Query 000160
Match_columns 1992
No_of_seqs 590 out of 2706
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 21:16:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0391 SNF2 family DNA-depend 100.0 5E-211 1E-215 1920.9 60.7 1201 25-1372 193-1572(1958)
2 KOG0385 Chromatin remodeling c 100.0 6E-120 1E-124 1100.0 44.5 510 447-1203 159-671 (971)
3 KOG0388 SNF2 family DNA-depend 100.0 9E-116 2E-120 1045.2 42.8 620 441-1153 554-1184(1185)
4 KOG0389 SNF2 family DNA-depend 100.0 3E-105 7E-110 976.0 41.2 517 444-1148 387-913 (941)
5 KOG0384 Chromodomain-helicase 100.0 5E-104 1E-108 998.7 40.3 466 448-1149 363-837 (1373)
6 KOG0387 Transcription-coupled 100.0 9E-100 2E-104 930.0 40.4 488 445-1166 196-700 (923)
7 KOG0386 Chromatin remodeling c 100.0 1.8E-99 4E-104 942.6 31.7 517 444-1206 383-911 (1157)
8 PLN03142 Probable chromatin-re 100.0 3.2E-95 7E-100 956.4 53.4 512 445-1206 160-673 (1033)
9 KOG0392 SNF2 family DNA-depend 100.0 5.7E-91 1.2E-95 873.5 41.2 495 445-1165 966-1496(1549)
10 KOG1002 Nucleotide excision re 100.0 2E-78 4.4E-83 706.2 37.7 556 445-1164 175-790 (791)
11 KOG0390 DNA repair protein, SN 100.0 1.9E-75 4.2E-80 738.7 42.0 497 446-1165 230-749 (776)
12 KOG4439 RNA polymerase II tran 100.0 8.2E-75 1.8E-79 700.6 37.3 518 441-1164 312-900 (901)
13 KOG1015 Transcription regulato 100.0 6.3E-72 1.4E-76 682.8 33.9 598 444-1169 658-1322(1567)
14 COG0553 HepA Superfamily II DN 100.0 3E-71 6.4E-76 744.8 39.2 494 449-1163 333-863 (866)
15 KOG1001 Helicase-like transcri 100.0 1E-59 2.2E-64 601.1 23.5 531 427-1145 121-672 (674)
16 KOG1016 Predicted DNA helicase 100.0 6.5E-59 1.4E-63 559.6 25.9 536 450-1147 250-873 (1387)
17 KOG1000 Chromatin remodeling p 100.0 8.8E-55 1.9E-59 510.9 32.5 422 448-1141 192-621 (689)
18 PRK04914 ATP-dependent helicas 100.0 4.8E-53 1.1E-57 556.6 36.0 430 451-1148 149-630 (956)
19 KOG0383 Predicted helicase [Ge 100.0 3E-54 6.4E-59 542.9 9.9 383 453-1077 294-696 (696)
20 PF00176 SNF2_N: SNF2 family N 100.0 6.3E-45 1.4E-49 430.8 24.4 277 458-744 1-299 (299)
21 KOG0298 DEAD box-containing he 100.0 4.4E-41 9.5E-46 429.7 23.5 259 475-746 376-693 (1394)
22 TIGR00603 rad25 DNA repair hel 100.0 4.6E-36 9.9E-41 385.1 36.8 342 452-1132 253-616 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 8.9E-31 1.9E-35 350.0 42.2 460 453-1140 14-496 (773)
24 PHA02558 uvsW UvsW helicase; P 99.9 1E-23 2.2E-28 269.1 34.7 127 997-1124 329-456 (501)
25 COG1061 SSL2 DNA or RNA helica 99.9 1.3E-23 2.8E-28 263.8 33.5 364 450-1134 32-405 (442)
26 COG1111 MPH1 ERCC4-like helica 99.9 3.3E-22 7.2E-27 241.2 40.7 150 993-1147 345-505 (542)
27 KOG1123 RNA polymerase II tran 99.9 1.1E-21 2.4E-26 232.5 20.8 355 437-1129 283-659 (776)
28 PRK11776 ATP-dependent RNA hel 99.8 2.1E-18 4.6E-23 218.5 32.3 121 997-1123 229-349 (460)
29 PTZ00110 helicase; Provisional 99.8 2.2E-18 4.8E-23 222.0 32.0 124 996-1123 361-484 (545)
30 TIGR00614 recQ_fam ATP-depende 99.8 2.2E-18 4.7E-23 219.0 28.8 105 1011-1117 225-329 (470)
31 PLN00206 DEAD-box ATP-dependen 99.8 6.4E-18 1.4E-22 216.9 29.0 122 998-1123 353-475 (518)
32 PRK11192 ATP-dependent RNA hel 99.8 1.2E-17 2.7E-22 210.1 31.0 116 997-1116 232-347 (434)
33 PRK01297 ATP-dependent RNA hel 99.8 1.5E-17 3.3E-22 211.6 31.8 121 997-1123 322-442 (475)
34 PRK04537 ATP-dependent RNA hel 99.8 2.1E-17 4.4E-22 213.9 31.5 120 997-1122 244-363 (572)
35 PRK04837 ATP-dependent RNA hel 99.8 1.4E-17 3E-22 209.0 28.5 121 996-1122 241-361 (423)
36 PRK10590 ATP-dependent RNA hel 99.8 2.6E-17 5.5E-22 208.5 29.6 115 1012-1132 245-359 (456)
37 PTZ00424 helicase 45; Provisio 99.8 2.9E-17 6.4E-22 204.2 29.0 109 1012-1124 267-375 (401)
38 KOG0354 DEAD-box like helicase 99.8 1.5E-16 3.2E-21 202.6 35.2 145 993-1145 392-550 (746)
39 PRK11634 ATP-dependent RNA hel 99.8 8.3E-17 1.8E-21 209.7 32.1 115 997-1115 232-346 (629)
40 TIGR01389 recQ ATP-dependent D 99.8 2.6E-17 5.6E-22 214.7 26.6 102 1012-1115 224-325 (591)
41 PRK11057 ATP-dependent DNA hel 99.8 6.1E-17 1.3E-21 211.3 28.1 102 1011-1114 235-336 (607)
42 TIGR00643 recG ATP-dependent D 99.8 2.1E-16 4.7E-21 207.0 30.7 159 451-617 232-399 (630)
43 PRK11448 hsdR type I restricti 99.7 3.3E-16 7.2E-21 213.0 31.5 106 1012-1120 698-815 (1123)
44 PRK10917 ATP-dependent DNA hel 99.7 1.1E-15 2.4E-20 201.8 30.4 156 451-616 258-421 (681)
45 TIGR00580 mfd transcription-re 99.7 1.1E-15 2.4E-20 204.9 29.0 109 1011-1123 659-770 (926)
46 PLN03137 ATP-dependent DNA hel 99.7 1.9E-15 4.2E-20 199.8 28.0 105 1012-1118 680-784 (1195)
47 PRK10689 transcription-repair 99.7 2.1E-15 4.6E-20 205.9 28.6 106 1012-1121 809-917 (1147)
48 PRK13767 ATP-dependent helicas 99.7 6.5E-15 1.4E-19 198.9 32.1 112 1005-1118 277-395 (876)
49 TIGR03817 DECH_helic helicase/ 99.7 1.4E-14 3E-19 192.4 33.2 117 1011-1131 270-394 (742)
50 PRK02362 ski2-like helicase; P 99.6 4.4E-14 9.6E-19 188.7 29.5 150 454-615 23-182 (737)
51 KOG0331 ATP-dependent RNA heli 99.6 1.7E-14 3.7E-19 179.5 23.5 120 995-1116 323-443 (519)
52 PRK01172 ski2-like helicase; P 99.6 7.5E-14 1.6E-18 185.0 30.3 149 453-614 21-179 (674)
53 cd00079 HELICc Helicase superf 99.6 2.9E-15 6.4E-20 155.9 12.1 120 996-1117 12-131 (131)
54 PF04851 ResIII: Type III rest 99.6 6.7E-15 1.5E-19 161.9 14.4 154 453-615 2-183 (184)
55 TIGR01587 cas3_core CRISPR-ass 99.6 2E-13 4.4E-18 167.7 28.4 132 997-1134 208-352 (358)
56 COG0513 SrmB Superfamily II DN 99.6 2.9E-13 6.2E-18 173.7 29.2 132 996-1134 259-390 (513)
57 PRK00254 ski2-like helicase; P 99.6 3.4E-13 7.3E-18 179.9 30.7 148 453-614 22-179 (720)
58 KOG0330 ATP-dependent RNA heli 99.6 2.5E-13 5.3E-18 159.9 23.1 124 997-1126 287-410 (476)
59 TIGR03714 secA2 accessory Sec 99.6 4.6E-13 1E-17 174.2 27.9 129 994-1132 406-543 (762)
60 TIGR02621 cas3_GSU0051 CRISPR- 99.6 6.8E-13 1.5E-17 174.1 29.2 105 1010-1119 270-390 (844)
61 TIGR00348 hsdR type I site-spe 99.5 9.1E-12 2E-16 164.4 30.5 158 451-617 235-405 (667)
62 PRK09200 preprotein translocas 99.5 1.2E-11 2.6E-16 162.5 30.8 131 994-1133 410-548 (790)
63 smart00487 DEXDc DEAD-like hel 99.5 6.1E-13 1.3E-17 146.3 15.2 160 452-618 6-174 (201)
64 KOG0350 DEAD-box ATP-dependent 99.4 6.4E-12 1.4E-16 151.7 22.9 129 1001-1137 420-552 (620)
65 PHA02653 RNA helicase NPH-II; 99.4 3.3E-11 7.1E-16 157.6 31.3 126 1011-1145 394-533 (675)
66 PRK09401 reverse gyrase; Revie 99.4 7.8E-12 1.7E-16 171.8 23.9 102 997-1107 316-430 (1176)
67 TIGR00963 secA preprotein tran 99.4 2.9E-11 6.3E-16 156.8 27.6 131 995-1134 388-525 (745)
68 cd00046 DEXDc DEAD-like helica 99.4 1.4E-12 3.1E-17 135.1 12.6 136 475-614 2-144 (144)
69 PF00271 Helicase_C: Helicase 99.4 3.8E-13 8.3E-18 129.3 7.5 78 1030-1109 1-78 (78)
70 PRK12898 secA preprotein trans 99.4 5E-10 1.1E-14 144.8 35.4 132 994-1134 455-594 (656)
71 PRK09751 putative ATP-dependen 99.4 4.4E-11 9.5E-16 165.2 27.3 96 1011-1108 243-371 (1490)
72 TIGR01054 rgy reverse gyrase. 99.3 7.7E-11 1.7E-15 162.4 23.0 129 453-590 77-213 (1171)
73 KOG4284 DEAD box protein [Tran 99.3 5.6E-11 1.2E-15 146.1 18.9 122 997-1123 259-380 (980)
74 PRK05580 primosome assembly pr 99.3 3.3E-10 7.1E-15 150.0 26.4 153 452-615 142-305 (679)
75 smart00490 HELICc helicase sup 99.3 1.1E-11 2.4E-16 118.4 8.9 81 1027-1109 2-82 (82)
76 TIGR03158 cas3_cyano CRISPR-as 99.3 3.5E-10 7.7E-15 139.6 24.2 85 1011-1106 271-357 (357)
77 KOG0335 ATP-dependent RNA heli 99.3 3.1E-10 6.6E-15 140.0 22.1 149 996-1156 314-469 (482)
78 COG1201 Lhr Lhr-like helicases 99.2 2.1E-09 4.5E-14 141.3 29.7 122 1006-1133 247-370 (814)
79 COG0514 RecQ Superfamily II DN 99.2 9.5E-10 2.1E-14 140.0 24.7 107 1012-1122 230-336 (590)
80 PRK13104 secA preprotein trans 99.2 2.7E-09 5.9E-14 140.5 29.1 132 994-1134 426-595 (896)
81 KOG0343 RNA Helicase [RNA proc 99.2 8.7E-10 1.9E-14 134.5 22.4 133 997-1136 300-434 (758)
82 COG1200 RecG RecG-like helicas 99.2 2.5E-09 5.5E-14 135.8 26.3 161 451-620 259-427 (677)
83 PRK09694 helicase Cas3; Provis 99.2 3.9E-09 8.4E-14 141.5 29.1 99 1010-1111 558-665 (878)
84 PRK14701 reverse gyrase; Provi 99.2 1.6E-09 3.4E-14 152.5 25.4 130 454-590 79-214 (1638)
85 KOG0348 ATP-dependent RNA heli 99.2 9.7E-10 2.1E-14 133.9 19.8 118 999-1118 410-551 (708)
86 KOG0345 ATP-dependent RNA heli 99.2 5.1E-09 1.1E-13 126.6 25.0 120 996-1119 241-362 (567)
87 COG4096 HsdR Type I site-speci 99.1 2.8E-10 6.2E-15 145.6 14.8 156 447-616 158-322 (875)
88 cd00268 DEADc DEAD-box helicas 99.1 5.1E-10 1.1E-14 126.6 15.2 155 454-615 21-185 (203)
89 KOG0339 ATP-dependent RNA heli 99.1 4E-09 8.7E-14 127.7 22.7 155 996-1155 453-614 (731)
90 COG1205 Distinct helicase fami 99.1 8.2E-09 1.8E-13 138.8 28.0 133 996-1132 290-431 (851)
91 TIGR01970 DEAH_box_HrpB ATP-de 99.1 3.5E-09 7.5E-14 141.8 23.4 108 1012-1124 209-337 (819)
92 COG1204 Superfamily II helicas 99.1 3E-09 6.6E-14 141.1 22.5 148 454-613 31-189 (766)
93 KOG0338 ATP-dependent RNA heli 99.1 1.7E-08 3.7E-13 122.7 26.4 123 1001-1131 417-539 (691)
94 PRK13107 preprotein translocas 99.1 6.1E-08 1.3E-12 127.8 31.5 131 994-1133 431-598 (908)
95 TIGR00595 priA primosomal prot 99.1 1.5E-08 3.2E-13 130.2 25.3 97 1025-1123 271-383 (505)
96 KOG0340 ATP-dependent RNA heli 99.0 2.9E-08 6.2E-13 116.9 23.9 120 995-1116 236-357 (442)
97 PRK12906 secA preprotein trans 99.0 4.1E-08 8.9E-13 129.1 27.8 132 995-1135 423-562 (796)
98 PRK12904 preprotein translocas 99.0 1E-07 2.2E-12 126.0 31.0 132 994-1134 412-581 (830)
99 PF00270 DEAD: DEAD/DEAH box h 99.0 1.9E-09 4.2E-14 117.7 12.9 157 457-621 2-168 (169)
100 COG4889 Predicted helicase [Ge 99.0 3.7E-09 8E-14 133.4 16.8 169 442-615 149-351 (1518)
101 KOG0342 ATP-dependent RNA heli 99.0 8.7E-09 1.9E-13 125.5 17.0 128 997-1131 316-443 (543)
102 PRK12900 secA preprotein trans 98.9 7.1E-07 1.5E-11 118.4 31.5 131 995-1134 581-719 (1025)
103 PRK11664 ATP-dependent RNA hel 98.9 5.6E-08 1.2E-12 130.7 22.0 113 1012-1126 212-342 (812)
104 PF11496 HDA2-3: Class II hist 98.8 7.7E-08 1.7E-12 115.5 16.9 141 993-1134 93-256 (297)
105 KOG0347 RNA helicase [RNA proc 98.8 1.7E-08 3.6E-13 123.7 10.9 106 1014-1123 465-570 (731)
106 COG1202 Superfamily II helicas 98.8 1.3E-07 2.8E-12 116.5 18.0 107 1014-1123 442-553 (830)
107 KOG0328 Predicted ATP-dependen 98.8 2.1E-08 4.6E-13 114.6 10.7 123 997-1125 253-375 (400)
108 PRK12899 secA preprotein trans 98.8 4.7E-06 1E-10 110.6 33.3 130 995-1133 551-688 (970)
109 COG1197 Mfd Transcription-repa 98.8 5.3E-07 1.2E-11 120.7 24.8 158 453-620 593-758 (1139)
110 KOG0333 U5 snRNP-like RNA heli 98.7 7.3E-08 1.6E-12 117.9 12.0 143 994-1146 501-643 (673)
111 COG4098 comFA Superfamily II D 98.6 3.8E-05 8.3E-10 91.0 31.4 147 451-615 94-244 (441)
112 PRK11131 ATP-dependent RNA hel 98.6 1.2E-06 2.7E-11 120.3 22.0 107 1012-1125 286-413 (1294)
113 KOG0952 DNA/RNA helicase MER3/ 98.6 5.5E-06 1.2E-10 108.6 26.0 159 468-641 121-307 (1230)
114 KOG0334 RNA helicase [RNA proc 98.6 1.5E-06 3.3E-11 114.5 21.3 123 995-1122 597-719 (997)
115 TIGR00631 uvrb excinuclease AB 98.6 1E-06 2.2E-11 116.3 20.0 126 994-1124 424-554 (655)
116 COG0556 UvrB Helicase subunit 98.6 2.7E-05 5.9E-10 96.6 29.7 214 995-1219 429-647 (663)
117 PRK12326 preprotein translocas 98.6 6E-06 1.3E-10 107.2 25.1 132 994-1134 409-555 (764)
118 COG1203 CRISPR-associated heli 98.6 6.2E-06 1.3E-10 110.9 25.3 123 1010-1137 438-566 (733)
119 PRK13103 secA preprotein trans 98.5 1.7E-05 3.6E-10 105.5 28.1 131 994-1133 431-598 (913)
120 PRK05298 excinuclease ABC subu 98.5 1.2E-06 2.6E-11 116.2 16.8 124 995-1123 429-557 (652)
121 PF13872 AAA_34: P-loop contai 98.5 2.2E-06 4.7E-11 101.9 17.1 259 420-708 7-302 (303)
122 KOG0332 ATP-dependent RNA heli 98.4 8.6E-07 1.9E-11 105.2 11.0 125 996-1125 316-446 (477)
123 KOG0336 ATP-dependent RNA heli 98.4 1.1E-06 2.3E-11 104.9 10.7 120 991-1113 445-564 (629)
124 KOG0351 ATP-dependent DNA heli 98.4 9.5E-06 2.1E-10 109.5 20.3 106 1011-1118 484-589 (941)
125 PLN03212 Transcription repress 98.3 9.9E-07 2.1E-11 101.0 7.9 74 1590-1692 25-99 (249)
126 KOG0341 DEAD-box protein abstr 98.3 4.5E-06 9.9E-11 99.0 11.8 131 995-1132 407-537 (610)
127 KOG0048 Transcription factor, 98.2 9.9E-07 2.1E-11 103.4 5.8 82 1590-1700 9-91 (238)
128 PRK12903 secA preprotein trans 98.2 0.00031 6.8E-09 92.9 27.1 134 993-1135 407-548 (925)
129 PF00249 Myb_DNA-binding: Myb- 98.2 1.8E-06 3.9E-11 76.4 4.6 47 1590-1646 1-48 (48)
130 KOG0344 ATP-dependent RNA heli 98.2 9.7E-06 2.1E-10 101.7 12.1 147 994-1154 371-518 (593)
131 KOG0326 ATP-dependent RNA heli 98.1 3.9E-06 8.5E-11 97.9 7.0 112 995-1110 307-418 (459)
132 PLN03091 hypothetical protein; 98.1 4.1E-06 8.8E-11 102.2 6.5 81 1590-1699 14-95 (459)
133 KOG0327 Translation initiation 98.1 1.2E-05 2.6E-10 96.8 9.9 128 997-1134 252-379 (397)
134 PF13921 Myb_DNA-bind_6: Myb-l 98.1 2.8E-06 6.2E-11 78.4 3.6 43 1593-1646 1-43 (60)
135 smart00717 SANT SANT SWI3, AD 98.1 3.5E-06 7.6E-11 73.2 4.0 47 1590-1647 1-48 (49)
136 PRK15483 type III restriction- 98.1 3.7E-05 8.1E-10 103.3 15.3 140 474-616 60-240 (986)
137 KOG0951 RNA helicase BRR2, DEA 98.0 0.0002 4.2E-09 95.6 20.3 72 1035-1109 606-688 (1674)
138 TIGR00596 rad1 DNA repair prot 98.0 0.00086 1.9E-08 90.5 25.2 119 556-711 9-135 (814)
139 PRK12901 secA preprotein trans 97.9 0.0022 4.9E-08 86.3 26.1 129 995-1132 611-747 (1112)
140 COG1199 DinG Rad3-related DNA 97.8 0.0048 1E-07 82.8 29.5 102 1011-1116 478-612 (654)
141 KOG0352 ATP-dependent DNA heli 97.8 0.00073 1.6E-08 82.0 18.6 102 1015-1118 258-359 (641)
142 smart00489 DEXDc3 DEAD-like he 97.7 0.00034 7.4E-09 84.6 14.4 72 455-526 9-84 (289)
143 smart00488 DEXDc2 DEAD-like he 97.7 0.00034 7.4E-09 84.6 14.4 72 455-526 9-84 (289)
144 PF07652 Flavi_DEAD: Flaviviru 97.7 8E-05 1.7E-09 80.3 7.7 128 474-615 5-137 (148)
145 KOG1513 Nuclear helicase MOP-3 97.7 0.0025 5.3E-08 82.0 20.7 252 430-708 245-536 (1300)
146 KOG0353 ATP-dependent DNA heli 97.6 0.0035 7.6E-08 74.8 19.4 160 454-623 94-269 (695)
147 TIGR01967 DEAH_box_HrpA ATP-de 97.6 0.00029 6.3E-09 98.1 12.2 123 997-1126 263-407 (1283)
148 cd00167 SANT 'SWI3, ADA2, N-Co 97.6 7.7E-05 1.7E-09 63.7 4.2 43 1592-1645 1-44 (45)
149 KOG0391 SNF2 family DNA-depend 97.6 9.8E-06 2.1E-10 105.8 -2.0 66 19-84 314-379 (1958)
150 CHL00122 secA preprotein trans 97.6 0.04 8.7E-07 74.2 30.7 84 994-1080 406-490 (870)
151 PF13871 Helicase_C_4: Helicas 97.5 0.00019 4E-09 85.5 8.3 94 1053-1148 52-153 (278)
152 PLN03212 Transcription repress 97.4 0.00019 4.1E-09 82.7 6.5 61 1589-1660 77-137 (249)
153 COG1110 Reverse gyrase [DNA re 97.4 0.00063 1.4E-08 90.2 11.6 128 453-588 81-215 (1187)
154 TIGR01407 dinG_rel DnaQ family 97.4 0.00074 1.6E-08 92.9 13.0 90 999-1093 660-756 (850)
155 KOG0346 RNA helicase [RNA proc 97.4 0.00054 1.2E-08 83.6 10.0 124 996-1123 253-410 (569)
156 PLN03091 hypothetical protein; 97.3 0.00041 8.8E-09 85.3 6.7 56 1590-1656 67-122 (459)
157 COG0610 Type I site-specific r 97.3 0.0014 3.1E-08 90.6 12.7 140 473-619 273-418 (962)
158 KOG0349 Putative DEAD-box RNA 97.2 0.001 2.2E-08 80.6 8.6 94 1012-1107 505-601 (725)
159 TIGR03117 cas_csf4 CRISPR-asso 97.1 0.003 6.4E-08 83.4 12.7 78 459-537 2-85 (636)
160 PF13086 AAA_11: AAA domain; P 97.1 0.0071 1.5E-07 69.3 14.2 153 454-617 1-229 (236)
161 TIGR00604 rad3 DNA repair heli 97.0 0.0026 5.6E-08 86.0 10.9 72 454-525 10-82 (705)
162 COG1198 PriA Primosomal protei 96.9 0.058 1.3E-06 72.2 22.3 153 453-615 197-360 (730)
163 KOG0949 Predicted helicase, DE 96.9 0.31 6.7E-06 65.4 27.4 159 457-627 514-682 (1330)
164 PRK10536 hypothetical protein; 96.8 0.0043 9.2E-08 73.4 9.0 146 453-619 58-217 (262)
165 PF02562 PhoH: PhoH-like prote 96.8 0.003 6.5E-08 72.7 7.5 144 454-620 4-161 (205)
166 COG4581 Superfamily II RNA hel 96.7 0.011 2.3E-07 80.8 12.9 158 452-646 117-282 (1041)
167 KOG0953 Mitochondrial RNA heli 96.7 0.0062 1.3E-07 76.7 9.6 108 1010-1121 356-475 (700)
168 KOG0329 ATP-dependent RNA heli 96.6 0.039 8.4E-07 63.8 14.9 123 456-587 66-196 (387)
169 KOG0337 ATP-dependent RNA heli 96.6 0.0026 5.6E-08 77.7 5.8 123 996-1123 246-368 (529)
170 PRK12902 secA preprotein trans 96.3 0.23 5E-06 67.3 21.4 83 995-1080 422-505 (939)
171 PF07517 SecA_DEAD: SecA DEAD- 96.0 0.039 8.4E-07 66.1 11.3 153 452-623 75-266 (266)
172 COG3587 Restriction endonuclea 96.0 0.028 6E-07 74.2 10.5 136 471-613 72-241 (985)
173 PRK07246 bifunctional ATP-depe 95.8 0.073 1.6E-06 73.2 13.9 89 999-1092 634-724 (820)
174 PRK08074 bifunctional ATP-depe 95.5 0.086 1.9E-06 73.6 13.4 97 998-1096 737-839 (928)
175 PF13401 AAA_22: AAA domain; P 95.3 0.017 3.8E-07 60.7 4.4 115 473-614 4-125 (131)
176 COG0553 HepA Superfamily II DN 95.3 0.012 2.6E-07 81.1 3.9 181 452-636 82-289 (866)
177 KOG1802 RNA helicase nonsense 95.1 0.078 1.7E-06 68.2 9.7 80 453-540 409-489 (935)
178 TIGR00376 DNA helicase, putati 95.0 0.26 5.5E-06 66.3 14.7 77 452-536 155-232 (637)
179 PF13604 AAA_30: AAA domain; P 94.7 0.27 5.9E-06 56.4 12.1 130 454-616 1-132 (196)
180 PRK14873 primosome assembly pr 94.6 0.15 3.2E-06 68.5 11.1 125 482-615 169-304 (665)
181 COG0653 SecA Preprotein transl 94.6 5.9 0.00013 54.1 25.4 129 995-1132 412-551 (822)
182 KOG0051 RNA polymerase I termi 94.5 0.036 7.9E-07 71.5 4.8 72 1589-1689 383-454 (607)
183 KOG0328 Predicted ATP-dependen 94.2 0.098 2.1E-06 61.6 7.0 166 457-634 52-226 (400)
184 KOG0050 mRNA splicing protein 94.1 0.038 8.2E-07 69.0 3.6 50 1589-1649 6-56 (617)
185 cd00009 AAA The AAA+ (ATPases 94.1 0.52 1.1E-05 49.2 11.7 107 473-617 19-132 (151)
186 KOG4329 DNA-binding protein [G 94.0 0.072 1.6E-06 64.2 5.6 57 138-194 19-77 (445)
187 KOG1131 RNA polymerase II tran 94.0 0.45 9.7E-06 60.2 12.3 60 454-513 16-75 (755)
188 TIGR01967 DEAH_box_HrpA ATP-de 93.9 0.2 4.4E-06 70.9 10.3 135 471-615 80-222 (1283)
189 PF09848 DUF2075: Uncharacteri 93.8 0.17 3.8E-06 63.1 8.8 89 477-590 5-97 (352)
190 KOG0337 ATP-dependent RNA heli 93.7 0.16 3.4E-06 62.9 7.8 129 482-614 67-205 (529)
191 TIGR01448 recD_rel helicase, p 93.7 0.67 1.5E-05 63.2 14.7 136 451-617 320-455 (720)
192 COG5147 REB1 Myb superfamily p 93.5 0.078 1.7E-06 68.1 4.9 73 1590-1692 20-93 (512)
193 KOG0336 ATP-dependent RNA heli 93.3 0.38 8.2E-06 59.2 9.9 146 473-621 257-414 (629)
194 PF13307 Helicase_C_2: Helicas 93.2 0.27 5.9E-06 55.0 8.1 102 1009-1116 6-145 (167)
195 PF13837 Myb_DNA-bind_4: Myb/S 93.1 0.07 1.5E-06 53.1 3.1 59 1591-1656 2-74 (90)
196 PRK11747 dinG ATP-dependent DN 93.0 0.38 8.2E-06 65.4 10.5 91 998-1093 520-616 (697)
197 KOG0947 Cytoplasmic exosomal R 92.7 0.27 5.9E-06 65.8 8.2 140 453-613 296-443 (1248)
198 KOG0049 Transcription factor, 92.6 0.13 2.8E-06 65.5 5.0 50 1589-1649 359-409 (939)
199 PRK04296 thymidine kinase; Pro 92.6 0.5 1.1E-05 54.0 9.4 34 476-512 5-38 (190)
200 KOG1803 DNA helicase [Replicat 92.6 0.51 1.1E-05 61.1 10.2 151 453-616 184-393 (649)
201 PRK09112 DNA polymerase III su 92.4 0.5 1.1E-05 59.2 9.7 42 459-500 28-72 (351)
202 TIGR01447 recD exodeoxyribonuc 92.2 0.88 1.9E-05 60.6 12.1 140 457-616 148-297 (586)
203 KOG1805 DNA replication helica 92.1 0.74 1.6E-05 62.3 11.0 148 453-616 668-831 (1100)
204 PHA02533 17 large terminase pr 91.6 0.77 1.7E-05 60.5 10.6 158 453-627 58-223 (534)
205 KOG4150 Predicted ATP-dependen 91.6 0.5 1.1E-05 59.9 8.3 132 994-1129 507-646 (1034)
206 KOG0948 Nuclear exosomal RNA h 91.4 0.64 1.4E-05 61.1 9.1 153 453-646 128-288 (1041)
207 PRK14949 DNA polymerase III su 91.4 0.9 1.9E-05 62.2 10.9 44 459-502 21-67 (944)
208 TIGR01407 dinG_rel DnaQ family 91.0 1.3 2.9E-05 61.7 12.6 85 451-538 242-332 (850)
209 PRK14956 DNA polymerase III su 91.0 1.1 2.4E-05 58.0 10.8 45 458-502 22-69 (484)
210 KOG0699 Serine/threonine prote 90.9 0.51 1.1E-05 57.1 7.1 26 170-195 133-158 (542)
211 PRK07003 DNA polymerase III su 90.2 1.2 2.7E-05 60.0 10.4 45 459-503 21-68 (830)
212 KOG0333 U5 snRNP-like RNA heli 90.1 0.58 1.3E-05 59.5 6.9 126 457-589 270-409 (673)
213 KOG0341 DEAD-box protein abstr 90.0 0.15 3.2E-06 62.1 1.7 131 481-614 215-367 (610)
214 PHA03333 putative ATPase subun 89.8 1.9 4.2E-05 57.4 11.5 149 457-616 172-333 (752)
215 KOG1132 Helicase of the DEAD s 89.6 1.9 4.1E-05 58.2 11.3 90 1012-1102 561-665 (945)
216 PRK10875 recD exonuclease V su 89.5 1.4 3E-05 59.0 10.3 143 455-617 153-304 (615)
217 PRK11747 dinG ATP-dependent DN 89.3 2.5 5.5E-05 57.7 12.7 36 555-590 220-260 (697)
218 PF06862 DUF1253: Protein of u 88.7 6.7 0.00015 50.5 14.9 141 994-1135 279-429 (442)
219 PRK08074 bifunctional ATP-depe 88.6 2.2 4.8E-05 60.0 11.7 84 453-538 256-345 (928)
220 PF13892 DBINO: DNA-binding do 88.5 0.53 1.1E-05 51.0 4.3 70 6-79 53-133 (139)
221 smart00382 AAA ATPases associa 88.3 1.1 2.4E-05 46.1 6.7 46 474-522 3-48 (148)
222 PRK07764 DNA polymerase III su 88.3 1.9 4.1E-05 59.5 10.6 44 459-502 20-66 (824)
223 KOG0049 Transcription factor, 88.0 0.88 1.9E-05 58.5 6.5 50 1590-1649 253-303 (939)
224 COG1875 NYN ribonuclease and A 87.8 1.5 3.3E-05 54.1 8.1 61 454-516 228-288 (436)
225 KOG0346 RNA helicase [RNA proc 87.6 1.5 3.4E-05 54.8 8.0 136 475-613 58-210 (569)
226 PF02399 Herpes_ori_bp: Origin 87.3 3.1 6.7E-05 56.4 11.2 111 998-1118 269-385 (824)
227 PRK12323 DNA polymerase III su 87.3 5.1 0.00011 53.7 13.0 25 476-500 41-65 (700)
228 TIGR00604 rad3 DNA repair heli 87.2 4 8.8E-05 55.9 12.7 96 998-1095 507-618 (705)
229 COG3421 Uncharacterized protei 86.9 0.71 1.5E-05 59.5 4.8 104 481-589 5-125 (812)
230 KOG0344 ATP-dependent RNA heli 86.8 0.48 1E-05 61.1 3.3 129 457-591 161-303 (593)
231 PRK07994 DNA polymerase III su 86.6 4.2 9.2E-05 54.7 12.0 44 459-502 21-67 (647)
232 KOG0050 mRNA splicing protein 86.3 1.5 3.2E-05 55.6 7.0 86 1590-1691 59-159 (617)
233 KOG0926 DEAH-box RNA helicase 86.1 1.6 3.4E-05 58.0 7.3 133 471-616 269-426 (1172)
234 PRK14960 DNA polymerase III su 86.0 3.2 7E-05 55.6 10.3 41 462-502 23-66 (702)
235 PLN03025 replication factor C 85.9 7.6 0.00016 48.0 13.1 41 459-499 18-60 (319)
236 TIGR00631 uvrb excinuclease AB 85.9 2.6 5.6E-05 57.1 9.6 76 454-535 9-86 (655)
237 TIGR02881 spore_V_K stage V sp 85.7 3.7 8.1E-05 49.2 10.0 24 475-498 44-67 (261)
238 PRK07246 bifunctional ATP-depe 85.7 5.2 0.00011 55.6 12.6 81 452-537 243-328 (820)
239 PRK14952 DNA polymerase III su 85.6 4.5 9.7E-05 54.0 11.4 45 458-502 17-64 (584)
240 PF13177 DNA_pol3_delta2: DNA 85.4 11 0.00024 42.1 12.9 45 459-503 2-49 (162)
241 TIGR03420 DnaA_homol_Hda DnaA 84.9 5.9 0.00013 45.9 10.9 45 472-520 37-81 (226)
242 PRK08691 DNA polymerase III su 84.6 6.6 0.00014 53.1 12.2 44 459-502 21-67 (709)
243 PRK08451 DNA polymerase III su 84.6 3.5 7.6E-05 54.4 9.7 44 459-502 19-65 (535)
244 KOG0950 DNA polymerase theta/e 84.4 5.9 0.00013 54.1 11.6 142 472-623 239-396 (1008)
245 KOG0920 ATP-dependent RNA heli 84.3 3.6 7.9E-05 56.7 9.8 112 1013-1126 414-547 (924)
246 TIGR02928 orc1/cdc6 family rep 84.2 8.6 0.00019 48.0 12.7 52 447-500 13-67 (365)
247 PRK05707 DNA polymerase III su 83.7 4.5 9.8E-05 50.4 9.8 48 454-501 3-50 (328)
248 smart00492 HELICc3 helicase su 83.5 5.3 0.00012 43.8 9.1 53 1039-1093 25-79 (141)
249 PF05876 Terminase_GpA: Phage 83.3 2.4 5.3E-05 56.3 7.6 171 446-626 8-191 (557)
250 KOG0326 ATP-dependent RNA heli 83.3 2.2 4.8E-05 51.5 6.4 128 481-613 130-267 (459)
251 PF06733 DEAD_2: DEAD_2; Inte 83.2 0.9 2E-05 51.0 3.1 37 554-590 119-159 (174)
252 PF05621 TniB: Bacterial TniB 83.1 9.1 0.0002 47.0 11.6 135 456-614 39-189 (302)
253 TIGR03015 pepcterm_ATPase puta 82.9 4.6 0.0001 48.1 9.1 43 456-498 25-68 (269)
254 PRK05298 excinuclease ABC subu 82.7 4.2 9.1E-05 55.2 9.6 78 452-535 10-89 (652)
255 PRK06871 DNA polymerase III su 82.2 9 0.00019 47.7 11.4 47 455-501 3-52 (325)
256 PF02399 Herpes_ori_bp: Origin 82.1 4.6 0.0001 54.9 9.3 126 477-614 53-190 (824)
257 PRK12402 replication factor C 82.1 3.5 7.6E-05 50.7 8.0 52 460-513 21-74 (337)
258 PRK14958 DNA polymerase III su 81.8 9.5 0.00021 50.3 12.1 44 459-502 21-67 (509)
259 KOG0051 RNA polymerase I termi 81.8 1.6 3.4E-05 57.1 4.9 53 1589-1652 435-513 (607)
260 PRK12723 flagellar biosynthesi 81.5 22 0.00047 45.5 14.6 130 475-630 176-313 (388)
261 PRK07940 DNA polymerase III su 81.1 8.2 0.00018 49.3 10.8 26 476-501 39-64 (394)
262 COG1484 DnaC DNA replication p 80.5 14 0.00031 44.3 12.1 66 455-523 87-152 (254)
263 PRK14951 DNA polymerase III su 80.3 7.2 0.00016 52.4 10.3 43 459-501 21-66 (618)
264 PRK14961 DNA polymerase III su 80.1 12 0.00025 47.4 11.6 44 458-501 20-66 (363)
265 PRK07471 DNA polymerase III su 79.6 5.6 0.00012 50.3 8.6 73 459-533 24-106 (365)
266 COG1643 HrpA HrpA-like helicas 79.5 5 0.00011 55.4 8.6 132 466-613 58-204 (845)
267 PRK14957 DNA polymerase III su 79.2 8.1 0.00018 51.3 10.1 44 459-502 21-67 (546)
268 smart00491 HELICc2 helicase su 79.0 7.1 0.00015 42.9 8.1 53 1040-1093 23-80 (142)
269 PRK14962 DNA polymerase III su 79.0 7.2 0.00016 51.0 9.5 26 476-501 39-64 (472)
270 PRK07993 DNA polymerase III su 78.3 9.6 0.00021 47.7 10.0 49 454-502 2-53 (334)
271 PRK08058 DNA polymerase III su 78.0 13 0.00029 46.2 11.1 130 456-613 8-148 (329)
272 PRK14950 DNA polymerase III su 77.5 14 0.0003 49.7 11.7 44 458-501 20-66 (585)
273 KOG1279 Chromatin remodeling f 77.4 2.1 4.5E-05 55.6 3.9 46 1589-1645 252-297 (506)
274 KOG0922 DEAH-box RNA helicase 77.3 11 0.00023 50.1 10.1 132 466-613 59-204 (674)
275 PRK08769 DNA polymerase III su 77.3 14 0.0003 46.0 10.8 49 453-501 3-54 (319)
276 PRK14955 DNA polymerase III su 76.9 18 0.0004 46.2 12.2 43 459-501 21-66 (397)
277 PRK06645 DNA polymerase III su 76.6 10 0.00023 49.9 10.0 44 459-502 26-72 (507)
278 PRK06526 transposase; Provisio 76.4 6.1 0.00013 47.5 7.3 55 460-525 89-143 (254)
279 PRK08181 transposase; Validate 76.3 20 0.00043 43.6 11.5 47 455-502 88-134 (269)
280 PTZ00112 origin recognition co 76.1 20 0.00043 49.6 12.2 51 447-499 753-807 (1164)
281 KOG0327 Translation initiation 75.9 3.6 7.8E-05 51.2 5.1 139 473-614 63-210 (397)
282 PRK14974 cell division protein 75.6 26 0.00057 44.0 12.6 43 476-521 143-189 (336)
283 COG5147 REB1 Myb superfamily p 75.6 1.2 2.6E-05 57.7 1.1 48 1590-1649 291-338 (512)
284 CHL00181 cbbX CbbX; Provisiona 75.0 14 0.0003 45.3 9.9 25 474-498 60-84 (287)
285 KOG0951 RNA helicase BRR2, DEA 74.9 7.9 0.00017 54.2 8.3 111 468-592 1154-1269(1674)
286 PRK14969 DNA polymerase III su 74.5 18 0.00039 48.1 11.5 44 459-502 21-67 (527)
287 PRK14948 DNA polymerase III su 74.5 17 0.00037 49.2 11.4 43 459-501 21-66 (620)
288 PRK14964 DNA polymerase III su 74.3 19 0.00041 47.3 11.4 45 459-503 18-65 (491)
289 PRK08084 DNA replication initi 73.8 17 0.00036 43.2 10.0 25 474-498 46-70 (235)
290 KOG4329 DNA-binding protein [G 73.6 3.7 8E-05 50.3 4.3 47 297-345 31-77 (445)
291 PRK00440 rfc replication facto 73.2 32 0.00069 42.0 12.6 25 475-499 40-64 (319)
292 PRK14963 DNA polymerase III su 73.1 23 0.0005 46.8 11.8 43 459-501 19-64 (504)
293 TIGR02880 cbbX_cfxQ probable R 72.6 11 0.00024 46.0 8.3 25 474-498 59-83 (284)
294 PRK06647 DNA polymerase III su 72.2 14 0.00031 49.4 9.7 27 476-502 41-67 (563)
295 PRK05703 flhF flagellar biosyn 71.4 32 0.0007 44.5 12.4 56 576-631 299-359 (424)
296 PRK14965 DNA polymerase III su 71.1 15 0.00034 49.2 9.8 45 459-503 21-68 (576)
297 PRK06090 DNA polymerase III su 71.1 28 0.00061 43.3 11.4 49 454-502 3-54 (319)
298 PRK00411 cdc6 cell division co 71.1 45 0.00097 42.3 13.6 52 447-500 28-82 (394)
299 PF13245 AAA_19: Part of AAA d 71.1 8.7 0.00019 37.7 5.6 43 476-519 13-57 (76)
300 PRK14959 DNA polymerase III su 70.8 14 0.00031 49.6 9.2 39 463-501 25-66 (624)
301 PF12340 DUF3638: Protein of u 70.8 5.7 0.00012 46.9 5.0 73 452-527 21-93 (229)
302 PRK10917 ATP-dependent DNA hel 70.7 24 0.00051 48.4 11.6 102 986-1088 282-389 (681)
303 PRK09111 DNA polymerase III su 70.0 20 0.00044 48.2 10.5 43 459-501 29-74 (598)
304 KOG0991 Replication factor C, 69.9 4.6 9.9E-05 47.4 3.9 87 474-601 49-135 (333)
305 TIGR03345 VI_ClpV1 type VI sec 69.2 21 0.00045 50.1 10.7 64 463-526 196-271 (852)
306 PHA02544 44 clamp loader, smal 68.9 29 0.00064 42.5 11.0 40 576-615 100-141 (316)
307 PRK08727 hypothetical protein; 68.5 21 0.00046 42.2 9.3 25 476-501 44-68 (233)
308 TIGR01557 myb_SHAQKYF myb-like 68.3 9.9 0.00021 35.5 5.0 47 1590-1645 3-53 (57)
309 KOG0922 DEAH-box RNA helicase 68.2 14 0.0003 49.2 8.0 109 1012-1125 258-392 (674)
310 cd01120 RecA-like_NTPases RecA 68.1 32 0.0007 36.8 9.9 34 477-513 3-36 (165)
311 PRK05563 DNA polymerase III su 68.0 33 0.00072 45.9 11.9 28 476-503 41-68 (559)
312 TIGR02768 TraA_Ti Ti-type conj 67.7 28 0.0006 48.3 11.3 126 452-616 350-478 (744)
313 PRK06964 DNA polymerase III su 67.6 33 0.00072 43.2 11.0 47 455-501 2-49 (342)
314 cd01121 Sms Sms (bacterial rad 67.1 37 0.0008 43.2 11.5 102 461-589 69-171 (372)
315 TIGR02688 conserved hypothetic 67.0 19 0.0004 46.4 8.7 46 457-502 193-238 (449)
316 PHA03368 DNA packaging termina 66.6 21 0.00045 48.1 9.2 118 481-613 262-389 (738)
317 PRK06835 DNA replication prote 66.3 46 0.001 41.7 11.9 46 454-499 160-209 (329)
318 PF01443 Viral_helicase1: Vira 66.2 11 0.00023 43.9 6.2 42 575-619 61-102 (234)
319 PRK06921 hypothetical protein; 66.2 31 0.00068 41.8 10.2 27 473-499 117-143 (266)
320 COG1643 HrpA HrpA-like helicas 65.9 22 0.00049 49.3 9.8 111 1011-1126 258-390 (845)
321 TIGR00365 monothiol glutaredox 65.9 31 0.00068 35.4 8.6 65 1011-1075 10-80 (97)
322 PF03354 Terminase_1: Phage Te 65.2 35 0.00077 44.7 11.2 148 457-615 1-163 (477)
323 PF07529 HSA: HSA; InterPro: 65.2 13 0.00028 35.8 5.5 45 12-57 27-71 (73)
324 KOG0298 DEAD box-containing he 64.8 2.8 6.1E-05 58.4 1.1 141 992-1138 1199-1341(1394)
325 PRK14953 DNA polymerase III su 63.7 38 0.00081 44.7 10.9 43 459-501 21-66 (486)
326 PRK05642 DNA replication initi 63.7 43 0.00094 39.7 10.6 37 577-613 98-138 (234)
327 PRK08116 hypothetical protein; 63.5 34 0.00073 41.6 9.8 27 473-499 114-140 (268)
328 TIGR00643 recG ATP-dependent D 62.8 34 0.00075 46.5 10.7 102 986-1088 256-363 (630)
329 KOG0925 mRNA splicing factor A 62.5 9.4 0.0002 48.7 4.8 149 466-624 55-211 (699)
330 TIGR03117 cas_csf4 CRISPR-asso 62.4 46 0.00099 45.2 11.5 83 1010-1096 469-564 (636)
331 smart00573 HSA domain in helic 62.1 12 0.00026 36.5 4.6 44 13-57 28-71 (73)
332 KOG0950 DNA polymerase theta/e 62.0 19 0.00042 49.5 7.9 75 1039-1116 525-605 (1008)
333 KOG0457 Histone acetyltransfer 61.7 9.2 0.0002 48.3 4.6 46 1590-1646 72-118 (438)
334 PRK08903 DnaA regulatory inact 61.7 73 0.0016 37.2 11.9 25 473-497 42-66 (227)
335 PRK05580 primosome assembly pr 61.6 48 0.001 45.5 11.8 95 993-1090 171-266 (679)
336 PRK00149 dnaA chromosomal repl 61.5 43 0.00094 43.6 10.9 24 476-499 151-174 (450)
337 TIGR02562 cas3_yersinia CRISPR 61.5 57 0.0012 46.2 12.2 48 1063-1113 837-884 (1110)
338 PRK11054 helD DNA helicase IV; 61.4 19 0.00041 49.3 7.8 69 453-527 195-265 (684)
339 KOG0924 mRNA splicing factor A 61.0 12 0.00026 49.5 5.5 106 1036-1144 597-721 (1042)
340 PF00448 SRP54: SRP54-type pro 60.8 46 0.00099 38.6 9.8 132 477-631 5-142 (196)
341 PRK05896 DNA polymerase III su 60.8 58 0.0013 43.9 11.9 43 459-501 21-66 (605)
342 PRK04195 replication factor C 60.4 44 0.00095 44.0 10.8 25 473-497 39-63 (482)
343 TIGR00595 priA primosomal prot 60.3 52 0.0011 43.6 11.4 95 993-1090 6-101 (505)
344 PRK11823 DNA repair protein Ra 59.8 69 0.0015 41.8 12.2 103 461-590 67-170 (446)
345 PRK14087 dnaA chromosomal repl 59.7 40 0.00087 44.0 10.1 23 476-498 144-166 (450)
346 COG0552 FtsY Signal recognitio 59.5 32 0.00068 42.9 8.5 126 474-621 139-276 (340)
347 PRK06893 DNA replication initi 59.2 64 0.0014 38.1 10.9 22 477-498 43-64 (229)
348 KOG0989 Replication factor C, 58.9 15 0.00033 45.0 5.6 43 457-499 39-83 (346)
349 COG5259 RSC8 RSC chromatin rem 58.9 7.7 0.00017 49.1 3.3 44 1591-1645 280-323 (531)
350 PF13873 Myb_DNA-bind_5: Myb/S 58.3 19 0.0004 35.2 5.3 53 1591-1649 3-72 (78)
351 PRK13889 conjugal transfer rel 58.3 45 0.00098 47.4 10.8 128 453-618 345-474 (988)
352 PRK12422 chromosomal replicati 58.1 38 0.00082 44.2 9.5 24 476-499 144-167 (445)
353 cd01124 KaiC KaiC is a circadi 57.8 35 0.00075 38.2 8.1 47 477-526 3-49 (187)
354 PRK07133 DNA polymerase III su 57.8 47 0.001 45.6 10.5 26 476-501 43-68 (725)
355 TIGR00362 DnaA chromosomal rep 57.8 51 0.0011 42.2 10.5 24 476-499 139-162 (405)
356 KOG0332 ATP-dependent RNA heli 57.8 17 0.00037 45.3 5.8 130 473-613 129-273 (477)
357 KOG1133 Helicase of the DEAD s 57.7 4.8 0.0001 53.2 1.3 73 520-602 299-374 (821)
358 PRK13342 recombination factor 57.1 48 0.001 42.7 10.2 21 475-495 38-58 (413)
359 COG0470 HolB ATPase involved i 56.8 45 0.00098 40.7 9.5 28 476-503 27-54 (325)
360 PRK14954 DNA polymerase III su 56.6 66 0.0014 43.7 11.5 44 458-501 20-66 (620)
361 COG0464 SpoVK ATPases of the A 55.6 44 0.00095 44.0 9.6 66 455-526 250-323 (494)
362 TIGR02397 dnaX_nterm DNA polym 55.5 55 0.0012 40.7 10.1 26 476-501 39-64 (355)
363 cd02037 MRP-like MRP (Multiple 55.3 83 0.0018 35.0 10.5 52 575-630 66-117 (169)
364 COG2812 DnaX DNA polymerase II 55.2 22 0.00047 46.9 6.5 125 459-613 21-156 (515)
365 PRK11889 flhF flagellar biosyn 55.2 1.2E+02 0.0027 39.1 12.8 125 477-631 245-379 (436)
366 TIGR02639 ClpA ATP-dependent C 55.1 55 0.0012 45.4 10.8 27 472-498 202-228 (731)
367 PHA03372 DNA packaging termina 54.3 36 0.00078 45.4 8.2 128 468-613 198-336 (668)
368 PRK09183 transposase/IS protei 53.8 48 0.001 40.0 8.8 30 472-502 101-130 (259)
369 cd03028 GRX_PICOT_like Glutare 53.6 48 0.001 33.4 7.4 59 1011-1069 6-70 (90)
370 PTZ00293 thymidine kinase; Pro 53.6 30 0.00064 40.7 6.7 35 477-514 8-42 (211)
371 TIGR00708 cobA cob(I)alamin ad 53.3 18 0.00039 41.2 4.7 54 570-623 91-148 (173)
372 cd01122 GP4d_helicase GP4d_hel 52.3 39 0.00085 40.5 7.8 41 471-513 28-68 (271)
373 PF00580 UvrD-helicase: UvrD/R 52.1 26 0.00056 42.3 6.3 56 455-516 1-57 (315)
374 COG3267 ExeA Type II secretory 52.0 64 0.0014 39.0 9.1 114 475-618 53-177 (269)
