -IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241 (2013)
Q Consensus 163 -~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~ 241 (2013)
..-...+++.|..++.+.|..||..|..++..|.....+ . .+.+ ++
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~-----~---------~~~~---~~---------------- 297 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE-----A---------IQAV---ID---------------- 297 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH-----H---------HHHH---HH----------------
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH-----H---------HHHH---Hh----------------
Confidence 112356899999999999999999988877666532110 0 0000 00
Q ss_pred hHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q 000159 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 321 (2013)
Q Consensus 242 ~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~ 321 (2013)
. .+ + +.+...+.+.+|..|..|+..|..++.+..-...
T Consensus 298 ------------~-------------------------~~---v--~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 335 (530)
T 1wa5_B 298 ------------V-------------------------RI---P--KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335 (530)
T ss_dssp ------------T-------------------------TC---H--HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ------------c-------------------------Cc---H--HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH
Confidence 0 00 1 2355556778899999999999988743210000
Q ss_pred C-h-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000159 322 D-F-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (2013)
Q Consensus 322 ~-~-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~ 398 (2013)
. + ..+++.|...+.+.+..++..|+.+|+.|+.+-......++ ..++|.|+..+.+....|+..+..+|..+... .
T Consensus 336 ~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~ 414 (530)
T 1wa5_B 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG-G 414 (530)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-C
Confidence 0 0 14677888889988999999999999999864333333332 36889999999999999999999999999875 2
Q ss_pred CC----h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhh--hhHHHHHHHHhcCCC
Q 000159 399 LN----L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVH--KDYVPICMECLNDGT 458 (2013)
Q Consensus 399 ~~----l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l--~~l~p~l~k~l~Ds~ 458 (2013)
.+ . ..+++.|+..+.+.++.++..++..|..++...... .+...+ ...++.+..+++|.+
T Consensus 415 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~ 494 (530)
T 1wa5_B 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494 (530)
T ss_dssp TTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC
Confidence 11 0 136788888899999999999999999988754321 111111 124778888899999
Q ss_pred HHHHHHHHHHHHHHH
Q 000159 459 PEVRDAAFSVLAAIA 473 (2013)
Q Consensus 459 ~~VR~aA~~al~~l~ 473 (2013)
++|++.|..++..+.
T Consensus 495 ~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 495 DKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHC
Confidence 999998888776554
No 26
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.11 E-value=3.3e-05 Score=108.02 Aligned_cols=594 Identities=12% Similarity=0.076 Sum_probs=322.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcc----hhhhHhHHH
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF----SGSSRFLLP 369 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~llp 369 (2013)
.+.+=..|++|-+.|..+-+.| ++-.+ +...+. +.+..|+..|+.++....+.--..+ ..+++..+-
T Consensus 35 ~~~~~~~r~~A~~~L~~~~~~p-----~~~~~---~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll 106 (963)
T 2x19_B 35 YDPNIENKNLAQKWLMQAQVSP-----QAWHF---SWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLF 106 (963)
T ss_dssp HCCCHHHHHHHHHHHHHHHHST-----THHHH---HHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCH-----HHHHH---HHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHH
Confidence 3467788999999998876654 22222 223343 6678899999999988776432233 233333333
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHhcC--------
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKN-----KVPLVRSLTLNWVTFCIETSS-------- 435 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~-----Knp~vR~~~l~~L~~~l~~~~-------- 435 (2013)
.++.......+.|+..+..++..++.+ .....++++++|...+++ .++..+...+.+|..+.+...
T Consensus 107 ~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~ 186 (963)
T 2x19_B 107 TQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR 186 (963)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHH
Confidence 333333333588999999999999987 123456899999988865 266677888888887664320
Q ss_pred ----hhHHHHhhhhHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhCchhH--HHHHhhcc---------HHHHHHHHH
Q 000159 436 ----KAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPL--ERSIEKLD---------DVRRNKLSE 498 (2013)
Q Consensus 436 ----~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~al~~l~~~~Ge~~~--~~~l~~Ld---------~~~~kki~e 498 (2013)
+..+...++.+++.+..++.+... .++.++.+|+..+.. +|.... .++++.+- ....+.+.+
T Consensus 187 r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~ 265 (963)
T 2x19_B 187 KGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELFDSSVEAIVN 265 (963)
T ss_dssp -----CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 111234457778888888876543 489999999977666 554211 22222110 000111111
Q ss_pred HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCC
Q 000159 499 MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLT 578 (2013)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~ 578 (2013)
.+.+. .++
T Consensus 266 i~~~~------------------------------------------~~~------------------------------ 273 (963)
T 2x19_B 266 AISQP------------------------------------------DAQ------------------------------ 273 (963)
T ss_dssp HHTCT------------------------------------------TGG------------------------------
T ss_pred HHccc------------------------------------------ccc------------------------------
Confidence 11100 000
Q ss_pred CCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHh----c-------cCcchHHHHHHHHHh
Q 000159 579 EAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA----V-------QNLDQSVEILVRLVC 647 (2013)
Q Consensus 579 ~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~----~-------~~~~~~~~~lv~~L~ 647 (2013)
........+-..+..++ +.+...+...+......-.+-+..+.+. . +......+.++.+.
T Consensus 274 -------~~~~~~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~- 344 (963)
T 2x19_B 274 -------RYVNTLLKLIPLVLGLQ-EQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCT- 344 (963)
T ss_dssp -------GCHHHHHHHHHHHHTTH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-
T ss_pred -------cCHHHHHHHHHHHHhhH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHH-
Confidence 00000001111111110 1111122222221111112222222111 0 00011123333332
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHcCCC-----------chhhHHHHHHHHHhhhcC------------h-----hhh
Q 000159 648 MLPGWSEKNVQVQQQVIEVINYLAATATKF-----------PKKCVVLCLLGISERVAD------------I-----KTR 699 (2013)
Q Consensus 648 ~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~-----------~~~~~~~il~~LveKlgD------------~-----K~r 699 (2013)
..||.-+.+..|...++++|..+++....+ ....+..+++.++.++.- . ..|
T Consensus 345 ~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r 424 (963)
T 2x19_B 345 GIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYR 424 (963)
T ss_dssp TCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHH
Confidence 234321122234667788887777632211 123444556666666521 0 136
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHHHHh---h----hCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCC
Q 000159 700 AHAMKCLTTFSEAVGPGFIFERLYKIM---K----DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSS 771 (2013)
Q Consensus 700 ~~a~e~L~~l~e~~~~~~Vl~~L~~~l---~----~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~~ 771 (2013)
..+.++|..++...+. .+++.++..+ . .+.+|+.+.+++.++..+.+......-+ +..+++.+.. +.+.
T Consensus 425 ~~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~~ 501 (963)
T 2x19_B 425 VDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISIS 501 (963)
T ss_dssp HHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCCC
T ss_pred HHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCCC
Confidence 6778888888877763 3444444332 2 4568999999999998887654332111 3456665553 5656
Q ss_pred cHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccc
Q 000159 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (2013)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs 851 (2013)
++.||..+..+++.+..+++..- .|+..
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~-~~l~~--------------------------------------------------- 529 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHP-VMINS--------------------------------------------------- 529 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCH-HHHTT---------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhCH-HHHHH---------------------------------------------------
Confidence 89999999999998877654321 12211
Q ss_pred cccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc--chhHHHHHHHHHHHHHHHHHhC-h
Q 000159 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG-P 928 (2013)
Q Consensus 852 ~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~--DsN~~V~~~Al~~l~~La~alg-~ 928 (2013)
+.+.++..+.+ -++|..|...+..++..+...+.|. +.+++..|...+. +.....+...+++++.++.+++ .
T Consensus 530 --vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 530 --VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp --THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred --HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 22344444543 4677888899999998776677777 4888888877775 3456788889999999999887 7
Q ss_pred hhHhhhhhHHHHHHHHhCC-----CcHHHH---HHHHHHHHHHHHhcCchhhHHHHHHHH--hcCCCChhhHHHHHHHHH
Q 000159 929 AVEKSSKGVLSDILKCLGD-----NKKHMR---ECTLTVLDAWLAAVHLDKMVPYVTTAL--TDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D-----~k~~Vr---~aa~~aL~~i~~~~gl~~ll~~l~~~L--~~~k~~p~~R~~~l~~L~ 998 (2013)
.+.+|+..+++.++..+.. ..+..+ .....||..+++.++...- ..+...- ...+ .+..+..+...+.
T Consensus 605 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 682 (963)
T 2x19_B 605 EILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH-EDDHEGPELRKLP-VPQGPNPVVVVLQ 682 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC-C----------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc-cccccccccccCC-CCCCCCchHHHHH
Confidence 7889999999998887742 233333 3566777777777652100 0000000 0000 0000011111111
Q ss_pred HHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000159 999 KQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2013)
Q Consensus 999 ~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2013)
. +...+.-++.... .+.+|++.+..++..+...+|.+ +.+++
T Consensus 683 ~----------~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~-~~~~l 724 (963)
T 2x19_B 683 Q----------VFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD-FAPMV 724 (963)
T ss_dssp H----------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST-TGGGH
T ss_pred H----------HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccc-ccccH
Confidence 1 1222223333322 34588898999999999988865 34455
No 27
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.10 E-value=1.2e-06 Score=122.87 Aligned_cols=701 Identities=11% Similarity=0.071 Sum_probs=374.1
Q ss_pred cCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCCCcCh------hH-HHHhhh
Q 000159 103 LTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIPP------KR-ILKMLP 174 (2013)
Q Consensus 103 l~~k~~~k~~A~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~fG~~~i~~------k~-il~~l~ 174 (2013)
+++.+..|..|.+.|..+-+ .++ .+..+...+ .+.++.++..|...|...++..-. .++. |. ++..+.
T Consensus 17 ~~~d~~~r~~A~~~L~~~~~--~p~-~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~-~l~~~~~~~ir~~ll~~l~ 92 (971)
T 2x1g_F 17 YRSNSQNQAITHEWLTDAEA--SPQ-AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWH-EVPPENREELKQKILESIV 92 (971)
T ss_dssp HTSTTTC----CHHHHHTTT--STH-HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGG-GCCGGGHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHc--CHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHh-hCCHHHHHHHHHHHHHHHH
Confidence 34456678888877766533 232 222222222 357889999999999998875322 3432 22 444544
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCC
Q 000159 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254 (2013)
Q Consensus 175 ~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~ 254 (2013)
..- ...+.||.....++++|.++..+ .-.. + +.+|-..+..-. .|.
T Consensus 93 ~~~-~~~~~vr~kl~~~la~i~~~~~p-~Wp~-~--------l~~l~~~~~~~~---~~~-------------------- 138 (971)
T 2x1g_F 93 RFA-GGPKIVLNRLCISLGAYIVHMLG-EWPG-A--------IEEVINTFQNQR---MPN-------------------- 138 (971)
T ss_dssp HHT-TSCHHHHHHHHHHHHHHHHHTTC-C---------------HHHHHHHHTC--------------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHHccc-cccH-H--------HHHHHHHHhccc---ccc--------------------
Confidence 443 23689999999999999888764 1111 1 122222221100 000
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 000159 255 GPGPSEESTADVPPEID-EYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKL 333 (2013)
Q Consensus 255 g~~~~~~~~~~~~~~iD-~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~ 333 (2013)
++ +-...-...|+..++ ++.+... .. .|+..+. ..+. .....++..+.+.
T Consensus 139 ---------------~~~~~~~~~~l~iL~~l~-EEi~~~~-~~---~~r~~~~---~~l~------~~~~~vl~ll~~~ 189 (971)
T 2x1g_F 139 ---------------VSADVQLWIMLEVLTAIP-EEAQVIH-TS---VKRVVLR---AEIA------KRVQLVIHTVERY 189 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHH-HHHHHCC-CS---SCHHHHH---HHHH------TTHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHhH-HHHhccC-cH---HHHHHHH---HHHH------HHHHHHHHHHHHH
Confidence 00 000000123444443 3322111 11 2332222 1111 1245666666666
Q ss_pred hccc--C------HHHHHHHHHHHHHHHH--HhhhcchhhhHhHHHHHHHHhc----------------cCcHHHHHHHH
Q 000159 334 ITDV--N------IAVAVEAIQAIGNLAR--GLRTHFSGSSRFLLPVLLEKLK----------------EKKPTVAESLT 387 (2013)
Q Consensus 334 l~D~--N------~~V~~~A~~~l~~La~--~L~~~f~~~~~~llp~LL~klk----------------dkk~~V~~aa~ 387 (2013)
+.+. + ..+...+++|+..... .+... ....+++.++. +. +..+.+++++.
T Consensus 190 l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 265 (971)
T 2x1g_F 190 LKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCL 265 (971)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHH
T ss_pred HhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHH
Confidence 6522 1 2688889999998777 34333 44667777777 51 24678999999
Q ss_pred HHHHHHHHhcC-----CChHhHHHHHHH-------HhhcCCh---HHHHHHHHHHHHHHHhcChhH----------HHHh
Q 000159 388 QTLQAMHKAGC-----LNLVDVVEDVKT-------SVKNKVP---LVRSLTLNWVTFCIETSSKAA----------VLKV 442 (2013)
Q Consensus 388 ~aL~ai~~~~~-----~~l~~il~~l~~-------~l~~Knp---~vR~~~l~~L~~~l~~~~~~~----------l~~~ 442 (2013)
+|+..++.... ..+..+++.+.. ++.++.. ......+.++..+.+.+.... ....
T Consensus 266 ~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (971)
T 2x1g_F 266 KTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSIL 345 (971)
T ss_dssp HHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHH
Confidence 99999987411 012334444432 2233343 666677777777665543211 1245
Q ss_pred hhhHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH-HhC------ch----hHHHHHhhccHHHHHHHHHHHhcCCCC
Q 000159 443 HKDYVPICMECLND-----GTPEVRDAAFSVLAAIAK-SVG------MR----PLERSIEKLDDVRRNKLSEMIAGSGGD 506 (2013)
Q Consensus 443 l~~l~p~l~k~l~D-----s~~~VR~aA~~al~~l~~-~~G------e~----~~~~~l~~Ld~~~~kki~e~~~~~~~~ 506 (2013)
+..+++.+..++.. .+.+|+..+.+....+.. ... .. .+.+++..| +..++.+..-
T Consensus 346 l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-------l~~l~~~~~~- 417 (971)
T 2x1g_F 346 VHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHL-------TRILVRKSEQ- 417 (971)
T ss_dssp HHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH-------HHHHHHHTSC-
T ss_pred HHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH-------HHHHHHHhcC-
Confidence 66778888887743 578899988888777766 321 01 112222222 2222222100
Q ss_pred CCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCC
Q 000159 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (2013)
Q Consensus 507 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~ 586 (2013)
+... . ..
T Consensus 418 -p~~~---------------~--------------------------------------------------------~~- 424 (971)
T 2x1g_F 418 -PDEK---------------S--------------------------------------------------------LA- 424 (971)
T ss_dssp -CCTT---------------T--------------------------------------------------------TS-
T ss_pred -CCcc---------------c--------------------------------------------------------cc-
Confidence 0000 0 00
Q ss_pred CCCCHHH-------------HHHHhhccCc--------HHHHhhhcC-----CCHHHHHHHHHHHHHHHHhccC-cchHH
Q 000159 587 SEMSLEE-------------IESRLGSLIP--------ADTVGQLKS-----AVWKERLEAISSLRQQVEAVQN-LDQSV 639 (2013)
Q Consensus 587 ~~~S~ee-------------~e~~~~~~l~--------~~l~~~L~s-----~~Wk~Rl~ale~L~~~v~~~~~-~~~~~ 639 (2013)
..+.+| +-..+..+++ +-+...|.+ .+|+.|.+|+-.+..+.++... .....
T Consensus 425 -~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l 503 (971)
T 2x1g_F 425 -KWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI 503 (971)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH
T ss_pred -ccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 000110 0000111222 122233333 7999999999999887665322 12234
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHH
Q 000159 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIF 719 (2013)
Q Consensus 640 ~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl 719 (2013)
+.++..+...+. .|.+..|...++.++..+.+-.... ...+..+++.|+..+ |++++..|..++..+++.++..
T Consensus 504 ~~l~~~l~~l~~-~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~~~v~~~A~~al~~l~~~~~~~--- 577 (971)
T 2x1g_F 504 PRLMRVLAEIPY-EKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-NSSMSAQATLGLKELCRDCQLQ--- 577 (971)
T ss_dssp HHHHHHHHHSCT-TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHHHHhcCc-cccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHh---
Confidence 445554432211 2568889999999888877754432 235666777777666 4667777877777777654321
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCC--CcHhHHHHHHHHHHHHHHhhC-hhHHh
Q 000159 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKG 796 (2013)
Q Consensus 720 ~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~--~n~~VR~aA~~ll~~Ly~~~G-~~l~~ 796 (2013)
+.+++ ..++..+..+ +.. .+..+|..+.++++.+...++ .....
T Consensus 578 --l~p~~------------------------------~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 578 --LKPYA------------------------------DPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp --HHHHH------------------------------HHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred --ccccH------------------------------HHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 11111 1222222222 332 346788888999999887766 44666
Q ss_pred hhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHH
Q 000159 797 FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEA 876 (2013)
Q Consensus 797 ~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~ 876 (2013)
++..+-+.++..++.-.+.... .++ +-....+.++.
T Consensus 625 ~~~~ll~~l~~~l~~~~~~~~~------------------------------------~~~--------~~~~~~~~l~~ 660 (971)
T 2x1g_F 625 YLDIIVSPCFEELQAICQADSK------------------------------------TPA--------ARIRTIFRLNM 660 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------------------------------------CHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCC------------------------------------Chh--------hHHHHHHHHHH
Confidence 7766666666555543211000 000 00112334445
Q ss_pred HHHHHHhccccCC--------CC----ChhhHHHHHHhcccch--hHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHH
Q 000159 877 VNKILEEANKRIQ--------PA----GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (2013)
Q Consensus 877 l~~il~~a~~~I~--------~~----~~~eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (2013)
|..++..-...+. +. ...++++.+...+.+. +..|...++.+++.++..+|..|.+|+..+++.++
T Consensus 661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 661 ISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIV 740 (971)
T ss_dssp HHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 5555542211111 11 1356777777766443 55899999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHHHH----HHHHhcC-----CCChhhHHHHHHHHHHHhccCC
Q 000159 943 KCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVPYV----TTALTDA-----KLGAEGRKDLFDWLSKQLTGLS 1005 (2013)
Q Consensus 943 ~~L~D~k~~Vr~aa~~aL~~i~~~~gl~--------~ll~~l----~~~L~~~-----k~~p~~R~~~l~~L~~~l~~~~ 1005 (2013)
..+..... ..+...+..++...|-+ .++..+ ...|... ...|+++.+.+.++...+...+
T Consensus 741 ~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p 817 (971)
T 2x1g_F 741 ASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817 (971)
T ss_dssp HHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG
T ss_pred HHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCc
Confidence 88876432 34778888888877653 222221 1222211 1148899999999998887655
Q ss_pred C----CCC-hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1006 G----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1006 ~----~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
. ++. +..++..++.+|.-.+.++-+++..++..++..
T Consensus 818 ~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 818 QVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp GGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 3 233 556666667777666666777787777776655
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.08 E-value=4e-09 Score=134.07 Aligned_cols=378 Identities=12% Similarity=0.081 Sum_probs=252.9
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHh-ccC-cc------hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEA-VQN-LD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA 674 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~-~~~-~~------~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~ 674 (2013)
-+.+++.|.+.+...|..|+..|..++.. ..+ .. ...+.+++.|. .+.+..|+..++.+|..++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-----~~~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-----RKENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCC
Confidence 36788899999999999999999988753 111 11 23445555543 1237788889999988877521
Q ss_pred CCCchhhH-HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000159 675 TKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (2013)
Q Consensus 675 ~~~~~~~~-~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~-------~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~ 744 (2013)
.......+ ..++|.++.-+.+ +.+|..|..+|..++..... .-+++.++..+....++.++..++..|..
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11111111 2467888887765 57899999999998864311 12456666665435789999999999999
Q ss_pred HHHHhCCC-C-CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCC
Q 000159 745 AVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (2013)
Q Consensus 745 li~~fG~~-~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p 822 (2013)
+....+.. . .-+..+++.+..+ +.+.++.||..|..++..|.....+ ....+ -+
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~----~~------- 232 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPND------------KIQAV----ID------- 232 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHH------------HHHHH----HH-------
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcH------------HHHHH----HH-------
Confidence 88543121 1 1135678888888 9999999999999988776532111 00000 00
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000159 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2013)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~ 902 (2013)
..+.+.++..+.+.+|.+|..++..|..+........+.-.-..+++.|..
T Consensus 233 -----------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 283 (450)
T 2jdq_A 233 -----------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283 (450)
T ss_dssp -----------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH
Confidence 003356778888999999999999999887531110000000247888889
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhH
Q 000159 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMV 973 (2013)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--------~~ll 973 (2013)
.+.+.+..++..|+.+++.|+..-........ ..++|.++..|.+....||..|..+|..++..... ..++
T Consensus 284 ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i 363 (450)
T 2jdq_A 284 LLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363 (450)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 99999999999999999999853322233333 36899999999999999999999999999876321 2367
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC--------CCChhhh------HHHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 974 ~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--------~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
+.+...|.++ ++.+|..++..|...+..... ...+... +..+...+.+.+.+||+.|..++..+
T Consensus 364 ~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 364 KPLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp HHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7788888765 578888887777655432110 0111122 22355566888889999988887765
Q ss_pred H
Q 000159 1040 L 1040 (2013)
Q Consensus 1040 ~ 1040 (2013)
.
T Consensus 442 ~ 442 (450)
T 2jdq_A 442 F 442 (450)
T ss_dssp H
T ss_pred C
Confidence 5
No 29
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.05 E-value=4.6e-05 Score=106.58 Aligned_cols=353 Identities=12% Similarity=0.117 Sum_probs=202.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 000159 611 KSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 689 (2013)
Q Consensus 611 ~s~~Wk~Rl~ale~L~~~v~~~~~-~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 689 (2013)
.+.+|+.|.+++-.++.+.+.... .......++..+. ++.+.+..|...++.++..+.+-... ....+..+++.+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~---~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~~l 534 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP---RISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLPLV 534 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG---GSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 346899999999999887766332 2223344555442 45555677777777777665543211 112333344444
Q ss_pred HhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCC
Q 000159 690 SERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGL 768 (2013)
Q Consensus 690 veKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL 768 (2013)
+..+.+ |+|+..++..+..+++..+..-.+ +..++..+..+ +
T Consensus 535 ~~~l~~------------------------------------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~-l 577 (963)
T 2x19_B 535 LHALGN------------------------------------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV-L 577 (963)
T ss_dssp HHHTTC------------------------------------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH-H
T ss_pred HHHhCC------------------------------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-h
Confidence 444444 444444444444444433221111 23444444443 4
Q ss_pred CC--CcHhHHHHHHHHHHHHHHhhC-hhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 769 QS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 769 ~~--~n~~VR~aA~~ll~~Ly~~~G-~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
.. .+..+|..+.++++.+...++ .....|+..+-+.+...++.-.... .
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~----------------------- 629 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-----P----------------------- 629 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-----S-----------------------
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-----C-----------------------
Confidence 32 356788888888888887776 5566777666665555554432100 0
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCC-----------------CC----ChhhHHHHHHhcc
Q 000159 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-----------------PA----GTGELFGGLRGRL 904 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~-----------------~~----~~~eL~~~L~~rL 904 (2013)
.++. -+.+...++.+..++........ +. .+..+++.+...+
T Consensus 630 ---------~~~~--------~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 692 (963)
T 2x19_B 630 ---------NPSN--------KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL 692 (963)
T ss_dssp ---------CHHH--------HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CHHH--------HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 0000 01122334444444432111110 00 1234445444444
Q ss_pred cc--hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhH----H
Q 000159 905 YD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMV----P 974 (2013)
Q Consensus 905 ~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll----~ 974 (2013)
.. .+..+...++.+++.++..+|..|.+|+..+++.++..+..... ......+..++...+.+ ..+ +
T Consensus 693 ~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~ 769 (963)
T 2x19_B 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFL 769 (963)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHH
T ss_pred HhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 21 24578999999999999999999999999999988887765321 23455666666633321 222 2
Q ss_pred HHH----HHHh-cCCCChhhHHHHHHHHHHHhccCCC----CCC-hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 975 YVT----TALT-DAKLGAEGRKDLFDWLSKQLTGLSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 975 ~l~----~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~----~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
.+. ..+. +....|++|...+..+...+...+. .+. +..++..+..+|.+.+.+|-+++...+..+....+
T Consensus 770 ~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 770 LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 222 2222 2111489999999999888876543 233 56667778888999999999999999998887765
Q ss_pred -hhHHHHHh
Q 000159 1045 -QETIEKNL 1052 (2013)
Q Consensus 1045 -~~~~~~~l 1052 (2013)
.+.+..++
T Consensus 850 ~~~~~~~~~ 858 (963)
T 2x19_B 850 EVESVGKVV 858 (963)
T ss_dssp SSCHHHHHT
T ss_pred ChHHHHHHH
Confidence 33444443
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.04 E-value=3.6e-09 Score=138.13 Aligned_cols=379 Identities=13% Similarity=0.080 Sum_probs=254.2
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc--c-----hHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHHHHHHc
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--D-----QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAATA 674 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~-----~~~~~lv~~L~~~pgl~Ds-N~qV~~~~Le~l~~l~~~~ 674 (2013)
-+.+++.|.+.++..|..|+..|..++...... . ...+.++.+ +.+. +..|+..++.+|..++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~------L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF------MRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHT------TSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHH------hCCCCCHHHHHHHHHHHHHHhCCC
Confidence 477889999999999999999999887542111 0 112334443 3444 7788888888888776521
Q ss_pred CCCchhhH-HHHHHHHHhhhc--ChhhhHHHHHHHHHHHhhhC--hh-----HHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000159 675 TKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVG--PG-----FIFERLYKIMKDHKNPKVLSEGILWMVS 744 (2013)
Q Consensus 675 ~~~~~~~~-~~il~~LveKlg--D~K~r~~a~e~L~~l~e~~~--~~-----~Vl~~L~~~l~~~KnpKv~~~~l~~L~~ 744 (2013)
+......+ ..+++.|+..+. +..++..|..+|..++.... .. -+++.|+..+ .+.++.++..++..|..
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 11111111 234677776665 45789999999999886421 11 2355566665 56889999999999998
Q ss_pred HHHHhCCCC--CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCC
Q 000159 745 AVEDFGVSH--LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (2013)
Q Consensus 745 li~~fG~~~--l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p 822 (2013)
+....+... .-...+++.+..+ +.+.++.||..|..+|+.|...... ....+ ++
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~------------~~~~~---~~-------- 297 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQE------------AIQAV---ID-------- 297 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCHH------------HHHHH---HH--------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCHH------------HHHHH---Hh--------
Confidence 885431211 1234678888888 9999999999999999877532111 11111 00
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000159 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2013)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~ 902 (2013)
..+.+.++..+.+.+|.+|..|+..|..++.........-.-..+++.|..
T Consensus 298 -----------------------------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 298 -----------------------------VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp -----------------------------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 003456778888899999999999999887421100000001357888889
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hh
Q 000159 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DK 971 (2013)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----------~~ 971 (2013)
.|.+.+..++..|+.+++.|+.........++ ..++|.++..|.+....+|..|..+|..++...+. ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 99999999999999999998863222233333 35789999999999999999999999999876432 23
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC--------CCChh------hhHHHHHhhcCCCChHHHHHHHHHHH
Q 000159 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAA------HLLKPASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--------~~~~~------~ll~pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
+++.+...|.++ ++.+|..++..|...+..... ..... ..+..|...+.|.+.+|++.|..++.
T Consensus 429 ~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 429 CIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp CHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677788888765 588888888877766543211 01111 12344666779999999999988887
Q ss_pred HHHHHc
Q 000159 1038 EILRAG 1043 (2013)
Q Consensus 1038 ~l~~~~ 1043 (2013)
.+...-
T Consensus 507 ~~~~~~ 512 (530)
T 1wa5_B 507 TYFGEE 512 (530)
T ss_dssp HHSSSC
T ss_pred HHCCcc
Confidence 665443
No 31
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.04 E-value=1.6e-05 Score=111.28 Aligned_cols=604 Identities=11% Similarity=0.062 Sum_probs=304.9
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcc----hhhhH-hHHH
Q 000159 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF----SGSSR-FLLP 369 (2013)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~-~llp 369 (2013)
+.+=..|++|-+.|..+-+.| +....+..++. +.+..|+..|+.++....+.--..+ ..+++ .++.
T Consensus 18 ~~d~~~r~~A~~~L~~~~~~p--------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~ 89 (971)
T 2x1g_F 18 RSNSQNQAITHEWLTDAEASP--------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILE 89 (971)
T ss_dssp TSTTTC----CHHHHHTTTST--------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHH
Confidence 344456888888887764433 22223344454 6678899999999988876433333 22333 3333
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCC-ChHhHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHh---cC----
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCL-NLVDVVEDVKTSVKNK------VPLVRSLTLNWVTFCIET---SS---- 435 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~-~l~~il~~l~~~l~~K------np~vR~~~l~~L~~~l~~---~~---- 435 (2013)
.+.... ...+.||..+..++..++.+ .. ....+++++...+++. ++..+...+.+|..+.+. ..
T Consensus 90 ~l~~~~-~~~~~vr~kl~~~la~i~~~-~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~ 167 (971)
T 2x1g_F 90 SIVRFA-GGPKIVLNRLCISLGAYIVH-MLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVK 167 (971)
T ss_dssp HHHHHT-TSCHHHHHHHHHHHHHHHHH-TTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHHH-ccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHH
Confidence 333332 23478999999999999988 33 6778999999888765 677888888888866542 11
Q ss_pred ----hhHHHHhhhhHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHH--hCchhHHHHHhhccHHHHHHHH-HHH
Q 000159 436 ----KAAVLKVHKDYVPICMECLNDGT--------PEVRDAAFSVLAAIAKS--VGMRPLERSIEKLDDVRRNKLS-EMI 500 (2013)
Q Consensus 436 ----~~~l~~~l~~l~p~l~k~l~Ds~--------~~VR~aA~~al~~l~~~--~Ge~~~~~~l~~Ld~~~~kki~-e~~ 500 (2013)
+..+...++.+++.+..++.+.. .+++.++.+|+..+... ++.....++++.+- . |. .++
T Consensus 168 r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~----~-L~~~~~ 242 (971)
T 2x1g_F 168 RVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL----E-VVHKCY 242 (971)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH----H-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHH----h-hhhhhc
Confidence 12233445677777777775332 27999999999988875 33221112222110 0 00 000
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccc----cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCc
Q 000159 501 AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA----SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (2013)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~----s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~ 576 (2013)
....+....... . ..+..+..+. ..... +.
T Consensus 243 ~~~~~~~~~~~~------------~----~~~~~~~~a~~~l~~i~~~--~~---------------------------- 276 (971)
T 2x1g_F 243 WPCIHAGDGCMT------------A----DENELAESCLKTMVNIIIQ--PD---------------------------- 276 (971)
T ss_dssp SSSCC---CCCC------------H----HHHHHHHHHHHHHHHHHHC--SG----------------------------
T ss_pred cccccccccccC------------c----CCcHHHHHHHHHHHHHHcC--cc----------------------------
Confidence 000000000000 0 0000000000 00000 00
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccC--cHHHHhhhcCCC----HHHHHHHHHHHHHHHHhc----------------cC
Q 000159 577 LTEAPEDVEPSEMSLEEIESRLGSLI--PADTVGQLKSAV----WKERLEAISSLRQQVEAV----------------QN 634 (2013)
Q Consensus 577 ~~~~~~~~~~~~~S~ee~e~~~~~~l--~~~l~~~L~s~~----Wk~Rl~ale~L~~~v~~~----------------~~ 634 (2013)
. . + ...-+...+..++ ...+...+.+.+ |..+ ...+-+..+.+.. +.
T Consensus 277 ---~-~---~---~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (971)
T 2x1g_F 277 ---C-H---N---YPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIV-HIYMLFVSSVERHSTLLLSGITSADPELSIL 345 (971)
T ss_dssp ---G-G---G---CHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHH-HHHHHHHHHHHHTHHHHHHHHHTCCHHHHHH
T ss_pred ---c-c---c---cHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHH-HHHHHHHHHHHHHHHHHHHHhccCcccccHH
Confidence 0 0 0 0000100000000 011111222233 3222 1122222222110 00
Q ss_pred cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------C----CchhhHHHHHHHHHhhhc--------
Q 000159 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------K----FPKKCVVLCLLGISERVA-------- 694 (2013)
Q Consensus 635 ~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~--------~----~~~~~~~~il~~LveKlg-------- 694 (2013)
.....+.++.+. ..||+...+..|...++++|..+++... . .....+..+++.++.++.
T Consensus 346 l~~~l~~ll~~~-~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~ 424 (971)
T 2x1g_F 346 VHRIVQEILHCT-DKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLA 424 (971)
T ss_dssp HHHHHHHHHHHH-HCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTS
T ss_pred HHHHHHHHHHHH-cCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 111123333332 2466655556688899999988876221 1 113456667777787762
Q ss_pred --Ch-------hhhHHHHHHHHHHHhhhChhHHHHHHHHHhh---h-----CCChhHHHHHHHHHHHHHHHhCCCC-CCh
Q 000159 695 --DI-------KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D-----HKNPKVLSEGILWMVSAVEDFGVSH-LKL 756 (2013)
Q Consensus 695 --D~-------K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~---~-----~KnpKv~~~~l~~L~~li~~fG~~~-l~~ 756 (2013)
|. ..|..+.++|..++...+ +.+++.++..+. . ..+|+.+.+++..+..+.+...... -.+
T Consensus 425 ~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l 503 (971)
T 2x1g_F 425 KWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI 503 (971)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 10 246778889999888776 455555554331 2 2789999999999888765433221 124
Q ss_pred hhHHHHHHhcCC-CCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccC
Q 000159 757 KDLIDFCKDTGL-QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (2013)
Q Consensus 757 k~li~~l~~~gL-~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~ 835 (2013)
..+++.+..+ . .+.++.||..|..+++.+..+++... .|+..+-+.++..+
T Consensus 504 ~~l~~~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-------------------------- 555 (971)
T 2x1g_F 504 PRLMRVLAEI-PYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-------------------------- 555 (971)
T ss_dssp HHHHHHHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHhc-CccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh--------------------------
Confidence 5566655543 2 24689999999999999988887532 34444333333333
Q ss_pred CCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc--hhHHHHH
Q 000159 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVM 913 (2013)
Q Consensus 836 s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D--sN~~V~~ 913 (2013)
| .+++..|...+..+++++...+.|. +.+|+..|...+.. .......
T Consensus 556 ----------------------------~--~~v~~~A~~al~~l~~~~~~~l~p~-~~~ll~~l~~~l~~~~~~~~~~~ 604 (971)
T 2x1g_F 556 ----------------------------N--SSMSAQATLGLKELCRDCQLQLKPY-ADPLLNACHASLNTGRMKNSDSV 604 (971)
T ss_dssp ----------------------------H--SSCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHSTTSCHHHHH
T ss_pred ----------------------------C--hHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHcCCCCChHHHH
Confidence 1 2334556667777776654555555 47788887777754 3467888
Q ss_pred HHHHHHHHHHHHhC-hhhHhhhhhHHHHHHHHhC----CC--cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCC
Q 000159 914 ATLITLGAVASAMG-PAVEKSSKGVLSDILKCLG----DN--KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLG 986 (2013)
Q Consensus 914 ~Al~~l~~La~alg-~~~~~~~~~llp~ll~~L~----D~--k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~ 986 (2013)
..+++++.++.+++ ..+.+|+..++++++..+. .. ...-+.....+++.+.. +...+... ..
T Consensus 605 ~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~----------~~~~l~~~-~~ 673 (971)
T 2x1g_F 605 RLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST----------LFSSLNTD-VD 673 (971)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH----------HHHHHTC----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------HHhhcCCC-cC
Confidence 88999999998876 5677888888888877654 21 22233334444443321 11112110 00
Q ss_pred hhhHHHH--HHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000159 987 AEGRKDL--FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2013)
Q Consensus 987 p~~R~~~--l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2013)
+ .+.+. -.-+..++ ..+..++.-++.... .+.+|.+.+..++..+...+|.+ +.+++
T Consensus 674 ~-~~~~~~~~~~~~~~~------~~i~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~-~~p~l 732 (971)
T 2x1g_F 674 E-QATDQPIVQPVLLVM------QRTMPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSS-FQPML 732 (971)
T ss_dssp -----------CCHHHH------HTTHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred c-ccccccCCCchHHHH------HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhh-ccccH
Confidence 0 00000 00000001 122333333333332 46789999999999999888876 55553
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.01 E-value=1e-06 Score=116.96 Aligned_cols=462 Identities=11% Similarity=0.034 Sum_probs=257.9
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
......+.+++..+.+++...|+-...++..++... + ..+-.++..+.+-|.|+++.||..|..+|+.+. .
T Consensus 66 ~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~----e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~ 136 (618)
T 1w63_A 66 YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-Q----DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----S 136 (618)
T ss_dssp CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-H----HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----C
T ss_pred CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-c----HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----C
Confidence 345667777888888999999988777766655432 1 123457788899999999999999988887653 2
Q ss_pred hhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000159 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (2013)
Q Consensus 479 ~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~ 558 (2013)
..+ ++.+-
T Consensus 137 ~~~---~~~l~--------------------------------------------------------------------- 144 (618)
T 1w63_A 137 SEM---CRDLA--------------------------------------------------------------------- 144 (618)
T ss_dssp HHH---HHHHH---------------------------------------------------------------------
T ss_pred HHH---HHHHH---------------------------------------------------------------------
Confidence 211 11100
Q ss_pred CCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchH
Q 000159 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 638 (2013)
Q Consensus 559 ~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~ 638 (2013)
+.+...|.|.+.-.|..|+..+..++....+..
T Consensus 145 ---------------------------------------------~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-- 177 (618)
T 1w63_A 145 ---------------------------------------------GEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-- 177 (618)
T ss_dssp ---------------------------------------------HHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred ---------------------------------------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence 123334445555556666666666655422211
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc-----------------ChhhhHH
Q 000159 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA-----------------DIKTRAH 701 (2013)
Q Consensus 639 ~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg-----------------D~K~r~~ 701 (2013)
+.++..+. ..+.|.|..|+..++.++..+....++. ...+..++|.++..+. ++-.+..
T Consensus 178 -~~~~~~l~--~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 -EMFLPATK--NLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp -GGGGGGTT--TSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred -HHHHHHHH--HHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 11111111 2356667677766666666554321110 0122233444443322 2333444
Q ss_pred HHHHHHHHHhhhChh------HHHHHHHHHhh--hCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcH
Q 000159 702 AMKCLTTFSEAVGPG------FIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773 (2013)
Q Consensus 702 a~e~L~~l~e~~~~~------~Vl~~L~~~l~--~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~ 773 (2013)
+.++|..++... ++ -++..++.... .+.++-|..+++..+..+ +...--....+..+..+ +.+.++
T Consensus 254 il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~~~l~~~a~~~L~~~-L~~~d~ 327 (618)
T 1w63_A 254 ILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSESGLRVLAINILGRF-LLNNDK 327 (618)
T ss_dssp HHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHH-HTCSST
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHH-HhCCCC
Confidence 555555554321 11 13333333211 233456777777766542 22110012245556666 788899
Q ss_pred hHHHHHHHHHHHHHHhhChhHHhhh-------hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 000159 774 ATRNATIKLLGALHKFVGPDIKGFL-------ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (2013)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L-------~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lp 846 (2013)
+||..|...++.+....+..+..++ .+-.+.+...--+-+-++..