375 TIGR00678 holB DNA polymerase 52.0 34 0.00073 38.8 6.8 25 476-500 17-41 (188)
376 COG1110 Reverse gyrase [DNA re 51.1 53 0.0011 46.0 9.2 87 997-1092 323-416 (1187)
377 PF00004 AAA: ATPase family as 50.6 11 0.00025 39.2 2.6 34 477-516 2-35 (132)
378 PRK07399 DNA polymerase III su 50.1 1.4E+02 0.003 37.3 12.1 43 459-501 9-54 (314)
379 PRK06305 DNA polymerase III su 49.8 82 0.0018 41.2 10.6 42 459-500 22-66 (451)
380 KOG0926 DEAH-box RNA helicase 49.8 11 0.00024 50.6 2.8 66 1055-1123 620-704 (1172)
381 PRK00771 signal recognition pa 49.6 76 0.0017 41.4 10.1 25 475-499 97-121 (437)
382 KOG0048 Transcription factor, 48.7 25 0.00054 41.9 5.3 55 1589-1654 61-115 (238)
383 PRK05986 cob(I)alamin adenolsy 48.2 51 0.0011 38.2 7.4 141 473-625 22-168 (191)
384 PRK06646 DNA polymerase III su 47.6 57 0.0012 36.6 7.5 81 994-1093 11-95 (154)
385 TIGR01547 phage_term_2 phage t 47.5 57 0.0012 41.6 8.6 131 477-616 5-142 (396)
386 KOG4282 Transcription factor G 47.4 27 0.00058 43.9 5.5 62 1591-1659 55-126 (345)
387 PF13173 AAA_14: AAA domain 46.9 19 0.00041 38.3 3.6 34 579-613 64-97 (128)
388 COG0593 DnaA ATPase involved i 46.7 58 0.0013 41.9 8.3 52 576-627 175-234 (408)
389 COG5271 MDN1 AAA ATPase contai 46.6 1.5E+02 0.0034 43.9 12.2 343 74-461 3791-4182(4600)
390 cd00561 CobA_CobO_BtuR ATP:cor 45.8 1.2E+02 0.0026 34.2 9.7 126 478-623 7-146 (159)
391 PRK07276 DNA polymerase III su 45.5 1.3E+02 0.0028 37.2 10.7 47 454-501 2-50 (290)
392 KOG2543 Origin recognition com 45.5 1.7E+02 0.0037 37.4 11.5 225 453-707 8-253 (438)
393 PRK04132 replication factor C 45.5 82 0.0018 44.2 10.0 46 576-624 630-679 (846)
394 PRK10824 glutaredoxin-4; Provi 45.5 79 0.0017 33.8 7.8 64 1012-1076 14-84 (115)
395 PRK13341 recombination factor 45.1 78 0.0017 43.8 9.7 20 475-494 54-73 (725)
396 PF06564 YhjQ: YhjQ protein; 44.9 30 0.00066 41.5 5.1 32 482-516 11-44 (243)
397 TIGR01242 26Sp45 26S proteasom 44.5 93 0.002 39.3 9.7 25 473-497 156-180 (364)
398 PRK14873 primosome assembly pr 44.4 97 0.0021 42.5 10.3 79 994-1074 170-250 (665)
399 cd03115 SRP The signal recogni 44.3 3.7E+02 0.008 29.9 13.5 23 477-499 4-26 (173)
400 cd01125 repA Hexameric Replica 44.1 70 0.0015 37.8 8.1 51 476-526 4-66 (239)
401 PF03237 Terminase_6: Terminas 44.1 91 0.002 38.3 9.4 129 481-618 5-141 (384)
402 PRK13849 putative crown gall t 44.0 1E+02 0.0022 36.6 9.4 114 482-629 11-127 (231)
403 COG3972 Superfamily I DNA and 43.9 82 0.0018 41.1 8.7 138 482-632 185-342 (660)
404 KOG0924 mRNA splicing factor A 43.5 92 0.002 41.9 9.2 31 465-495 363-393 (1042)
405 TIGR00580 mfd transcription-re 43.4 1.3E+02 0.0029 42.8 11.7 101 987-1088 473-579 (926)
406 PRK05564 DNA polymerase III su 43.3 1.1E+02 0.0025 37.7 10.0 42 460-501 10-54 (313)
407 cd01128 rho_factor Transcripti 42.8 34 0.00073 41.2 5.1 28 462-490 6-33 (249)
408 CHL00095 clpC Clp protease ATP 42.4 86 0.0019 44.1 9.7 41 456-498 184-225 (821)
409 COG1200 RecG RecG-like helicas 42.4 1.1E+02 0.0025 41.4 10.1 105 981-1087 278-389 (677)
410 PRK00080 ruvB Holliday junctio 42.2 2.1E+02 0.0046 35.6 12.2 43 455-497 29-75 (328)
411 PRK13826 Dtr system oriT relax 41.8 1.3E+02 0.0028 43.4 11.2 129 453-618 380-509 (1102)
412 COG0630 VirB11 Type IV secreto 41.6 1.4E+02 0.003 37.3 10.3 132 453-627 126-261 (312)
413 PRK10865 protein disaggregatio 41.6 83 0.0018 44.4 9.4 35 463-497 187-223 (857)
414 PF10440 WIYLD: Ubiquitin-bind 41.5 18 0.00038 34.8 2.0 19 1599-1617 30-48 (65)
415 TIGR00416 sms DNA repair prote 41.3 1.4E+02 0.0031 39.0 10.9 47 476-525 97-143 (454)
416 TIGR03346 chaperone_ClpB ATP-d 41.2 79 0.0017 44.7 9.1 35 463-497 182-218 (852)
417 PRK12727 flagellar biosynthesi 41.1 7.7E+02 0.017 33.3 17.1 23 477-499 354-376 (559)
418 PRK08699 DNA polymerase III su 40.9 1.4E+02 0.0031 37.4 10.3 48 455-502 2-50 (325)
419 PF12776 Myb_DNA-bind_3: Myb/S 40.8 52 0.0011 33.1 5.5 54 1592-1651 1-67 (96)
420 PRK14722 flhF flagellar biosyn 40.1 1.7E+02 0.0036 37.5 10.8 39 473-512 137-175 (374)
421 cd00984 DnaB_C DnaB helicase C 39.9 70 0.0015 37.6 7.2 49 471-521 11-63 (242)
422 PF09111 SLIDE: SLIDE; InterP 39.7 37 0.0008 36.4 4.3 57 1590-1649 49-113 (118)
423 PHA00350 putative assembly pro 39.7 55 0.0012 42.0 6.6 23 480-502 8-30 (399)
424 PF00265 TK: Thymidine kinase; 38.5 36 0.00077 38.9 4.3 33 478-513 6-38 (176)
425 PHA02244 ATPase-like protein 38.5 1.9E+02 0.0041 37.1 10.7 26 471-496 117-142 (383)
426 COG4098 comFA Superfamily II D 38.2 71 0.0015 39.9 6.7 95 490-589 291-386 (441)
427 PRK12724 flagellar biosynthesi 37.9 3.5E+02 0.0076 35.4 13.1 126 477-632 227-362 (432)
428 COG0626 MetC Cystathionine bet 37.6 74 0.0016 40.9 7.2 110 995-1132 85-195 (396)
429 PRK14712 conjugal transfer nic 37.4 87 0.0019 46.7 8.6 141 448-618 829-971 (1623)
430 PHA02518 ParA-like protein; Pr 36.7 1.5E+02 0.0033 33.7 9.2 39 480-521 8-48 (211)
431 PRK05728 DNA polymerase III su 36.6 1.4E+02 0.0031 32.9 8.4 82 994-1093 11-96 (142)
432 PF07015 VirC1: VirC1 protein; 36.3 3E+02 0.0066 33.0 11.4 38 483-523 12-51 (231)
433 TIGR01074 rep ATP-dependent DN 36.3 57 0.0012 44.5 6.5 67 455-527 2-70 (664)
434 PRK14086 dnaA chromosomal repl 36.1 2.6E+02 0.0055 38.2 12.0 23 476-498 317-339 (617)
435 PRK10689 transcription-repair 35.9 2E+02 0.0043 42.2 11.7 103 985-1088 620-728 (1147)
436 cd03418 GRX_GRXb_1_3_like Glut 35.7 1.4E+02 0.0031 28.2 7.3 57 1014-1070 1-58 (75)
437 PRK14971 DNA polymerase III su 35.4 2E+02 0.0044 39.2 11.2 43 459-501 22-67 (614)
438 TIGR01243 CDC48 AAA family ATP 34.2 95 0.0021 43.1 8.1 22 473-494 212-233 (733)
439 PF01695 IstB_IS21: IstB-like 34.1 68 0.0015 36.6 5.6 48 471-525 45-92 (178)
440 KOG0442 Structure-specific end 34.0 7.4E+02 0.016 34.8 15.5 267 453-735 12-310 (892)
441 cd00984 DnaB_C DnaB helicase C 34.0 1.2E+02 0.0025 35.7 7.8 62 1032-1093 119-209 (242)
442 cd00268 DEADc DEAD-box helicas 33.7 5.8E+02 0.013 28.9 13.2 128 993-1129 45-188 (203)
443 PRK07952 DNA replication prote 33.7 1.5E+02 0.0032 35.8 8.6 62 457-525 79-144 (244)
444 COG4646 DNA methylase [Transcr 33.5 25 0.00054 44.8 2.1 43 603-645 472-516 (637)
445 KOG0388 SNF2 family DNA-depend 33.4 43 0.00094 44.7 4.2 53 23-78 405-471 (1185)
446 PF08914 Myb_DNA-bind_2: Rap1 33.0 66 0.0014 31.0 4.4 47 1591-1647 3-58 (65)
447 TIGR02760 TraI_TIGR conjugativ 32.9 2.2E+02 0.0047 44.0 11.8 132 452-616 1017-1151(1960)
448 PRK13709 conjugal transfer nic 32.5 1.8E+02 0.0039 44.2 10.5 140 448-617 961-1102(1747)
449 PTZ00062 glutaredoxin; Provisi 32.0 2.3E+02 0.005 33.3 9.5 75 1000-1075 101-181 (204)
450 PRK03992 proteasome-activating 31.5 58 0.0013 41.7 5.0 40 473-518 165-204 (389)
451 PRK11034 clpA ATP-dependent Cl 31.5 1.4E+02 0.0031 41.6 8.9 26 472-497 206-231 (758)
452 PRK14088 dnaA chromosomal repl 31.2 3.3E+02 0.0072 35.6 11.8 25 475-499 132-156 (440)
453 COG1419 FlhF Flagellar GTP-bin 30.8 8.7E+02 0.019 31.6 14.8 73 558-632 265-341 (407)
454 PRK08760 replicative DNA helic 30.8 2.3E+02 0.0049 37.5 10.3 62 463-526 219-280 (476)
455 KOG1832 HIV-1 Vpr-binding prot 30.3 41 0.00088 45.8 3.3 6 287-292 1467-1472(1516)
456 TIGR02640 gas_vesic_GvpN gas v 29.5 1E+02 0.0022 37.3 6.3 49 457-511 5-53 (262)
457 KOG0920 ATP-dependent RNA heli 29.3 1.4E+02 0.0031 42.0 8.3 144 455-614 174-329 (924)
458 KOG0952 DNA/RNA helicase MER3/ 29.3 46 0.00099 46.6 3.6 114 468-590 938-1060(1230)
459 KOG0780 Signal recognition par 29.2 1.1E+02 0.0023 39.0 6.4 94 477-591 105-198 (483)
460 TIGR02894 DNA_bind_RsfA transc 29.2 57 0.0012 36.7 3.7 52 1590-1653 4-62 (161)
461 TIGR00959 ffh signal recogniti 29.2 2.9E+02 0.0063 36.1 10.6 34 476-511 102-135 (428)
462 PRK10416 signal recognition pa 28.9 4.1E+02 0.0088 33.3 11.5 51 573-623 193-253 (318)
463 PF13607 Succ_CoA_lig: Succiny 28.4 3.2E+02 0.007 30.1 9.3 85 1014-1119 3-89 (138)
464 CHL00176 ftsH cell division pr 28.4 1.7E+02 0.0036 40.2 8.6 23 473-495 216-238 (638)
465 PF04364 DNA_pol3_chi: DNA pol 28.1 1.9E+02 0.0042 31.7 7.6 79 998-1093 15-97 (137)
466 PHA00012 I assembly protein 28.0 1.7E+02 0.0036 36.9 7.7 22 478-499 6-27 (361)
467 PRK06620 hypothetical protein; 27.6 1.7E+02 0.0036 34.5 7.5 96 508-615 18-123 (214)
468 COG1198 PriA Primosomal protei 27.3 1.6E+02 0.0035 40.7 8.2 80 993-1074 226-306 (730)
469 smart00005 DEATH DEATH domain, 27.3 49 0.0011 32.8 2.6 60 1597-1657 4-64 (88)
470 TIGR01075 uvrD DNA helicase II 27.3 1E+02 0.0022 42.7 6.5 68 454-527 4-73 (715)
471 PRK09376 rho transcription ter 26.8 1.4E+02 0.003 38.5 7.0 36 462-498 159-194 (416)
472 KOG0737 AAA+-type ATPase [Post 26.4 49 0.0011 41.7 2.9 49 471-525 125-173 (386)
473 PTZ00454 26S protease regulato 26.4 85 0.0018 40.4 5.2 41 473-519 179-219 (398)
474 TIGR03689 pup_AAA proteasome A 26.4 1E+02 0.0022 40.9 6.0 26 473-498 216-241 (512)
475 PRK14970 DNA polymerase III su 26.3 2E+02 0.0043 36.3 8.4 41 459-499 22-65 (367)
476 COG1474 CDC6 Cdc6-related prot 26.3 1.6E+02 0.0034 37.6 7.5 49 453-501 19-70 (366)
477 PRK04328 hypothetical protein; 26.1 2.6E+02 0.0057 33.5 9.0 47 462-511 11-58 (249)
478 cd03031 GRX_GRX_like Glutaredo 25.6 2.1E+02 0.0045 32.0 7.3 47 1014-1060 1-54 (147)
479 COG1066 Sms Predicted ATP-depe 25.2 2.8E+02 0.006 36.0 9.0 86 477-590 97-182 (456)
480 TIGR00665 DnaB replicative DNA 25.2 4.1E+02 0.0088 34.5 11.1 44 473-518 195-238 (434)
481 TIGR02562 cas3_yersinia CRISPR 25.1 2.9E+02 0.0063 39.7 10.0 46 454-499 408-457 (1110)
482 TIGR01243 CDC48 AAA family ATP 24.9 1E+02 0.0022 42.8 5.9 41 473-519 487-527 (733)
483 PRK10919 ATP-dependent DNA hel 24.6 1E+02 0.0022 42.5 5.7 58 454-517 2-60 (672)
484 PRK10867 signal recognition pa 24.3 2E+02 0.0043 37.6 7.9 82 477-560 104-189 (433)
485 PRK05973 replicative DNA helic 24.2 1E+02 0.0022 36.9 5.0 38 471-511 62-99 (237)
486 PF13481 AAA_25: AAA domain; P 24.2 1.9E+02 0.0041 32.6 7.0 53 475-527 34-93 (193)
487 TIGR00150 HI0065_YjeE ATPase, 24.1 1.1E+02 0.0024 33.5 4.8 32 466-497 15-46 (133)
488 cd04179 DPM_DPG-synthase_like 24.0 5E+02 0.011 28.4 10.2 103 1026-1130 14-128 (185)
489 PF12622 NpwBP: mRNA biogenesi 23.8 35 0.00076 31.0 0.8 11 1086-1096 4-14 (48)
490 COG3598 RepA RecA-family ATPas 23.7 2.2E+02 0.0048 35.7 7.6 51 471-521 87-148 (402)
491 TIGR03600 phage_DnaB phage rep 23.7 2.6E+02 0.0056 36.2 8.9 55 463-519 184-238 (421)
492 COG1702 PhoH Phosphate starvat 23.5 43 0.00094 41.8 1.7 43 576-620 243-285 (348)
493 KOG0699 Serine/threonine prote 23.3 1E+02 0.0022 38.5 4.6 24 322-345 134-157 (542)
494 PF00308 Bac_DnaA: Bacterial d 23.2 5.6E+02 0.012 30.2 10.8 37 576-612 97-137 (219)
495 TIGR00614 recQ_fam ATP-depende 22.8 4.1E+02 0.0089 34.9 10.6 78 992-1073 34-111 (470)
496 PF04007 DUF354: Protein of un 22.6 2.2E+02 0.0049 35.9 7.7 93 997-1093 12-114 (335)
497 PRK13923 putative spore coat p 22.4 85 0.0019 35.7 3.6 45 1590-1646 5-56 (170)
498 PRK06731 flhF flagellar biosyn 22.2 7.1E+02 0.015 30.6 11.6 125 475-629 77-211 (270)
499 PF05970 PIF1: PIF1-like helic 21.8 1.6E+02 0.0036 37.3 6.4 61 454-517 1-63 (364)
500 PRK13833 conjugal transfer pro 21.7 2E+02 0.0042 36.2 6.9 55 452-509 126-180 (323)
No 1
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=4.8e-211 Score=1920.93 Aligned_cols=1201 Identities=42% Similarity=0.631 Sum_probs=887.4
Q ss_pred HHHHHHHHHHhhhhheeeehhhhhHHHHHHHHHhhhhhhhhchhhhhhHHHHHhhccCCCCCCCCCCCCCCCcccccccc
Q 000160 25 NISKDVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQLEFLLGQTERYSSMLAENLVDSHKPVQQSPMREQPGIQYKEADE 104 (1992)
Q Consensus 25 ~iAkeV~~fw~~ieKvV~~K~Q~~leekrKKALd~qL~fivgqTEkYS~~Lae~l~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1992)
-.|+++.+||++.|+++.||+|-+..+||+++|++|+.|+++++.+|+.|+.+.|..+..|...-........++.
T Consensus 193 ~~a~d~~~f~ts~eevd~fk~qgr~~~kr~akl~~h~l~~~a~~~k~qr~s~qrl~k~~ep~~~k~~~~~~ll~~~---- 268 (1958)
T KOG0391|consen 193 ALAGDLVAFATSTEEVDLFKRQGRMPSKRMAKLSKHPLTPQAAQLKGQRQSQQRLDKSTEPPVQKAASLHTLLPQL---- 268 (1958)
T ss_pred HHhhhhhccccCcchhhhhhhccccccchhhhhhcCcchHHHHHHhhhHHHHhhcCCCCCchhccccccccccccc----
Confidence 3689999999999999999999999999999999999999999999999999999887665443222211111111
Q ss_pred CCCCCCCCCCcccccchhhccCCCCCCCCccCCCcccCCCCCCCCccchhhhHHHHhhcc--hHHHHHHHHHhhcCCCCC
Q 000160 105 NGAEEPGVQSKEADEDDAEQHSGFEPQLDAADIDEEYDVHSEDESEDDEHTIEEDEALIT--EEERKEELEALHNETDIP 182 (1992)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ef~~~~~ee~eDDE~TIeeeE~~~~--~~~~~~El~~L~~E~elp 182 (1992)
..+ ......+-.++++.+|-++.+.. .+++++|+.+.+.++ .+-.+.++..|+...++|
T Consensus 269 -----------~~~-------~pp~~~t~~~d~ia~f~aqqd~~-~h~d~qIeie~~~e~~~~e~~k~~i~~lk~v~~~p 329 (1958)
T KOG0391|consen 269 -----------PGR-------LPPAGVTTAADSIALFFAQQDQV-VHADTQIEIEVKTEQPNVEIPKPPISQLKIVPSQP 329 (1958)
T ss_pred -----------ccc-------CCCCCCCccccchhhhhhcchhh-hhhhhhhhhhhhhccccccccccchhhccccccch
Confidence 000 11222334566788888887655 788999999988874 367899999999999999
Q ss_pred hHHHHhhhcccccCcCCcccCCCCCCCCcccccccccCCCCccccCCccCCCCcccccccccCCCCcccccccccccccc
Q 000160 183 LQELLKRYAVDKVGRESSAEMGEDEAEPTVVEEGHVQGNGNDLLAGSKLDTSGSLVRRCDEINGGLSISENHLLDIETSQ 262 (1992)
Q Consensus 183 leeLl~~y~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~e~~~~~~~~e~~~~~~~~~~ 262 (1992)
...++.-..++....++.+. ..++.+...--++..+-.+ ++...
T Consensus 330 ~q~~lhv~~pa~e~gps~~r-------------------------------~~p~sh~sfa~~~v~e~~n-----~~~pg 373 (1958)
T KOG0391|consen 330 AQLALHVPTPASEPGPSPAR-------------------------------SSPVSHPSFATNKVLEPVN-----SRTPG 373 (1958)
T ss_pred HHHhhcCCCccccCCCCchh-------------------------------cCccccchhhhhccccccc-----ccCcc
Confidence 99988654433211111100 0111000000000000000 00001
Q ss_pred cccc-cccCCCccccccccCCCCCccCCcccccCCCCCCCccccHHHHHHhhhcCCCchhHHHhhhcCCCCCHHHHHHhh
Q 000160 263 VRDT-SKKSGASTQKQALYDFSDEQEDGDFVVATGEDKDDETTLSEEEELAKADSNNYIDEIALLQKESEIPVEELLARY 341 (1992)
Q Consensus 263 ~~~~-~~~~~~~~~~~~~~~~~~e~eD~df~~~~~e~~DdE~Ti~EqE~~e~~~~~d~~~El~~L~~e~empleeLla~Y 341 (1992)
.... +.++....+ ..-.+.+...|+++...+++..+.+++++-.|... .++|+..+++++..+.|++...|...|
T Consensus 374 vv~s~p~ps~~~~r--n~~~~h~s~~de~seq~~ee~~~~~~~~~~~e~~~--~evd~l~~lse~drddels~y~le~ey 449 (1958)
T KOG0391|consen 374 VVASAPTPSQSPAR--NATSSHDSSQDELSEQITEENQVHQRIAELREAGL--WEVDRLPKLSEADRDDELSDYLLEEEY 449 (1958)
T ss_pred eeeccCChhhcccc--ccccccccccchhhhhhHHHHHHhHhHHHhhhcch--hhhhhhhhhhccccccchhhhcccHHH
Confidence 1100 111000011 01112333444555444444444444444333333 478999999999999999999999999
Q ss_pred hcccccccCC-----ccc--------------------ccccc--cCC-CCCC-CCCCCCccccccccccCCCCCCCC--
Q 000160 342 RKDMKINKIS-----EDE--------------------SDYAS--ALS-DDLS-DSPAHEDGELKLENDFMDGNVDPG-- 390 (1992)
Q Consensus 342 ~~~~~~~~~~-----~~e--------------------~~~~~--~~s-e~~~-~~~~~ede~~~~d~D~~dEe~ds~-- 390 (1992)
-+++.....+ .++ ++..+ ..+ ++.+ ++++...++++.+..+.|...+.+
T Consensus 450 ~~Ay~~~~as~e~~~~de~~e~kqlkE~~G~~eed~~~se~kss~s~s~ed~s~dsese~seeee~s~ss~d~t~e~~~s 529 (1958)
T KOG0391|consen 450 WMAYDVAAASKEVRTVDEHHEEKQLKEERGKKEEDSGMSERKSSASISLEDDSVDSESETSEEEEASESSVDHTTELSNS 529 (1958)
T ss_pred hhccCccccccccchHHHHHHHHhhhhhcCCcccccCcccccccccceeeeccccccCcchhhhccCccccccchhhccc
Confidence 8875431100 000 00000 000 0100 111100000000011111100000
Q ss_pred ----C------ccccc----CcccccccCCCccc----c----ccchhhhhhHHHHHHHhhcCCCCCCccccccccccCC
Q 000160 391 ----A------SQLVM----LPLTEKQEGGSEKK----S----EEGRESENRIADAAAAARSAQPTGITFSTTQVRTKFP 448 (1992)
Q Consensus 391 ----e------~~~~~----~~~~~~~~~~~~~~----~----~~~~~~~~~i~~~aa~a~s~qP~G~t~~tt~vkt~vP 448 (1992)
+ +.... .......+...+.. + .-+....++|+++++.|+++||+|+++.||.|++++|
T Consensus 530 a~~ae~~~~Dg~~~led~~~~yv~s~sed~dE~~~d~~~~~~g~~~~~~~keiadIaavae~~qpKgytl~tTqVktpvP 609 (1958)
T KOG0391|consen 530 AKEAELPLLDGMKLLEDAFLGYVTSGSEDADECPGDRESAERGNIGKPNAKEIADIAAVAEAIQPKGYTLVTTQVKTPVP 609 (1958)
T ss_pred ccccccccccchhhhcccccceecccccchhhcccccCCcccCCcCCCchhhhhhHHHHHHhhCccceeeeeeeeccCch
Confidence 0 00000 00000000000000 0 0112345689999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCC
Q 000160 449 FLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCP 528 (1992)
Q Consensus 449 ~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P 528 (1992)
++|+|.||+||++||+||++||++++|||||||||||||||||+|||||+|++|+|||||||||+|+|+||+||||||||
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP 689 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEE
Q 000160 529 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI 608 (1992)
Q Consensus 529 ~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRL 608 (1992)
+||||+|||+.++|+.||+||.+++.||||||||+++.+|+..|++++|.|||||||||||||+|++|++|++|++++||
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRL 769 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRL 769 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhhcCCC
Q 000160 609 LLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPM 688 (1992)
Q Consensus 609 LLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVekqLP~ 688 (1992)
|||||||||+|+|||+|||||||++|.+|..|+.||++|++||+++...++...|.|||+|||||+|||+|+||+||||+
T Consensus 770 LLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpk 849 (1958)
T KOG0391|consen 770 LLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPK 849 (1958)
T ss_pred eecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccccc--
Q 000160 689 KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSV-- 766 (1992)
Q Consensus 689 K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~-- 766 (1992)
||||||+|+||++||+||++||++..|+++|++|||++++|||||||||||||+||++|++.++|...++.+..++.+
T Consensus 850 KyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r 929 (1958)
T KOG0391|consen 850 KYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITR 929 (1958)
T ss_pred hhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888776432
Q ss_pred --cccCCCCCC-------------cch--------------hhcccc------------ccccccccccCccchhh----
Q 000160 767 --CSMLSPSPL-------------STA--------------DLKGLG------------LLFTNLDFSMNSWESDE---- 801 (1992)
Q Consensus 767 --~~~l~~~~~-------------~~~--------------dl~~l~------------ll~~~~e~~~~~~~~~e---- 801 (1992)
..++...+. ... .+..+. ..|.......+.+...+
T Consensus 930 ~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~ 1009 (1958)
T KOG0391|consen 930 HLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASAS 1009 (1958)
T ss_pred hhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCcccccccc
Confidence 222222210 000 111111 12222222222222222
Q ss_pred ---------------hhhhcCchhHHHHHhhccccc---------------------------ccCCcc-----------
Q 000160 802 ---------------LNAIATPASLIKERADLNNLE---------------------------EVGPFC----------- 828 (1992)
Q Consensus 802 ---------------~~~l~tp~~li~~~~~l~~~~---------------------------~~~p~~----------- 828 (1992)
+..+..+..++.+......+. ...+..
T Consensus 1010 ~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~ 1089 (1958)
T KOG0391|consen 1010 SVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRP 1089 (1958)
T ss_pred chhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCC
Confidence 111111222222111000000 000000
Q ss_pred -------------ccccccCCchH------HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCc
Q 000160 829 -------------THRKRLNGTSI------FEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHP 889 (1992)
Q Consensus 829 -------------~~~~~~~g~~~------~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p 889 (1992)
.....+.|++. ...+...+.+.|.+...+++..+...+ .|+|+..+.+++.+..+
T Consensus 1090 pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~------APvyg~e~l~~c~lp~e 1163 (1958)
T KOG0391|consen 1090 PVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN------APVYGRELLRICALPSE 1163 (1958)
T ss_pred CCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc------Ccccchhhhhhhccchh
Confidence 00000111111 012334567788888888888777665 89999999888877654
Q ss_pred chhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCcccccc-chhhhhccccC
Q 000160 890 VCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQP-TYKEKCSEVLS 968 (1992)
Q Consensus 890 ~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~-~~~~~~~~~~s 968 (1992)
+..- +.+.........++.+++.+..++++|.|++|.+.++++.++..+++..+.... .+.......+.
T Consensus 1164 ~i~p----------~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~ 1233 (1958)
T KOG0391|consen 1164 GIVP----------WRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELA 1233 (1958)
T ss_pred hhcc----------ccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhc
Confidence 3221 112333445566777888999999999999999999999999888744443322 34445556677
Q ss_pred CCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCH
Q 000160 969 PLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQP 1048 (1992)
Q Consensus 969 ~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~ 1048 (1992)
+.+.+ ......+.++||+.||||||||||+.|+.||++|+.+||||||||||++|||+|+.||++|||.|+||||+|++
T Consensus 1234 p~~~~-~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~v 1312 (1958)
T KOG0391|consen 1234 PYFQQ-RQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSV 1312 (1958)
T ss_pred cccch-hhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccH
Confidence 77777 47888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHH
Q 000160 1049 EERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEEN 1128 (1992)
Q Consensus 1049 eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEEr 1128 (1992)
+|||++|++||.|++|||||||||+||+|||||+||||||||+||||+||+||++|||||||||+|||||||+++|||||
T Consensus 1313 EqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEen 1392 (1958)
T KOG0391|consen 1313 EQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEEN 1392 (1958)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccCcCChhhhhcCCCCCchhhhhHHHhhhCCCCccCChhh-HHHHHHhhhchHHHH
Q 000160 1129 ILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPMKTMQKEKAINNGNEVSLSNAD-VEAALKCVEDEADYM 1207 (1992)
Q Consensus 1129 Ilkra~qKr~L~~~vIq~g~f~~~~fk~~d~~eLF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~al~~aede~d~~ 1207 (1992)
||+++++||+|++++|++|+|+++||++.+++|||++........... ........++.. ++.+|+.||||+|+.
T Consensus 1393 iLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~p~s~~~~~~----~ad~~v~~see~~le~alA~aede~dV~ 1468 (1958)
T KOG0391|consen 1393 ILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYLPESDVGVPA----KADEFVVASEEPSLEVALAPAEDEEDVE 1468 (1958)
T ss_pred HHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCCccccCCCCc----cchhhhhhcCcchHHHHhhhhcchHHHH
Confidence 999999999999999999999999999999999999854322111111 011123334444 899999999999999
Q ss_pred HHHHHhhHHhhhcccccccccCCCCCcccccccccCCCCCCCCCCcccccCCCCcccCCCCCchhhhhhhhcccchhHHH
Q 000160 1208 ALKRAEQEEAVDNQEFTEEAVGRPEDDELVIEDTVRTDEPTDQGGCMTANNDNGMMLTGNDPKEERALTFAAKEDDVDML 1287 (1992)
Q Consensus 1208 a~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 1287 (1992)
|++.|++|++.++++|+|..... .+.+.+++
T Consensus 1469 Aak~a~~e~e~d~~ef~E~~~~p-----------------------------------~s~~~ee~-------------- 1499 (1958)
T KOG0391|consen 1469 AAKSAEAEEEDDQAEFDEGVDSP-----------------------------------NSNCQEEP-------------- 1499 (1958)
T ss_pred HHHHHHHHHHhhhhhhhcccCCC-----------------------------------CCCcccch--------------
Confidence 99999999999999999974110 01112221
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcChhHHHHHHHHhhhccc-cchH-HhhHhhhHhhhhHHHHHHHHhHHHHHhccCCCC
Q 000160 1288 ADVKQMAAAAAAAGEAISSFENQLRPIDRYAIRFLELWDPI-IDKT-AVESEVKFEEREWELDRIEKYKEEMEAEIDDDE 1365 (1992)
Q Consensus 1288 ~~~~~~~~~~~~~~~~~~~~~~ql~pierya~~~le~~~~~-~~~~-~~~~~~~~~~~~we~~~~~~~ke~~~~~~~~~~ 1365 (1992)
.+.+++..||+||||||||||||||+++.. +.++ ..+.+|..++++|+--+|+.++-.. .||++
T Consensus 1500 -----------~a~ee~adl~eqltPIe~YainfLe~~~~~e~Eee~~eeeav~~a~rd~d~~nl~~~rl~~---eeee~ 1565 (1958)
T KOG0391|consen 1500 -----------SADEELADLMEQLTPIERYAINFLELFYTSEFEEERNEEEAVMTAVRDEDFWNLKTLRLRL---EEEED 1565 (1958)
T ss_pred -----------hhHHHHHHHHhccCcHHHHHHHHHHhccchhhhhhhhHHHHHHHHHhHHhhhcchhhccch---hhhcc
Confidence 123445679999999999999999998876 3333 3457799999999999988773221 25566
Q ss_pred Ccceeee
Q 000160 1366 EPLVYER 1372 (1992)
Q Consensus 1366 ~~l~y~~ 1372 (1992)
++|+|+|
T Consensus 1566 ell~~~~ 1572 (1958)
T KOG0391|consen 1566 ELLGYTR 1572 (1958)
T ss_pred cccccCc
Confidence 8899998
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=5.9e-120 Score=1099.96 Aligned_cols=510 Identities=47% Similarity=0.806 Sum_probs=447.7
Q ss_pred CCCCCC-CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000160 447 FPFLLK-FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 525 (1992)
Q Consensus 447 vP~lLk-~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkK 525 (1992)
.|.+++ +.||+||..||+||+++|+++.|||||||||||||+||||||.++...+++.|||||+||.|++.||.+||+|
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 588887 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccc
Q 000160 526 WCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 605 (1992)
Q Consensus 526 w~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~ 605 (1992)
|||++++++|+|.+.+|...+...+.+..|+||||||++++++...|+++.|.||||||||+|||.+|.+++.|..|++.
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~ 318 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTD 318 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHhccc
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhhc
Q 000160 606 RRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQ 685 (1992)
Q Consensus 606 rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVekq 685 (1992)
+|||||||||||||.|||+||+||+|++|.+...|..||.... ...+.+.+.+||.+|+||+|||+|.+|++.
T Consensus 319 nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~-------~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s 391 (971)
T KOG0385|consen 319 NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTN-------CEGDQELVSRLHKVLRPFLLRRIKSDVEKS 391 (971)
T ss_pred ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccc-------cccCHHHHHHHHhhhhHHHHHHHHHhHhhc
Confidence 9999999999999999999999999999999999999997631 223455899999999999999999999999
Q ss_pred CCCceeEEEEecCCHHHHHHHHHHHHhHHH-HHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccc
Q 000160 686 LPMKQEHVIYCRLSKRQRNLYEDFIASSET-QATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSS 764 (1992)
Q Consensus 686 LP~K~E~VV~c~LS~~Qr~LYdd~is~~~t-~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s 764 (1992)
||||.|.+++|.||+.|+.+|..++...-. -.....+....++|++||||||||||+||++..
T Consensus 392 LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~e---------------- 455 (971)
T KOG0385|consen 392 LPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAE---------------- 455 (971)
T ss_pred CCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCC----------------
Confidence 999999999999999999999988764322 112222356889999999999999999997631
Q ss_pred cccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHHH
Q 000160 765 SVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIR 844 (1992)
Q Consensus 765 ~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~ 844 (1992)
++|
T Consensus 456 -------Pg~---------------------------------------------------------------------- 458 (971)
T KOG0385|consen 456 -------PGP---------------------------------------------------------------------- 458 (971)
T ss_pred -------CCC----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhh
Q 000160 845 KALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMI 924 (1992)
Q Consensus 845 ~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~ 924 (1992)
.|..
T Consensus 459 ------------------------------pytt---------------------------------------------- 462 (971)
T KOG0385|consen 459 ------------------------------PYTT---------------------------------------------- 462 (971)
T ss_pred ------------------------------CCCc----------------------------------------------
Confidence 0000
Q ss_pred hhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHH
Q 000160 925 GLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAIL 1004 (1992)
Q Consensus 925 ~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~L 1004 (1992)
+ .-+.+.||||.+|++|
T Consensus 463 --------------------------------------------------------------d-ehLv~nSGKm~vLDkL 479 (971)
T KOG0385|consen 463 --------------------------------------------------------------D-EHLVTNSGKMLVLDKL 479 (971)
T ss_pred --------------------------------------------------------------c-hHHHhcCcceehHHHH
Confidence 0 0012469999999999
Q ss_pred HHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEeccccccccCCccC
Q 000160 1005 LRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILSTRSGGVGINLVGA 1083 (1992)
Q Consensus 1005 L~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D-~~ifVfLLSTrAGG~GLNLT~A 1083 (1992)
|.+|++.||||||||||++|||||++||.++||.||||||+|+.++|...|+.||.. +.+|||||||||||+||||++|
T Consensus 480 L~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aA 559 (971)
T KOG0385|consen 480 LPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAA 559 (971)
T ss_pred HHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999984 4899999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccCcCChhhhh
Q 000160 1084 DTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELF 1163 (1992)
Q Consensus 1084 dtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~~~fk~~d~~eLF 1163 (1992)
|||||||+||||++|.||++|||||||+|+|+|||||+++||||+|++++.+|++|.++|||+|......-+...-.+++
T Consensus 560 DtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l 639 (971)
T KOG0385|consen 560 DTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELL 639 (971)
T ss_pred cEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999994443333333333443
Q ss_pred cCCCCCchhhhhHHHhhhCCCCccCChhhHHHHHHhhhch
Q 000160 1164 SGHRTLPMKTMQKEKAINNGNEVSLSNADVEAALKCVEDE 1203 (1992)
Q Consensus 1164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~aede 1203 (1992)
...+- . ...+..+.+...++ |++..|++.++.
T Consensus 640 ~~~r~------g-~~~~f~~~es~~~d-Did~il~~~e~k 671 (971)
T KOG0385|consen 640 NLLRF------G-ADPVFESKESTISD-DIDRILERGEEK 671 (971)
T ss_pred HHHHc------C-chhhhhhcccccch-hHHHHHHhhhhh
Confidence 32110 0 11111222445555 899999988743
No 3
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=9e-116 Score=1045.24 Aligned_cols=620 Identities=42% Similarity=0.747 Sum_probs=474.3
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHH
Q 000160 441 TQVRTKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 520 (1992)
Q Consensus 441 t~vkt~vP~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe 520 (1992)
+..-.+.|.+|+++|++||+.||+||+++|+++.|||||||||||||+|+|++||||+..+++|||+|||+|+|++.||.
T Consensus 554 ~t~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWa 633 (1185)
T KOG0388|consen 554 TTRTVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWA 633 (1185)
T ss_pred ceeeccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEeCchhHHHHhhhccCC------CCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhH
Q 000160 521 TEFLKWCPAFKILTYFGSAKERKFKRQGWLK------PNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQ 594 (1992)
Q Consensus 521 ~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k------~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq 594 (1992)
.||.+|||.||++.|.|+..+|+..|..|.. ...|||+||||++++.|...|++++|.|+||||||.||...|.
T Consensus 634 qEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~ 713 (1185)
T KOG0388|consen 634 QEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSS 713 (1185)
T ss_pred HHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhh
Confidence 9999999999999999999999999999974 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhh
Q 000160 595 RWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFI 674 (1992)
Q Consensus 595 ~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFm 674 (1992)
+|+.|+.|+|++||||||||+||+..|||.||||+||.+|.+|.+|.+||+.-|....+.....++..+.|||.+|+|||
T Consensus 714 RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFM 793 (1185)
T KOG0388|consen 714 RWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFM 793 (1185)
T ss_pred HHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888899999999999999999
Q ss_pred hhhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccc
Q 000160 675 LRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFD 754 (1992)
Q Consensus 675 LRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~ 754 (1992)
|||.|++|...|..|++..|+|.||.+|+.||..+-.+... +-+.+++||||||||||+||+.....+.+
T Consensus 794 LRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~---------~E~~~~vmQlrKVCNHPdLFer~e~~s~L- 863 (1185)
T KOG0388|consen 794 LRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISS---------MEMENLVMQLRKVCNHPDLFERLEPRSGL- 863 (1185)
T ss_pred HHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHhcCChHHHhhcCCccee-
Confidence 99999999999999999999999999999999988655432 22336899999999999999875433221
Q ss_pred cccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCcccccccc
Q 000160 755 MSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRL 834 (1992)
Q Consensus 755 ~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~ 834 (1992)
...+.+.+..++..+.. -+.+. .|.-+.+... ++
T Consensus 864 ----~~~V~~nl~dv~S~Grn-------------pi~yk-------------iP~L~~~d~l--e~-------------- 897 (1185)
T KOG0388|consen 864 ----SLEVSDNLGDVVSFGRN-------------PIDYK-------------IPSLVAKDAL--EM-------------- 897 (1185)
T ss_pred ----EEEcccCHHHHHhCCCC-------------ceeec-------------chHHHHHHHH--HH--------------
Confidence 11111111111100000 00000 0000000000 00
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhcc
Q 000160 835 NGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVL 914 (1992)
Q Consensus 835 ~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~ 914 (1992)
.--++|+-+.+ +...+.. ..-....+|+.... ....||..... ..+... ++..+. +.+...