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~---------------------------- 379 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN---------------------------- 379 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC----------------------------
T ss_pred chHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc----------------------------
Confidence 9999999999888765433232222 11111111111011111110
Q ss_pred CcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHh
Q 000159 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 926 (2013)
Q Consensus 847 r~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~al 926 (2013)
...+ ..+..+|+.-+.+.+-..|.+++..+..+.. +..+. +...+..|...|.+.+..+...++..+..+...
T Consensus 380 ~~nv-~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~----k~~~~-~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~- 452 (618)
T 1w63_A 380 GNNI-RGMMKELLYFLDSCEPEFKADCASGIFLAAE----KYAPS-KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN- 452 (618)
T ss_dssp SSST-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----SSCCC-HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH-
T ss_pred cccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HhCcc-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc-
Confidence 0011 1244667777777888899999999998875 22233 477788888888877777777777777777754
Q ss_pred ChhhHhhhhhHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHhcC-------------chhhHHHHHHHHhcCCCChhhHH
Q 000159 927 GPAVEKSSKGVLSDILKCLGD--NKKHMRECTLTVLDAWLAAVH-------------LDKMVPYVTTALTDAKLGAEGRK 991 (2013)
Q Consensus 927 g~~~~~~~~~llp~ll~~L~D--~k~~Vr~aa~~aL~~i~~~~g-------------l~~ll~~l~~~L~~~k~~p~~R~ 991 (2013)
.+++.. ..+..++..+.+ ....+..++.-+|+.+...+. ...+++.+...+.+...++.+|.
T Consensus 453 ~p~l~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~ 529 (618)
T 1w63_A 453 SVEMHA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRG 529 (618)
T ss_dssp SCSTHH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred ChhHHH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 334333 234455555543 223344567888888887541 23355555565542112588999
Q ss_pred HHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHH
Q 000159 992 DLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 992 ~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
.++..+.+.+...+ +....+.. +-.+..|.+.|||..|..++.-+
T Consensus 530 ~~lta~~Kl~~~~~---~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 530 YALTAIMKLSTRFT---CTVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHHHHHHTTCS---SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc---chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999988776554 22444444 44567899999999999766544
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.99 E-value=6.3e-08 Score=126.20 Aligned_cols=384 Identities=11% Similarity=0.051 Sum_probs=261.1
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccCCCCchHHH--hhhhhhHhhhcCCc-HHHHHHHHHHHHHHHHHhchhhhhh-H
Q 000159 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADSN-APVQDKALDALIAYLKAADADAGRY-A 91 (2013)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~--~~~~~~~k~v~DsN-~~vqe~~leal~~~v~~~~~~~~~~-~ 91 (2013)
|.+.|.+.+|..|..|...|.+.+....++.-..+. ...+.+.+++.+.+ +.+|..++.+|..+...... .... .
T Consensus 79 lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~ 157 (528)
T 4b8j_A 79 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE-NTKVVI 157 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH-HHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 567888999999999999999887653222111121 23455566777776 99999999999888754222 2222 1
Q ss_pred -HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCC
Q 000159 92 -KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAK 162 (2013)
Q Consensus 92 -~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~~--~-----~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~fG~~ 162 (2013)
...++.|+.-+-...+.+++.|..++..++.... . ..++..|+..+ .+.++.++..++.+|..+.......
T Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~ 237 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP 237 (528)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC
T ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 2477778776434688999999998888875321 1 13466777777 6788999999999998876643221
Q ss_pred C-cChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhh
Q 000159 163 I-IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241 (2013)
Q Consensus 163 ~-i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~ 241 (2013)
. .-...+++.|..++.+.|..||..|..++..+.. +.+ .. .+.+ +
T Consensus 238 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~--~~~---~~---------~~~~---~----------------- 283 (528)
T 4b8j_A 238 SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD--GTN---DK---------IQAV---I----------------- 283 (528)
T ss_dssp CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS--SCH---HH---------HHHH---H-----------------
T ss_pred cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCH---HH---------HHHH---H-----------------
Confidence 1 1235689999999999999999998777665542 111 00 0000 0
Q ss_pred hHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q 000159 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 321 (2013)
Q Consensus 242 ~~~~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~ 321 (2013)
. .| + + +.+...+.+.+|..|..|+..|..++.+..-...
T Consensus 284 ----------~-~g-------------------------~---v--~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 284 ----------E-AG-------------------------V---C--PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp ----------H-TT-------------------------C---H--HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ----------H-cC-------------------------H---H--HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 0 00 0 1 2455667778899999999999988753210000
Q ss_pred C--hHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc
Q 000159 322 D--FTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG 397 (2013)
Q Consensus 322 ~--~~~l~~~L~k~l~D~-N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~ 397 (2013)
. -..+++.|...+.+. +..+...|+.+|+.|+.+-....... -..++|.|+..+.+....++..+..+|..+...+
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 0 023577788888877 99999999999999987433222222 2367899999999999999999999999988751
Q ss_pred CCC----h--HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhhh--hHHHHHHHHhcCCCHH
Q 000159 398 CLN----L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVHK--DYVPICMECLNDGTPE 460 (2013)
Q Consensus 398 ~~~----l--~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l~--~l~p~l~k~l~Ds~~~ 460 (2013)
... + ..+++.|+..+.+.++.++..++..|..++...... .+...+. ..+..+..+..+.+++
T Consensus 403 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~ 482 (528)
T 4b8j_A 403 SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE 482 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHH
Confidence 100 1 245778888999999999999999999988643220 1111121 2356778889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000159 461 VRDAAFSVLAAIAKS 475 (2013)
Q Consensus 461 VR~aA~~al~~l~~~ 475 (2013)
|++.|...+..+...
T Consensus 483 v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 483 IYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999998876543
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.98 E-value=1e-08 Score=133.75 Aligned_cols=379 Identities=12% Similarity=0.085 Sum_probs=254.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhcc-Cc-c-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NL-D-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~-~-----~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2013)
+.+++.|.+.++..|..|+..|..++.... +. . ...+.|+.+|.. +.+..++..++.+|..++...+.
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR-----EDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC-----TTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC-----CCCHHHHHHHHHHHHHHhCCCHH
Confidence 678899999999999999999998876532 11 1 124556666531 22377888899998888763211
Q ss_pred CchhhH-HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhCh--hH-----HHHHHHHHhhhCCChhHHHHHHHHHHHHH
Q 000159 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (2013)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~--~~-----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li 746 (2013)
.....+ ..+++.|+.-+.+ ..++..|..+|..++..... .. +++.|+..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 1367888887765 46899999999999864221 11 35566666546778999999999999887
Q ss_pred HHhCCCCC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCc
Q 000159 747 EDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 825 (2013)
Q Consensus 747 ~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~ 825 (2013)
........ -...+++.+..+ +.+.++.||..|..+|+.|......... .+ + .
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~------------~~---~-~---------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKIQ------------AV---I-E---------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHHH------------HH---H-H----------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHH------------HH---H-H----------
Confidence 64322111 135678888888 9999999999999998876532111111 00 0 0
Q ss_pred ccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc
Q 000159 826 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (2013)
Q Consensus 826 R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~ 905 (2013)
..+.+.++..+.+.+|.+|..|+..|..++.........-.-..+++.|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 003456788888999999999999999887521110100001356788888888
Q ss_pred ch-hHHHHHHHHHHHHHHHHHhChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHH
Q 000159 906 DS-NKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPY 975 (2013)
Q Consensus 906 Ds-N~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--------~~ll~~ 975 (2013)
+. +..|+..|+.+++.|+..-........ ..++|.++..|.+....++..|..+|..++...+. ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 88 999999999999999863222222222 26789999999999999999999999999887331 246677
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHhccCCC--------CCChhh------hHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000159 976 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 976 l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--------~~~~~~------ll~pl~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+...|.++ ++.++..++..|...+..... ...+.. .+..+.....+.+.+|++.|..++..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88888765 578888877777665542211 111111 23446667789999999999988877654
Q ss_pred H
Q 000159 1042 A 1042 (2013)
Q Consensus 1042 ~ 1042 (2013)
.
T Consensus 497 ~ 497 (528)
T 4b8j_A 497 D 497 (528)
T ss_dssp -
T ss_pred C
Confidence 3
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.97 E-value=1.2e-06 Score=116.39 Aligned_cols=525 Identities=10% Similarity=0.083 Sum_probs=274.5
Q ss_pred HHHHHHHHhhccCCC--CchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcCCChh
Q 000159 31 ANIDLAALCDSITDP--KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPK 108 (2013)
Q Consensus 31 ayeeL~~~~~~~~d~--~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~ 108 (2013)
++.++++.+++.... .......-..-+++-+.+.+....-.++.-+..+.-. |.+......+++..+- +.+-.
T Consensus 11 ~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~-G~d~~~~~~~vik~~~----s~~~~ 85 (618)
T 1w63_A 11 RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHML-GYPAHFGQLECLKLIA----SQKFT 85 (618)
T ss_dssp CHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHT-TCCCGGGHHHHHHHHH----SSSHH
T ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHc-CCCCcchHHHHHHHHc----CCchH
Confidence 366777777653210 0011112233455566666655555556555544333 3333333344443222 24666
Q ss_pred HHHHHHHHHHHHHhhhhhh---hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCCChHHH
Q 000159 109 TVEKAQAVFMLWVELEAVD---VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVR 185 (2013)
Q Consensus 109 ~k~~A~~~ll~~~E~~~~~---~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~VR 185 (2013)
.|..+--.+..|.+. +++ -++..|.+.+.++||-++..|+.+|..+ |...+ ...+++.+.++|.|+++.||
T Consensus 86 ~Krl~Yl~~~~~~~~-~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~~~~-~~~l~~~l~~~L~~~~~~VR 159 (618)
T 1w63_A 86 DKRIGYLGAMLLLDE-RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCM----GSSEM-CRDLAGEVEKLLKTSNSYLR 159 (618)
T ss_dssp HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHH----CCHHH-HHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhc----CCHHH-HHHHHHHHHHHHcCCCHHHH
Confidence 677664455555542 344 3567888999999999999999998765 32111 35678999999999999999
Q ss_pred HHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCC
Q 000159 186 ASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTAD 265 (2013)
Q Consensus 186 ~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~ 265 (2013)
..|..++..+|+...+ .+.. +++.+
T Consensus 160 k~A~~al~~l~~~~p~-~v~~-~~~~l----------------------------------------------------- 184 (618)
T 1w63_A 160 KKAALCAVHVIRKVPE-LMEM-FLPAT----------------------------------------------------- 184 (618)
T ss_dssp HHHHHHHHHHHHHCGG-GGGG-GGGGT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHChH-HHHH-HHHHH-----------------------------------------------------
Confidence 9999999999986543 2321 11110
Q ss_pred CCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcC-CCC---CCCChHHHHHHHHHHhc------
Q 000159 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI---APGDFTEVCRTLKKLIT------ 335 (2013)
Q Consensus 266 ~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-pki---~~~~~~~l~~~L~k~l~------ 335 (2013)
.+.+.+.+-..+..|+..|..+... |.. ...-...++..|...+.
T Consensus 185 -------------------------~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~ 239 (618)
T 1w63_A 185 -------------------------KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPE 239 (618)
T ss_dssp -------------------------TTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTT
T ss_pred -------------------------HHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 0011112222222333333333210 000 00011223333333211
Q ss_pred -----ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHhcCCCh---HhH
Q 000159 336 -----DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK---EKKPTVAESLTQTLQAMHKAGCLNL---VDV 404 (2013)
Q Consensus 336 -----D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klk---dkk~~V~~aa~~aL~ai~~~~~~~l---~~i 404 (2013)
..+.-.....+++++.++..- +........+++.++.... .....|+- +|+.+++.- .... ..+
T Consensus 240 ~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~---ea~~~i~~l-~~~~~l~~~a 314 (618)
T 1w63_A 240 HDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILY---ETVLTIMDI-KSESGLRVLA 314 (618)
T ss_dssp TCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHH---HHHHHHHHS-CCCHHHHHHH
T ss_pred ccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHH---HHHHHHHhc-CCCHHHHHHH
Confidence 124444445556666655320 1111122334444444332 22223333 334444432 1111 134
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHH
Q 000159 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (2013)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~ 484 (2013)
++.+...+.++++.+|..++.+|..+....+. .+....+.+..|+.|.+..||..|.+++..+. .+..+..+
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~---~~~nv~~i 386 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHN-----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALV---NGNNIRGM 386 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHC---CSSSTHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHc---ccccHHHH
Confidence 56666778889999999999999988765432 23556778899999999999999988876553 33323322
Q ss_pred HhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 000159 485 IEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSA 564 (2013)
Q Consensus 485 l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~ 564 (2013)
+. .+.+++
T Consensus 387 v~--------eL~~~l---------------------------------------------------------------- 394 (618)
T 1w63_A 387 MK--------ELLYFL---------------------------------------------------------------- 394 (618)
T ss_dssp HH--------HHHHHH----------------------------------------------------------------
T ss_pred HH--------HHHHHH----------------------------------------------------------------
Confidence 21 121221
Q ss_pred CCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc-CcchHHHHHH
Q 000159 565 KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILV 643 (2013)
Q Consensus 565 ~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~~~~~~~lv 643 (2013)
.+.+-..|.+++..+........ ....+.+.++
T Consensus 395 ----------------------------------------------~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll 428 (618)
T 1w63_A 395 ----------------------------------------------DSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIM 428 (618)
T ss_dssp ----------------------------------------------HHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred ----------------------------------------------HhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 11222234444444444433321 1112334444
Q ss_pred HHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhh----------
Q 000159 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV---------- 713 (2013)
Q Consensus 644 ~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~---------- 713 (2013)
..|... +..|...++..+..++.+.++.....+..++..+-+.+........+..+|..+++..
T Consensus 429 ~lL~~~------~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~ 502 (618)
T 1w63_A 429 RVLTTA------GSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEP 502 (618)
T ss_dssp HHHHHT------GGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHhc------cchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccc
Confidence 444321 1123333444555555555554333333333333222222333334566666666533
Q ss_pred ---ChhHHHHHHHHHhhh-CCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 714 ---GPGFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 714 ---~~~~Vl~~L~~~l~~-~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
.+..++..+...+.. ..++.++..++..+.++...++. ....+...+..+ ..+.|.+||+-|...+.-+.
T Consensus 503 ~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~---~~~~l~~~L~~~-~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 503 IQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC---TVNRIKKVVSIY-GSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc---hHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHc
Confidence 344455555554322 57899999999999888776542 134455666666 88999999999998766554
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.97 E-value=8.5e-07 Score=120.88 Aligned_cols=501 Identities=12% Similarity=0.058 Sum_probs=288.0
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----
Q 000159 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (2013)
Q Consensus 322 ~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~---- 397 (2013)
.|..-+..+...|.+.+..+...+++.+..+... -.....+|.|+..+.+..+.|++.+..+|..+..+.
T Consensus 112 ~~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 112 QFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3444456666677767777777777777654321 234678999999999999999999999999887530
Q ss_pred -CCChHhHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChh--HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 398 -CLNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 398 -~~~l~~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
......+++.|+..|.+ .++.+|..++..|..+.. .... .+.. ...+|.|+.+|.+.++.||..|..+|..++
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 01124678888888875 489999999999988433 2211 1111 358899999999999999999999999888
Q ss_pred HHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCC
Q 000159 474 KSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPA 553 (2013)
Q Consensus 474 ~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~ 553 (2013)
....+. ++.+.+ ..
T Consensus 263 ~~~~~~-------------~~~v~~---~g-------------------------------------------------- 276 (780)
T 2z6g_A 263 LHQEGA-------------KMAVRL---AG-------------------------------------------------- 276 (780)
T ss_dssp HHSTTH-------------HHHHHH---TT--------------------------------------------------
T ss_pred CCChhh-------------HHHHHH---cC--------------------------------------------------
Confidence 654331 111111 00
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc
Q 000159 554 SKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ 633 (2013)
Q Consensus 554 ~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~ 633 (2013)
.-+.++..|.+.+|+.|..++..|..+.....
T Consensus 277 ------------------------------------------------~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 277 ------------------------------------------------GLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp ------------------------------------------------HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------------------------------------CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 00234455556666666666655553332100
Q ss_pred C------cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHH
Q 000159 634 N------LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLT 707 (2013)
Q Consensus 634 ~------~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~ 707 (2013)
+ .....+.|++++.. .....+...+..++..+.. + ...+..
T Consensus 309 e~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~Ls~-~---------------------~~~~~~------ 355 (780)
T 2z6g_A 309 ESKLIILASGGPQALVNIMRT-----YTYEKLLWTTSRVLKVLSV-C---------------------SSNKPA------ 355 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHT-S---------------------TTHHHH------
T ss_pred HHHHHHHHcCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhc-C---------------------hHHHHH------
Confidence 0 00123344444321 0111122222333332221 1 011100
Q ss_pred HHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 708 TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 708 ~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
+.+ .-+++.|+..+ .+.++.++..++..|..+...... ......+++.+..+ +.+.++.||..|..+|+.|.
T Consensus 356 -i~~----~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 356 -IVE----AGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp -HHH----TTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHT
T ss_pred -HHH----hchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchh-hhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Confidence 000 11334444443 455777888888777777754322 22346788888888 99999999999999998774
Q ss_pred HhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC-CC
Q 000159 788 KFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PD 866 (2013)
Q Consensus 788 ~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d-~~ 866 (2013)
... +.....+ -+. ...+.|+..+.+ .+
T Consensus 428 ~~~-~~~~~~i---------------~~~------------------------------------g~i~~Lv~lL~~~~~ 455 (780)
T 2z6g_A 428 CNN-YKNKMMV---------------CQV------------------------------------GGIEALVRTVLRAGD 455 (780)
T ss_dssp SSC-HHHHHHH---------------HTT------------------------------------THHHHHHHHHHHHTT
T ss_pred hCC-HHHHHHH---------------HHC------------------------------------CCHHHHHHHHHccCC
Confidence 321 1111110 000 011234444433 34
Q ss_pred h-HHHHHHHHHHHHHHHhcccc---CCCCC-hhhHHHHHHhcccchh-HHHHHHHHHHHHHHHHHhChhhHhhh--hhHH
Q 000159 867 W-KVRLESIEAVNKILEEANKR---IQPAG-TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (2013)
Q Consensus 867 W-k~R~eale~l~~il~~a~~~---I~~~~-~~eL~~~L~~rL~DsN-~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (2013)
| .+|..|+..|..|.... .. .+... -...++.|...|.+.+ ..|+..|+.+++.|+. +......+ ..++
T Consensus 456 ~~~v~~~Al~aL~nL~~~~-~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i 532 (780)
T 2z6g_A 456 REDITEPAICALRHLTSRH-QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAI 532 (780)
T ss_dssp CHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCH
Confidence 4 78888888887764210 00 00000 0234677888887666 4899999999999984 33322211 2467
Q ss_pred HHHHHHhCCCc----------------------HHHHHHHHHHHHHHHHh------cCchhhHHHHHHHHhcCCCChhhH
Q 000159 939 SDILKCLGDNK----------------------KHMRECTLTVLDAWLAA------VHLDKMVPYVTTALTDAKLGAEGR 990 (2013)
Q Consensus 939 p~ll~~L~D~k----------------------~~Vr~aa~~aL~~i~~~------~gl~~ll~~l~~~L~~~k~~p~~R 990 (2013)
|.|++.|.+.. ..++.++..||..++.. +.-..+++.+...|.+. ++.++
T Consensus 533 ~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~ 610 (780)
T 2z6g_A 533 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IENIQ 610 (780)
T ss_dssp HHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CHHHH
Confidence 88888776533 34667777777765421 11133577788888876 57888
Q ss_pred HHHHHHHHHHhccCCCC-CCh--hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000159 991 KDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 991 ~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
..++..|...... ... ..+ ...+.+|...+.|.+.+||..|..+|..+...-+
T Consensus 611 ~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 611 RVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 8888777655421 100 011 1245668889999999999999999998877655
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.86 E-value=0.0001 Score=103.09 Aligned_cols=332 Identities=10% Similarity=0.072 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcc--C--cc------hHHHHHHHHHhcCCCCccc---HHHHHHHHHHHHHHHHHHcCCCch
Q 000159 613 AVWKERLEAISSLRQQVEAVQ--N--LD------QSVEILVRLVCMLPGWSEK---NVQVQQQVIEVINYLAATATKFPK 679 (2013)
Q Consensus 613 ~~Wk~Rl~ale~L~~~v~~~~--~--~~------~~~~~lv~~L~~~pgl~Ds---N~qV~~~~Le~l~~l~~~~~~~~~ 679 (2013)
.+|+.|.+|+..+..+..... . .. ...+.+...+ .|.+.|. +..|+..++.++..+.+. +.+
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v--~p~l~~~~~~~p~vr~~a~~~lg~~~~~---~~~ 491 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI--APDLTSNNIPHIILRVDAIKYIYTFRNQ---LTK 491 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT--HHHHHCSSCSCHHHHHHHHHHHHHTGGG---SCH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh--HHHhcCCCCCCceehHHHHHHHHHHHhh---CCH
Confidence 479999999999998864321 0 11 1112222221 1334555 889999999999887764 345
Q ss_pred hhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhC-----------------hhHHHHHHHHHhhhCC---Chh--HH
Q 000159 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG-----------------PGFIFERLYKIMKDHK---NPK--VL 735 (2013)
Q Consensus 680 ~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~-----------------~~~Vl~~L~~~l~~~K---npK--v~ 735 (2013)
..+..+++.++..+.|. .++..|..+|..+++... .+.+++.++..+ ... .++ ..
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll-~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI-LKHGSSPEKLAEN 570 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH-HTTCCCHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH-HhccCCCCccccc
Confidence 57888999999988884 579999999999988421 123444444443 221 122 34
Q ss_pred HHHHHHHHHHHHHhCCCCCC-hhhH----HHHHHhcCCC-CCcHhHHHHHHHHHHHHHHhhChh-HHhhhhhccHHHHHH
Q 000159 736 SEGILWMVSAVEDFGVSHLK-LKDL----IDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSA 808 (2013)
Q Consensus 736 ~~~l~~L~~li~~fG~~~l~-~k~l----i~~l~~~gL~-~~n~~VR~aA~~ll~~Ly~~~G~~-l~~~L~~lkp~ll~~ 808 (2013)
..++..|..++..++....+ ...+ +..+... .. ..++..+....++++.+.+..|+. +..+.+.+-|.+...
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~-~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~i 649 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM-AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 56677777777777643222 1223 3333333 33 347888988999999999887764 344545555655554
Q ss_pred HHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHH--HhcCCCChHHHHHHHHHHHHHHHhccc
Q 000159 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--KSLESPDWKVRLESIEAVNKILEEANK 886 (2013)
Q Consensus 809 Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll--~~l~d~~Wk~R~eale~l~~il~~a~~ 886 (2013)
++..........-..-..-+... +.+++ ....+-+-++ ..+....|- -..+..|...+.....
T Consensus 650 L~~~~~~~~~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~~~~~~~~ 714 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPNVWELKGNI--PAVTRLLKSFIKTDSS 714 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGGGGCCTTTH--HHHHHHHHHHHHHHGG
T ss_pred HHhhhHhhHHHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHHHhcCCCCc--hhHHHHHHHHHHhChH
Confidence 43211000000000000000000 00110 0111112222 222222221 1344445555543222
Q ss_pred cCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChh-hHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHHHH
Q 000159 887 RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWL 964 (2013)
Q Consensus 887 ~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~-~~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~ 964 (2013)
.+.. ...++..+...+.+.+. ...++.+++.++..+|.. |.+|+..+++.++..+...+ ..++.+....+..++
T Consensus 715 ~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 715 IFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp GCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 2222 24456666666655432 378999999999999999 99999999999999997764 445555555555554
Q ss_pred HhcCch
Q 000159 965 AAVHLD 970 (2013)
Q Consensus 965 ~~~gl~ 970 (2013)
-..+.+
T Consensus 791 ~~~~~~ 796 (960)
T 1wa5_C 791 NKLGSD 796 (960)
T ss_dssp HHHCHH
T ss_pred HHcCHH
Confidence 444433
No 38
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.86 E-value=2.4e-06 Score=116.35 Aligned_cols=518 Identities=13% Similarity=0.069 Sum_probs=298.8
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh-hhHhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFL 367 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~l 367 (2013)
.+.+.|.+.+...|..++..++.+-. ..+ -...++.|.+.+.+.+..|+..|+.+|..|+..-.....- ....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~-~~i----~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDD-AEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhH-HHH----HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 57777888888888888887765421 111 1456777777888889999999999999998743221111 12468
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000159 368 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2013)
Q Consensus 368 lp~LL~klkdk-k~~V~~aa~~aL~ai~~~~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2013)
++.|+..+++. ...++..+..+|..+.... ...-..+++.|+..+++.++.+|..++..|..+........ ...
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHH
Confidence 99999999754 7889999999998865320 00012467888899999999999999999999876543211 111
Q ss_pred -hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCC
Q 000159 443 -HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (2013)
Q Consensus 443 -l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (2013)
-...+|.+++++.+.+..||..+..++..+.. +.......+-.-+. ...+...+...
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~------------------ 330 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY------------------ 330 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC------------------
Confidence 14688999999999999999999999986652 32211111100000 00111111000
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhcc
Q 000159 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (2013)
Q Consensus 522 s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~ 601 (2013)
+.+.....+
T Consensus 331 --------------------------------------------------------------------~~~~~~~~a--- 339 (780)
T 2z6g_A 331 --------------------------------------------------------------------TYEKLLWTT--- 339 (780)
T ss_dssp --------------------------------------------------------------------CCHHHHHHH---
T ss_pred --------------------------------------------------------------------CHHHHHHHH---
Confidence 001111000
Q ss_pred CcHHHHhhhcC-CCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh
Q 000159 602 IPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (2013)
Q Consensus 602 l~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (2013)
..++..|.. ...+.. ++.. ...+.|+.+ +.+.+..+...++.+|..++.......
T Consensus 340 --~~aL~~Ls~~~~~~~~---------i~~~-----g~l~~Ll~l------L~~~~~~~~~~a~~~L~~L~~~~~~~~-- 395 (780)
T 2z6g_A 340 --SRVLKVLSVCSSNKPA---------IVEA-----GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE-- 395 (780)
T ss_dssp --HHHHHHHHTSTTHHHH---------HHHT-----THHHHHGGG------TTCSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred --HHHHHHhhcChHHHHH---------HHHh-----chHHHHHHH------HcCCchHHHHHHHHHHHHHhccchhhh--
Confidence 011111111 111110 0000 012233333 344556677888888888876543321
Q ss_pred hHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHhhhCCC-hhHHHHHHHHHHHHHHHhC
Q 000159 681 CVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKN-PKVLSEGILWMVSAVEDFG 750 (2013)
Q Consensus 681 ~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~-------~~Vl~~L~~~l~~~Kn-pKv~~~~l~~L~~li~~fG 750 (2013)
....+++.|+..+.+ ..++..|..+|..++..... .-.++.|+..+....+ ..++..++..|..+....+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 234577888876654 56888888888887653210 1246666666644333 4899999888887643211
Q ss_pred CC-----CCChhhHHHHHHhcCCCCCc-HhHHHHHHHHHHHHHHhhChhHHhhh--hhccHHHHHHHHHHHhhCCCCCCC
Q 000159 751 VS-----HLKLKDLIDFCKDTGLQSSA-AATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTV 822 (2013)
Q Consensus 751 ~~-----~l~~k~li~~l~~~gL~~~n-~~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p 822 (2013)
.. .+-....++.+..+ |.+.+ +.||.+|..+|+.|.. ++.....+ .++-|.+.+.+......++.+..-
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 10 00001245666666 77776 4999999999998864 44333333 345667777776533222110000
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhc-c-ccCCCCChhhHHHHH
Q 000159 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-N-KRIQPAGTGELFGGL 900 (2013)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a-~-~~I~~~~~~eL~~~L 900 (2013)
+ .+... +. . ......++..++..|..+.... + ..+. -...++.|
T Consensus 553 a----------------l~nq~---------~~----~--~~~~~~v~~~a~~aL~~La~~~~~~~~l~---~~~~i~~L 598 (780)
T 2z6g_A 553 G----------------GTQQQ---------FV----E--GVRMEEIVEACTGALHILARDIHNRIVIR---GLNTIPLF 598 (780)
T ss_dssp ---------------------C---------CS----T--TCCHHHHHHHHHHHHHHHTTSHHHHHHHH---HTCCHHHH
T ss_pred c----------------cccch---------hh----c--ccChHHHHHHHHHHHHHHhcChhhHHHHH---HCCcHHHH
Confidence 0 00000 00 0 0011234556666666554210 0 0011 03457888
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000159 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 901 ~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
...|.+.+..|+..|+.++..++. .+.....+.. .++.|+..+.+.+..||..|..+|..+...-+
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 899999999999999999998862 2334433333 67889999999999999999999999887654
No 39
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.77 E-value=6e-05 Score=105.39 Aligned_cols=538 Identities=13% Similarity=0.110 Sum_probs=296.7
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhh------cchhhh-H
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT------HFSGSS-R 365 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~------~f~~~~-~ 365 (2013)
.+.+-..| |-+.|..+-+.| +| ...|...+. +.+..++..|+..+....+.--. .+.+.. .
T Consensus 15 ~spd~~~r--Ae~~L~~~~~~p-----~~---~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~ 84 (960)
T 1wa5_C 15 VIASTAKT--SERNLRQLETQD-----GF---GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE 84 (960)
T ss_dssp TSGGGHHH--HHHHHHHHHTST-----TH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred cCCCHHHH--HHHHHHHhhcCC-----CH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHH
Confidence 34455566 777777764433 23 334445553 34678899999999887764211 222221 2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh--------
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-------- 436 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-------- 436 (2013)
.+=..++..+......||..+..++..++.+ .....+++++.|...+++.++..+.+++..|..+++.+..
T Consensus 85 ~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~ 164 (960)
T 1wa5_C 85 LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELF 164 (960)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHH
Confidence 2223444444445588999999999999987 2234678999999999888888999999999998886542
Q ss_pred hHHHHhhhhHHH----HH---HHHhcCCCH---HHHHHHHHHHHHHHHHhCc----hhHHHHHhhccHHHHHHHHHHHhc
Q 000159 437 AAVLKVHKDYVP----IC---MECLNDGTP---EVRDAAFSVLAAIAKSVGM----RPLERSIEKLDDVRRNKLSEMIAG 502 (2013)
Q Consensus 437 ~~l~~~l~~l~p----~l---~k~l~Ds~~---~VR~aA~~al~~l~~~~Ge----~~~~~~l~~Ld~~~~kki~e~~~~ 502 (2013)
..+...+..+.+ .+ ..++.+... .+| .+.+++-.+.++++. ..-..+.+.++.- ...+...+..
T Consensus 165 ~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~ 242 (960)
T 1wa5_C 165 LEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVG-MGIFHKYLSY 242 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHH-HHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHH-HHHHHHHHcC
Confidence 111112222233 22 333665533 255 233333333333321 0000011111110 1111122211
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCC
Q 000159 503 SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPE 582 (2013)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~ 582 (2013)
. .|.. ..++ +
T Consensus 243 ~------------------------------------------~p~~---------------------------~~d~-d 252 (960)
T 1wa5_C 243 S------------------------------------------NPLL---------------------------EDPD-E 252 (960)
T ss_dssp C------------------------------------------SCCC---------------------------C-----
T ss_pred C------------------------------------------CCcc---------------------------cCCc-c
Confidence 0 0000 0000 0
Q ss_pred CCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccC-cchH----HHHHHHHHhcCCCCcccHH
Q 000159 583 DVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQS----VEILVRLVCMLPGWSEKNV 657 (2013)
Q Consensus 583 ~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~-~~~~----~~~lv~~L~~~pgl~DsN~ 657 (2013)
+.+.+ ..|+.|..+++.|..+++...+ ..+. .+.++..+... +-....-
T Consensus 253 ---~~~~~----------------------~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~~ 306 (960)
T 1wa5_C 253 ---TEHAS----------------------VLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSI-SNQPKYD 306 (960)
T ss_dssp -----CCC----------------------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC-CSCTTSH
T ss_pred ---ccccc----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCcH
Confidence 00001 1245555555555555443211 1111 22333333211 1012234
Q ss_pred HHHHHHHHHHHHHHHHc--CC-C-chhhHHHHH-HHHHhhh------------------------cC-hhhhHHHHHHHH
Q 000159 658 QVQQQVIEVINYLAATA--TK-F-PKKCVVLCL-LGISERV------------------------AD-IKTRAHAMKCLT 707 (2013)
Q Consensus 658 qV~~~~Le~l~~l~~~~--~~-~-~~~~~~~il-~~LveKl------------------------gD-~K~r~~a~e~L~ 707 (2013)
.+...++++|..+++.- .. + ....+..++ +.++..+ .| ...|..|.++|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 57778888888776421 11 1 113333333 2222221 01 135788999999
Q ss_pred HHHhhhChhHHHHHHHHHh---hh------CCChhHHHHHHHHHHHHHHHh-----CCC----CCChhhH-HHHHHhcCC
Q 000159 708 TFSEAVGPGFIFERLYKIM---KD------HKNPKVLSEGILWMVSAVEDF-----GVS----HLKLKDL-IDFCKDTGL 768 (2013)
Q Consensus 708 ~l~e~~~~~~Vl~~L~~~l---~~------~KnpKv~~~~l~~L~~li~~f-----G~~----~l~~k~l-i~~l~~~gL 768 (2013)
.++...+ +.+++.++..+ .. +.+|+.+.+++..+..+.+.. |.. .+++..+ ...+... +
T Consensus 387 ~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~-l 464 (960)
T 1wa5_C 387 ELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD-L 464 (960)
T ss_dssp HHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH-H
T ss_pred HHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH-h
Confidence 9999887 55655555433 22 678999999999998886431 111 1144443 3344444 6
Q ss_pred CCC---cHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 769 QSS---AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 769 ~~~---n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
.+. ++-||..|..+++.+..++.+. ++..
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~~~---~l~~--------------------------------------------- 496 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLTKA---QLIE--------------------------------------------- 496 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHH---HHHH---------------------------------------------
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCCHH---HHHH---------------------------------------------
Confidence 666 8999999999998776543211 1111
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhc-----------cccCCCCChhhHHHHHHhcccch-----hH
Q 000159 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-----------NKRIQPAGTGELFGGLRGRLYDS-----NK 909 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a-----------~~~I~~~~~~eL~~~L~~rL~Ds-----N~ 909 (2013)
+.+.++..+.|.+-.+|..|...+..+++.. ...+.|. +.+|+..|...+... ..
T Consensus 497 --------~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~-l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 497 --------LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS-TEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp --------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT-HHHHHHHHHHHHHTTCCCHHHH
T ss_pred --------HHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhh-HHHHHHHHHHHHHhccCCCCcc
Confidence 2234555666777788999999999888631 1235555 477888887777542 11
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHH
Q 000159 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-----NKKHMRECTLTVLDAWLAAVHL-------DKMVPYVT 977 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D-----~k~~Vr~aa~~aL~~i~~~~gl-------~~ll~~l~ 977 (2013)
.....++.+++.++..++..+.+|+..+++.++..+.. .++..+..+.+||..++...+. +.++|.+.
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 13357788999999999999999999999988877642 4567888899999999988552 34556666
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHh
Q 000159 978 TALTDAKLGAEGRKDLFDWLSKQL 1001 (2013)
Q Consensus 978 ~~L~~~k~~p~~R~~~l~~L~~~l 1001 (2013)
..|.+. ......+++..+...+
T Consensus 648 ~iL~~~--~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 648 TVFSED--IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHTT--CTTTHHHHHHHHHHHH
T ss_pred HHHHhh--hHhhHHHHHHHHHHHH
Confidence 666543 1334555555544333
No 40
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.75 E-value=4.2e-07 Score=122.98 Aligned_cols=295 Identities=12% Similarity=0.175 Sum_probs=214.4
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHHHhh----hhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhH
Q 000159 94 VCDAIAAKCLTG-RPKTVEKAQAVFMLWVEL----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR 168 (2013)
Q Consensus 94 v~~~LveK~l~~-k~~~k~~A~~~ll~~~E~----~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~ 168 (2013)
++..++.+...+ ....++.|..+.-.+..- ..+..+++.|.+++.+|+.- ++++..+..+.+.||... +..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~-~~e~ 91 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP-SVEP 91 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT-TTHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC-Cccc
Confidence 344455553223 344445554444433311 11347889999998877544 999999999998898743 3355
Q ss_pred ----HHHhhhhhhcCCChHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHh
Q 000159 169 ----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKE 244 (2013)
Q Consensus 169 ----il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~ 244 (2013)
+++.+...++|.++.||++|...+..++..+.+.+++..|
T Consensus 92 ~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~------------------------------------ 135 (986)
T 2iw3_A 92 YIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALL------------------------------------ 135 (986)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHH------------------------------------
T ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHH------------------------------------
Confidence 4577788889999999999999988888888764331111
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh-ccCCHHHHHHHHHHHHHHhc-CCCCCCCC
Q 000159 245 LGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV-KATKWSERKDAVAELTKLAS-TKRIAPGD 322 (2013)
Q Consensus 245 ~~~ea~~~~~g~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l-~s~kWkeR~eaL~~L~~l~~-~pki~~~~ 322 (2013)
+.+++.+ .+.||+.+..||..|..++. .|......
T Consensus 136 -------------------------------------------~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 136 -------------------------------------------PHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp -------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred -------------------------------------------HHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 1233333 34589999999999999984 45444455
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---C-
Q 000159 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---C- 398 (2013)
Q Consensus 323 ~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~---~- 398 (2013)
+.++++.+..++-|....|...|..++..++..+++ .-+..++|.|++.+.+... .-+|++.+.... .
T Consensus 173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n---~d~~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN---KDIERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC---TTTGGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCC
T ss_pred ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC---cchhhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeee
Confidence 789999999999999999999999999999988875 3455677888888887744 446666665540 1
Q ss_pred --CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Q 000159 399 --LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECL-NDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 399 --~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l-~Ds~~~VR~aA~~al~~l~~ 474 (2013)
.++.-+.|.|..+|..+...+|+.++-.+.++..-. ++....++++.++|.+.+.. +-++||||+.|.+|+.++.+
T Consensus 245 ~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 245 TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 125567899999999999999999998888866544 34556678899999999976 57899999999999999887
Q ss_pred HhCc
Q 000159 475 SVGM 478 (2013)
Q Consensus 475 ~~Ge 478 (2013)
..+.
T Consensus 325 ~~~~ 328 (986)
T 2iw3_A 325 VGNV 328 (986)
T ss_dssp HHTC
T ss_pred hhcc
Confidence 7654
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.70 E-value=9e-05 Score=98.89 Aligned_cols=469 Identities=12% Similarity=0.046 Sum_probs=276.6
Q ss_pred hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcCh
Q 000159 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSK 436 (2013)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~-----~~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~ 436 (2013)
+....+|.|+..+++..+.|+..+..+|..+..... .....+++.|...|.+. ++.+|..++..|..+.. ...