T Consensus 898 ~~fniye~i~~-~~g~~~~--v~Geg~~~w~~~l~--~e~k~G~~~~~-------n~e~~~-Kavtr~------ll~p~~ 958 (1185)
T KOG0388|consen 898 FRFNIYEMIER-INGLRRI--VNGEGPNAWYLRLS--LEFKYGGYVFR-------NVEEAG-KAVTRN------LLNPES 958 (1185)
T ss_pred HHHhHHHHHHH-HhhhHhh--hcCCCcchhcccce--eeeccCCcccc-------cHHHHH-HHHHHH------hcCccc
Confidence 00011110000 0000000 00000111111110 00011100000 000000 010000 001111
Q ss_pred ChHHHHHHhh-----hhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCcc
Q 000160 915 SPVERFQRMI-----GLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRR 989 (1992)
Q Consensus 915 s~~erl~~l~-----~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~r 989 (1992)
++.+...+++ .+.....|+.|.+.+|+.........+. .-...++......++.|...
T Consensus 959 ~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~Pe-----------------Id~E~~~~pLn~~i~~Ppm~ 1021 (1185)
T KOG0388|consen 959 SLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPE-----------------IDLENRHIPLNTTIYVPPMN 1021 (1185)
T ss_pred chhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCC-----------------CCccccCcccccceecCcHH
Confidence 1111111111 1112234677887777653311111110 00111333445566678887
Q ss_pred ccccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000160 990 LIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1069 (1992)
Q Consensus 990 Liq~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLL 1069 (1992)
.+..+||||++|+.||.+|+++|||||+|.|||+|+|+|++||.++||+|+||||+.+...|..++..|+. ++||||||
T Consensus 1022 ~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLL 1100 (1185)
T KOG0388|consen 1022 TFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLL 1100 (1185)
T ss_pred hhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEE
Confidence 77889999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred eccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000160 1070 STRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY 1149 (1992)
Q Consensus 1070 STrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f 1149 (1992)
|||+||+|||||+||||||||+||||+.|.||+||+||+||||+|+||||++.+||||+|+.++++|..+.++||.||.|
T Consensus 1101 STRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~ 1180 (1185)
T KOG0388|consen 1101 STRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGNIF 1180 (1185)
T ss_pred ecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Cccc
Q 000160 1150 NTEF 1153 (1992)
Q Consensus 1150 ~~~~ 1153 (1992)
..+.
T Consensus 1181 qg~n 1184 (1185)
T KOG0388|consen 1181 QGEN 1184 (1185)
T ss_pred cCCC
Confidence 6653
No 4
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-105 Score=976.02 Aligned_cols=517 Identities=44% Similarity=0.729 Sum_probs=419.4
Q ss_pred cccCCCCCC--CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000160 444 RTKFPFLLK--FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 521 (1992)
Q Consensus 444 kt~vP~lLk--~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~ 521 (1992)
.+..|.++. .+|.+||++||+||.-||.++++||||||||||||||+|||+++|.. .|+.||||||||+|+|.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHH
Confidence 345677775 68999999999999999999999999999999999999999999976 677999999999999999999
Q ss_pred HHHHHCCCCeEEEEeCchhHHHHhhhccCC-CCCceEEEEeehhhhh---chhhhhccCccEEEEcCccccCChhhHHHH
Q 000160 522 EFLKWCPAFKILTYFGSAKERKFKRQGWLK-PNSFHVCITTYRLIIQ---DSKVFKRKKWKYLILDEAHLIKNWKSQRWQ 597 (1992)
Q Consensus 522 EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k-~~~fdVVITSYe~l~q---D~~~f~r~~W~~LILDEAH~IKN~~Sq~~q 597 (1992)
||.||||.++|..|||++.+|+..|....+ ...|+|++|||.++.. |..+|++.+|.|+|+||||.+||..|.||+
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 999999999999999999999988875433 2489999999999975 577899999999999999999999999999
Q ss_pred HHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCCh-HHHHHHhcCCCC-CcccccccccHHHHHHHHHhhhHhhh
Q 000160 598 TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSH-QEFKDWFCNPIS-GMVEGQEKVNKEVVDRLHNVLRPFIL 675 (1992)
Q Consensus 598 aLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~-~eF~ewFs~Pi~-g~~e~~~~~~~e~v~rLhkvLrpFmL 675 (1992)
.|.++++.+|||||||||||||.||||||.|++|++|.+. .++...|...-+ .....+....++.|.|...++.||+|
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999864 567777754332 11112223445678999999999999
Q ss_pred hhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcc--hhhHHHHHHHHHHhhCCCcccCCCCccccc
Q 000160 676 RRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASAN--FFGMISVIMQLRKVCNHPDLFEGRPIVSSF 753 (1992)
Q Consensus 676 RRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn--~~silniLmqLRKvCNHP~Lfe~r~i~s~f 753 (1992)
||+|.+|.++||||..+|.+|.|+..|+.+|+.++..........+++ ..+ .+++|||||+.|||-||..-
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlmqlRK~AnHPLL~R~~------ 698 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLMQLRKAANHPLLFRSI------ 698 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHHHHHHHhcChhHHHHh------
Confidence 999999999999999999999999999999999988764333333333 222 67999999999999987210
Q ss_pred ccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccc
Q 000160 754 DMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKR 833 (1992)
Q Consensus 754 ~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~ 833 (1992)
++...+..+... .+. ..+.. .
T Consensus 699 ---------------------Y~de~L~~mak~------------------------------il~-------e~ay~-~ 719 (941)
T KOG0389|consen 699 ---------------------YTDEKLRKMAKR------------------------------ILN-------EPAYK-K 719 (941)
T ss_pred ---------------------ccHHHHHHHHHH------------------------------HhC-------chhhh-h
Confidence 000000000000 000 00000 0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhc
Q 000160 834 LNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIV 913 (1992)
Q Consensus 834 ~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v 913 (1992)
.+-..+|+.+.. . ++ +.
T Consensus 720 ~n~qyIfEDm~~-------------------m------------sD-------------fe------------------- 736 (941)
T KOG0389|consen 720 ANEQYIFEDMEV-------------------M------------SD-------------FE------------------- 736 (941)
T ss_pred cCHHHHHHHHHh-------------------h------------hH-------------HH-------------------
Confidence 000011111100 0 00 00
Q ss_pred cChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCcccccc
Q 000160 914 LSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQF 993 (1992)
Q Consensus 914 ~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~ 993 (1992)
+..+...|.+ . ..++.++. .+.
T Consensus 737 ---------lHqLc~~f~~-------------------~----------------------------~~f~L~d~--~~m 758 (941)
T KOG0389|consen 737 ---------LHQLCCQFRH-------------------L----------------------------SKFQLKDD--LWM 758 (941)
T ss_pred ---------HHHHHHhcCC-------------------C----------------------------cccccCCc--hhh
Confidence 0000000000 0 00111111 357
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
+|||+.+|..||.+++..|||||||||||.|||||+.+|+.+||+|+||||+|.+..||.+|+.||.|..||||||||+|
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGG 1148 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~ 1148 (1992)
||.|||||+||+||+||.++||..|.||.|||||+||||+|+|||||+++||||+|++.+++|..|...+.+++.
T Consensus 839 GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 839 GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred CcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876654
No 5
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=4.7e-104 Score=998.67 Aligned_cols=466 Identities=45% Similarity=0.763 Sum_probs=417.4
Q ss_pred CCCC-CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000160 448 PFLL-KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 448 P~lL-k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw 526 (1992)
|..+ ...||+||+.||+||+..|.++.|||||||||||||||+|++|.++.....+.||||||||.|+|.+|+.||..|
T Consensus 363 p~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w 442 (1373)
T KOG0384|consen 363 PEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETW 442 (1373)
T ss_pred ccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHH
Confidence 4444 469999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CCCCeEEEEeCchhHHHHhhh-ccCCCC-----CceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHH
Q 000160 527 CPAFKILTYFGSAKERKFKRQ-GWLKPN-----SFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL 600 (1992)
Q Consensus 527 ~P~lKVL~Y~Gs~keRk~kr~-gw~k~~-----~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl 600 (1992)
. .+++++|+|+...|...++ .|+... .|+++||||.+++.|...|..++|.+|++||||++||..|++|..|.
T Consensus 443 ~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~ 521 (1373)
T KOG0384|consen 443 T-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLN 521 (1373)
T ss_pred h-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHH
Confidence 9 9999999999999988776 344333 69999999999999999999999999999999999999999999999
Q ss_pred hcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhh
Q 000160 601 NFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKR 680 (1992)
Q Consensus 601 ~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~ 680 (1992)
.|...+|||+|||||||++.|||+|+|||||+-|.+..+|..-|. ..+...+..||.+|+||||||+|+
T Consensus 522 ~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~-----------~~~e~~~~~L~~~L~P~~lRr~kk 590 (1373)
T KOG0384|consen 522 QFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFD-----------EETEEQVRKLQQILKPFLLRRLKK 590 (1373)
T ss_pred HhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhc-----------chhHHHHHHHHHHhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999998772 235667899999999999999999
Q ss_pred hhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHH-HhhcchhhHHHHHHHHHHhhCCCcccCCCCccccccccccc
Q 000160 681 DVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQAT-LASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGID 759 (1992)
Q Consensus 681 DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~-L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~ 759 (1992)
||++.||+|.|.++.|.||..|+.+|..++.+.-...+ -..++..++||++|.||||||||+||.+..-
T Consensus 591 dvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee---------- 660 (1373)
T KOG0384|consen 591 DVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEE---------- 660 (1373)
T ss_pred hhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHH----------
Confidence 99999999999999999999999999999876543322 1234458999999999999999999865210
Q ss_pred ccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchH
Q 000160 760 SQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSI 839 (1992)
Q Consensus 760 ~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~ 839 (1992)
.+
T Consensus 661 ------------------------------------------------------------------------------~~ 662 (1373)
T KOG0384|consen 661 ------------------------------------------------------------------------------KI 662 (1373)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHH
Q 000160 840 FEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVER 919 (1992)
Q Consensus 840 ~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~er 919 (1992)
+...+. ++ ....
T Consensus 663 ~~~~~~------------------------------------------~~--------------------------~d~~ 674 (1373)
T KOG0384|consen 663 LGDFRD------------------------------------------KM--------------------------RDEA 674 (1373)
T ss_pred HHhhhh------------------------------------------cc--------------------------hHHH
Confidence 000000 00 0000
Q ss_pred HHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHH
Q 000160 920 FQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQ 999 (1992)
Q Consensus 920 l~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq 999 (1992)
+.. +...||||-
T Consensus 675 ---L~~-----------------------------------------------------------------lI~sSGKlV 686 (1373)
T KOG0384|consen 675 ---LQA-----------------------------------------------------------------LIQSSGKLV 686 (1373)
T ss_pred ---HHH-----------------------------------------------------------------HHHhcCcEE
Confidence 000 112589999
Q ss_pred HHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEecccccccc
Q 000160 1000 ELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGVGI 1078 (1992)
Q Consensus 1000 ~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAGG~GL 1078 (1992)
.|++||.+|+..||||||||||++|||||+.||..+||+|-||||+++.+.||++|++||+ ++.-|||||||||||+||
T Consensus 687 LLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGI 766 (1373)
T KOG0384|consen 687 LLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGI 766 (1373)
T ss_pred eHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999998 788999999999999999
Q ss_pred CCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000160 1079 NLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY 1149 (1992)
Q Consensus 1079 NLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f 1149 (1992)
||+.||||||||+||||+.|.|||.|||||||++.|.|||||+++||||-|+++|..|.-|+.+|||.+..
T Consensus 767 NLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t 837 (1373)
T KOG0384|consen 767 NLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDT 837 (1373)
T ss_pred cccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765
No 6
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.8e-100 Score=929.95 Aligned_cols=488 Identities=39% Similarity=0.669 Sum_probs=429.7
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHH
Q 000160 445 TKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFL 524 (1992)
Q Consensus 445 t~vP~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~Efk 524 (1992)
..+|..+...|++||+.||+||+.+|.++.||||+||||||||||+|+||+.|.......||.|||||+++|.||+.||.
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999887456699999999999999999999
Q ss_pred HHCCCCeEEEEeCchhHHHH----hhhcc------CCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhH
Q 000160 525 KWCPAFKILTYFGSAKERKF----KRQGW------LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQ 594 (1992)
Q Consensus 525 Kw~P~lKVL~Y~Gs~keRk~----kr~gw------~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq 594 (1992)
+|+|.++|.+|||+...... .-.+| ......+|.||||..+......+..+.|+|+||||+|+|||.+|+
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~ 355 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSK 355 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccH
Confidence 99999999999998762110 00011 122345799999999999999999999999999999999999999
Q ss_pred HHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccc-----ccccccHHHHHHHHHh
Q 000160 595 RWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVE-----GQEKVNKEVVDRLHNV 669 (1992)
Q Consensus 595 ~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e-----~~~~~~~e~v~rLhkv 669 (1992)
.+.+|+.+++.+|++|||||+||+|.|||+|+.|+.|+.++++..|.+.|..||.-... -+..........|+.+
T Consensus 356 islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~l 435 (923)
T KOG0387|consen 356 ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDL 435 (923)
T ss_pred HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999952211 1122334455679999
Q ss_pred hhHhhhhhhhhhhhh-cCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCC
Q 000160 670 LRPFILRRLKRDVEK-QLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRP 748 (1992)
Q Consensus 670 LrpFmLRRtK~DVek-qLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~ 748 (1992)
++||+|||+|.||.. .||.|.|+|++|+||+.||.+|..|+........+.... .++.-+.-||++||||+|+.+++
T Consensus 436 I~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~--~~l~Gi~iLrkICnHPdll~~~~ 513 (923)
T KOG0387|consen 436 ISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKR--NCLSGIDILRKICNHPDLLDRRD 513 (923)
T ss_pred hHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCc--cceechHHHHhhcCCcccccCcc
Confidence 999999999999999 999999999999999999999999999888777665543 23445567999999999986541
Q ss_pred cccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCcc
Q 000160 749 IVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFC 828 (1992)
Q Consensus 749 i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~ 828 (1992)
-...
T Consensus 514 ~~~~---------------------------------------------------------------------------- 517 (923)
T KOG0387|consen 514 EDEK---------------------------------------------------------------------------- 517 (923)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchh
Q 000160 829 THRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSK 908 (1992)
Q Consensus 829 ~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~ 908 (1992)
..|.|
T Consensus 518 -------------------------------------------~~~D~-------------------------------- 522 (923)
T KOG0387|consen 518 -------------------------------------------QGPDY-------------------------------- 522 (923)
T ss_pred -------------------------------------------cCCCc--------------------------------
Confidence 00000
Q ss_pred hhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCc
Q 000160 909 LADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDR 988 (1992)
Q Consensus 909 l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~ 988 (1992)
T Consensus 523 -------------------------------------------------------------------------------- 522 (923)
T KOG0387|consen 523 -------------------------------------------------------------------------------- 522 (923)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH-HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEE
Q 000160 989 RLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS-LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLF 1067 (1992)
Q Consensus 989 rLiq~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~-~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVf 1067 (1992)
...+-.|||+.+|..||..++..|+|||+|||...|||||+.||. ..||+|+|+||+|+...|+.+|++||.+..++||
T Consensus 523 ~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VF 602 (923)
T KOG0387|consen 523 EGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVF 602 (923)
T ss_pred CCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEE
Confidence 001225999999999999999999999999999999999999999 7999999999999999999999999999999999
Q ss_pred EEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 000160 1068 ILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSG 1147 (1992)
Q Consensus 1068 LLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g 1147 (1992)
||+|++||+|||||+||+||+|||+|||+.|.||.+|+|||||+|+|.||||++.+||||+||.+|..|..|.+.++.+
T Consensus 603 LLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~- 681 (923)
T KOG0387|consen 603 LLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKN- 681 (923)
T ss_pred EEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCccccCcCChhhhhcCC
Q 000160 1148 GYNTEFFKKLDPMELFSGH 1166 (1992)
Q Consensus 1148 ~f~~~~fk~~d~~eLF~~~ 1166 (1992)
.-...||+..++.+||++.
T Consensus 682 p~q~RfF~~~dl~dLFsl~ 700 (923)
T KOG0387|consen 682 PEQRRFFKGNDLHDLFSLK 700 (923)
T ss_pred HHHhhhcccccHHHHhCCC
Confidence 4567899999999999864
No 7
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.8e-99 Score=942.59 Aligned_cols=517 Identities=43% Similarity=0.745 Sum_probs=446.5
Q ss_pred cccCCCCC-CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH
Q 000160 444 RTKFPFLL-KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE 522 (1992)
Q Consensus 444 kt~vP~lL-k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~E 522 (1992)
.+..|+.+ .|+|++||+.||.||++||.+++|||||||||||||||||+||+||+..++..||+|||||+|++.||..|
T Consensus 383 v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~E 462 (1157)
T KOG0386|consen 383 VAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSE 462 (1157)
T ss_pred cccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhh
Confidence 35678877 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHH-h
Q 000160 523 FLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL-N 601 (1992)
Q Consensus 523 fkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl-~ 601 (1992)
|.+|.|.+..+.|.|+...|+........ +.|+|++|||..+++|...|.+++|.|+||||+|+|||..+++...|. .
T Consensus 463 f~kWaPSv~~i~YkGtp~~R~~l~~qir~-gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 463 FPKWAPSVQKIQYKGTPQQRSGLTKQQRH-GKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTH 541 (1157)
T ss_pred ccccccceeeeeeeCCHHHHhhHHHHHhc-ccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhcc
Confidence 99999999999999999999876554333 899999999999999999999999999999999999999999999998 6
Q ss_pred cccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccc---cccccHHHHHHHHHhhhHhhhhhh
Q 000160 602 FNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEG---QEKVNKEVVDRLHNVLRPFILRRL 678 (1992)
Q Consensus 602 L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~---~~~~~~e~v~rLhkvLrpFmLRRt 678 (1992)
..+++||||||||+||+|.|||+||+||.|+||.+...|..||..|+....+. ...-.--++.|||+|||||+|||+
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRl 621 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRL 621 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhh
Confidence 79999999999999999999999999999999999999999999999654321 122334578999999999999999
Q ss_pred hhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHH--HHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccc
Q 000160 679 KRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSET--QATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMS 756 (1992)
Q Consensus 679 K~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t--~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~ 756 (1992)
|++|+++||.|.+.|++|.||..|+.+|..+.....- ...-..+.+.+++|.+|+|||+||||++|+...-
T Consensus 622 KkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~------- 694 (1157)
T KOG0386|consen 622 KKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN------- 694 (1157)
T ss_pred hHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc-------
Confidence 9999999999999999999999999999976543211 1122445677899999999999999999843100
Q ss_pred cccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCC
Q 000160 757 GIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNG 836 (1992)
Q Consensus 757 ~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g 836 (1992)
..
T Consensus 695 ------------------------------------~~------------------------------------------ 696 (1157)
T KOG0386|consen 695 ------------------------------------SY------------------------------------------ 696 (1157)
T ss_pred ------------------------------------cc------------------------------------------
Confidence 00
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccCh
Q 000160 837 TSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSP 916 (1992)
Q Consensus 837 ~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~ 916 (1992)
.+.|+.
T Consensus 697 ------------------------------------~~~~~~-------------------------------------- 702 (1157)
T KOG0386|consen 697 ------------------------------------TLHYDI-------------------------------------- 702 (1157)
T ss_pred ------------------------------------ccccCh--------------------------------------
Confidence 000000
Q ss_pred HHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccc
Q 000160 917 VERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCG 996 (1992)
Q Consensus 917 ~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSg 996 (1992)
..+.--||
T Consensus 703 ------------------------------------------------------------------------~dL~R~sG 710 (1157)
T KOG0386|consen 703 ------------------------------------------------------------------------KDLVRVSG 710 (1157)
T ss_pred ------------------------------------------------------------------------hHHHHhcc
Confidence 00011389
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGG 1075 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAGG 1075 (1992)
|+..|+++|.+|++.|||||+|+|||++++||+.||.+.+|+|+|+||+|+.++|..+++.||. |..+|+||+|||+||
T Consensus 711 KfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragg 790 (1157)
T KOG0386|consen 711 KFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGG 790 (1157)
T ss_pred HHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 889999999999999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccC
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFK 1155 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~~~fk 1155 (1992)
+|+||+.|||||+||++|||.+|.||++|+|||||+|+|.|+||++.++|||+|+..+..|+.++..||+.|.|....-.
T Consensus 791 lglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~ 870 (1157)
T KOG0386|consen 791 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTA 870 (1157)
T ss_pred cccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988654211
Q ss_pred cCChhhhhcCCCCCchhhhhHHHhhhCCC----CccCChhhHHHHHHhhhchHHH
Q 000160 1156 KLDPMELFSGHRTLPMKTMQKEKAINNGN----EVSLSNADVEAALKCVEDEADY 1206 (1992)
Q Consensus 1156 ~~d~~eLF~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~al~~aede~d~ 1206 (1992)
. -++.| .+.....+. +....++.|...|++.|||.++
T Consensus 871 ~--eR~~~------------Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~ 911 (1157)
T KOG0386|consen 871 E--EREMF------------LEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFEL 911 (1157)
T ss_pred H--HHHHH------------HHHHHhCCCccccccCCcHHHHHHHHhcchHHHHH
Confidence 1 11111 111111110 2344566789999999998766
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.2e-95 Score=956.45 Aligned_cols=512 Identities=43% Similarity=0.759 Sum_probs=446.5
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHH
Q 000160 445 TKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFL 524 (1992)
Q Consensus 445 t~vP~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~Efk 524 (1992)
+..|..++++||+||+.||+||+.+|.++.|||||||||||||+|||++|+++....+..||+|||||.|++.||..||.
T Consensus 160 ~~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~ 239 (1033)
T PLN03142 160 LVQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIR 239 (1033)
T ss_pred ccCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999887889999999999999999999999
Q ss_pred HHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhccc
Q 000160 525 KWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNS 604 (1992)
Q Consensus 525 Kw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a 604 (1992)
+|||.++++.|+|+...|...+..+..++.|+||||||+++.++...|.++.|++|||||||+|||..|++++++..|++
T Consensus 240 kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a 319 (1033)
T PLN03142 240 RFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFST 319 (1033)
T ss_pred HHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhc
Confidence 99999999999999998877766666677899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhh
Q 000160 605 KRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEK 684 (1992)
Q Consensus 605 ~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVek 684 (1992)
.+||||||||+||++.|||+||+||+|++|++...|..||..+. .......+.+||.+|+||+|||+|.+|.+
T Consensus 320 ~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~-------~~~~~e~i~~L~~~L~pf~LRR~KsdV~~ 392 (1033)
T PLN03142 320 NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISG-------ENDQQEVVQQLHKVLRPFLLRRLKSDVEK 392 (1033)
T ss_pred CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccc-------ccchHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 99999999999999999999999999999999999999998632 12345678999999999999999999999
Q ss_pred cCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccc
Q 000160 685 QLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSS 764 (1992)
Q Consensus 685 qLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s 764 (1992)
.||++.+++++|.||+.|+.+|..++...... ....+....+++++|+||++||||+||.+...
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~-l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep--------------- 456 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDV-VNAGGERKRLLNIAMQLRKCCNHPYLFQGAEP--------------- 456 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHhCCHHhhhcccc---------------
Confidence 99999999999999999999999987654321 12234556789999999999999998743100
Q ss_pred cccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHHH
Q 000160 765 SVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIR 844 (1992)
Q Consensus 765 ~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~ 844 (1992)
.+
T Consensus 457 --------~~---------------------------------------------------------------------- 458 (1033)
T PLN03142 457 --------GP---------------------------------------------------------------------- 458 (1033)
T ss_pred --------cC----------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhh
Q 000160 845 KALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMI 924 (1992)
Q Consensus 845 ~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~ 924 (1992)
.|..
T Consensus 459 ------------------------------~~~~---------------------------------------------- 462 (1033)
T PLN03142 459 ------------------------------PYTT---------------------------------------------- 462 (1033)
T ss_pred ------------------------------cccc----------------------------------------------
Confidence 0000
Q ss_pred hhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHH
Q 000160 925 GLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAIL 1004 (1992)
Q Consensus 925 ~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~L 1004 (1992)
. ..+...|||+..|..|
T Consensus 463 --------------------------------------------------------------~-e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 463 --------------------------------------------------------------G-EHLVENSGKMVLLDKL 479 (1033)
T ss_pred --------------------------------------------------------------h-hHHhhhhhHHHHHHHH
Confidence 0 0001247999999999
Q ss_pred HHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEeccccccccCCccC
Q 000160 1005 LRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILSTRSGGVGINLVGA 1083 (1992)
Q Consensus 1005 L~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D-~~ifVfLLSTrAGG~GLNLT~A 1083 (1992)
|.+++..|+||||||||+.||++|+.+|..+|+.|+||||+++..+|+.+|++||.+ +..+||||||++||+|||||.|
T Consensus 480 L~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~A 559 (1033)
T PLN03142 480 LPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATA 559 (1033)
T ss_pred HHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhC
Confidence 999999999999999999999999999999999999999999999999999999974 5678999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccCcCChhhh
Q 000160 1084 DTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTE-FFKKLDPMEL 1162 (1992)
Q Consensus 1084 dtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~~-~fk~~d~~eL 1162 (1992)
|+|||||+||||+.+.||+||||||||+++|+|||||+.+||||+|++++..|..|+..||++|.+... .+...++.+|
T Consensus 560 d~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~l 639 (1033)
T PLN03142 560 DIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQM 639 (1033)
T ss_pred CEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876543 2333344455
Q ss_pred hcCCCCCchhhhhHHHhhhCCCCccCChhhHHHHHHhhhchHHH
Q 000160 1163 FSGHRTLPMKTMQKEKAINNGNEVSLSNADVEAALKCVEDEADY 1206 (1992)
Q Consensus 1163 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~aede~d~ 1206 (1992)
|.-. .+ .+..+....+++.+|+.+|++.|+.+.-
T Consensus 640 l~~g---------a~-~~f~~~~~~~~~~did~il~~~~~~~~~ 673 (1033)
T PLN03142 640 VRYG---------AE-MVFSSKDSTITDEDIDRIIAKGEEATAE 673 (1033)
T ss_pred HHhC---------hH-HhhhccCCCCCHHHHHHHHHhcHHHHHH
Confidence 5311 11 1112224567899999999999876543
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=5.7e-91 Score=873.53 Aligned_cols=495 Identities=37% Similarity=0.648 Sum_probs=423.5
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhc------CCCCcEEEEecCCcHHH
Q 000160 445 TKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK------GIWGPHLIVVPTSVMLN 518 (1992)
Q Consensus 445 t~vP~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ek------g~~GP~LIVVPtSLL~N 518 (1992)
.++|--++..||.||++||+||.-++...++|||||+||||||+|||+++|.-.+.+ -..-|.|||||.++..+
T Consensus 966 y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGH 1045 (1549)
T KOG0392|consen 966 YKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGH 1045 (1549)
T ss_pred cccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhH
Confidence 567777899999999999999999999999999999999999999999999766654 13458999999999999
Q ss_pred HHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHH
Q 000160 519 WETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQT 598 (1992)
Q Consensus 519 We~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qa 598 (1992)
|+.|+++|||-++|+.|.|...+|...|... +..+||||||+.+++|...|..+.|.|+||||+|-|||.+++.|++
T Consensus 1046 W~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~---~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~ka 1122 (1549)
T KOG0392|consen 1046 WKSEVKKFFPFLKVLQYVGPPAERRELRDQY---KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKA 1122 (1549)
T ss_pred HHHHHHHhcchhhhhhhcCChHHHHHHHhhc---cccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHH
Confidence 9999999999999999999999998888643 4568999999999999999999999999999999999999999999
Q ss_pred HHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccc-----ccccccHHHHHHHHHhhhHh
Q 000160 599 LLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVE-----GQEKVNKEVVDRLHNVLRPF 673 (1992)
Q Consensus 599 Ll~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e-----~~~~~~~e~v~rLhkvLrpF 673 (1992)
+..|.+.+|+.|||||+|||+.|||||++||||+.+++.+.|.+.|..||..... ...+.+-..+..||+.+=||
T Consensus 1123 vkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF 1202 (1549)
T KOG0392|consen 1123 VKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPF 1202 (1549)
T ss_pred HHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999954332 22334445678899999999
Q ss_pred hhhhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHH------HHHhh-c-chhhHHHHHHHHHHhhCCCcccC
Q 000160 674 ILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQ------ATLAS-A-NFFGMISVIMQLRKVCNHPDLFE 745 (1992)
Q Consensus 674 mLRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~------~~L~s-g-n~~silniLmqLRKvCNHP~Lfe 745 (1992)
||||+|.||.+.||||...-.||.||+.|+.+|++|..+.... .+..+ + ...+++..|-.|||.||||.|+-
T Consensus 1203 ~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392|consen 1203 LLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceee
Confidence 9999999999999999999999999999999999998772211 11112 2 26678899999999999999853
Q ss_pred CCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccC
Q 000160 746 GRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVG 825 (1992)
Q Consensus 746 ~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~ 825 (1992)
... .|.
T Consensus 1283 t~~----------------------------------------------------------hp~---------------- 1288 (1549)
T KOG0392|consen 1283 TPV----------------------------------------------------------HPD---------------- 1288 (1549)
T ss_pred CCC----------------------------------------------------------cch----------------
Confidence 210 000
Q ss_pred CccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhcc
Q 000160 826 PFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLY 905 (1992)
Q Consensus 826 p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ 905 (1992)
+..+.+.+ ...
T Consensus 1289 --------------la~i~~~l-------------------------------------------------------~~~ 1299 (1549)
T KOG0392|consen 1289 --------------LAAIVSHL-------------------------------------------------------AHF 1299 (1549)
T ss_pred --------------HHHHHHHH-------------------------------------------------------HHh
Confidence 00000000 000
Q ss_pred chhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhccccc
Q 000160 906 SSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYF 985 (1992)
Q Consensus 906 ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~f 985 (1992)
.+.+++ +
T Consensus 1300 ~~~LHd-----------------------------------------------------------------i-------- 1306 (1549)
T KOG0392|consen 1300 NSSLHD-----------------------------------------------------------------I-------- 1306 (1549)
T ss_pred hhhHHH-----------------------------------------------------------------h--------
Confidence 000000 0
Q ss_pred CCccccccccchHHHHHHHHHHHhh--------------CCCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCH
Q 000160 986 PDRRLIQFDCGKLQELAILLRKLKS--------------DGHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQP 1048 (1992)
Q Consensus 986 Pd~rLiq~dSgKLq~L~~LL~kLks--------------~G~KVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsts~ 1048 (1992)
..++|+.+|..||..+-- .+||||||+|+..|||++++-|-. -.++|+||||+.++
T Consensus 1307 -------~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp 1379 (1549)
T KOG0392|consen 1307 -------QHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPP 1379 (1549)
T ss_pred -------hhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCc
Confidence 135677777777766632 479999999999999999999843 36789999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHH
Q 000160 1049 EERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEEN 1128 (1992)
Q Consensus 1049 eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEEr 1128 (1992)
.+|++++.+||+|+.|-|+||+|.+||+|||||||||||||+-||||..|.|||||||||||+|.|.|||||+.||+||+
T Consensus 1380 ~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEK 1459 (1549)
T KOG0392|consen 1380 GDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEK 1459 (1549)
T ss_pred HHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccCcCChhhhhcC
Q 000160 1129 ILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSG 1165 (1992)
Q Consensus 1129 Ilkra~qKr~L~~~vIq~g~f~~~~fk~~d~~eLF~~ 1165 (1992)
|+..|.-|..+++.||...+-....+..-.+.+||+.
T Consensus 1460 VMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1460 VMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFTV 1496 (1549)
T ss_pred HhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhcc
Confidence 9999999999999999988877777777778899983
No 10
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2e-78 Score=706.16 Aligned_cols=556 Identities=30% Similarity=0.481 Sum_probs=404.0
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHc-cCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000160 445 TKFPFLLKFPLREYQHIGLDWLVTMYE-KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 523 (1992)
Q Consensus 445 t~vP~lLk~~LRpYQ~~GL~WLvslye-~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~Ef 523 (1992)
...|..|-.+|.|||++||.|+..... ...|||||||||+|||||||||++. .....|+|||||+-.+.||..||
T Consensus 175 aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~nEI 250 (791)
T KOG1002|consen 175 AEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKNEI 250 (791)
T ss_pred ccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHHHH
Confidence 467888889999999999999998776 5679999999999999999999876 23346899999999999999999
Q ss_pred HHHCCC-CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc-----------------hhhhhccCccEEEEcCc
Q 000160 524 LKWCPA-FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD-----------------SKVFKRKKWKYLILDEA 585 (1992)
Q Consensus 524 kKw~P~-lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD-----------------~~~f~r~~W~~LILDEA 585 (1992)
.++..+ ++|++|||..+....+. ..+|+||+|||..+... ...+..++|.+||||||
T Consensus 251 ~~~T~gslkv~~YhG~~R~~nike-----l~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEA 325 (791)
T KOG1002|consen 251 ERHTSGSLKVYIYHGAKRDKNIKE-----LMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEA 325 (791)
T ss_pred HHhccCceEEEEEecccccCCHHH-----hhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhh
Confidence 999864 99999999887654432 25899999999887543 22366778999999999
Q ss_pred cccCChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChH---------------------------
Q 000160 586 HLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQ--------------------------- 638 (1992)
Q Consensus 586 H~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~--------------------------- 638 (1992)
|+||+..|...++++.|.+.+||+||||||||.+.|||||++||..++|..+-
T Consensus 326 H~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m 405 (791)
T KOG1002|consen 326 HNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIM 405 (791)
T ss_pred cccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhh
Confidence 99999999999999999999999999999999999999999999887763210
Q ss_pred ----HHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhh--cCCCceeEEEEecCCHHHHHHHHHHHHh
Q 000160 639 ----EFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEK--QLPMKQEHVIYCRLSKRQRNLYEDFIAS 712 (1992)
Q Consensus 639 ----eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVek--qLP~K~E~VV~c~LS~~Qr~LYdd~is~ 712 (1992)
.|......||.. .|....+.......|.+|..+||||+|-.-.. .|||+...+..--|+..+..+|+.+...
T Consensus 406 ~h~~~~n~~mlk~Iqk--fG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~d 483 (791)
T KOG1002|consen 406 QHTCFFNHFMLKPIQK--FGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKD 483 (791)
T ss_pred hhhhhhcccccccchh--hcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHh
Confidence 111111233321 12233455666788999999999999966433 6999988888888999999999988665
Q ss_pred HHH------HHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhhcccccc
Q 000160 713 SET------QATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLL 786 (1992)
Q Consensus 713 ~~t------~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll 786 (1992)
+.. .++..-.||.+++.++.+|||+..||+|+-.. ..... +. .+. +
T Consensus 484 SkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S-----------------~~~n~----~~--enk---~-- 535 (791)
T KOG1002|consen 484 SKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYS-----------------ANANL----PD--ENK---G-- 535 (791)
T ss_pred hHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeeh-----------------hhcCC----Cc--ccc---C--
Confidence 433 24445679999999999999999999996321 00000 00 000 0
Q ss_pred ccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000160 787 FTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWN 866 (1992)
Q Consensus 787 ~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n 866 (1992)
...|..|... ....+...++..++.
T Consensus 536 -----------------------------------~~~C~lc~d~---aed~i~s~ChH~FCr----------------- 560 (791)
T KOG1002|consen 536 -----------------------------------EVECGLCHDP---AEDYIESSCHHKFCR----------------- 560 (791)
T ss_pred -----------------------------------ceeecccCCh---hhhhHhhhhhHHHHH-----------------
Confidence 0000000000 000000000000000
Q ss_pred hcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCcccc
Q 000160 867 SLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWC 946 (1992)
Q Consensus 867 ~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~ 946 (1992)
.|.. .|-...-.-..+.+|.|.+..... +.. |+.
T Consensus 561 --lCi~--eyv~~f~~~~nvtCP~C~i~LsiD----------lse-----------------------~al--------- 594 (791)
T KOG1002|consen 561 --LCIK--EYVESFMENNNVTCPVCHIGLSID----------LSE-----------------------PAL--------- 594 (791)
T ss_pred --HHHH--HHHHhhhcccCCCCcccccccccc----------ccc-----------------------hhh---------
Confidence 0000 000000111112333332210000 000 000
Q ss_pred CCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHHhhCC--CeEEEEeCchHH
Q 000160 947 SKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDG--HRALIFTQMTKM 1024 (1992)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kLks~G--~KVLIFSQ~t~m 1024 (1992)
.- ..+..++...+-.++...+ +..|.|+.+|.+-|..+.+.+ -|.|||||||.|
T Consensus 595 -----ek---------------~~l~~Fk~sSIlnRinm~~----~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSm 650 (791)
T KOG1002|consen 595 -----EK---------------TDLKGFKASSILNRINMDD----WQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSM 650 (791)
T ss_pred -----hh---------------cchhhhhhHHHhhhcchhh----hcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHH
Confidence 00 0000001111001111111 236899999999999998765 589999999999
Q ss_pred HHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHh
Q 000160 1025 LDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDR 1104 (1992)
Q Consensus 1025 LDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gR 1104 (1992)
||+|+-.|...|+.++.|+|+|++..|...|+.|.+|++|+|||+|.++||+.||||.|++|+++||||||+.+-||+||
T Consensus 651 LDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DR 730 (791)
T KOG1002|consen 651 LDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDR 730 (791)
T ss_pred HHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccCcCChhhhhc
Q 000160 1105 CHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFS 1164 (1992)
Q Consensus 1105 ahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~~~fk~~d~~eLF~ 1164 (1992)
+|||||.|||.|.||+.++||||+|+..|.+|..++...|++..-.-..++..|++-||+
T Consensus 731 iHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 731 IHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred HHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999976544333455555666664
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-75 Score=738.68 Aligned_cols=497 Identities=33% Similarity=0.515 Sum_probs=404.7
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHc------cCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCc----EEEEecCCc
Q 000160 446 KFPFLLKFPLREYQHIGLDWLVTMYE------KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGP----HLIVVPTSV 515 (1992)
Q Consensus 446 ~vP~lLk~~LRpYQ~~GL~WLvslye------~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP----~LIVVPtSL 515 (1992)
-+-++++..|||||++|+.||..... ...|+|+||+||||||+|+|+||..+.+....|+| .|||||.++
T Consensus 230 ~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sL 309 (776)
T KOG0390|consen 230 VIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSL 309 (776)
T ss_pred EecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHH
Confidence 34456678899999999999986542 34578999999999999999999999998777554 499999999
Q ss_pred HHHHHHHHHHHCC--CCeEEEEeCchhHHHHhhhccC----CCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccC
Q 000160 516 MLNWETEFLKWCP--AFKILTYFGSAKERKFKRQGWL----KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK 589 (1992)
Q Consensus 516 L~NWe~EfkKw~P--~lKVL~Y~Gs~keRk~kr~gw~----k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IK 589 (1992)
|.||..||.+|.. .+..+.++|..++.-.+...|. ..-.+-|+|.||+++..+...+....+++||+||+|+.|
T Consensus 310 v~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCcc
Confidence 9999999999986 5888999998876211111121 223567999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccccc----ccccHHHHHH
Q 000160 590 NWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQ----EKVNKEVVDR 665 (1992)
Q Consensus 590 N~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~----~~~~~e~v~r 665 (1992)
|..|++|++|..+++++|+||||||+||++.|++++++|..|+++++...|+..|..|+....... .....+.++.
T Consensus 390 N~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 390 NSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred chhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999885422211 0111445788
Q ss_pred HHHhhhHhhhhhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccC
Q 000160 666 LHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFE 745 (1992)
Q Consensus 666 LhkvLrpFmLRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe 745 (1992)
|..+...|++||+-....+.||+++++||.|.+|+.|+.+|..+.... ....+... .+..+..|+++||||.|+.
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~~----~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKGY----ALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhcc----hhhHHHHHHHHhcCHHhhc
Confidence 999999999999999999999999999999999999999999998764 33333222 5677889999999999852
Q ss_pred CCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccC
Q 000160 746 GRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVG 825 (1992)
Q Consensus 746 ~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~ 825 (1992)
.......
T Consensus 545 ~~~~~~~------------------------------------------------------------------------- 551 (776)
T KOG0390|consen 545 LCEKTEK------------------------------------------------------------------------- 551 (776)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 1100000
Q ss_pred CccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhcc
Q 000160 826 PFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLY 905 (1992)
Q Consensus 826 p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ 905 (1992)
...+ .+|.. ...
T Consensus 552 -----------------------------------------------e~~~----------~~~~~-----------~~~ 563 (776)
T KOG0390|consen 552 -----------------------------------------------EKAF----------KNPAL-----------LLD 563 (776)
T ss_pred -----------------------------------------------cccc----------cChHh-----------hhc
Confidence 0000 00000 000
Q ss_pred chhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhccccc
Q 000160 906 SSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYF 985 (1992)
Q Consensus 906 ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~f 985 (1992)
+.. ++
T Consensus 564 -----------------------------~~~---------------------~~------------------------- 568 (776)
T KOG0390|consen 564 -----------------------------PGK---------------------LK------------------------- 568 (776)
T ss_pred -----------------------------ccc---------------------cc-------------------------
Confidence 000 00
Q ss_pred CCcccc-ccccchHHHHHHHHHHHhhC-CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCC
Q 000160 986 PDRRLI-QFDCGKLQELAILLRKLKSD-GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPK 1063 (1992)
Q Consensus 986 Pd~rLi-q~dSgKLq~L~~LL~kLks~-G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ 1063 (1992)
.+.. ..-+|||..|..+|...+.. -.++++-++++.+||+++.+++.+|+.++||||+|+..|||.+|++||..+.
T Consensus 569 --~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~ 646 (776)
T KOG0390|consen 569 --LDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPES 646 (776)
T ss_pred --cccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCC
Confidence 0000 01379999999999666554 3688888899999999999999999999999999999999999999998655
Q ss_pred c-eEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Q 000160 1064 I-FLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDL 1142 (1992)
Q Consensus 1064 i-fVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~ 1142 (1992)
. ||||+|++|||+||||+||++||+||++|||+.+.|||+||||.||+|+||||||++.|||||+||++|..|..|..+
T Consensus 647 ~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~ 726 (776)
T KOG0390|consen 647 PSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSM 726 (776)
T ss_pred CceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhhe
Confidence 5 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccccCcCChhhhhcC
Q 000160 1143 VIQSGGYNTEFFKKLDPMELFSG 1165 (1992)
Q Consensus 1143 vIq~g~f~~~~fk~~d~~eLF~~ 1165 (1992)
|++........|...++..+|+.
T Consensus 727 v~~~~~~~~~~~~~~~~~~lf~~ 749 (776)
T KOG0390|consen 727 VFDEEEDVEKHFFTEDLKTLFDL 749 (776)
T ss_pred EEecccccccccchHHHHHHHhh
Confidence 99887665544444556666654
No 12
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.2e-75 Score=700.59 Aligned_cols=518 Identities=29% Similarity=0.470 Sum_probs=398.6
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHcc-CccEEEEcCCCChHHHHHHHHHHHHHHhc-------CCCCcEEEEec
Q 000160 441 TQVRTKFPFLLKFPLREYQHIGLDWLVTMYEK-RLNGILADEMGLGKTIMTIAMLAHLACEK-------GIWGPHLIVVP 512 (1992)
Q Consensus 441 t~vkt~vP~lLk~~LRpYQ~~GL~WLvslye~-~lgGILADEMGLGKTIQtIALLa~La~ek-------g~~GP~LIVVP 512 (1992)
..+.+.-|+.++..|.|||+.|+.||.....+ +.||||||+||||||+.+|++|+|-.... ....++|||||
T Consensus 312 et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P 391 (901)
T KOG4439|consen 312 ETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP 391 (901)
T ss_pred cccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc
Confidence 45667889999999999999999999977644 56999999999999999999999754431 12236999999
Q ss_pred CCcHHHHHHHHHHHCC--CCeEEEEeCchh-HHHHhhhccCCCCCceEEEEeehhhhh----------chhhhhccCccE
Q 000160 513 TSVMLNWETEFLKWCP--AFKILTYFGSAK-ERKFKRQGWLKPNSFHVCITTYRLIIQ----------DSKVFKRKKWKY 579 (1992)
Q Consensus 513 tSLL~NWe~EfkKw~P--~lKVL~Y~Gs~k-eRk~kr~gw~k~~~fdVVITSYe~l~q----------D~~~f~r~~W~~ 579 (1992)
.|+|.||+.||.+-.. .+.|++|||..+ +-..+ ....||||||||.++.. ....+.++.|.+
T Consensus 392 aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~-----~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~R 466 (901)
T KOG4439|consen 392 ASLIHQWEAEVARRLEQNALSVYLYHGPNKREISAK-----ELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSR 466 (901)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEecCCccccCCHH-----HHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHH
Confidence 9999999999998773 599999999985 21111 22579999999999987 245688999999
Q ss_pred EEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccccccccc
Q 000160 580 LILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVN 659 (1992)
Q Consensus 580 LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~ 659 (1992)
|||||||+|||.+++.+.+++.|.+..||+|||||+||++-|+|+|+.||...+|++...|++|+.++-.++
T Consensus 467 VILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g-------- 538 (901)
T KOG4439|consen 467 VILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG-------- 538 (901)
T ss_pred hhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999987654332
Q ss_pred HHHHHHHHHhhhHhhhhhhhhhhhh-----cCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHH---------hhcc--
Q 000160 660 KEVVDRLHNVLRPFILRRLKRDVEK-----QLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATL---------ASAN-- 723 (1992)
Q Consensus 660 ~e~v~rLhkvLrpFmLRRtK~DVek-----qLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L---------~sgn-- 723 (1992)
..||.-+.+++||||||..... .||.+...++.+.|+..+...|+-++.....-..- ..++
T Consensus 539 ---~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~ 615 (901)
T KOG4439|consen 539 ---ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQ 615 (901)
T ss_pred ---hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcc
Confidence 3678889999999999998876 79999999999999999999999877654321100 0011
Q ss_pred -------------------------------hhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccccccccCCC
Q 000160 724 -------------------------------FFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSP 772 (1992)
Q Consensus 724 -------------------------------~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~~~~l~~ 772 (1992)
...++.+|++|||+|+||.+.......-.|.+.+.
T Consensus 616 s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~-------------- 681 (901)
T KOG4439|consen 616 SRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGG-------------- 681 (901)
T ss_pred ccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCc--------------
Confidence 13478999999999999987543210000000000
Q ss_pred CCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHHHHHHHHHHH
Q 000160 773 SPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERR 852 (1992)
Q Consensus 773 ~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~e~r~ 852 (1992)
. ..+.... ...+ +.+..
T Consensus 682 -------------~------------~sde~~~-----------e~~~--------------------------l~el~- 698 (901)
T KOG4439|consen 682 -------------D------------DSDEEQL-----------EEDN--------------------------LAELE- 698 (901)
T ss_pred -------------c------------hhhhhhh-----------hhhH--------------------------HHhhh-
Confidence 0 0000000 0000 00000
Q ss_pred HHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhh
Q 000160 853 REAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMF 932 (1992)
Q Consensus 853 ~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~ 932 (1992)
. .....|.. -.|
T Consensus 699 ----k-------~~~T~~~~----------------D~~----------------------------------------- 710 (901)
T KOG4439|consen 699 ----K-------NDETDCSD----------------DNC----------------------------------------- 710 (901)
T ss_pred ----h-------cccccccc----------------ccc-----------------------------------------
Confidence 0 00000000 000
Q ss_pred cccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHH-hhC
Q 000160 933 AIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKL-KSD 1011 (1992)
Q Consensus 933 ~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kL-ks~ 1011 (1992)
...+ .. +. .+. |.. -+.|.|+..+...|..+ ...
T Consensus 711 --------------ed~p-~~-----~~--------------------~q~-Fe~----~r~S~Ki~~~l~~le~i~~~s 745 (901)
T KOG4439|consen 711 --------------EDLP-TA-----FP--------------------DQA-FEP----DRPSCKIAMVLEILETILTSS 745 (901)
T ss_pred --------------cccc-cc-----ch--------------------hhh-ccc----ccchhHHHHHHHHHHHHhhcc
Confidence 0000 00 00 000 000 12367888888888877 667
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEeccccccccCCccCCEEEEec
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILSTRSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D-~~ifVfLLSTrAGG~GLNLT~AdtVIfyD 1090 (1992)
.+|++|.|||+.+|+++...|...|+.|..++|...+.+|+.+++.||.. ++.+|+|||.-+||+||||++|||+|++|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 89999999999999999999999999999999999999999999999985 45999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CccccCcCChhhhhc
Q 000160 1091 SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY-NTEFFKKLDPMELFS 1164 (1992)
Q Consensus 1091 ~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f-~~~~fk~~d~~eLF~ 1164 (1992)
..|||+.++||.+|+||+||+|+|+||||++++|||++|...|..|..|...|+.|..- ...-++-.++.-||+
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LFg 900 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLFG 900 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999974322 123334444555664
No 13
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=6.3e-72 Score=682.80 Aligned_cols=598 Identities=29% Similarity=0.407 Sum_probs=412.3
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHH---------ccCccEEEEcCCCChHHHHHHHHHHH-HHHhcCCCCcEEEEecC
Q 000160 444 RTKFPFLLKFPLREYQHIGLDWLVTMY---------EKRLNGILADEMGLGKTIMTIAMLAH-LACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 444 kt~vP~lLk~~LRpYQ~~GL~WLvsly---------e~~lgGILADEMGLGKTIQtIALLa~-La~ekg~~GP~LIVVPt 513 (1992)
...+|..|-..|+|||..||.||+... ..+.|||||+-||||||+|+|+||.. |.|.+-.....|||||.
T Consensus 658 ~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~Pl 737 (1567)
T KOG1015|consen 658 LVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPL 737 (1567)
T ss_pred hhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcch
Confidence 456788888999999999999998433 34779999999999999999999975 56666667899999999
Q ss_pred CcHHHHHHHHHHHCCCCeEE----EE----eCchhHHHHhhhccCCCCCceEEEEeehhhhhc---------------hh
Q 000160 514 SVMLNWETEFLKWCPAFKIL----TY----FGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD---------------SK 570 (1992)
Q Consensus 514 SLL~NWe~EfkKw~P~lKVL----~Y----~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD---------------~~ 570 (1992)
+++.||..||.+|.+++... +| +-...+|....+.|...+ .|||.-|.+++.- ..
T Consensus 738 Nt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g--gVmIiGYdmyRnLa~gr~vk~rk~ke~f~k 815 (1567)
T KOG1015|consen 738 NTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG--GVMIIGYDMYRNLAQGRNVKSRKLKEIFNK 815 (1567)
T ss_pred HHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC--CEEEEehHHHHHHhcccchhhhHHHHHHHH
Confidence 99999999999999974332 22 223355666777888766 5999999988642 12
Q ss_pred hhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCC
Q 000160 571 VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISG 650 (1992)
Q Consensus 571 ~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g 650 (1992)
.+.+...++||+||||.|||.+|..++++..+.++||++||||||||||+|+|.|++|+.|+++++..+|.+.|.|||++
T Consensus 816 ~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~n 895 (1567)
T KOG1015|consen 816 ALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQN 895 (1567)
T ss_pred hccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCcccc
Confidence 34455799999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ccccccc-----ccHHHHHHHHHhhhHhhhhhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHH--H--hh
Q 000160 651 MVEGQEK-----VNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQAT--L--AS 721 (1992)
Q Consensus 651 ~~e~~~~-----~~~e~v~rLhkvLrpFmLRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~--L--~s 721 (1992)
..-.... .-.....-|+.+|..|+-|+--.-+.+.||||+++||.++||+.|+.||..|+. ..+... . ..
T Consensus 896 Gq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~~G~d~eg~~ 974 (1567)
T KOG1015|consen 896 GQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTGVGNDSEGGR 974 (1567)
T ss_pred CccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccccCCcccccc
Confidence 3221111 112334569999999999999999999999999999999999999999999987 222111 0 11
Q ss_pred cchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhh
Q 000160 722 ANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDE 801 (1992)
Q Consensus 722 gn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e 801 (1992)
|....++.-.--|+++-+||..+.-+.+... ....++..+...+- .. ..++
T Consensus 975 g~~arlf~dfqmlsrIwtHP~~lqL~s~~~e------------------nkR~~seddm~~fi----~D-------~sde 1025 (1567)
T KOG1015|consen 975 GAGARLFQDFQMLSRIWTHPWCLQLDSISKE------------------NKRYFSEDDMDEFI----AD-------DSDE 1025 (1567)
T ss_pred chhhhHHHHHHHHHHHhcCCCceeechhhhh------------------hcccccccchhccc----cC-------CCcc
Confidence 2233455666678999999987533211000 00000000000000 00 0000
Q ss_pred hhhhcCchhHHHHHhh-cccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhh
Q 000160 802 LNAIATPASLIKERAD-LNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSL 880 (1992)
Q Consensus 802 ~~~l~tp~~li~~~~~-l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l 880 (1992)
........+....... .....+ .........|.. .+.+.. .+...... ..|-...+..+...-.+
T Consensus 1026 ~e~s~~s~d~~~~~ks~~~s~~D---esss~~~~~g~~---ev~k~k----~rk~r~~~----~~~~~~~g~~~D~~l~l 1091 (1567)
T KOG1015|consen 1026 TEMSLSSDDYTKKKKSGKKSKKD---ESSSGSGSDGDV---EVIKVK----NRKSRGGG----EGNVDETGNNPDVSLKL 1091 (1567)
T ss_pred ccccccccchhhccccccccccc---ccccccccCCch---hhhhhh----hhhccccc----cCcccccCCCcchHHHH
Confidence 0000000000000000 000000 000000001100 000000 00000000 00000000000000000
Q ss_pred HhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchh
Q 000160 881 RELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYK 960 (1992)
Q Consensus 881 ~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~ 960 (1992)
.. .+.. . .+. ...|+|..|. +
T Consensus 1092 l~--dlag----------------------------------------~--~s~--~~d~ppew~k----------d--- 1112 (1567)
T KOG1015|consen 1092 LE--DLAG----------------------------------------S--SSN--PSDPPPEWYK----------D--- 1112 (1567)
T ss_pred hh--cccc----------------------------------------c--ccC--CCCCchHhHH----------h---
Confidence 00 0000 0 000 0011111110 0
Q ss_pred hhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHH------
Q 000160 961 EKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL------ 1034 (1992)
Q Consensus 961 ~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~------ 1034 (1992)
... - ...-+...||||-.|.++|+....-|.|+|||||....||+|+.||.+
T Consensus 1113 -~v~--------------------e-~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk 1170 (1567)
T KOG1015|consen 1113 -FVT--------------------E-ADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGK 1170 (1567)
T ss_pred -hhh--------------------h-hhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCc
Confidence 000 0 001122359999999999999999999999999999999999999963
Q ss_pred ----------------cCCcEEEecCCCCHHHHHHHHHHHhc--CCCceEEEEeccccccccCCccCCEEEEecCCCChh
Q 000160 1035 ----------------YGYTYMRLDGSTQPEERQTLMQRFNT--NPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPA 1096 (1992)
Q Consensus 1035 ----------------~Gi~y~RLDGsts~eqRq~lIerFN~--D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa 1096 (1992)
.|..|.||||+|...+|+++.++||. +-+.++||+||||||+||||.+||+|||||-.|||+
T Consensus 1171 ~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPS 1250 (1567)
T KOG1015|consen 1171 EDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPS 1250 (1567)
T ss_pred cccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCc
Confidence 36789999999999999999999997 678899999999999999999999999999999999
Q ss_pred hHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccCcCChhhhhcCCCCC
Q 000160 1097 MDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTL 1169 (1992)
Q Consensus 1097 ~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~~~fk~~d~~eLF~~~~~~ 1169 (1992)
.|.|+|=|+||+||||||+|||||+.||+||+||++|..|..+...|++..... ..|.+.++.+||+-...+
T Consensus 1251 yDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~-Rhy~~neLteLy~fep~~ 1322 (1567)
T KOG1015|consen 1251 YDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVE-RHYTMNELTELYTFEPDL 1322 (1567)
T ss_pred cchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHH-HHhhHhhhHHHhhcCCcc
Confidence 999999999999999999999999999999999999999999999999876554 355677888998865433
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-71 Score=744.84 Aligned_cols=494 Identities=42% Similarity=0.675 Sum_probs=413.3
Q ss_pred CCCCCCChHHHHHHHHHHH-HHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcHHHHHHHHHHH
Q 000160 449 FLLKFPLREYQHIGLDWLV-TMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 449 ~lLk~~LRpYQ~~GL~WLv-slye~~lgGILADEMGLGKTIQtIALLa~La~ekg~-~GP~LIVVPtSLL~NWe~EfkKw 526 (1992)
..+...||+||..|++||. .++....||||||+||||||+|+|+++.++...... .||+|||||++++.||.+||.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 6677899999999999999 899999999999999999999999999996665554 68999999999999999999999
Q ss_pred CCCCe-EEEEeCchhH----HHHhhhccCCC---CCceEEEEeehhhhh---chhhhhccCccEEEEcCccccCChhhHH
Q 000160 527 CPAFK-ILTYFGSAKE----RKFKRQGWLKP---NSFHVCITTYRLIIQ---DSKVFKRKKWKYLILDEAHLIKNWKSQR 595 (1992)
Q Consensus 527 ~P~lK-VL~Y~Gs~ke----Rk~kr~gw~k~---~~fdVVITSYe~l~q---D~~~f~r~~W~~LILDEAH~IKN~~Sq~ 595 (1992)
+|.++ ++.|+|.... +...+. +.+. ..|+|+||||+.+.+ ++..+....|+++|+||||+|||..+..
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~ 491 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRD-LLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSE 491 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHH-HhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHH
Confidence 99999 9999998863 322222 2222 238999999999999 9999999999999999999999999999
Q ss_pred HHHHHhcccceEEEEeccCCCCChHHHHHHHH-HhCCCCCC-ChHHHHHHhcCCCCCccccc-ccccHHHHHHHHHhhhH
Q 000160 596 WQTLLNFNSKRRILLTGTPLQNDLMELWSLMH-FLMPHIFQ-SHQEFKDWFCNPISGMVEGQ-EKVNKEVVDRLHNVLRP 672 (1992)
Q Consensus 596 ~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~-FL~P~if~-s~~eF~ewFs~Pi~g~~e~~-~~~~~e~v~rLhkvLrp 672 (1992)
++++..+++.+||+|||||+||++.|||+|++ |++|++++ +...|..||..|+....... .......+.+|+.+++|
T Consensus 492 ~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 492 GKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999 56999999999875332211 12233455669999999
Q ss_pred hhhhhhhhh--hhhcCCCceeEEEEecCCHHHHHHHHHHHHh---HHHH--HHHhhc--------chhhHHHHHHHHHHh
Q 000160 673 FILRRLKRD--VEKQLPMKQEHVIYCRLSKRQRNLYEDFIAS---SETQ--ATLASA--------NFFGMISVIMQLRKV 737 (1992)
Q Consensus 673 FmLRRtK~D--VekqLP~K~E~VV~c~LS~~Qr~LYdd~is~---~~t~--~~L~sg--------n~~silniLmqLRKv 737 (1992)
|+|||+|.+ |.+.||+|.+++++|.|+..|+.+|..+... .... ...... ....+++.+++||++
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 999999999 8999999999999999999999999999883 2221 111111 267899999999999
Q ss_pred hCCCcccCCCC-cccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHh
Q 000160 738 CNHPDLFEGRP-IVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERA 816 (1992)
Q Consensus 738 CNHP~Lfe~r~-i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~ 816 (1992)
||||.++..+. ....
T Consensus 652 ~~~p~l~~~~~~~~~~---------------------------------------------------------------- 667 (866)
T COG0553 652 CNHPALVDEGLEATFD---------------------------------------------------------------- 667 (866)
T ss_pred ccCccccccccccccc----------------------------------------------------------------
Confidence 99999975430 0000
Q ss_pred hcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhh
Q 000160 817 DLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQ 896 (1992)
Q Consensus 817 ~l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~ 896 (1992)
... . ..++.. ....
T Consensus 668 ---------------------~~~----~---------------------~~~~~~---------~~~~----------- 681 (866)
T COG0553 668 ---------------------RIV----L---------------------LLREDK---------DFDY----------- 681 (866)
T ss_pred ---------------------hhh----h---------------------hhhccc---------cccc-----------
Confidence 000 0 000000 0000
Q ss_pred hhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchh
Q 000160 897 KTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRP 976 (1992)
Q Consensus 897 ~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~ 976 (1992)
T Consensus 682 -------------------------------------------------------------------------------- 681 (866)
T COG0553 682 -------------------------------------------------------------------------------- 681 (866)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccccCCcccccccc-chHHHHHHHH-HHHhhCCC--eEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHH
Q 000160 977 AIVRRQVYFPDRRLIQFDC-GKLQELAILL-RKLKSDGH--RALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQ 1052 (1992)
Q Consensus 977 ~~~~~~~~fPd~rLiq~dS-gKLq~L~~LL-~kLks~G~--KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq 1052 (1992)
....+...| +|++.+.++| ..++..|+ |||||+||+.|+++|+.+|...++.|+++||+++..+|+
T Consensus 682 ----------~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~ 751 (866)
T COG0553 682 ----------LKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQ 751 (866)
T ss_pred ----------ccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHH
Confidence 000012246 9999999999 89999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1053 TLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1053 ~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
.++++||+++.++||++|+++||+|||||+|++||+||+||||+.+.||++|||||||+++|.||||++++||||+|+.+
T Consensus 752 ~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~ 831 (866)
T COG0553 752 ELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILEL 831 (866)
T ss_pred HHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCCccccCcCChhhhh
Q 000160 1133 ANQKRALDDLVIQS-GGYNTEFFKKLDPMELF 1163 (1992)
Q Consensus 1133 a~qKr~L~~~vIq~-g~f~~~~fk~~d~~eLF 1163 (1992)
+..|+.+...++++ +.-....+...++..||
T Consensus 832 ~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 863 (866)
T COG0553 832 QEKKQELLDSLIDAEGEKELSKLSIEDLLDLF 863 (866)
T ss_pred HHHHHHHHHHHhhhhcccchhhccHHHHHHHh
Confidence 99999999999985 44333334444444444
No 15
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1e-59 Score=601.07 Aligned_cols=531 Identities=30% Similarity=0.457 Sum_probs=395.5
Q ss_pred HhhcCCCCCCccccccccccCCCCCCCCChHHHHHHHHHHHHHHc-cCccEEEEcCCCChHHHHHHHHHHHHHHhcC---
Q 000160 427 AARSAQPTGITFSTTQVRTKFPFLLKFPLREYQHIGLDWLVTMYE-KRLNGILADEMGLGKTIMTIAMLAHLACEKG--- 502 (1992)
Q Consensus 427 ~a~s~qP~G~t~~tt~vkt~vP~lLk~~LRpYQ~~GL~WLvslye-~~lgGILADEMGLGKTIQtIALLa~La~ekg--- 502 (1992)
.+.+++|.+ ...+| .+|..+..|+..+.. ...||||||+||||||++||+++........
T Consensus 121 ~~~~~~~~~--------~~~~p--------~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~ 184 (674)
T KOG1001|consen 121 KANKISPKN--------TLRFP--------LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEED 184 (674)
T ss_pred hhhccCCcc--------cccCC--------HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchh
Confidence 566777877 12333 455555444444432 2459999999999999999999986544333
Q ss_pred ---CCCcEEEEecCCcHHHHHHHHHHHCC--CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCc
Q 000160 503 ---IWGPHLIVVPTSVMLNWETEFLKWCP--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKW 577 (1992)
Q Consensus 503 ---~~GP~LIVVPtSLL~NWe~EfkKw~P--~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W 577 (1992)
..+.+|||||++++.||..|+.+..+ .+.|++||| +. ..+.....++||||||.++.. ..+..+.|
T Consensus 185 ~~~~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g--r~-----kd~~el~~~dVVltTy~il~~--~~l~~i~w 255 (674)
T KOG1001|consen 185 RQKEFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG--RT-----KDKSELNSYDVVLTTYDILKN--SPLVKIKW 255 (674)
T ss_pred hccccCceeEecchHHHHHHHHHHhccCCccceEEEEecc--cc-----cccchhcCCceEEeeHHHhhc--ccccceeE
Confidence 45679999999999999999966553 588999999 11 123345788999999999986 56777999
Q ss_pred cEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccccccc
Q 000160 578 KYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEK 657 (1992)
Q Consensus 578 ~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~ 657 (1992)
.+||+||||+|+|.+++.++++..+.+.+||+|||||+||++.+||+++.|+.-++|.....|...+..|+....
T Consensus 256 ~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~----- 330 (674)
T KOG1001|consen 256 LRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNK----- 330 (674)
T ss_pred EEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999988875321
Q ss_pred ccHHHHHHHHHhhhHhhhhhhhhhh-----hhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHH------HHhhcchhh
Q 000160 658 VNKEVVDRLHNVLRPFILRRLKRDV-----EKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQA------TLASANFFG 726 (1992)
Q Consensus 658 ~~~e~v~rLhkvLrpFmLRRtK~DV-----ekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~------~L~sgn~~s 726 (1992)
....+.++..+|+++++||+|..- ...|||+...++.|.++..++.+|..+......+. .....+|..
T Consensus 331 -~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~ 409 (674)
T KOG1001|consen 331 -YKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAF 409 (674)
T ss_pred -HHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHH
Confidence 156778999999999999999632 23699999999999999999999998877655432 223457888
Q ss_pred HHHHHHHHHHhhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhc
Q 000160 727 MISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIA 806 (1992)
Q Consensus 727 ilniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~ 806 (1992)
++..+.+||++|+||.|+-.........
T Consensus 410 ~l~~lLrlrq~c~h~~lv~~~~~~~~~~---------------------------------------------------- 437 (674)
T KOG1001|consen 410 FLKNLLRLRQACDHSLLVMYEMDSLGDS---------------------------------------------------- 437 (674)
T ss_pred HHHHHHHHHHHccchHhhhhhhhccccc----------------------------------------------------
Confidence 9999999999999999863321000000
Q ss_pred CchhHHHHHhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhc
Q 000160 807 TPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTV 886 (1992)
Q Consensus 807 tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~ 886 (1992)
...+..... ...++... .++...|. .+..-+..|
T Consensus 438 --------------------------~~~~~~~~~-------------~i~~l~~~-~~c~ic~~------~~~~~it~c 471 (674)
T KOG1001|consen 438 --------------------------GSAAALIIR-------------LIVDLSVS-HWCHICCD------LDSFFITRC 471 (674)
T ss_pred --------------------------cccchHHHH-------------HHHHHhhc-cccccccc------cccceeecc
Confidence 000000000 00000000 12221111 122223445
Q ss_pred CCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccc
Q 000160 887 KHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEV 966 (1992)
Q Consensus 887 ~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~ 966 (1992)
.|.+|..|....-..... +|+|.|.........+...
T Consensus 472 ~h~~c~~c~~~~i~~~~~----------------------------------~~~~~cr~~l~~~~l~s~~--------- 508 (674)
T KOG1001|consen 472 GHDFCVECLKKSIQQSEN----------------------------------APCPLCRNVLKEKKLLSAN--------- 508 (674)
T ss_pred cchHHHHHHHhccccccC----------------------------------CCCcHHHHHHHHHHHhhcc---------
Confidence 676666554322111100 0222221110000000000
Q ss_pred cCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHHhhCCC-eEEEEeCchHHHHHHHHHHHHcCCcEEEecCC
Q 000160 967 LSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGH-RALIFTQMTKMLDILEEFISLYGYTYMRLDGS 1045 (1992)
Q Consensus 967 ~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kLks~G~-KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGs 1045 (1992)
++...... ..+ .+.|+..+..+|...+.... ++||||||+.++++++..|...|+.|.+++|.
T Consensus 509 ------~~~~~~~~---~~~-------~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~ 572 (674)
T KOG1001|consen 509 ------PLPSIIND---LLP-------ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGE 572 (674)
T ss_pred ------cccchhhh---ccc-------hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhh
Confidence 00000000 000 47899999999986655555 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCH
Q 000160 1046 TQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1125 (1992)
Q Consensus 1046 ts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1125 (1992)
+...+|...+..|+.++.+.|+|+|+++||+||||+.|++||++||+|||+++.||++|||||||+|+|.|+||+..+||
T Consensus 573 ~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtv 652 (674)
T KOG1001|consen 573 MLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTV 652 (674)
T ss_pred hHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000160 1126 EENILKKANQKRALDDLVIQ 1145 (1992)
Q Consensus 1126 EErIlkra~qKr~L~~~vIq 1145 (1992)
||+|++.++.|+.+...+..
T Consensus 653 eer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 653 EERILKIQEKKREYNASAFG 672 (674)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999887764
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=6.5e-59 Score=559.64 Aligned_cols=536 Identities=28% Similarity=0.443 Sum_probs=374.5
Q ss_pred CCCCCChHHHHHHHHHHHH-------HHc--cCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHH
Q 000160 450 LLKFPLREYQHIGLDWLVT-------MYE--KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 520 (1992)
Q Consensus 450 lLk~~LRpYQ~~GL~WLvs-------lye--~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe 520 (1992)
.|...|+|||+-|++||+. .|. .+.|||||+-||||||+|+|+|+--+.+ +...+.+|+|||-.++.||-
T Consensus 250 qla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNTlQNWl 328 (1387)
T KOG1016|consen 250 QLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINTLQNWL 328 (1387)
T ss_pred hhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHHHHHHH
Confidence 3456799999999999863 332 3669999999999999999999887765 45567899999999999999
Q ss_pred HHHHHHCCC-----------CeEEEEeCchhH---HHHhhhccCCCCCceEEEEeehhhhhc------------------
Q 000160 521 TEFLKWCPA-----------FKILTYFGSAKE---RKFKRQGWLKPNSFHVCITTYRLIIQD------------------ 568 (1992)
Q Consensus 521 ~EfkKw~P~-----------lKVL~Y~Gs~ke---Rk~kr~gw~k~~~fdVVITSYe~l~qD------------------ 568 (1992)
.||..|.|. |+|++.....+. |......|...++ |++.-|++++--
T Consensus 329 sEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GG--VlLvGYemfRLL~lk~~~~~grpkkt~kr~ 406 (1387)
T KOG1016|consen 329 SEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGG--VLLVGYEMFRLLILKTLPKKGRPKKTLKRI 406 (1387)
T ss_pred HHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCC--EEEehHHHHHHHHHhcccccCCcccccccc
Confidence 999999985 677777655543 4444556876665 899999887422
Q ss_pred --------------------hhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHH
Q 000160 569 --------------------SKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHF 628 (1992)
Q Consensus 569 --------------------~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~F 628 (1992)
..+|-+-..++||+||+|+|||.....+.+|.+++++||+.|||-||||||-|.|.|+.|
T Consensus 407 ~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDF 486 (1387)
T KOG1016|consen 407 SSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDF 486 (1387)
T ss_pred CCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhhee
Confidence 111333458999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCChHHHHHHhcCCCCCccc-ccc----cccHHHHHHHHHhhhHhhhhhhhhhhhhcCCCceeEEEEecCCHHHH
Q 000160 629 LMPHIFQSHQEFKDWFCNPISGMVE-GQE----KVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQR 703 (1992)
Q Consensus 629 L~P~if~s~~eF~ewFs~Pi~g~~e-~~~----~~~~e~v~rLhkvLrpFmLRRtK~DVekqLP~K~E~VV~c~LS~~Qr 703 (1992)
+.|..++++.+|...|..||.+..- ... ..-.....-||.+|..|+-||+..-+.+.||.|+|+||.+++|..||
T Consensus 487 VRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR 566 (1387)
T KOG1016|consen 487 VRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQR 566 (1387)
T ss_pred ccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHH
Confidence 9999999999999999999853211 110 11122345599999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHhhcchhhHHHHHHHH---HHhhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhh
Q 000160 704 NLYEDFIASSETQATLASANFFGMISVIMQL---RKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADL 780 (1992)
Q Consensus 704 ~LYdd~is~~~t~~~L~sgn~~silniLmqL---RKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl 780 (1992)
.||+.||...... .+..+ ..++|-|+.+ -|+-|||+.+... +....
T Consensus 567 ~LY~~Fm~d~~r~--~~~~~-~~~~NPLkAF~vCcKIWNHPDVLY~~----------------------l~k~~------ 615 (1387)
T KOG1016|consen 567 QLYRNFMLDAKRE--IAANN-DAVFNPLKAFSVCCKIWNHPDVLYRL----------------------LEKKK------ 615 (1387)
T ss_pred HHHHHHHHHHHHh--hcccc-ccccChHHHHHHHHHhcCChHHHHHH----------------------HHHhh------
Confidence 9999999543221 12222 2234444444 4555999874210 00000
Q ss_pred ccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhh
Q 000160 781 KGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRAS 860 (1992)
Q Consensus 781 ~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~ 860 (1992)
.++-..+ +..+++
T Consensus 616 ------------------------~a~e~dl---------------------------------------~vee~~---- 628 (1387)
T KOG1016|consen 616 ------------------------RAEEDDL---------------------------------------RVEEMK---- 628 (1387)
T ss_pred ------------------------hhhhhhh---------------------------------------hHHHHh----
Confidence 0000000 000000
Q ss_pred hhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCC
Q 000160 861 SVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAP 940 (1992)
Q Consensus 861 ~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap 940 (1992)
......+|......+.+- -..+..+ .....+.. ........+|
T Consensus 629 --~ag~~~~~~P~~~~~~~~--s~~laSs----~~k~~n~t-----------------------------~kp~~s~~~p 671 (1387)
T KOG1016|consen 629 --FAGLQQQQSPFNSIPSNP--STPLASS----TSKSANKT-----------------------------KKPRGSKKAP 671 (1387)
T ss_pred --hhcccccCCCCCCCCCCC--CCcccch----hhhhhccc-----------------------------CCcccCcCCC
Confidence 000011121100000000 0000000 00000000 0000000011
Q ss_pred CCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHHhhCCCeEEEEeC
Q 000160 941 APVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQ 1020 (1992)
Q Consensus 941 ~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kLks~G~KVLIFSQ 1020 (1992)
. +.-..+....+ ..|. ..++..+. .-+--.+.|+-.+..+|..-..-|.|+|||||
T Consensus 672 ~--f~ee~~e~~~y--~~w~-------~el~~nYq-------------~gvLen~pk~V~~~~~~des~~~g~kil~fSq 727 (1387)
T KOG1016|consen 672 K--FDEEDEEVEKY--SDWT-------FELFENYQ-------------EGVLENGPKIVISLEILDESTQIGEKILIFSQ 727 (1387)
T ss_pred C--cccccccccch--hhHH-------HHHHhhhh-------------cccccCCCceEEEEeeeccccccCceEEEeec
Confidence 0 00000000000 0000 00000000 00111345666666777666677999999999
Q ss_pred chHHHHHHHHHHHHc------------------CCcEEEecCCCCHHHHHHHHHHHhcCCCce-EEEEeccccccccCCc
Q 000160 1021 MTKMLDILEEFISLY------------------GYTYMRLDGSTQPEERQTLMQRFNTNPKIF-LFILSTRSGGVGINLV 1081 (1992)
Q Consensus 1021 ~t~mLDILe~~L~~~------------------Gi~y~RLDGsts~eqRq~lIerFN~D~~if-VfLLSTrAGG~GLNLT 1081 (1992)
....||+|+.+|..+ +..|+|+||+|+...|.++|++||..+.+. .|+||||+|..||||.
T Consensus 728 ~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLI 807 (1387)
T KOG1016|consen 728 NLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLI 807 (1387)
T ss_pred chhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceee
Confidence 999999999999754 346999999999999999999999988776 8999999999999999
Q ss_pred cCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 000160 1082 GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSG 1147 (1992)
Q Consensus 1082 ~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g 1147 (1992)
+|+++|+||.-|||..++||+.|++|+||+|+++|||||+.+|+|-+||.+|-.|..|.+.|+++-
T Consensus 808 sanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~ 873 (1387)
T KOG1016|consen 808 SANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDA 873 (1387)
T ss_pred ccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999653
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=8.8e-55 Score=510.94 Aligned_cols=422 Identities=27% Similarity=0.403 Sum_probs=330.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHC
Q 000160 448 PFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWC 527 (1992)
Q Consensus 448 P~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~ 527 (1992)
|.-|-..|.|||++||.+.+. ++...|||||||||||||+|++..+...+ +|.|||||+||...|..+|.+|+
T Consensus 192 d~kLvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r~l 264 (689)
T KOG1000|consen 192 DPKLVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNRFL 264 (689)
T ss_pred CHHHHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHHhc
Confidence 444556799999999999776 46677999999999999999988776543 59999999999999999999999
Q ss_pred CCC-eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc--cc
Q 000160 528 PAF-KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF--NS 604 (1992)
Q Consensus 528 P~l-KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L--~a 604 (1992)
|.. .|.+..+.+..-. .-+....|.|.||+++..-+..+...+|.+||+||+|++|+.++++.+++..+ .+
T Consensus 265 ps~~pi~vv~~~~D~~~------~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 265 PSIHPIFVVDKSSDPLP------DVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVA 338 (689)
T ss_pred ccccceEEEecccCCcc------ccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHh
Confidence 974 3455555443211 11123469999999999999999999999999999999999999999999887 78
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhH-hhhhhhhhhhh
Q 000160 605 KRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRP-FILRRLKRDVE 683 (1992)
Q Consensus 605 ~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrp-FmLRRtK~DVe 683 (1992)
.|.+||||||--..+.|||..+..+.|.+|....+|-..||+--. +....+...-.+...|+-+|.. .|+||+|.+|.
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~-vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQ-VRFCFDYKGCTNLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccc-cceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999997432 1222333334456788888865 58999999999
Q ss_pred hcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCccccccccccccccc
Q 000160 684 KQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLS 763 (1992)
Q Consensus 684 kqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~ 763 (1992)
+|||+|...|++ -..+++-..-+++...... +... + .|+-.+.|
T Consensus 418 ~qLPpKrr~Vv~-~~~gr~da~~~~lv~~a~~------~t~~---~-~~e~~~~~------------------------- 461 (689)
T KOG1000|consen 418 KQLPPKRREVVY-VSGGRIDARMDDLVKAAAD------YTKV---N-SMERKHES------------------------- 461 (689)
T ss_pred hhCCccceEEEE-EcCCccchHHHHHHHHhhh------cchh---h-hhhhhhHH-------------------------
Confidence 999999554444 3444444333333221100 0000 0 00000000
Q ss_pred ccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHH
Q 000160 764 SSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKI 843 (1992)
Q Consensus 764 s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l 843 (1992)
T Consensus 462 -------------------------------------------------------------------------------- 461 (689)
T KOG1000|consen 462 -------------------------------------------------------------------------------- 461 (689)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHh
Q 000160 844 RKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRM 923 (1992)
Q Consensus 844 ~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l 923 (1992)
.+.+++.
T Consensus 462 -----------------l~l~y~~-------------------------------------------------------- 468 (689)
T KOG1000|consen 462 -----------------LLLFYSL-------------------------------------------------------- 468 (689)
T ss_pred -----------------HHHHHHH--------------------------------------------------------
Confidence 0000000
Q ss_pred hhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHH
Q 000160 924 IGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAI 1003 (1992)
Q Consensus 924 ~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~ 1003 (1992)
..-.|+..+.+
T Consensus 469 ---------------------------------------------------------------------tgiaK~~av~e 479 (689)
T KOG1000|consen 469 ---------------------------------------------------------------------TGIAKAAAVCE 479 (689)
T ss_pred ---------------------------------------------------------------------hcccccHHHHH
Confidence 00112222222
Q ss_pred HHHH----HhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccC
Q 000160 1004 LLRK----LKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGIN 1079 (1992)
Q Consensus 1004 LL~k----Lks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLN 1079 (1992)
.|.. .-+.+.|+|||.....|||-|+.+++.+++.++||||+|+...|+.+++.|+.+.++.|-|||..+||+||+
T Consensus 480 yi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 480 YILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred HHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 2222 234678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000160 1080 LVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDD 1141 (1992)
Q Consensus 1080 LT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~ 1141 (1992)
|++|+.|+|.+..|||....||.||+||||||.-|.||+||+++|++|.+|.+.++|.....
T Consensus 560 ~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~ 621 (689)
T KOG1000|consen 560 LTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLG 621 (689)
T ss_pred eeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999987544
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.8e-53 Score=556.63 Aligned_cols=430 Identities=20% Similarity=0.246 Sum_probs=323.4
Q ss_pred CCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCC
Q 000160 451 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAF 530 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~l 530 (1992)
.+..|.|||...+.++...+ ..+.||||||||||||++++++..+.. .|..+|+|||||++|+.||..|+.+|+. +
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF~-l 224 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRFN-L 224 (956)
T ss_pred CCCCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHhC-C
Confidence 34679999999998876643 567899999999999999988887754 5777899999999999999999987763 4
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhch---hhhhccCccEEEEcCccccCCh---hhHHHHHHHhc--
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS---KVFKRKKWKYLILDEAHLIKNW---KSQRWQTLLNF-- 602 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~---~~f~r~~W~~LILDEAH~IKN~---~Sq~~qaLl~L-- 602 (1992)
.+.+|.+..-.. ....+......++++|+||..+.++. ..+....|++|||||||+|+|. .|+.++.+..+
T Consensus 225 ~~~i~~~~~~~~-~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 225 RFSLFDEERYAE-AQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CeEEEcCcchhh-hcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 455554443221 11111112235789999999999864 4466779999999999999953 57788999877
Q ss_pred ccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcC--CCCCcc----cccccccH----------------
Q 000160 603 NSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCN--PISGMV----EGQEKVNK---------------- 660 (1992)
Q Consensus 603 ~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~--Pi~g~~----e~~~~~~~---------------- 660 (1992)
++.++|||||||+||++.|+|++|+||+|+.|.++..|....+. |+...+ .+.. .+.
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~-~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK-LSDDALNALGELLGEQDIE 382 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc-CCHHHHHHHHHHhcccchh
Confidence 67899999999999999999999999999999999999875542 221000 0000 000
Q ss_pred ------------------HHHHHHHH--hhhHhhhhhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHh
Q 000160 661 ------------------EVVDRLHN--VLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLA 720 (1992)
Q Consensus 661 ------------------e~v~rLhk--vLrpFmLRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~ 720 (1992)
..+..|.. -...+|+|+++.+|. .+|.+..+.+.+++... |...+..
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~----y~~~~~~-------- 449 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ----YQTAIKV-------- 449 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH----HHHHHHH--------
Confidence 01111110 123678999999986 59999999999999764 3332211
Q ss_pred hcchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchh
Q 000160 721 SANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESD 800 (1992)
Q Consensus 721 sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~ 800 (1992)
.....+++ |.+|.-
T Consensus 450 --------~~~~~~~~-~l~pe~--------------------------------------------------------- 463 (956)
T PRK04914 450 --------SLEARARD-MLYPEQ--------------------------------------------------------- 463 (956)
T ss_pred --------hHHHHHHh-hcCHHH---------------------------------------------------------
Confidence 00011111 111100
Q ss_pred hhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhh
Q 000160 801 ELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSL 880 (1992)
Q Consensus 801 e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l 880 (1992)
++..
T Consensus 464 --------------------------------------~~~~-------------------------------------- 467 (956)
T PRK04914 464 --------------------------------------IYQE-------------------------------------- 467 (956)
T ss_pred --------------------------------------HHHH--------------------------------------
Confidence 0000
Q ss_pred HhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchh
Q 000160 881 RELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYK 960 (1992)
Q Consensus 881 ~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~ 960 (1992)
+.. ..
T Consensus 468 ------------------------------------------~~~-~~-------------------------------- 472 (956)
T PRK04914 468 ------------------------------------------FED-NA-------------------------------- 472 (956)
T ss_pred ------------------------------------------Hhh-hh--------------------------------
Confidence 000 00
Q ss_pred hhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHH-HHcCCcE
Q 000160 961 EKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFI-SLYGYTY 1039 (1992)
Q Consensus 961 ~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L-~~~Gi~y 1039 (1992)
......+|+..|..+|+.+. +.||||||++..+++.|...| ...||++
T Consensus 473 -----------------------------~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~ 521 (956)
T PRK04914 473 -----------------------------TWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALREREGIRA 521 (956)
T ss_pred -----------------------------hccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhccCeeE
Confidence 00012468999999998763 789999999999999999999 5789999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCC-CceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEE
Q 000160 1040 MRLDGSTQPEERQTLMQRFNTNP-KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYR 1118 (1992)
Q Consensus 1040 ~RLDGsts~eqRq~lIerFN~D~-~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYR 1118 (1992)
+.|+|+++..+|++++++|+.+. .++| |++|.+||+|+||+.|++||+||+||||....||+||+|||||+++|.||+
T Consensus 522 ~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 522 AVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred EEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999753 6666 567799999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 000160 1119 LISESTIEENILKKANQKRALDDLVIQSGG 1148 (1992)
Q Consensus 1119 LIse~TIEErIlkra~qKr~L~~~vIq~g~ 1148 (1992)
++.++|++++|++...+|..+.+.++..|.
T Consensus 601 ~~~~~t~~e~i~~~~~~~l~ife~~~~~~~ 630 (956)
T PRK04914 601 PYLEGTAQERLFRWYHEGLNAFEHTCPTGR 630 (956)
T ss_pred ccCCCCHHHHHHHHHhhhcCceeccCCCHH
Confidence 999999999999999999988887776554
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3e-54 Score=542.90 Aligned_cols=383 Identities=41% Similarity=0.674 Sum_probs=340.7
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeE
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKI 532 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKV 532 (1992)
++|.+||.+|++||...+..+..+|||||||||||+|+|.++.++.......||+||++|.+.+.||++||..|+|.+.|
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~v 373 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFYV 373 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCccc
Confidence 89999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred EEEeCchhHHHHhhhccC-------------------CCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhh
Q 000160 533 LTYFGSAKERKFKRQGWL-------------------KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKS 593 (1992)
Q Consensus 533 L~Y~Gs~keRk~kr~gw~-------------------k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~S 593 (1992)
.+|+|+.+.|...+.--. ..-.|+|..|||++...+...+..+.|..+|+||+|+|||..|
T Consensus 374 v~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde~~rlkn~~s 453 (696)
T KOG0383|consen 374 VPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDEAHRLKNKQS 453 (696)
T ss_pred ccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEeechhhcccchh
Confidence 999999998877654110 1235899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHh
Q 000160 594 QRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPF 673 (1992)
Q Consensus 594 q~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpF 673 (1992)
.+.+.+-.....+++||||||+||++.+|++|||||.|..|.+...|.+.|.. ....+.+..||.++.|+
T Consensus 454 ~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d----------~~~~~~~~~l~~l~~p~ 523 (696)
T KOG0383|consen 454 KRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHD----------ISCEEQIKKLHLLLCPH 523 (696)
T ss_pred hhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcch----------hhHHHHHHhhccccCch
Confidence 99999999999999999999999999999999999999999999999887754 23567889999999999
Q ss_pred hhhhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCccccc
Q 000160 674 ILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSF 753 (1992)
Q Consensus 674 mLRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f 753 (1992)
||||.|.||.+.+|.|++-++.+.|++.|+.+|..++.+.- ...++.++..+++|++|+|||+||||++|..+.-..
T Consensus 524 ~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~-~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~-- 600 (696)
T KOG0383|consen 524 MLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNW-QGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEEPLE-- 600 (696)
T ss_pred hhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCCh-HHHhhcchhHHHHHHHHHHHHhhcCcccCccccccc--
Confidence 99999999999999999999999999999999998876543 234457888999999999999999999975310000
Q ss_pred ccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccc
Q 000160 754 DMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKR 833 (1992)
Q Consensus 754 ~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~ 833 (1992)
T Consensus 601 -------------------------------------------------------------------------------- 600 (696)
T KOG0383|consen 601 -------------------------------------------------------------------------------- 600 (696)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhc
Q 000160 834 LNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIV 913 (1992)
Q Consensus 834 ~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v 913 (1992)
.++...