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~ 89 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HRE 89 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-Chh
Confidence 345578999999999999999999999999886510 01235678888888864 89999999998885432 221
Q ss_pred hHHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000159 437 AAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (2013)
Q Consensus 437 ~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~ 515 (2013)
..... -...+|.++.++.+.++.||..|..+|..+.....+. . ..+.+ .+
T Consensus 90 -~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~------------~~v~~---~g------------ 140 (644)
T 2z6h_A 90 -GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-K------------MAVRL---AG------------ 140 (644)
T ss_dssp -HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-H------------HHHHH---TT------------
T ss_pred -hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-H------------HHHHH---CC------------
Confidence 11111 1358899999999999999999999999887654321 1 11110 00
Q ss_pred ccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHH
Q 000159 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (2013)
Q Consensus 516 ~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e 595 (2013)
T Consensus 141 -------------------------------------------------------------------------------- 140 (644)
T 2z6h_A 141 -------------------------------------------------------------------------------- 140 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHH
Q 000159 596 SRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669 (2013)
Q Consensus 596 ~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~ 669 (2013)
.-+.++..|.+.+|+.+..++..|..+..+.++. ....+.|+++|.. .....+...++.++..
T Consensus 141 ------~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~-----~~~~~~~~~a~~~L~n 209 (644)
T 2z6h_A 141 ------GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-----YTYEKLLWTTSRVLKV 209 (644)
T ss_dssp ------HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred ------ChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc-----CChHHHHHHHHHHHHH
Confidence 0023445555666666666655555444211000 0113344444421 0112222333333322
Q ss_pred HHHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHh
Q 000159 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 749 (2013)
Q Consensus 670 l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~f 749 (2013)
+.. +...+.. +.+. -+++.+++.+ .+.++.++..++..|..+....
T Consensus 210 Ls~----------------------~~~~~~~-------l~~~----g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 210 LSV----------------------CSSNKPA-------IVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HTT----------------------CTTHHHH-------HHHT----THHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGC
T ss_pred Hhc----------------------CcccHHH-------HHHC----CCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcc
Confidence 211 1111111 1111 1344555544 4557888888888888876543
Q ss_pred CCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCccccc
Q 000159 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (2013)
Q Consensus 750 G~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r 829 (2013)
. .......+++.+..+ +.+.++.||..|..+|..|... ++.....+ . +. +
T Consensus 256 ~-~~~~~~~~i~~Lv~l-L~~~d~~v~~~a~~aL~~L~~~-~~~~~~~v-----------~----~~-g----------- 305 (644)
T 2z6h_A 256 T-KQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------C----QV-G----------- 305 (644)
T ss_dssp T-TCCSCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTT-CHHHHHHH-----------H----HT-T-----------
T ss_pred h-hhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHcC-CHHHHHHH-----------H----Hc-C-----------
Confidence 2 223346788888888 9999999999999999887542 11111111 0 00 0
Q ss_pred CccccCCCCCCCCCCCCCcccccccchHHHHhcCC--CChHHHHHHHHHHHHHHHhccc--cCCCCC-hhhHHHHHHhcc
Q 000159 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES--PDWKVRLESIEAVNKILEEANK--RIQPAG-TGELFGGLRGRL 904 (2013)
Q Consensus 830 ~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d--~~Wk~R~eale~l~~il~~a~~--~I~~~~-~~eL~~~L~~rL 904 (2013)
..+.|+..+.+ ..+.+|..|+..|..+...... ..+... -...++.|...|
T Consensus 306 ------------------------~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL 361 (644)
T 2z6h_A 306 ------------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361 (644)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTT
T ss_pred ------------------------CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHh
Confidence 11234444433 2378888888888887531000 000000 124577888888
Q ss_pred cchh-HHHHHHHHHHHHHHHHHhChhhHh-h-hhhHHHHHHHHhCCC----------------------cHHHHHHHHHH
Q 000159 905 YDSN-KNLVMATLITLGAVASAMGPAVEK-S-SKGVLSDILKCLGDN----------------------KKHMRECTLTV 959 (2013)
Q Consensus 905 ~DsN-~~V~~~Al~~l~~La~alg~~~~~-~-~~~llp~ll~~L~D~----------------------k~~Vr~aa~~a 959 (2013)
.+.+ ..++..|+.+++.|+.. ....+ . -..++|.++..|.+. ...|+.++..+
T Consensus 362 ~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~a 439 (644)
T 2z6h_A 362 HPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439 (644)
T ss_dssp STTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHH
Confidence 7764 68999999999988743 22211 1 234778888777653 34567777777
Q ss_pred HHHHHHhc------CchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC-Ch--hhhHHHHHhhcCCCChHHHH
Q 000159 960 LDAWLAAV------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA--AHLLKPASIAMTDKSSDVRK 1030 (2013)
Q Consensus 960 L~~i~~~~------gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~-~~--~~ll~pl~~~L~D~~~dVR~ 1030 (2013)
|..++... .-...++.+...|.+. ++.++..++..|...... .... .+ ...+.++..++.|.+++||.
T Consensus 440 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~ 516 (644)
T 2z6h_A 440 LHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVAT 516 (644)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHhcCHHHHHHHHhCCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHH
Confidence 77554321 1124567788888765 577888877776654421 1000 01 12355688889999999999
Q ss_pred HHHHHHHHHHHHcCh
Q 000159 1031 AAEACIVEILRAGGQ 1045 (2013)
Q Consensus 1031 aA~~~L~~l~~~~G~ 1045 (2013)
+|..+|..+...-+.
T Consensus 517 ~A~~aL~~l~~~~~~ 531 (644)
T 2z6h_A 517 YAAAVLFRMSEDKPQ 531 (644)
T ss_dssp HHHHHHHHHTTTSCH
T ss_pred HHHHHHHHHhccCcH
Confidence 999999887665543
No 42
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.69 E-value=6.7e-05 Score=100.52 Aligned_cols=623 Identities=12% Similarity=0.070 Sum_probs=345.2
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHHHhC---CCC-------------cChhHHHHhhhhhhcCC--ChHHHHHHHHHHH
Q 000159 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFG---AKI-------------IPPKRILKMLPELFDHQ--DQNVRASSKGLTL 193 (2013)
Q Consensus 132 ~L~~~~~~KnpKv~~~~l~~L~~~l~~fG---~~~-------------i~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ 193 (2013)
.+...+..+++++..++..++..+++.+- .+. ..++.++..|...+.+. ....|+.+++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~ 175 (810)
T 3now_A 96 WFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELIT 175 (810)
T ss_dssp HHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHH
Confidence 44566778999999888888777766553 222 13566888888888877 6889999999976
Q ss_pred HHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcC-----CCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCC
Q 000159 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVS-----GTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPP 268 (2013)
Q Consensus 194 ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~-----~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~~~~ 268 (2013)
.-..+-.-......... + - ++.|-+-...++ +..+.+--+|.+..--... --+. .
T Consensus 176 ~~~~~~~~~~~~~~~~~--~-g-~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~--~~~~--------------~ 235 (810)
T 3now_A 176 RNVHYTALEWAERLVEI--R-G-LCRLLDVCSELEDYKYESAMDITGSSSTIASVCLAR--IYEN--------------M 235 (810)
T ss_dssp HHTTCTTTTHHHHHHHT--T-H-HHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHH--HHHT--------------C
T ss_pred HhCCccccccccchhhH--h-h-HHHHHHHHhcCccccccccCCCChhHHHHHHHHHHH--HHHH--------------h
Confidence 54422211011111111 0 0 111111111111 1111122223332100000 0000 0
Q ss_pred CCCCCCCCCcccccccCcchhhh-hhhccCCHHHHHHHHHHHHHHhcCCC-CCCCCh--HHHHHHHHHHhcccCHHHHHH
Q 000159 269 EIDEYELVDPVDILTPLEKSGFW-EGVKATKWSERKDAVAELTKLASTKR-IAPGDF--TEVCRTLKKLITDVNIAVAVE 344 (2013)
Q Consensus 269 ~iD~~dl~~~vdIl~kl~~~~f~-~~l~s~kWkeR~eaL~~L~~l~~~pk-i~~~~~--~~l~~~L~k~l~D~N~~V~~~ 344 (2013)
..| ..-+.+.++. ++|. .++....-..+..|...+..+..++- .-..-+ ...+..|...+...+..+...
T Consensus 236 ~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~ 309 (810)
T 3now_A 236 YYD-----EAKARFTDQI-DEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRV 309 (810)
T ss_dssp CSH-----HHHHHHHHHH-HHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHH
T ss_pred ccc-----hhHHHHHHHH-HHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHH
Confidence 000 0112333333 2333 35566777788888888888775431 111001 135667777778778888899
Q ss_pred HHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----C------CChHhHHHHHHHHhh
Q 000159 345 AIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----C------LNLVDVVEDVKTSVK 413 (2013)
Q Consensus 345 A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~----~------~~l~~il~~l~~~l~ 413 (2013)
|+.+++.++.. +.+..+ ...-+|.|...++.+...++.-+..+|..+...+ . .++..+++.+...|.
T Consensus 310 A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~ 387 (810)
T 3now_A 310 ACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLI 387 (810)
T ss_dssp HHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhc
Confidence 99999997765 222222 2233488888889888889987777777775321 0 113566777778887
Q ss_pred cC--ChHHHHHHHHHHHHHHHhcChhHHHHhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhcc
Q 000159 414 NK--VPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (2013)
Q Consensus 414 ~K--np~vR~~~l~~L~~~l~~~~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld 489 (2013)
+. ++.+|..++..|..+-... ..-.... ..++|.|+.++...++.+...|..+|+.+.. |.+. + ..+.
T Consensus 388 ~~~~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~--~~d~-q---~~~~ 459 (810)
T 3now_A 388 KPGKDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN--AYEK-Q---EMLP 459 (810)
T ss_dssp CSSCCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--CSCC-C---CCCC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC--Cchh-h---hhhH
Confidence 76 7899999998888753321 1111122 4688999999998899998888888776654 3211 0 0000
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 490 DVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGS 569 (2013)
Q Consensus 490 ~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~ 569 (2013)
.+.++ .+. ++. ..
T Consensus 460 -----~l~~l-----------------------------------a~~-----s~~-~v--------------------- 472 (810)
T 3now_A 460 -----EMIEL-----------------------------------AKF-----AKQ-HI--------------------- 472 (810)
T ss_dssp -----SCGGG-----------------------------------TTT-----TCC-SC---------------------
T ss_pred -----HHHHH-----------------------------------HHH-----hhc-cC---------------------
Confidence 00000 000 000 00
Q ss_pred CCCcCCcCCCCCCCCCCCCCCH-HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhc
Q 000159 570 GKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM 648 (2013)
Q Consensus 570 ~~~~~s~~~~~~~~~~~~~~S~-ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~ 648 (2013)
.+ ...... +... .|...+ ++. ...+.|+..+.
T Consensus 473 --------~~------~~~ld~~~~v~---------------------~r~~~V------vea-----GaVp~LV~LL~- 505 (810)
T 3now_A 473 --------PE------EHELDDVDFIN---------------------KRITVL------ANE-----GITTALCALAK- 505 (810)
T ss_dssp --------CC------SSCHHHHHHHH---------------------HHHHHH------HHT-----THHHHHHHHHT-
T ss_pred --------cc------ccccccHHHHH---------------------HHHHHH------HHC-----cCHHHHHHHHc-
Confidence 00 000001 1111 111111 111 12344444442
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhc--ChhhhHHHHHHHHHHHhhhChhHH------
Q 000159 649 LPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFI------ 718 (2013)
Q Consensus 649 ~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--D~K~r~~a~e~L~~l~e~~~~~~V------ 718 (2013)
..+..|++.+..+|..++.. .. .+..+ .-++|.|+.-+. +.+.+..|..+|..++....++.+
T Consensus 506 -----s~s~~vqe~Aa~aL~NLA~d-~~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 506 -----TESHNSQELIARVLNAVCGL-KE-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTS-HH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred -----CCCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 12345556666666655531 11 11111 114555555443 456788888888888765555433
Q ss_pred ---HHHHHHHhhhCCChhHHHHHHHHHHHHHHHh---CCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhCh
Q 000159 719 ---FERLYKIMKDHKNPKVLSEGILWMVSAVEDF---GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (2013)
Q Consensus 719 ---l~~L~~~l~~~KnpKv~~~~l~~L~~li~~f---G~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~ 792 (2013)
++.|+..+....+...+.+++..|.++...- ....+. ...++.+..+ +.+.++.||.+|..+++.|.. ++
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~L-L~s~~~~Vq~~A~~~L~NLa~--~~ 654 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYY-LMEDHLYLTRAAAQCLCNLVM--SE 654 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHH-HHSCCTTHHHHHHHHHHHHTT--SH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhC--Ch
Confidence 3444444322224455668888888776310 000000 1245556666 788899999999999998853 33
Q ss_pred hHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHH
Q 000159 793 DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLE 872 (2013)
Q Consensus 793 ~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~e 872 (2013)
+.... |.. +. + ..+-|+..+...+-.+|.+
T Consensus 655 ~~~~~---------------~v~--~~--------------------------------g-~l~~Lv~LL~s~d~~vq~~ 684 (810)
T 3now_A 655 DVIKM---------------FEG--NN--------------------------------D-RVKFLALLCEDEDEETATA 684 (810)
T ss_dssp HHHHH---------------HHS--SS--------------------------------S-HHHHHHHGGGCSSHHHHHH
T ss_pred HHHHH---------------HHh--cc--------------------------------C-cHHHHHHHhcCCCHHHHHH
Confidence 32111 110 00 0 1245777788888999999
Q ss_pred HHHHHHHHHHhccccCCCCCh-hhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHHHHHHHHhCCC-
Q 000159 873 SIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDN- 948 (2013)
Q Consensus 873 ale~l~~il~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp~ll~~L~D~- 948 (2013)
|.-.|..+.......++.-.- ...++.|...|.+.+..++..|+.++..++.+ +.....++ ...++.+...+.++
T Consensus 685 Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d 763 (810)
T 3now_A 685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPD 763 (810)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcc
Confidence 999999888631111111000 34678888888999999999999999999873 33333332 23788888888765
Q ss_pred --cHHHHHHHHHHHHHHHHh
Q 000159 949 --KKHMRECTLTVLDAWLAA 966 (2013)
Q Consensus 949 --k~~Vr~aa~~aL~~i~~~ 966 (2013)
+..+++.|..+|..+.+.
T Consensus 764 ~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 764 DTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp STTHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhC
Confidence 678999999999988765
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.65 E-value=1.5e-05 Score=106.34 Aligned_cols=487 Identities=13% Similarity=0.060 Sum_probs=284.3
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--CC
Q 000159 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--LN 400 (2013)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~ai~~~~--~--~~ 400 (2013)
+..|.+.+.+.+..++..|+.+|+.|+..-.....-. ...+++.|+..+.+. ...++..+..+|..+.... . ..
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 4555566778899999999999999997543221111 236789999999865 7888888888888765320 0 00
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 401 l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
-..+++.|...+++.++.++..++..|..+........ ... -...+|.++++|.+.++.++.++..+|..+.. +..
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~ 172 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQ 172 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--cCc
Confidence 02467888889999999999999999999876543221 111 25689999999999999999999999987764 222
Q ss_pred hHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000159 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2013)
Q Consensus 480 ~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2013)
.....+-.... ...+.+.+...
T Consensus 173 ~~~~~i~~~g~--v~~Lv~lL~~~-------------------------------------------------------- 194 (644)
T 2z6h_A 173 ESKLIILASGG--PQALVNIMRTY-------------------------------------------------------- 194 (644)
T ss_dssp HHHHHHHHTTH--HHHHHHHHTTC--------------------------------------------------------
T ss_pred HHHHHHHHcCC--hHHHHHHHHcC--------------------------------------------------------
Confidence 11111110000 00111111100
Q ss_pred CCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHH
Q 000159 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 639 (2013)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~ 639 (2013)
+.+++...+ ..++..|... -..|.. +++. ...
T Consensus 195 ------------------------------~~~~~~~~a-----~~~L~nLs~~-~~~~~~-------l~~~-----g~l 226 (644)
T 2z6h_A 195 ------------------------------TYEKLLWTT-----SRVLKVLSVC-SSNKPA-------IVEA-----GGM 226 (644)
T ss_dssp ------------------------------CCHHHHHHH-----HHHHHHHTTC-TTHHHH-------HHHT-----THH
T ss_pred ------------------------------ChHHHHHHH-----HHHHHHHhcC-cccHHH-------HHHC-----CCH
Confidence 001110000 0111112110 011100 0000 012
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhCh--
Q 000159 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-- 715 (2013)
Q Consensus 640 ~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~-- 715 (2013)
+.++.+ +.+.+..+...++.+|..+....+... ....+++.|+.-+.+ ..++..+..+|..++.....
T Consensus 227 ~~L~~l------l~~~~~~~~~~a~~~L~nL~~~~~~~~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~ 298 (644)
T 2z6h_A 227 QALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298 (644)
T ss_dssp HHHHTT------TTCSCHHHHHHHHHHHHHHGGGCTTCC--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHH------HhcCCHHHHHHHHHHHHHHhhcchhhh--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 333333 344567788888888888775433321 234567777776654 57888888888888753211
Q ss_pred -----hHHHHHHHHHhhhCC-ChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCc-HhHHHHHHHHH
Q 000159 716 -----GFIFERLYKIMKDHK-NPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSA-AATRNATIKLL 783 (2013)
Q Consensus 716 -----~~Vl~~L~~~l~~~K-npKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~~n-~~VR~aA~~ll 783 (2013)
.-+++.|+..+.... .+.++..++..|..+....+... +--...++.+..+ |.+.+ +.||.+|..++
T Consensus 299 ~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L 377 (644)
T 2z6h_A 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLI 377 (644)
T ss_dssp HHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT-TSTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH-hCccCchHHHHHHHHHH
Confidence 114666666654333 48999999999988853222100 0001356667777 88775 79999999999
Q ss_pred HHHHHhhChhHHhhh--hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHh
Q 000159 784 GALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 861 (2013)
Q Consensus 784 ~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~ 861 (2013)
..|.. ++.....+ .+.-|.+.+.+......++.+..-+ . ..+ ++..
T Consensus 378 ~nLa~--~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~a----------l------~n~-----~~~~--------- 425 (644)
T 2z6h_A 378 RNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----------G------TQQ-----QFVE--------- 425 (644)
T ss_dssp HHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-------------------------------CC---------
T ss_pred HHHcc--CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhc----------c------ccc-----hhcc---------
Confidence 88864 33322222 4566777777766544443211000 0 000 0000
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh--hHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVL 938 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~--~ll 938 (2013)
+..+..++..++..|..+.... ...... -...++.|...|.+.+..|+..|+.++..++.. ++....+. ..+
T Consensus 426 -~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l 500 (644)
T 2z6h_A 426 -GVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGAT 500 (644)
T ss_dssp -SSCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCH
T ss_pred -cccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCh
Confidence 0112345566666666554311 000000 134677888888999999999999998888732 33333222 246
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000159 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
+.+...+.+.++.||..|..+|..+....+
T Consensus 501 ~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 501 APLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 788999999999999999999988766553
No 44
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.65 E-value=6e-05 Score=100.98 Aligned_cols=606 Identities=15% Similarity=0.139 Sum_probs=359.7
Q ss_pred ccCCHHHHHHHHHHHHHHhcC----CCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHH
Q 000159 295 KATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLL 368 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~----pki~~~~~~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ll 368 (2013)
.+.+-..|..|+..|.-|+.. .+|...+ -+..|.+.+++ .|.-++..|++++..|+++=+...... -..=.
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~---~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~ 94 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGAELLYKDH---CIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGV 94 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred cccCHHHHHHHHhhceeeeccccchHHHHhCc---hHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCH
Confidence 345556677788887766631 2222211 24466666774 889999999999999998654332212 22235
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh--cC-----------------CChHhHHHHHHHHhhcCC--hHHHHHHHHHH
Q 000159 369 PVLLEKLKEKKPTVAESLTQTLQAMHKA--GC-----------------LNLVDVVEDVKTSVKNKV--PLVRSLTLNWV 427 (2013)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~ai~~~--~~-----------------~~l~~il~~l~~~l~~Kn--p~vR~~~l~~L 427 (2013)
|.+...+.-+...+..++..++..++.. +. ..++.++..++..+.+++ ...|-.+++.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 174 (810)
T 3now_A 95 PWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELI 174 (810)
T ss_dssp HHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHH
Confidence 6677777778888888998998888866 11 013344555666666655 79999999999
Q ss_pred HHHHHhcChh---HHH--HhhhhHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHhCchh-HHHHHhhccHHHH
Q 000159 428 TFCIETSSKA---AVL--KVHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRR 493 (2013)
Q Consensus 428 ~~~l~~~~~~---~l~--~~l~~l~p~l~k~l~Ds--------~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~ 493 (2013)
.+.+.+.... .+. ..++.++.+... +.+. .+++|..+.-|+..++.-.+.+. -+.|-.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~-~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~------- 246 (810)
T 3now_A 175 TRNVHYTALEWAERLVEIRGLCRLLDVCSE-LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTD------- 246 (810)
T ss_dssp HHHTTCTTTTHHHHHHHTTHHHHHHHHHTC-CSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHH-------
T ss_pred HHhCCccccccccchhhHhhHHHHHHHHhc-CccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHH-------
Confidence 9887554211 111 133444433222 2232 67899999999999998888421 122222
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccc-c-ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000159 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS-A-ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGK 571 (2013)
Q Consensus 494 kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~-~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~ 571 (2013)
.+.+++...-. .+. . . ..++.. + +..+++
T Consensus 247 -~~~~~~~~~~~-----~~~------------~---~-~~~~a~~alt~i~~g--------------------------- 277 (810)
T 3now_A 247 -QIDEYIKDKLL-----APD------------M---E-SKVRVTVAITALLNG--------------------------- 277 (810)
T ss_dssp -HHHHHHHHHHS-----SCC------------H---H-HHHHHHHHHHHHHSS---------------------------
T ss_pred -HHHHHHHHHhc-----cCC------------h---H-hHHHHHHHHHHHhcC---------------------------
Confidence 22233221000 000 0 0 000000 0 000000
Q ss_pred CcCCcCCCCCCCCCCCCCCHHHHHHHh-hccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc----hHHHHHHHHH
Q 000159 572 QETSKLTEAPEDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLV 646 (2013)
Q Consensus 572 ~~~s~~~~~~~~~~~~~~S~ee~e~~~-~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~----~~~~~lv~~L 646 (2013)
..+...... .+-+-+.++..+.|.+-..+..|++.+..........+ ...+.|+.+
T Consensus 278 ------------------~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~L- 338 (810)
T 3now_A 278 ------------------PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRL- 338 (810)
T ss_dssp ------------------SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHH-
T ss_pred ------------------CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHH-
Confidence 011111111 11122678899999999999999999987554311110 112333333
Q ss_pred hcCCCCcccHHHHHHHHHHHHHHHHHHc------CCCchhhHHHHHHHHHhhhcC----hhhhHHHHHHHHHHHhhhC--
Q 000159 647 CMLPGWSEKNVQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVAD----IKTRAHAMKCLTTFSEAVG-- 714 (2013)
Q Consensus 647 ~~~pgl~DsN~qV~~~~Le~l~~l~~~~------~~~~~~~~~~il~~LveKlgD----~K~r~~a~e~L~~l~e~~~-- 714 (2013)
++..+..+...++-.|..+.... ..|....+..+++.++.-+.+ ...+..|.++|..++....
T Consensus 339 -----l~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk 413 (810)
T 3now_A 339 -----YHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK 413 (810)
T ss_dssp -----TTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHH
T ss_pred -----HcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 33445566677777777776321 233333455666666665554 4578888888888764321
Q ss_pred -----hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC---------------CC------C----hh-------
Q 000159 715 -----PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---------------HL------K----LK------- 757 (2013)
Q Consensus 715 -----~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~---------------~l------~----~k------- 757 (2013)
-.-+++.|+..+ ++.++.++.+++..|.++....-.. .+ + ++
T Consensus 414 ~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv 492 (810)
T 3now_A 414 EKLIEDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492 (810)
T ss_dssp HHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH
Confidence 123466666665 5778999999999999998743100 00 0 11
Q ss_pred --hHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccC
Q 000159 758 --DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (2013)
Q Consensus 758 --~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~ 835 (2013)
..++.+..+ +.+.++.||+.|..+|..|.. .+..+..+ -+ .+
T Consensus 493 eaGaVp~LV~L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~V-----------v~-------~G--------------- 536 (810)
T 3now_A 493 NEGITTALCAL-AKTESHNSQELIARVLNAVCG--LKELRGKV-----------VQ-------EG--------------- 536 (810)
T ss_dssp HTTHHHHHHHH-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHH-----------HH-------TT---------------
T ss_pred HCcCHHHHHHH-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHH-----------HH-------CC---------------
Confidence 245566666 788889999999888877742 11122111 00 00
Q ss_pred CCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCC-CC-ChhhHHHHHHhccc-chhHHHH
Q 000159 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-PA-GTGELFGGLRGRLY-DSNKNLV 912 (2013)
Q Consensus 836 s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~-~~-~~~eL~~~L~~rL~-DsN~~V~ 912 (2013)
..+.|+..+.+...+.|..|...|..++...++.+. .. ...+.++.|...|. |.+...+
T Consensus 537 ------------------aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~ 598 (810)
T 3now_A 537 ------------------GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALEN 598 (810)
T ss_dssp ------------------HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHH
T ss_pred ------------------CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHH
Confidence 123455666666677899999999998875433221 11 11346788888885 3344445
Q ss_pred HHHHHHHHHHHHHhChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCC
Q 000159 913 MATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAK 984 (2013)
Q Consensus 913 ~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k 984 (2013)
..|+.++..|+..-...-...+ ...+|.++..|.+.+..|+.+|..+|..++..-. -...++.+...+.+.
T Consensus 599 ~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~- 677 (810)
T 3now_A 599 FESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE- 677 (810)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-
Confidence 6788888888854211111222 2478999999999999999999999998874311 123567777777765
Q ss_pred CChhhHHHHHHHHHHHhccCCCC-CCh---hhhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000159 985 LGAEGRKDLFDWLSKQLTGLSGF-PDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 985 ~~p~~R~~~l~~L~~~l~~~~~~-~~~---~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+..+|.+++..|.......... ..+ ...+++|+..|.+.+.+||+.|..++..+..
T Consensus 678 -d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 678 -DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp -SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 4678888776665433322210 111 3467789999999999999999999988765
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.61 E-value=2.1e-05 Score=101.83 Aligned_cols=482 Identities=13% Similarity=0.065 Sum_probs=272.3
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--C
Q 000159 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--L 399 (2013)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~ai~~~~--~--~ 399 (2013)
.++.|.+.+.+.+..++..|+.+|..|+..-...-.-. ....++.|++.+... ...++..+..+|..+.... . .
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 46666677788899999999999999986432111111 236889999998754 7888888888888765320 0 0
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
.-...++.+...+++.++.++..++..|..+........-.-.-...+|.+++++.+.++++|..+..+|..+.. +..
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--~~~ 175 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQ 175 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--CCH
Confidence 001367788888999999999999999998776543211100114678999999999999999999999986653 322
Q ss_pred hHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000159 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2013)
Q Consensus 480 ~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2013)
.....+-.-+. ...+.+.+...
T Consensus 176 ~~~~~i~~~~~--i~~L~~ll~~~-------------------------------------------------------- 197 (529)
T 1jdh_A 176 ESKLIILASGG--PQALVNIMRTY-------------------------------------------------------- 197 (529)
T ss_dssp HHHHHHHHTTH--HHHHHHHHHHC--------------------------------------------------------
T ss_pred HHHHHHHHCCC--HHHHHHHHHhC--------------------------------------------------------
Confidence 11111111000 00111111100
Q ss_pred CCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhcC-CCHHHHHHHHHHHHHHHHhccCcchH
Q 000159 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQS 638 (2013)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~ 638 (2013)
+.++....+ ..++..|.. ..-+.. ++.. ..
T Consensus 198 ------------------------------~~~~~~~~a-----~~~L~~l~~~~~~~~~---------~~~~-----g~ 228 (529)
T 1jdh_A 198 ------------------------------TYEKLLWTT-----SRVLKVLSVCSSNKPA---------IVEA-----GG 228 (529)
T ss_dssp ------------------------------CCHHHHHHH-----HHHHHHHTTSTTHHHH---------HHHT-----TH
T ss_pred ------------------------------ChHHHHHHH-----HHHHHHHhcCcccHHH---------HHHC-----CC
Confidence 000000000 011111111 111100 0000 11
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC--
Q 000159 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG-- 714 (2013)
Q Consensus 639 ~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~-- 714 (2013)
.+.++.+ +.+.+..+...++.++..+....+... ....++|.|+.-+.+ ..++..+..+|..++....
T Consensus 229 ~~~L~~l------l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 300 (529)
T 1jdh_A 229 MQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300 (529)
T ss_dssp HHHHHTT------TTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHH------HhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 2333333 345566778888888887776433321 234567777776654 5678888888888765311
Q ss_pred h-----hHHHHHHHHHhhh-CCChhHHHHHHHHHHHHHHHhCCC-----CCChhhHHHHHHhcCCCCCc-HhHHHHHHHH
Q 000159 715 P-----GFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSA-AATRNATIKL 782 (2013)
Q Consensus 715 ~-----~~Vl~~L~~~l~~-~KnpKv~~~~l~~L~~li~~fG~~-----~l~~k~li~~l~~~gL~~~n-~~VR~aA~~l 782 (2013)
- .-+++.++..+.. ..++.++..++..|..+....+.. .+--...++.+..+ +.+.+ +.||..|..+
T Consensus 301 ~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH-hccccchHHHHHHHHH
Confidence 0 1245666666543 345899999999998875321110 00001245666666 88776 6999999999
Q ss_pred HHHHHHhhChhHHhhh--hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHH
Q 000159 783 LGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (2013)
Q Consensus 783 l~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~ 860 (2013)
++.+.. ++.....+ .++-|.+...+.....+++.+..-. +. .. .+....
T Consensus 380 l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~----l~------------n~-----~~~~~~------ 430 (529)
T 1jdh_A 380 IRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----GT------------QQ-----QFVEGV------ 430 (529)
T ss_dssp HHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC--------------------------------CBTTB------
T ss_pred HHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcc----cC------------ch-----hhhccc------
Confidence 888864 33332322 3566777777766544443211000 00 00 000000
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hh
Q 000159 861 SLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KG 936 (2013)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~il~~a~--~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~ 936 (2013)
....++..++..+..++.... ..+. -...++.|...+.|.+..|+..++.++..++. .+.....+ ..
T Consensus 431 ----~~~~i~~~~~~al~~L~~~~~~~~~l~---~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~--~~~~~~~i~~~~ 501 (529)
T 1jdh_A 431 ----RMEEIVEGCTGALHILARDVHNRIVIR---GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEG 501 (529)
T ss_dssp ----CHHHHHHHHHHHHHHHTTSHHHHHHHH---HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHTT
T ss_pred ----cHHHHHHHHHHHHHHHhcCchHHHHHh---ccCCccHHHHHHcCCchHHHHHHHHHHHHHhc--CHHHHHHHHHcC
Confidence 011223344455554432100 0011 02356788888999999999999998888762 12222222 13
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAW 963 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i 963 (2013)
.++.+...+.+.++.|+..|..+|..+
T Consensus 502 ~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 502 ATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 567888888899999999988887654
No 46
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.61 E-value=5.6e-05 Score=97.89 Aligned_cols=461 Identities=13% Similarity=0.059 Sum_probs=264.2
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChh
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~-----~~l~~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
....+|.+++.+++..+.+++.+..+|..+..... ......++.+...+.+ .++.++..++..|..+... +.
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~- 92 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE- 92 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HH-
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-ch-
Confidence 45678999999999999999999999998875310 0112567788888875 4899999999999885332 11
Q ss_pred HHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000159 438 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (2013)
Q Consensus 438 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~ 516 (2013)
..... -...+|.++.++.+.+++||..|..+|+.+...-.+. +..+.+. +
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~--g-------------- 143 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------------KMAVRLA--G-------------- 143 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHH--T--------------
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-------------HHHHHHc--C--------------
Confidence 11111 1358899999999999999999999998887653321 1111110 0
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHH
Q 000159 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (2013)
Q Consensus 517 ~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~ 596 (2013)
T Consensus 144 -------------------------------------------------------------------------------- 143 (529)
T 1jdh_A 144 -------------------------------------------------------------------------------- 143 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000159 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (2013)
Q Consensus 597 ~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l 670 (2013)
.-+.++..|.+.+|+.|..+...|..+.....+. ....+.+++++... ....+...+..++..+
T Consensus 144 -----~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 144 -----GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVL 213 (529)
T ss_dssp -----HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC-----ChHHHHHHHHHHHHHH
Confidence 0023445556666777766666665443211000 00122333333210 0111111222222111
Q ss_pred HHHcCCCchhhHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhC
Q 000159 671 AATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (2013)
Q Consensus 671 ~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG 750 (2013)
.. ++..+.. +.+ .-+++.+++.+ .+.++.++..++..|..+.....
T Consensus 214 ~~----------------------~~~~~~~-------~~~----~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 214 SV----------------------CSSNKPA-------IVE----AGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp TT----------------------STTHHHH-------HHH----TTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCT
T ss_pred hc----------------------CcccHHH-------HHH----CCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCCh
Confidence 10 1111111 111 11345555554 45688888888888888776432
Q ss_pred CCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccC
Q 000159 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (2013)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2013)
. ......+++.+..+ +.+.++.||..|..++..|... ++.....+ . +..
T Consensus 260 ~-~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~-----------~----~~~------------- 308 (529)
T 1jdh_A 260 K-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------C----QVG------------- 308 (529)
T ss_dssp T-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTT-CHHHHHHH-----------H----HTT-------------
T ss_pred h-hHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH-----------H----HcC-------------
Confidence 2 22346788888888 9999999999999999887432 11111111 0 000
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcC--CCChHHHHHHHHHHHHHHHhcccc---CCCCC-hhhHHHHHHhcc
Q 000159 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAVNKILEEANKR---IQPAG-TGELFGGLRGRL 904 (2013)
Q Consensus 831 ~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~--d~~Wk~R~eale~l~~il~~a~~~---I~~~~-~~eL~~~L~~rL 904 (2013)
..+.++..+. +.+|.+|..|+..|..+.... .. .+... -...++.|...|
T Consensus 309 -----------------------~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~i~~~~~i~~L~~lL 364 (529)
T 1jdh_A 309 -----------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRH-QEAEMAQNAVRLHYGLPVVVKLL 364 (529)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS-TTHHHHHHHHHHTTCHHHHHHTT
T ss_pred -----------------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHcCChhHHHHHh
Confidence 1123444443 235888999988888775311 00 00000 023467788888
Q ss_pred cchh-HHHHHHHHHHHHHHHHHhChhhHh-hh-hhHHHHHHHHhCCCcHHHHHHHH----------------------HH
Q 000159 905 YDSN-KNLVMATLITLGAVASAMGPAVEK-SS-KGVLSDILKCLGDNKKHMRECTL----------------------TV 959 (2013)
Q Consensus 905 ~DsN-~~V~~~Al~~l~~La~alg~~~~~-~~-~~llp~ll~~L~D~k~~Vr~aa~----------------------~a 959 (2013)
.+.+ ..++..++.+++.++. ++.... +. ..++|.++..|.+....+|..+. .+
T Consensus 365 ~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~a 442 (529)
T 1jdh_A 365 HPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442 (529)
T ss_dssp STTCCHHHHHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHH
Confidence 8776 5899999999999884 333222 22 25789999998876666665433 33
Q ss_pred HHHHHHhc------CchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC-C--hhhhHHHHHhhcCCCChHHHH
Q 000159 960 LDAWLAAV------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-D--AAHLLKPASIAMTDKSSDVRK 1030 (2013)
Q Consensus 960 L~~i~~~~------gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~-~--~~~ll~pl~~~L~D~~~dVR~ 1030 (2013)
|..++... .-...++.+...+.++ ++.+|..+...|..... ..... . -...+.++..++.|.+++||+
T Consensus 443 l~~L~~~~~~~~~l~~~~~v~~l~~ll~~~--~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~ 519 (529)
T 1jdh_A 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVAT 519 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHHH
T ss_pred HHHHhcCchHHHHHhccCCccHHHHHHcCC--chHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHHHH
Confidence 33322110 0123456777778766 47788777766665331 11000 0 123456688889999999999
Q ss_pred HHHHHHHHH
Q 000159 1031 AAEACIVEI 1039 (2013)
Q Consensus 1031 aA~~~L~~l 1039 (2013)
.|..+|..+
T Consensus 520 ~a~~aL~~l 528 (529)
T 1jdh_A 520 YAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999888654
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.56 E-value=6.4e-06 Score=107.35 Aligned_cols=375 Identities=11% Similarity=0.120 Sum_probs=234.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccC--cc-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--~~-----~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~ 676 (2013)
+++++.+.|.+-..++.|+..+.+++..... .+ ...+.|+++|. .+.|..++..+..+|..++.....
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 6788999999999999999999988754221 11 12355666663 345677888888888888753211
Q ss_pred CchhhH-HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC--hhH-----HHHHHHHHhhhCC----ChhHHHHHHHHH
Q 000159 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDHK----NPKVLSEGILWM 742 (2013)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~--~~~-----Vl~~L~~~l~~~K----npKv~~~~l~~L 742 (2013)
.....+ .-++|.|+.-+.+ ..++..|..+|..++.... -.. +++.++..+.... ...+...++..+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 1267888876665 4688999889988875311 111 2344444442211 222333444444
Q ss_pred HHHHHHhCCC-C-CChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCC
Q 000159 743 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (2013)
Q Consensus 743 ~~li~~fG~~-~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~ 820 (2013)
+.+....... . ..+..+++.+..+ +.+.++.|+..|..+|..|...... ....+ ..
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~~------------~~~~v----~~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNE------------RIEMV----VK----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHH------------HHHHH----HT-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhhh------------hHHHH----Hh-----
Confidence 4444321111 1 1235678888888 9999999999998888766532110 00000 00
Q ss_pred CCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC-ChhhHHHH
Q 000159 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGG 899 (2013)
Q Consensus 821 ~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~-~~~eL~~~ 899 (2013)
..+.+.|+..+.+.++.++..++..|..++... ...... .-...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 003456777888999999999999999887421 100000 01235567
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------
Q 000159 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 970 (2013)
Q Consensus 900 L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~-------- 970 (2013)
|...|.+.+..++..|+.+++.|+..-....... -..++|.++..|.+....++..|..+|..++.....+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 7778888899999999999999885322222222 2358999999999999999999999999888765422
Q ss_pred hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc---CCCCCChhhh------HHHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~---~~~~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
.+++.+...|.++ ++.++..++..|...+.. .+....+..+ +..|-....+.|.+|++.|...+..+
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2467788888765 578888777777665532 2211111112 22234455789999999988777655
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.54 E-value=4.3e-06 Score=108.45 Aligned_cols=376 Identities=11% Similarity=0.120 Sum_probs=234.5
Q ss_pred cHHHHhhhcCCCHHHHHHHHHHHHHHHHhcc--Ccch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000159 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ--NLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (2013)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~--~~~~-----~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~ 675 (2013)
-+++++.+.|.|-..++.|...+.+++.... +.+. ..+.|+++|. .+.|..++..+.-+|..++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCH
Confidence 3788999999999999999999998875422 1111 2345566553 24467788888888888875321
Q ss_pred CCchhhHH-HHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC--hhH-----HHHHHHHHhhhC----CChhHHHHHHHH
Q 000159 676 KFPKKCVV-LCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDH----KNPKVLSEGILW 741 (2013)
Q Consensus 676 ~~~~~~~~-~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~--~~~-----Vl~~L~~~l~~~----KnpKv~~~~l~~ 741 (2013)
......+. -.+|.|+.-+.+ ..++..|..+|..++.... -+. .+..++..+... ....+...++..
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 11111111 268888887765 4689999999998875321 111 234444444211 122334445555
Q ss_pred HHHHHHHhCCC-CC-ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCC
Q 000159 742 MVSAVEDFGVS-HL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (2013)
Q Consensus 742 L~~li~~fG~~-~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~ 819 (2013)
+..+...-... .+ .+..+++.+..+ +.+.++.|+..|..++..|.... . .....+ ..
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~~~--~----------~~~~~i----~~---- 272 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGP--N----------ERIEMV----VK---- 272 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSC--H----------HHHHHH----HT----
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhch--h----------hhHHHH----Hh----
Confidence 55544321111 11 235688888888 99999999999998887664211 0 000000 00
Q ss_pred CCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHH
Q 000159 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFG 898 (2013)
Q Consensus 820 ~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-~~eL~~ 898 (2013)
..+.+.|+..+.+.++.++..++..|..++... ....... -...+.
T Consensus 273 --------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 273 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALA 319 (510)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGG
T ss_pred --------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchH
Confidence 003456778888999999999999999886421 0000000 023455
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-------
Q 000159 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD------- 970 (2013)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~------- 970 (2013)
.|...|.+.+..++..|+.+++.|+..-....... -..++|.++..|.+....+|..|..+|..+......+
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 66677888999999999999999874322222222 2358899999999999999999999999888765422
Q ss_pred -hhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc---CCCCCChhhhH------HHHHhhcCCCChHHHHHHHHHHHHH
Q 000159 971 -KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEI 1039 (2013)
Q Consensus 971 -~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~---~~~~~~~~~ll------~pl~~~L~D~~~dVR~aA~~~L~~l 1039 (2013)
.+++.+...|.++ ++.++..++..|...+.. .+....+..++ ..|-.+..+.|.+|++.|...+..+
T Consensus 400 ~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 400 CGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3466778888765 577888877777665542 22211122221 2233445788999999888776554
No 49
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.49 E-value=0.025 Score=79.69 Aligned_cols=510 Identities=11% Similarity=0.062 Sum_probs=268.1
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc----hhhhHhHHH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF----SGSSRFLLP 369 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~llp 369 (2013)
+-+.+=..|++|-+.|..+-+.|. .+.-+...|.. +.+..++..|+.++....+.--..+ ..+++..+-
T Consensus 25 ~~~p~~~~r~~Ae~~L~~~~~~p~----~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 25 FYQGSGVQQKQAQEILTKFQDNPD----AWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHSTT----GGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHhCch----HHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 334444579999999988866552 12223333322 5678899999999988776421222 233333332
Q ss_pred HHHHHhc-cC-----cHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC---h---
Q 000159 370 VLLEKLK-EK-----KPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---K--- 436 (2013)
Q Consensus 370 ~LL~klk-dk-----k~~V~~aa~~aL~ai~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~---~--- 436 (2013)
..+.... +. .+.|+..+..++..++.+ .....++++++|...++ .++..+..++.+|..+.+... .
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~ 176 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQM 176 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 2222222 21 368899999999999987 22345789999988886 566667777777766553221 0
Q ss_pred ---------hHHHHhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCch------hHHHHHhhc--cHHHHHHHHH
Q 000159 437 ---------AAVLKVHKDYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMR------PLERSIEKL--DDVRRNKLSE 498 (2013)
Q Consensus 437 ---------~~l~~~l~~l~p~l~k~l~Ds-~~~VR~aA~~al~~l~~~~Ge~------~~~~~l~~L--d~~~~kki~e 498 (2013)
..+...++.+...+..++++. ++++|.++.+|+..+...+.-. .+.-++..+ ++.-+...-+
T Consensus 177 ~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~~a~~ 256 (1049)
T 3m1i_C 177 TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLK 256 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHHHHHH
Confidence 223344667777778887653 5789999999998776544321 111111111 1211111112
Q ss_pred HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCC
Q 000159 499 MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLT 578 (2013)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~ 578 (2013)
++.... + .+.+
T Consensus 257 ~L~~i~--------------------------------------~-~~~~------------------------------ 267 (1049)
T 3m1i_C 257 CLTEVS--------------------------------------N-LKIP------------------------------ 267 (1049)
T ss_dssp HHHHHH--------------------------------------H-CCCC------------------------------
T ss_pred HHHHHH--------------------------------------h-CCCC------------------------------
Confidence 211100 0 0000
Q ss_pred CCCCCCCCCCCCHHH-H-------HHHhhc-cCcHH--HHhhh---cCCCHHHHHHHHHHHHHH-------HHhccCcch
Q 000159 579 EAPEDVEPSEMSLEE-I-------ESRLGS-LIPAD--TVGQL---KSAVWKERLEAISSLRQQ-------VEAVQNLDQ 637 (2013)
Q Consensus 579 ~~~~~~~~~~~S~ee-~-------e~~~~~-~l~~~--l~~~L---~s~~Wk~Rl~ale~L~~~-------v~~~~~~~~ 637 (2013)
+...-.++ + -..+.. +++.. +...+ .+.++..+..-.+-+..+ +...+....
T Consensus 268 -------~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (1049)
T 3m1i_C 268 -------QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE 340 (1049)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred -------cchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH
Confidence 00000000 0 000000 11100 00000 111121111111111111 111111111
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc---C---CCchhhHHHHHHHHHhhhcC----------h-----
Q 000159 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---T---KFPKKCVVLCLLGISERVAD----------I----- 696 (2013)
Q Consensus 638 ~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~---~---~~~~~~~~~il~~LveKlgD----------~----- 696 (2013)
....++.++..... ..+..|...++++|..+++.. + ......+..+++.++.++.- .
T Consensus 341 ~l~~~l~~ll~~~~--~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r 418 (1049)
T 3m1i_C 341 LLLNAHQYLIQLSK--IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVR 418 (1049)
T ss_dssp HHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchH
Confidence 22233333321111 124567888999999888732 1 22344667777888877621 1
Q ss_pred ---------hhhHHHHHHHHHHHhhhChhHHHHHHHHHhh---h--CCChhHHHHHHHHHHHHHHHhCCCCC-C-hhhHH
Q 000159 697 ---------KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D--HKNPKVLSEGILWMVSAVEDFGVSHL-K-LKDLI 760 (2013)
Q Consensus 697 ---------K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~---~--~KnpKv~~~~l~~L~~li~~fG~~~l-~-~k~li 760 (2013)
-.+..+.++|..++.. .+..+++.+++.+. . ..+|+.+.+++..++.+.+..+...- . +..++
T Consensus 419 ~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~ 497 (1049)
T 3m1i_C 419 EFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVI 497 (1049)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHH
Confidence 1244678888888854 44555555555431 1 46899999999888866543221100 1 23455
Q ss_pred HHHHhcCCC-----CCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccC
Q 000159 761 DFCKDTGLQ-----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (2013)
Q Consensus 761 ~~l~~~gL~-----~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~ 835 (2013)
+.+..+ .. +..+.||..+..+++.+..|+... ..||. .
T Consensus 498 ~~l~~l-~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~-------~---------------------------- 540 (1049)
T 3m1i_C 498 KDLLDL-TVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLR-------T---------------------------- 540 (1049)
T ss_dssp HHHHHH-TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHH-------H----------------------------
T ss_pred HHHHHH-HhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHH-------H----------------------------
Confidence 555443 22 234566666777777766554321 01110 0
Q ss_pred CCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCC--------CCChhhHHHHHHhcccch
Q 000159 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--------PAGTGELFGGLRGRLYDS 907 (2013)
Q Consensus 836 s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~--------~~~~~eL~~~L~~rL~Ds 907 (2013)
+.+.++..+.+.+-++|..|...+..++..+...+. |. +.+|+..|...+.+.
T Consensus 541 ------------------vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~-~~~il~~l~~~~~~~ 601 (1049)
T 3m1i_C 541 ------------------VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF-IQTIIRDIQKTTADL 601 (1049)
T ss_dssp ------------------HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH-HHHHHHTHHHHHTTS
T ss_pred ------------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH-HHHHHHHHHHHHHhC
Confidence 122455556677788899999999999987644432 33 467777776666543
Q ss_pred hHHHHHHHHHHHHHHHHHhCh--hhHhhhhhHHHHHHHHhC
Q 000159 908 NKNLVMATLITLGAVASAMGP--AVEKSSKGVLSDILKCLG 946 (2013)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~--~~~~~~~~llp~ll~~L~ 946 (2013)
...-....+++++.++.+.+. .+.+|+..+++.++..+.
T Consensus 602 ~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~ 642 (1049)
T 3m1i_C 602 QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD 642 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333345667889999988883 477889999888876654
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.48 E-value=0.00029 Score=93.22 Aligned_cols=241 Identities=11% Similarity=0.054 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHH
Q 000159 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2013)
Q Consensus 733 Kv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2013)
-|..+|+..+..+ +...--++..+..+..+ +.++++++|-.|...+..+....+. . .+
T Consensus 308 aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~-L~~~~~niry~aL~~l~~l~~~~~~-~-~~--------------- 365 (621)
T 2vgl_A 308 AVLFEAISLIIHH----DSEPNLLVRACNQLGQF-LQHRETNLRYLALESMCTLASSEFS-H-EA--------------- 365 (621)
T ss_dssp HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH-SSCSCHHHHHHHHHHHHHHTTCTTT-H-HH---------------
T ss_pred HHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhccCc-H-HH---------------
Confidence 5666666655443 22110123455666677 8888999999999888776432110 0 00
Q ss_pred HhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcC-CCChHHHHHHHHHHHHHHHhccccCCCC
Q 000159 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPA 891 (2013)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~-d~~Wk~R~eale~l~~il~~a~~~I~~~ 891 (2013)
+ ......++..+. |.+-.+|..+++.+..++.+.
T Consensus 366 ~--------------------------------------~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~------- 400 (621)
T 2vgl_A 366 V--------------------------------------KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS------- 400 (621)
T ss_dssp H--------------------------------------HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-------
T ss_pred H--------------------------------------HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-------
Confidence 0 001235666677 888889999999999887643
Q ss_pred ChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c-
Q 000159 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L- 969 (2013)
Q Consensus 892 ~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l- 969 (2013)
+..+++..|...+.+.+..++..++..|+.+|....+.+..|+..++ +.+.+....+.+.+...+..++.... +
T Consensus 401 Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~~~ 476 (621)
T 2vgl_A 401 NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTIL----NLIRIAGDYVSEEVWYRVIQIVINRDDVQ 476 (621)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCSCH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH----HHHHhhcccchHHHHHHHHHHHhCChhHH
Confidence 25788888888888888899999999999999887777766655444 33333333355555556666655443 2
Q ss_pred hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhcc-CCCCCC--hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000159 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG-LSGFPD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2013)
Q Consensus 970 ~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~-~~~~~~--~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~ 1045 (2013)
...+..+.+.+.++... ..=..+..|+..-+.. ....+. ..+.+..+...+.+.++.||..+-.++..+....++
T Consensus 477 ~~~~~~l~~~l~~~~~~-~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 477 GYAAKTVFEALQAPACH-ENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp HHHHHHHHHHHTSSSCC-HHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHcCccch-HHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 22345566777654211 1111233465332221 111111 134566677788899999999999999888777653
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.48 E-value=2.1e-05 Score=102.01 Aligned_cols=380 Identities=12% Similarity=0.117 Sum_probs=237.9
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CCh--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDF--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2013)
+++.+.+.+.+-..+.+|+..++++++..+-.+ ... ..+++.|.+.|+ +.+..+...|+.+|..||.+-...-...
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 467888999999999999999999885332222 000 135778888887 6678899999999999996533222222
Q ss_pred hH-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000159 364 SR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (2013)
Q Consensus 364 ~~-~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~------~il~~l~~~l~~Kn-----p~vR~~~l~~L~~~l 431 (2013)
+. ..+|.|+..+++....|++.+..||..+... +.... ..++.+...+...+ ..+...++..|..+.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 4799999999999999999999999998754 11111 23456666665433 233444444444433
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000159 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (2013)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~ 511 (2013)
.......-......++|.|.+++.+.+++|+..|..+|..+... .. .....+ ...
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~-----------~~~~~i---~~~--------- 273 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN-----------ERIEMV---VKK--------- 273 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CH-----------HHHHHH---HTT---------
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hh-----------hhHHHH---Hhc---------
Confidence 32211111123467899999999999999999998888655421 11 001111 000
Q ss_pred CCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH
Q 000159 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (2013)
Q Consensus 512 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ 591 (2013)
T Consensus 274 -------------------------------------------------------------------------------- 273 (510)
T 3ul1_B 274 -------------------------------------------------------------------------------- 273 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHH--HHhcC-CCCcccHHHHHHHHHHHHH
Q 000159 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR--LVCML-PGWSEKNVQVQQQVIEVIN 668 (2013)
Q Consensus 592 ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~--~L~~~-pgl~DsN~qV~~~~Le~l~ 668 (2013)
-+.+.++..|.+.++..+..++..|..+....+. ....++. .+... .-+.+.+..|+..++-+|.
T Consensus 274 ---------g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~---~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 274 ---------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE---QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ---------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH---HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ---------ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH---HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0013456677888888888888888877543221 1222221 11000 1245677788888888887
Q ss_pred HHHHHcCCCchhh-HHHHHHHHHhhhc--ChhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHhhhCCChhHHHH
Q 000159 669 YLAATATKFPKKC-VVLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVLSE 737 (2013)
Q Consensus 669 ~l~~~~~~~~~~~-~~~il~~LveKlg--D~K~r~~a~e~L~~l~e~~~~~~--------Vl~~L~~~l~~~KnpKv~~~ 737 (2013)
.++.......... -..++|.|+.-+. +.++|..|..+|..++....++. +++.|+..+ ..++++++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHH
Confidence 7654211111111 1235677777664 45788888889988887655443 245556654 7889999999
Q ss_pred HHHHHHHHHHHhCCCC-C-Chh------hHHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 738 GILWMVSAVEDFGVSH-L-KLK------DLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 738 ~l~~L~~li~~fG~~~-l-~~k------~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
++..|..+++...... . ... ..++.+..+ ..|.|..|++.|..++-..|
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999998886321110 0 011 134456666 67899999999999875544
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.46 E-value=3.1e-05 Score=100.80 Aligned_cols=377 Identities=12% Similarity=0.113 Sum_probs=234.6
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCC-Ch--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DF--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~-~~--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2013)
+.+.+.+.+.+-..+.+|+..++++++..+-.+- .. ..+++.|.+.+. +.+..+...|+.+|..|+.+-...-...
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3678888999999999999999998853322220 01 246677888887 6778899999999999997543222212
Q ss_pred -hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000159 364 -SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (2013)
Q Consensus 364 -~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~------~il~~l~~~l~~Kn-----p~vR~~~l~~L~~~l 431 (2013)
-...+|.|+..+......|++.+..||..+... +.... ..++.++..+...+ ..+...++..|..+.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 225789999999999999999999999988754 11111 13456666665433 223334444444433
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000159 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (2013)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~ 511 (2013)
.......-......++|.|.+++.+.+++|+..|+.+|..+... .. .....+ +..
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~-----------~~~~~v---~~~--------- 292 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN-----------ERIEMV---VKK--------- 292 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CH-----------HHHHHH---HTT---------
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hh-----------hhHHHH---Hhc---------
Confidence 22211111123467899999999999999999888777655421 11 001111 000
Q ss_pred CCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH
Q 000159 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (2013)
Q Consensus 512 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ 591 (2013)
T Consensus 293 -------------------------------------------------------------------------------- 292 (529)
T 3tpo_A 293 -------------------------------------------------------------------------------- 292 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc------hHHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 000159 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIE 665 (2013)
Q Consensus 592 ee~e~~~~~~l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~lv~~L~~~pgl~DsN~qV~~~~Le 665 (2013)
-+.+.++..|.+.++..+..++..|..++...+... ...+.++.+| .+.+..|...++-
T Consensus 293 ---------g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 293 ---------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATW 357 (529)
T ss_dssp ---------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHH
T ss_pred ---------cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHH
Confidence 001345566777888888888888877654321110 0122344443 4556678888888
Q ss_pred HHHHHHHHcCCCchhh-HHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHhhhCCChhH
Q 000159 666 VINYLAATATKFPKKC-VVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKV 734 (2013)
Q Consensus 666 ~l~~l~~~~~~~~~~~-~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~--------Vl~~L~~~l~~~KnpKv 734 (2013)
+|..++.......... -..++|.|+.-+.+ .+++..|.-+|..++....++. +++.|+..+ ..+++++
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i 436 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKI 436 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHH
Confidence 8877764211111111 12357777766554 5788888888888877655443 245566654 6889999
Q ss_pred HHHHHHHHHHHHHHhCCCC-C-Chhh------HHHHHHhcCCCCCcHhHHHHHHHHHHHHH
Q 000159 735 LSEGILWMVSAVEDFGVSH-L-KLKD------LIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2013)
Q Consensus 735 ~~~~l~~L~~li~~fG~~~-l-~~k~------li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 787 (2013)
+..++..|..++....... . .+.. .++.+..+ ..|.|..|++.|..++-..|
T Consensus 437 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 437 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999999988875321110 0 0111 24455666 77899999999998875443
No 53
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.44 E-value=4e-06 Score=95.04 Aligned_cols=182 Identities=20% Similarity=0.176 Sum_probs=137.3
Q ss_pred chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh
Q 000159 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2013)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (2013)
.+.|+..+.|.+|.+|..|++.|..+-. .+.++.|...|.|.+..|+..|+.+++.+..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 4578889999999999999998876421 4677888889999999999999999887641
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhH
Q 000159 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014 (2013)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll 1014 (2013)
...++.++..|.|..+.||.++..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~~ 145 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERAV 145 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-C-------CGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCC--CHHHHHHHHHHHHHc-C-------CHHHH
Confidence 34678899999999999999999998766 4456788899999876 689999999888764 1 13466
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHHhcC
Q 000159 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (2013)
Q Consensus 1015 ~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~ 1071 (2013)
..+...|.|.++.||..|..+|..+-..-..+.+...+++=++..+......+.+.+
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 778889999999999999999987632111223444444444555555555555543
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.42 E-value=5.1e-06 Score=93.45 Aligned_cols=177 Identities=21% Similarity=0.204 Sum_probs=135.1
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
..+.+++.+.|.+|.+|..|++.|..+-. .+.+..|...|.|.+..|+..|+..++.+. .
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~----- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D----- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-----
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C-----
Confidence 45678999999999999999999876421 356788888889999999999999888763 1
Q ss_pred hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhh
Q 000159 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (2013)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (2013)
...++.++..|.|..+.||..|..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~ 139 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERA 139 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-T-------CGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------CHHH
Confidence 24678899999999999999999999775 4456788889999876 689999999888764 1 1456
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhH----HHHHhccCChHHHHHHHHHHHh
Q 000159 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQET----IEKNLKDIQGPALALILERIKL 1069 (2013)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~----~~~~l~~L~~~~~~~i~~~l~k 1069 (2013)
+..+...+.|.++.||..|..+|..+ |... +...+.+=++..+......+.+
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh----CchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 67788999999999999999999877 4332 3333333344444444444444
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.40 E-value=3.7e-06 Score=95.32 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=135.1
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
+.+...+.+.+|..|..|+..|..+.. .+.++.|...+.|.+..|+..|+.+|+.+.. ...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 357777899999999999999988742 2467778888999999999999999988742 356
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (2013)
++.|++.+++..+.||.++..+|..+. -...++.|...+++.++.+|..++..|..+- . +..+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 145 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 145 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-------HHHH
Confidence 788999999999999998888887552 2457788889999999999999999987751 1 3467
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHhhccHHHHHHHHHHHhc
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kki~e~~~~ 502 (2013)
+.+..+++|.++.||.+|..+|+.+..--.-..+..++..=++.-|....+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999876321111123333333345445554555544
No 56
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.40 E-value=0.039 Score=77.79 Aligned_cols=534 Identities=10% Similarity=0.079 Sum_probs=267.1
Q ss_pred hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-
Q 000159 323 FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN- 400 (2013)
Q Consensus 323 ~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~- 400 (2013)
+..++..+...+. ..+..++..+++|+..+..-....+ -.-..+++.+++.+- ..+.++.++.+|+..++......
T Consensus 192 ~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~ 269 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQD 269 (1049)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcc
Confidence 4556666667776 4466788888888877654222111 011235666664443 26789999999999998752111
Q ss_pred ---hH----hHHHHHHHHhhc------------------CChHHHHHHHHHHHHHHHhcCh-----hHHHHhhhhHHHHH
Q 000159 401 ---LV----DVVEDVKTSVKN------------------KVPLVRSLTLNWVTFCIETSSK-----AAVLKVHKDYVPIC 450 (2013)
Q Consensus 401 ---l~----~il~~l~~~l~~------------------Knp~vR~~~l~~L~~~l~~~~~-----~~l~~~l~~l~p~l 450 (2013)
+. .+++.++..++. .........+.++..+++.+.. ..+...+..+++.+
T Consensus 270 ~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 349 (1049)
T 3m1i_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 11 222333332211 1233334455555544433211 11234457788888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHh----C-chhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCC
Q 000159 451 MECLNDGTPEVRDAAFSVLAAIAKSV----G-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (2013)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~al~~l~~~~----G-e~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~ 525 (2013)
..+....+.+|+..+.+....+...+ . ...+.+++..|-+ -++.+..-
T Consensus 350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~-------~ll~~m~~-------------------- 402 (1049)
T 3m1i_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRL-------VIIENMVR-------------------- 402 (1049)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHH-------HHHHTCCC--------------------
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-------HHHHhcCC--------------------
Confidence 88888889999999988777777632 1 1223344433322 22222100
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHH---------HHH
Q 000159 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE---------IES 596 (2013)
Q Consensus 526 ~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee---------~e~ 596 (2013)
|+... -. . .++.+.+.+..-..|+ +-.
T Consensus 403 ~ed~~--~~--------~----------------------------------dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 403 PEEVL--VV--------E----------------------------------NDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp CTTCC--EE--------E----------------------------------CTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred Cccee--ee--------e----------------------------------CCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 00000 00 0 0000001011111111 111
Q ss_pred HhhccCcHH--------HHhhhc--CCCHHHHHHHHHHHHHHHHhccCc-c-hHHHHHHHHHhcCCCC---cccHHHHHH
Q 000159 597 RLGSLIPAD--------TVGQLK--SAVWKERLEAISSLRQQVEAVQNL-D-QSVEILVRLVCMLPGW---SEKNVQVQQ 661 (2013)
Q Consensus 597 ~~~~~l~~~--------l~~~L~--s~~Wk~Rl~ale~L~~~v~~~~~~-~-~~~~~lv~~L~~~pgl---~DsN~qV~~ 661 (2013)
.+..+.+.+ +.+.+. +.+|+.|.+++-.++.+.+..... . .....++..|...|.+ +|.+..|..
T Consensus 439 ~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~ 518 (1049)
T 3m1i_C 439 YLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVAS 518 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHH
Confidence 112222322 222333 479999999999998665432211 1 1134445544322333 245666665
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhChhHH----------HHHHHHHh---
Q 000159 662 QVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFI----------FERLYKIM--- 726 (2013)
Q Consensus 662 ~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~V----------l~~L~~~l--- 726 (2013)
.++.++..+.+-... ....+..+++.+++.+.| ++++..|..+|..+++.++...+ ++.++..+
T Consensus 519 ~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~ 597 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKT 597 (1049)
T ss_dssp HHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 677777755442211 234677888888888887 57999999999999998765433 55555533
Q ss_pred hhCCChhHHHHHHHHHHHHHHHhCC-CCC-C-hhh----HHHHHHhcCCC----C---C-cHh-HHH--HHHHHHHHHHH
Q 000159 727 KDHKNPKVLSEGILWMVSAVEDFGV-SHL-K-LKD----LIDFCKDTGLQ----S---S-AAA-TRN--ATIKLLGALHK 788 (2013)
Q Consensus 727 ~~~KnpKv~~~~l~~L~~li~~fG~-~~l-~-~k~----li~~l~~~gL~----~---~-n~~-VR~--aA~~ll~~Ly~ 788 (2013)
...-..+......+.+..++...|. ... . +.. ++..+... +. + . +++ ++. ...+++..+..
T Consensus 598 ~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~ 676 (1049)
T 3m1i_C 598 TADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI-VEQSTANPTLLLDSETVKIIANIIKTNVAVCT 676 (1049)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH-HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 2233455566667777777766552 100 0 111 22111111 11 0 0 222 232 22445666677
Q ss_pred hhChhHHhhhhhccHHHHHHHHHH---HhhC-CCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC
Q 000159 789 FVGPDIKGFLADVKPALLSALDAE---YEKN-PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (2013)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~e---f~k~-~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d 864 (2013)
.+|..+.+++..+-+..+..+..- ++.. ...+++. . .-|.+.....+.+.+
T Consensus 677 ~l~~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~-~------------------~~p~~~~~~~~~~~l------ 731 (1049)
T 3m1i_C 677 SMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA-T------------------KTPKVRGLRTIKKEI------ 731 (1049)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-G------------------GSHHHHHHHHHHHHH------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchh-h------------------hhHHHHHHHHHHHHH------
Confidence 888887777655444333222211 1100 0000000 0 000000000011111
Q ss_pred CChHHHHHHHHHHHHHHHhcccc----CCCCChhhHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHH
Q 000159 865 PDWKVRLESIEAVNKILEEANKR----IQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2013)
Q Consensus 865 ~~Wk~R~eale~l~~il~~a~~~----I~~~~~~eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (2013)
+..+...+... .. ..+. ..+++..+...+.. +..+. ..++.+++.++..+|..+.+|+..++
T Consensus 732 ---------~~ll~~~~~~~-~~l~~~~~~~-~~~~l~~ll~~~~~~~~~~~~-~~~l~l~~~ii~~~~~~~~~~l~~i~ 799 (1049)
T 3m1i_C 732 ---------LKLVETYISKA-RNLDDVVKVL-VEPLLNAVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQGVILIL 799 (1049)
T ss_dssp ---------HHHHHHHHHHC-SCHHHHHHHT-HHHHHHHHHHHHHHSCGGGCC-THHHHHHHHHHHHHGGGCHHHHHHHH
T ss_pred ---------HHHHHHHHHhC-CCHHHHHHHH-HHHHHHHHHHHHHhCCccccc-HHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 11122222110 00 0011 12233333222211 11111 45889999999999999999998888
Q ss_pred HHHHHHh-----C--CCcHHHHHHHHHHHHHHHHhcC
Q 000159 939 SDILKCL-----G--DNKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 939 p~ll~~L-----~--D~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
..++.+. + +..+.+|......+..++.++.
T Consensus 800 ~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~ 836 (1049)
T 3m1i_C 800 QSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSF 836 (1049)
T ss_dssp HHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCH
Confidence 8887774 3 4678899999999999998875
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.40 E-value=2.1e-05 Score=93.29 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=65.3
Q ss_pred HHHHHhhhcC--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 000159 686 LLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (2013)
Q Consensus 686 l~~LveKlgD--~K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l 763 (2013)
++.|+..+.| ..+|..|..+|..+. ...+++.+...+ .+.++.+|..++..|.. +|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~----l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILGQ----IKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHH----SCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHHH-cCCCHHHHHHHHHHHHH----hccccccchHHHHHH
Confidence 5566666665 357777777777654 345677777765 68899999998877754 443222345566776
Q ss_pred H-hcCCCCCcHhHHHHHHHHHHHHHH
Q 000159 764 K-DTGLQSSAAATRNATIKLLGALHK 788 (2013)
Q Consensus 764 ~-~~gL~~~n~~VR~aA~~ll~~Ly~ 788 (2013)
. .+ +.+.++.||..|..+|+.+..
T Consensus 96 ~~~~-~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 96 NNMA-LNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHH-HHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHHhc
Confidence 5 34 788999999999999998864
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.39 E-value=4.4e-06 Score=93.96 Aligned_cols=149 Identities=20% Similarity=0.192 Sum_probs=123.9
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
+.+.+.+.+.+|..|..|+..|..+.. ...+..|.+.+.|.+..|+..|+.+|+.+.. ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 568888999999999999999987642 2356777788899999999999999987642 256
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (2013)
++.|++.+.+..+.||..+..+|..+. -...++.|...+++.++.+|..++..|..+- -+..+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~ 140 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAV 140 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------CGGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHHHH
Confidence 788999999999999998888887652 2457888889999999999999999887641 14567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
+.+..++.|.++.||.+|..+|+.+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999877
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.38 E-value=1.1e-05 Score=95.60 Aligned_cols=223 Identities=14% Similarity=0.141 Sum_probs=158.2
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
++.++..+ .+.++.+|..++..|..+ |. ...++.+..+ +.+.++.||..|..+|+.+. ..-
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~----~~-----~~~~~~L~~~-l~d~~~~vR~~A~~aL~~l~----~~~---- 85 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLR----GG-----QDAVRLAIEF-CSDKNYIRRDIGAFILGQIK----ICK---- 85 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHH----CC-----HHHHHHHHHH-HTCSSHHHHHHHHHHHHHSC----CCT----
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHcc----CC-----chHHHHHHHH-HcCCCHHHHHHHHHHHHHhc----ccc----
Confidence 45566664 678999999888887654 32 3466677777 89999999999998876442 100
Q ss_pred hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHH-HhcCCCChHHHHHHHHHH
Q 000159 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV-KSLESPDWKVRLESIEAV 877 (2013)
Q Consensus 799 ~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll-~~l~d~~Wk~R~eale~l 877 (2013)
. . ...+.+-+. ..+.|.+|.+|..++..|
T Consensus 86 -~-------------------------------------------~------~~~l~~~L~~~~~~d~~~~vr~~a~~aL 115 (280)
T 1oyz_A 86 -K-------------------------------------------C------EDNVFNILNNMALNDKSACVRATAIEST 115 (280)
T ss_dssp -T-------------------------------------------T------HHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred -c-------------------------------------------c------chHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 0 000111222 135678999999999999
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHH
Q 000159 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (2013)
Q Consensus 878 ~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~ 957 (2013)
..+.... +....++++.|...+.|.+..|+..|+..++.+.. ...+|.++..+.|.+..||..|.
T Consensus 116 ~~l~~~~-----~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~ 180 (280)
T 1oyz_A 116 AQRCKKN-----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHhccC-----CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHH
Confidence 8876421 11125678888889999999999999998886643 23678899999999999999999
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000159 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 958 ~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
.+|..+. ..-...++.+...|.++ ++.+|..++..|...- ....++.+..+|.|.+ ||..|..+|.
T Consensus 181 ~aL~~~~--~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~--------~~~~~~~L~~~l~d~~--vr~~a~~aL~ 246 (280)
T 1oyz_A 181 FAININK--YDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRK--------DKRVLSVLCDELKKNT--VYDDIIEAAG 246 (280)
T ss_dssp HHHHHHT--CCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTT--------CGGGHHHHHHHHTSSS--CCHHHHHHHH
T ss_pred HHHHhhc--cCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC--------CHhhHHHHHHHhcCcc--HHHHHHHHHH
Confidence 9997762 22456788888888876 5889999998887531 2456677888888854 9999888887
Q ss_pred HH
Q 000159 1038 EI 1039 (2013)
Q Consensus 1038 ~l 1039 (2013)
.+
T Consensus 247 ~i 248 (280)
T 1oyz_A 247 EL 248 (280)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 60
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.18 E-value=0.019 Score=79.83 Aligned_cols=581 Identities=10% Similarity=0.064 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC----ChHHHHHHHHHHhc-----ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000159 300 SERKDAVAELTKLASTKRIAPG----DFTEVCRTLKKLIT-----DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~----~~~~l~~~L~k~l~-----D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2013)
..|--|+..|...++ .+... +...|-..|...+. +....|+...+.++..|+...- -..+..+++.
T Consensus 58 ~vr~fa~~~L~~~I~--~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~---p~~Wp~~i~~ 132 (980)
T 3ibv_A 58 STRLICLQTLSEKVR--EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY---PSNWNDFFAS 132 (980)
T ss_dssp HHHHHHHHHHHHHHH--HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHT---TTTCTTHHHH
T ss_pred HHHHHHHHHHHHHHH--hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhC---cccCchHHHH
Confidence 445567777766554 44455 44444444444443 2356688888888888887642 2344455555
Q ss_pred HHHHhccCcH-HHHHHHHHHHHHHHHh-cC----------------------CChHhHHHHHHHHh----hcCChHHHHH
Q 000159 371 LLEKLKEKKP-TVAESLTQTLQAMHKA-GC----------------------LNLVDVVEDVKTSV----KNKVPLVRSL 422 (2013)
Q Consensus 371 LL~klkdkk~-~V~~aa~~aL~ai~~~-~~----------------------~~l~~il~~l~~~l----~~Knp~vR~~ 422 (2013)
++..++.... .........|..+..- .. ..+..+++.+...| .+.++.++..
T Consensus 133 l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~ 212 (980)
T 3ibv_A 133 LQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGL 212 (980)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 5555543222 1111111122211111 00 01222333333333 3478889999
Q ss_pred HHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch-hHHHHHhhccHHHHHHHHHHHh
Q 000159 423 TLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR-PLERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 423 ~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~-~~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
+++.|..++.-.+...+.. ..+++.+.+++.+ +++|++|.+||..+...-... .-..++..| .+.+.+.
T Consensus 213 ~L~~l~s~i~wi~~~~i~~--~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l------~L~~~~~ 282 (980)
T 3ibv_A 213 CLQVYAQWVSWININLIVN--EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNIL------NLNLFFS 282 (980)
T ss_dssp HHHHHHHHTTTSCHHHHHC--HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH------HHHHHHC
T ss_pred HHHHHHHHHhhcCHHhhhc--chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH------hHHHHHH
Confidence 9999998887444443322 6788999999987 899999999999998764431 111222222 1222221
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCC
Q 000159 502 GSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAP 581 (2013)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~ 581 (2013)
... . .+
T Consensus 283 ~l~--------------------------------------~----------------------------------~~-- 288 (980)
T 3ibv_A 283 KSQ--------------------------------------E----------------------------------QS-- 288 (980)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HHh--------------------------------------c----------------------------------cc--
Confidence 100 0 00
Q ss_pred CCCCCCCCCHHHHHHHhhcc---CcHHHHhhhcCCC-H---HHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcc
Q 000159 582 EDVEPSEMSLEEIESRLGSL---IPADTVGQLKSAV-W---KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 654 (2013)
Q Consensus 582 ~~~~~~~~S~ee~e~~~~~~---l~~~l~~~L~s~~-W---k~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~D 654 (2013)
+ . .|.-..+..+ ++++++.. .+.. | ..+..+...+. ...+.+++.+..
T Consensus 289 ~-------D-~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~----------~ll~~lL~~~~~------ 343 (980)
T 3ibv_A 289 T-------D-PNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLY----------NLFPYLIRYLSD------ 343 (980)
T ss_dssp C-------C-HHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHH----------HTHHHHHHHHTC------
T ss_pred c-------c-HHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHH----------HHHHHHHHHhCC------
Confidence 0 0 1111111111 12233222 1111 1 11212222221 123444444432
Q ss_pred cHHHHHHHHHHHHHHHHHHc---CC---Cc---hhhHHHHHHHHHhhhcC-------h-----------hhhHHHHHHHH
Q 000159 655 KNVQVQQQVIEVINYLAATA---TK---FP---KKCVVLCLLGISERVAD-------I-----------KTRAHAMKCLT 707 (2013)
Q Consensus 655 sN~qV~~~~Le~l~~l~~~~---~~---~~---~~~~~~il~~LveKlgD-------~-----------K~r~~a~e~L~ 707 (2013)
...-|...++++|..++... +. .. ...+..+++.++.|+.= . -.|.... .|.
T Consensus 344 ~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~ 422 (980)
T 3ibv_A 344 DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQ 422 (980)
T ss_dssp SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHH
Confidence 12245556666666655432 11 11 13445555566655421 0 1355555 777
Q ss_pred HHHhhhChhHHHH----HHHHHhh------hCCChhHHHHHHHHHHHHHHHhCCCC-------CChhhHHHHHHhcCCC-
Q 000159 708 TFSEAVGPGFIFE----RLYKIMK------DHKNPKVLSEGILWMVSAVEDFGVSH-------LKLKDLIDFCKDTGLQ- 769 (2013)
Q Consensus 708 ~l~e~~~~~~Vl~----~L~~~l~------~~KnpKv~~~~l~~L~~li~~fG~~~-------l~~k~li~~l~~~gL~- 769 (2013)
..+...+++.+++ .+...+. .+.+|+.+..++..|..+-+...... -.+..+++++..+ +.
T Consensus 423 d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~l-l~s 501 (980)
T 3ibv_A 423 DTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALV-TTS 501 (980)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHH-HHS
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHH-HhC
Confidence 7778888888877 4433321 23569999999988877665332111 1123466666554 44
Q ss_pred ----CCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 770 ----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 770 ----~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
+.+|.||..+..+++..+.|+... .+.-|.
T Consensus 502 ~i~~~~hp~V~~~~~~~l~rys~~~~~~-----~~~l~~----------------------------------------- 535 (980)
T 3ibv_A 502 QVCRHPHPLVQLLYMEILVRYASFFDYE-----SAAIPA----------------------------------------- 535 (980)
T ss_dssp STTTCCCHHHHHHHHHHHHHTGGGGGTC-----CTTHHH-----------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhcC-----chhHHH-----------------------------------------
Confidence 788999999999999998876521 000011
Q ss_pred CCcccccccchHHHH--hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc----hh-----------
Q 000159 846 PREDISGKFTPTLVK--SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD----SN----------- 908 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~--~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D----sN----------- 908 (2013)
+...|+. ++.+.+-++|..|.-.+..+++.+.+.+.|. ..+|+..|...|.- .+
T Consensus 536 --------~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~-~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 536 --------LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY-TESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp --------HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS-HHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred --------HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 1223444 5566677788888899999999887777765 47888888776641 00
Q ss_pred ------HHHHHHHHHHHHHHHHHhCh---hhHhhhhhHHHHHHHHhC----CCc----HH-HHHHHHHHHHHHHHhcC--
Q 000159 909 ------KNLVMATLITLGAVASAMGP---AVEKSSKGVLSDILKCLG----DNK----KH-MRECTLTVLDAWLAAVH-- 968 (2013)
Q Consensus 909 ------~~V~~~Al~~l~~La~alg~---~~~~~~~~llp~ll~~L~----D~k----~~-Vr~aa~~aL~~i~~~~g-- 968 (2013)
..=...-.+++|.|+.+++. .-..|+..++++++..+. ..+ .. -....+.+++.+.+-..