T Consensus 601 ~~~~~~-------------------------------------------------------------------------- 606 (696)
T KOG0383|consen 601 ENGEYL-------------------------------------------------------------------------- 606 (696)
T ss_pred cchHHH--------------------------------------------------------------------------
Confidence 000000
Q ss_pred cChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCcccccc
Q 000160 914 LSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQF 993 (1992)
Q Consensus 914 ~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~ 993 (1992)
. ..+.-
T Consensus 607 ----------~----------------------------------------------------------------~~l~k 612 (696)
T KOG0383|consen 607 ----------G----------------------------------------------------------------SALIK 612 (696)
T ss_pred ----------H----------------------------------------------------------------HHHHH
Confidence 0 00012
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEecc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTR 1072 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTr 1072 (1992)
.|||+..|..+++++++.|||||||+||+.|||+|+.+|.+.| .|.||||+.....||+++++||. ++.-||||+|||
T Consensus 613 ~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstr 691 (696)
T KOG0383|consen 613 ASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTR 691 (696)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecc
Confidence 4799999999999999999999999999999999999999999 99999999999999999999995 788999999999
Q ss_pred ccccc
Q 000160 1073 SGGVG 1077 (1992)
Q Consensus 1073 AGG~G 1077 (1992)
+||+|
T Consensus 692 a~g~g 696 (696)
T KOG0383|consen 692 AGGLG 696 (696)
T ss_pred cccCC
Confidence 99998
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=6.3e-45 Score=430.79 Aligned_cols=277 Identities=39% Similarity=0.701 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHH---------ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCC--cEEEEecCCcHHHHHHHHHHH
Q 000160 458 YQHIGLDWLVTMY---------EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWG--PHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 458 YQ~~GL~WLvsly---------e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~G--P~LIVVPtSLL~NWe~EfkKw 526 (1992)
||+.||+||+.++ ....|||||||||||||+++|+++.++......++ ++|||||++++.||..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 77889999999999999999999998876554443 799999999999999999999
Q ss_pred C-C-CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhh-----hchhhhhccCccEEEEcCccccCChhhHHHHHH
Q 000160 527 C-P-AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLII-----QDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTL 599 (1992)
Q Consensus 527 ~-P-~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~-----qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaL 599 (1992)
+ | .+++++|.|....+... ......++|+||||+.+. .....+...+|++||+||||++||..+.+++++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS---KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT---SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccccccccccccccccccc---ccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 9 4 68999999987333222 223467899999999999 667778888999999999999999999999999
Q ss_pred HhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhh
Q 000160 600 LNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLK 679 (1992)
Q Consensus 600 l~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK 679 (1992)
..+++.+||+|||||++|++.|||++++||.|+.+.....|..+|..+ ..........+|..++++|++||++
T Consensus 158 ~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~-------~~~~~~~~~~~L~~~l~~~~~r~~~ 230 (299)
T PF00176_consen 158 RKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP-------DKENSYENIERLRELLSEFMIRRTK 230 (299)
T ss_dssp HCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH-------HHTHHHHHHHHHHHHHCCCEECHCG
T ss_pred cccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh-------ccccccccccccccccchhhhhhhc
Confidence 999999999999999999999999999999999999999999998665 2234556778999999999999999
Q ss_pred hhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHH----HHhhcchhhHHHHHHHHHHhhCCCccc
Q 000160 680 RDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQA----TLASANFFGMISVIMQLRKVCNHPDLF 744 (1992)
Q Consensus 680 ~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~----~L~sgn~~silniLmqLRKvCNHP~Lf 744 (1992)
.++...||++.++++.|+||+.|+.+|+++........ ....++...++..+++|||+||||+|+
T Consensus 231 ~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 231 KDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp GGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 99988999999999999999999999998876554321 124467788999999999999999873
No 21
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=4.4e-41 Score=429.69 Aligned_cols=259 Identities=24% Similarity=0.362 Sum_probs=204.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHh---------------cCCCCcEEEEecCCcHHHHHHHHHHHCCCC-eEEEEeCc
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLACE---------------KGIWGPHLIVVPTSVMLNWETEFLKWCPAF-KILTYFGS 538 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~e---------------kg~~GP~LIVVPtSLL~NWe~EfkKw~P~l-KVL~Y~Gs 538 (1992)
.|++|||||+|||+..+++..+.... ....|.||||||.+++.||-.||.+||+.+ ||+.|+|-
T Consensus 376 ~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~Gi 455 (1394)
T KOG0298|consen 376 RVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYFGI 455 (1394)
T ss_pred ceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEech
Confidence 46999999999999999887653110 112489999999999999999999999876 99999998
Q ss_pred hhHHHHhhhccCCCCCceEEEEeehhhhhchh----------------------hhhccCccEEEEcCccccCChhhHHH
Q 000160 539 AKERKFKRQGWLKPNSFHVCITTYRLIIQDSK----------------------VFKRKKWKYLILDEAHLIKNWKSQRW 596 (1992)
Q Consensus 539 ~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~----------------------~f~r~~W~~LILDEAH~IKN~~Sq~~ 596 (1992)
.+.-.... .....||||+|||.+++.+.. +|..+.|++|||||||.+....|..+
T Consensus 456 rk~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a 532 (1394)
T KOG0298|consen 456 RKTFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAA 532 (1394)
T ss_pred hhhcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHH
Confidence 65432222 223689999999999987632 24456799999999999999999999
Q ss_pred HHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhh
Q 000160 597 QTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILR 676 (1992)
Q Consensus 597 qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLR 676 (1992)
++++.|.+.+||++||||+|+ +.+|+.||.||.-++|.....|.+....+.. ....-..++.++...+.|
T Consensus 533 ~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~---------~ra~~~~~~dl~~q~l~R 602 (1394)
T KOG0298|consen 533 EMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ---------LRAKCEPLLDLFKQLLWR 602 (1394)
T ss_pred HHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH---------HHhhhhhHHHHHHhhhhh
Confidence 999999999999999999999 9999999999999999999999877654331 113335789999999999
Q ss_pred hhhhhhhh--cCCCceeEEEEecCCHHHHHHHHHH----HHhH-HHHHHHh-------h-------cchhhHHHHHHHHH
Q 000160 677 RLKRDVEK--QLPMKQEHVIYCRLSKRQRNLYEDF----IASS-ETQATLA-------S-------ANFFGMISVIMQLR 735 (1992)
Q Consensus 677 RtK~DVek--qLP~K~E~VV~c~LS~~Qr~LYdd~----is~~-~t~~~L~-------s-------gn~~silniLmqLR 735 (1992)
+.|.+|+. ++||..+.+....+++.+-.+|... .... .....+. + .....+++.+.+||
T Consensus 603 ~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rLR 682 (1394)
T KOG0298|consen 603 TFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRLR 682 (1394)
T ss_pred hhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHHH
Confidence 99999987 6899888888888888877777532 2211 1112221 1 12345789999999
Q ss_pred HhhCCCcccCC
Q 000160 736 KVCNHPDLFEG 746 (1992)
Q Consensus 736 KvCNHP~Lfe~ 746 (1992)
++|+||..+..
T Consensus 683 q~Cchplv~~~ 693 (1394)
T KOG0298|consen 683 QACCHPLVGNS 693 (1394)
T ss_pred HhhcccccccC
Confidence 99999987654
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.6e-36 Score=385.10 Aligned_cols=342 Identities=21% Similarity=0.384 Sum_probs=255.4
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHC--C
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWC--P 528 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL-L~NWe~EfkKw~--P 528 (1992)
...|||||..++.|+... ....+|||...||+|||+++|++++.+ .+++|||||+++ +.||..+|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 478999999999988541 112589999999999999999988765 258999999875 889999999997 4
Q ss_pred CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc----------hhhhhccCccEEEEcCccccCChhhHHHHH
Q 000160 529 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD----------SKVFKRKKWKYLILDEAHLIKNWKSQRWQT 598 (1992)
Q Consensus 529 ~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD----------~~~f~r~~W~~LILDEAH~IKN~~Sq~~qa 598 (1992)
...|..|.|..+... .....|+||||+++..+ ...|....|++||+||||++.+ ....+.
T Consensus 326 ~~~I~~~tg~~k~~~--------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~i 395 (732)
T TIGR00603 326 DSQICRFTSDAKERF--------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRV 395 (732)
T ss_pred CceEEEEecCccccc--------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHH
Confidence 567888888754421 13467999999998643 1235556899999999999964 334446
Q ss_pred HHhcccceEEEEeccCCCCChHHHHHHHHHh-CCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhh
Q 000160 599 LLNFNSKRRILLTGTPLQNDLMELWSLMHFL-MPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRR 677 (1992)
Q Consensus 599 Ll~L~a~rRLLLTGTPLQNsL~ELwSLL~FL-~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRR 677 (1992)
+..+++.+||+|||||++++ +.+..+.|| .|.+|.-
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~----------------------------------------- 432 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA----------------------------------------- 432 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec-----------------------------------------
Confidence 66789999999999999876 445555554 3433211
Q ss_pred hhhhhh--hcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCccccccc
Q 000160 678 LKRDVE--KQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDM 755 (1992)
Q Consensus 678 tK~DVe--kqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~ 755 (1992)
.-.++. ..|.+..-+.|+|+|++.. |..++.... +.++.
T Consensus 433 ~~~eLi~~G~LA~~~~~ev~v~~t~~~---~~~yl~~~~------------------~~k~~------------------ 473 (732)
T TIGR00603 433 NWMELQKKGFIANVQCAEVWCPMTPEF---YREYLRENS------------------RKRML------------------ 473 (732)
T ss_pred CHHHHHhCCccccceEEEEEecCCHHH---HHHHHHhcc------------------hhhhH------------------
Confidence 111111 2355555577999999863 333221000 00000
Q ss_pred ccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccC
Q 000160 756 SGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLN 835 (1992)
Q Consensus 756 ~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~ 835 (1992)
T Consensus 474 -------------------------------------------------------------------------------- 473 (732)
T TIGR00603 474 -------------------------------------------------------------------------------- 473 (732)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccC
Q 000160 836 GTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLS 915 (1992)
Q Consensus 836 g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s 915 (1992)
T Consensus 474 -------------------------------------------------------------------------------- 473 (732)
T TIGR00603 474 -------------------------------------------------------------------------------- 473 (732)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCcccccccc
Q 000160 916 PVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDC 995 (1992)
Q Consensus 916 ~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dS 995 (1992)
+...+.
T Consensus 474 --------------------------------------------------------------------------l~~~np 479 (732)
T TIGR00603 474 --------------------------------------------------------------------------LYVMNP 479 (732)
T ss_pred --------------------------------------------------------------------------HhhhCh
Confidence 000012
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+.++..|++.....|+|+||||+++..++.+...| |. ..|+|.|+..+|.+++++|+.++.+.|+++| ++|+
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgd 553 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGD 553 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccc
Confidence 4777777888776678999999999998888777766 43 4589999999999999999876778886554 9999
Q ss_pred cccCCccCCEEEEecCCC-ChhhHHHHHHhhcccCCcCc-----EEEEEEEeCCCHHHHHHHH
Q 000160 1076 VGINLVGADTVIFYDSDW-NPAMDQQAQDRCHRIGQTRE-----VHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dW-NPa~d~QA~gRahRIGQTRd-----V~VYRLIse~TIEErIlkr 1132 (1992)
+||||+.|++||++++++ ++...+|+.||+.|.|..+. .++|.||+.+|.|+..-.+
T Consensus 554 eGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 554 TSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred cccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHH
Confidence 999999999999999986 99999999999999997654 7999999999999998654
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.9e-31 Score=349.97 Aligned_cols=460 Identities=19% Similarity=0.238 Sum_probs=286.8
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--C
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--A 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P--~ 529 (1992)
..+|+||...+..++. .|+|++..+|+|||++++.+++++.. ...+++|||||+ .++.||..+|++++. .
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4689999998887654 28999999999999999988887653 344799999999 788999999999864 3
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCChhhHHHHHHHhc---cc
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF---NS 604 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L---~a 604 (1992)
.++..++|...... ....| ...+|+|+|++.+..+.. .+....|++||+||||++.+..+..+.+-.-+ +.
T Consensus 87 ~~v~~~~g~~~~~~-r~~~~---~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEK-RAELW---EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHH-HHHHH---hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 58888988654332 11223 246799999999987642 23345799999999999987554433322222 34
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCCCC----hHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhh
Q 000160 605 KRRILLTGTPLQNDLMELWSLMHFLMPHIFQS----HQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKR 680 (1992)
Q Consensus 605 ~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s----~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~ 680 (1992)
.++++|||||.++ ...+..+++-|....+.. +..+..++..+- ...-. ..-......++..|..++.+|.+.
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~--v~~~~-v~l~~~~~~i~~~l~~~~~~~l~~ 238 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVK--IEWVR-VELPEELKEIRDLLNEALKDRLKK 238 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccce--eEEEE-eCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999876 566667777664332211 123333332111 00000 111234567889999999888876
Q ss_pred hhhhc-CCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCccccccccccc
Q 000160 681 DVEKQ-LPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGID 759 (1992)
Q Consensus 681 DVekq-LP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~ 759 (1992)
..... .++....+....+...++.++..+..... .......++..++.|++. ..+.+..
T Consensus 239 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~l~~~---~~~l~~~------------ 298 (773)
T PRK13766 239 LKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS-----EGYEAISILAEAMKLRHA---VELLETQ------------ 298 (773)
T ss_pred HHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch-----HHHHHHHHHHHHHHHHHH---HHHHHHh------------
Confidence 54332 22222222233333333333332221100 000011222222333221 1110000
Q ss_pred ccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchH
Q 000160 760 SQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSI 839 (1992)
Q Consensus 760 ~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~ 839 (1992)
+...
T Consensus 299 ----------------------------------------------------------------------------~~~~ 302 (773)
T PRK13766 299 ----------------------------------------------------------------------------GVEA 302 (773)
T ss_pred ----------------------------------------------------------------------------CHHH
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHH
Q 000160 840 FEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVER 919 (1992)
Q Consensus 840 ~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~er 919 (1992)
+......+. .. .....+ .... ..+... .+
T Consensus 303 ~~~y~~~l~----~~--------------~~~~~~--~~~~-----------------------------~~l~~~--~~ 331 (773)
T PRK13766 303 LRRYLERLR----EE--------------ARSSGG--SKAS-----------------------------KRLVED--PR 331 (773)
T ss_pred HHHHHHHHH----hh--------------ccccCC--cHHH-----------------------------HHHHhC--HH
Confidence 000000000 00 000000 0000 000000 00
Q ss_pred HHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHH
Q 000160 920 FQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQ 999 (1992)
Q Consensus 920 l~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq 999 (1992)
..+....+ ..+....+|++
T Consensus 332 ~~~~~~~~-------------------------------------------------------------~~~~~~~pK~~ 350 (773)
T PRK13766 332 FRKAVRKA-------------------------------------------------------------KELDIEHPKLE 350 (773)
T ss_pred HHHHHHHH-------------------------------------------------------------HhcccCChHHH
Confidence 00000000 00012358999
Q ss_pred HHHHHHHHHh--hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCC--------CCHHHHHHHHHHHhcCCCceEEEE
Q 000160 1000 ELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGS--------TQPEERQTLMQRFNTNPKIFLFIL 1069 (1992)
Q Consensus 1000 ~L~~LL~kLk--s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGs--------ts~eqRq~lIerFN~D~~ifVfLL 1069 (1992)
.|..+|+... ..+.||||||++..+++.|..+|...|+.+.+++|. ++..+|+.++++|+. +.+.| |+
T Consensus 351 ~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~~~v-Lv 428 (773)
T PRK13766 351 KLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GEFNV-LV 428 (773)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CCCCE-EE
Confidence 9999999876 578999999999999999999999999999999997 788899999999986 45666 67
Q ss_pred eccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000160 1070 STRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALD 1140 (1992)
Q Consensus 1070 STrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~ 1140 (1992)
+|.++++|+|++.+++||+||++|||....|+.||++|.|+ +.||.|++++|+||.+|.....|....
T Consensus 429 aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 429 STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 88999999999999999999999999999997777777665 789999999999999998776666544
No 24
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.93 E-value=1e-23 Score=269.06 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
+.+.+..++..+...|+++|||+..+..++.|...|+..|+.+..|+|.++.++|..+++.|+. +...|+|.|++..|+
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~e 407 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFST 407 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceecc
Confidence 4445555666666678899999999999999999999999999999999999999999999975 566777777799999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCc-EEEEEEEeCCC
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE-VHIYRLISEST 1124 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRd-V~VYRLIse~T 1124 (1992)
|+++...|+||+++|.-+.....|++||++|.|..|. +.||.|+-.-.
T Consensus 408 G~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 408 GISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred ccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 9999999999999999999999999999999998765 89999996443
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=1.3e-23 Score=263.77 Aligned_cols=364 Identities=23% Similarity=0.300 Sum_probs=267.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC
Q 000160 450 LLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP 528 (1992)
Q Consensus 450 lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P 528 (1992)
.....||+||..+++-++...+....||+.-.+|.|||+.++.+++.+.. ++|||||+ .++.||...+.+++.
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcC
Confidence 34578999999999966665555888999999999999999998887643 49999998 578999988888876
Q ss_pred CC-eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc--hhhhhccCccEEEEcCccccCChhhHHHHHHHhcccc
Q 000160 529 AF-KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 605 (1992)
Q Consensus 529 ~l-KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD--~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~ 605 (1992)
.- .+..|.|..+.-. . ..|.|+||+++.+. ...|....|++||+|||||+.....+.+.. .+...
T Consensus 106 ~~~~~g~~~~~~~~~~---------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~--~~~~~ 173 (442)
T COG1061 106 LNDEIGIYGGGEKELE---------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILE--LLSAA 173 (442)
T ss_pred CccccceecCceeccC---------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHH--hhhcc
Confidence 54 5666766654321 1 46999999999986 345555589999999999998755444333 33455
Q ss_pred e-EEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhh-h
Q 000160 606 R-RILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDV-E 683 (1992)
Q Consensus 606 r-RLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DV-e 683 (1992)
+ ||+|||||...+-..+.-+..++.| .+......+. .
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~-----------------------------------------~vy~~~~~~li~ 212 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGP-----------------------------------------IVYEVSLKELID 212 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcCC-----------------------------------------eEeecCHHHHHh
Confidence 5 9999999986553333333333322 2222222222 2
Q ss_pred -hcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccc
Q 000160 684 -KQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQL 762 (1992)
Q Consensus 684 -kqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l 762 (1992)
..|.|.....+++.++......|............ -+.. +.
T Consensus 213 ~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~---------------~~~~-----~~------------------ 254 (442)
T COG1061 213 EGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR---------------ARGT-----LR------------------ 254 (442)
T ss_pred CCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh---------------hhhh-----hh------------------
Confidence 35778888889999998888888765432110000 0000 00
Q ss_pred cccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHH
Q 000160 763 SSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEK 842 (1992)
Q Consensus 763 ~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~ 842 (1992)
T Consensus 255 -------------------------------------------------------------------------------- 254 (442)
T COG1061 255 -------------------------------------------------------------------------------- 254 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHH
Q 000160 843 IRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQR 922 (1992)
Q Consensus 843 l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~ 922 (1992)
.+...
T Consensus 255 ----~~~~~----------------------------------------------------------------------- 259 (442)
T COG1061 255 ----AENEA----------------------------------------------------------------------- 259 (442)
T ss_pred ----HHHHH-----------------------------------------------------------------------
Confidence 00000
Q ss_pred hhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHH
Q 000160 923 MIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELA 1002 (1992)
Q Consensus 923 l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~ 1002 (1992)
.+.......|+..+.
T Consensus 260 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 274 (442)
T COG1061 260 -----------------------------------------------------------------RRIAIASERKIAAVR 274 (442)
T ss_pred -----------------------------------------------------------------HHHhhccHHHHHHHH
Confidence 000001235777777
Q ss_pred HHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCcc
Q 000160 1003 ILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG 1082 (1992)
Q Consensus 1003 ~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~ 1082 (1992)
.++.... .+.+++||+......+.|...|...|+ ...++|.|+..+|..++++|.... +.+ |++++.+++|+++..
T Consensus 275 ~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~-lv~~~vl~EGvDiP~ 350 (442)
T COG1061 275 GLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKV-LVTVKVLDEGVDIPD 350 (442)
T ss_pred HHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCE-EEEeeeccceecCCC
Confidence 7887766 789999999999999999999998888 899999999999999999998754 544 788899999999999
Q ss_pred CCEEEEecCCCChhhHHHHHHhhcc-cCCcCc--EEEEEEEeCCCHHHHHHHHHH
Q 000160 1083 ADTVIFYDSDWNPAMDQQAQDRCHR-IGQTRE--VHIYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1083 AdtVIfyD~dWNPa~d~QA~gRahR-IGQTRd--V~VYRLIse~TIEErIlkra~ 1134 (1992)
|+++|+..|.=++....|++||+.| ...... +..|-++..++.+..+.....
T Consensus 351 ~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 351 ADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred CcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 9999999999999999999999999 444444 888999999999999876643
No 26
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.3e-22 Score=241.15 Aligned_cols=150 Identities=21% Similarity=0.324 Sum_probs=131.9
Q ss_pred cccchHHHHHHHHHHHh--hCCCeEEEEeCchHHHHHHHHHHHHcCCcEE-EecC--------CCCHHHHHHHHHHHhcC
Q 000160 993 FDCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLYGYTYM-RLDG--------STQPEERQTLMQRFNTN 1061 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLk--s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~-RLDG--------sts~eqRq~lIerFN~D 1061 (1992)
++-+||..|..+|++.. ..+.||||||+|..+.+.|..+|...|+... |+-| +|+..+..+++++|.+
T Consensus 345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~- 423 (542)
T COG1111 345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK- 423 (542)
T ss_pred CCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-
Confidence 35689999999998886 5678999999999999999999999998875 7766 5888999999999986
Q ss_pred CCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000160 1062 PKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDD 1141 (1992)
Q Consensus 1062 ~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~ 1141 (1992)
+.+.| |++|..|-+||++...|-||||||.-.|-.-.||+||.+| .+.=.||-|+++||-+|--+..+.+|-.-..
T Consensus 424 Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 424 GEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred CCceE-EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 67777 6889999999999999999999999999999999998877 4788899999999999999988888877666
Q ss_pred HHHhcC
Q 000160 1142 LVIQSG 1147 (1992)
Q Consensus 1142 ~vIq~g 1147 (1992)
..+.+.
T Consensus 500 e~i~~~ 505 (542)
T COG1111 500 ESIRGL 505 (542)
T ss_pred HHHHHH
Confidence 666543
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.1e-21 Score=232.47 Aligned_cols=355 Identities=23% Similarity=0.434 Sum_probs=249.7
Q ss_pred ccccccccccCCCCCC--CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000160 437 TFSTTQVRTKFPFLLK--FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 514 (1992)
Q Consensus 437 t~~tt~vkt~vP~lLk--~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS 514 (1992)
.+-...+...++--|+ ..|||||...|..|.-.- +.+.||+.-.+|.|||+..|..++.. .+.+||+|-++
T Consensus 283 DFRND~~npdl~idLKPst~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~ 355 (776)
T KOG1123|consen 283 DFRNDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSA 355 (776)
T ss_pred ccccCCCCCCCCcCcCcccccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeee------cccEEEEecCc
Confidence 3333444444555554 689999999998876422 23478999999999999988765543 35789999987
Q ss_pred c-HHHHHHHHHHHCC--CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc----------hhhhhccCccEEE
Q 000160 515 V-MLNWETEFLKWCP--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD----------SKVFKRKKWKYLI 581 (1992)
Q Consensus 515 L-L~NWe~EfkKw~P--~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD----------~~~f~r~~W~~LI 581 (1992)
| +.||...|+.|+. .-.|..|....+++. +....||||||.++..- ...++...|.+||
T Consensus 356 VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~--------~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGlll 427 (776)
T KOG1123|consen 356 VSVEQWKQQFKQWSTIQDDQICRFTSDAKERF--------PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLL 427 (776)
T ss_pred cCHHHHHHHHHhhcccCccceEEeeccccccC--------CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEE
Confidence 6 8999999999984 345677776666653 34567999999998642 4557888999999
Q ss_pred EcCccccCChhhHHHHHHHhc-ccceEEEEeccCCCCChHHHHHHHHHh-CCCCCCChHHHHHHhcCCCCCccccccccc
Q 000160 582 LDEAHLIKNWKSQRWQTLLNF-NSKRRILLTGTPLQNDLMELWSLMHFL-MPHIFQSHQEFKDWFCNPISGMVEGQEKVN 659 (1992)
Q Consensus 582 LDEAH~IKN~~Sq~~qaLl~L-~a~rRLLLTGTPLQNsL~ELwSLL~FL-~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~ 659 (1992)
|||.|.|- .+.++.++.+ +++.+|+||+|-+... |-..=|+|| .|.++.- +|..
T Consensus 428 lDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA-----nWmd-------------- 483 (776)
T KOG1123|consen 428 LDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA-----NWMD-------------- 483 (776)
T ss_pred eehhccch---HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhhc-----cHHH--------------
Confidence 99999984 4555555554 8889999999988643 223335666 3444321 1110
Q ss_pred HHHHHHHHHhhhHhhhhhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhC
Q 000160 660 KEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCN 739 (1992)
Q Consensus 660 ~e~v~rLhkvLrpFmLRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCN 739 (1992)
|. -..+ +..-.-.-|||+||+. +|..++.....+. .
T Consensus 484 ------L~--~kGh------------IA~VqCaEVWCpMt~e---Fy~eYL~~~t~kr------------------~--- 519 (776)
T KOG1123|consen 484 ------LQ--KKGH------------IAKVQCAEVWCPMTPE---FYREYLRENTRKR------------------M--- 519 (776)
T ss_pred ------HH--hCCc------------eeEEeeeeeecCCCHH---HHHHHHhhhhhhh------------------h---
Confidence 00 0111 1222234579999986 7776653210000 0
Q ss_pred CCcccCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcc
Q 000160 740 HPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLN 819 (1992)
Q Consensus 740 HP~Lfe~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~ 819 (1992)
|
T Consensus 520 ---l---------------------------------------------------------------------------- 520 (776)
T KOG1123|consen 520 ---L---------------------------------------------------------------------------- 520 (776)
T ss_pred ---e----------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhh
Q 000160 820 NLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTV 899 (1992)
Q Consensus 820 ~~~~~~p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~ 899 (1992)
T Consensus 521 -------------------------------------------------------------------------------- 520 (776)
T KOG1123|consen 521 -------------------------------------------------------------------------------- 520 (776)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhh
Q 000160 900 RRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIV 979 (1992)
Q Consensus 900 ~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~ 979 (1992)
T Consensus 521 -------------------------------------------------------------------------------- 520 (776)
T KOG1123|consen 521 -------------------------------------------------------------------------------- 520 (776)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccccCCccccccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHh
Q 000160 980 RRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFN 1059 (1992)
Q Consensus 980 ~~~~~fPd~rLiq~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN 1059 (1992)
|..+.-.|+++..-|++.....|.|+|||+...-.|.-.. -..|-. .|+|.|+..+|-++++.|+
T Consensus 521 ----------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YA---ikl~Kp--fIYG~Tsq~ERm~ILqnFq 585 (776)
T KOG1123|consen 521 ----------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYA---IKLGKP--FIYGPTSQNERMKILQNFQ 585 (776)
T ss_pred ----------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH---HHcCCc--eEECCCchhHHHHHHHhcc
Confidence 0011234667777778777788999999998765544333 333433 4789999999999999999
Q ss_pred cCCCceEEEEeccccccccCCccCCEEEEecCCCCh-hhHHHHHHhhcccCCcC----cEEEEEEEeCCCHHHHH
Q 000160 1060 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNP-AMDQQAQDRCHRIGQTR----EVHIYRLISESTIEENI 1129 (1992)
Q Consensus 1060 ~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNP-a~d~QA~gRahRIGQTR----dV~VYRLIse~TIEErI 1129 (1992)
.++.|.-+.+| ++|...|+|..|+.+|-+.+..-. ..++|+.||+-|--... .++.|-||+.+|.|-.-
T Consensus 586 ~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 586 TNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred cCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 99999987777 899999999999999999987654 67999999999965332 38999999999998654
No 28
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.83 E-value=2.1e-18 Score=218.54 Aligned_cols=121 Identities=18% Similarity=0.351 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..+|... .+.++|||++.....+.|...|...|+....++|.++..+|+.+++.|.+ +.+.| |++|.+++.
T Consensus 229 k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~v-LVaTdv~~r 304 (460)
T PRK11776 229 RLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSV-LVATDVAAR 304 (460)
T ss_pred HHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEEeccccc
Confidence 566666666543 35689999999999999999999999999999999999999999999985 66776 677899999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
|||+.++++||.||.+.++....|++||+.|.|+. -..|.|++.+
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~--G~ai~l~~~~ 349 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK--GLALSLVAPE 349 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc--ceEEEEEchh
Confidence 99999999999999999999999999999999976 4456677664
No 29
>PTZ00110 helicase; Provisional
Probab=99.82 E-value=2.2e-18 Score=221.99 Aligned_cols=124 Identities=24% Similarity=0.380 Sum_probs=110.4
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|...|..+|..+...+.++|||++.....+.|...|...|+..+.++|.++..+|..+++.|.. +.+.| |++|.+++
T Consensus 361 ~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~I-LVaTdv~~ 438 (545)
T PTZ00110 361 EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPI-MIATDVAS 438 (545)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcE-EEEcchhh
Confidence 36666777777776678899999999999999999999999999999999999999999999986 56666 78899999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
.|||+..+++||+||+++++....|++||++|.|.+-. +|.|++.+
T Consensus 439 rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 439 RGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999999999999999999999998654 45667765
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=2.2e-18 Score=218.96 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=97.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEec
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD 1090 (1992)
.+.++|||+...+..+.|...|...|+....++|+++.++|..+++.|.. +.+.| |++|.+.|.|||+...++||+||
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~v-LVaT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQV-VVATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcE-EEEechhhccCCcccceEEEEeC
Confidence 46678999999999999999999999999999999999999999999985 67777 67889999999999999999999
Q ss_pred CCCChhhHHHHHHhhcccCCcCcEEEE
Q 000160 1091 SDWNPAMDQQAQDRCHRIGQTREVHIY 1117 (1992)
Q Consensus 1091 ~dWNPa~d~QA~gRahRIGQTRdV~VY 1117 (1992)
++.++....|++||++|.|+.....+|
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999988776554
No 31
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.80 E-value=6.4e-18 Score=216.86 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH-HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 998 LQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS-LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 998 Lq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~-~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
...|..+|........++|||+......+.|...|. ..|+.+..++|.++..+|..+++.|.. +.+.| |++|.+++.
T Consensus 353 ~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~I-LVaTdvl~r 430 (518)
T PLN00206 353 KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPV-IVATGVLGR 430 (518)
T ss_pred HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCE-EEEecHhhc
Confidence 344455555444344689999999999999999997 479999999999999999999999986 67777 688899999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
|||+..+++||+||++.++....|++||++|.|.. -.+|.|++.+
T Consensus 431 GiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 431 GVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred cCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC--eEEEEEEchh
Confidence 99999999999999999999999999999999965 4455566653
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.80 E-value=1.2e-17 Score=210.07 Aligned_cols=116 Identities=18% Similarity=0.301 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..+++. ....++|||+.....++.|...|...|+....++|.++..+|..++++|.. +.+.| |++|..++.
T Consensus 232 k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~v-LVaTd~~~~ 307 (434)
T PRK11192 232 KTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNV-LVATDVAAR 307 (434)
T ss_pred HHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcE-EEEcccccc
Confidence 45555555542 245799999999999999999999999999999999999999999999985 67776 678899999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEE
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1116 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1116 (1992)
|||+...++||+||+++++....|++||++|.|..-.+.+
T Consensus 308 GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 308 GIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 9999999999999999999999999999999998655444
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.80 E-value=1.5e-17 Score=211.65 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|...|..+|.. ....|+|||++.....+.|...|...|+.+..++|.++.++|..+++.|.. +++.| |++|.+++.
T Consensus 322 k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~v-LvaT~~l~~ 397 (475)
T PRK01297 322 KYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRV-LVATDVAGR 397 (475)
T ss_pred HHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcE-EEEcccccc
Confidence 44455555543 234699999999999999999999999999999999999999999999985 66776 678999999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
|||+.++++||+||.++++....|+.||++|.|+.- .++.|++.+
T Consensus 398 GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g--~~i~~~~~~ 442 (475)
T PRK01297 398 GIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG--VSISFAGED 442 (475)
T ss_pred CCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc--eEEEEecHH
Confidence 999999999999999999999999999999999754 444556554
No 34
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.79 E-value=2.1e-17 Score=213.95 Aligned_cols=120 Identities=22% Similarity=0.398 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..+|.. ..+.++|||+......+.|...|...|+....|+|.++..+|..+++.|.+ +.+.| |++|.+.+.
T Consensus 244 k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~V-LVaTdv~ar 319 (572)
T PRK04537 244 KQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEI-LVATDVAAR 319 (572)
T ss_pred HHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEehhhhc
Confidence 45555555543 357899999999999999999999999999999999999999999999985 66766 688899999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeC
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1122 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1122 (1992)
|||+...++||+||.+|++....|++||+.|.|..-.+ +.|++.
T Consensus 320 GIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 320 GLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred CCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 99999999999999999999999999999999986543 445654
No 35
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.79 E-value=1.4e-17 Score=209.04 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=105.4
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+..|..+|... ...++|||++....++.|...|...|+....++|.++..+|..+++.|+. +++.| |++|..++
T Consensus 241 ~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~v-LVaTdv~~ 316 (423)
T PRK04837 241 EKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDI-LVATDVAA 316 (423)
T ss_pred HHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcE-EEEechhh
Confidence 3556666666542 45799999999999999999999999999999999999999999999986 67776 68889999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeC
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1122 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1122 (1992)
.|||+...++||+||+++++....|++||++|.|+.-. ++-|+++
T Consensus 317 rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 317 RGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred cCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 99999999999999999999999999999999997644 4556665
No 36
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.78 E-value=2.6e-17 Score=208.51 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=100.3
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecC
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1091 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~ 1091 (1992)
..++|||+......+.|...|...|+....++|.++..+|..+++.|.. +.+.| |++|.+.+.|||+...++||+||+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~i-LVaTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRV-LVATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcE-EEEccHHhcCCCcccCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999986 67776 678899999999999999999999
Q ss_pred CCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1092 DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1092 dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
+.++....|++||++|.|++-.+. -|++.+ |..+++.
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~ai--~l~~~~--d~~~~~~ 359 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGEAL--SLVCVD--EHKLLRD 359 (456)
T ss_pred CCCHHHhhhhccccccCCCCeeEE--EEecHH--HHHHHHH
Confidence 999999999999999999876543 355543 4444443
No 37
>PTZ00424 helicase 45; Provisional
Probab=99.78 E-value=2.9e-17 Score=204.20 Aligned_cols=109 Identities=18% Similarity=0.288 Sum_probs=98.4
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecC
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1091 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~ 1091 (1992)
..++|||+......+.|...|...|+....++|.++..+|+.+++.|.+ +.+.| |++|...+.|||+..+++||+||+
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~v-LvaT~~l~~GiDip~v~~VI~~~~ 344 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRV-LITTDLLARGIDVQQVSLVINYDL 344 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCE-EEEcccccCCcCcccCCEEEEECC
Confidence 4589999999999999999999999999999999999999999999985 67777 688899999999999999999999
Q ss_pred CCChhhHHHHHHhhcccCCcCcEEEEEEEeCCC
Q 000160 1092 DWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1124 (1992)
Q Consensus 1092 dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1124 (1992)
+.++....|++||++|.|.. -.+|.|++.+-
T Consensus 345 p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 345 PASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred CCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 99999999999999999954 45666776653
No 38
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.78 E-value=1.5e-16 Score=202.57 Aligned_cols=145 Identities=21% Similarity=0.280 Sum_probs=114.2
Q ss_pred cccchHHHHHHHHHHHhhC--CCeEEEEeCchHHHHHHHHHHH-Hc--CCcEEEecC--------CCCHHHHHHHHHHHh
Q 000160 993 FDCGKLQELAILLRKLKSD--GHRALIFTQMTKMLDILEEFIS-LY--GYTYMRLDG--------STQPEERQTLMQRFN 1059 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLks~--G~KVLIFSQ~t~mLDILe~~L~-~~--Gi~y~RLDG--------sts~eqRq~lIerFN 1059 (1992)
+..+|+..|...|...... ..|+|||+.+....+.|-.+|. .+ |++-..+-| +++..+.++.|+.|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh
Confidence 3578999999999887654 5799999999999999999997 43 445444544 577788999999998
Q ss_pred cCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHH-HHHHHHH
Q 000160 1060 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK-KANQKRA 1138 (1992)
Q Consensus 1060 ~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlk-ra~qKr~ 1138 (1992)
+ +.+.| |++|..|-+||++..||-||.||..-||....||+|| +| .|.-.++-|.+ .+++.-++ .+..|+.
T Consensus 472 ~-G~~Nv-LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t--~~~~~~~E~~~~~~e~ 543 (746)
T KOG0354|consen 472 D-GEINV-LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT--GSEVIEFERNNLAKEK 543 (746)
T ss_pred C-CCccE-EEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc--chhHHHHHHHHHhHHH
Confidence 6 88888 6788999999999999999999999999999999999 54 56655555555 44554444 3455666
Q ss_pred HHHHHHh
Q 000160 1139 LDDLVIQ 1145 (1992)
Q Consensus 1139 L~~~vIq 1145 (1992)
|....|.
T Consensus 544 lm~~~i~ 550 (746)
T KOG0354|consen 544 LMNQTIS 550 (746)
T ss_pred HHHHHHH
Confidence 6666664
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.77 E-value=8.3e-17 Score=209.72 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..+|... ...++|||+......+.|...|...|+....++|.++..+|..++++|.. +++.| |++|.+.+.
T Consensus 232 k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~I-LVATdv~ar 307 (629)
T PRK11634 232 KNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDI-LIATDVAAR 307 (629)
T ss_pred HHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCE-EEEcchHhc
Confidence 555555565432 34689999999999999999999999999999999999999999999986 66665 789999999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEE
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVH 1115 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~ 1115 (1992)
|||+...++||+||++.++....|++||+.|.|.+-.+.
T Consensus 308 GIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEE
Confidence 999999999999999999999999999999999765433
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.77 E-value=2.6e-17 Score=214.68 Aligned_cols=102 Identities=22% Similarity=0.261 Sum_probs=94.3
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecC
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1091 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~ 1091 (1992)
+.++|||+......+.|..+|...|+.+..++|+++.++|..+++.|.. +.+.| |++|.+.|.|||+...+.||+||+
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~v-lVaT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVKV-MVATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcE-EEEechhhccCcCCCCCEEEEcCC
Confidence 6789999999999999999999999999999999999999999999986 45655 788899999999999999999999
Q ss_pred CCChhhHHHHHHhhcccCCcCcEE
Q 000160 1092 DWNPAMDQQAQDRCHRIGQTREVH 1115 (1992)
Q Consensus 1092 dWNPa~d~QA~gRahRIGQTRdV~ 1115 (1992)
++|+....|++||++|.|+...+.
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999765543
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.76 E-value=6.1e-17 Score=211.27 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=94.5
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEec
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD 1090 (1992)
.+.++|||+......+.|...|...|+....++|+++.++|..+++.|.. +++.| |++|.+.|.|||+...+.||+||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~V-LVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQI-VVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCE-EEEechhhccCCCCCcCEEEEeC
Confidence 46789999999999999999999999999999999999999999999986 56766 68889999999999999999999
Q ss_pred CCCChhhHHHHHHhhcccCCcCcE
Q 000160 1091 SDWNPAMDQQAQDRCHRIGQTREV 1114 (1992)
Q Consensus 1091 ~dWNPa~d~QA~gRahRIGQTRdV 1114 (1992)
++.++....|++||++|.|....+
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceE
Confidence 999999999999999999976553
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.75 E-value=2.1e-16 Score=207.03 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=111.5
Q ss_pred CCCCChHHHHHHHHHHHHHHcc--CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHC
Q 000160 451 LKFPLREYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWC 527 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~--~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS-LL~NWe~EfkKw~ 527 (1992)
|.+.|.++|..++..++.-... ..+.+|.-++|.|||+.++..+..... . ...+||++|+. |..||...|++|+
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-~--g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-A--GYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-c--CCcEEEECCHHHHHHHHHHHHHHHh
Confidence 3457999999999998875432 357899999999999987644443322 2 34789999995 6688999999999
Q ss_pred C--CCeEEEEeCchhHHHH-hhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcc-
Q 000160 528 P--AFKILTYFGSAKERKF-KRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFN- 603 (1992)
Q Consensus 528 P--~lKVL~Y~Gs~keRk~-kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~- 603 (1992)
+ ++++..++|+...... ....+...+..+|+|+|+..+... ..| .+..+||+||+|++.- .++...+....
T Consensus 309 ~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-~~~--~~l~lvVIDEaH~fg~--~qr~~l~~~~~~ 383 (630)
T TIGR00643 309 APLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-VEF--KRLALVIIDEQHRFGV--EQRKKLREKGQG 383 (630)
T ss_pred cccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-ccc--cccceEEEechhhccH--HHHHHHHHhccc
Confidence 7 5899999987543221 112233456789999999887543 223 3568999999998632 22222222222
Q ss_pred --cceEEEEeccCCCC
Q 000160 604 --SKRRILLTGTPLQN 617 (1992)
Q Consensus 604 --a~rRLLLTGTPLQN 617 (1992)
..+.+++||||+..
T Consensus 384 ~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 384 GFTPHVLVMSATPIPR 399 (630)
T ss_pred CCCCCEEEEeCCCCcH
Confidence 56789999999764
No 43
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.74 E-value=3.3e-16 Score=213.02 Aligned_cols=106 Identities=15% Similarity=0.299 Sum_probs=87.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHc------CC---cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCcc
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLY------GY---TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG 1082 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~------Gi---~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~ 1082 (1992)
+.|+|||+......+.+...|+.. ++ .+..++|+++ +++.++++|.+ +....+++|+...++|++...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~-~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN-ERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC-CCCCeEEEEecccccCCCccc
Confidence 469999999999988877776542 22 3467999986 78899999976 444456789999999999999
Q ss_pred CCEEEEecCCCChhhHHHHHHhhcccCC---cCcEEEEEEE
Q 000160 1083 ADTVIFYDSDWNPAMDQQAQDRCHRIGQ---TREVHIYRLI 1120 (1992)
Q Consensus 1083 AdtVIfyD~dWNPa~d~QA~gRahRIGQ---TRdV~VYRLI 1120 (1992)
.++|||++|.-++....|++||+-|+.- +....||-++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 4556777654
No 44
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.72 E-value=1.1e-15 Score=201.78 Aligned_cols=156 Identities=21% Similarity=0.263 Sum_probs=110.2
Q ss_pred CCCCChHHHHHHHHHHHHHHcc--CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC
Q 000160 451 LKFPLREYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC 527 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~--~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~ 527 (1992)
+.+.|+++|..++.-+..-... ..+.+|.-++|.|||+.++..+..... .| ..+||++|+ .|..|+...|++|+
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-~g--~q~lilaPT~~LA~Q~~~~l~~l~ 334 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-AG--YQAALMAPTEILAEQHYENLKKLL 334 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-cC--CeEEEEeccHHHHHHHHHHHHHHH
Confidence 4457999999999988764432 357899999999999988755544332 22 368999999 56788999999998
Q ss_pred CC--CeEEEEeCchhH--HHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-
Q 000160 528 PA--FKILTYFGSAKE--RKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF- 602 (1992)
Q Consensus 528 P~--lKVL~Y~Gs~ke--Rk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L- 602 (1992)
+. +++..++|.... ++..... ...+..+|+|+|+.++... -.| .+..+||+||+|++. ......+...
T Consensus 335 ~~~~i~v~ll~G~~~~~~r~~~~~~-l~~g~~~IvVgT~~ll~~~-v~~--~~l~lvVIDE~Hrfg---~~qr~~l~~~~ 407 (681)
T PRK10917 335 EPLGIRVALLTGSLKGKERREILEA-IASGEADIVIGTHALIQDD-VEF--HNLGLVIIDEQHRFG---VEQRLALREKG 407 (681)
T ss_pred hhcCcEEEEEcCCCCHHHHHHHHHH-HhCCCCCEEEchHHHhccc-chh--cccceEEEechhhhh---HHHHHHHHhcC
Confidence 75 788899987643 2222111 2335689999999877432 223 356889999999873 3333344443
Q ss_pred ccceEEEEeccCCC
Q 000160 603 NSKRRILLTGTPLQ 616 (1992)
Q Consensus 603 ~a~rRLLLTGTPLQ 616 (1992)
...+.+++||||+.
T Consensus 408 ~~~~iL~~SATp~p 421 (681)
T PRK10917 408 ENPHVLVMTATPIP 421 (681)
T ss_pred CCCCEEEEeCCCCH
Confidence 34678999999974
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.71 E-value=1.1e-15 Score=204.87 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=93.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHc--CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLY--GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~--Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
.|.+|+||++....++.+...|+.. ++++..++|.++..+|..+|.+|.. +++.| |++|...+.|||+..+++||+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~I-LVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQV-LVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCE-EEECChhhcccccccCCEEEE
Confidence 4679999999999999999999874 8899999999999999999999986 66766 688899999999999999999
Q ss_pred ecCC-CChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1089 YDSD-WNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1089 yD~d-WNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
++.+ +..+...|+.||++|-|+. -++|-|+..+
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECCc
Confidence 9986 4556778999999998864 4556666543
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.70 E-value=1.9e-15 Score=199.81 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=96.2
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecC
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1091 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~ 1091 (1992)
+.+.|||+......+.|..+|...|+....++|+++.++|..++++|.. +++.| |++|.+.|.|||+...+.||+||.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~V-LVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINI-ICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcE-EEEechhhcCCCccCCcEEEEcCC
Confidence 4578999999999999999999999999999999999999999999986 56776 678899999999999999999999
Q ss_pred CCChhhHHHHHHhhcccCCcCcEEEEE
Q 000160 1092 DWNPAMDQQAQDRCHRIGQTREVHIYR 1118 (1992)
Q Consensus 1092 dWNPa~d~QA~gRahRIGQTRdV~VYR 1118 (1992)
+-++....|++||++|.|+.-.+.+|.
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 999999999999999999877655543
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.69 E-value=2.1e-15 Score=205.89 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=91.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHc--CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEe
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLY--GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFY 1089 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~--Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfy 1089 (1992)
+.+|+||++....++.+...|... ++++..++|.++..+|.++|.+|.+ +++.| |++|...+.|||+..+++||++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~V-LVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCE-EEECchhhcccccccCCEEEEe
Confidence 568999999999999999999876 8899999999999999999999986 67777 6788899999999999999998
Q ss_pred cCC-CChhhHHHHHHhhcccCCcCcEEEEEEEe
Q 000160 1090 DSD-WNPAMDQQAQDRCHRIGQTREVHIYRLIS 1121 (1992)
Q Consensus 1090 D~d-WNPa~d~QA~gRahRIGQTRdV~VYRLIs 1121 (1992)
+++ |.-....|+.||++|.|++- ++|-+..