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc
Confidence 11234456788888888763 334678888888776553 211 11 12234555566665431
Q ss_pred ----------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc-CC-CChHHHHHHHHHH
Q 000159 969 ----------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TD-KSSDVRKAAEACI 1036 (2013)
Q Consensus 969 ----------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D-~~~dVR~aA~~~L 1036 (2013)
+..+++.+...|..-..+..+|..++..+.+.+..++. ++..++++++..| .+ ...+.. ..-..+
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~--~~~p~lp~~i~~ll~~~~~~e~~-~fL~l~ 763 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP--DMLPKVPQLISILLNSIDMNELV-DVLSFI 763 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH--HHTTTHHHHHHHHHHHCCTTTHH-HHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHHhcCCHHHHH-HHHHHH
Confidence 11233334444542112477888899888888876643 2444455544432 22 122222 233466
Q ss_pred HHHHHHcChhHHHHHhccC
Q 000159 1037 VEILRAGGQETIEKNLKDI 1055 (2013)
Q Consensus 1037 ~~l~~~~G~~~~~~~l~~L 1055 (2013)
+.++..+|.+ +.+.++.|
T Consensus 764 ~qli~~f~~~-~~~~l~~l 781 (980)
T 3ibv_A 764 SQLIHIYKDN-MMEITNRM 781 (980)
T ss_dssp HHHHHHTTTT-SHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHH
Confidence 6777777877 45554433
No 61
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.08 E-value=0.00012 Score=97.04 Aligned_cols=390 Identities=14% Similarity=0.096 Sum_probs=222.4
Q ss_pred HHHHhhhcC---CCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh
Q 000159 604 ADTVGQLKS---AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (2013)
Q Consensus 604 ~~l~~~L~s---~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (2013)
.++-+.|.+ .+-..|..++..+.-+.-.+.+.....-.+++. +..+|+.....+.-.+..++ .-...
T Consensus 38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl------~~s~~~~~Krl~YL~l~~~~----~~~~e 107 (621)
T 2vgl_A 38 ANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNL------LSSNRYTEKQIGYLFISVLV----NSNSE 107 (621)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHG------GGCSCHHHHHHHHHHHHHSC----CCCHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHH------hcCCCHHHHHHHHHHHHHHc----cCCcH
Confidence 456667764 377889999998876654433332222233443 34566666655554444333 22233
Q ss_pred hHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChhHHHHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCCCCCChh
Q 000159 681 CVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (2013)
Q Consensus 681 ~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~~~l~~k 757 (2013)
.+-.++..+..-+.|+ -+|..|..+|..+....-.+.+.+.+.+.+. .+.+|-||..++..+..+..... +.+...
T Consensus 108 ~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~ 186 (621)
T 2vgl_A 108 LIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMG 186 (621)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCch
Confidence 4555566666556663 4677777777766543223344444555532 68999999999999999998543 333223
Q ss_pred hHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCC-------CCCCCC------
Q 000159 758 DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF-------EGTVVP------ 824 (2013)
Q Consensus 758 ~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~-------~~~p~p------ 824 (2013)
.+++.+..+ |.+.|+.|+.+|..++.++...-+..+. .+.|.....+..-+..... .+-+.|
T Consensus 187 ~~~~~l~~l-L~d~d~~V~~~a~~~l~~i~~~~~~~~~----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 187 DWTSRVVHL-LNDQHLGVVTAATSLITTLAQKNPEEFK----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp SCHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHCHHHHT----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred hHHHHHHHH-hCCCCccHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 688888888 9999999999999999998765443222 2233333333332211000 000000
Q ss_pred cccccCccccCCCCCCCCCCCCC---cccccccc---hHHHHhcCCC----Ch-------HHHHHHHHHHHHHHHhcccc
Q 000159 825 KKTVRASESTSSVSSGGSDGLPR---EDISGKFT---PTLVKSLESP----DW-------KVRLESIEAVNKILEEANKR 887 (2013)
Q Consensus 825 ~R~~r~~~~~~s~~~~~~d~lpr---~dIs~~L~---~~ll~~l~d~----~W-------k~R~eale~l~~il~~a~~~ 887 (2013)
.+.++ .+.+ .+....+. ..++..+.+. .- -+-.|++. .++.
T Consensus 262 l~ll~--------------~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~---~i~~----- 319 (621)
T 2vgl_A 262 LRLLQ--------------CYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS---LIIH----- 319 (621)
T ss_dssp HHHGG--------------GSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHH---HHHH-----
T ss_pred HHHHH--------------HhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHH---HHHh-----
Confidence 00000 0000 01111111 1122221111 11 22222222 2221
Q ss_pred CCCC--ChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHH
Q 000159 888 IQPA--GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 888 I~~~--~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~ 964 (2013)
+.+. .....+..|...|.+++.+++..|+..+..|+..-+. ..++......++.+|. |....||..+.+.|..++
T Consensus 320 l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 320 HDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 1121 1234566777777778889999999999988755421 1344556778888898 999999999988888888
Q ss_pred HhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000159 965 AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2013)
Q Consensus 965 ~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L~ 1037 (2013)
..-.++.++..+...+.+. +.+.|.+++.++..+...++. +....+..++..+.+....|...+...+.
T Consensus 398 ~~~Nv~~Iv~eL~~yl~~~--d~~~~~~~v~~I~~la~k~~~--~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~ 466 (621)
T 2vgl_A 398 DRSNAQQIVAEMLSYLETA--DYSIREEIVLKVAILAEKYAV--DYTWYVDTILNLIRIAGDYVSEEVWYRVI 466 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHGGGSCSHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 7767788888888888754 478888888888776555433 23334444555555444444444443333
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.07 E-value=2.2e-05 Score=88.63 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=136.5
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-h
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-S 364 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~ 364 (2013)
+.+...+.+.++..|.+|+..|..+.....-....+ ...++.|.+.+.+.+..++..|+.+|+.|+.+-...-... -
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 356677899999999999999999884321000000 1357788888998899999999999999985322111111 2
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~-----l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
...+|.|+..+.+....++..+..+|..+....... -..+++.|...+++.++.+|..++..|..+....+.. .
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~ 173 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-K 173 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-H
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH-H
Confidence 357899999999999999999999999887430000 0235788889999999999999999999877643322 1
Q ss_pred HHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 440 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 440 ~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
... -...++.+..++.+.+++||..|..+|..+.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 111 2357899999999999999999999998764
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.00 E-value=4.1e-05 Score=88.94 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=136.8
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh-
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS- 364 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~- 364 (2013)
+.|++.+.+.+...|..|+..|..++....-....+ ..+++.|.+.+.+.+..+...|+.+|+.|+.+-...-...+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 478889999999999999999987653200000000 13567888889988899999999999999864322111222
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000159 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2013)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l-------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2013)
...+|.|+..+.+....++..+..+|..+... ... ..+++.|...+++.++.+|..++..|..+.... ..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 24899999999999999999999999888653 111 136788889999999999999999998865433 22
Q ss_pred HHHHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 438 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 438 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
..... -..++|.++.++.+.+++||..|..+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 21111 2567899999999999999999999999886
No 64
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.96 E-value=0.00047 Score=73.40 Aligned_cols=199 Identities=20% Similarity=0.301 Sum_probs=145.7
Q ss_pred hhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH
Q 000159 291 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (2013)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (2013)
..-+.+.-|..++.|+.-+-.++.. -+.-|..++..|.-.+. +.-+..-.+-.+++|.+|+.=. ..++.++|
T Consensus 38 I~~LDDDlwtV~kNAl~vi~~i~~~---~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P----e~v~~vVp 110 (253)
T 2db0_A 38 IELLDDDLWTVVKNAISIIMVIAKT---REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP----ELVKSMIP 110 (253)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHH
T ss_pred HHHhccHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----HHHHhhHH
Confidence 3446889999999999999888753 12346666776666665 6667676666788888775321 35788999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2013)
.++..+.-..+.++-...-+|..++..+...+..++.+|..-+.+||-.=|..+++|+..+=.++ .+++..++|-
T Consensus 111 ~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-----~~yv~PfLpr 185 (253)
T 2db0_A 111 VLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-----FKYVNPFLPR 185 (253)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-----HHHHGGGHHH
T ss_pred HHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-----ccccCcchHH
Confidence 99999977788888888899999998744446778899998899999999999999987643322 2456778899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCc--hhHHHHHhhcc---HHHHHHHHHHHh
Q 000159 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGM--RPLERSIEKLD---DVRRNKLSEMIA 501 (2013)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge--~~~~~~l~~Ld---~~~~kki~e~~~ 501 (2013)
+..+|.|.|.-||..|.++|+.++..-.. +.+..-+..++ +.-++++++.+.
T Consensus 186 L~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 186 IINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp HHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred HHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999999988754321 12233333343 334556665543
No 65
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.94 E-value=0.025 Score=78.58 Aligned_cols=617 Identities=11% Similarity=0.064 Sum_probs=311.9
Q ss_pred hhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-hhh---hHHH
Q 000159 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-AVD---VFLD 131 (2013)
Q Consensus 56 ~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~~-~~~---~v~~ 131 (2013)
++..+...+|+.+..++|+|+..|+.-...+.-- ...+++.+. ++++ .+.+|+.|.+|+..++... .++ .+++
T Consensus 197 iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~-~~~ll~~l~-~~L~-~~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 197 MMLAYSNAKNYGTVGLCLQVYAQWVSWININLIV-NEPCMNLLY-SFLQ-IEELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHH-CHHHHHHHH-HHTT-SHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhh-cchHHHHHH-HHcC-ChHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 3344444578899999999999999866442111 135666655 5564 5899999999999888652 222 2222
Q ss_pred HH--HHHh---h--cCChhhHHHHHHHH---HHHHHHh--CCCC----------cChhHHHHhhhhhhcCCChHHHHHHH
Q 000159 132 VM--EKAI---K--NKVAKAVVPAIDVM---FQALSEF--GAKI----------IPPKRILKMLPELFDHQDQNVRASSK 189 (2013)
Q Consensus 132 ~L--~~~~---~--~KnpKv~~~~l~~L---~~~l~~f--G~~~----------i~~k~il~~l~~ll~~~d~~VR~~a~ 189 (2013)
.| ...+ . +..+.........+ .+.+... .... -.+..+++.+..+++|.+..|=..+.
T Consensus 274 ~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~ 353 (980)
T 3ibv_A 274 ILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVF 353 (980)
T ss_dssp HHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTH
T ss_pred HHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 22 1111 1 23333322111111 1111111 1110 11356889999999999988877766
Q ss_pred HHHHHHHHhh---CC-chhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCC
Q 000159 190 GLTLELCRWI---GK-DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTAD 265 (2013)
Q Consensus 190 ~l~~ely~~l---G~-~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~g~~~~~~~~~~ 265 (2013)
.+...+...+ .. ..+. ...++...+-++..+.+.. .. .+ ...
T Consensus 354 ~Fw~~~l~~~~~~~~~~~~~----~~~~~~l~~Ll~~li~k~~------------yp--------~d---~~~------- 399 (980)
T 3ibv_A 354 PFLSDLLVSLRKESSSKELS----ASLKEFLKSLLEAIIKKMK------------YD--------ES---QEW------- 399 (980)
T ss_dssp HHHHHHHHHHHHHTTSCCCC----HHHHHHHHHHHHHHHHTTS------------CC--------TT---CCC-------
T ss_pred HHHHHHHHHHHhcccccccc----HHHHHHHHHHHHHHHHHcc------------CC--------Cc---ccc-------
Confidence 6643322221 10 0000 0111222222233333221 00 00 000
Q ss_pred CCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHhc---cc
Q 000159 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT-----EVCRTLKKLIT---DV 337 (2013)
Q Consensus 266 ~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~-----~l~~~L~k~l~---D~ 337 (2013)
+.+.| . | | .++|.+ .+.+...+..+...+. +..+. -+...+...+. ..
T Consensus 400 -~~~~d---~-e--d------~~~F~e------~Rk~l~~l~d~~~~l~-----~~~~l~~~~~~i~~~l~~~l~~~~~~ 455 (980)
T 3ibv_A 400 -DDDPD---S-E--E------EAEFQE------MRKKLKIFQDTINSID-----SSLFSSYMYSAITSSLSTAATLSPEN 455 (980)
T ss_dssp -CCCSS---S-S--T------HHHHHH------HHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred -ccccc---h-h--H------HHHHHH------HHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 00000 0 0 0 134422 3333333333333322 11122 23334444442 34
Q ss_pred CHHHHHHHHHHHHHHHHHhhhc------chhhhHhHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHh---cCCChHh
Q 000159 338 NIAVAVEAIQAIGNLARGLRTH------FSGSSRFLLPVLLEKLK-----EKKPTVAESLTQTLQAMHKA---GCLNLVD 403 (2013)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~------f~~~~~~llp~LL~klk-----dkk~~V~~aa~~aL~ai~~~---~~~~l~~ 403 (2013)
+=..+..|+-+++.++++++.. ..++...+++-|...+. +..+.|+..+..++...... ....+..
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~ 535 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPA 535 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHH
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 4567888999999999998752 22455566666665554 78899999888887664332 2344677
Q ss_pred HHHHHHH--HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCC---------------------CHH
Q 000159 404 VVEDVKT--SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG---------------------TPE 460 (2013)
Q Consensus 404 il~~l~~--~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds---------------------~~~ 460 (2013)
+++.++. ++.+.++.||..++..+.++.+.+.+. +.+++..++..+..++.-. ..+
T Consensus 536 ~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (980)
T 3ibv_A 536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFN 614 (980)
T ss_dssp HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHH
T ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCch
Confidence 8888888 888999999999999999999887653 4455666666666655411 112
Q ss_pred HHHHHHHHHHHHHHHhCc--hhHHHHHhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccc
Q 000159 461 VRDAAFSVLAAIAKSVGM--RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (2013)
Q Consensus 461 VR~aA~~al~~l~~~~Ge--~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 538 (2013)
-+-.-++++|.+....+. +....++..|-+-...+++.++....... . ..++. + ..=..-+...+
T Consensus 615 ~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~---~--~~~~i---~--~~i~al~~lak--- 681 (980)
T 3ibv_A 615 SQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL---E--NIISV---Y--CSLMAIGNFAK--- 681 (980)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-----C--HHHHH---H--HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc---c--HHHHH---H--HHHHHHHHHhc---
Confidence 355578888888888763 23445666655555556666654310000 0 00000 0 00000000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhc--CCCHH
Q 000159 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK--SAVWK 616 (2013)
Q Consensus 539 ~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~S~ee~e~~~~~~l~~~l~~~L~--s~~Wk 616 (2013)
|-+.. + . .+ .+ -.+.....+ +.+...|. .++..
T Consensus 682 -----gf~~~-------------~-----------~-----~~---~p---~~~~f~~~~-----~~il~~l~~~~~~~~ 716 (980)
T 3ibv_A 682 -----GFPAR-------------G-----------S-----EE---VA---WLASFNKAS-----DEIFLILDRMGFNED 716 (980)
T ss_dssp -----TSCSC-------------C-----------------CC---CS---HHHHHHHHH-----HHHHHHHHHSCCSHH
T ss_pred -----cCCcc-------------c-----------C-----CC---Cc---HHHHHHHHH-----HHHHHHHHhcCCcHH
Confidence 00000 0 0 00 01 112222211 22323333 46788
Q ss_pred HHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcC
Q 000159 617 ERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (2013)
Q Consensus 617 ~Rl~ale~L~~~v~~~~-~~~~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD 695 (2013)
.|.++..-+..++...+ ...+..+.++..|... +. ..-+...|.++..++..++.-....+..+++.++.++..
T Consensus 717 irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~--~~---~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~ 791 (980)
T 3ibv_A 717 IRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS--ID---MNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFS 791 (980)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH--CC---TTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc--CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887776532 2223344444443211 11 122456778888888877654555666777777776532
Q ss_pred h-----------h----hhHHHHHHHHHHHhhh------------ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHH
Q 000159 696 I-----------K----TRAHAMKCLTTFSEAV------------GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (2013)
Q Consensus 696 ~-----------K----~r~~a~e~L~~l~e~~------------~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~ 748 (2013)
. + ++..-...|..+..+. ..+.++..++.++....++-++.-|+..|.+++..
T Consensus 792 ~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 792 SLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSL 871 (980)
T ss_dssp HTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 1 1 2222223334443321 12345666666655567888999999999999999
Q ss_pred hCCCC-CC------hhhHHHHHHhc----CCCCCcH---hHHHHHHHHHHHHHHhhChhHHhhh
Q 000159 749 FGVSH-LK------LKDLIDFCKDT----GLQSSAA---ATRNATIKLLGALHKFVGPDIKGFL 798 (2013)
Q Consensus 749 fG~~~-l~------~k~li~~l~~~----gL~~~n~---~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2013)
+|... ++ ++ +++.+-.. ++.-.|+ .|=.....++..+|...|+.+..||
T Consensus 872 ~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l 934 (980)
T 3ibv_A 872 WGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYL 934 (980)
T ss_dssp -------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 97432 21 23 44433221 1221222 3566667788888888888777776
No 66
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.85 E-value=0.00015 Score=83.83 Aligned_cols=184 Identities=20% Similarity=0.172 Sum_probs=136.6
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh-hhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 365 (2013)
.+.+.+.+.++..|..|+..|..++....-....+ ..+++.|.+.+.+.+..+...|+.+|+.|+..-...-.. .-.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 85 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 85 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 56777888889999999999999885321000000 136778888899888999999999999998542111111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
..+|.++..+++....++..+..+|..+... .... ..+++.|...+++.++.+|..++..|..+....+ ...
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~ 163 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAI 163 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHH
Confidence 5799999999999999999999999988743 1111 1367888899999999999999999998755332 211
Q ss_pred HH-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000159 440 LK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 440 ~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~ 474 (2013)
.. .-..++|.++.++.+.+++||..|..+|+.+..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 11 125588999999999999999999999988874
No 67
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.84 E-value=0.064 Score=74.62 Aligned_cols=198 Identities=11% Similarity=0.058 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHhhhc-chhhhHhHHHHHHHHh
Q 000159 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKL 375 (2013)
Q Consensus 299 WkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D--~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp~LL~kl 375 (2013)
|+.=++.|..+..+... .-..-++..|.+.+.+ .+=..+..++-|+|.++.++..+ ..+++..++|.|+..+
T Consensus 430 f~~~Rd~L~~l~~l~~~-----~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~ 504 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVI-----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHH-----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh
Confidence 44434666666554321 1122344555555553 56778899999999999998765 6689999999999887
Q ss_pred c-----cCcHHHHHHHHHHHHHHHHh---cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------H
Q 000159 376 K-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV-------L 440 (2013)
Q Consensus 376 k-----dkk~~V~~aa~~aL~ai~~~---~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l-------~ 440 (2013)
. |.|..|++.+.-++...... ....+..++..+..++...+|.+...++..+..+.+.+..... .
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 5 56777777766666543222 1123567788888888888999999999999988877664322 2
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchh-HHHHHhhccHHHHHHHHHHHh
Q 000159 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
+++..++..+..++++-.+.-+....++++.+....+... ...++..|-+....++++..+
T Consensus 585 p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~ 646 (1023)
T 4hat_C 585 PFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVE 646 (1023)
T ss_dssp CHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 4678888888898888999999999999999999998654 556777666555555555543
No 68
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.84 E-value=0.00041 Score=79.99 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=139.7
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh-hhH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-pki~~~~-~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 365 (2013)
.+...+.+.+...|..++..|..+... +.....- -...++.|...+.+.+..++..|+.+|+.|+..-...... .-.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 466667888899999999999998743 2110000 0135778888888889999999999999998532211111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
..+|.|++.+++..+.++..+..+|..+... .... ..+++.+...+.+.++.+|..++..|..+.... +...
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 205 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAI 205 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHH
Confidence 5899999999999999999999999988653 1000 236788889999999999999999998876532 2222
Q ss_pred HHh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000159 440 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2013)
Q Consensus 440 ~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2013)
... -..+++.+...+.+.+++||..|..+|+.+....+..
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 111 1457899999999999999999999999999876654
No 69
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.83 E-value=5.8e-05 Score=85.11 Aligned_cols=185 Identities=17% Similarity=0.206 Sum_probs=132.6
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
..+-|...+.+.++.+|.+|+..|..+..........-.-...++.|...|.+.+..++..|+.+++.|+..-.......
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 34567788899999999999999999874211100000012577888899999999999999999999874321111122
Q ss_pred h-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCC
Q 000159 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2013)
Q Consensus 934 ~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2013)
. ...+|.++..|.+.+..+|..|..+|..+..... -..+++.+...|.+. ++.+|..++..|........
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCc
Confidence 1 2478999999999999999999999999874321 133678888888876 57889998888876654221
Q ss_pred CCC-C--hhhhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 1006 GFP-D--AAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 1006 ~~~-~--~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
... . ....+..+...+.+.+.+||+.|..+|..+.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 110 1 1235566888999999999999999987663
No 70
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.80 E-value=5.6e-05 Score=87.81 Aligned_cols=184 Identities=12% Similarity=0.097 Sum_probs=135.7
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcC-CCCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hH
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-pki~~~~~-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (2013)
.+...+.+.++..|..|+..|..+... +.....-. ...++.|...+.+.+..++..|+.+|+.|+..-....... -.
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 466778888899999999999998742 11100000 1267788888998899999999999999976433321222 23
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000159 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2013)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2013)
..+|.|+..+.+....|+..+..+|..+... .... ..+++.|...+++.++.+|..++..|..+.... +...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 5899999999999999999999999988753 1000 235788889999999999999999999876432 2222
Q ss_pred HHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000159 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 440 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~ 474 (2013)
.... ..+++.+..++.+.+++||..|..+|+.+..
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 2222 3488999999999999999999999987643
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.49 E-value=0.0018 Score=72.16 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=146.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
.++..+.|+|-.++..++..+++++..+++....-.+.++++.+...+.+.|-.|...|++|++.|.......=..| ..
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y-~K 115 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF-LK 115 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH-HH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH-HH
Confidence 56677899999999999999999998764444444468899999999999999999999999999998765554444 45
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2013)
++.++.....+++..++..+...++.+ +.+. ...++..+...+.++ +++++...+..+.+.......+..+..++.
T Consensus 116 l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~ 192 (265)
T 3b2a_A 116 AAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILD 192 (265)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 778888899999999999999999998 4444 577888888888655 689999999998876554444455677777
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 1016 PASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
-+-..|...++.+++-|-.++..+.
T Consensus 193 eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 193 EIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp THHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7888898889999999987776554
No 72
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.45 E-value=0.0013 Score=78.62 Aligned_cols=173 Identities=14% Similarity=0.112 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHH-HhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHHHHH
Q 000159 300 SERKDAVAELTKLASTKRIAPGDF--TEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEK 374 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~~~--~~l~~~L~k-~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~k 374 (2013)
.+|..|++.|..++...... .++ ...++.|.. .+.+.+..|+..|+.+|+.++..-. ....++ ...+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHH
Confidence 46788888888877432100 111 123456666 8888899999999999999986421 121221 2588999999
Q ss_pred hcc-CcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHH
Q 000159 375 LKE-KKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYV 447 (2013)
Q Consensus 375 lkd-kk~~V~~aa~~aL~ai~~~~~~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~ 447 (2013)
+.. ++..|+..+.-||..++.+..... ...++.|...|++.++.+|..++..|..+....+. ...... .-++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCH
Confidence 984 588999999999999886411111 13567788888999999999999999887765332 111111 4588
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 448 PICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
|.|+.+|.+.++.||+.|..+|+.+...
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999865
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.32 E-value=0.004 Score=69.45 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=140.3
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
+++.+.+.+++=+.-..|++.|..|+.+.-+.+++|..+..+|...+++.|-.+...|+..++.+ ......+.+
T Consensus 78 d~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V 151 (265)
T 3b2a_A 78 DVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLV 151 (265)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHH
Confidence 35666677787777788999999998776688889999999999999999999999888888776 233445667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh
Q 000159 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (2013)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~ai~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 445 (2013)
+..++..++.++..|..++..++..+..++ .-.+..++..|..-+++++|.++.-++..+.+++...-...+...+..
T Consensus 152 ~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~ 231 (265)
T 3b2a_A 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK 231 (265)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence 777777778999999999999999998761 123788999999999999999999999999998875433333333344
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 000159 446 YVPICMECL-NDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 446 l~p~l~k~l-~Ds~~~VR~aA~~al~~l~ 473 (2013)
+...+.... -...|.+|+.|+.....+-
T Consensus 232 ~~~~v~~l~~~~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 232 ISRIVDGLVYREGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp HHHHHHHGGGCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 444555555 6889999999987766554
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.032 Score=59.68 Aligned_cols=189 Identities=14% Similarity=0.155 Sum_probs=136.1
Q ss_pred hhHHHHHhhcccCHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHHhhcCc--chHHHHHHHhhHHHHHHHHHhcCCC
Q 000159 1171 FREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKS--NTTCLLKVLEFLPELFDTLRDEGYS 1248 (2013)
Q Consensus 1171 ~~~~l~~~lfs~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dt--N~~vl~k~Le~l~~l~~~l~~~~y~ 1248 (2013)
|=++++..|-..-|.-+..|+..+......-++..-+-++-+|-++ |=.++ -|+-.-+.|-.+ ...
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~--~ksEaIpltqeIa~a~G~l-------a~i--- 100 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLL--KKSEAIPLTQEIAKAFGQM-------AKE--- 100 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH--HHCCSHHHHHHHHHHHHHH-------HHH---
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH--hhcccCchHHHHHHHHhHH-------HHh---
Confidence 4456777777777999999999998887776666555555444332 44554 334444444433 332
Q ss_pred CCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCcc--ccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCc
Q 000159 1249 LTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT--KTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI 1326 (2013)
Q Consensus 1249 l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v~p~s--kvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~ 1326 (2013)
........+|.|+.-.--..+++|-.+.-.++.|...||-. .+|.=++.-+.|||---|..+|++|+.+ |-+.
T Consensus 101 -~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~al----Gen~ 175 (253)
T 2db0_A 101 -KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAM----GENS 175 (253)
T ss_dssp -CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTT
T ss_pred -CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----hccC
Confidence 34567889999987663334558889999999999999865 5777777778899988888888888764 4432
Q ss_pred ccccc-hHHHHHHhhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCHHHHHhHHHHHHhh
Q 000159 1327 SGQLK-SLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1388 (2013)
Q Consensus 1327 ~~~~k-~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~Ls~~~~s~l~er~kr~ 1388 (2013)
...-- -|+.+-.++.|+|--||.+|..+|+ .+..+++|.+-.+.+++++.
T Consensus 176 ~~yv~PfLprL~aLL~D~deiVRaSaVEtL~------------~lA~~npklRkii~~kl~e~ 226 (253)
T 2db0_A 176 FKYVNPFLPRIINLLHDGDEIVRASAVEALV------------HLATLNDKLRKVVIKRLEEL 226 (253)
T ss_dssp HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHH------------HHHTSCHHHHHHHHHHHHHC
T ss_pred ccccCcchHHHHHHHcCcchhhhHHHHHHHH------------HHHHcCHHHHHHHHHHHHHh
Confidence 11112 3688899999999999999999999 55788899888888888874
No 75
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.89 E-value=2 Score=59.36 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc----ccCHHHHHHHHHHHH--HHHHHhhhcchhhhHhHHHHHHH
Q 000159 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT----DVNIAVAVEAIQAIG--NLARGLRTHFSGSSRFLLPVLLE 373 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~----D~N~~V~~~A~~~l~--~La~~L~~~f~~~~~~llp~LL~ 373 (2013)
+.|+.|=..|....+ ..++.|..+++.+.+.+. +.+..-...|+-+|. .+...+..++ .+...+++.|+.
T Consensus 148 ~VR~~AQ~~L~~~~~---~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~-~~~~~~~~ali~ 223 (997)
T 1vsy_5 148 DIYKPAQGTLVHCMK---QLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDY-KDIGRLIFLLIE 223 (997)
T ss_dssp HHHHHHHHHHHHHHT---TBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcCh-HHHHHHHHHHHH
Confidence 478888777777653 345667777766666553 556667788877765 4555555444 568889999999
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCC--------------------------------------hHhHHHHH----HHH
Q 000159 374 KLKEKKPTVAESLTQTLQAMHKAGCLN--------------------------------------LVDVVEDV----KTS 411 (2013)
Q Consensus 374 klkdkk~~V~~aa~~aL~ai~~~~~~~--------------------------------------l~~il~~l----~~~ 411 (2013)
.....|+.|+.-+..+...+......+ ..+.+..| +..
T Consensus 224 ~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~ 303 (997)
T 1vsy_5 224 CCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLLVDLQDKLLDK 303 (997)
T ss_dssp TCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998889988888777777666541100 00111112 222
Q ss_pred h-hcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 412 V-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 412 l-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
+ .+.. |....-++.+|..++.+... ..-++++..+.+.+.|.+|.+|..|..++..++..+-.
T Consensus 304 ~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~ 369 (997)
T 1vsy_5 304 LDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIIS 369 (997)
T ss_dssp HHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2 1233 66666666665444322211 11256778899999999999999999999888766543
No 76
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.88 E-value=0.0054 Score=73.26 Aligned_cols=169 Identities=13% Similarity=0.124 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHh-cccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHHHHHH
Q 000159 868 KVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDIL 942 (2013)
Q Consensus 868 k~R~eale~l~~il~~a~--~~I~~~~~~eL~~~L~~-rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp~ll 942 (2013)
..|..|++.|..++.... ..+.. .| .++.|.. .|...+..|+..|+.+|+.++.. .+.....+ ...+|.|+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~--~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQ--LS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH--TT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHH--cC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHH
Confidence 468889999998885210 11110 13 3466777 88889999999999999999853 23333332 25889999
Q ss_pred HHhC-CCcHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC-CCh--h
Q 000159 943 KCLG-DNKKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA--A 1011 (2013)
Q Consensus 943 ~~L~-D~k~~Vr~aa~~aL~~i~~~~g--l-----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~-~~~--~ 1011 (2013)
..|. +.+..+|..|..+|..++.... . ...+|.+...|.++ ++.+|..++..|.......... ..+ .
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 9998 4588999999999999886432 1 23567788888876 5788988887776654432111 011 2
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000159 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2013)
Q Consensus 1012 ~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~ 1042 (2013)
..+++++..|.+.+.+||..|..+|..+...
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 4667799999999999999999999988866
No 77
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.88 E-value=0.57 Score=60.76 Aligned_cols=373 Identities=12% Similarity=0.050 Sum_probs=202.8
Q ss_pred hhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh-H-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hhh----
Q 000159 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-A-KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---EAV---- 126 (2013)
Q Consensus 56 ~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~-~-~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~---~~~---- 126 (2013)
.+-.++...|..+|..|..+|..+...... .... + ...+|.||+-.-...+.+++.|..+|..+... +.-
T Consensus 52 ~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 52 EVIAMLGFRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 344567788999999999888766543222 1111 1 24678899874446899999999998888753 111
Q ss_pred -hhHHHHHHHHhhc-CChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhh------------------cCCChHHHH
Q 000159 127 -DVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF------------------DHQDQNVRA 186 (2013)
Q Consensus 127 -~~v~~~L~~~~~~-KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll------------------~~~d~~VR~ 186 (2013)
...+..|+..+.+ ..+.++..+..+|..+-..--.+..=++.-++.|..++ ...|..|+.
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~ 210 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLT 210 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHH
Confidence 2346667777765 56777777766666543311111100122344444443 233679999
Q ss_pred HHHHHHHHHHHhhCCchhhHHHh--hhChHHHHHHHHHHHHhcCCCCCCC----ccchhhhhHhhhhhccccCCCCCCCC
Q 000159 187 SSKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPT----RKIRAEQDKELGQELISEDVGPGPSE 260 (2013)
Q Consensus 187 ~a~~l~~ely~~lG~~~l~~~l~--~~Lk~~q~keLe~~f~k~~~~~~P~----R~~rs~~~~~~~~ea~~~~~g~~~~~ 260 (2013)
.|..++..|-..- ++ .+..+. ..+-+..+.-|....++.....+-. ..+|--.. ....+.+
T Consensus 211 nAa~~L~NLs~~~-~~-~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~-~~~~e~~---------- 277 (584)
T 3l6x_A 211 NTAGCLRNVSSER-SE-ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY-QVHREIP---------- 277 (584)
T ss_dssp HHHHHHHHHTSSC-HH-HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT-THHHHST----------
T ss_pred HHHHHHHHHhcCC-HH-HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc-ccccccc----------
Confidence 9988887775321 11 112221 2333333444433322211000000 00000000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhc-ccC
Q 000159 261 ESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLIT-DVN 338 (2013)
Q Consensus 261 ~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~pk-i~~~~~~~l~~~L~k~l~-D~N 338 (2013)
..+.| .+. .+ . +........++ +..---..+++.|...+. ..+
T Consensus 278 --------~~~~~--~~~------~~-~------------------~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~ 322 (584)
T 3l6x_A 278 --------QAERY--QEA------AP-N------------------VANNTGTSPARGYELLFQPEVVRIYISLLKESKT 322 (584)
T ss_dssp --------TCCC-----------------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred --------chhhh--hhh------cc-c------------------ccccccccCchhHHHHhcccHHHHHHHHHccCCC
Confidence 00001 000 00 0 00000111111 100001355677777886 457
Q ss_pred HHHHHHHHHHHHHHHHHhh---hcchhhh--HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH-----hHHHHH
Q 000159 339 IAVAVEAIQAIGNLARGLR---THFSGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-----DVVEDV 408 (2013)
Q Consensus 339 ~~V~~~A~~~l~~La~~L~---~~f~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~-----~il~~l 408 (2013)
..+...|+.+|..|+.+-. ..+...+ ...+|.|++.+......|+.++..+|..+... .... .+++.|
T Consensus 323 ~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~~I~~g~ip~L 400 (584)
T 3l6x_A 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD--ARNKELIGKHAIPNL 400 (584)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hhHHHHHHhCCHHHH
Confidence 8899999999999986421 1222222 36699999999999999999999999999875 2222 346777
Q ss_pred HHHhhcC--------ChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhC
Q 000159 409 KTSVKNK--------VPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 409 ~~~l~~K--------np~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds--~~~VR~aA~~al~~l~~~~G 477 (2013)
..-|.+. +..+...++..|..++...+.. .... -...+|.|+.++.+. .+.++++|..+|..+ +.
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl---~~ 476 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI---WG 476 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH---HT
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH---Hc
Confidence 7777654 3467778888887776543321 1111 145789999999876 788888887777655 45
Q ss_pred chhHHH
Q 000159 478 MRPLER 483 (2013)
Q Consensus 478 e~~~~~ 483 (2013)
.+.+..
T Consensus 477 ~~elr~ 482 (584)
T 3l6x_A 477 YKELRK 482 (584)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 554443
No 78
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.86 E-value=0.004 Score=76.87 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=101.8
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000159 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2013)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2013)
+.+...+-+.+|..|-.|.-.|+.+++......+-. ...|. -.|++++..||
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLA-------------- 228 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILV-------------- 228 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHH--------------
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHH--------------
Confidence 456677899999999999999999884211111100 22232 44555555544
Q ss_pred HHHHHHHhcc-----CcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000159 368 LPVLLEKLKE-----KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2013)
Q Consensus 368 lp~LL~klkd-----kk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2013)
|++|+| -...|||.+.++|.++ .+-... -+++..+...+.+..|++|.+.+.-|..+ ...+..
T Consensus 229 ----LDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~- 296 (800)
T 3oc3_A 229 ----TDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED- 296 (800)
T ss_dssp ----HBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-
T ss_pred ----hccccccccCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-
Confidence 344444 2457999999999999 661112 35666666667889999999998887765 122212
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
++.+++++..+|.|.+-+||.+|+++|.-+.
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 6889999999999999999999999998776
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.79 E-value=0.00016 Score=75.57 Aligned_cols=120 Identities=15% Similarity=0.075 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh
Q 000159 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (2013)
Q Consensus 324 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~ 403 (2013)
..-...|...++|.+..++..|+.+|+.+. . + . ++.|++.++|+.+.||..+..+|..+ .-..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~---~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~------~~~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG----D---E---A-FEPLLESLSNEDWRIRGAAAWIIGNF------QDER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS----S---T---T-HHHHHHGGGCSCHHHHHHHHHHHGGG------CSHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC----c---h---H-HHHHHHHHcCCCHHHHHHHHHHHHhc------CCHH
Confidence 344566777888888888888877776542 1 1 1 58899999999999999887776644 2256
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000159 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 404 il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~ 471 (2013)
.++.|...+++.+|.||..++..|..+- . +..++.|.+.+.|.++.||.+|..+|+.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIG---G--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHC---S--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---c--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7888889999999999999998887641 1 3457888999999999999999998864
No 80
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.75 E-value=4.5 Score=57.52 Aligned_cols=202 Identities=10% Similarity=0.018 Sum_probs=116.8
Q ss_pred ChHHHHHHHHHHHHHHHhccccC-CCCChhhHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHH
Q 000159 866 DWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (2013)
Q Consensus 866 ~Wk~R~eale~l~~il~~a~~~I-~~~~~~eL~~~L~~rL---~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~l 941 (2013)
.|..+......++.++....... .+.....++..|...+ ...+..++..++.+++.+..-+.. -..++..++..|
T Consensus 499 ~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~l 577 (1204)
T 3a6p_A 499 SFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHH
Confidence 57777666666666665431111 1222112333333332 345677888999999877755432 125677777777
Q ss_pred HHHhCC------------CcHHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCC-CChhhHHHHHHHHHHHhc
Q 000159 942 LKCLGD------------NKKHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAK-LGAEGRKDLFDWLSKQLT 1002 (2013)
Q Consensus 942 l~~L~D------------~k~~Vr~aa~~aL~~i~~~~g--l~~ll~----~l~~~L~~~k-~~p~~R~~~l~~L~~~l~ 1002 (2013)
+..+.+ ..+.||.+|..++..++..++ +-.+++ .+...+.... ....-+..+...+.-.-.
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~ 657 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISN 657 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHG
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhc
Confidence 877766 456899999999999999885 233333 3444444332 334455555555543311
Q ss_pred cCCCC---CC-hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHH--H-------HHHHHHHh
Q 000159 1003 GLSGF---PD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL--A-------LILERIKL 1069 (2013)
Q Consensus 1003 ~~~~~---~~-~~~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~--~-------~i~~~l~k 1069 (2013)
..+.. .. +..++.|++..+.+ ++++. +......|+..+|-+....+....++..+ . .+...+++
T Consensus 658 ~~~~~~~~~~~l~~ll~P~~~~w~~--~~~~~-~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r 734 (1204)
T 3a6p_A 658 QFKNYERQKVFLEELMAPVASIWLS--QDMHR-VLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKR 734 (1204)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHSC--HHHHH-HHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcc--HHHHH-hhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 12221 22 56678888887764 44555 34455788888887766555555554322 3 56667777
Q ss_pred cC
Q 000159 1070 NG 1071 (2013)
Q Consensus 1070 ~~ 1071 (2013)
.+
T Consensus 735 ~~ 736 (1204)
T 3a6p_A 735 TC 736 (1204)
T ss_dssp CC
T ss_pred hc
Confidence 53
No 81
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.51 E-value=0.31 Score=63.23 Aligned_cols=347 Identities=10% Similarity=0.059 Sum_probs=193.9
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhh
Q 000159 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV 713 (2013)
Q Consensus 638 ~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~ 713 (2013)
..+.++.+|. ..+..++..+...|..++..... .+..+ .-.||.||.-|.. ..++..|..+|..++...