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~ 917 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQA--YAWLLTP 917 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCce--EEEEEeC
Confidence 875 67778999999999998764 4443443
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.69 E-value=6.5e-15 Score=198.95 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=94.8
Q ss_pred HHHHhhCCCeEEEEeCchHHHHHHHHHHHH------cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccccc
Q 000160 1005 LRKLKSDGHRALIFTQMTKMLDILEEFISL------YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGI 1078 (1992)
Q Consensus 1005 L~kLks~G~KVLIFSQ~t~mLDILe~~L~~------~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GL 1078 (1992)
|..+...+.++|||++.....+.+...|.. .+..+..++|+++.++|..+.++|.+ +.+.| |++|.+.+.||
T Consensus 277 L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~v-LVaTs~Le~GI 354 (876)
T PRK13767 277 LHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKV-VVSSTSLELGI 354 (876)
T ss_pred HHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeE-EEECChHHhcC
Confidence 333334577999999999999999988875 35678899999999999999999986 66766 67889999999
Q ss_pred CCccCCEEEEecCCCChhhHHHHHHhhccc-CCcCcEEEEE
Q 000160 1079 NLVGADTVIFYDSDWNPAMDQQAQDRCHRI-GQTREVHIYR 1118 (1992)
Q Consensus 1079 NLT~AdtVIfyD~dWNPa~d~QA~gRahRI-GQTRdV~VYR 1118 (1992)
|+...|.||.|+++.++....|++||++|- |+...-.|+-
T Consensus 355 Dip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 355 DIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999999999999999975 5555555554
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.68 E-value=1.4e-14 Score=192.39 Aligned_cols=117 Identities=16% Similarity=0.262 Sum_probs=100.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHc--------CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCcc
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLY--------GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG 1082 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~--------Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~ 1082 (1992)
.+.++|||++..++.+.|..+|... +.+...++|++..++|..++++|.+ +++.+ |++|.+.+.|||+.+
T Consensus 270 ~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~v-LVaTd~lerGIDI~~ 347 (742)
T TIGR03817 270 EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLG-VATTNALELGVDISG 347 (742)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceE-EEECchHhccCCccc
Confidence 5789999999999999999988653 5677889999999999999999985 77776 789999999999999
Q ss_pred CCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHH
Q 000160 1083 ADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK 1131 (1992)
Q Consensus 1083 AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlk 1131 (1992)
.|+||+||.|-+.....|++||++|.|+.-- ++-++..+..|..++.
T Consensus 348 vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 348 LDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred ccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 9999999999999999999999999997643 4445666667766544
No 50
>PRK02362 ski2-like helicase; Provisional
Probab=99.63 E-value=4.4e-14 Score=188.73 Aligned_cols=150 Identities=17% Similarity=0.135 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC-CCe
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP-AFK 531 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P-~lK 531 (1992)
.|+|+|..++.-+ +..+.|.|++-.+|.|||+.+...+..... ..+.+|||||+ +++.|+..+|+++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 5899999999742 345789999999999999988544333222 23579999998 688999999998754 788
Q ss_pred EEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhh--hhccCccEEEEcCccccCChh-hHHHHHH-Hhc----c
Q 000160 532 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNWK-SQRWQTL-LNF----N 603 (1992)
Q Consensus 532 VL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~--f~r~~W~~LILDEAH~IKN~~-Sq~~qaL-l~L----~ 603 (1992)
+..++|...... .|. ...+|+|+|++.+..-... ..-...++||+||+|.|.+.. ...+..+ ..+ .
T Consensus 97 v~~~tGd~~~~~----~~l--~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 97 VGISTGDYDSRD----EWL--GDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEEEeCCcCccc----ccc--CCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 999988754322 222 3568999999876432111 001245999999999997532 2222222 222 3
Q ss_pred cceEEEEeccCC
Q 000160 604 SKRRILLTGTPL 615 (1992)
Q Consensus 604 a~rRLLLTGTPL 615 (1992)
..+.++||+|+-
T Consensus 171 ~~qii~lSATl~ 182 (737)
T PRK02362 171 DLQVVALSATIG 182 (737)
T ss_pred CCcEEEEcccCC
Confidence 347899999963
No 51
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.7e-14 Score=179.45 Aligned_cols=120 Identities=22% Similarity=0.313 Sum_probs=106.4
Q ss_pred cchHHHHHHHHHHHh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 995 CGKLQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 995 SgKLq~L~~LL~kLk-s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
..|.+.|..+|.... ..+.|||||++..++.+-|...|...|+..+-|+|..+..+|...++.|.. ++.. +|+.|..
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre-G~~~-vLVATdV 400 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE-GKSP-VLVATDV 400 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc-CCcc-eEEEccc
Confidence 358888889998887 335699999999999999999999999999999999999999999999976 4444 4789999
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEE
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1116 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1116 (1992)
++.||++.+.++||.||+|-|.-...+|+||..|-|++-..+.
T Consensus 401 AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 401 AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 9999999999999999999999999999999999777655443
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=99.62 E-value=7.5e-14 Score=185.05 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=100.8
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC-CC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP-AF 530 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P-~l 530 (1992)
..|+++|..++..+ ..+.|.|++-.+|.|||+++...+...... .+..++|+|+ ++..++..+|+++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 45899999999875 347789999999999999876555443332 2578999998 688889999988753 67
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCChh-hHHHHHHH----hcc
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWK-SQRWQTLL----NFN 603 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN~~-Sq~~qaLl----~L~ 603 (1992)
++..+.|....... + ....+|+|+|++.+..-.. ...-.++++||+||||.+.+.. ......++ .++
T Consensus 94 ~v~~~~G~~~~~~~----~--~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPD----F--IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred eEEEEeCCCCCChh----h--hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 78777776432211 1 1356899999976532211 1111346899999999996422 22233322 222
Q ss_pred -cceEEEEeccC
Q 000160 604 -SKRRILLTGTP 614 (1992)
Q Consensus 604 -a~rRLLLTGTP 614 (1992)
..+.++||||+
T Consensus 168 ~~~riI~lSATl 179 (674)
T PRK01172 168 PDARILALSATV 179 (674)
T ss_pred cCCcEEEEeCcc
Confidence 34678999996
No 53
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.61 E-value=2.9e-15 Score=155.86 Aligned_cols=120 Identities=31% Similarity=0.466 Sum_probs=111.5
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+..+..++.+....+.++|||+.....+..+...|...++.+..++|+++...|..+++.|+... ..+|++|.++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChhh
Confidence 6999999999988777899999999999999999999989999999999999999999999998744 45577899999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEE
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIY 1117 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VY 1117 (1992)
+|+|++.|++||+++++||+....|++||++|.||+..|+||
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998888775
No 54
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.60 E-value=6.7e-15 Score=161.86 Aligned_cols=154 Identities=26% Similarity=0.398 Sum_probs=112.6
Q ss_pred CCChHHHHHHHHHHHHHHccC---ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC
Q 000160 453 FPLREYQHIGLDWLVTMYEKR---LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP 528 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~---lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P 528 (1992)
.+||+||..++.-++..+... .+++|...+|.|||+++++++..+.. ++|||||+ +++.||..+|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 579999999999988877654 88999999999999999998888765 89999999 789999999988887
Q ss_pred CCeEEEEeCchh-----------HHHHhhhccCCCCCceEEEEeehhhhhchhh-------------hhccCccEEEEcC
Q 000160 529 AFKILTYFGSAK-----------ERKFKRQGWLKPNSFHVCITTYRLIIQDSKV-------------FKRKKWKYLILDE 584 (1992)
Q Consensus 529 ~lKVL~Y~Gs~k-----------eRk~kr~gw~k~~~fdVVITSYe~l~qD~~~-------------f~r~~W~~LILDE 584 (1992)
............ ........ ......++++++|+.+...... +....+++||+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSE-SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHH-HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhhcccccccccccccccccccccccccc-cccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 654443221100 00000000 1234677999999999876432 3345789999999
Q ss_pred ccccCChhhHHHHHHHhcccceEEEEeccCC
Q 000160 585 AHLIKNWKSQRWQTLLNFNSKRRILLTGTPL 615 (1992)
Q Consensus 585 AH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPL 615 (1992)
||++.+... |+.+..+...++|+|||||.
T Consensus 155 aH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 999865433 77887788999999999995
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.60 E-value=2e-13 Score=167.66 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCC--cEEEecCCCCHHHHHHH----HHHHhcCCCceEEEEe
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGY--TYMRLDGSTQPEERQTL----MQRFNTNPKIFLFILS 1070 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi--~y~RLDGsts~eqRq~l----IerFN~D~~ifVfLLS 1070 (1992)
|...+..++..+ ..+.++|||++.....+.+...|...+. .+..++|.++..+|.+. ++.|.+ +..+| |++
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~i-lva 284 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKFV-IVA 284 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCeE-EEE
Confidence 344455555433 3467999999999999999999988776 48999999999999764 888975 55555 788
Q ss_pred ccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcC----cEEEEEEEeCC---CHHHHHHHHHH
Q 000160 1071 TRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTR----EVHIYRLISES---TIEENILKKAN 1134 (1992)
Q Consensus 1071 TrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTR----dV~VYRLIse~---TIEErIlkra~ 1134 (1992)
|.+.+.|||+ .+++||.++.+ +....|++||++|.|... .|.||.....+ .....++++-.
T Consensus 285 T~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~ 352 (358)
T TIGR01587 285 TQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTI 352 (358)
T ss_pred Ccchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHH
Confidence 9999999999 58999998765 788899999999999764 36666555444 44555555533
No 56
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.9e-13 Score=173.68 Aligned_cols=132 Identities=23% Similarity=0.386 Sum_probs=112.6
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+..|..+|..... .++|||+......+.|...|+.+|+....|+|.+++.+|...+++|+ ++.+.| |+.|+.++
T Consensus 259 ~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~-~g~~~v-LVaTDvaa 334 (513)
T COG0513 259 EKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFK-DGELRV-LVATDVAA 334 (513)
T ss_pred HHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHH-cCCCCE-EEEechhh
Confidence 477778888776433 37999999999999999999999999999999999999999999999 577887 67889999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~ 1134 (1992)
.||++...++||.||.+.++....+++||..|.|. .=..+.|++. .-|...+....
T Consensus 335 RGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~--~G~ai~fv~~-~~e~~~l~~ie 390 (513)
T COG0513 335 RGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGR--KGVAISFVTE-EEEVKKLKRIE 390 (513)
T ss_pred ccCCccccceeEEccCCCCHHHheeccCccccCCC--CCeEEEEeCc-HHHHHHHHHHH
Confidence 99999999999999999999999999999999994 3355667776 22555555533
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.58 E-value=3.4e-13 Score=179.92 Aligned_cols=148 Identities=22% Similarity=0.227 Sum_probs=103.2
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHH-HHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC-C
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTI-AMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP-A 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtI-ALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P-~ 529 (1992)
..|+|+|..++.- .+..+.|.|++-.+|.|||+.+. +++.++.. . .+..|+|||+ .++.++..+|++|.. +
T Consensus 22 ~~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~--~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-E--GGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-c--CCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 3589999999963 23357899999999999999984 44444432 2 3579999998 678889999988754 6
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhch----hhhhccCccEEEEcCccccCCh--hhHHHHHHHhc-
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS----KVFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNF- 602 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~----~~f~r~~W~~LILDEAH~IKN~--~Sq~~qaLl~L- 602 (1992)
++|..++|...... .|. ..++|+|+|++.+..-. ..+ .+..+||+||+|.+... ....-..+..+
T Consensus 96 ~~v~~~~Gd~~~~~----~~~--~~~~IiV~Tpe~~~~ll~~~~~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l~ 167 (720)
T PRK00254 96 LRVAMTTGDYDSTD----EWL--GKYDIIIATAEKFDSLLRHGSSWI--KDVKLVVADEIHLIGSYDRGATLEMILTHML 167 (720)
T ss_pred CEEEEEeCCCCCch----hhh--ccCCEEEEcHHHHHHHHhCCchhh--hcCCEEEEcCcCccCCccchHHHHHHHHhcC
Confidence 88888888754321 122 35789999988764321 122 35789999999999643 33333333333
Q ss_pred ccceEEEEeccC
Q 000160 603 NSKRRILLTGTP 614 (1992)
Q Consensus 603 ~a~rRLLLTGTP 614 (1992)
...+.++||||+
T Consensus 168 ~~~qiI~lSATl 179 (720)
T PRK00254 168 GRAQILGLSATV 179 (720)
T ss_pred cCCcEEEEEccC
Confidence 345788999996
No 58
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=2.5e-13 Score=159.93 Aligned_cols=124 Identities=20% Similarity=0.330 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|-.+|..||+++ .|..+||||....+.+.|.-+|+.+|+....|+|.|+...|-..++.|.+ +...| |++|+.|+.
T Consensus 287 K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~i-Lv~TDVaSR 362 (476)
T KOG0330|consen 287 KDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSI-LVCTDVASR 362 (476)
T ss_pred cchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcE-EEecchhcc
Confidence 445667777765 46799999999999999999999999999999999999999999999987 44444 789999999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHH
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1126 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1126 (1992)
||+.+.+|.||.||-|-+-.....|.||..|-| +.-.+..||+..-||
T Consensus 363 GLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 363 GLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred cCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 999999999999999999999999999999999 777888899985554
No 59
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.56 E-value=4.6e-13 Score=174.16 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=106.9
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|+.++...+.++...+..|||||......+.|...|...|+++..|+|.+...+|..+..+|+. ..| +++|..
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g~V-lIATdm 481 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---GAV-TVATSM 481 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---CeE-EEEccc
Confidence 4579999999999988889999999999999999999999999999999999987777666665543 234 789999
Q ss_pred cccccCCc---------cCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1074 GGVGINLV---------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1074 GG~GLNLT---------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
+|.|+++. +-+.||.|+++-+. .+.|+.||++|.|..-.+. .|++ .|+.++.+
T Consensus 482 AgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~--~~is---~eD~l~~~ 543 (762)
T TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQ--FFVS---LEDDLIKR 543 (762)
T ss_pred cccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEE--EEEc---cchhhhhh
Confidence 99999998 88999999999665 5599999999999765533 3444 36777654
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.56 E-value=6.8e-13 Score=174.12 Aligned_cols=105 Identities=21% Similarity=0.367 Sum_probs=87.3
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHH-----HHHHHHhc----CC-----CceEEEEeccccc
Q 000160 1010 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQ-----TLMQRFNT----NP-----KIFLFILSTRSGG 1075 (1992)
Q Consensus 1010 s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq-----~lIerFN~----D~-----~ifVfLLSTrAGG 1075 (1992)
..+.++|||++.....+.|...|...|+ ..|+|.++..+|. .++++|.. .. .-..+|++|.+.+
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 3567999999999999999999998887 8999999999999 78999975 11 1134589999999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCc--EEEEEE
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE--VHIYRL 1119 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRd--V~VYRL 1119 (1992)
.||++.. ++||.++.++ ....||+||++|.|.... ++|+.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 9999988764 688999999999998654 444433
No 61
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.48 E-value=9.1e-12 Score=164.37 Aligned_cols=158 Identities=20% Similarity=0.120 Sum_probs=107.7
Q ss_pred CCCCChHHHHHHHHHHHHHHcc------CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHH
Q 000160 451 LKFPLREYQHIGLDWLVTMYEK------RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEF 523 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~------~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~Ef 523 (1992)
++.-.|.||..+++-++....+ ..+||+..-+|.|||++++.++..+... .....+|||||. .|..||..+|
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-LKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-cCCCeEEEEECcHHHHHHHHHHH
Confidence 3455899999999998877654 3589999999999999999888777643 333578999997 6899999999
Q ss_pred HHHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhch-hhhhcc----CccEEEEcCccccCChhhHHHHH
Q 000160 524 LKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS-KVFKRK----KWKYLILDEAHLIKNWKSQRWQT 598 (1992)
Q Consensus 524 kKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~-~~f~r~----~W~~LILDEAH~IKN~~Sq~~qa 598 (1992)
.++.+... .-.++....+ .. .......|+|||++.+.... ..+... ...+||+||||+.-. ......
T Consensus 314 ~~~~~~~~--~~~~s~~~L~--~~--l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~ 385 (667)
T TIGR00348 314 QSLQKDCA--ERIESIAELK--RL--LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKN 385 (667)
T ss_pred HhhCCCCC--cccCCHHHHH--HH--HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHH
Confidence 99875311 1112222111 11 12234679999999997521 111111 223899999998642 123334
Q ss_pred HH-hcccceEEEEeccCCCC
Q 000160 599 LL-NFNSKRRILLTGTPLQN 617 (1992)
Q Consensus 599 Ll-~L~a~rRLLLTGTPLQN 617 (1992)
+. .+...++++|||||+..
T Consensus 386 l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 386 LKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred HHhhCCCCcEEEEeCCCccc
Confidence 43 46677999999999864
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=1.2e-11 Score=162.47 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=109.4
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|+.+|..++......+.+|||||......+.|...|...|+++..|+|.+...+|..+...|.. + . ++++|..
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~-g--~-VlIATdm 485 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK-G--A-VTVATNM 485 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC-C--e-EEEEccc
Confidence 3569999999998887789999999999999999999999999999999999887777666666643 2 3 4789999
Q ss_pred cccccCC---ccCC-----EEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000160 1074 GGVGINL---VGAD-----TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKA 1133 (1992)
Q Consensus 1074 GG~GLNL---T~Ad-----tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra 1133 (1992)
+|.|+++ .+.. +||.||.+-|+..+.|+.||++|.|+.-... .|+ |.|+.++.+-
T Consensus 486 AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~i---s~eD~l~~~~ 548 (790)
T PRK09200 486 AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFI---SLEDDLLKRF 548 (790)
T ss_pred hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEE---cchHHHHHhh
Confidence 9999999 4666 9999999999999999999999999875443 233 4477777653
No 63
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.46 E-value=6.1e-13 Score=146.29 Aligned_cols=160 Identities=24% Similarity=0.309 Sum_probs=116.1
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC-
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA- 529 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~- 529 (1992)
..+|++||...+..+.... .++++...+|.|||..++.++.......+ .+++|||+|+ .++.||..++.++++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3578999999999877521 78899999999999977777766554332 4689999995 6889999999999876
Q ss_pred --CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhh--hhccCccEEEEcCccccCC-hhhHHHHHHHh-c-
Q 000160 530 --FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKN-WKSQRWQTLLN-F- 602 (1992)
Q Consensus 530 --lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~--f~r~~W~~LILDEAH~IKN-~~Sq~~qaLl~-L- 602 (1992)
.....+.|........... ...++|+++||..+...... +...+|.+||+||||++.+ .....+..+.. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLE---SGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHh---cCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 4455555554333332221 13348999999988876554 4556789999999999995 34444444433 4
Q ss_pred ccceEEEEeccCCCCC
Q 000160 603 NSKRRILLTGTPLQND 618 (1992)
Q Consensus 603 ~a~rRLLLTGTPLQNs 618 (1992)
+..+++++||||..+.
T Consensus 159 ~~~~~v~~saT~~~~~ 174 (201)
T smart00487 159 KNVQLLLLSATPPEEI 174 (201)
T ss_pred ccceEEEEecCCchhH
Confidence 5788999999997443
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.44 E-value=6.4e-12 Score=151.71 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=102.3
Q ss_pred HHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH----HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 1001 LAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 1001 L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~----~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
+..+++.. ...|+|+|+.......-|...|+ ...+.+-.+.|+.+...|.+++.+|+. ++|.|+| ++++.+.
T Consensus 420 ~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vLI-cSD~laR 495 (620)
T KOG0350|consen 420 VYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVLI-CSDALAR 495 (620)
T ss_pred HHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEEE-ehhhhhc
Confidence 34444433 56799999999887776666665 446667779999999999999999997 7898865 4589999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKR 1137 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr 1137 (1992)
||++-+.+.||.|||+-.-.....|+||..|-||. -+.|.|+... |++.+.+...|.
T Consensus 496 GiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~--G~a~tll~~~--~~r~F~klL~~~ 552 (620)
T KOG0350|consen 496 GIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQD--GYAITLLDKH--EKRLFSKLLKKT 552 (620)
T ss_pred CCcccccceEeecCCCchhhHHHHhhcccccccCC--ceEEEeeccc--cchHHHHHHHHh
Confidence 99999999999999999999999999999999984 5667777776 556666544443
No 65
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.44 E-value=3.3e-11 Score=157.62 Aligned_cols=126 Identities=12% Similarity=0.208 Sum_probs=94.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHc--CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLY--GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~--Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
.+.++|||..-...++.+...|... |+.+..|+|.++. +++.+++|..+++.+| |++|..+..||++.+.++||-
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kI-LVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSI-IISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeE-EeccChhhccccccCeeEEEE
Confidence 3568999999999999999999877 7999999999984 5677888854456655 799999999999999999999
Q ss_pred ecCCC------------ChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q 000160 1089 YDSDW------------NPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 1145 (1992)
Q Consensus 1089 yD~dW------------NPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq 1145 (1992)
++... +.+.-.||.||++|. ++-.+|||.++....- |.+. ....|...|++
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p-I~ri--~~~~L~~~vL~ 533 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP-IKRI--DSEFLHNYILY 533 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH-HHHH--hHHHHHHHHHH
Confidence 97222 444455666665554 6899999999887532 2221 12235666654
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=99.41 E-value=7.8e-12 Score=171.83 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHH---HHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEe---
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKM---LDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILS--- 1070 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~m---LDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLS--- 1070 (1992)
|...|..+++.+ |..+|||++.... ++.|..+|+.+|++...++|.+ .+.+++|.+ +++.|+|.+
T Consensus 316 k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~-G~~~VLVatas~ 386 (1176)
T PRK09401 316 SVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE-GEVDVLVGVASY 386 (1176)
T ss_pred HHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC-CCCCEEEEecCC
Confidence 566677777655 4589999998766 9999999999999999999999 234599975 788887776
Q ss_pred ccccccccCCcc-CCEEEEecCCC------ChhhHHHHHHhhcc
Q 000160 1071 TRSGGVGINLVG-ADTVIFYDSDW------NPAMDQQAQDRCHR 1107 (1992)
Q Consensus 1071 TrAGG~GLNLT~-AdtVIfyD~dW------NPa~d~QA~gRahR 1107 (1992)
|..++.||++.. ..+|||||.|- ......-+++|.-+
T Consensus 387 tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 387 YGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 789999999998 89999999986 44445566666653
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.41 E-value=2.9e-11 Score=156.81 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=111.2
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
..|+.++...+.++...|..|||||......+.|...|..+|+++..|+|. ..+|.+.|..|.. ....| +++|..+
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag-~~g~V-tIATnmA 463 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG-RKGAV-TIATNMA 463 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC-CCceE-EEEeccc
Confidence 468999999998888999999999999999999999999999999999998 5689999999964 44444 7888999
Q ss_pred ccccCCcc-------CCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000160 1075 GVGINLVG-------ADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1075 G~GLNLT~-------AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~ 1134 (1992)
|.|+++.. .-+||.++.+-|+..+.|+.||++|.|..-.... |+ +.|+.++.+..
T Consensus 464 gRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~--~l---s~eD~l~~~~~ 525 (745)
T TIGR00963 464 GRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF--FL---SLEDNLMRIFG 525 (745)
T ss_pred cCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE--EE---eccHHHHHhhh
Confidence 99999876 6799999999999999999999999998765444 33 33566665433
No 68
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.41 E-value=1.4e-12 Score=135.09 Aligned_cols=136 Identities=23% Similarity=0.261 Sum_probs=101.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHCC-CCeEEEEeCchhHHHHhhhccCCC
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWCP-AFKILTYFGSAKERKFKRQGWLKP 552 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N-We~EfkKw~P-~lKVL~Y~Gs~keRk~kr~gw~k~ 552 (1992)
++++...+|.|||.+++.++..+... +..+++|||||+..+.+ |...+.+|.. ...+..+.+......... ...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEK---LLS 77 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHH---Hhc
Confidence 68999999999999999999887764 34578999999976555 5667777775 566777776654443321 112
Q ss_pred CCceEEEEeehhhhhchhh--hhccCccEEEEcCccccCChhhHHH---HHHHhcccceEEEEeccC
Q 000160 553 NSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNWKSQRW---QTLLNFNSKRRILLTGTP 614 (1992)
Q Consensus 553 ~~fdVVITSYe~l~qD~~~--f~r~~W~~LILDEAH~IKN~~Sq~~---qaLl~L~a~rRLLLTGTP 614 (1992)
...+|+|+||+.+.+.... +....|++||+||+|.+.+...... .........+++++||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4678999999988765433 2345799999999999998765553 344456778999999999
No 69
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.40 E-value=3.8e-13 Score=129.34 Aligned_cols=78 Identities=35% Similarity=0.609 Sum_probs=72.4
Q ss_pred HHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccC
Q 000160 1030 EFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIG 1109 (1992)
Q Consensus 1030 ~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIG 1109 (1992)
.+|+..|+.+..++|.++..+|+.+++.|+.. ... +|++|.+++.|||++.+++||+|+++||+....|++|||+|+|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~-vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIR-VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSS-EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-Cce-EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 47899999999999999999999999999974 344 4678899999999999999999999999999999999999998
No 70
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=5e-10 Score=144.84 Aligned_cols=132 Identities=18% Similarity=0.292 Sum_probs=107.4
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|..+|..++..+...+..||||+......+.|...|...|+++..|+|... +|+..+..|... ... ++++|..
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~-~g~-VlVATdm 530 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQ-RGR-ITVATNM 530 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCC-CCc-EEEEccc
Confidence 346999999999988777889999999999999999999999999999999865 666666666532 233 4789999
Q ss_pred cccccCCc---cCC-----EEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000160 1074 GGVGINLV---GAD-----TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1074 GG~GLNLT---~Ad-----tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~ 1134 (1992)
+|.|+++. ... +||.||.+=|+..+.|++||++|.|..-.+ +-|+ |.|+.++.+-.
T Consensus 531 AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~~~ 594 (656)
T PRK12898 531 AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQSFL 594 (656)
T ss_pred hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHhhh
Confidence 99999987 333 999999999999999999999999975433 3344 34777776643
No 71
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.37 E-value=4.4e-11 Score=165.16 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=83.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcC---------------------------------CcEEEecCCCCHHHHHHHHHH
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYG---------------------------------YTYMRLDGSTQPEERQTLMQR 1057 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~G---------------------------------i~y~RLDGsts~eqRq~lIer 1057 (1992)
.+.++|||++..+..+.|...|+..+ +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 35789999999999999998887532 113467899999999999999
Q ss_pred HhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhccc
Q 000160 1058 FNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRI 1108 (1992)
Q Consensus 1058 FN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRI 1108 (1992)
|.+ +.++| |++|.+...|||+...|.||.|+++.+.+...|++||++|-
T Consensus 323 fK~-G~Lrv-LVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKS-GELRC-VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHh-CCceE-EEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 986 67877 68889999999999999999999999999999999999984
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.30 E-value=7.7e-11 Score=162.39 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=91.3
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC--
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA-- 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~-- 529 (1992)
..+.++|..++..++. +.+.++.-.+|.|||.-++.++.++.. . .+.+|||+|+ .|+.|+...|++++..
T Consensus 77 ~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~-~--g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK-K--GKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred CCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh-c--CCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 4679999988877654 667888899999999855544444432 2 2578999999 5788899999998863
Q ss_pred Ce---EEEEeCchhHHH--HhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCC
Q 000160 530 FK---ILTYFGSAKERK--FKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN 590 (1992)
Q Consensus 530 lK---VL~Y~Gs~keRk--~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN 590 (1992)
++ ++.|+|...... .... ....+.++|+|+|...+......+.. .+++|||||||.+-.
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~-~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFME-RIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHH-HHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 33 345777543221 1111 12235689999999988766554444 799999999999854
No 73
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.30 E-value=5.6e-11 Score=146.15 Aligned_cols=122 Identities=17% Similarity=0.245 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|++.|..++..+ .=...|||+....-.+-|..+|...|+.+..|.|.|+..+|..+|+.+.+ -.++| |+||+..+.
T Consensus 259 klq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rI-LVsTDLtaR 334 (980)
T KOG4284|consen 259 KLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRI-LVSTDLTAR 334 (980)
T ss_pred HHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEE-EEecchhhc
Confidence 566666666555 22467999999999999999999999999999999999999999999875 56776 789999999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
||+-..+|-||.+|++-|......||||++|.|- +-..|..+..+.
T Consensus 335 GIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~-~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 335 GIDADNVNLVVNIDAPADEETYFHRIGRAGRFGA-HGAAVTLLEDER 380 (980)
T ss_pred cCCccccceEEecCCCcchHHHHHHhhhcccccc-cceeEEEeccch
Confidence 9999999999999999999999999999999996 455555555543
No 74
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.28 E-value=3.3e-10 Score=150.01 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=104.3
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF 530 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~l 530 (1992)
...|+++|..+++.+.... .+...+|.-.+|.|||...+.++...... | +.+||+||+ .+..||...|+++++ .
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-g--~~vLvLvPt~~L~~Q~~~~l~~~fg-~ 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-G--KQALVLVPEIALTPQMLARFRARFG-A 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc-C--CeEEEEeCcHHHHHHHHHHHHHHhC-C
Confidence 3579999999999887632 34568888899999999988776655432 2 479999998 588999999998874 6
Q ss_pred eEEEEeCchhHHHHhhhccC--CCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCCh--hh-----HHHHHHHh
Q 000160 531 KILTYFGSAKERKFKRQGWL--KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNW--KS-----QRWQTLLN 601 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~--k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~--~S-----q~~qaLl~ 601 (1992)
++..++|...... ....|. ..+..+|||+|...+.. .-.+..+|||||+|...-. .. .....++.
T Consensus 217 ~v~~~~s~~s~~~-r~~~~~~~~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 217 PVAVLHSGLSDGE-RLDEWRKAKRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred CEEEEECCCCHHH-HHHHHHHHHcCCCCEEEeccHHhcc-----cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 8888887643221 112232 22457899999876642 2245789999999976321 11 11111112
Q ss_pred -cccceEEEEeccCC
Q 000160 602 -FNSKRRILLTGTPL 615 (1992)
Q Consensus 602 -L~a~rRLLLTGTPL 615 (1992)
......+++|+||-
T Consensus 291 ~~~~~~~il~SATps 305 (679)
T PRK05580 291 KLENIPVVLGSATPS 305 (679)
T ss_pred hccCCCEEEEcCCCC
Confidence 23446889999996
No 75
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.27 E-value=1.1e-11 Score=118.43 Aligned_cols=81 Identities=35% Similarity=0.588 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhc
Q 000160 1027 ILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCH 1106 (1992)
Q Consensus 1027 ILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRah 1106 (1992)
.|..+|+..++.+..++|.++..+|+.+++.|+... . ++|++|.+++.|+|++.+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGK-I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCC-C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 467788888999999999999999999999998743 3 56789999999999999999999999999999999999999
Q ss_pred ccC
Q 000160 1107 RIG 1109 (1992)
Q Consensus 1107 RIG 1109 (1992)
|+|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.27 E-value=3.5e-10 Score=139.56 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=69.5
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcC--CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYG--YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~G--i~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
.+.|+|||++.....+.|...|+..| +.+..++|.++..+|.+.+ ++. +|++|.+.+.||++.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhcccCCCC-ceEE-
Confidence 57899999999999999999998765 5788999999988887653 333 5789999999999975 5776
Q ss_pred ecCCCChhhHHHHHHhhc
Q 000160 1089 YDSDWNPAMDQQAQDRCH 1106 (1992)
Q Consensus 1089 yD~dWNPa~d~QA~gRah 1106 (1992)
++ +-++....|++||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 56 457778888888864
No 77
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=3.1e-10 Score=140.04 Aligned_cols=149 Identities=22% Similarity=0.308 Sum_probs=121.1
Q ss_pred chHHHHHHHHHHHh---hC----CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000160 996 GKLQELAILLRKLK---SD----GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1068 (1992)
Q Consensus 996 gKLq~L~~LL~kLk---s~----G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfL 1068 (1992)
.|...|..+|.... .. -++++||..-.++++.|..+|...|+.|..|+|..+..+|.+.+..|.. +++.| |
T Consensus 314 ~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pv-l 391 (482)
T KOG0335|consen 314 EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPV-L 391 (482)
T ss_pred hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcce-E
Confidence 45555555555443 11 2599999999999999999999999999999999999999999999975 67777 5
Q ss_pred EeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 000160 1069 LSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGG 1148 (1992)
Q Consensus 1069 LSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~ 1148 (1992)
+.|..+..|||..+..|||.||.+=+-.....++||.+|-|++--.+.+.= . . .++-...|.+.+.+.++
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n--~--~------~~~i~~~L~~~l~ea~q 461 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN--E--K------NQNIAKALVEILTEANQ 461 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec--c--c------cchhHHHHHHHHHHhcc
Confidence 778999999999999999999999999999999999999999877665432 1 1 22334567777888888
Q ss_pred CCccccCc
Q 000160 1149 YNTEFFKK 1156 (1992)
Q Consensus 1149 f~~~~fk~ 1156 (1992)
-.+.|++.
T Consensus 462 ~vP~wl~~ 469 (482)
T KOG0335|consen 462 EVPQWLSE 469 (482)
T ss_pred cCcHHHHh
Confidence 88888765
No 78
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.24 E-value=2.1e-09 Score=141.28 Aligned_cols=122 Identities=22% Similarity=0.183 Sum_probs=100.3
Q ss_pred HHHhhCCCeEEEEeCchHHHHHHHHHHHHcC-CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCC
Q 000160 1006 RKLKSDGHRALIFTQMTKMLDILEEFISLYG-YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGAD 1084 (1992)
Q Consensus 1006 ~kLks~G~KVLIFSQ~t~mLDILe~~L~~~G-i~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~Ad 1084 (1992)
..+......+|||++...+...|...|+..+ ..+..=+||.+.++|...-++|.+ +.+++ +++|.+...||+.-..|
T Consensus 247 ~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lra-vV~TSSLELGIDiG~vd 324 (814)
T COG1201 247 AELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKA-VVATSSLELGIDIGDID 324 (814)
T ss_pred HHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceE-EEEccchhhccccCCce
Confidence 3333344589999999999999999998887 788888999999999999999987 56888 56778999999999999
Q ss_pred EEEEecCCCChhhHHHHHHhhc-ccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000160 1085 TVIFYDSDWNPAMDQQAQDRCH-RIGQTREVHIYRLISESTIEENILKKA 1133 (1992)
Q Consensus 1085 tVIfyD~dWNPa~d~QA~gRah-RIGQTRdV~VYRLIse~TIEErIlkra 1133 (1992)
.||.|-+|-.-+...|++||++ |+|. |.-+++|+.+ .++.+--.+
T Consensus 325 lVIq~~SP~sV~r~lQRiGRsgHr~~~---~Skg~ii~~~-r~dllE~~v 370 (814)
T COG1201 325 LVIQLGSPKSVNRFLQRIGRAGHRLGE---VSKGIIIAED-RDDLLECLV 370 (814)
T ss_pred EEEEeCCcHHHHHHhHhccccccccCC---cccEEEEecC-HHHHHHHHH
Confidence 9999999999999999999984 5554 4455566666 555554443
No 79
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.22 E-value=9.5e-10 Score=139.98 Aligned_cols=107 Identities=24% Similarity=0.294 Sum_probs=96.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecC
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1091 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~ 1091 (1992)
+...|||+...+..+-|..+|...|+....++|++..++|+..-++|+. .++.| |+.|.|.|-|||=..--.||+||.
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~i-iVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN-DEIKV-MVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcE-EEEeccccCccCCCCceEEEEecC
Confidence 4457999999999999999999999999999999999999999999996 45555 688899999999999999999999
Q ss_pred CCChhhHHHHHHhhcccCCcCcEEEEEEEeC
Q 000160 1092 DWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1122 (1992)
Q Consensus 1092 dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1122 (1992)
|=+.....|=+||++|-|..-...+ |.+.
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail--l~~~ 336 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL--LYSP 336 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE--eecc
Confidence 9999999999999999998666544 4553
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=2.7e-09 Score=140.50 Aligned_cols=132 Identities=17% Similarity=0.242 Sum_probs=115.3
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
.-.|+.++...+.++...|..|||||......+.|...|...|+++..|+|.....+|+.+.+.|... . ++++|..
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-~---VtIATNm 501 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-A---VTIATNM 501 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-c---EEEeccC
Confidence 35799999999999999999999999999999999999999999999999999999999999999864 2 4788999
Q ss_pred cccccCCc--------------------------------------cCCEEEEecCCCChhhHHHHHHhhcccCCcCcEE
Q 000160 1074 GGVGINLV--------------------------------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVH 1115 (1992)
Q Consensus 1074 GG~GLNLT--------------------------------------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~ 1115 (1992)
+|.|+++. |.=+||.-.-.=|--+|.|..|||+|.|..-...
T Consensus 502 AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~ 581 (896)
T PRK13104 502 AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSR 581 (896)
T ss_pred ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 99998864 3348999999999999999999999999877665
Q ss_pred EEEEEeCCCHHHHHHHHHH
Q 000160 1116 IYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1116 VYRLIse~TIEErIlkra~ 1134 (1992)
.|- |.|+.++.+-.
T Consensus 582 f~l-----SleD~l~~~f~ 595 (896)
T PRK13104 582 FYL-----SLEDNLMRIFA 595 (896)
T ss_pred EEE-----EcCcHHHHHhC
Confidence 543 56778876543
No 81
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.21 E-value=8.7e-10 Score=134.52 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHH--cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL--YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~--~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
|+..|-..|+.. -..|.|||-..-+-..++...+.. .|++.+-|+|.++..+|-.+..+|.... .++|.+|..+
T Consensus 300 Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~--~~vLF~TDv~ 375 (758)
T KOG0343|consen 300 KIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR--AVVLFCTDVA 375 (758)
T ss_pred HHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc--ceEEEeehhh
Confidence 666666666543 245889998888888887777653 4999999999999999999999998633 3568899999
Q ss_pred ccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000160 1075 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQK 1136 (1992)
Q Consensus 1075 G~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qK 1136 (1992)
+.||++...|.||-||.|=+-.....|.||+-|.+-.-...+|-+-+ =||.++.+.+.|
T Consensus 376 aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~ps---EeE~~l~~Lq~k 434 (758)
T KOG0343|consen 376 ARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPS---EEEAMLKKLQKK 434 (758)
T ss_pred hccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcch---hHHHHHHHHHHc
Confidence 99999999999999999999999999999999999888877665443 368888886665
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.19 E-value=2.5e-09 Score=135.83 Aligned_cols=161 Identities=22% Similarity=0.332 Sum_probs=111.8
Q ss_pred CCCCChHHHHHHHHHHHHHHc--cCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH-HHHHHHHHHC
Q 000160 451 LKFPLREYQHIGLDWLVTMYE--KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML-NWETEFLKWC 527 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye--~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~-NWe~EfkKw~ 527 (1992)
|-+.|-..|+..++=+..=.. ..+|=+|--++|.|||+.++..+... ...| +-..+.+||.++. |--..|.+|+
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G--~Q~ALMAPTEILA~QH~~~~~~~l 335 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAG--YQAALMAPTEILAEQHYESLRKWL 335 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcC--CeeEEeccHHHHHHHHHHHHHHHh
Confidence 345688999999987654222 23466888889999999886544433 3334 3578899998765 5788899999
Q ss_pred C--CCeEEEEeCchhHHHHh-hhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-c
Q 000160 528 P--AFKILTYFGSAKERKFK-RQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-N 603 (1992)
Q Consensus 528 P--~lKVL~Y~Gs~keRk~k-r~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-~ 603 (1992)
+ ++.|....|+-+....+ ...-...+..++||-|+.++. |.-.|+ +..+||+||=|++. .+.-..|++- .
T Consensus 336 ~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-d~V~F~--~LgLVIiDEQHRFG---V~QR~~L~~KG~ 409 (677)
T COG1200 336 EPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-DKVEFH--NLGLVIIDEQHRFG---VHQRLALREKGE 409 (677)
T ss_pred hhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-cceeec--ceeEEEEecccccc---HHHHHHHHHhCC
Confidence 7 57777778876543221 112234567899999998764 333444 35899999999874 4444555554 3
Q ss_pred -cceEEEEeccCCCCChH
Q 000160 604 -SKRRILLTGTPLQNDLM 620 (1992)
Q Consensus 604 -a~rRLLLTGTPLQNsL~ 620 (1992)
..+.|.|||||+..+|.
T Consensus 410 ~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 410 QNPHVLVMTATPIPRTLA 427 (677)
T ss_pred CCCcEEEEeCCCchHHHH
Confidence 47999999999987754
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.18 E-value=3.9e-09 Score=141.47 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=82.3
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcC---CcEEEecCCCCHHHH----HHHHHHHhcCCCc--eEEEEeccccccccCC
Q 000160 1010 SDGHRALIFTQMTKMLDILEEFISLYG---YTYMRLDGSTQPEER----QTLMQRFNTNPKI--FLFILSTRSGGVGINL 1080 (1992)
Q Consensus 1010 s~G~KVLIFSQ~t~mLDILe~~L~~~G---i~y~RLDGsts~eqR----q~lIerFN~D~~i--fVfLLSTrAGG~GLNL 1080 (1992)
..|.+||||++.+.....+...|...+ +.+..++|.++..+| ++++++|..+++. ..+|++|.....||++
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 468899999999999999999998765 678999999999999 5688999543332 2458999999999999
Q ss_pred ccCCEEEEecCCCChhhHHHHHHhhcccCCc
Q 000160 1081 VGADTVIFYDSDWNPAMDQQAQDRCHRIGQT 1111 (1992)
Q Consensus 1081 T~AdtVIfyD~dWNPa~d~QA~gRahRIGQT 1111 (1992)
.+|.||....+ .....|++|||||-|..
T Consensus 638 -d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 -DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred -CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 57988886655 46789999999999975
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.17 E-value=1.6e-09 Score=152.47 Aligned_cols=130 Identities=14% Similarity=0.298 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC----
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP---- 528 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P---- 528 (1992)
.+++.|...+..++. +...++.-.+|.|||+..+ +++......| ...|||+|+ .|+.|....|+.++.
T Consensus 79 ~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~-~~al~~~~~g--~~aLVl~PTreLa~Qi~~~l~~l~~~~~~ 151 (1638)
T PRK14701 79 EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGA-FIALFLALKG--KKCYIILPTTLLVKQTVEKIESFCEKANL 151 (1638)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHH-HHHHHHHhcC--CeEEEEECHHHHHHHHHHHHHHHHhhcCC
Confidence 479999999988776 5677888899999998322 2222221122 368999999 688899999998774
Q ss_pred CCeEEEEeCchhHHHHhh-hccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCC
Q 000160 529 AFKILTYFGSAKERKFKR-QGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN 590 (1992)
Q Consensus 529 ~lKVL~Y~Gs~keRk~kr-~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN 590 (1992)
+.++..|+|......... ......+.++|+|+|...+......+....+++|||||||.+-.
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccc
Confidence 356778888654322110 01123356899999999887654444446799999999998853
No 85
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.16 E-value=9.7e-10 Score=133.86 Aligned_cols=118 Identities=23% Similarity=0.384 Sum_probs=94.2
Q ss_pred HHHHHHHHHHh--hCCCeEEEEeCchHHHHHHHHHHH----H------------------cCCcEEEecCCCCHHHHHHH
Q 000160 999 QELAILLRKLK--SDGHRALIFTQMTKMLDILEEFIS----L------------------YGYTYMRLDGSTQPEERQTL 1054 (1992)
Q Consensus 999 q~L~~LL~kLk--s~G~KVLIFSQ~t~mLDILe~~L~----~------------------~Gi~y~RLDGsts~eqRq~l 1054 (1992)
-.|..+|.... ....|+|||-....+.+.=...|. . .+.++.||+|+|..++|...
T Consensus 410 V~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~ 489 (708)
T KOG0348|consen 410 VALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSV 489 (708)
T ss_pred HHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHH
Confidence 34455554442 234588999888888765444432 2 24579999999999999999
Q ss_pred HHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEE
Q 000160 1055 MQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYR 1118 (1992)
Q Consensus 1055 IerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYR 1118 (1992)
+..|....+. +||+|++++.||+|....-||-||++..|+....|+||.-|||-+-.-..|-
T Consensus 490 f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL 551 (708)
T KOG0348|consen 490 FQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFL 551 (708)
T ss_pred HHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEe
Confidence 9999875544 6899999999999999999999999999999999999999999887765543
No 86
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.15 E-value=5.1e-09 Score=126.61 Aligned_cols=120 Identities=17% Similarity=0.317 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHH--cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL--YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~--~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
-|++.|..+|.. ....|+|||-..-...++...+|.. .++..+-|+|.++..+|...++.|...++- .|++|+.
T Consensus 241 eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~--vl~~TDV 316 (567)
T KOG0345|consen 241 EKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG--VLFCTDV 316 (567)
T ss_pred HHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--eEEeehh
Confidence 378888888876 3567999999888888888887754 478899999999999999999999873332 4788999
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEE
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRL 1119 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRL 1119 (1992)
++.||++.+.|.||.||||-+|.+...+.||..|.|..-.-.|+-+
T Consensus 317 aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 317 AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999999999999999999999999999999999998777666443
No 87
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.14 E-value=2.8e-10 Score=145.56 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=119.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHccCc-cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec-CCcHHHHHHHHH
Q 000160 447 FPFLLKFPLREYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP-TSVMLNWETEFL 524 (1992)
Q Consensus 447 vP~lLk~~LRpYQ~~GL~WLvslye~~l-gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVP-tSLL~NWe~Efk 524 (1992)
.|......+|.||+.+++.+..-+.++. ..+|..-+|.|||.++|++|..|.. .+..+.+|.+|= ++|+.|=..+|.
T Consensus 158 ~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 158 IDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHH
Confidence 3444566799999999999998877655 4678999999999999999998865 466688999996 588999999999
Q ss_pred HHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhch-------hhhhccCccEEEEcCccccCChhhHHHH
Q 000160 525 KWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS-------KVFKRKKWKYLILDEAHLIKNWKSQRWQ 597 (1992)
Q Consensus 525 Kw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~-------~~f~r~~W~~LILDEAH~IKN~~Sq~~q 597 (1992)
+|.|........-... ...++.|+|.||+++.... ..|..-.|++||+||||+= -.+.|+
T Consensus 237 ~~~P~~~~~n~i~~~~----------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~ 303 (875)
T COG4096 237 DFLPFGTKMNKIEDKK----------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWS 303 (875)
T ss_pred HhCCCccceeeeeccc----------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhH
Confidence 9999765544432211 1136899999999997542 2355556999999999963 244566
Q ss_pred HHHhcccceEEEEeccCCC
Q 000160 598 TLLNFNSKRRILLTGTPLQ 616 (1992)
Q Consensus 598 aLl~L~a~rRLLLTGTPLQ 616 (1992)
.++..-.-.+.+||+||-.
T Consensus 304 ~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 304 SILDYFDAATQGLTATPKE 322 (875)
T ss_pred HHHHHHHHHHHhhccCccc
Confidence 7777666667777999976
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.14 E-value=5.1e-10 Score=126.60 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=108.1
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHH-HHHHHHHHHhc-CCCCcEEEEecC-CcHHHHHHHHHHHCC--
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMT-IAMLAHLACEK-GIWGPHLIVVPT-SVMLNWETEFLKWCP-- 528 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQt-IALLa~La~ek-g~~GP~LIVVPt-SLL~NWe~EfkKw~P-- 528 (1992)
.|++||..++.-+.. +.+.+++-.+|.|||+.. +.++.++.... ...+.+|||+|+ .++.||...+.++..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 479999999987765 678999999999999884 44455554431 233568999998 578889999988865
Q ss_pred CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhch--hhhhccCccEEEEcCccccCChh-hHHHH-HHHhcc-
Q 000160 529 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNWK-SQRWQ-TLLNFN- 603 (1992)
Q Consensus 529 ~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~--~~f~r~~W~~LILDEAH~IKN~~-Sq~~q-aLl~L~- 603 (1992)
+.++..++|.......... +. ...+|+|+|...+.... ..+.-..+.++|+||+|.+.+.. ..... .+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~--~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRK-LK--RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173 (203)
T ss_pred CceEEEEECCCCHHHHHHH-hc--CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc
Confidence 5778888887655433222 11 46789999987664431 11333457899999999986543 22222 233333
Q ss_pred cceEEEEeccCC
Q 000160 604 SKRRILLTGTPL 615 (1992)
Q Consensus 604 a~rRLLLTGTPL 615 (1992)
..+.+++|+||-
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 467899999998
No 89
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.13 E-value=4e-09 Score=127.66 Aligned_cols=155 Identities=25% Similarity=0.359 Sum_probs=125.8
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+++|.+.|....+.| +||||.--....+-|..-|...||.+..++|.+...+|.+.+..|.. +++.| |+-|....
T Consensus 453 ~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~V-lvatDvaa 529 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPV-LVATDVAA 529 (731)
T ss_pred HHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCce-EEEeeHhh
Confidence 58888988888887776 89999988888999999999999999999999999999999999986 45556 56679999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHH-----HHHHHHHH--HHHHHHHHHhcCC
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEE-----NILKKANQ--KRALDDLVIQSGG 1148 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE-----rIlkra~q--Kr~L~~~vIq~g~ 1148 (1992)
.|+++...-|||+||.--.-.+-.|++||..|-|-+ -..|.||++.-.+- |.|+-+.| =..|.++++..+.
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~ 607 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSW 607 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhh
Confidence 999999999999999887778889999999999976 66799999887662 22332222 2456666776666
Q ss_pred CCccccC
Q 000160 1149 YNTEFFK 1155 (1992)
Q Consensus 1149 f~~~~fk 1155 (1992)
|...-|+
T Consensus 608 fr~~r~~ 614 (731)
T KOG0339|consen 608 FRSSRFG 614 (731)
T ss_pred hhhhhcc
Confidence 5544443
No 90
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.12 E-value=8.2e-09 Score=138.78 Aligned_cols=133 Identities=23% Similarity=0.302 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHH----HHHHHcC----CcEEEecCCCCHHHHHHHHHHHhcCCCceEE
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILE----EFISLYG----YTYMRLDGSTQPEERQTLMQRFNTNPKIFLF 1067 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe----~~L~~~G----i~y~RLDGsts~eqRq~lIerFN~D~~ifVf 1067 (1992)
.+...+..++..+..+|-++|+|+.+..++..+. ..+...| .....+.|++..++|..+...|.. +++.+
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~~~- 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GELLG- 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCccE-
Confidence 3455566667777778999999999999999886 4455555 567888999999999999999986 55544
Q ss_pred EEeccccccccCCccCCEEEEecCCC-ChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1068 ILSTRSGGVGINLVGADTVIFYDSDW-NPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1068 LLSTrAGG~GLNLT~AdtVIfyD~dW-NPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
+++|.+.-+||.+-+.+.||.+--+- .-....|+.||++|-||.-.+ +-..-.+-++..++..
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~--~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV--LVVLRSDPLDSYYLRH 431 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE--EEEeCCCccchhhhhC
Confidence 78999999999999999999999877 557778999999999954432 2233366777766543
No 91
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.11 E-value=3.5e-09 Score=141.82 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=89.6
Q ss_pred CCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1012 GHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
+.++|||..-...++.+...|.. .++..+.|+|+++.++|+++++.|.. +..+| |++|..+..||++.+.++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkV-lVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKV-VLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEE-EEecchHhhcccccCceEEEE
Confidence 45899999999999999999976 47899999999999999999999975 45555 789999999999999999999
Q ss_pred ecCC----CChhh--------------HHHHHHhhcccCCcCcEEEEEEEeCCC
Q 000160 1089 YDSD----WNPAM--------------DQQAQDRCHRIGQTREVHIYRLISEST 1124 (1992)
Q Consensus 1089 yD~d----WNPa~--------------d~QA~gRahRIGQTRdV~VYRLIse~T 1124 (1992)
++.. |||.. -.||.||++|. ++=..|||+++..
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 8864 56644 35666666664 7888999998753
No 92
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.11 E-value=3e-09 Score=141.13 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=106.7
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC-CCe
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP-AFK 531 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P-~lK 531 (1992)
.|+++|+..+.-.+. . +.|.|+|-.+|.|||+.+...|.....+. .++.+-|||. +|..+=..+|++|-. +++
T Consensus 31 el~~~qq~av~~~~~--~-~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL--S-DENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc--C-CCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 789999999974332 2 88999999999999999887766554432 4799999998 778888889996653 799
Q ss_pred EEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhh--hccCccEEEEcCccccCCh-h-----hHHHHHHHhcc
Q 000160 532 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVF--KRKKWKYLILDEAHLIKNW-K-----SQRWQTLLNFN 603 (1992)
Q Consensus 532 VL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f--~r~~W~~LILDEAH~IKN~-~-----Sq~~qaLl~L~ 603 (1992)
|.+++|........ ...++|+||||+.+-.-...+ --...++|||||+|.|... . +-.++ ++.++
T Consensus 106 V~~~TgD~~~~~~~------l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r-~~~~~ 178 (766)
T COG1204 106 VGISTGDYDLDDER------LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVAR-MRRLN 178 (766)
T ss_pred EEEecCCcccchhh------hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHH-HHhhC
Confidence 99999988654421 257889999999874321111 1224689999999999765 1 22222 22233
Q ss_pred c-ceEEEEecc
Q 000160 604 S-KRRILLTGT 613 (1992)
Q Consensus 604 a-~rRLLLTGT 613 (1992)
. -+.++||+|
T Consensus 179 ~~~rivgLSAT 189 (766)
T COG1204 179 ELIRIVGLSAT 189 (766)
T ss_pred cceEEEEEeee
Confidence 3 477899999
No 93
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.10 E-value=1.7e-08 Score=122.66 Aligned_cols=123 Identities=25% Similarity=0.377 Sum_probs=102.9
Q ss_pred HHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCC
Q 000160 1001 LAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINL 1080 (1992)
Q Consensus 1001 L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNL 1080 (1992)
|..|+.++. -.+++||.+......-|.-.|-..|++..-|+|+.+..||-..+++|.. ..|.| |++|..++.||++
T Consensus 417 l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidv-LiaTDvAsRGLDI 492 (691)
T KOG0338|consen 417 LASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDV-LIATDVASRGLDI 492 (691)
T ss_pred HHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCE-EEEechhhccCCc
Confidence 334444443 4589999999999999999999999999999999999999999999985 67877 6889999999999
Q ss_pred ccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHH
Q 000160 1081 VGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK 1131 (1992)
Q Consensus 1081 T~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlk 1131 (1992)
.+.-+||.|+.|-.--....++||.-|-|.- -+-..|+.++ |-+|++
T Consensus 493 ~gV~tVINy~mP~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~--dRkllK 539 (691)
T KOG0338|consen 493 EGVQTVINYAMPKTIEHYLHRVGRTARAGRA--GRSVTLVGES--DRKLLK 539 (691)
T ss_pred cceeEEEeccCchhHHHHHHHhhhhhhcccC--cceEEEeccc--cHHHHH
Confidence 9999999999999999999999999998854 2334477776 444443
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=6.1e-08 Score=127.75 Aligned_cols=131 Identities=17% Similarity=0.236 Sum_probs=113.7
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
.-.|..++..-+.++...|..|||||......+.|...|...|+.+..|++.....+|..+.+.|+.. . ++++|..
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G-~---VtIATnm 506 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTG-A---VTIATNM 506 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCC-c---EEEecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999863 3 4788999
Q ss_pred cccccCCc-------------------------------------cCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEE
Q 000160 1074 GGVGINLV-------------------------------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1116 (1992)
Q Consensus 1074 GG~GLNLT-------------------------------------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1116 (1992)
+|.|+++. |.=+||.-..+=|--+|.|..|||+|.|..-....
T Consensus 507 AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f 586 (908)
T PRK13107 507 AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRF 586 (908)
T ss_pred cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeE
Confidence 99999864 33489999999999999999999999998766544
Q ss_pred EEEEeCCCHHHHHHHHH
Q 000160 1117 YRLISESTIEENILKKA 1133 (1992)
Q Consensus 1117 YRLIse~TIEErIlkra 1133 (1992)
|- |.|+.++.+-
T Consensus 587 ~l-----SlED~L~r~f 598 (908)
T PRK13107 587 YL-----SMEDSLMRIF 598 (908)
T ss_pred EE-----EeCcHHHHHh
Confidence 42 5677777653
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=1.5e-08 Score=130.24 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=74.5
Q ss_pred HHHHHHHHHHc--CCcEEEecCCCCHHHH--HHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCC---Ch--
Q 000160 1025 LDILEEFISLY--GYTYMRLDGSTQPEER--QTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDW---NP-- 1095 (1992)
Q Consensus 1025 LDILe~~L~~~--Gi~y~RLDGsts~eqR--q~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dW---NP-- 1095 (1992)
.+.++..|... +.++.++|+.++...+ ..+++.|.. +++.| |++|...+.|+++...+.|+++|.|- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~-g~~~I-LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN-GKADI-LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc-CCCCE-EEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 45556666544 7899999999876555 899999986 56666 67889999999999999998777652 23
Q ss_pred -------hhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1096 -------AMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1096 -------a~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
....|+.||++|-|....|.|..+-..+
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 6789999999998887777665444443
No 96
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.04 E-value=2.9e-08 Score=116.88 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=106.8
Q ss_pred cchHHHHHHHHHHHhh-CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 995 CGKLQELAILLRKLKS-DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks-~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
.+|=.+|..+|+..+. +...++||+|-++...+|...|+..++....+++-++..+|-..+.+|.. ..+++ |+.|++
T Consensus 236 ~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~i-liaTDV 313 (442)
T KOG0340|consen 236 DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARI-LIATDV 313 (442)
T ss_pred hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccE-EEEech
Confidence 3566778888888876 56789999999999999999999999999999999999999999999987 45666 678899
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCc-EEE
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE-VHI 1116 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRd-V~V 1116 (1992)
++.||++...+-||.||.|-.|-....+.||.-|-|..-. +.|
T Consensus 314 AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSi 357 (442)
T KOG0340|consen 314 ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISI 357 (442)
T ss_pred hhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEE
Confidence 9999999999999999999999999999999888887655 443
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=4.1e-08 Score=129.10 Aligned_cols=132 Identities=17% Similarity=0.296 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
..|..+|...+......|..|||||......+.|...|...|+++..|+|.....+++.+...|.. +. ++++|..+
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~-g~---VtIATnmA 498 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR-GA---VTIATNMA 498 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC-ce---EEEEeccc
Confidence 469999999999888899999999999999999999999999999999999875555555555543 22 57889999
Q ss_pred ccccCCc---cCC-----EEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 000160 1075 GVGINLV---GAD-----TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQ 1135 (1992)
Q Consensus 1075 G~GLNLT---~Ad-----tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~q 1135 (1992)
|.|+++. +.. +||.++.+-|.-.+.|+.||++|.|..-....| + +.|+.++.+-..
T Consensus 499 GRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~--~---sleD~l~~~f~~ 562 (796)
T PRK12906 499 GRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY--L---SLEDDLMRRFGS 562 (796)
T ss_pred cCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE--E---eccchHHHhhCc
Confidence 9999984 456 999999999999999999999999987665432 2 345666655433
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.02 E-value=1e-07 Score=125.98 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=111.7
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|+.+|..++.++...|..|||||......+.|...|..+|+++..|+|. ..+|.+.|..|.. ....| +++|..
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag-~~g~V-tIATNm 487 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG-RPGAV-TIATNM 487 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcC-CCceE-EEeccc
Confidence 3469999999999988899999999999999999999999999999999995 6699999999975 44444 788899
Q ss_pred cccccCCc--------------------------------------cCCEEEEecCCCChhhHHHHHHhhcccCCcCcEE
Q 000160 1074 GGVGINLV--------------------------------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVH 1115 (1992)
Q Consensus 1074 GG~GLNLT--------------------------------------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~ 1115 (1992)
+|.|+++. |.=+||.-..+=|--+|.|..||++|.|..-...
T Consensus 488 AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 488 AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSR 567 (830)
T ss_pred ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCcee
Confidence 99998863 3458999998999999999999999999877766
Q ss_pred EEEEEeCCCHHHHHHHHHH
Q 000160 1116 IYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1116 VYRLIse~TIEErIlkra~ 1134 (1992)
.|- |.|+.++.+-.
T Consensus 568 f~l-----SleD~l~~~f~ 581 (830)
T PRK12904 568 FYL-----SLEDDLMRIFG 581 (830)
T ss_pred EEE-----EcCcHHHHhhc
Confidence 543 56777776533
No 99
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.02 E-value=1.9e-09 Score=117.69 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC--CeEE
Q 000160 457 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA--FKIL 533 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~--lKVL 533 (1992)
|+|...+.-+. .+.+-|+...+|.|||...+..+....... ..+.+|||||+ .++.|-..++.+++.. .++.
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 78999988766 367789999999999999886555444433 44589999998 5888888999998864 7888
Q ss_pred EEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhh--hhccCccEEEEcCccccCCh--hhHHHHHHHhc---ccce
Q 000160 534 TYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNW--KSQRWQTLLNF---NSKR 606 (1992)
Q Consensus 534 ~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~--f~r~~W~~LILDEAH~IKN~--~Sq~~qaLl~L---~a~r 606 (1992)
.++|.......... |. .+..+|+|+|+..+...... ..-....+||+||+|.+-.. .......+..+ ...+
T Consensus 77 ~~~~~~~~~~~~~~-~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQRE-VL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHHHH-HH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccc-cc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 88876542211111 11 24678999999998765443 11234799999999998763 22233333333 2467
Q ss_pred EEEEeccCCCCChHH
Q 000160 607 RILLTGTPLQNDLME 621 (1992)
Q Consensus 607 RLLLTGTPLQNsL~E 621 (1992)
.+++||||- .++..
T Consensus 155 ~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLP-SNVEK 168 (169)
T ss_dssp EEEEESSST-HHHHH
T ss_pred EEEEeeCCC-hhHhh
Confidence 999999997 55543
No 100
>COG4889 Predicted helicase [General function prediction only]
Probab=99.02 E-value=3.7e-09 Score=133.41 Aligned_cols=169 Identities=21% Similarity=0.241 Sum_probs=111.1
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHH
Q 000160 442 QVRTKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWE 520 (1992)
Q Consensus 442 ~vkt~vP~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe 520 (1992)
.....+|.--...|||||+.+++-....+..+-.|=|-.-+|.|||.+++-+.-.++. ..+|.+||+ +|+.|--
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTl 223 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTL 223 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHH
Confidence 3334556556688999999999999998888888877788999999999998888876 478999998 7777754
Q ss_pred HHHHHHC-CCCeEEEEeCc--------------------hhHHH--HhhhccCCCCCceEEEEeehhhhhchh--hhhcc
Q 000160 521 TEFLKWC-PAFKILTYFGS--------------------AKERK--FKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRK 575 (1992)
Q Consensus 521 ~EfkKw~-P~lKVL~Y~Gs--------------------~keRk--~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~ 575 (1992)
+|...-. -.+........ ...+. ..+....+++..-||..||+.+..-.. ...--
T Consensus 224 rew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~ 303 (1518)
T COG4889 224 REWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLD 303 (1518)
T ss_pred HHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCC
Confidence 4432110 01222111111 11111 111122356677899999998866443 33445
Q ss_pred CccEEEEcCccccCCh------hhHHH--HHHHhcccceEEEEeccCC
Q 000160 576 KWKYLILDEAHLIKNW------KSQRW--QTLLNFNSKRRILLTGTPL 615 (1992)
Q Consensus 576 ~W~~LILDEAH~IKN~------~Sq~~--qaLl~L~a~rRLLLTGTPL 615 (1992)
.|++||+||||+--.- .|..+ ..-.++++.+||-+|+||=
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 7999999999985331 11111 1123457788999999984
No 101
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=98.97 E-value=8.7e-09 Score=125.55 Aligned_cols=128 Identities=16% Similarity=0.277 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
++..|..+|++.... .||+||+....+.+++...|++..+.+.-|+|..+...|-....+|...... +|++|.+++.
T Consensus 316 ~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVaAR 392 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVAAR 392 (543)
T ss_pred hHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc--eEEecchhhc
Confidence 466777788776554 8999999999999999999999999999999999999999999999874433 5889999999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHH
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK 1131 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlk 1131 (1992)
|++....|-||-||||-||.....|+||..|-|-+- +-+-|+++. |...+.
T Consensus 393 GlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G--~alL~l~p~--El~Flr 443 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG--KALLLLAPW--ELGFLR 443 (543)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc--eEEEEeChh--HHHHHH
Confidence 999999999999999999999999999999976544 344455553 444443
No 102
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=7.1e-07 Score=118.36 Aligned_cols=131 Identities=15% Similarity=0.233 Sum_probs=110.1
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
..|+.+|..++..+...|..|||||......+.|...|...|+++..|++ +..+|++.|-.|.. ....| +++|..+
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG-~~g~V-tIATNMA 656 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG-QKGAV-TIATNMA 656 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC-CCCeE-EEeccCc
Confidence 46999999999999899999999999999999999999999999999997 56799999999975 33444 7899999
Q ss_pred ccccCCccCC--------EEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000160 1075 GVGINLVGAD--------TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1075 G~GLNLT~Ad--------tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~ 1134 (1992)
|.|+++.-.. +||.++.+-+.-++.|++||++|.|..-.... |+ |.|+.++.+..
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fv---SleD~Lmr~f~ 719 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YV---SLEDELMRLFG 719 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--Ee---chhHHHHHhhC
Confidence 9999987333 45889999999999999999999998766533 22 45777776543
No 103
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.89 E-value=5.6e-08 Score=130.65 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=89.8
Q ss_pred CCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1012 GHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
+..||||..-...++.+...|.. .++.++.++|+++.++|+.++..|.. +..+| |++|..+..||++.+.++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rkV-lvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRKV-VLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeEE-EEecchHHhcccccCceEEEE
Confidence 56899999999999999999986 68889999999999999999999964 45555 799999999999999999999
Q ss_pred ecCC----CChhh-----------HHHHHHhhcccCCcCcEEEEEEEeCCCHH
Q 000160 1089 YDSD----WNPAM-----------DQQAQDRCHRIGQTREVHIYRLISESTIE 1126 (1992)
Q Consensus 1089 yD~d----WNPa~-----------d~QA~gRahRIGQTRdV~VYRLIse~TIE 1126 (1992)
++.. |+|.. -++++-|++|.|.+++=..|||+++...+
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAE 342 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHh
Confidence 6643 44431 13444455555555799999999987553
No 104
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.81 E-value=7.7e-08 Score=115.55 Aligned_cols=141 Identities=21% Similarity=0.280 Sum_probs=89.7
Q ss_pred cccchHHHHHHHHHHH-----hhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHH------------
Q 000160 993 FDCGKLQELAILLRKL-----KSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLM------------ 1055 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kL-----ks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lI------------ 1055 (1992)
+.|||+++|..||..+ ...+.++||.++-.+++|+||.+|...++.|-|++|..-.++....-
T Consensus 93 ~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~ 172 (297)
T PF11496_consen 93 YTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNN 172 (297)
T ss_dssp HT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-------------
T ss_pred HcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccc
Confidence 4689999999999999 77788999999999999999999999999999999976544333222
Q ss_pred HHHh--cCCCceEEEEecccccc----ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHH
Q 000160 1056 QRFN--TNPKIFLFILSTRSGGV----GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENI 1129 (1992)
Q Consensus 1056 erFN--~D~~ifVfLLSTrAGG~----GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErI 1129 (1992)
.... ....+.|+|++|.-... .++-...|.||-||+.+++....-..=|.+.-.+ +.+-|+|||..+|||--+
T Consensus 173 ~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~ 251 (297)
T PF11496_consen 173 SKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIE 251 (297)
T ss_dssp ---------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHH
T ss_pred cccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHH
Confidence 1111 12457777777654433 1334567899999999999887655555544333 899999999999999988
Q ss_pred HHHHH
Q 000160 1130 LKKAN 1134 (1992)
Q Consensus 1130 lkra~ 1134 (1992)
+....
T Consensus 252 L~~~~ 256 (297)
T PF11496_consen 252 LCFPK 256 (297)
T ss_dssp HHHTT
T ss_pred HHccC
Confidence 76533
No 105
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=98.80 E-value=1.7e-08 Score=123.69 Aligned_cols=106 Identities=18% Similarity=0.325 Sum_probs=91.3
Q ss_pred eEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCC
Q 000160 1014 RALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDW 1093 (1992)
Q Consensus 1014 KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dW 1093 (1992)
|.|||++...-..-|.-+|+..++.-+.|+.+|...+|-+.+++|...+. ++|+.|.++..||++++..|||+|.-|-
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~--~VLiaTDVAARGLDIp~V~HVIHYqVPr 542 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS--GVLIATDVAARGLDIPGVQHVIHYQVPR 542 (731)
T ss_pred ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC--eEEEeehhhhccCCCCCcceEEEeecCC
Confidence 88999999999999999999999999999999999999999999987544 5688999999999999999999999999
Q ss_pred ChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1094 NPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1094 NPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
.-.+...|-||.-|-+. +-|.|. |+.+.
T Consensus 543 tseiYVHRSGRTARA~~-~Gvsvm-l~~P~ 570 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANS-EGVSVM-LCGPQ 570 (731)
T ss_pred ccceeEecccccccccC-CCeEEE-EeChH
Confidence 98888777777777653 335553 44443
No 106
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.79 E-value=1.3e-07 Score=116.54 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=93.9
Q ss_pred eEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE----e
Q 000160 1014 RALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF----Y 1089 (1992)
Q Consensus 1014 KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf----y 1089 (1992)
.+||||...+-...|..+|...|++..-++++.+..+|+.+=..|.+ ..+-| +++|.+.|.|+++. |+.||| +
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~-VVTTAAL~AGVDFP-ASQVIFEsLaM 518 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAA-VVTTAALAAGVDFP-ASQVIFESLAM 518 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcce-EeehhhhhcCCCCc-hHHHHHHHHHc
Confidence 78999999999999999999999999999999999999999999975 66766 68999999999997 477776 3
Q ss_pred cC-CCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1090 DS-DWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1090 D~-dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
-. |.+|.-.+|-.||++|.|=.-.-.||-++-.+
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 33 56999999999999999988777888888654
No 107
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.1e-08 Score=114.64 Aligned_cols=123 Identities=23% Similarity=0.338 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..|-..|-- ..++||++-.+..|+|..-|...++++..++|.++.++|.++|..|.. +.-+| |++|..-+.
T Consensus 253 KfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~Srv-LitTDVwaR 328 (400)
T KOG0328|consen 253 KFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRV-LITTDVWAR 328 (400)
T ss_pred hHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceE-EEEechhhc
Confidence 88888888877733 489999999999999999999999999999999999999999999987 55666 689999999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCH
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1125 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1125 (1992)
||+.+..+.||.||.|-|+.....++||.+|.|.+- .+..||...-+
T Consensus 329 GiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 329 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred cCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 999999999999999999999999999999999753 44567765533
No 108
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=4.7e-06 Score=110.56 Aligned_cols=130 Identities=16% Similarity=0.274 Sum_probs=104.1
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
..|..++..-+..+...|.-|||-|.....-..|...|...|+.+..|+.... ++-..+|.+ .++.-.+.++|..+
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~---AG~~g~VTIATNmA 626 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG---AGKLGAVTVATNMA 626 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh---cCCCCcEEEeeccc
Confidence 57999999999999999999999999999999999999999999999987643 333344443 23444457889999
Q ss_pred ccccCCc--------cCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000160 1075 GVGINLV--------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKA 1133 (1992)
Q Consensus 1075 G~GLNLT--------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra 1133 (1992)
|.|.++. |.=+||.-..+-|.-+|.|..||++|.|..-....|- |.|+.++.+-
T Consensus 627 GRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~f 688 (970)
T PRK12899 627 GRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRLF 688 (970)
T ss_pred cCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHHh
Confidence 9997763 3458999999999999999999999999876655432 5677777653
No 109
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.78 E-value=5.3e-07 Score=120.68 Aligned_cols=158 Identities=23% Similarity=0.341 Sum_probs=110.9
Q ss_pred CCChHHHHHHHHHHHHHHcc--CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH-HHHHHHHCCC
Q 000160 453 FPLREYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW-ETEFLKWCPA 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~--~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW-e~EfkKw~P~ 529 (1992)
+.--+-|..+++-...=.++ .+-=+||-++|.|||=+++-..-...+ .| +-+.|+|||.++.+- -.-|+.-+-+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-~G--KQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-DG--KQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-CC--CeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 45678999999976643333 345589999999999988743322222 23 568999999987763 3345433333
Q ss_pred ----CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccc
Q 000160 530 ----FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 605 (1992)
Q Consensus 530 ----lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~ 605 (1992)
..++.-+-+.++.+....+ .+.+..||||-|+.++..+..+ .+-.+||+||=|++. =+.-..|..|++.
T Consensus 670 fPV~I~~LSRF~s~kE~~~il~~-la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFG---Vk~KEkLK~Lr~~ 742 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEILKG-LAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFG---VKHKEKLKELRAN 742 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHHHH-HhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcC---ccHHHHHHHHhcc
Confidence 3445556677777766654 4568999999999999888553 345899999999874 3444567777654
Q ss_pred -eEEEEeccCCCCChH
Q 000160 606 -RRILLTGTPLQNDLM 620 (1992)
Q Consensus 606 -rRLLLTGTPLQNsL~ 620 (1992)
..|-|||||+..+|.
T Consensus 743 VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 743 VDVLTLSATPIPRTLN 758 (1139)
T ss_pred CcEEEeeCCCCcchHH
Confidence 789999999987653
No 110
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=98.70 E-value=7.3e-08 Score=117.87 Aligned_cols=143 Identities=21% Similarity=0.273 Sum_probs=115.9
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
.+.|...|..+|... ....+|||.+..+..|.|...|...||.+++|+|+-+.+||..++..|.. +..-| |+.|.+
T Consensus 501 ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~-~t~dI-lVaTDv 576 (673)
T KOG0333|consen 501 EDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFRE-GTGDI-LVATDV 576 (673)
T ss_pred chHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHh-cCCCE-EEEecc
Confidence 467899999999876 46799999999999999999999999999999999999999999999987 23333 567899
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 1146 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~ 1146 (1992)
+|.||++...++||.||..-+-.+...+|||.+|-|+.-.+.- |+++.--+ -.| .-|+.|...+..+
T Consensus 577 AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS--flt~~dt~-v~y---dLkq~l~es~~s~ 643 (673)
T KOG0333|consen 577 AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS--FLTPADTA-VFY---DLKQALRESVKSH 643 (673)
T ss_pred cccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE--EeccchhH-HHH---HHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999998765433 44443211 122 2355666555543
No 111
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.64 E-value=3.8e-05 Score=91.03 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=109.2
Q ss_pred CCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC
Q 000160 451 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA 529 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~ 529 (1992)
.+|+|-++|..+-+-|+....+..--|+-.-+|.|||=+.-..|...... .|.+.|+.|- -|+..-..-|+.-+++
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhcc
Confidence 46999999999999999999888899999999999999888777765443 3578999996 6888888888888888
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCCh-hhHHHHHHHhc--ccce
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNW-KSQRWQTLLNF--NSKR 606 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~-~Sq~~qaLl~L--~a~r 606 (1992)
..|...||.....- ...-||-||+++++- ...|++||+||...+-=. +-.+..++..- .-..
T Consensus 171 ~~I~~Lyg~S~~~f---------r~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 171 CDIDLLYGDSDSYF---------RAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred CCeeeEecCCchhc---------cccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 88888888765431 133477777777642 234899999999876322 22233444333 2346
Q ss_pred EEEEeccCC
Q 000160 607 RILLTGTPL 615 (1992)
Q Consensus 607 RLLLTGTPL 615 (1992)
++.|||||-
T Consensus 236 ~IylTATp~ 244 (441)
T COG4098 236 TIYLTATPT 244 (441)
T ss_pred eEEEecCCh
Confidence 899999986
No 112
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.63 E-value=1.2e-06 Score=120.31 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=83.6
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCc---EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYT---YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~---y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
..+||||..-...++.+...|...|+. ++-|+|.++.++|+.+++.+ +..+ +|++|..+..||++.+.++||-
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rk-IIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRR-IVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCee-EEEeccHHhhccccCcceEEEE
Confidence 458999999999999999999988875 56789999999999887653 4444 4799999999999999999998
Q ss_pred ec---------------CCCCh---hhHHHHHHhhcccCCcCcEEEEEEEeCCCH
Q 000160 1089 YD---------------SDWNP---AMDQQAQDRCHRIGQTREVHIYRLISESTI 1125 (1992)
Q Consensus 1089 yD---------------~dWNP---a~d~QA~gRahRIGQTRdV~VYRLIse~TI 1125 (1992)
++ .+-.| +.-.||.|||+|. ++=..|||+++...
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 75 22233 3345555555555 68889999987543
No 113
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.61 E-value=5.5e-06 Score=108.58 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=101.5
Q ss_pred HHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcC-------CCCcEEEEecC-CcHH----HHHHHHHHHCCCCeEEEE
Q 000160 468 TMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-------IWGPHLIVVPT-SVML----NWETEFLKWCPAFKILTY 535 (1992)
Q Consensus 468 slye~~lgGILADEMGLGKTIQtIALLa~La~ekg-------~~GP~LIVVPt-SLL~----NWe~EfkKw~P~lKVL~Y 535 (1992)
..|..+.|.|+|-.+|.|||..+.-.|.++..++. ..-+++-|+|. +|.. +|-.-|.-| +++|.-+
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~EL 198 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVREL 198 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEe
Confidence 35788999999999999999988877777665421 12357889997 3433 343333322 7899999
Q ss_pred eCchhHHHHhhhccCCCCCceEEEEeehhhh---h----chhhhhccCccEEEEcCccccCChh-----hHHHHHHHhc-
Q 000160 536 FGSAKERKFKRQGWLKPNSFHVCITTYRLII---Q----DSKVFKRKKWKYLILDEAHLIKNWK-----SQRWQTLLNF- 602 (1992)
Q Consensus 536 ~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~---q----D~~~f~r~~W~~LILDEAH~IKN~~-----Sq~~qaLl~L- 602 (1992)
.|...-.+..- ...+|+|||.+.+- + |...|.. ..+|||||.|.|.... +-.+++++..
T Consensus 199 TGD~ql~~tei------~~tqiiVTTPEKwDvvTRk~~~d~~l~~~--V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ve 270 (1230)
T KOG0952|consen 199 TGDTQLTKTEI------ADTQIIVTTPEKWDVVTRKSVGDSALFSL--VRLVIIDEVHLLHDDRGPVLETIVARTLRLVE 270 (1230)
T ss_pred cCcchhhHHHH------HhcCEEEecccceeeeeeeeccchhhhhh--eeeEEeeeehhhcCcccchHHHHHHHHHHHHH
Confidence 99876544332 25678888876541 1 2233333 5899999999998754 4445555333
Q ss_pred ---ccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHH
Q 000160 603 ---NSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFK 641 (1992)
Q Consensus 603 ---~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ 641 (1992)
..-|.++||||- . | +-.+-+||..++......|.
T Consensus 271 ssqs~IRivgLSATl-P-N---~eDvA~fL~vn~~~glfsFd 307 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATL-P-N---YEDVARFLRVNPYAGLFSFD 307 (1230)
T ss_pred hhhhheEEEEeeccC-C-C---HHHHHHHhcCCCccceeeec
Confidence 445789999993 2 2 33455677655443333333
No 114
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.61 E-value=1.5e-06 Score=114.50 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=102.0
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
..|+..|..||..... ..++|||++-..-+|.|-.-|...||.+..|+|..+..+|...++.|.+ +. ..+|+.|...
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~-~~-~~LLvaTsvv 673 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN-GV-VNLLVATSVV 673 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc-cC-ceEEEehhhh
Confidence 4588888888887766 5699999999999999999999999999999999999999999999986 33 3467888999
Q ss_pred ccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeC
Q 000160 1075 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1122 (1992)
Q Consensus 1075 G~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1122 (1992)
..||+...-..||+||.+=--.....|.||..|-|.+- .-|.||..
T Consensus 674 arGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 674 ARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999999998644445556666666666554 66777877
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.61 E-value=1e-06 Score=116.29 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=108.9
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
..|++..|...|+.+...|.+||||+....+.+.|..+|..+|+.+..++|.++..+|.+++..|.. +.+.| |++|..
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~V-LV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDV-LVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceE-EEEcCh
Confidence 3678889999999888999999999999999999999999999999999999999999999999975 56666 678899
Q ss_pred cccccCCccCCEEEEecC-----CCChhhHHHHHHhhcccCCcCcEEEEEEEeCCC
Q 000160 1074 GGVGINLVGADTVIFYDS-----DWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1124 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~-----dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1124 (1992)
.+.|+++..++.||++|. +=+.....|++||+.|.+ . -.|+-|+...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCC
Confidence 999999999999999994 447788899999999973 2 23555665554
No 116
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.59 E-value=2.7e-05 Score=96.57 Aligned_cols=214 Identities=21% Similarity=0.232 Sum_probs=146.6
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
.|-+.-|..-++...+.|.||||=|=-.+|..-|..||..+|++..+++.....-+|..++..... +.+-| |+...-.
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~~Dv-LVGINLL 506 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDV-LVGINLL 506 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CCccE-EEeehhh
Confidence 345555555666666789999999999999999999999999999999999999999999999975 55555 6778899
Q ss_pred ccccCCccCCEEEEecCC-----CChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000160 1075 GVGINLVGADTVIFYDSD-----WNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY 1149 (1992)
Q Consensus 1075 G~GLNLT~AdtVIfyD~d-----WNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f 1149 (1992)
-+||+|..+.-|.++|-| -+-....|-+||+-|--. -.|..|-=...+++.+-|-+. +++|.+.-.--..-+.
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET-~RRR~iQ~~yN~~hgI 584 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDET-ERRREIQMAYNEEHGI 584 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 999999999999999987 467889999999999432 236666555566677777655 3344444333444556
Q ss_pred CccccCcCChhhhhcCCCCCchhhhhHHHhhhCCCCccCChhhHHHHHHhhhchHHHHHHHHHhhHHhhh
Q 000160 1150 NTEFFKKLDPMELFSGHRTLPMKTMQKEKAINNGNEVSLSNADVEAALKCVEDEADYMALKRAEQEEAVD 1219 (1992)
Q Consensus 1150 ~~~~fk~~d~~eLF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~aede~d~~a~~~~~~e~~~~ 1219 (1992)
++...++ .+.++..+..... ............++..++++.++..|.+ ..+|++..+=|.++.
T Consensus 585 tP~ti~K-~i~d~l~~~~~~~-----~~~~~~~~~~~~~~~~e~~~~I~~Le~~-M~~aA~~l~FE~Aa~ 647 (663)
T COG0556 585 TPQTIKK-KIRDILDGEYEED-----EYKAKIEKKASKMSKKELEKLIKKLEKE-MKEAAKNLEFEEAAR 647 (663)
T ss_pred Cchhhhh-hhhHhhhhhhhhh-----hhhhhcccccccCCHHHHHHHHHHHHHH-HHHHHHhCCHHHHHH
Confidence 6655443 2444443321110 0000001112346777788887777643 556666665555543
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.58 E-value=6e-06 Score=107.24 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=106.5
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|+.++..-+.++.+.|.-|||.|.....-..|...|...|+++..|..... ++-..+|.+ .++...+.++|..
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~---AG~~gaVTIATNM 484 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAE---AGKYGAVTVSTQM 484 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHh---cCCCCcEEEEecC
Confidence 356999999999999999999999999999999999999999999999987644 333445544 2444455788999
Q ss_pred cccccCCc---------------cCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000160 1074 GGVGINLV---------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1074 GG~GLNLT---------------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~ 1134 (1992)
+|.|.++. |.=+||--..+=|--+|.|..|||+|.|..-....|- |.|+.++.+-.
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f~ 555 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAANL 555 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhcC
Confidence 99998764 3458999888899999999999999999876665543 56777776643
No 118
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.55 E-value=6.2e-06 Score=110.91 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=97.8
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc---CCCceEEEEeccccccccCCccCCEE
Q 000160 1010 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT---NPKIFLFILSTRSGGVGINLVGADTV 1086 (1992)
Q Consensus 1010 s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~---D~~ifVfLLSTrAGG~GLNLT~AdtV 1086 (1992)
..|.||+|-++-+.-..-+...|+..+..++.|++......|.+.++.... .... .++++|.+--+|+++. .|.+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~-~IvVaTQVIEagvDid-fd~m 515 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEG-FIVVATQVIEAGVDID-FDVL 515 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCC-eEEEEeeEEEEEeccc-cCee
Confidence 357899999999999999999999888889999999999999999886653 2333 3478999999999998 5665
Q ss_pred EEecCCCCh-hhHHHHHHhhcccC--CcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000160 1087 IFYDSDWNP-AMDQQAQDRCHRIG--QTREVHIYRLISESTIEENILKKANQKR 1137 (1992)
Q Consensus 1087 IfyD~dWNP-a~d~QA~gRahRIG--QTRdV~VYRLIse~TIEErIlkra~qKr 1137 (1992)
|- |+ .| ....||.|||+|-| ....+.||...-......+.+.....+.
T Consensus 516 IT-e~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 566 (733)
T COG1203 516 IT-EL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKL 566 (733)
T ss_pred ee-cC--CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhh
Confidence 53 32 34 45789999999999 5666888888888888877776644333
No 119
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.54 E-value=1.7e-05 Score=105.46 Aligned_cols=131 Identities=15% Similarity=0.240 Sum_probs=103.8
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|..++..-+..+...|.-|||-|.....-..|..+|...|+++-.|.-... ++-..++.+ .++.-.+.++|..
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~---AG~~GaVTIATNM 506 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ---AGRPGALTIATNM 506 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc---CCCCCcEEEeccC
Confidence 457999999999999999999999999999999999999999999988877543 333344443 2334445788999
Q ss_pred cccccCCc-------------------------------------cCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEE
Q 000160 1074 GGVGINLV-------------------------------------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1116 (1992)
Q Consensus 1074 GG~GLNLT-------------------------------------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1116 (1992)
+|.|.++. |.=+||.-..+=|--+|.|..|||+|.|..--...
T Consensus 507 AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 99998763 34589999999999999999999999998766555
Q ss_pred EEEEeCCCHHHHHHHHH
Q 000160 1117 YRLISESTIEENILKKA 1133 (1992)
Q Consensus 1117 YRLIse~TIEErIlkra 1133 (1992)
|- |.|+.++.+-
T Consensus 587 ~l-----SlED~Lmr~f 598 (913)
T PRK13103 587 YL-----SLEDSLMRIF 598 (913)
T ss_pred EE-----EcCcHHHHhh
Confidence 43 3466776653
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.51 E-value=1.2e-06 Score=116.17 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=108.2
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
.+++..|...|+.+...|.+||||+.....++.|..+|..+|+++..++|.++..+|..++..|.. +.+.| |++|...
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~v-lV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDV-LVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCceE-EEEeCHH
Confidence 577888999999888899999999999999999999999999999999999999999999999975 56665 6788999
Q ss_pred ccccCCccCCEEEEecCC-----CChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1075 GVGINLVGADTVIFYDSD-----WNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1075 G~GLNLT~AdtVIfyD~d-----WNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
+.|+++..++.||++|.+ -++....|++||++| +. .-.++.|+...
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR-~~--~G~~i~~~~~~ 557 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV--NGKVILYADKI 557 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccC-CC--CCEEEEEecCC
Confidence 999999999999999974 488889999999999 43 33456666643
No 121
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.51 E-value=2.2e-06 Score=101.90 Aligned_cols=259 Identities=18% Similarity=0.186 Sum_probs=155.6
Q ss_pred hHHHHHHHhhcCCCCCCccccccccccCCCC--CCCCChHHHHHHHHHHHHHHcc------CccEEEEcCCCChHHHHHH
Q 000160 420 RIADAAAAARSAQPTGITFSTTQVRTKFPFL--LKFPLREYQHIGLDWLVTMYEK------RLNGILADEMGLGKTIMTI 491 (1992)
Q Consensus 420 ~i~~~aa~a~s~qP~G~t~~tt~vkt~vP~l--Lk~~LRpYQ~~GL~WLvslye~------~lgGILADEMGLGKTIQtI 491 (1992)
.+.+.++.+ +..|+..+.. ..+|.. -.+.|-.-|+++|-+..+.++. +.|-+|+|.+|.||..|.-
T Consensus 7 ~vvEs~~la-sv~~P~~~y~-----~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iA 80 (303)
T PF13872_consen 7 PVVESASLA-SVAPPDPTYR-----LHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIA 80 (303)
T ss_pred hHhhhhhhh-cCCCCCCCcc-----cCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhH
Confidence 455555554 4555544332 245652 3688999999999998887774 5677999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHC-CCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh
Q 000160 492 AMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWC-PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK 570 (1992)
Q Consensus 492 ALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~-P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~ 570 (1992)
++|.+... +|..+++.|-+...|..-=++.+..-- ..+.+.....-+ . +-...-...|+.+||..++....
T Consensus 81 giI~~n~l-~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~------~-~~~~~~~~GvlF~TYs~L~~~~~ 152 (303)
T PF13872_consen 81 GIILENWL-RGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFK------Y-GDIIRLKEGVLFSTYSTLISESQ 152 (303)
T ss_pred HHHHHHHH-cCCCceEEEECChhhhhHHHHHHHHhCCCcccceechhhc------c-CcCCCCCCCccchhHHHHHhHHh
Confidence 99987755 455555555556667776666665432 112222221111 0 00111245699999999987742
Q ss_pred h-------hhc-cCc------cEEEEcCccccCChhh------HHHHHHHhcc----cceEEEEeccCCCCChHHHHHHH
Q 000160 571 V-------FKR-KKW------KYLILDEAHLIKNWKS------QRWQTLLNFN----SKRRILLTGTPLQNDLMELWSLM 626 (1992)
Q Consensus 571 ~-------f~r-~~W------~~LILDEAH~IKN~~S------q~~qaLl~L~----a~rRLLLTGTPLQNsL~ELwSLL 626 (1992)
. |.. ..| .+||+||||+.||..+ +...+++.|+ .-|.+-.|+|.... +..| ++|
T Consensus 153 ~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nm-aYm 230 (303)
T PF13872_consen 153 SGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNM-AYM 230 (303)
T ss_pred ccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Ccee-eee
Confidence 1 111 124 4799999999999755 6667776663 34788999998743 2222 122
Q ss_pred HHh---CC-CCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhhcCCCceeEEEEecCCHHH
Q 000160 627 HFL---MP-HIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQ 702 (1992)
Q Consensus 627 ~FL---~P-~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVekqLP~K~E~VV~c~LS~~Q 702 (1992)
.=| .+ ..|.+..+|.+.+.+- ...-.+++.. .-..+..+++|... +-.-...++.++|++.|
T Consensus 231 ~RLGLWG~gtpf~~~~~f~~a~~~g--------Gv~amE~vA~-dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~ 296 (303)
T PF13872_consen 231 SRLGLWGPGTPFPDFDDFLEAMEKG--------GVGAMEMVAM-DLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQ 296 (303)
T ss_pred eeccccCCCCCCCCHHHHHHHHHhc--------CchHHHHHHH-HHHhcchheeeecc-----cCCceEEEEEecCCHHH
Confidence 212 11 2466777777655321 1111122211 11223445555432 33345778899999999
Q ss_pred HHHHHH
Q 000160 703 RNLYED 708 (1992)
Q Consensus 703 r~LYdd 708 (1992)
..+|+.
T Consensus 297 ~~~Yd~ 302 (303)
T PF13872_consen 297 IKMYDA 302 (303)
T ss_pred HHHhcC
Confidence 999985
No 122
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.43 E-value=8.6e-07 Score=105.25 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+++|..|---+ .-| ..|||++-..+..+|...|...||.+..|+|.+..++|.++|++|.. +.-.| |++|..+.
T Consensus 316 ~K~~~l~~lyg~~-tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kV-LitTnV~A 391 (477)
T KOG0332|consen 316 DKYQALVNLYGLL-TIG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKV-LITTNVCA 391 (477)
T ss_pred hHHHHHHHHHhhh-hhh-heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceE-EEEechhh
Confidence 5888888854332 323 77999999999999999999999999999999999999999999985 56666 68899999
Q ss_pred cccCCccCCEEEEecCCC------ChhhHHHHHHhhcccCCcCcEEEEEEEeCCCH
Q 000160 1076 VGINLVGADTVIFYDSDW------NPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1125 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dW------NPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1125 (1992)
.||+....+.||.||.+- .|.....|+||.+|.|.+- +-|--+-.+++.