T Consensus 49 ~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 49 ELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 3566777763 33456677777777766642111 11222 1257888887755 568899999999887521
Q ss_pred Chh--------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC-CC---ChhhHHHHHH--hcCC-----------
Q 000159 714 GPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HL---KLKDLIDFCK--DTGL----------- 768 (2013)
Q Consensus 714 ~~~--------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~-~l---~~k~li~~l~--~~gL----------- 768 (2013)
+.+ -.++.|+..+....++.++..+...|..+-..-... .+ -+..|+..+. ..|.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence 111 136667776654567777777665555543210000 00 1233444331 0111
Q ss_pred CCCcHhHHHHHHHHHHHHHHhhChhHHhhh---hhccHHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000159 769 QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2013)
Q Consensus 769 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L---~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2013)
...+..|+..|..+|..|... ++..+..+ +.+.+.++..|.....+....
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~-------------------------- 254 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSD-------------------------- 254 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCS--------------------------
T ss_pred ccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCcc--------------------------
Confidence 223579999999998887532 22222222 455667777776554332110
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHH-------------------------HhccccCCCCChhhHHHHH
Q 000159 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL-------------------------EEANKRIQPAGTGELFGGL 900 (2013)
Q Consensus 846 pr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il-------------------------~~a~~~I~~~~~~eL~~~L 900 (2013)
.+....++-.|..+. ....+.+..-.-...++.|
T Consensus 255 ---------------------~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~L 313 (584)
T 3l6x_A 255 ---------------------SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY 313 (584)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHH
Confidence 000001111111110 0011111110002456777
Q ss_pred Hhcccc-hhHHHHHHHHHHHHHHHHHhCh---hhHhhh--hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----
Q 000159 901 RGRLYD-SNKNLVMATLITLGAVASAMGP---AVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD---- 970 (2013)
Q Consensus 901 ~~rL~D-sN~~V~~~Al~~l~~La~alg~---~~~~~~--~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~---- 970 (2013)
...|.+ .+..+...|+.+|..|+..-++ .+...+ ...+|.|++.|......|+.+|..+|..+.......
T Consensus 314 l~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~ 393 (584)
T 3l6x_A 314 ISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIG 393 (584)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 777754 4788999999999999754322 222233 356999999999999999999999999998766533
Q ss_pred -hhHHHHHHHHhcCCC------ChhhHHHHHHHHHHHhccCCCC-CC--hhhhHHHHHhhcCCC--ChHHHHHHHHHHHH
Q 000159 971 -KMVPYVTTALTDAKL------GAEGRKDLFDWLSKQLTGLSGF-PD--AAHLLKPASIAMTDK--SSDVRKAAEACIVE 1038 (2013)
Q Consensus 971 -~ll~~l~~~L~~~k~------~p~~R~~~l~~L~~~l~~~~~~-~~--~~~ll~pl~~~L~D~--~~dVR~aA~~~L~~ 1038 (2013)
..+|.+...|.+... +.++...++..|...+...... .. -...+++|+.+|.+. ...++++|..+|..
T Consensus 394 ~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~n 473 (584)
T 3l6x_A 394 KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473 (584)
T ss_dssp HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 345667777765421 2345666776666554322111 11 124567788888775 78888888877765
Q ss_pred H
Q 000159 1039 I 1039 (2013)
Q Consensus 1039 l 1039 (2013)
+
T Consensus 474 l 474 (584)
T 3l6x_A 474 I 474 (584)
T ss_dssp H
T ss_pred H
Confidence 5
No 82
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.17 Score=66.89 Aligned_cols=364 Identities=12% Similarity=0.093 Sum_probs=197.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcc----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~----~~~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (2013)
+-+.+.+.+ -..|.-|.-.|.++....+... ...+.+.++|.. .....++.+++.|.++--. +..-.
T Consensus 299 ~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~------~~~~~~~~AvEgLaYLSl~-~~VKe 369 (778)
T 3opb_A 299 QLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISR------RIVPKVEMSVEALAYLSLK-ASVKI 369 (778)
T ss_dssp HHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTT------CCHHHHHHHHHHHHHHTTS-SHHHH
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHhCC-HHHHH
Confidence 334444444 2667777778877765532211 223455555532 1112267778877765431 11111
Q ss_pred h--hHHHHHHHHHhhhcChhhhHHHHHHHHHHHhhhC--h-----hHHHHHHHHHhhhCCChhHHH---------HHHHH
Q 000159 680 K--CVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG--P-----GFIFERLYKIMKDHKNPKVLS---------EGILW 741 (2013)
Q Consensus 680 ~--~~~~il~~LveKlgD~K~r~~a~e~L~~l~e~~~--~-----~~Vl~~L~~~l~~~KnpKv~~---------~~l~~ 741 (2013)
. .-..++..|++-+.+.........++..++.... + +.-+.+|.+++ +.+.|+... +...+
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A-~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX-XXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------------CCTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc-cccCcccCcccccccchHHHHHH
Confidence 1 1123566666666542223334444444443221 1 12344555544 222232221 11111
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCC
Q 000159 742 MVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 821 (2013)
Q Consensus 742 L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2013)
-...+-+. .+++.+..+ +.+.++.+|..|..++..|-.. +..+..+-. ++
T Consensus 449 ~~~~l~ea--------GvIp~Lv~L-l~S~s~~~re~A~~aL~nLS~d--~~~R~~lvq------------------qG- 498 (778)
T 3opb_A 449 NEKYILRT--------ELISFLKRE-MHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQ------------------QG- 498 (778)
T ss_dssp HHHHTTTT--------THHHHHHHH-GGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHH------------------TT-
T ss_pred HHHHHHHC--------cCHHHHHHH-HcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHH------------------CC-
Confidence 22222222 356666676 8888999999999998887522 222222200 00
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCCh---HHHHHHHHHHHHHHHhccccCC--CCChhhH
Q 000159 822 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW---KVRLESIEAVNKILEEANKRIQ--PAGTGEL 896 (2013)
Q Consensus 822 p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~W---k~R~eale~l~~il~~a~~~I~--~~~~~eL 896 (2013)
..+.|+..+.+... ..|..|...|..++...++.+. .+...+.
T Consensus 499 --------------------------------al~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~a 546 (778)
T 3opb_A 499 --------------------------------AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA 546 (778)
T ss_dssp --------------------------------HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTH
T ss_pred --------------------------------CHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccc
Confidence 01123333333321 3688999999999864443331 1111367
Q ss_pred HHHHHhccc-chhH-------------HHHHHHHHHHHHHHHHhC---hhhH-hhhh--hHHHHHHHHhCCCcHHHHHHH
Q 000159 897 FGGLRGRLY-DSNK-------------NLVMATLITLGAVASAMG---PAVE-KSSK--GVLSDILKCLGDNKKHMRECT 956 (2013)
Q Consensus 897 ~~~L~~rL~-DsN~-------------~V~~~Al~~l~~La~alg---~~~~-~~~~--~llp~ll~~L~D~k~~Vr~aa 956 (2013)
++.|...|. +... .-+..|+.++..||..-+ .+.. ..++ ..+|.+...|.+.+..||.+|
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA 626 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRST 626 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHH
Confidence 888888886 2221 226689999999997543 2332 3444 478999999999999999999
Q ss_pred HHHHHHHHHhcC-c-hhh-----------HHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC----CChhhhHHHHHh
Q 000159 957 LTVLDAWLAAVH-L-DKM-----------VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASI 1019 (2013)
Q Consensus 957 ~~aL~~i~~~~g-l-~~l-----------l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~ 1019 (2013)
..++..++.+.. + ..+ ++.+...+... +..+|..+...|+..-...+.. -.....+..++.
T Consensus 627 ~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~ 704 (778)
T 3opb_A 627 LELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQ 704 (778)
T ss_dssp HHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHH
Confidence 999999996542 2 233 44566666654 5788888886666432222210 111346667888
Q ss_pred hcCC--CChHHHHHHHHHHHHHHH
Q 000159 1020 AMTD--KSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 1020 ~L~D--~~~dVR~aA~~~L~~l~~ 1041 (2013)
.|.| .+.++|..+..++..+..
T Consensus 705 lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 705 VFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCHHHHHHHHHHHHHHHH
Confidence 8888 899999999999998886
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.29 E-value=0.066 Score=65.12 Aligned_cols=282 Identities=9% Similarity=0.047 Sum_probs=130.5
Q ss_pred CCCchhhHHHHHHHHHhhhcCh--hhhHHHHHHHHHHHhhhChh--HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhC
Q 000159 675 TKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (2013)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgD~--K~r~~a~e~L~~l~e~~~~~--~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG 750 (2013)
..|+...+..+.+.++.-+... .+|....-.+..+++. ..+ .+.+.+.+-+ +++||-+|.-++..|+.+...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDM-TGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHH-HSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhc-CCCcHhHHHHHHHHHhcCCCH--
Confidence 4676666667777777665543 4566666566655554 111 3566677775 799999999999999988631
Q ss_pred CCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHHHhhCCCCCCCCCcccccC
Q 000159 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (2013)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2013)
. =+..+...++.+ +.|.||.||.+|.-+...||....+-++.|++
T Consensus 135 --~-m~~~l~~~lk~~-L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~------------------------------- 179 (355)
T 3tjz_B 135 --T-MLQAIERYMKQA-IVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN------------------------------- 179 (355)
T ss_dssp --T-THHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHH-------------------------------
T ss_pred --H-HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-------------------------------
Confidence 1 146788888997 99999999999999988777544333333322
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhc-ccchhH
Q 000159 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNK 909 (2013)
Q Consensus 831 ~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~r-L~DsN~ 909 (2013)
++.+.+.|.|--+-..|+..+..+... . ...+..++..|... +. +.
T Consensus 180 --------------------------~l~~ll~d~n~~V~~~Al~lL~ei~~~--d---~~a~~kLv~~l~~~~l~--~~ 226 (355)
T 3tjz_B 180 --------------------------EAQEAASSDNIMVQYHALGLLYHVRKN--D---RLAVSKMISKFTRHGLK--SP 226 (355)
T ss_dssp --------------------------HHHHHTTCSSHHHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHSSCCS--CH
T ss_pred --------------------------HHHHHhcCCCccHHHHHHHHHHHHHhh--c---hHHHHHHHHHHhcCCCc--Ch
Confidence 222223334433334444444444321 0 00012233333221 11 12
Q ss_pred HHHHHHHHHHHHHHHHhChhh-HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCC
Q 000159 910 NLVMATLITLGAVASAMGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLG 986 (2013)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~-~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~ 986 (2013)
-....-++++.. +++.= ......++..+...|+.+...|.=.|..++..+-.... +...+..+...|.++ .
T Consensus 227 ~~q~~llr~l~~----~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~--d 300 (355)
T 3tjz_B 227 FAYCMMIRVASR----QLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSP--K 300 (355)
T ss_dssp HHHHHHHHHHTC----C-----------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSS--S
T ss_pred HHHHHHHHHHHH----hccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCC--C
Confidence 222222333222 22221 23345667777778888888888777788777644211 223344556667665 3
Q ss_pred hhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHH
Q 000159 987 AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (2013)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L 1036 (2013)
+.+|--++..|.......+. .+...-.-+..|+.|.|..++--|...|
T Consensus 301 ~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 AALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSSHHHHHHCC---------------------------------------
T ss_pred chHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 68899999888876654432 1223333488899999988877665443
No 84
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.21 E-value=0.15 Score=64.65 Aligned_cols=381 Identities=10% Similarity=0.037 Sum_probs=195.4
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhcC--hhhhHHHHHHHHHHHhhhC
Q 000159 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG 714 (2013)
Q Consensus 639 ~~~lv~~L~~~pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlgD--~K~r~~a~e~L~~l~e~~~ 714 (2013)
.+.++++|.. .+..++..+..++..++..... .+..+ .-.+|.|++-+.+ ..++..|..+|..++...+
T Consensus 4 l~~lv~~L~s------~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 4 IPKAVQYLSS------QDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHHHS------SCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHCC------CCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 4556777642 2345677778887776642211 12111 2357888887754 5678888889988875311
Q ss_pred h--hH-----HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCC--------CC--------C
Q 000159 715 P--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--------QS--------S 771 (2013)
Q Consensus 715 ~--~~-----Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL--------~~--------~ 771 (2013)
. .. .++.|++.+..+.++.++..++..|.++...-.....=+...++.+..+ + .+ .
T Consensus 77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~l-l~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADR-VIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHH-TTHHHHTCC---------CC
T ss_pred HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHH-HhccccccccCccchhcccc
Confidence 1 11 2556666664377899999999998888753110000011344555555 5 22 3
Q ss_pred cHhHHHHHHHHHHHHHHhhChhHHhhhh---hccHHHHHHHHHHHhhCCCCCCCC-----CcccccCccccCCCCCCCCC
Q 000159 772 AAATRNATIKLLGALHKFVGPDIKGFLA---DVKPALLSALDAEYEKNPFEGTVV-----PKKTVRASESTSSVSSGGSD 843 (2013)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~---~lkp~ll~~Le~ef~k~~~~~~p~-----p~R~~r~~~~~~s~~~~~~d 843 (2013)
+..|...|..+|..|... +..+..+- +.-|.+...+......-....... ..+.+-...... ...+.+
T Consensus 156 ~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~--~~~~~~ 231 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE--VPTRYR 231 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH--SCCHHH
T ss_pred cHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhcc--Ccchhh
Confidence 456666888888877654 44444442 667778887776533211000000 000000000000 000000
Q ss_pred ---CCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-----hhhHHHHHHhcccch-hHHHHHH
Q 000159 844 ---GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-----TGELFGGLRGRLYDS-NKNLVMA 914 (2013)
Q Consensus 844 ---~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~-----~~eL~~~L~~rL~Ds-N~~V~~~ 914 (2013)
..++.... . ......+....-+.+..+.+ + -+.+ ..-.+.. ..+.++.|...|.++ +..+...
T Consensus 232 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~-~--~~~~--~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~ 303 (457)
T 1xm9_A 232 QLEYNARNAYT--E-KSSTGCFSNKSDKMMNNNYD-C--PLPE--EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303 (457)
T ss_dssp HHHHTC----------------------------------CCC--CCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hcccccccccc--c-ccccchhhccchhhhhcccc-C--Cccc--cccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHH
Confidence 00000000 0 00000000000000000000 0 0000 0000110 134566666777543 5788888
Q ss_pred HHHHHHHHHHHhChh---h-Hhhh--hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHHhcC
Q 000159 915 TLITLGAVASAMGPA---V-EKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-----DKMVPYVTTALTDA 983 (2013)
Q Consensus 915 Al~~l~~La~alg~~---~-~~~~--~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl-----~~ll~~l~~~L~~~ 983 (2013)
|+.++..|+..-+.. . ...+ ...+|.+++.|.+.+..|+..|..+|..+...-.. ...+|.+...|.+.
T Consensus 304 a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSC
T ss_pred HHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCC
Confidence 899998887544331 2 1122 35689999999999999999999999988764432 23566777777654
Q ss_pred CC----ChhhHHHHHHHHHHHhccCCCC-C--ChhhhHHHHHhhcCCC-ChHHHHHHHHHHHHH
Q 000159 984 KL----GAEGRKDLFDWLSKQLTGLSGF-P--DAAHLLKPASIAMTDK-SSDVRKAAEACIVEI 1039 (2013)
Q Consensus 984 k~----~p~~R~~~l~~L~~~l~~~~~~-~--~~~~ll~pl~~~L~D~-~~dVR~aA~~~L~~l 1039 (2013)
.. ..++...++..|...+...... . .-...+++|...+... +.+|++.|...|..+
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 21 1234456666666655432210 0 1134567788888777 999999998877543
No 85
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.13 E-value=8.2 Score=53.68 Aligned_cols=173 Identities=10% Similarity=0.047 Sum_probs=116.2
Q ss_pred hHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHhChh-hHhhhhhHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHh
Q 000159 895 ELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLG-----DNKKHMRECTLTVLDAWLAA 966 (2013)
Q Consensus 895 eL~~~L~~rL~D--sN~~V~~~Al~~l~~La~alg~~-~~~~~~~llp~ll~~L~-----D~k~~Vr~aa~~aL~~i~~~ 966 (2013)
-++..|...+.+ .++..+..++-++|.|+.++..+ ..+++..++|.++..+. |.+..||..+.-+++.+.+-
T Consensus 451 ~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w 530 (1023)
T 4hat_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1023)
T ss_dssp HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH
Confidence 344555555543 57999999999999999998876 67899999999999886 57778888887888755443
Q ss_pred cC-----chhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC----------CCChhhhHHHHHhhcCCCChHHHHH
Q 000159 967 VH-----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG----------FPDAAHLLKPASIAMTDKSSDVRKA 1031 (2013)
Q Consensus 967 ~g-----l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~----------~~~~~~ll~pl~~~L~D~~~dVR~a 1031 (2013)
+. +..++..+...+.+. +|.+...++..+...-..... .+.+..++..+..++.+-...-+..
T Consensus 531 l~~~~~~L~~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 531 LKAHWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 32 455566666666544 355555555444433222111 1233444545666777778888899
Q ss_pred HHHHHHHHHHHcChhH-HHHHhccCChHHHHHHHHHHHh
Q 000159 1032 AEACIVEILRAGGQET-IEKNLKDIQGPALALILERIKL 1069 (2013)
Q Consensus 1032 A~~~L~~l~~~~G~~~-~~~~l~~L~~~~~~~i~~~l~k 1069 (2013)
+.++++.++...|.+. ...++..|-+.-...+...++.
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~ 647 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQ 647 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999998654 5556666655555555555543
No 86
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.00 E-value=0.52 Score=59.69 Aligned_cols=386 Identities=12% Similarity=0.035 Sum_probs=202.9
Q ss_pred hHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-h-hhh-----
Q 000159 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-E-AVD----- 127 (2013)
Q Consensus 57 ~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~--~~~v~~~LveK~l~~k~~~k~~A~~~ll~~~E~-~-~~~----- 127 (2013)
+-+++...|..+|..|..+|..+...... .... -...+|.||+-.-...+.++..|..++..+.-. + .-.
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~ 85 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 44566777889999999999887643221 1211 234688888763336788999998888887743 1 112
Q ss_pred hHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhh--------cC--------CChHHHHHHHH
Q 000159 128 VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF--------DH--------QDQNVRASSKG 190 (2013)
Q Consensus 128 ~v~~~L~~~~~-~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll--------~~--------~d~~VR~~a~~ 190 (2013)
..++.|...+. +.+++++..++.+|..+-..-..+..=++..++.|..++ ++ .+..|+..|..
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~ 165 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHH
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHH
Confidence 33567777787 789999999999998876531111100125678888888 22 34556667777
Q ss_pred HHHHHHHhhCCchhhHHHhh--hChHHHHHHHHHHHHhcCCCCCCCccchhhhhH---hhhhhccccCCCCCCCCCCCCC
Q 000159 191 LTLELCRWIGKDPVKTILFE--KMRDTMKKELEVELVNVSGTARPTRKIRAEQDK---ELGQELISEDVGPGPSEESTAD 265 (2013)
Q Consensus 191 l~~ely~~lG~~~l~~~l~~--~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~---~~~~ea~~~~~g~~~~~~~~~~ 265 (2013)
++..|... ++ .+..+.+ +.-+..+..|......... ..+.. ..... ......... . ..+
T Consensus 166 aL~nLs~~--~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~---~~~~~-e~a~~~L~nLs~~~~~~-~-~~~------- 229 (457)
T 1xm9_A 166 CLRNLSSA--DA-GRQTMRNYSGLIDSLMAYVQNCVAASRC---DDKSV-ENCMCVLHNLSYRLDAE-V-PTR------- 229 (457)
T ss_dssp HHHHHTTS--HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCT---TCTTH-HHHHHHHHHHTTTHHHH-S-CCH-------
T ss_pred HHHHHccC--HH-HHHHHHHcCCCHHHHHHHHHhhccccCC---chHHH-HHHHHHHHhcccchhcc-C-cch-------
Confidence 77766653 22 2233321 3333334444332211100 00100 00000 000000000 0 000
Q ss_pred CCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHHHHHHHHHh---cCCCCCC-CChHHHHHHHHHHhc-ccCHH
Q 000159 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA---STKRIAP-GDFTEVCRTLKKLIT-DVNIA 340 (2013)
Q Consensus 266 ~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~---~~pki~~-~~~~~l~~~L~k~l~-D~N~~ 340 (2013)
..... +.......... .. ..| .....+. +..+.+ + .+. ..++-.. --...+++.|...+. ..+..
T Consensus 230 -~~~~~-~~~~~~~~~~~-~~-~~~-~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 230 -YRQLE-YNARNAYTEKS-ST-GCF-SNKSDKM---MNNNYD-C-PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp -HHHHH-HTC------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred -hhhcc-ccccccccccc-cc-chh-hccchhh---hhcccc-C-CccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 00000 00000000000 00 011 1111110 001100 0 000 0000000 001356677777777 55678
Q ss_pred HHHHHHHHHHHHHHHhhhc---c-hhhh--HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHH
Q 000159 341 VAVEAIQAIGNLARGLRTH---F-SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVK 409 (2013)
Q Consensus 341 V~~~A~~~l~~La~~L~~~---f-~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l-----~~il~~l~ 409 (2013)
+...|+-+|..|+.+-... . ...+ ...+|.|++.+......|+..+..+|..+..+ ... ..+++.|+
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHH
Confidence 8888899999998653321 1 1112 35789999999999999999999999988764 222 23466777
Q ss_pred HHhhcCCh------HHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000159 410 TSVKNKVP------LVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG-TPEVRDAAFSVLAAI 472 (2013)
Q Consensus 410 ~~l~~Knp------~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds-~~~VR~aA~~al~~l 472 (2013)
.-|.+.++ .+...++..|..++...+.. ..... ...++.|..++... +.+|+..|...|..+
T Consensus 378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 77776543 56778888888877654332 11111 34678888989888 899999888877644
No 87
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.94 E-value=0.077 Score=64.54 Aligned_cols=187 Identities=15% Similarity=0.156 Sum_probs=129.9
Q ss_pred CCCCCCCCcccccccCcchhhhhhhcc--CCHHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHH
Q 000159 270 IDEYELVDPVDILTPLEKSGFWEGVKA--TKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAI 346 (2013)
Q Consensus 270 iD~~dl~~~vdIl~kl~~~~f~~~l~s--~kWkeR~eaL~~L~~l~-~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~ 346 (2013)
..||.-.|...|+.+. ..| .+ .+-+.+++++..+..+. .+..+....-..++..+.+.+...|..+....-
T Consensus 16 ~~p~~~~~k~~v~qe~--r~f----n~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvY 89 (355)
T 3tjz_B 16 SNPFQHLEKSAVLQEA--RVF----NETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCY 89 (355)
T ss_dssp ----CCCCHHHHHHHG--GGT----TSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHH
T ss_pred cCccccchHHHHHHHH--HHh----cCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3456555655554432 122 33 24455567888877655 453332233456777788889888888877776
Q ss_pred HHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000159 347 QAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (2013)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~ 426 (2013)
-.+..+++. ...+-.++..+.+=+.++++.+|-.|..+|..+... .-++.+.+.+..++.|++|-||..++--
T Consensus 90 Lyl~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~ 162 (355)
T 3tjz_B 90 LTIKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVS 162 (355)
T ss_dssp HHHHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 666666654 344668899999999999999999887777766542 3467788888999999999999999888
Q ss_pred HHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000159 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2013)
Q Consensus 427 L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~ 474 (2013)
..+++...+ . .++.++..+..++.|+++.|--.|..++..+.+
T Consensus 163 ~~kL~~~~p-e----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 163 SLHLLKCSF-D----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHTTTCH-H----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCH-H----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 887765432 2 236788899999999999998777776666653
No 88
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.77 E-value=1.9 Score=57.59 Aligned_cols=89 Identities=22% Similarity=0.218 Sum_probs=61.6
Q ss_pred hhhhcCCChhhhccCCChHHHHHHHHHHHHHhhccCCCCc-hHHH---hhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHh
Q 000159 8 LKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKD-NRIR---ELGPLFKKTVADSNAPVQDKALDALIAYLKAA 83 (2013)
Q Consensus 8 ~~~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~-~~~~---~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~ 83 (2013)
+.+=.=+|+-++|+|.+.+.|..|...|...+.. +.. ..+. -...++.+.+.|+|..|++.|..+|..+....
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~---~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQD---AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS---HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC---cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 4444668999999999999999999999988742 111 1111 12345677899999999999999998877655
Q ss_pred chhhhhh--HHHHHHHHH
Q 000159 84 DADAGRY--AKEVCDAIA 99 (2013)
Q Consensus 84 ~~~~~~~--~~~v~~~Lv 99 (2013)
+.++..+ ..+|++.|.
T Consensus 108 g~d~~~~l~~~~il~~L~ 125 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIE 125 (684)
T ss_dssp CHHHHHHHHHTTHHHHHH
T ss_pred CchHHHHHHHcChHHHHH
Confidence 4433322 233555443
No 89
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.64 E-value=0.74 Score=62.18 Aligned_cols=256 Identities=17% Similarity=0.119 Sum_probs=158.9
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChh--HHhhh----hhccHH
Q 000159 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD--IKGFL----ADVKPA 804 (2013)
Q Consensus 731 npKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~--l~~~L----~~lkp~ 804 (2013)
++.++.+++..|.-+.- |... ..+++.+... +.+.++.+|..|.-.+|-+|.-.|+. +...+ ++....
T Consensus 450 ~~~ir~gAaLGLGla~~--GS~~---eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~ 523 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAM--GSAN---IEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN 523 (963)
T ss_dssp HHHHHHHHHHHHHHHST--TCCC---HHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH
T ss_pred cHHHHHHHHHHHHHHhc--CCCC---HHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH
Confidence 47788888877765432 4322 3567777776 77777888999999999888655532 22111 111111
Q ss_pred HHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhc-CCCChHHHHHHHHHHHHHHHh
Q 000159 805 LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL-ESPDWKVRLESIEAVNKILEE 883 (2013)
Q Consensus 805 ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l-~d~~Wk~R~eale~l~~il~~ 883 (2013)
+...+---+..+- +.+.+ ..+.+++.+ .+.+|-+|..++-.+.-.
T Consensus 524 vrR~aalgLGll~---------------------------~g~~e----~~~~li~~L~~~~dp~vRygaa~alglA--- 569 (963)
T 4ady_A 524 ITRGLAVGLALIN---------------------------YGRQE----LADDLITKMLASDESLLRYGGAFTIALA--- 569 (963)
T ss_dssp HHHHHHHHHHHHT---------------------------TTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhh---------------------------CCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHH---
Confidence 1100000000000 00011 123454444 467899999887665421
Q ss_pred ccccCCCCChhhHHHHH-HhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHh-CCCcHHHHHHHHHHHH
Q 000159 884 ANKRIQPAGTGELFGGL-RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLD 961 (2013)
Q Consensus 884 a~~~I~~~~~~eL~~~L-~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D~k~~Vr~aa~~aL~ 961 (2013)
.....+ ...++.| .....|.+..|++.|+..|+.|+ +|.. ..++.++..| .+.++.||..+.-+|+
T Consensus 570 ---yaGTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~------e~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 570 ---YAGTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDY------TTVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp ---TTTSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred ---hcCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222222 3445534 33457888889999888887664 3332 2355566544 4678999999999999
Q ss_pred HHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCC--CCChhhhHHHHHhhcCC--CChHHHHHHHHHHH
Q 000159 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD--KSSDVRKAAEACIV 1037 (2013)
Q Consensus 962 ~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D--~~~dVR~aA~~~L~ 1037 (2013)
-+....+...+++.+...+.+. +..+|+.++.-|......... .+.+..++.-+.+.+.| .++.+|-.++-+.+
T Consensus 638 li~aGn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 638 IACAGKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp HHTSSSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 8887777778888777777766 589999999999877655443 23566777777777766 45778888887777
Q ss_pred HHH
Q 000159 1038 EIL 1040 (2013)
Q Consensus 1038 ~l~ 1040 (2013)
-+.
T Consensus 716 ll~ 718 (963)
T 4ady_A 716 IMN 718 (963)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 90
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.54 E-value=0.01 Score=61.54 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=60.8
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhh
Q 000159 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2013)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (2013)
+.|+..+.|.+|.+|..|+..+..+- -.+.+..|...+.|.+..|+..|+..++.+. -.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~ 103 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GE 103 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cH
Confidence 56777778888888888877765431 1345667777777888888888888877653 12
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000159 936 GVLSDILKCLGDNKKHMRECTLTVLD 961 (2013)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~ 961 (2013)
..++.++..+.|....||.+|..+|.
T Consensus 104 ~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45677777888888888888877764
No 91
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=94.96 E-value=1.2 Score=61.31 Aligned_cols=401 Identities=10% Similarity=0.023 Sum_probs=210.4
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-hh--hhHHHHHHHHHHhhcC-C-ChhHHHHHHHHHHHHHhhhhh--
Q 000159 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADAD-AG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELEAV-- 126 (2013)
Q Consensus 54 ~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~-~~--~~~~~v~~~LveK~l~-~-k~~~k~~A~~~ll~~~E~~~~-- 126 (2013)
.+.+..++.|+.-.-|-.|.|.+..++...... +. ...-+++..++.++|. + .+.+...=..|+-...+.-+|
T Consensus 510 ~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR 589 (997)
T 1vsy_5 510 FELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRR 589 (997)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhh
Confidence 455667889999999999999998887665331 21 2345677778888886 3 555554322332222222223
Q ss_pred -hhHHHHHHH--H---hhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHHhhhhhhcCCChHHHHHHHHHHHHHHHhhC
Q 000159 127 -DVFLDVMEK--A---IKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (2013)
Q Consensus 127 -~~v~~~L~~--~---~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (2013)
..+++.|.. . ......=..+..+..|..++.+.|-+.-..++++..+. +.|+-++||++.-.++..++...-
T Consensus 590 ~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 590 SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 456665522 1 12223334556788899999999987656788887777 999999999999999998887762
Q ss_pred Cch---hhHHHh---h----------hChHHHHHHHHHHHHhcC---C---CCCCCccchhhhhHhhh--hhccccCCCC
Q 000159 201 KDP---VKTILF---E----------KMRDTMKKELEVELVNVS---G---TARPTRKIRAEQDKELG--QELISEDVGP 256 (2013)
Q Consensus 201 ~~~---l~~~l~---~----------~Lk~~q~keLe~~f~k~~---~---~~~P~R~~rs~~~~~~~--~ea~~~~~g~ 256 (2013)
-.. ++..+. . ...+....-+.+.|++++ + ...|.-..++....-.+ ..=-....+.
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~ 747 (997)
T 1vsy_5 668 NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARG 747 (997)
T ss_dssp CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSG
T ss_pred ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcC
Confidence 100 110000 0 001111111222232221 0 00010000000000000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCCHHHHHHH-HHHHHHHhcCCCCCCCChHHHHHHHHHHhc
Q 000159 257 GPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDA-VAELTKLASTKRIAPGDFTEVCRTLKKLIT 335 (2013)
Q Consensus 257 ~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~ea-L~~L~~l~~~pki~~~~~~~l~~~L~k~l~ 335 (2013)
+. ...+-|| .... ++ | .+....+.++=.+-... ...+...++.--+.+.....++.+|.....
T Consensus 748 ~~--------~~~l~~~--~~~~-ll---P--~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~ 811 (997)
T 1vsy_5 748 PN--------KVLLVPY--LVDY-VL---P--FLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNV 811 (997)
T ss_dssp GG--------HHHHHHH--HTTT-TT---T--TTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTT
T ss_pred CC--------ccchhhh--hHHH-HH---H--HHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 00 0000000 0000 11 1 12111122211110000 011112222211222334456666666555
Q ss_pred -ccCHHHHHHHHHHHHHHHHHhhhcc--h-hhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCC-ChHhHHHHHH
Q 000159 336 -DVNIAVAVEAIQAIGNLARGLRTHF--S-GSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCL-NLVDVVEDVK 409 (2013)
Q Consensus 336 -D~N~~V~~~A~~~l~~La~~L~~~f--~-~~~~~llp~LL~klkdkk-~~V~~aa~~aL~ai~~~~~~-~l~~il~~l~ 409 (2013)
+.+= .+..++..++.+.- ++-| . .....++..++..+.|+. ..||+.|..+|..++. |. ....+. .++
T Consensus 812 ~s~sW-~R~~~L~~lq~~~f--~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~--c~~~~~~~~-~li 885 (997)
T 1vsy_5 812 ALSSN-QTKLQLAFIQHFLS--AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH--NWKEEQPLL-SLI 885 (997)
T ss_dssp TSCSS-SHHHHHHHHHHHHH--HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH--SCCSHHHHH-HHH
T ss_pred cCCcH-HHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--cCCchhhHH-HHH
Confidence 4454 66666666655543 2222 1 233577888888999999 9999999999999986 65 433333 333
Q ss_pred HHhhcCC----------------hHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 410 TSVKNKV----------------PLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 410 ~~l~~Kn----------------p~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
..+..+- -..|-++.--|..++...|-.. +.+.++.++..|...++|+.+ |+..+.+++..|
T Consensus 886 ~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseF 964 (997)
T 1vsy_5 886 ERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEF 964 (997)
T ss_dssp HHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHH
T ss_pred HHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHH
Confidence 3333221 1455677777777887765432 245667778888888899666 999999999999
Q ss_pred HHHhCch
Q 000159 473 AKSVGMR 479 (2013)
Q Consensus 473 ~~~~Ge~ 479 (2013)
.+.--+.
T Consensus 965 krTH~D~ 971 (997)
T 1vsy_5 965 KKVRADT 971 (997)
T ss_dssp HHHTSTT
T ss_pred Hhccchh
Confidence 9876653
No 92
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.87 E-value=0.22 Score=60.81 Aligned_cols=189 Identities=9% Similarity=0.012 Sum_probs=128.6
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CCh--HHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDF--TEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~--~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (2013)
.+...+.+.+-..+..|...|..|.....-.. ..+ ...++.|.+.+ ...+..+...|+.+|..|+..-...-...
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 210 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHH
Confidence 46667778888889999999998875310000 000 12355666654 35567788899999999987332111122
Q ss_pred -hHhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000159 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (2013)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~ai~~~--~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~ 430 (2013)
....+|.|++.+...+. .+++.+..+|..+..+ ++... ...++.|...|++.+..++.+++..|..+
T Consensus 211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35689999999987654 4888888888888752 01110 12577888889999999999999999886
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000159 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2013)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2013)
.... ........ .-.+|.|+.++.+.++.+|+.|..+|..+...-++
T Consensus 291 a~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 291 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred hCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 5322 22221222 34789999999999999999999999988865443
No 93
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=94.50 E-value=19 Score=47.83 Aligned_cols=287 Identities=11% Similarity=0.069 Sum_probs=156.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHH
Q 000159 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 809 (2013)
Q Consensus 730 KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~L 809 (2013)
++..++.-++-.|+.+-..-+.....+..+.+.+.+. |.+.+...|.-|++.|.++ ...+.++..|..-.. .++.|
T Consensus 306 ~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~-L~~~~~~~~~~AvEgLaYL--Sl~~~VKe~L~~d~~-~L~~L 381 (778)
T 3opb_A 306 NVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA-ISRRIVPKVEMSVEALAYL--SLKASVKIMIRSNES-FTEIL 381 (778)
T ss_dssp TSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHH--TTSSHHHHHHHHCHH-HHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH-HhcCCccHHHHHHHHHHHH--hCCHHHHHHHHhCHH-HHHHH
Confidence 4567787777777776654344456677899999887 8887766799999988755 567788877743322 22233
Q ss_pred HHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCC-CcccccccchHHHH------hcCCCChHHHHHHHHH-HHHHH
Q 000159 810 DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP-REDISGKFTPTLVK------SLESPDWKVRLESIEA-VNKIL 881 (2013)
Q Consensus 810 e~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lp-r~dIs~~L~~~ll~------~l~d~~Wk~R~eale~-l~~il 881 (2013)
-+-+.. .... +. .-++.. -...-........+ ...+ .+|. .+.+ .-.|..+ ...+.+.. -...
T Consensus 382 v~llk~-~~d~-s~-~Ygal~--IL~NLt~~~~~~~~e~~~l-~~Lk-~~A~~~~p~~~~~d~~~-~~~~~v~~~~~~~- 452 (778)
T 3opb_A 382 LTMIKS-QKMT-HC-LYGLLV--IMANLSTLPEEXXXXXXXX-XXXX-XXXXXXXPAADKVGAEK-AAKEDILLFNEKY- 452 (778)
T ss_dssp HHHHTT-TCCT-TH-HHHHHH--HHHHTTCCCCCCCCCCC--------------------CCTHH-HHHHHHHHHHHHH-
T ss_pred HHHHhC-CCCc-hH-HHHHHH--HHHHhcCCCcccchhhhhh-hhhh-hhccccCcccCcccccc-cchHHHHHHHHHH-
Confidence 222221 1100 00 000000 00000000000000 0000 0000 0000 0011111 12222222 1112
Q ss_pred HhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHh-hh-hhHHHHHHHHhCCCcHH---HHHHH
Q 000159 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SS-KGVLSDILKCLGDNKKH---MRECT 956 (2013)
Q Consensus 882 ~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~-~~-~~llp~ll~~L~D~k~~---Vr~aa 956 (2013)
+.. ..+++.|...++..+..++..|+.++..|+.. +..+. .+ ...++.++..|.+.... +|..|
T Consensus 453 ------l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~A 521 (778)
T 3opb_A 453 ------ILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILG 521 (778)
T ss_dssp ------TTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHH
T ss_pred ------HHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHH
Confidence 221 34788888888888899999999999999744 33322 22 35789999999887655 89999
Q ss_pred HHHHHHHHHhcCc---------hhhHHHHHHHHhc-CCC-----------ChhhHHHHHHHHHHHhccCCCC------CC
Q 000159 957 LTVLDAWLAAVHL---------DKMVPYVTTALTD-AKL-----------GAEGRKDLFDWLSKQLTGLSGF------PD 1009 (2013)
Q Consensus 957 ~~aL~~i~~~~gl---------~~ll~~l~~~L~~-~k~-----------~p~~R~~~l~~L~~~l~~~~~~------~~ 1009 (2013)
..+|..+...+.. -..++.+...|.. +.. +...+.+++..|..... .+.. ..
T Consensus 522 A~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs-~~~n~~E~~r~~ 600 (778)
T 3opb_A 522 CRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS-SETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHH-CCSHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhc-CCcccchHHHHH
Confidence 9999988865532 1345667777762 210 00226777777765433 3210 11
Q ss_pred h-h--hhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000159 1010 A-A--HLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2013)
Q Consensus 1010 ~-~--~ll~pl~~~L~D~~~dVR~aA~~~L~~l~~ 1041 (2013)
+ . ..++.|...|.+.+..||.+|.+++..++.
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 1 2 134457778888899999999999999986
No 94
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.29 E-value=2.2 Score=57.63 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=98.3
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHH
Q 000159 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (2013)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 371 (2013)
..++|. |..|+-.|.-|-. ++..+.+..|.+.+. ..+..+...|+-.||.+..|.+.+ .+..|
T Consensus 369 k~~~~~-k~sA~aSLGlIh~------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-------~~~lL 434 (963)
T 4ady_A 369 KAQNWA-KFTATASLGVIHK------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-------TTDYL 434 (963)
T ss_dssp HCCTHH-HHHHHHHHHHHTS------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-------HHHHH
T ss_pred ccchHH-HHHHHHHhhhhcc------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-------HHHHH
Confidence 357776 4556666655432 223345666777775 456789999999999998877642 33444
Q ss_pred HHHhccCc--------HHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000159 372 LEKLKEKK--------PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (2013)
Q Consensus 372 L~klkdkk--------~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (2013)
.+.+.+.+ ..++..+.-+|.-++.. +.=+++++.|...+.+.++.++..+...|+.++-.+..... +
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G--S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---i 509 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG--SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---I 509 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---H
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---H
Confidence 44454433 56777766666655432 33467888888888877777787777777766544332211 2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000159 444 KDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2013)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~al~~l 472 (2013)
..++.. +++|.+..||..+.-+|+.+
T Consensus 510 ~~LL~~---~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 510 HDMFTY---SQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHH---HHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHH---HhccCcHHHHHHHHHHHHhh
Confidence 333333 33567788998888888866
No 95
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.28 E-value=0.3 Score=51.33 Aligned_cols=100 Identities=17% Similarity=0.292 Sum_probs=77.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (2013)
+.+.||. .+-.|.++++. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 18 l~~~dw~----~ileicD~I~~-----~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWG----LILDICDKVGQ-----SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHH----HHHHHHHHHTT-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHC-----CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 4566895 34445555531 2233478999999999999999999999999999999999987543 55776
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000159 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (2013)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2013)
.+.+.+....+.|++-+...+..|.....-+
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 6666666677889999999999999887533
No 96
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.19 E-value=0.45 Score=51.28 Aligned_cols=99 Identities=13% Similarity=0.292 Sum_probs=75.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (2013)
+.+.||.. +-.|.++++. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 28 ~~~~Dw~~----~leicD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSL----IMDICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 34568963 4445666652 1233478999999999999999999999999999999999997432 44666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000159 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.+++.+.. ..+.|++-+...+..|....+-
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 66666654 5578999999999999998763
No 97
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=93.92 E-value=2.3 Score=54.99 Aligned_cols=308 Identities=14% Similarity=0.172 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHhhhcChh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHhhh-CCChhHHHHHHHHHHHHHHHhCCC
Q 000159 680 KCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVS 752 (2013)
Q Consensus 680 ~~~~~il~~LveKlgD~K---~r~~a~e~L~~l~e~~~~~~V---l~~L~~~l~~-~KnpKv~~~~l~~L~~li~~fG~~ 752 (2013)
+.+...|+.|++++.+.. -|..|...|..++..+..... +..++..+.. ..+..+...+|+.|..++..-+..
T Consensus 17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 467788889999987754 377778888888776543322 4445554432 356777777787777765422110
Q ss_pred -----------CC---------ChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhccHHHHHHHHHH
Q 000159 753 -----------HL---------KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2013)
Q Consensus 753 -----------~l---------~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2013)
.+ .-..-+..+..+ |+..+-.||-.++++|..|...-+...+..+ -.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~I-----------l~- 163 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQII-----------LV- 163 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-----------HH-
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHHH-----------Hh-
Confidence 00 002345666677 8999999999999999998765544333221 11
Q ss_pred HhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC-
Q 000159 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA- 891 (2013)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~- 891 (2013)
.+. =.+.|+..++|+.-.+|.||+-.|..+... |..|+.-
T Consensus 164 ---~p~-----------------------------------gi~~Lv~lL~d~rE~iRneallLL~~Lt~~-n~~iQklV 204 (651)
T 3grl_A 164 ---SPM-----------------------------------GVSRLMDLLADSREVIRNDGVLLLQALTRS-NGAIQKIV 204 (651)
T ss_dssp ---STT-----------------------------------HHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ---Ccc-----------------------------------cHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 000 024678888999999999999999988863 3444421
Q ss_pred ChhhHHHHHHhcccch----hHHHHHHHHHHHHHHHHHhChhhHhhhh--hHHHHHHHHhCCCcH-------HHHH--HH
Q 000159 892 GTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKK-------HMRE--CT 956 (2013)
Q Consensus 892 ~~~eL~~~L~~rL~Ds----N~~V~~~Al~~l~~La~alg~~~~~~~~--~llp~ll~~L~D~k~-------~Vr~--aa 956 (2013)
-|...+..|...+... ...|+.-++.++..|... .+.-..|.+ .++|.+...|..... .++. .+
T Consensus 205 AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~-N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~ 283 (651)
T 3grl_A 205 AFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN-NNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLM 283 (651)
T ss_dssp HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHH
Confidence 1334455555555332 337788888888877744 211111111 234444444432211 1111 12
Q ss_pred HHHHHHHHHhcCc-------------hhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCC------------Chh
Q 000159 957 LTVLDAWLAAVHL-------------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP------------DAA 1011 (2013)
Q Consensus 957 ~~aL~~i~~~~gl-------------~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~------------~~~ 1011 (2013)
..++..++...+. ..+++.+...+-..+....+|.+++..++..+...+... ...
T Consensus 284 L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p 363 (651)
T 3grl_A 284 LQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRP 363 (651)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEE
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcC
Confidence 2333333221110 113445556655554556789999998888776443211 111
Q ss_pred hhHHHHHhhcCCC-ChHHHHHHHHHHHHHH
Q 000159 1012 HLLKPASIAMTDK-SSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 1012 ~ll~pl~~~L~D~-~~dVR~aA~~~L~~l~ 1040 (2013)
.++..+...+++. .-++|-+|..|+..+.
T Consensus 364 ~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 364 AIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1222244445554 4689999999998765
No 98
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.83 E-value=0.029 Score=64.86 Aligned_cols=187 Identities=12% Similarity=0.073 Sum_probs=108.3
Q ss_pred HHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCcHhHHHHHHHHHHHHHHhhChhHHhhhhhcc
Q 000159 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (2013)
Q Consensus 723 ~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lk 802 (2013)
+..+..+.+|.||..+...+ + ...+..+ +.|.++.||..|...+. .+.+..++.+-.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~---------~~~l~~L-~~D~~~~VR~~aA~~L~------~~~L~~ll~D~d 111 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------P---------VEALTPL-IRDSDEVVRRAVAYRLP------REQLSALMFDED 111 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------C---------GGGGGGG-TTCSSHHHHHHHHTTSC------SGGGGGTTTCSC
T ss_pred HHHHhcCCCHHHHHHHHHhC-------C---------HHHHHHH-ccCcCHHHHHHHHHHCC------HHHHHHHHcCCC
Confidence 33445788899998877643 1 1124556 88999999998886421 122333333333
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHH
Q 000159 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILE 882 (2013)
Q Consensus 803 p~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr~dIs~~L~~~ll~~l~d~~Wk~R~eale~l~~il~ 882 (2013)
+......-..+ + .+.+...+.|.+|.+|..+...+
T Consensus 112 ~~VR~~aA~~l--------------------------------~--------~~~L~~L~~D~d~~VR~~aA~~l----- 146 (244)
T 1lrv_A 112 REVRITVADRL--------------------------------P--------LEQLEQMAADRDYLVRAYVVQRI----- 146 (244)
T ss_dssp HHHHHHHHHHS--------------------------------C--------TGGGGGGTTCSSHHHHHHHHHHS-----
T ss_pred HHHHHHHHHhC--------------------------------C--------HHHHHHHHcCCCHHHHHHHHHhc-----
Confidence 32222221110 0 01233446788888888876521
Q ss_pred hccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000159 883 EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (2013)
Q Consensus 883 ~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2013)
. .+ .|...++|.+..|+..++.. ++. +.+...++|....||.++...+
T Consensus 147 ------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~l-- 194 (244)
T 1lrv_A 147 ------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASRL-- 194 (244)
T ss_dssp ------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHHC--
T ss_pred ------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHhC--
Confidence 1 11 23455678888888777653 221 2233566888888888887653
Q ss_pred HHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHH
Q 000159 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (2013)
Q Consensus 963 i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~L 1036 (2013)
+. +.+...+.++ ++++|..+...+. .+.+..|.|.++.||.+|...|
T Consensus 195 -----~~----~~L~~Ll~D~--d~~VR~~aa~~l~----------------~~~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -----RG----DDLLELLHDP--DWTVRLAAVEHAS----------------LEALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----CG----GGGGGGGGCS--SHHHHHHHHHHSC----------------HHHHHHCCCCCHHHHHHHHCCC
T ss_pred -----CH----HHHHHHHcCC--CHHHHHHHHHcCC----------------HHHHHHccCCCHHHHHHHHHHh
Confidence 22 2344446666 5788888776631 1333445888899998887654
No 99
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.83 E-value=6.4 Score=45.46 Aligned_cols=127 Identities=12% Similarity=0.166 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000159 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2013)
.+|.+.|.+++.++-+. .+.-|.++++.+.....|.+..|+...+..|++.++. + ..++..+++.|...+.|..
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 68999999999976321 2346788888888877799999999988888888732 2 3578899999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC----h-------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000159 380 PTVAESLTQTLQAMHKA----GC--LN----L-------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (2013)
Q Consensus 380 ~~V~~aa~~aL~ai~~~----~~--~~----l-------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (2013)
+.|...+..|...++.. -| .+ . ..+-..|+.-+++.|..+|..+++|+.+++.
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 99999888888888765 11 11 1 1233455666778999999999999999884
No 100
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=93.72 E-value=0.59 Score=59.05 Aligned_cols=187 Identities=9% Similarity=0.017 Sum_probs=127.4
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcCCCCCC-CCh--HHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDF--TEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~-~~~--~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (2013)
.+...+.+.+=..+..|...|..|.....-.. ... ...++.|.+.+ ...+..+...|+.+|..|+..-...-...
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 46666777778888899999988864210000 000 12355666654 45577889999999999998432211122
Q ss_pred -hHhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000159 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (2013)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~ai~~~--~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~ 430 (2013)
....+|.|.+.+...+. .+++.+..+|..+..+ ++... ...++.|...|.+.+..++.+++..|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999987654 3888888888887752 11110 12467788888999999999999999887
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000159 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2013)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~ 476 (2013)
.... ........ .-.+|.|+.++...++.+|+.|..+|..+...-
T Consensus 407 a~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 407 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 5332 22222222 347899999999999999999999999887643
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.65 E-value=0.2 Score=62.31 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCCC
Q 000159 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 948 (2013)
Q Consensus 869 ~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~ 948 (2013)
+|..+.+.+..+ .. +.+. .+++..|...+....|.|+..++-.+..+ .++-.-...+++.++..|+|.
T Consensus 244 VRETaAQtLGaL-~h----Lp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~ 311 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YP----LIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSP 311 (800)
T ss_dssp HHHHHHHHHHHH-TT----TSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHH-Hh----CChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCc
Confidence 788899988876 32 2222 24444454555777899999999988888 222111678899999999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC-CCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChH
Q 000159 949 KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA-KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSD 1027 (2013)
Q Consensus 949 k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~-k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~d 1027 (2013)
...||..|..+|--++..-.++.++..++..|.+- ..+ ..-..++..|+.....-........+++-++.+|.+.-.+
T Consensus 312 DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLS-ASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 312 DEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS-VSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp SHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCC-TTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHH
T ss_pred ccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccc-hhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHH
Confidence 99999999999998883334778888999998742 122 2245555556554432222111235555699999999999
Q ss_pred HHHHHHHHHHHHH
Q 000159 1028 VRKAAEACIVEIL 1040 (2013)
Q Consensus 1028 VR~aA~~~L~~l~ 1040 (2013)
||.++..++.+|.
T Consensus 391 VR~AVL~TL~tfL 403 (800)
T 3oc3_A 391 VRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987765
No 102
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.60 E-value=38 Score=48.08 Aligned_cols=129 Identities=12% Similarity=-0.000 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----hhhcchhhhHhHHHHHHH
Q 000159 298 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHFSGSSRFLLPVLLE 373 (2013)
Q Consensus 298 kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~----L~~~f~~~~~~llp~LL~ 373 (2013)
+=..|++|-+.|..+-+.| ..+..+...|. -.+.+..|+..|+.++....+. +..+-..+++..+-..+.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~ 99 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIA 99 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc----hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 5557999988888876544 23333333332 1366788999999999887754 222222344433333333
Q ss_pred Hhc----cCcHHHHHHHHHHHHHHHHhc-CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000159 374 KLK----EKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (2013)
Q Consensus 374 klk----dkk~~V~~aa~~aL~ai~~~~-~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~ 433 (2013)
... +....|+..+..++..|+... ....++++++|...+++ ++..+..++.+|..+.+.
T Consensus 100 ~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 100 NGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 332 145889999999999999871 23467899999887766 677788888888877653
No 103
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.52 E-value=0.69 Score=49.02 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=77.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. ++-.|.++++. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 24 l~~~dw~----~ileicD~I~~-----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWA----SINGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHH----HHHHHHHHGGG-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHC-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 4556895 44445555532 223347899999999999999999999999999999999999643 466888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCc
Q 000159 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.+++.+.+ ....|++-+...+..|....+-
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 88888875 4578999999999999998753
No 104
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.21 E-value=0.64 Score=56.74 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCCC-CCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHHHHHh
Q 000159 301 ERKDAVAELTKLASTKR-IAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (2013)
Q Consensus 301 eR~eaL~~L~~l~~~pk-i~~--~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (2013)
.|++|...|..|+.+.. ... ..++.+++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL 179 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH
Confidence 47788888888874321 000 01345678888888888889999999999999864111111111 25689999874
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----h---HhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000159 376 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (2013)
Q Consensus 376 -kdkk~~V~~aa~~aL~ai~~~~~~~----l---~~il~~l~~~l~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (2013)
......+++.+..+|..+..+ +.. + ...++.|...+.+.++ .++..++..|..+-.. ........
T Consensus 180 ~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 180 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 556778888888888887653 111 1 2356777777876554 4888777766654321 12221111
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 442 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
.. ...+|.++..|.+.+.+|++.|..+|+.+.
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 12 337899999999999999999999998775
No 105
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.96 E-value=0.89 Score=48.15 Aligned_cols=111 Identities=14% Similarity=0.236 Sum_probs=83.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. ..-.|..+++.. +..-.+.+.+|++||+..|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 14 l~~~dw~----~~leicD~I~~~-----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 14 MSEQDWS----AIQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp CSSCCHH----HHHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 4567895 344566666521 22247899999999999999999999999999999999999654 367888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000159 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2013)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2013)
.+.+.+.+ ....|++-+...+..|....+-..-+..+...|.
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 88888765 3678999999999999998753332344444444
No 106
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.90 E-value=0.86 Score=49.49 Aligned_cols=110 Identities=14% Similarity=0.218 Sum_probs=82.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHHH
Q 000159 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSD 940 (2013)
Q Consensus 863 ~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp~ 940 (2013)
.+.||. .+-.|.++++.. +..-.+.+.+|+++|+..|.+|+..||.++..+++.+|..|... .+.|+..
T Consensus 27 ~~~Dw~----~ileicD~I~~~-----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 27 RQEDWE----YIIGFCDQINKE-----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp SSCCHH----HHHHHHHHHHHS-----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCcCHH----HHHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 456895 444566666531 22347899999999999999999999999999999999999753 3557888
Q ss_pred HHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000159 941 ILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (2013)
Q Consensus 941 ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~ 981 (2013)
|++.+.. ....|++-+...+..|....+-..-+..+...|.
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 8887763 3578999999999999998864433444444444
No 107
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=92.90 E-value=0.69 Score=58.41 Aligned_cols=172 Identities=11% Similarity=0.069 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHHHHHh
Q 000159 301 ERKDAVAELTKLASTKRIAPG---DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (2013)
Q Consensus 301 eR~eaL~~L~~l~~~pki~~~---~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (2013)
.+++|...|..|+.+..-... .++..++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 467888888888743210000 1345678888888888888999999999999753111111111 25689999975
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----h---HhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000159 376 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (2013)
Q Consensus 376 -kdkk~~V~~aa~~aL~ai~~~~~~~----l---~~il~~l~~~l~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (2013)
......+++.+..+|..+..+ +.. + ...++.|...|.+... .++..++..|..+-.. ........
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 556778888888888888764 211 1 2356777777776543 4888877777654331 12222111
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 442 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
.. ...+|.++.+|.+.+.+|++.|..+|+.+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 11 347899999999999999999999998875
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=92.68 E-value=32 Score=47.88 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=119.7
Q ss_pred HHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcch-hhhHhHHHHHHHHhccC-----cHHHHHHHHHHHHH---HH
Q 000159 326 VCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEK-----KPTVAESLTQTLQA---MH 394 (2013)
Q Consensus 326 l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klkdk-----k~~V~~aa~~aL~a---i~ 394 (2013)
++..|.+.+. +.+-.....+|=++|.++..+....+ ++...+++.|+..+..+ |..++....-++.. |.
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 3445555554 34567778889999999877776544 78888888888776333 55555544334432 33
Q ss_pred HhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------HHhhhhHHHHHHHHhcCCCHHHHHHHHH
Q 000159 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV-------LKVHKDYVPICMECLNDGTPEVRDAAFS 467 (2013)
Q Consensus 395 ~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l-------~~~l~~l~p~l~k~l~Ds~~~VR~aA~~ 467 (2013)
.....-+..++..|+..+.+.++.|...++..+..+.+.+...-. .+++..++..+..+..+=.++-.-.-.+
T Consensus 558 ~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lye 637 (1073)
T 3gjx_A 558 RAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYE 637 (1073)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 221123567778888889999999999999999888887765421 2356777777777778878888888899
Q ss_pred HHHHHHHHhCchh-HHHHHhhccHHHHHHHHHHHh
Q 000159 468 VLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIA 501 (2013)
Q Consensus 468 al~~l~~~~Ge~~-~~~~l~~Ld~~~~kki~e~~~ 501 (2013)
+++.+....|... ...++..|=+..-.+..+.++
T Consensus 638 av~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~ 672 (1073)
T 3gjx_A 638 AVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQ 672 (1073)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998753 456666654444445555443
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.25 E-value=1.1 Score=50.60 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=60.5
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh-cccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHH
Q 000159 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2013)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~-rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (2013)
....+....+|.-|+..|..+ .. ..+++..++. .-.|.++.|+..+...++.++...+++ ..+
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~---------~~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------~~l 141 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL---------SK-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------KAL 141 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT---------TT-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------TTH
T ss_pred HHHhCcchHHHHHHHHHHHhc---------cC-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------HHH
Confidence 334555678888887744422 12 2677777777 447888888888888877777655544 256
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000159 939 SDILKCLGDNKKHMRECTLTVLDAWL 964 (2013)
Q Consensus 939 p~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2013)
+.+..-+.|.+..||.+|...+.-|+
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~ 167 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWT 167 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGG
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHh
Confidence 67777788888888888877765544
No 110
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=90.98 E-value=1.7 Score=46.57 Aligned_cols=99 Identities=18% Similarity=0.352 Sum_probs=74.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-chhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~ll 938 (2013)
+.+.||.. .-.|.++++. .+..-.+.+.+|++||+ ..|.+++..||.++..+++.+|..|... .+.|+
T Consensus 29 l~~~Dw~~----~leicD~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWAL----NMEICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 34568963 4445556542 12334789999999997 6899999999999999999999999863 24477
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCc
Q 000159 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.. +++.+.. ....|++-+...+..|....+-
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 76 5666643 3457999999999999998753
No 111
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.53 E-value=10 Score=46.39 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000159 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2013)
.+|.+.|.+++.|+-+. .+.-|.++++.|.....|.+..|+...+..|++.+.. + ..++..+++.|...+.|..
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999965211 2234667777777777799999999999999888853 2 2457888899999999999
Q ss_pred HHHHHHHHHHHHHHHHh------cCCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000159 380 PTVAESLTQTLQAMHKA------GCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (2013)
Q Consensus 380 ~~V~~aa~~aL~ai~~~------~~~~-----------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (2013)
+.|...+..|...++.. .+.+ +..+-..|+..+++.|..+|..|+.|+.+++.
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99988888888877744 0111 12334556666788999999999999999885
No 112
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=90.44 E-value=0.57 Score=49.63 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=75.1
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChh
Q 000159 96 DAIAAKCLTGRPKTVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPK 167 (2013)
Q Consensus 96 ~~LveK~l~~k~~~k~~A~~~ll~~~E~-----~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k 167 (2013)
..+|+|+=+ +...+---+.++.+++. +.+..++..|.+.+.|+||+++.-+|..|-.++++=|... |.-+
T Consensus 13 ~~~IekATs--~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~ 90 (149)
T 3g2s_A 13 EARINRATN--PLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF 90 (149)
T ss_dssp HHHHHHHSC--TTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH
T ss_pred HHHHHHHcC--CCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH
Confidence 445666532 22222223344444444 2467788899999999999999999999999999888632 4457
Q ss_pred HHHHhhhhhhcC------CChHHHHHHHHHHHHHHHhhCC
Q 000159 168 RILKMLPELFDH------QDQNVRASSKGLTLELCRWIGK 201 (2013)
Q Consensus 168 ~il~~l~~ll~~------~d~~VR~~a~~l~~ely~~lG~ 201 (2013)
.|+..|.+++.. .+..||+....++.+-+...+.
T Consensus 91 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 91 RFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 899999999964 6899999999998887776654
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.95 E-value=2.7 Score=47.58 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=107.2
Q ss_pred hhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHhcCchh
Q 000159 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAAVHLDK 971 (2013)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~-~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2013)
..+++........|..-.|+..|+.+++.+ . ....+++.+.. .-.|..=-||+.+..++..++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 356666666666777778999999877765 1 23567777776 5567777899999999999998888888
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHH
Q 000159 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (2013)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~L~~l~~~~G~~~~~~ 1050 (2013)
.++.+..-+.++ |+.+|..++..+.- +...+......+.+.| |-....|++.-||++..-.|..+.+.-+ +.+..
T Consensus 140 ~l~~~~~W~~d~--n~~VRR~Ase~~rp-W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P-d~V~~ 215 (240)
T 3l9t_A 140 ALPIIDEWLKSS--NLHTRRAATEGLRI-WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP-DLVKI 215 (240)
T ss_dssp THHHHHHHHHCS--SHHHHHHHHHHTCS-GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHhhHH-HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH-HHHHH
Confidence 888888888877 68999988888653 2222222233444555 4456699999999999999988766544 45666
Q ss_pred Hhcc
Q 000159 1051 NLKD 1054 (2013)
Q Consensus 1051 ~l~~ 1054 (2013)
++..
T Consensus 216 ~~~~ 219 (240)
T 3l9t_A 216 ELKN 219 (240)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=88.90 E-value=23 Score=40.89 Aligned_cols=153 Identities=11% Similarity=0.065 Sum_probs=106.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (2013)
+++.......-.+|.+.|.++++++-.. .|..|.++++.+.....|.+..|+......|.+.+.. =..++..
T Consensus 19 ~lln~A~~~~~~~kl~~L~qa~el~~~~----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~l~~~ 90 (257)
T 3gs3_A 19 DWCNELVIASPSTKCELLAKVQETVLGS----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVELLPH 90 (257)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTTT----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHH
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHcc----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 4555444422269999999999987532 3556788888888877899999999999988888733 2357788
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhhHHHHHHHHHHHhccCCCCCChhhhHH
Q 000159 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2013)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2013)
.++.+...|.|..+.|...++.|...++.. +...+. +++ .+..-..+|.|+... + .
T Consensus 91 ~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~---------~l~~i~~~~~-~~~~~~~~W~~m~~l----------K---~ 147 (257)
T 3gs3_A 91 VINVVSMLLRDNSAQVIKRVIQACGSIYKN---------GLQYLCSLME-PGDSAEQAWNILSLI----------K---A 147 (257)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---------HHHHHTTSSS-CCHHHHHHHHHHHHH----------H---H
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---------HHHHHhcCCC-CcchHHHHHHHHHHH----------H---H
Confidence 899999999999999999998888777543 333332 332 122236677777642 1 1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHH
Q 000159 1016 PASIAMTDKSSDVRKAAEACIVEIL 1040 (2013)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~L~~l~ 1040 (2013)
-++..++..+..||-.+.+.+..++
T Consensus 148 ~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 148 QILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCcchHHHHHHHHHHHH
Confidence 2444566778889988887765543
No 115
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.23 E-value=0.53 Score=54.27 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=46.4
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHH
Q 000159 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2013)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp 939 (2013)
..+.|.+|.+|.+++..+ . . ..|...+.|.++.|+..+...+ | +
T Consensus 177 ~ll~D~d~~VR~aaa~~l-----------~----~---~~L~~Ll~D~d~~VR~~aa~~l-------~-----------~ 220 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASRL-----------R----G---DDLLELLHDPDWTVRLAAVEHA-------S-----------L 220 (244)
T ss_dssp GSTTCSSHHHHHHHHHHC-----------C----G---GGGGGGGGCSSHHHHHHHHHHS-------C-----------H
T ss_pred HHHcCCCHHHHHHHHHhC-----------C----H---HHHHHHHcCCCHHHHHHHHHcC-------C-----------H
Confidence 456899999999987652 0 1 2355568999999998776653 3 1
Q ss_pred HHHHHhCCCcHHHHHHHHHHH
Q 000159 940 DILKCLGDNKKHMRECTLTVL 960 (2013)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL 960 (2013)
..+..|.|....||.++...|
T Consensus 221 ~~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 221 EALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHCCCCCHHHHHHHHCCC
T ss_pred HHHHHccCCCHHHHHHHHHHh
Confidence 344556999999999987654
No 116
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=88.11 E-value=3.7 Score=46.66 Aligned_cols=98 Identities=18% Similarity=0.360 Sum_probs=71.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||. .+-.|-+++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 21 ~~~~dw~----~ileicD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWE----SILQICDLIRQ-----GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHH----HHHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 3556885 44456666642 122347899999999999999999999999999999999988643 344555
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000159 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
.|.+.++. ....|++-+...+..|.....
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 54444432 445788888888888887764
No 117
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=87.97 E-value=0.91 Score=49.30 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=63.4
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---CcChhHHHHhhhhhhc------CCChHHHHHHHHHHHHH
Q 000159 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFD------HQDQNVRASSKGLTLEL 195 (2013)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~---~i~~k~il~~l~~ll~------~~d~~VR~~a~~l~~el 195 (2013)
.+..++..|.+.+.|+||+++.-+|..|-.++++=|.. .|.=+.|+..|.+++. ..+..||+.+..++.+-
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 46678888999999999999999999999999986652 2344788999999986 35789999999998887
Q ss_pred HHhhCC
Q 000159 196 CRWIGK 201 (2013)
Q Consensus 196 y~~lG~ 201 (2013)
+...+.
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 777654
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=87.75 E-value=15 Score=44.93 Aligned_cols=142 Identities=8% Similarity=0.087 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhCC
Q 000159 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (2013)
Q Consensus 868 k~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D 947 (2013)
.+|.+.|.++++++-. -.|+.+.++++.+...-.|.+..|+...+.+|.+.+.. -..++..+++.+...|.|
T Consensus 40 ~~Kl~~L~q~~EL~l~----~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d 111 (386)
T 3o2t_A 40 DSKITVLKQVQELIIN----KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRD 111 (386)
T ss_dssp THHHHHHHHHHHHHHT----TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC
Confidence 4799999999998752 24556788999999888999999999999999888753 234567788889999999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhhHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCh
Q 000159 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSS 1026 (2013)
Q Consensus 948 ~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~ 1026 (2013)
..+.|...++.|...++ +.+...+. ++. ....-..+|.|+... +. -|+..++..|.
T Consensus 112 ~d~~V~K~~I~~~tslY---------pl~f~~i~~~~~-~~~~~e~~W~~m~~l----------K~---~Il~~~ds~n~ 168 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLY---------KVALQWMVKSRV-ISELQEACWDMVSAM----------AG---DIILLLDSDND 168 (386)
T ss_dssp SSHHHHHHHHHHHHHHH---------HHHHHHHHHC-C-CCHHHHHHHHHHHHH----------HH---HHHHGGGCSSH
T ss_pred CCHHHHHHHHHHHHHHH---------HHHHHHHhcCCC-cchhHHHHHHHHHHH----------HH---HHHHHhccCCc
Confidence 99999999888887764 33333333 321 123346778777642 11 24444677888
Q ss_pred HHHHHHHHHHHHHH
Q 000159 1027 DVRKAAEACIVEIL 1040 (2013)
Q Consensus 1027 dVR~aA~~~L~~l~ 1040 (2013)
.||-.+.+.+..++
T Consensus 169 GVrl~aiKFle~VI 182 (386)
T 3o2t_A 169 GIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 99988887775543
No 119
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.64 E-value=3.7 Score=44.10 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=61.6
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHh
Q 000159 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSV 476 (2013)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D-s~~~VR~aA~~al~~l~~~~ 476 (2013)
.+..+.+..|..-++++||.+...+|..|..|+.++++..-... -+.++..+++.+.. .++.||+...+.+......+
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 44556666777778899999999999999999999986532111 14566666666654 77899999999999888888
Q ss_pred Cch
Q 000159 477 GMR 479 (2013)
Q Consensus 477 Ge~ 479 (2013)
+..
T Consensus 128 ~~~ 130 (163)
T 1x5b_A 128 QKD 130 (163)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
No 120
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.25 E-value=2.2 Score=45.19 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=63.2
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHHhhhhhhcC------CChHHHHHHHHHHHHH
Q 000159 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (2013)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (2013)
.+..++..|.+.+.|+||+++.-+|..|-.++++=|... |.=+.|+..|.+++.. .+..||+....++.+-
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 466788888999999999999999999999999877632 3447899999999874 5889999998888777
Q ss_pred HHhhCC
Q 000159 196 CRWIGK 201 (2013)
Q Consensus 196 y~~lG~ 201 (2013)
+...+.
T Consensus 115 ~~~f~~ 120 (148)
T 1mhq_A 115 TVWFPE 120 (148)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 666543
No 121
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=85.62 E-value=5 Score=41.94 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=72.2
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhh--HhHHHHH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~L 371 (2013)
+.+.+|.- +.++..+++.. +..-.+.+++|+++|+..|.++...|+.++..+.+.-|..|...+ +.++..|
T Consensus 18 l~~~dw~~----ileicD~I~~~---~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el 90 (140)
T 3ldz_A 18 NTAEDWGL----ILDICDKVGQS---RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEV 90 (140)
T ss_dssp SSSCCHHH----HHHHHHHHTTS---TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHCC---CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 56788863 44455555421 223468899999999999999999999999999999999887543 5666666
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHh
Q 000159 372 LEKLKEKKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 372 L~klkdkk~~V~~aa~~aL~ai~~~ 396 (2013)
.+.++...+.|++.+...+..|...
T Consensus 91 ~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 91 SNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHH
Confidence 6666556778888888888887754
No 122
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=84.03 E-value=8.8 Score=43.74 Aligned_cols=145 Identities=10% Similarity=-0.001 Sum_probs=95.0
Q ss_pred HHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchh-hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC---CC
Q 000159 327 CRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC---LN 400 (2013)
Q Consensus 327 ~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~---~~ 400 (2013)
++.|.+.+. |....+...|+.+|..|+.+-...-.. .-...+|.|+..|+.....+++.+..||..+...+. ..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555666 333378888888999888653221111 122467999999999999999999999999875200 00
Q ss_pred h--HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-------cC---------CCHH
Q 000159 401 L--VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-------ND---------GTPE 460 (2013)
Q Consensus 401 l--~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-------~D---------s~~~ 460 (2013)
+ ...+|.|+..|. ++++.++..+...|..+-.... +.. ..+.-+|.|+..+ .| .+++
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~---i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL---MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH---HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH---HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 1 124677888887 5789999998877776532211 222 2344566666543 12 3779
Q ss_pred HHHHHHHHHHHHHH
Q 000159 461 VRDAAFSVLAAIAK 474 (2013)
Q Consensus 461 VR~aA~~al~~l~~ 474 (2013)
|+..|..||..+..
T Consensus 167 v~~na~~~L~nLss 180 (233)
T 3tt9_A 167 IFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987754
No 123
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=81.88 E-value=4.7 Score=42.76 Aligned_cols=99 Identities=16% Similarity=0.338 Sum_probs=72.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHhChhhHhhh--hhHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (2013)
+.+.||. .+-.|.++++. .+..-.+.+.+|++||.. .|.+++..||.++..+++.+|..|...+ +.|+
T Consensus 29 l~~~Dw~----~ileicD~In~-----~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 29 VQTEDWG----QFMHICDIINT-----TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp CCSCCHH----HHHHHHHHHHH-----STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCccHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 4556896 45556666652 122347899999999984 5889999999999999999999997543 4566
Q ss_pred HH-HHHHhCCC---cHHHHHHHHHHHHHHHHhcCc
Q 000159 939 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVHL 969 (2013)
Q Consensus 939 p~-ll~~L~D~---k~~Vr~aa~~aL~~i~~~~gl 969 (2013)
.. +++.+.++ ...|++-+...+..|.....-
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 54 55555543 346999999999999987753
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=81.05 E-value=6.1 Score=44.64 Aligned_cols=98 Identities=16% Similarity=0.324 Sum_probs=71.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh--hhhHHH
Q 000159 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2013)
Q Consensus 862 l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (2013)
+.+.||.. +-.|-+++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 18 ~~~~dw~~----~leicd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~ 88 (220)
T 1dvp_A 18 RLEPDWPS----ILLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (220)
T ss_dssp CSSCCHHH----HHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCcCHHH----HHHHHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHH
Confidence 34568974 3345555542 122347899999999999999999999999999999999988643 233555
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000159 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (2013)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~g 968 (2013)
.+...+++ ....|++.+...+..|.....
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 89 MFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 55555543 446789888888888887764
No 125
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=79.58 E-value=7.2 Score=44.43 Aligned_cols=109 Identities=10% Similarity=0.024 Sum_probs=77.7
Q ss_pred hHhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000159 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~--~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (2013)
+...+|.+++.+..... .++..+..++..+... .... ...+|.|...|++.++.++..++..|..+....+
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 34568888888877665 7776666778776643 1111 1346888999999999999999988887654322
Q ss_pred h--hHHHHhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Q 000159 436 K--AAVLKVHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 436 ~--~~l~~~l~~l~p~l~k~l~-Ds~~~VR~aA~~al~~l~~~ 475 (2013)
. ..+.. .-.+|.|+++|. ..+.++|+.|..+||.+..+
T Consensus 85 ~nk~~I~~--~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 85 DNKLEVAE--LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 1 11211 346889999997 47899999999999988743
No 126
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=79.51 E-value=9.8 Score=47.25 Aligned_cols=128 Identities=14% Similarity=0.185 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh
Q 000159 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (2013)
Q Consensus 324 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~ 403 (2013)
.+-+.++...+.|..+.|+..|++-|-.+|+. .++..+.-.|...|..-.+.-++.+..+|..+++. ....
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~---Dpk~ 134 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM---DAKG 134 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc---ChHH
Confidence 45677888888899999999999999888866 34677777777778778888899999999999985 3344
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCCCHH
Q 000159 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPE 460 (2013)
Q Consensus 404 il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~ 460 (2013)
.+..++..+.+....+|..++.||..-+...++..+.+-+ .-++..+.+.|.|-..+
T Consensus 135 tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~ 192 (507)
T 3u0r_A 135 TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGE 192 (507)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHH
Confidence 5555554444457899999999999888776655443322 34666778888776554
No 127
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=77.34 E-value=71 Score=38.02 Aligned_cols=202 Identities=11% Similarity=0.130 Sum_probs=125.9
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHhcC---CCCCCCCh----HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcch
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLAST---KRIAPGDF----TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~---pki~~~~~----~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (2013)
.+...+..-+|..|+++..-+..++.. .+....+| .+++..|.+.-.+..+..-.+. .|.+.++ ++
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir-----~e 154 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIR-----HE 154 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHT-----SH
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHH-----hH
Confidence 344556778899999999988887742 22211122 5777888777776654332222 2222221 12
Q ss_pred hhhHh-----HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CCChHhHHHHHHHHhhcCChHHHHHHHHHHH
Q 000159 362 GSSRF-----LLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (2013)
Q Consensus 362 ~~~~~-----llp~LL~klkdkk~~V~~aa~~aL~ai~~~~--------~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~ 428 (2013)
..++. .+-.+++.....+=.|...|..++..++... ....+.++..+..-+.+.|.-+|++++.+|+
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 22221 2224555556666677777777777765430 1346777888888889999999999999999
Q ss_pred HHHHh-cChhHHHHhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch--hHHHHHhhccHHHHHHHHHHHhc
Q 000159 429 FCIET-SSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR--PLERSIEKLDDVRRNKLSEMIAG 502 (2013)
Q Consensus 429 ~~l~~-~~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~--~~~~~l~~Ld~~~~kki~e~~~~ 502 (2013)
.++.. +......+++ +.-+..++.+|.|..+.++-.|+-.|-.|.. -+.+ ++..++ - .-|.|+-+++.+
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA-NP~K~~~I~~IL---~-~Nr~kLl~fl~~ 308 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA-NPNKTQPILDIL---L-KNQAKLIEFLSK 308 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH-CSSCCHHHHHHH---H-HTHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee-CCCCChHHHHHH---H-HHHHHHHHHHHh
Confidence 98764 2233334443 5577899999999999999999988876653 2332 222222 2 234556666654
No 128
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=75.42 E-value=17 Score=45.12 Aligned_cols=146 Identities=11% Similarity=0.062 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHHHHhC
Q 000159 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946 (2013)
Q Consensus 867 Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~ 946 (2013)
-+++.-|-+-|.+... --|..-.+-+.++...+.|....|+.+|++-+..+|+. .++..+.-.|.+.|.
T Consensus 42 ~k~K~LaaQ~I~kffk-----~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLq 110 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFK-----HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHHHHGG-----GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-----hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHh
Confidence 4555555555554432 12333356788899999999999999999998888855 557777888889999
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCC---CChhhhHHH-HHhhcC
Q 000159 947 DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKP-ASIAMT 1022 (2013)
Q Consensus 947 D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~p-l~~~L~ 1022 (2013)
--.+.-+.++.++|..+++.-.-.. +..+...+.+. ...+|..++.||...+-.++.. .+...++.- +.+.|.
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk~t-l~~lf~~i~~~--~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~ 187 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAKGT-LGGLFSQILQG--EDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLE 187 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHS--CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhcChHHH-HHHHHHHHccc--chHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhc
Confidence 8888999999999999987754222 23233333222 3688999999999999887653 345555544 777887
Q ss_pred CCCh
Q 000159 1023 DKSS 1026 (2013)
Q Consensus 1023 D~~~ 1026 (2013)
|-.+
T Consensus 188 DVT~ 191 (507)
T 3u0r_A 188 DVTG 191 (507)
T ss_dssp SCCH
T ss_pred cccH
Confidence 7665
No 129
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=75.01 E-value=26 Score=37.22 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=61.9
Q ss_pred CCChHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHH-HHHHhc---CCCHHHHHHHHHHHHH
Q 000159 398 CLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPI-CMECLN---DGTPEVRDAAFSVLAA 471 (2013)
Q Consensus 398 ~~~l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~-l~k~l~---Ds~~~VR~aA~~al~~ 471 (2013)
..+..+.+..|..-++ ++|+.+...+|..|..|+.++++..-... -+.++.. +++.+. ++...||+...+.+..
T Consensus 48 ~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 48 EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 3556777788888887 59999999999999999999986532211 2456665 666663 4556999999999999
Q ss_pred HHHHhCch
Q 000159 472 IAKSVGMR 479 (2013)
Q Consensus 472 l~~~~Ge~ 479 (2013)
....++..
T Consensus 128 W~~~f~~~ 135 (157)
T 1elk_A 128 WADAFRSS 135 (157)
T ss_dssp HHHHHTTC
T ss_pred HHHHcCCC
Confidence 88888743
No 130
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=74.81 E-value=2.8e+02 Score=38.62 Aligned_cols=170 Identities=10% Similarity=0.126 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHh----cc-----cCHHHHHHHHHHHHHHHHHhhhcchhhhHh
Q 000159 298 KWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLI----TD-----VNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (2013)
Q Consensus 298 kWkeR~eaL~~L~~l~~~--pki~~~~~~~l~~~L~k~l----~D-----~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 366 (2013)
+=..|.=|+..|+..++. ..+...+...|-..|...+ .+ .+..++..-+.++..|++.. |-..+..
T Consensus 74 ~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~---~P~~Wp~ 150 (1073)
T 3gjx_A 74 NMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQE---WPKHWPT 150 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHH---TTTTCTT
T ss_pred CHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHh---ChhhccH
Confidence 445566677777665531 2233333333333333332 22 23455566677777776643 3233455
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHh-c-------------------CCChHhHHHHHHHHhh-cCChHHHHHHHH
Q 000159 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKA-G-------------------CLNLVDVVEDVKTSVK-NKVPLVRSLTLN 425 (2013)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~ai~~~-~-------------------~~~l~~il~~l~~~l~-~Knp~vR~~~l~ 425 (2013)
+++.++..++. +...++.+...|..+..- . +...+.+++.+...++ ..++.+...+++
T Consensus 151 fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~ 229 (1073)
T 3gjx_A 151 FISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLE 229 (1073)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 66666666543 233344444444443322 0 0113345554555554 567888888888
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 426 WVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 426 ~L~~~l~~~~~~~l~~~l~~l~p~l-~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.|..++.=.+-..+.. ..+++.+ ...++ ++++|++|.+||..+...
T Consensus 230 ~L~~~~sWI~i~~i~~--~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 230 TLLRFLNWIPLGYIFE--TKLISTLIYKFLN--VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHTTTSCTHHHHS--SSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCHHHhcc--chHHHHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence 8887665334333321 4577776 57774 678999999999998865
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.22 E-value=23 Score=40.03 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Q 000159 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~-Ds~~~VR~aA~~al~~l~~~ 475 (2013)
..+..+.+..|..-++++||.+...+|..|..|+.+++....... -+.++..|.+++. ..+++||+...+.+......
T Consensus 40 ~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 40 DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 456677888888888999999999999999999999886422111 2444445555543 46789999999999999988
Q ss_pred hCch
Q 000159 476 VGMR 479 (2013)
Q Consensus 476 ~Ge~ 479 (2013)
+...
T Consensus 120 f~~~ 123 (226)
T 3zyq_A 120 FRNE 123 (226)
T ss_dssp TTTC
T ss_pred hCCC
Confidence 8654
No 132
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=73.19 E-value=4.5 Score=53.89 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=57.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhH
Q 000159 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (2013)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2013)
.++|.| .-|++.++..|..++..|..+++......+.-.-+.+.+.+..+|.|++.+||.+|..+|..+...-|.+..
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 456644 558899999999999999998753221122112234556678899999999999999999999888776543
No 133
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=71.98 E-value=41 Score=37.06 Aligned_cols=121 Identities=10% Similarity=0.180 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc------hhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHH
Q 000159 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD------SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (2013)
Q Consensus 868 k~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D------sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~l 941 (2013)
..|.+|++.++. +..+ .+|++.|...+.+ .|..+....++++..|...-.-.+++|+..++|.+
T Consensus 23 ~~r~~aL~sL~~-----D~gL-----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~Lipsv 92 (196)
T 4atg_A 23 DMKDIAIECLEK-----ESGL-----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSL 92 (196)
T ss_dssp TTHHHHHHHHHH-----CSSC-----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCh-----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 448888887763 2333 4555555443322 13444445555555555554556899999999999
Q ss_pred HHHhCCCc---HHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCCCChhhHHHHHHHHH
Q 000159 942 LKCLGDNK---KHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAKLGAEGRKDLFDWLS 998 (2013)
Q Consensus 942 l~~L~D~k---~~Vr~aa~~aL~~i~~~~g--l~~ll~----~l~~~L~~~k~~p~~R~~~l~~L~ 998 (2013)
+.++-.++ ..+|+-|...|..+++..+ ...+-| .+..++.+++.+.....+++..|.
T Consensus 93 LtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~ 158 (196)
T 4atg_A 93 LTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLS 158 (196)
T ss_dssp HHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 99884322 1699999999999998876 233333 344444444334444555554444
No 134
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=68.17 E-value=8.8 Score=40.67 Aligned_cols=106 Identities=12% Similarity=0.161 Sum_probs=70.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCC---Cc
Q 000159 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAK---II 164 (2013)
Q Consensus 94 v~~~LveK~l~~k~~~k~~A~~~ll~~~E~-----~~~~~v~~~L~~~~~-~KnpKv~~~~l~~L~~~l~~fG~~---~i 164 (2013)
-+..+|+|+=+ +...+---+.++.+++. +.+..++..|.+.+. ++||+++.-+|..|-.++++=|.. .|
T Consensus 16 ~~~~~IekATs--~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 16 SVGHLIEKATF--AGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp HHHHHHHHHTC--SSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hHHHHHHHHcC--CCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 35567788533 22211112233333333 346788888988887 479999999999999999987763 23
Q ss_pred ChhHHHHh-hhhhhcCC---ChHHHHHHHHHHHHHHHhhCC
Q 000159 165 PPKRILKM-LPELFDHQ---DQNVRASSKGLTLELCRWIGK 201 (2013)
Q Consensus 165 ~~k~il~~-l~~ll~~~---d~~VR~~a~~l~~ely~~lG~ 201 (2013)
.-+.|+.. |.+++... ...||+....++.+-..+.+.
T Consensus 94 ask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 94 VKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp SSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 44678864 88888643 457999998888777766653
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.86 E-value=32 Score=38.66 Aligned_cols=95 Identities=8% Similarity=0.075 Sum_probs=63.5
Q ss_pred hccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHH
Q 000159 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (2013)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (2013)
+.+.+|..-. +|..+++.. +..-.+.+++|+++|+..|+++...|+.+|+.+.+.-|..|... -+.++..|
T Consensus 18 ~~~~dw~~~l----eicd~i~~~---~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l 90 (220)
T 1dvp_A 18 RLEPDWPSIL----LICDEINQK---DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF 90 (220)
T ss_dssp CSSCCHHHHH----HHHHHHHTT---SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHHHH----HHHHhhcCC---CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHH
Confidence 4568897533 344444321 23456899999999999999999999999999999988888643 22344444
Q ss_pred HHHhcc-CcHHHHHHHHHHHHHHHH
Q 000159 372 LEKLKE-KKPTVAESLTQTLQAMHK 395 (2013)
Q Consensus 372 L~klkd-kk~~V~~aa~~aL~ai~~ 395 (2013)
...+++ ....|++.+.+.+..|..
T Consensus 91 ~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 91 SSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 443332 335566666666666554
No 136
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=65.96 E-value=93 Score=40.36 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=96.2
Q ss_pred hhcc-CCHHHHHHHHHHHHHHhcCCCCCCCChHH-HHHHHHHHhc-c-cCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000159 293 GVKA-TKWSERKDAVAELTKLASTKRIAPGDFTE-VCRTLKKLIT-D-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2013)
Q Consensus 293 ~l~s-~kWkeR~eaL~~L~~l~~~pki~~~~~~~-l~~~L~k~l~-D-~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2013)
++.+ .--.+|++|+..|+.+.+.. +...+. -++.|...+. | .+.-++..++.+|-.+...- ..+..-.
T Consensus 29 Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~--~~~~~~~--- 100 (651)
T 3grl_A 29 RVASSTLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND--EEEEVEE--- 100 (651)
T ss_dssp HHHHCCSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------------
T ss_pred HHhhccchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC--Ccccccc---
Confidence 3444 66778888888888775321 111221 2455555555 3 35555555444444432211 1100000
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh---hhh
Q 000159 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV---HKD 445 (2013)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~---l~~ 445 (2013)
.......+-+..-.+.+.+. .+-++.|+..|++.+-.+|..+++.|..++...+.. ..++ .+.
T Consensus 101 --------~~~~~~~~~~~~~~d~f~~~-----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~~p~ 166 (651)
T 3grl_A 101 --------NSTRQSEDLGSQFTEIFIKQ-----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILVSPM 166 (651)
T ss_dssp ---------------CHHHHHHHHHHHS-----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHSTT
T ss_pred --------cccccchHHHHHHHHHHHcC-----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHhCcc
Confidence 00000111122223444443 355677888889999999999999999988765432 2322 246
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHH
Q 000159 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485 (2013)
Q Consensus 446 l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l 485 (2013)
-++.|+..|.|+...+|..|.-.|..+.+ ++..+.+++
T Consensus 167 gi~~Lv~lL~d~rE~iRneallLL~~Lt~--~n~~iQklV 204 (651)
T 3grl_A 167 GVSRLMDLLADSREVIRNDGVLLLQALTR--SNGAIQKIV 204 (651)
T ss_dssp HHHHHHGGGGCSSHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHhc--CCHHHHHHH
Confidence 78999999999999999999988887765 343344433
No 137
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=65.67 E-value=52 Score=36.24 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=82.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcC--CCCcccHHHHHHHHHHHHHHHHHHcCCCchhh
Q 000159 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML--PGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (2013)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~lv~~L~~~--pgl~DsN~qV~~~~Le~l~~l~~~~~~~~~~~ 681 (2013)
.++.+.+.+ ..|.+|++.|.. + ..+..-.+.+++++... -.++ |..+....++++..++.+-.-+.+.+
T Consensus 14 ~~It~a~~~---~~r~~aL~sL~~---D-~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~lepY 84 (196)
T 4atg_A 14 DKILSMIKS---DMKDIAIECLEK---E-SGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVFIDPY 84 (196)
T ss_dssp HHHHHHHTS---TTHHHHHHHHHH---C-SSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCCCGGG
T ss_pred HHHHHHHHh---HHHHHHHHHHhc---C-CChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCChHHH
Confidence 344455554 458888887762 1 11222234455554321 1123 67778888999999998744445667
Q ss_pred HHHHHHHHHhhhcC-----hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhh-CCChhHHHHHHHHHHH
Q 000159 682 VVLCLLGISERVAD-----IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKD-HKNPKVLSEGILWMVS 744 (2013)
Q Consensus 682 ~~~il~~LveKlgD-----~K~r~~a~e~L~~l~e~~~~~------~Vl~~L~~~l~~-~KnpKv~~~~l~~L~~ 744 (2013)
+..++|.++..+-. ..+|+-|.+.|..++..++.. .|+..+.+.+.+ .++.-.+-+++..|..
T Consensus 85 lH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~ 159 (196)
T 4atg_A 85 LHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI 159 (196)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 77777776655433 358999999999999987742 344444444433 5777788888877643
No 138
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=62.73 E-value=8.3 Score=40.15 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhc-------
Q 000159 305 AVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK------- 376 (2013)
Q Consensus 305 aL~~L~~l~~~pki~~-~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klk------- 376 (2013)
.+++|..+.... + ..+.+|+..|.++|++.+..++..|+++|.+|+..=...|...++.-... ++.+.
T Consensus 31 lm~EIA~~T~~s---~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~-Ik~l~~F~g~~d 106 (140)
T 1vdy_A 31 KLEEICDLLRSS---HVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVA-VRNLFHYKGHPD 106 (140)
T ss_dssp HHHHHHHHHHHS---CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHH-HHTTTTCCCCCC
T ss_pred HHHHHHHHHHhc---chhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHH-HHHHHhcCCCCC
Confidence 455666655211 1 12478999999999999999999999999999976566676555444432 33222
Q ss_pred -----cCcHHHHHHHHHHHHHHHHh
Q 000159 377 -----EKKPTVAESLTQTLQAMHKA 396 (2013)
Q Consensus 377 -----dkk~~V~~aa~~aL~ai~~~ 396 (2013)
+....||+.|.+++..|+..
T Consensus 107 p~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 107 PLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred cccccchhHHHHHHHHHHHHHHhCc
Confidence 22367999999999988754
No 139
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=56.54 E-value=12 Score=39.06 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=66.7
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHH
Q 000159 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2013)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (2013)
..+|++|=.=--.+++|.++.... ....+.+++..|.+||++.+++++..||++|..|+..-...|...++.=+.
T Consensus 19 ATs~d~~~~pgylm~EIA~~T~~s----~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~- 93 (140)
T 1vdy_A 19 VTSDEDKVAPVYKLEEICDLLRSS----HVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV- 93 (140)
T ss_dssp TTCSCSSCCCHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH-
T ss_pred HhcCCCCCCcHHHHHHHHHHHHhc----chhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH-
Confidence 344455544344456666665421 111247899999999999999999999999999997666667655544443
Q ss_pred HHHHhC------C------CcHHHHHHHHHHHHHHHH
Q 000159 941 ILKCLG------D------NKKHMRECTLTVLDAWLA 965 (2013)
Q Consensus 941 ll~~L~------D------~k~~Vr~aa~~aL~~i~~ 965 (2013)
+++.|. | ....||..|.+++..+..
T Consensus 94 ~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 94 AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 344443 2 225799999888877654
No 140
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=54.53 E-value=2.4e+02 Score=33.61 Aligned_cols=124 Identities=14% Similarity=0.064 Sum_probs=82.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHh---ccccCCCCChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~---a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (2013)
.|++.+.+.+...-.=+|.++++++.. -+.-+. . .+++.-|...++.....|++.|+.++..++..-...+.-.
T Consensus 164 ~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs--~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv 240 (339)
T 3dad_A 164 CLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA--H-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLF 240 (339)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH--C-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC--C-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHH
Confidence 345555556777777778888877752 001111 1 4566777777777789999999999999987764443322
Q ss_pred hhh-----------HHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC
Q 000159 934 SKG-----------VLSDILKCLG---DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 983 (2013)
Q Consensus 934 ~~~-----------llp~ll~~L~---D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~ 983 (2013)
.+. .+..++..|. .....+...|+.-+++++..++-..-...+.+.|...
T Consensus 241 ~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~ 304 (339)
T 3dad_A 241 IRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQ 304 (339)
T ss_dssp HHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHc
Confidence 211 1457777886 5778899999999999998887444345677777643
No 141
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=48.48 E-value=1e+02 Score=31.35 Aligned_cols=103 Identities=8% Similarity=0.030 Sum_probs=61.6
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---HHH
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---AVL 440 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---~l~ 440 (2013)
.+.-+-..|..+..++..+.....=|+ .| ....+.|++.+...++.-.+.-|...+=.+..++.++... .+.
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l----~h-~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~ 80 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCI----EN-KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR 80 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHH----HT-GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHH----Hh-HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH
Confidence 345556667777777766665444443 34 3345678888888888777888887777777777765432 233
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
+.+..+++.+...+. ++++|..-.+++...-
T Consensus 81 ~~f~~~l~~~~~~~~--~~~~~~kl~~ll~iW~ 111 (132)
T 4flb_A 81 ESFADVLPEAAALVK--DPSVSKSVERIFKIWE 111 (132)
T ss_dssp HHHHTTHHHHHHTTC--STTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhc
Confidence 333344444444333 4567776666665443
No 142
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=46.72 E-value=1.2e+02 Score=31.74 Aligned_cols=92 Identities=4% Similarity=0.039 Sum_probs=64.1
Q ss_pred cCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcC
Q 000159 377 EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456 (2013)
Q Consensus 377 dkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~D 456 (2013)
.+++.+.....-|+. | .-....|++.+...+..-+|.-|...|=.+..++.+++.......-+.+.+.+......
T Consensus 22 nSk~~I~~LT~~a~~----~-~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~ 96 (144)
T 1sz9_A 22 NSRPIITTLTKLAEE----N-ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLL 96 (144)
T ss_dssp CCHHHHHHHHHHHHH----T-GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHH----H-HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHh
Confidence 556666544333333 2 22346788888888888889999999999998888877543333346677777777777
Q ss_pred CCHHHHHHHHHHHHHHH
Q 000159 457 GTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 457 s~~~VR~aA~~al~~l~ 473 (2013)
.++++|..-.+++.+..
T Consensus 97 ~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 97 VDNTTRTKLINMFKLWL 113 (144)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 78899988888876665
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=45.08 E-value=4.6e+02 Score=31.19 Aligned_cols=131 Identities=10% Similarity=0.084 Sum_probs=83.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHh-----cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh--HHHHhhh
Q 000159 372 LEKLKEKKPTVAESLTQTLQAMHKA-----GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA--AVLKVHK 444 (2013)
Q Consensus 372 L~klkdkk~~V~~aa~~aL~ai~~~-----~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~ 444 (2013)
++-..+...++..-+..|+..++.+ +-++-..++..|..-+.++.+.|=+.++..|..++...... .+.+.++
T Consensus 166 i~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~ 245 (339)
T 3dad_A 166 IRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVN 245 (339)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHH
Confidence 3333444666666677777777655 11112456667777777888999899999999888776321 1111111
Q ss_pred --------hHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhCchh-HHHHHhhccHHHHH-HHHHHHhc
Q 000159 445 --------DYVPICMECLN---DGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRN-KLSEMIAG 502 (2013)
Q Consensus 445 --------~l~p~l~k~l~---Ds~~~VR~aA~~al~~l~~~~Ge~~-~~~~l~~Ld~~~~k-ki~e~~~~ 502 (2013)
.....+++.|. .++.++.-.|...+..+....+++. +..+++.|...-+. .|...+++
T Consensus 246 ~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 246 SVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 12346777776 7899999999999999888877644 66677766654443 34444443
No 144
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=41.92 E-value=2.1e+02 Score=33.83 Aligned_cols=157 Identities=14% Similarity=0.189 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHH-HHhccc--CHHHH--HHHHHHHHHHHHHhhhcchhhhHhHHHHHHH
Q 000159 300 SERKDAVAELTKLAST-KRIAPGDFTEVCRTLK-KLITDV--NIAVA--VEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (2013)
Q Consensus 300 keR~eaL~~L~~l~~~-pki~~~~~~~l~~~L~-k~l~D~--N~~V~--~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (2013)
..|+|-|+-+...++. +... .-...+++.|. .++.|= |+... .+.+.++..+.+.++..+.+++..++..+++
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe 122 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQ-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 122 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHH-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3567777777776632 1100 01233444333 344422 22222 4558889999999999999988888888776
Q ss_pred Hhc-------cCcHHHHHHHHHHHHHHHHhcCCC---------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-
Q 000159 374 KLK-------EKKPTVAESLTQTLQAMHKAGCLN---------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK- 436 (2013)
Q Consensus 374 klk-------dkk~~V~~aa~~aL~ai~~~~~~~---------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~- 436 (2013)
..- +.-|..|.+-..-|.++..+ |.+ +..+++.|.=|.+|-+..|-...++.+..++.+..+
T Consensus 123 ~TL~MI~~df~eyPehR~~Ff~LL~ai~~~-cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~ 201 (321)
T 1w9c_A 123 CTLNMINKDFEEYPEHRTNFFLLLQAVNSH-CFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE 201 (321)
T ss_dssp HHHHHHSSTTTCSHHHHHHHHHHHHHHHHH-CTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 552 46788999999999999988 644 245677788888999999999999998888776531
Q ss_pred hHH-----HHhhhhHHHHHHHHhcCCC
Q 000159 437 AAV-----LKVHKDYVPICMECLNDGT 458 (2013)
Q Consensus 437 ~~l-----~~~l~~l~p~l~k~l~Ds~ 458 (2013)
..+ ..+.-.++.-+...+.|++
T Consensus 202 ~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 202 EAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 111 1233444445555555554
No 145
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=41.29 E-value=3.3e+02 Score=33.32 Aligned_cols=186 Identities=14% Similarity=0.122 Sum_probs=113.7
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChHH-----HHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch-h
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTE-----VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS-G 362 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~~-----l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~-~ 362 (2013)
+.+.+.+.+=.||.-.-.-|..+-. ++. .+.. +-..+..-+- ..+.+-+.+-+.+++.+.+|.-.... -
T Consensus 134 Ll~lfdSeDprER~~LktiLhrIY~--kf~--~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 134 LLELFDSEDPRERDFLKTTLHRIYG--KFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHH--HCH--HHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHH--hhh--hhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Confidence 4456688999998765555555421 000 0111 1112222222 33344566788999999998754443 3
Q ss_pred hhHhHHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000159 363 SSRFLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (2013)
Q Consensus 363 ~~~~llp~LL~klkdkk~~-V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (2013)
+..-+...|+-..+-+.-. -...+..|+..++.+.+.-...++..|+...-..|++=..--++-+..+++..++..+.+
T Consensus 210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~ 289 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 289 (403)
T ss_dssp HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3334455555555655443 346778888888877222223455555554445555544455777888888888888888
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHh
Q 000159 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (2013)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~ 486 (2013)
....+...+.+|+...+-.|-+.|. ..+.++.+..++.
T Consensus 290 i~~~lf~~la~ci~S~hfqVAErAL-------~~wnNe~i~~li~ 327 (403)
T 3fga_B 290 IMEPLFRQLAKCVSSPHFQVAERAL-------YYWNNEYIMSLIS 327 (403)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHH-------GGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-------HHhccHHHHHHHH
Confidence 8899999999999999999966654 3445554444443
No 146
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=40.06 E-value=1.2e+02 Score=36.07 Aligned_cols=118 Identities=14% Similarity=0.215 Sum_probs=85.3
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHh-cCCCC----CCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc---c
Q 000159 289 GFWEGVKATKWSERKDAVAELTKLA-STKRI----APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH---F 360 (2013)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~pki----~~~~~~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~---f 360 (2013)
.|++-+...+...=-+|...++.++ .++.+ ...+|..++..+.+.+...|....+.+++.|++|--. |.. +
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLld-r~N~~vM 246 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLD-RHNFTIM 246 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHS-GGGHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhC-chHHHHH
Confidence 4666677888888888999998876 44433 3358999999999999999999999999999998632 222 2
Q ss_pred hhhh--HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000159 361 SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (2013)
Q Consensus 361 ~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l 408 (2013)
..|+ ..-+..++..|+|+.+.|+-.|.....-++.+ ....+.|...|
T Consensus 247 ~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN-P~K~~~I~~IL 295 (341)
T 1upk_A 247 TKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN-PNKTQPILDIL 295 (341)
T ss_dssp HHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC-SSCCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC-CCCChHHHHHH
Confidence 2443 35667778888888888888887777777766 33344444444
No 147
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=39.47 E-value=1.1e+02 Score=31.77 Aligned_cols=113 Identities=11% Similarity=0.083 Sum_probs=66.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh------HHHHh-
Q 000159 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA------AVLKV- 442 (2013)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~------~l~~~- 442 (2013)
..|+.|.|.++.+...-...|..++....-....|+..+...+..-.|.-|...|=.+..++.++... .+.+.
T Consensus 9 ~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F 88 (145)
T 3d9j_A 9 SELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRF 88 (145)
T ss_dssp HHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHH
Confidence 44566766664455555556665554411234567777777777777888888887777777765431 22222
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HHhCchhHHH
Q 000159 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLER 483 (2013)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~--~~~Ge~~~~~ 483 (2013)
.+.+.+.+.... ...+++|..-.+.+.+.- .+|+.+.+.+
T Consensus 89 ~~~L~~~f~~~~-~~~~~~r~kl~rLl~iW~~r~vF~~~~l~~ 130 (145)
T 3d9j_A 89 SNNIISTFQNLY-RCPGDDKSKIVRVLNLWQKNNVFKSEIIQP 130 (145)
T ss_dssp HHHHHHHHHHHT-SSCGGGHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 233444443333 455889988888887765 3555544433
No 148
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=37.92 E-value=2.2e+02 Score=39.54 Aligned_cols=161 Identities=11% Similarity=0.087 Sum_probs=100.3
Q ss_pred ChHHHHHHHHHHHHHHHhcc--ccCCC-CChhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHhChhhHhhhhhHHHHHH
Q 000159 866 DWKVRLESIEAVNKILEEAN--KRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (2013)
Q Consensus 866 ~Wk~R~eale~l~~il~~a~--~~I~~-~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (2013)
++..|..++-.+..++.... ....+ .....+...|...+...+..-...+|++||.+.. . ..++.+.
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p------~~l~~l~ 477 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----P------NSIKKIQ 477 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----G------GGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----h------hHHHHHH
Confidence 56778888888988887521 11112 1234555555555555555566777777776542 1 2344444
Q ss_pred HHhC-------CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHHhccCCCCCChhhhHH
Q 000159 943 KCLG-------DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2013)
Q Consensus 943 ~~L~-------D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2013)
..+. +....||.+|+.+|..+... ....+-+.+...+.|...++++|..++..|.+.- +. ..++.
T Consensus 478 ~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~------P~-~~~l~ 549 (1056)
T 1lsh_A 478 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESK------PS-VALVS 549 (1056)
T ss_dssp TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC------CC-HHHHH
T ss_pred HhhcCccccccccchHHHHHHHHHHHHhhhh-chHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC------cC-HHHHH
Confidence 4442 12346889999999888632 2345667788888766567999999888876521 12 33444
Q ss_pred HHHhhc-CCCChHHHHHHHHHHHHHHHHcC
Q 000159 1016 PASIAM-TDKSSDVRKAAEACIVEILRAGG 1044 (2013)
Q Consensus 1016 pl~~~L-~D~~~dVR~aA~~~L~~l~~~~G 1044 (2013)
-+...+ .|++..|+......|..+...-.
T Consensus 550 ~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 550 MVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 444444 78999999888877766655443
No 149
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=35.17 E-value=2.1e+02 Score=34.78 Aligned_cols=185 Identities=14% Similarity=0.135 Sum_probs=112.4
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT-----EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~-----~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2013)
+.+.+.+.+=+||.-.-.-|..+-. |+. ++. .+-..+.+.+- +.+.+-+.+.+.+++.+.+|.-..+...
T Consensus 179 Ll~lfdSeDpRERd~LktiLhrIY~--Kf~--~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKee 254 (392)
T 2jak_A 179 LLELFDSEDPRERDFLKTTLHRIYG--KFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 254 (392)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHH--HCG--GGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 4455688999998765555555421 011 111 12223333333 4444567788999999999875443322
Q ss_pred hH-hHHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000159 364 SR-FLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (2013)
Q Consensus 364 ~~-~llp~LL~klkdkk~~-V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (2013)
.+ -+...|+-..+-+.-. -......|+..++.+.+.-...++..|+...---|++=..--++.|..+++..++..+.+
T Consensus 255 hk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~ 334 (392)
T 2jak_A 255 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 334 (392)
T ss_dssp HHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 22 2444555555554432 345677788887776222223455555544444444434456788888999888888888
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHH
Q 000159 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485 (2013)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l 485 (2013)
....+...+.+|++..+-.|-+.|. ..+.++.+..++
T Consensus 335 i~~~lF~~la~ci~S~hfqVAErAL-------~~wnNe~i~~li 371 (392)
T 2jak_A 335 IMEPLFRQLAKCVSSPHFQVAERAL-------YYWNNEYIMSLI 371 (392)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHH-------GGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHH-------HHhCcHHHHHHH
Confidence 8999999999999999999966654 345555444333
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=33.06 E-value=94 Score=38.83 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHHHHHhcChhH--HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000159 415 KVPLVRSLTLNWVTFCIETSSKAA--VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2013)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~--l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~ 475 (2013)
.+|.+-.=+|.=++.++..+|... +.+ + ..-..++++|++.|++||..|..|+..+|.+
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~-l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDK-T-GGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHH-H-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHH-c-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 357777777788888888777542 222 1 1345789999999999999999999998854
No 151
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=31.82 E-value=5.3e+02 Score=30.43 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=54.3
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHH---HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000159 414 NKVPLVRSLTLNWVTFCIETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~---~~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
+..|.-|.+-..+|..+...+-.+.+. ...+.++..++=+..++.++|-+.|..++-.+.+-+.
T Consensus 133 ~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 133 EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 467999999999999999888665443 4568899999999999999999999999988887764
No 152
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=30.41 E-value=3.4e+02 Score=33.72 Aligned_cols=186 Identities=14% Similarity=0.125 Sum_probs=112.3
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch-h
Q 000159 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT-----EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS-G 362 (2013)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~pki~~~~~~-----~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~-~ 362 (2013)
+.+.+.+.+=.||.-.-.-|..+-. ++. ++. .+-..+..-+- ..+.+-+.+.+.+++.+.+|.--.+. -
T Consensus 167 Ll~lfdSeDpRERd~LktiLhrIY~--Kf~--~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 167 LLELFDSEDPRERDFLKTTLHRIYG--KFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHH--SCT--TTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 4455688999998765555555532 111 121 12222223332 33444567788888888888653333 2
Q ss_pred hhHhHHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000159 363 SSRFLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (2013)
Q Consensus 363 ~~~~llp~LL~klkdkk~~-V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (2013)
+..-+...|+-..+-+.-. -......|+..++.+.+.-...++..|+...---|++=..--++.|..+++..++..+.+
T Consensus 243 hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~ 322 (449)
T 2npp_B 243 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 322 (449)
T ss_dssp HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3333445555555555432 355677888888876222223455555544444554444455777888888888888888
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHh
Q 000159 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (2013)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~ 486 (2013)
....+...+.+|++..+-.|-+.|. ..+.++.+..++.
T Consensus 323 i~~~lF~~la~ci~S~hfqVAErAL-------~~w~N~~i~~li~ 360 (449)
T 2npp_B 323 IMEPLFRQLAKCVSSPHFQVAERAL-------YYWNNEYIMSLIS 360 (449)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHH-------GGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-------HHHCCHHHHHHHH
Confidence 8899999999999999999966654 3455554444443
No 153
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=30.36 E-value=2.6e+02 Score=33.98 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000159 381 TVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (2013)
Q Consensus 381 ~V~~aa~~aL~ai~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (2013)
.+...+..||.+++.+ ..++ +..+..|..++.++++.+|..+++.|+.+..
T Consensus 135 ~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~ 191 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI 191 (383)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 5566778888888765 2222 3456778889999999999999999986443
No 154
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=25.21 E-value=2e+02 Score=29.23 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=44.8
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000159 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (2013)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~ 434 (2013)
-+..+-..|..|..++..+.....=|+. | ....+.+++.+...++.-.+.-|...+=.+..++.++
T Consensus 5 ~~~~l~~~L~~L~~s~~sI~~~s~w~l~----~-~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 5 SESALEKKLSELSNSQQSVQTLSLWLIH----H-RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNS 70 (135)
T ss_dssp CHHHHHHHHHHCCSSTTHHHHHHHHHHH----T-GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccccHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 3455667778888887777765544443 4 3345678888888887767777877777777776655
No 155
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=24.01 E-value=2.3e+02 Score=35.47 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=56.0
Q ss_pred ccCCCCChhhHHHHHHhccc----------chhHHHHHHHHHHHHHHHHHhChhhHhhhhh--HHHHHHHHhCCCcHHHH
Q 000159 886 KRIQPAGTGELFGGLRGRLY----------DSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMR 953 (2013)
Q Consensus 886 ~~I~~~~~~eL~~~L~~rL~----------DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr 953 (2013)
.++..++ .++++.|...|. ..++.+..-||+-||+++.....+ +..+.. .=..+++.+.+.++.||
T Consensus 387 ~kf~e~~-~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 387 DEFKKDN-YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp GGGSSGG-GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHHhcc-hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 3444454 677777777774 236888899999999999887433 122222 23466788889999999
Q ss_pred HHHHHHHHHHHHh
Q 000159 954 ECTLTVLDAWLAA 966 (2013)
Q Consensus 954 ~aa~~aL~~i~~~ 966 (2013)
-.|..|+..|+.+
T Consensus 465 ~~AL~avQklm~~ 477 (480)
T 1ho8_A 465 YEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888754
No 156
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=23.86 E-value=8.6e+02 Score=27.82 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhC
Q 000159 443 HKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKSVG 477 (2013)
Q Consensus 443 l~~l~p~l~k~l~-Ds~~~VR~aA~~al~~l~~~~G 477 (2013)
-..++..|...+. +-+++|.+|=.++++.+...+.
T Consensus 244 ~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~l~ 279 (283)
T 1c7c_A 244 SHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLT 279 (283)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455556666664 6778888888888888876654
No 157
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=23.50 E-value=1.6e+03 Score=30.88 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=75.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-------hhHHHHHHHHHHHHHHHHHhChh
Q 000159 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-------SNKNLVMATLITLGAVASAMGPA 929 (2013)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~il~~a~~~I~~~~~~eL~~~L~~rL~D-------sN~~V~~~Al~~l~~La~alg~~ 929 (2013)
.+.+.++..+...+.-+|..|+.+- ..+.+..|.+.+.. ....|+..|+..+..++.
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g-----------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----- 507 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAG-----------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----- 507 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-----------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG-----
T ss_pred HHHHHHhcCChHHHHHHHHHhhccC-----------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh-----
Confidence 3444455556666667777666542 12345566665531 234677778777666652
Q ss_pred hHhhhhhHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000159 930 VEKSSKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2013)
Q Consensus 930 ~~~~~~~llp~ll~~L~--D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2013)
.+-+.+-+.++..+. .....||-+|...| ++..+...++..|...+.... +.+++..+..+|...
T Consensus 508 --~~p~~v~~il~~i~~n~~e~~EvRiaA~~~L---m~t~P~~~~l~~ia~~l~~E~-~~QV~sfv~S~l~sl 574 (1056)
T 1lsh_A 508 --RDPRKVQEIVLPIFLNVAIKSELRIRSCIVF---FESKPSVALVSMVAVRLRREP-NLQVASFVYSQMRSL 574 (1056)
T ss_dssp --TCHHHHHHHHHHHHHCTTSCHHHHHHHHHHH---HHTCCCHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred --hchHHHHHHHHHHhcCCCCChHHHHHHHHHH---HHHCcCHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHH
Confidence 233345566667774 45567999865444 565666678888888888643 678888888888653
No 158
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.10 E-value=4.4e+02 Score=27.25 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC
Q 000159 124 EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK 162 (2013)
Q Consensus 124 ~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~ 162 (2013)
.....|++.+.+-+..-+|......|-.+..++++.|..
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~ 77 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSP 77 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccch
Confidence 345788899988888889999999999999999999863
No 159
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.05 E-value=4e+02 Score=26.95 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCCChHhHHH---HHHHHhh---c
Q 000159 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSVK---N 414 (2013)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~ai~~~~~~~l~~il~---~l~~~l~---~ 414 (2013)
..+|++|+..|.. + .|...++...+..-=|++ ...++.+...|..++..+-.+.+++.. .++..+. -
T Consensus 23 ~~Ea~~cl~eL~~---p---~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~l 96 (129)
T 2nsz_A 23 ISEAEHCLKELEV---P---HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINL 96 (129)
T ss_dssp HHHHHHHHHHHTC---G---GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---C---ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhhc
Confidence 4688899988751 2 234455555555555565 477888888898888654566666643 3444443 3
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 000159 415 KVPLVRSLTLNWVTFCIET 433 (2013)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~ 433 (2013)
..|........|+++++..
T Consensus 97 DiP~a~~~l~~~v~~ai~~ 115 (129)
T 2nsz_A 97 DVPHSYSVLERFVEECFQA 115 (129)
T ss_dssp HSTTHHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHHC
Confidence 6799999999999988864
No 160
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=21.04 E-value=3.1e+02 Score=28.29 Aligned_cols=104 Identities=9% Similarity=0.036 Sum_probs=57.8
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHhcCh---hHH
Q 000159 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIETSSK---AAV 439 (2013)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il~~l~~~l~~K--np~vR~~~l~~L~~~l~~~~~---~~l 439 (2013)
+.-+-..|..|.+++..|..+. ..++.+ ....+.+++.+...+... ++.-|...+=.+..++.++.. ..+
T Consensus 5 ~~~l~~kL~~L~~sq~sIq~~s----~W~l~h-~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f 79 (142)
T 2km4_A 5 SEQFTTKLNTLEDSQESISSAS----KWLLLQ-YRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQF 79 (142)
T ss_dssp HHHHHHHHHTCCSCHHHHHHHH----HHHHTC-GGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHH
T ss_pred HHHHHHHHHhccccHHHHHHHH----HHHHHh-hhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHH
Confidence 3445566777777766655433 233333 344567778777777765 556666666555566665432 122
Q ss_pred HHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000159 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2013)
Q Consensus 440 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~al~~l~ 473 (2013)
...+ +.+.+++.......++++|....++|...-
T Consensus 80 ~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWe 114 (142)
T 2km4_A 80 QDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILK 114 (142)
T ss_dssp HHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2222 222333333334457888888777776553
No 161
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.94 E-value=3.8e+02 Score=28.05 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCCChHhHHH---HHHHHhh---c
Q 000159 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSVK---N 414 (2013)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~ai~~~~~~~l~~il~---~l~~~l~---~ 414 (2013)
..+|++|+..|.. + .|...++..++...=|++ ...++.+...|..++..+..+.+++.. .++..+. -
T Consensus 25 ~~EA~~cl~EL~~---p---~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~l 98 (152)
T 2ion_A 25 ISEAEHCLKELEV---P---HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINL 98 (152)
T ss_dssp HHHHHHHHHHHTC---G---GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---C---cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhcc
Confidence 4688899988742 2 233455555555555554 677888989998888664566666643 3444443 3
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 000159 415 KVPLVRSLTLNWVTFCIET 433 (2013)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~ 433 (2013)
..|........|+.+++..
T Consensus 99 DiP~A~~~la~~v~~ai~~ 117 (152)
T 2ion_A 99 DVPHSYSVLERFVEECFQA 117 (152)
T ss_dssp HSTTHHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHHC
Confidence 6788998888888888764
No 162
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.33 E-value=2.8e+02 Score=29.52 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhh---cC
Q 000159 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVK---NK 415 (2013)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ai~~~~~~~l~~il---~~l~~~l~---~K 415 (2013)
..+|+.|+..|.. ..|...++..++..-=|+|..-|+.+...|..++.. ..+.+++. ..++..+. -.
T Consensus 26 ~~Ea~~~l~eL~~------p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~-~ls~~~i~~Gf~~lle~ldDl~iD 98 (165)
T 2rg8_A 26 TNEVAEMLRDLNL------GEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGT-VMSTTDVEKSFDKLLKDLPELALD 98 (165)
T ss_dssp HHHHHHHHHHHTC------SGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTT-TBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhChhhccc
Confidence 3567788877641 235666777777777788999999999999888653 56667764 34444444 36
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 000159 416 VPLVRSLTLNWVTFCIET 433 (2013)
Q Consensus 416 np~vR~~~l~~L~~~l~~ 433 (2013)
.|.+......|+++++..
T Consensus 99 iP~a~~~la~fiarav~d 116 (165)
T 2rg8_A 99 TPRAPQLVGQFIARAVGD 116 (165)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHc
Confidence 799999999999998864
Done!