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG-~a~n~v~~~~s~ 446 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG-LAINLVDDKDSM 446 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc-eEEEeecccCcH
Confidence 999999999999999874 4677899999999999643 333333344554
No 123
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.40 E-value=1.1e-06 Score=104.89 Aligned_cols=120 Identities=21% Similarity=0.333 Sum_probs=107.8
Q ss_pred cccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEe
Q 000160 991 IQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILS 1070 (1992)
Q Consensus 991 iq~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLS 1070 (1992)
+..++-|+..+..++..+ +...|||||+...-|.|-|..-|...||..--|+|.-...+|+.+++.|.. +.+++ |+.
T Consensus 445 v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrI-Lva 521 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRI-LVA 521 (629)
T ss_pred ecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEE-EEE
Confidence 445778887777777665 556799999999999999999999999999999999999999999999986 77877 678
Q ss_pred ccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCc
Q 000160 1071 TRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1113 (1992)
Q Consensus 1071 TrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRd 1113 (1992)
|..++.||++....||+.||-+-|-.....++||.+|-|.|-.
T Consensus 522 TDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 522 TDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred echhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 8999999999999999999999999999999999999998754
No 124
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.38 E-value=9.5e-06 Score=109.48 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=96.5
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEec
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD 1090 (1992)
.+.-.||||....+.+.+..+|...|++..-++.++...+|+.+-..|..+ +++| |+-|=|.|-|||-...--||+|-
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~V-ivATVAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KIRV-IVATVAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CCeE-EEEEeeccCCCCCCceeEEEECC
Confidence 355789999999999999999999999999999999999999999999985 4776 66778999999999999999999
Q ss_pred CCCChhhHHHHHHhhcccCCcCcEEEEE
Q 000160 1091 SDWNPAMDQQAQDRCHRIGQTREVHIYR 1118 (1992)
Q Consensus 1091 ~dWNPa~d~QA~gRahRIGQTRdV~VYR 1118 (1992)
.+=+---.-|..||++|-|+-..++.|.
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEec
Confidence 9988888899999999999998877765
No 125
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.33 E-value=9.9e-07 Score=100.97 Aligned_cols=74 Identities=20% Similarity=0.394 Sum_probs=58.7
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
+++|+++||++|..+|+.||+ ||..|+..+ |..|.++|||+||..++.-.. +.+
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~----------g~gRT~KQCReRW~N~L~P~I-------------~kg-- 79 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRA----------GLLRCGKSCRLRWMNYLRPSV-------------KRG-- 79 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhh----------hcCCCcchHHHHHHHhhchhc-------------ccC--
Confidence 789999999999999999997 799999854 245999999999999984321 222
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQEDN 1692 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~~~~ 1692 (1992)
.-|++.-+.||..+....++
T Consensus 80 ----pWT~EED~lLlel~~~~GnK 99 (249)
T PLN03212 80 ----GITSDEEDLILRLHRLLGNR 99 (249)
T ss_pred ----CCChHHHHHHHHHHHhcccc
Confidence 46777788888877665544
No 126
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.27 E-value=4.5e-06 Score=99.03 Aligned_cols=131 Identities=21% Similarity=0.277 Sum_probs=110.1
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
-.|+-+|.+.|++ ..-.||||+.-..-.|-|..||-..|+..+-|+|+...++|...++.|..+. --| |+.|..+
T Consensus 407 EaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gk-KDV-LVATDVA 481 (610)
T KOG0341|consen 407 EAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGK-KDV-LVATDVA 481 (610)
T ss_pred hhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCC-Cce-EEEecch
Confidence 3678788888765 4669999999999999999999999999999999999999999999998743 334 6889999
Q ss_pred ccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1075 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1075 G~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
+-||++++..|||.||.+-.--....++||.+|-|.|--. ..||-+++-|.-++..
T Consensus 482 SKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA--TTfINK~~~esvLlDL 537 (610)
T KOG0341|consen 482 SKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA--TTFINKNQEESVLLDL 537 (610)
T ss_pred hccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee--eeeecccchHHHHHHH
Confidence 9999999999999999987777788888888888876543 3477777766666544
No 127
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.25 E-value=9.9e-07 Score=103.40 Aligned_cols=82 Identities=15% Similarity=0.293 Sum_probs=66.1
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
+|||+++||.+|..+|..||+ ||..|+.-+ |-.|.+++||.||-+++.-..- .|
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~----------gl~R~GKSCRlRW~NyLrP~ik-------------rg-- 63 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLA----------GLRRCGKSCRLRWTNYLRPDLK-------------RG-- 63 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhc----------CCCccchHHHHHhhcccCCCcc-------------CC--
Confidence 699999999999999999999 799999965 3369999999999988743221 33
Q ss_pred ceeEeechHHHHHHHHHHHhccchHHHHHHHH
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQEDNELLLQKHF 1700 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1700 (1992)
..|+++.+.|+.+-+.+-|+--+.-+|+
T Consensus 64 ----~fT~eEe~~Ii~lH~~~GNrWs~IA~~L 91 (238)
T KOG0048|consen 64 ----NFSDEEEDLIIKLHALLGNRWSLIAGRL 91 (238)
T ss_pred ----CCCHHHHHHHHHHHHHHCcHHHHHHhhC
Confidence 4799999999998777777655555554
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.19 E-value=0.00031 Score=92.94 Aligned_cols=134 Identities=15% Similarity=0.214 Sum_probs=107.0
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000160 993 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1072 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTr 1072 (1992)
....|+.++..-+.++...|.-|||.|.....-..|...|...|+.+-.|+.... +|.+.|=. ..++.-.+.++|.
T Consensus 407 t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG~~GaVTIATN 482 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAGQKGAITIATN 482 (925)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCCCCCeEEEecc
Confidence 3458999999999999999999999999999999999999999999999988643 34433332 2344455578899
Q ss_pred ccccccCCccCC--------EEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 000160 1073 SGGVGINLVGAD--------TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQ 1135 (1992)
Q Consensus 1073 AGG~GLNLT~Ad--------tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~q 1135 (1992)
.+|.|.++.-.. +||....+=|--+|.|..||++|.|..-....|- |+|+.++.+-..
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r~f~~ 548 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFRRFSN 548 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHHHhCC
Confidence 999998875333 9999999999999999999999999877665543 567777765443
No 129
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.18 E-value=1.8e-06 Score=76.36 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=40.5
Q ss_pred CCCCChhhhHHHHHHHHhcCCC-hhHHHHHhhccccCccccccccCchhhHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPN-WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1646 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~n-w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1646 (1992)
+++||++||.+|..+|..||.+ |..|+..| + ..|++.+|+.||..|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~---~-------~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRM---P-------GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHH---S-------SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHc---C-------CCCCHHHHHHHHHhhC
Confidence 3689999999999999999997 99999988 2 3599999999999873
No 130
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.16 E-value=9.7e-06 Score=101.72 Aligned_cols=147 Identities=23% Similarity=0.277 Sum_probs=115.7
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHH-HHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFI-SLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1072 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L-~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTr 1072 (1992)
.-||+-++..++..... -.+|||.|...-..-|...| .+-++....++|.-+..+|...|++|.. +.|.| |+.|.
T Consensus 371 e~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~Iwv-LicTd 446 (593)
T KOG0344|consen 371 EKGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWV-LICTD 446 (593)
T ss_pred chhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeE-EEehh
Confidence 35788888888876533 47999999999999999999 8999999999999999999999999986 88988 57789
Q ss_pred ccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000160 1073 SGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTE 1152 (1992)
Q Consensus 1073 AGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~~ 1152 (1992)
..+.||++.+++.||.||.+=.-.....++||.+|-|+. -+.|.|.+.. .+ ..=+.+.+...++|.-.++
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~--g~Aitfytd~----d~----~~ir~iae~~~~sG~evpe 516 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRS--GKAITFYTDQ----DM----PRIRSIAEVMEQSGCEVPE 516 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCC--cceEEEeccc----cc----hhhhhHHHHHHHcCCcchH
Confidence 999999999999999999877777777778888888764 4455555551 11 1224556666666665555
Q ss_pred cc
Q 000160 1153 FF 1154 (1992)
Q Consensus 1153 ~f 1154 (1992)
+.
T Consensus 517 ~~ 518 (593)
T KOG0344|consen 517 KI 518 (593)
T ss_pred HH
Confidence 53
No 131
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.12 E-value=3.9e-06 Score=97.86 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=102.7
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
+-|+--|-.|+.+|.- ..+|||++.+....+|..-+...||.+..++..|..+.|......|.+ +.|+. |+.|+-.
T Consensus 307 ~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crn-LVctDL~ 382 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRN-LVCTDLF 382 (459)
T ss_pred hhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccce-eeehhhh
Confidence 4588888888888854 378999999999999999999999999999999999999999999985 78888 4667899
Q ss_pred ccccCCccCCEEEEecCCCChhhHHHHHHhhcccCC
Q 000160 1075 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQ 1110 (1992)
Q Consensus 1075 G~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQ 1110 (1992)
-.||++++.|.||.||-+-|+-....++||.+|.|-
T Consensus 383 TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGh 418 (459)
T KOG0326|consen 383 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH 418 (459)
T ss_pred hcccccceeeEEEecCCCCCHHHHHHHccCCccCCC
Confidence 999999999999999999999999999999999995
No 132
>PLN03091 hypothetical protein; Provisional
Probab=98.09 E-value=4.1e-06 Score=102.20 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=62.7
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
+++|+++||++|..+|+.||. ||..|+..+ |..|.++|||+||..++.-.. ..|
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~----------g~gRT~KQCRERW~NyLdP~I-------------kKg-- 68 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQA----------GLQRCGKSCRLRWINYLRPDL-------------KRG-- 68 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhh----------ccCcCcchHhHHHHhccCCcc-------------cCC--
Confidence 689999999999999999998 799999754 345999999999998873211 222
Q ss_pred ceeEeechHHHHHHHHHHHhccchHHHHHHH
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQEDNELLLQKH 1699 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1699 (1992)
.-|.+.-+.||..+..+..+=-.+.++
T Consensus 69 ----pWT~EED~lLLeL~k~~GnKWskIAk~ 95 (459)
T PLN03091 69 ----TFSQQEENLIIELHAVLGNRWSQIAAQ 95 (459)
T ss_pred ----CCCHHHHHHHHHHHHHhCcchHHHHHh
Confidence 478888899999888776554444443
No 133
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.2e-05 Score=96.84 Aligned_cols=128 Identities=24% Similarity=0.334 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..+.+ .-...+||++-.+-++.|...|..+|++..-++|.+...+|..++..|+. +..+| |++|.-.+.
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrv-lIttdl~ar 325 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRV-LITTDLLAR 325 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceE-Eeecccccc
Confidence 8888888887 34578999999999999999999999999999999999999999999987 56777 678889999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~ 1134 (1992)
||+++..+-||.||.|=|+.....++||.+|.|. .-.+..+++++ ++++++...
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~gr--kg~~in~v~~~--d~~~lk~ie 379 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGR--KGVAINFVTEE--DVRDLKDIE 379 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCC--CceeeeeehHh--hHHHHHhHH
Confidence 9999999999999999999999999999999995 44455677776 446665533
No 134
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.06 E-value=2.8e-06 Score=78.38 Aligned_cols=43 Identities=35% Similarity=0.875 Sum_probs=36.9
Q ss_pred CChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHH
Q 000160 1593 WLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1646 (1992)
Q Consensus 1593 w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1646 (1992)
||++||++|..+|..||.+|..||..| | +|+|.+|+.||+..+
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~----------~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL-G----------NRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS-T----------TS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH-C----------cCCHHHHHHHHHHHC
Confidence 999999999999999999999999987 1 699999999999943
No 135
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.06 E-value=3.5e-06 Score=73.17 Aligned_cols=47 Identities=32% Similarity=0.703 Sum_probs=42.7
Q ss_pred CCCCChhhhHHHHHHHHhcC-CChhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYG-PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g-~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
+++|+++||.+|..+|+.|| .+|..|+..| + .|++.+|+.||..++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~---~--------~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKEL---P--------GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc---C--------CCCHHHHHHHHHHHcC
Confidence 36899999999999999999 8999999988 2 6999999999998763
No 136
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.06 E-value=3.7e-05 Score=103.30 Aligned_cols=140 Identities=20% Similarity=0.243 Sum_probs=93.4
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHH---------HHHHHCCC--CeEEEEeCchhH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WET---------EFLKWCPA--FKILTYFGSAKE 541 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N-We~---------EfkKw~P~--lKVL~Y~Gs~ke 541 (1992)
.|--+..++|.|||.+++.+|.+|....| |..+|||||+.-+.. ... .|+..+++ +.+.+|....+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 46678999999999999999999977655 578999999954433 322 23333333 555666544311
Q ss_pred HHHhhh-------ccC-----CCCCceEEEEeehhhhhchh------hh----hccCc-------cEEEEcCccccCChh
Q 000160 542 RKFKRQ-------GWL-----KPNSFHVCITTYRLIIQDSK------VF----KRKKW-------KYLILDEAHLIKNWK 592 (1992)
Q Consensus 542 Rk~kr~-------gw~-----k~~~fdVVITSYe~l~qD~~------~f----~r~~W-------~~LILDEAH~IKN~~ 592 (1992)
+..|. .+. ..+..+|+|+|-+.+-.+.. .+ ....| -.||+||+|++.. .
T Consensus 139 -k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~ 216 (986)
T PRK15483 139 -KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-D 216 (986)
T ss_pred -ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-c
Confidence 11111 111 12368999999998865421 11 11233 3799999999965 3
Q ss_pred hHHHHHHHhcccceEEEEeccCCC
Q 000160 593 SQRWQTLLNFNSKRRILLTGTPLQ 616 (1992)
Q Consensus 593 Sq~~qaLl~L~a~rRLLLTGTPLQ 616 (1992)
.+.|.++..++..+.|.-|||--.
T Consensus 217 ~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred hHHHHHHHhcCcccEEEEeeecCC
Confidence 468899999999999999999643
No 137
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.02 E-value=0.0002 Score=95.60 Aligned_cols=72 Identities=26% Similarity=0.420 Sum_probs=59.7
Q ss_pred cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE-----ecCC---C---ChhhHHHHHH
Q 000160 1035 YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF-----YDSD---W---NPAMDQQAQD 1103 (1992)
Q Consensus 1035 ~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf-----yD~d---W---NPa~d~QA~g 1103 (1992)
..|.|..-+.+++..+|+..=+-|. ++.+.| ++||....-|+||.+ +|||+ |||. | .|....|..|
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~-~g~iqv-lvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFA-DGHIQV-LVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHh-cCceeE-EEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 3567777788899899988877785 588888 689999999999985 88887 7764 4 6788999999
Q ss_pred hhcccC
Q 000160 1104 RCHRIG 1109 (1992)
Q Consensus 1104 RahRIG 1109 (1992)
|++|-+
T Consensus 683 ragrp~ 688 (1674)
T KOG0951|consen 683 RAGRPQ 688 (1674)
T ss_pred hcCCCc
Confidence 999976
No 138
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.95 E-value=0.00086 Score=90.50 Aligned_cols=119 Identities=12% Similarity=0.055 Sum_probs=69.7
Q ss_pred eEEEEeehhhhhchhh--hhccCccEEEEcCccccCChhhHHHHHHHhc----ccceEEEEeccCCCC--ChHHHHHHHH
Q 000160 556 HVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNWKSQRWQTLLNF----NSKRRILLTGTPLQN--DLMELWSLMH 627 (1992)
Q Consensus 556 dVVITSYe~l~qD~~~--f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L----~a~rRLLLTGTPLQN--sL~ELwSLL~ 627 (1992)
.|++.|-+.+..|.-. +.-.....||+||||++.... .-.-.+..+ +..+..++|+.|-.- .+..+-.+|+
T Consensus 9 gi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~-~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 9 GIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESS-QEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccc-cHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 4888888898888532 333357899999999996533 222223333 344689999999763 3445555555
Q ss_pred HhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhhcCCCceeEEEEecCCHHHHHHHH
Q 000160 628 FLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYE 707 (1992)
Q Consensus 628 FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYd 707 (1992)
-|...-.- +..|.|..+++++-+ . +.....+.++|++.-+.+..
T Consensus 88 ~L~i~~v~--------------------------l~prf~~~V~~~l~~-~---------~~~V~ei~V~l~~~m~~Iq~ 131 (814)
T TIGR00596 88 NLFLRHVY--------------------------LWPRFHVEVASSLEK-H---------KAEVIELHVSLTDSMSQIQS 131 (814)
T ss_pred HhCcCeEE--------------------------EeCCCchHHHHHhcc-C---------CCeEEEEEeCCCHHHHHHHH
Confidence 55221110 012233344444421 1 12345678999998888776
Q ss_pred HHHH
Q 000160 708 DFIA 711 (1992)
Q Consensus 708 d~is 711 (1992)
.+..
T Consensus 132 ~l~~ 135 (814)
T TIGR00596 132 AILE 135 (814)
T ss_pred HHHH
Confidence 6543
No 139
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.86 E-value=0.0022 Score=86.29 Aligned_cols=129 Identities=16% Similarity=0.256 Sum_probs=102.4
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
-.|..++..-+.++...|.-|||-|.....-.+|...|...|+++-.|..... ++-..+|.+= +..-.+-++|..+
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A---G~~GaVTIATNMA 686 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA---GQPGTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc---CCCCcEEEeccCc
Confidence 47999999999999999999999999999999999999999999988876543 2333444432 2333346788999
Q ss_pred ccccCCc--------cCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1075 GVGINLV--------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1075 G~GLNLT--------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
|.|-++. |.=+||.-..+=+.-+|.|..|||+|.|..-....|- |+|+.++.+
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SLEDdLmr~ 747 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYV-----SLEDNLMRL 747 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEE-----EcccHHHHh
Confidence 9998765 5578999999999999999999999999866654432 456666654
No 140
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.84 E-value=0.0048 Score=82.81 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=75.7
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCC-cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCcc--CCEEE
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGY-TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG--ADTVI 1087 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi-~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~--AdtVI 1087 (1992)
.+.++|||...-.++..+...|..... ..+...|... +..++++|...... .|++.+.+..+|||+.+ +..||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 445899998888999999998887665 3555666665 55999999986664 56788899999999987 47788
Q ss_pred EecCCCC-h-----------------------------hhHHHHHHhhcccCCcCcEEE
Q 000160 1088 FYDSDWN-P-----------------------------AMDQQAQDRCHRIGQTREVHI 1116 (1992)
Q Consensus 1088 fyD~dWN-P-----------------------------a~d~QA~gRahRIGQTRdV~V 1116 (1992)
+.-.||= | ....||+||+.|-=+.+-|.|
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8877663 1 123799999999555555443
No 141
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.82 E-value=0.00073 Score=81.98 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=91.0
Q ss_pred EEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCC
Q 000160 1015 ALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWN 1094 (1992)
Q Consensus 1015 VLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWN 1094 (1992)
-|||+.-..-...+...|...||...-++.+.+..+|-.+-+.+-+ .++.| |+.|-+.|.|++=....-||+.|++=|
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~Pv-I~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPV-IAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCE-EEEEeccccccCCcceeEEEecCchhh
Confidence 3789988888999999999999999999999999999999999986 45666 688899999999999999999999999
Q ss_pred hhhHHHHHHhhcccCCcCcEEEEE
Q 000160 1095 PAMDQQAQDRCHRIGQTREVHIYR 1118 (1992)
Q Consensus 1095 Pa~d~QA~gRahRIGQTRdV~VYR 1118 (1992)
-+-.-|--||++|-|-..=+..|+
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hHHHHHhccccccCCCccceeeee
Confidence 999999999999999766666654
No 142
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.72 E-value=0.00034 Score=84.59 Aligned_cols=72 Identities=17% Similarity=0.040 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC---CCcEEEEecCC-cHHHHHHHHHHH
Q 000160 455 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI---WGPHLIVVPTS-VMLNWETEFLKW 526 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~---~GP~LIVVPtS-LL~NWe~EfkKw 526 (1992)
.||.|..-+.-+...+..+.++|+--.+|.|||+..+..+.......+. ..++++++++. .+.+=..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4999999999888888889999999999999999888666443333232 13677778874 444445556554
No 143
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.72 E-value=0.00034 Score=84.59 Aligned_cols=72 Identities=17% Similarity=0.040 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC---CCcEEEEecCC-cHHHHHHHHHHH
Q 000160 455 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI---WGPHLIVVPTS-VMLNWETEFLKW 526 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~---~GP~LIVVPtS-LL~NWe~EfkKw 526 (1992)
.||.|..-+.-+...+..+.++|+--.+|.|||+..+..+.......+. ..++++++++. .+.+=..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4999999999888888889999999999999999888666443333232 13677778874 444445556554
No 144
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.71 E-value=8e-05 Score=80.30 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=71.6
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCC
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPN 553 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~ 553 (1992)
.--+|---.|.|||-.+|--+..-...+ .+.+||+.|+-++.. |+.+...+..+ .|+-+...+ ...+
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~---em~~aL~~~~~-~~~t~~~~~-------~~~g 71 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAE---EMYEALKGLPV-RFHTNARMR-------THFG 71 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHH---HHHHHTTTSSE-EEESTTSS-----------S
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHH---HHHHHHhcCCc-ccCceeeec-------cccC
Confidence 3346777799999999886555443333 358999999987754 44444444442 222222211 1123
Q ss_pred CceEEEEeehhhhhch-hhhhccCccEEEEcCccccCChhhHHHHHHHh-c---ccceEEEEeccCC
Q 000160 554 SFHVCITTYRLIIQDS-KVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-F---NSKRRILLTGTPL 615 (1992)
Q Consensus 554 ~fdVVITSYe~l~qD~-~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~-L---~a~rRLLLTGTPL 615 (1992)
+-.|-+++|.++.+-. ..-+...|++||+||||.. ...|-..+-.+. + .....+++|+||-
T Consensus 72 ~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp SSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred CCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 4557888988876532 2344568999999999974 444443333222 2 1236899999995
No 145
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.66 E-value=0.0025 Score=81.97 Aligned_cols=252 Identities=20% Similarity=0.211 Sum_probs=139.6
Q ss_pred cCCCCCCccccccccccCCCCCCCCChHHHHHHHHHHHHHHccCc------cEEEEcCCCChHHHHHHHHHHHHHHhcCC
Q 000160 430 SAQPTGITFSTTQVRTKFPFLLKFPLREYQHIGLDWLVTMYEKRL------NGILADEMGLGKTIMTIAMLAHLACEKGI 503 (1992)
Q Consensus 430 s~qP~G~t~~tt~vkt~vP~lLk~~LRpYQ~~GL~WLvslye~~l------gGILADEMGLGKTIQtIALLa~La~ekg~ 503 (1992)
|..|+.++.. ..+|..-.+-|---|++++-|..++++..+ |-+|.|-.|.||-.++..+|..... +|.
T Consensus 245 SV~ppdi~Yq-----lalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-kGR 318 (1300)
T KOG1513|consen 245 SVEPPDITYQ-----LALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-KGR 318 (1300)
T ss_pred ccCCCCceEE-----EecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-ccc
Confidence 5556554433 345765668899999999999998887543 6688999999886555444443222 455
Q ss_pred CCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--------hhhc-
Q 000160 504 WGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--------VFKR- 574 (1992)
Q Consensus 504 ~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--------~f~r- 574 (1992)
.+...|-|-.-|-..-++.+.... .-.|-+|.-++-.-......-...-+-.|+..||..++-... -|+.
T Consensus 319 KrAlW~SVSsDLKfDAERDL~Dig-A~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQl 397 (1300)
T KOG1513|consen 319 KRALWFSVSSDLKFDAERDLRDIG-ATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQL 397 (1300)
T ss_pred ceeEEEEeccccccchhhchhhcC-CCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHH
Confidence 555556677777777777776643 222322221111000000000111233599999998876532 1222
Q ss_pred cCc------cEEEEcCccccCC-------hhhHHHHHHHhcc----cceEEEEeccCCCCChHHHHHHHHHhCCCCC---
Q 000160 575 KKW------KYLILDEAHLIKN-------WKSQRWQTLLNFN----SKRRILLTGTPLQNDLMELWSLMHFLMPHIF--- 634 (1992)
Q Consensus 575 ~~W------~~LILDEAH~IKN-------~~Sq~~qaLl~L~----a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if--- 634 (1992)
..| .+||+||||..|| ..++.-++++.|+ .-|.+--|+|--. |=-+|.....-++|
T Consensus 398 lqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGeg 473 (1300)
T KOG1513|consen 398 LQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEG 473 (1300)
T ss_pred HHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCC
Confidence 134 5899999999999 3467777777763 3466777777442 22233333333444
Q ss_pred ---CChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhhcCC--CceeEEEEecCCHHHHHHHHH
Q 000160 635 ---QSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLP--MKQEHVIYCRLSKRQRNLYED 708 (1992)
Q Consensus 635 ---~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVekqLP--~K~E~VV~c~LS~~Qr~LYdd 708 (1992)
..+.+|..-...- .....++|. +-.-+|...|-| ||. .-...+-.++||+.-+..|+.
T Consensus 474 taf~eF~eFi~AvEkR--------GvGAMEIVA-MDMK~rGmYiAR-------QLSFkgVsFrieEv~ls~eF~k~Yn~ 536 (1300)
T KOG1513|consen 474 TAFPEFEEFIHAVEKR--------GVGAMEIVA-MDMKLRGMYIAR-------QLSFKGVSFRIEEVPLSKEFRKVYNR 536 (1300)
T ss_pred CcCccHHHHHHHHHhc--------CCceeeeee-hhhhhhhhhhhh-------hccccCceEEEEecccCHHHHHHHHH
Confidence 3444443322211 111111211 122233333332 333 335677788999999999973
No 146
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.59 E-value=0.0035 Score=74.81 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=103.3
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCeE
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFKI 532 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~lKV 532 (1992)
..||.|+.+++-.+. +...+|--.+|-||++.-- .-..|.. |-.|||||. |+|..-...++...-....
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcyq---lpal~ad---g~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQ---LPALCAD---GFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhhh---hhHHhcC---CceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 479999999986544 5567888899999986321 1112322 568999998 8998888888887655445
Q ss_pred EEEeCchhHHHHhhhcc-CCCCCceEEEEeehhhhhchh-------hhhccCccEEEEcCccccCChh-------hHHHH
Q 000160 533 LTYFGSAKERKFKRQGW-LKPNSFHVCITTYRLIIQDSK-------VFKRKKWKYLILDEAHLIKNWK-------SQRWQ 597 (1992)
Q Consensus 533 L~Y~Gs~keRk~kr~gw-~k~~~fdVVITSYe~l~qD~~-------~f~r~~W~~LILDEAH~IKN~~-------Sq~~q 597 (1992)
+--..+..+.+...... .+...|..+-.|.+.+.+... .+....|.+|-+||.|-..-|. +.+.-
T Consensus 164 lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~i 243 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGI 243 (695)
T ss_pred ccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHH
Confidence 54444554444333332 345678888888877765533 3444578999999999765432 11112
Q ss_pred HHHhcccceEEEEeccCCCCChHHHH
Q 000160 598 TLLNFNSKRRILLTGTPLQNDLMELW 623 (1992)
Q Consensus 598 aLl~L~a~rRLLLTGTPLQNsL~ELw 623 (1992)
.-+.|+.-..++||+|...|-|.+.-
T Consensus 244 lkrqf~~~~iigltatatn~vl~d~k 269 (695)
T KOG0353|consen 244 LKRQFKGAPIIGLTATATNHVLDDAK 269 (695)
T ss_pred HHHhCCCCceeeeehhhhcchhhHHH
Confidence 22445666678888887765555433
No 147
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.58 E-value=0.00029 Score=98.08 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHhh-CCCeEEEEeCchHHHHHHHHHHHHcCC---cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000160 997 KLQELAILLRKLKS-DGHRALIFTQMTKMLDILEEFISLYGY---TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1072 (1992)
Q Consensus 997 KLq~L~~LL~kLks-~G~KVLIFSQ~t~mLDILe~~L~~~Gi---~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTr 1072 (1992)
++..+...+..+.. ....||||..-...++.+...|...++ .++-|+|+++.++|+.++..+ +..+ +|++|.
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rk-IVLATN 338 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRR-IVLATN 338 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCce-EEEecc
Confidence 34444555544432 446899999999999999999987654 578899999999999886544 2334 479999
Q ss_pred ccccccCCccCCEEEEecC----CCC--------------hhhHHHHHHhhcccCCcCcEEEEEEEeCCCHH
Q 000160 1073 SGGVGINLVGADTVIFYDS----DWN--------------PAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1126 (1992)
Q Consensus 1073 AGG~GLNLT~AdtVIfyD~----dWN--------------Pa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1126 (1992)
.+..||++.+..+||-++. -|| .+.-.||.|||+|.| +-.+|||+++...+
T Consensus 339 IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 339 VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 9999999999999998772 222 245678888888887 77889999976554
No 148
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.57 E-value=7.7e-05 Score=63.73 Aligned_cols=43 Identities=40% Similarity=0.815 Sum_probs=39.3
Q ss_pred CCChhhhHHHHHHHHhcC-CChhHHHHHhhccccCccccccccCchhhHHHHHHH
Q 000160 1592 VWLPQEDAILCAVVHEYG-PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1645 (1992)
Q Consensus 1592 ~w~~~ed~~l~~~v~~~g-~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1645 (1992)
+|+++||..|..+|..|| .+|..|+..| + .|++.+|+.||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~---~--------~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL---P--------GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc---C--------CCCHHHHHHHHHHh
Confidence 699999999999999999 7999999987 2 29999999999876
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.56 E-value=9.8e-06 Score=105.84 Aligned_cols=66 Identities=11% Similarity=-0.056 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeeehhhhhHHHHHHHHHhhhhhhhhchhhhhhHHHHHhhccCCC
Q 000160 19 LRKVAVNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQLEFLLGQTERYSSMLAENLVDSHK 84 (1992)
Q Consensus 19 lRriA~~iAkeV~~fw~~ieKvV~~K~Q~~leekrKKALd~qL~fivgqTEkYS~~Lae~l~~~~~ 84 (1992)
.+|.+..++|.|..||..--|.|..-+-.+....-.++-..|+.|.+|+.++-+++-..++..+.+
T Consensus 314 ~~k~~i~~lk~v~~~p~q~~lhv~~pa~e~gps~~r~~p~sh~sfa~~~v~e~~n~~~pgvv~s~p 379 (1958)
T KOG0391|consen 314 IPKPPISQLKIVPSQPAQLALHVPTPASEPGPSPARSSPVSHPSFATNKVLEPVNSRTPGVVASAP 379 (1958)
T ss_pred ccccchhhccccccchHHHhhcCCCccccCCCCchhcCccccchhhhhcccccccccCcceeeccC
Confidence 578899999999999999999999988888877778889999999999999988888888775443
No 150
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.56 E-value=0.04 Score=74.19 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=67.7
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCC-CHHHHHHHHHHHhcCCCceEEEEecc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGST-QPEERQTLMQRFNTNPKIFLFILSTR 1072 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGst-s~eqRq~lIerFN~D~~ifVfLLSTr 1072 (1992)
.-.|..++..-+.++...|.-|||-|.....-+.|...|...|+++-.|.... ..++-..+|.+ .++.-.+.++|.
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATN 482 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ---AGRKGSITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh---cCCCCcEEEecc
Confidence 34699999999889999999999999999999999999999999999998874 33444556654 244445578899
Q ss_pred ccccccCC
Q 000160 1073 SGGVGINL 1080 (1992)
Q Consensus 1073 AGG~GLNL 1080 (1992)
.+|.|.++
T Consensus 483 MAGRGTDI 490 (870)
T CHL00122 483 MAGRGTDI 490 (870)
T ss_pred ccCCCcCe
Confidence 99998653
No 151
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.54 E-value=0.00019 Score=85.51 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=73.6
Q ss_pred HHHHHHhcCCCceEEEEeccccccccCCccC----C---E-EEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCC
Q 000160 1053 TLMQRFNTNPKIFLFILSTRSGGVGINLVGA----D---T-VIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1124 (1992)
Q Consensus 1053 ~lIerFN~D~~ifVfLLSTrAGG~GLNLT~A----d---t-VIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1124 (1992)
...++|+. ++..|+|+| ++||.||.|++- | + -|.++++|+.....|-.||+||-||..+..+.-|++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 45678986 567788887 999999999852 2 3 468999999999999999999999998855545566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 000160 1125 IEENILKKANQKRALDDLVIQSGG 1148 (1992)
Q Consensus 1125 IEErIlkra~qKr~L~~~vIq~g~ 1148 (1992)
.|.|+.....+|..-..+...+..
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 899999888877766665555443
No 152
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.45 E-value=0.00019 Score=82.73 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=52.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccc
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINE 1660 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~ 1660 (1992)
..++||.+||++|..++..||..|..|+..| -.|+..+|+.||..++.+......-++...
T Consensus 77 ~kgpWT~EED~lLlel~~~~GnKWs~IAk~L-----------pGRTDnqIKNRWns~LrK~l~r~~i~p~~~ 137 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGNRWSLIAGRI-----------PGRTDNEIKNYWNTHLRKKLLRQGIDPQTH 137 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccccHHHHHhhc-----------CCCCHHHHHHHHHHHHhHHHHhcCCCCCCC
Confidence 3789999999999999999999999999977 349999999999999999877665554433
No 153
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.00063 Score=90.15 Aligned_cols=128 Identities=23% Similarity=0.371 Sum_probs=94.5
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCC---
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCP--- 528 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS-LL~NWe~EfkKw~P--- 528 (1992)
..|+..|+.....++. ..--.|+|- +|+|||--.+..-+++++. | +..+||+||. |+.|-..-++++.+
T Consensus 81 ~~~ws~QR~WakR~~r---g~SFaiiAP-TGvGKTTfg~~~sl~~a~k-g--kr~yii~PT~~Lv~Q~~~kl~~~~e~~~ 153 (1187)
T COG1110 81 FRPWSAQRVWAKRLVR---GKSFAIIAP-TGVGKTTFGLLMSLYLAKK-G--KRVYIIVPTTTLVRQVYERLKKFAEDAG 153 (1187)
T ss_pred CCchHHHHHHHHHHHc---CCceEEEcC-CCCchhHHHHHHHHHHHhc-C--CeEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 4678889876555543 444568775 9999997776666667663 3 6899999995 67788888888873
Q ss_pred CCeEEE-EeCch--hHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCcccc
Q 000160 529 AFKILT-YFGSA--KERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLI 588 (1992)
Q Consensus 529 ~lKVL~-Y~Gs~--keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~I 588 (1992)
++++++ |||.- ++++... .-...+.|||+|||-+.+.+....+.+.+|++|++|-+..+
T Consensus 154 ~~~~~~~yh~~l~~~ekee~l-e~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 154 SLDVLVVYHSALPTKEKEEAL-ERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred CcceeeeeccccchHHHHHHH-HHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 234433 99873 2322222 22355789999999999999999999999999999998865
No 154
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.42 E-value=0.00074 Score=92.90 Aligned_cols=90 Identities=20% Similarity=0.342 Sum_probs=62.2
Q ss_pred HHHHHHHHHH-hhCCCeEEEEeCchHHHHHHHHHHHH----cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 999 QELAILLRKL-KSDGHRALIFTQMTKMLDILEEFISL----YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 999 q~L~~LL~kL-ks~G~KVLIFSQ~t~mLDILe~~L~~----~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
+.+...|.++ ...+.++|||.....+++.+...|.. .++.. +..... ..|..++++|... ...| |+.|.+
T Consensus 660 ~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~-~~~i-Llgt~s 734 (850)
T TIGR01407 660 QEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNG-EKAI-LLGTSS 734 (850)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhC-CCeE-EEEcce
Confidence 3455555554 33456899999999999999998865 34443 323322 4799999999863 3334 567899
Q ss_pred cccccCCccCC--EEEEecCCC
Q 000160 1074 GGVGINLVGAD--TVIFYDSDW 1093 (1992)
Q Consensus 1074 GG~GLNLT~Ad--tVIfyD~dW 1093 (1992)
..+||++.+-. .||+.-.|+
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred eecccccCCCceEEEEEeCCCC
Confidence 99999998844 567766555
No 155
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.41 E-value=0.00054 Score=83.61 Aligned_cols=124 Identities=19% Similarity=0.230 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec----
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST---- 1071 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLST---- 1071 (1992)
.|+-.|..||+--.-.| |.|||.+-..+.--|.-||...|++-|.|.|.++..-|.-++++||. +-..|+|.|-
T Consensus 253 DKflllyallKL~LI~g-KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-G~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 253 DKFLLLYALLKLRLIRG-KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-GLYDIVIATDDSAD 330 (569)
T ss_pred hhHHHHHHHHHHHHhcC-ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC-cceeEEEEccCccc
Confidence 46666666665433344 99999999999999999999999999999999999999999999996 4445544443
Q ss_pred --------------------c-cc---------ccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEe
Q 000160 1072 --------------------R-SG---------GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLIS 1121 (1992)
Q Consensus 1072 --------------------r-AG---------G~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIs 1121 (1992)
+ ++ +.||++...+.||.||.|-++.....|+||..|-|.+-.+. -||+
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gtal--Sfv~ 408 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTAL--SFVS 408 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceE--EEec
Confidence 0 22 47999999999999999999999999999999988665543 4555
Q ss_pred CC
Q 000160 1122 ES 1123 (1992)
Q Consensus 1122 e~ 1123 (1992)
..
T Consensus 409 P~ 410 (569)
T KOG0346|consen 409 PK 410 (569)
T ss_pred ch
Confidence 43
No 156
>PLN03091 hypothetical protein; Provisional
Probab=97.26 E-value=0.00041 Score=85.34 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCC
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDN 1656 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~ 1656 (1992)
+++|+++||++|..+++.||+.|..|+..| ..|+..+|+.||..++.+......-+
T Consensus 67 KgpWT~EED~lLLeL~k~~GnKWskIAk~L-----------PGRTDnqIKNRWnslLKKklr~~~I~ 122 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGNRWSQIAAQL-----------PGRTDNEIKNLWNSCLKKKLRQRGID 122 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHhc-----------CCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 689999999999999999999999999988 44999999999999999976644333
No 157
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.25 E-value=0.0014 Score=90.56 Aligned_cols=140 Identities=23% Similarity=0.130 Sum_probs=85.9
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec-CCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCC
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP-TSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLK 551 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVP-tSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k 551 (1992)
+.+|++.+-.|.|||++++- +|+++........++|||= .-|-.|-..+|..+........-..+..+-+... .
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~-~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l----~ 347 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFK-LARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELL----E 347 (962)
T ss_pred CCceEEEeecCCchHHHHHH-HHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHH----h
Confidence 45899999999999998764 4555554433334455554 4677889999999876543322112222221111 1
Q ss_pred CCCceEEEEeehhhhhchh----hhhccCccEEEEcCccccCChhhHHHHHH-HhcccceEEEEeccCCCCCh
Q 000160 552 PNSFHVCITTYRLIIQDSK----VFKRKKWKYLILDEAHLIKNWKSQRWQTL-LNFNSKRRILLTGTPLQNDL 619 (1992)
Q Consensus 552 ~~~fdVVITSYe~l~qD~~----~f~r~~W~~LILDEAH~IKN~~Sq~~qaL-l~L~a~rRLLLTGTPLQNsL 619 (1992)
...-.|+|||-+.|..... .....++-.||+||||+=-.-. ..+.+ ..|..-.-++.||||+.-.-
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~--~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGE--LAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccH--HHHHHHHHhccceEEEeeCCcccccc
Confidence 1234699999988865432 2345678899999999753311 12222 22344667899999997543
No 158
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.17 E-value=0.001 Score=80.60 Aligned_cols=94 Identities=22% Similarity=0.371 Sum_probs=82.3
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcC---CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYG---YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~G---i~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
-.|+|||+.-..-.|-|+.+++..| |.++-++|..++.+|.+-+++|.. .+++ ||+.|..+..||++++--.+|.
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvk-flictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVK-FLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeE-EEEEehhhhccccccCCceEEE
Confidence 4699999999999999999998764 678899999999999999999986 4444 6888999999999999999999
Q ss_pred ecCCCChhhHHHHHHhhcc
Q 000160 1089 YDSDWNPAMDQQAQDRCHR 1107 (1992)
Q Consensus 1089 yD~dWNPa~d~QA~gRahR 1107 (1992)
+-.+-..+....+|||++|
T Consensus 583 vtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred EecCcccchhhhhhhccch
Confidence 9998888888887777666
No 159
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.10 E-value=0.003 Score=83.36 Aligned_cols=78 Identities=22% Similarity=0.167 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC-----CCCeE
Q 000160 459 QHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC-----PAFKI 532 (1992)
Q Consensus 459 Q~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~-----P~lKV 532 (1992)
|.+-+.++..-+..+...|+--.+|.|||+..+.-+...+.. ...+++||.+|+ .+..|+..++.... ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 677777888877777777777899999998776554433332 123689999999 57788888876554 24555
Q ss_pred EEEeC
Q 000160 533 LTYFG 537 (1992)
Q Consensus 533 L~Y~G 537 (1992)
....|
T Consensus 81 ~~lkG 85 (636)
T TIGR03117 81 GFFPG 85 (636)
T ss_pred EEEEC
Confidence 55555
No 160
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.07 E-value=0.0071 Score=69.28 Aligned_cols=153 Identities=24% Similarity=0.256 Sum_probs=82.5
Q ss_pred CChHHHHHHHHHHHHHHccCcc-EEEEcCCCChHHHHHHHHHHHHH-----HhcCCCCcEEEEecCC-cHHHHHHHHHH-
Q 000160 454 PLREYQHIGLDWLVTMYEKRLN-GILADEMGLGKTIMTIAMLAHLA-----CEKGIWGPHLIVVPTS-VMLNWETEFLK- 525 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lg-GILADEMGLGKTIQtIALLa~La-----~ekg~~GP~LIVVPtS-LL~NWe~EfkK- 525 (1992)
.|-+.|..++..++. ..+ .++.-..|.|||-...++++++. ......+++||++|++ .+.+-...|.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~ 76 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKL 76 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhh
Confidence 378999999976543 344 78888899999987777777772 2345667999999985 46666666655
Q ss_pred -----HCCCCeEEEEeCch-h-H---HHHh----hhccC------------------------------C----------
Q 000160 526 -----WCPAFKILTYFGSA-K-E---RKFK----RQGWL------------------------------K---------- 551 (1992)
Q Consensus 526 -----w~P~lKVL~Y~Gs~-k-e---Rk~k----r~gw~------------------------------k---------- 551 (1992)
-.+..+++.++... + . .... ...+. .
T Consensus 77 ~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (236)
T PF13086_consen 77 LDEDGKVYKPKIIRLGSEEEKIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKIRLSELKEEKKKLKKSIKRLRKEL 156 (236)
T ss_dssp -------TT--EEE---GGTTS--TTGGGBHHHHHHTTT-----------THHHCHHHHHHHHHHHCCSSCHHHHHHHHH
T ss_pred ccccccccccchhhhcccccccccccccccccccccccccccchhhhHHHHHHHHhhhhhhhhhhhhhcchhcccccccc
Confidence 12334554443332 0 0 0000 00000 0
Q ss_pred -----------CCCceEEEEeehhhhhchhhhhcc--CccEEEEcCccccCChhhHHHHHHHhc-ccceEEEEeccCCCC
Q 000160 552 -----------PNSFHVCITTYRLIIQDSKVFKRK--KWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRILLTGTPLQN 617 (1992)
Q Consensus 552 -----------~~~fdVVITSYe~l~qD~~~f~r~--~W~~LILDEAH~IKN~~Sq~~qaLl~L-~a~rRLLLTGTPLQN 617 (1992)
...++||++|-..+.. ..+... .|++||||||=.+.- ..++..| .+..+++|.|=|-|-
T Consensus 157 ~~~~~~~~~~~l~~~~vi~~T~~~~~~--~~~~~~~~~~d~vIvDEAsq~~e-----~~~l~~l~~~~~~~vlvGD~~QL 229 (236)
T PF13086_consen 157 EKIREELRRFILKEADVIFTTLSSAAS--PFLSNFKEKFDVVIVDEASQITE-----PEALIPLSRAPKRIVLVGDPKQL 229 (236)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETCGGG---CCGTT-----SEEEETTGGGS-H-----HHHHHHHTTTBSEEEEEE-TTS-
T ss_pred cccccchhhhhcccccccccccccchh--hHhhhhcccCCEEEEeCCCCcch-----HHHHHHHHHhCCEEEEECChhhc
Confidence 0135688888777732 234444 799999999977642 2233332 333899999988873
No 161
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.97 E-value=0.0026 Score=86.01 Aligned_cols=72 Identities=21% Similarity=0.116 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHH
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLK 525 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkK 525 (1992)
+.||.|++-..-+..-...+.++||--.+|.|||+.+|+.........+...+++..+.+ |-+.|-..|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 469999999999999999999999999999999999887666554444444566777777 568889999988
No 162
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.058 Score=72.25 Aligned_cols=153 Identities=19% Similarity=0.239 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~lK 531 (1992)
..|-+-|..+++-+..........+|.--+|.|||=.-+-+|+..... | +-+||+||- ++..|-...|+.-++ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-G--kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-G--KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-C--CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 468899999999887754223456889999999999888888876543 3 478999997 899998888887776 78
Q ss_pred EEEEeCchhHHHHhhhccC--CCCCceEEEEeehhhhhchhhhhccCccEEEEcCcccc--CChh-----hHHHHHHHh-
Q 000160 532 ILTYFGSAKERKFKRQGWL--KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLI--KNWK-----SQRWQTLLN- 601 (1992)
Q Consensus 532 VL~Y~Gs~keRk~kr~gw~--k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~I--KN~~-----Sq~~qaLl~- 601 (1992)
|.++|..-.... +...|. ..+...|||-|-..+..- | .+-.+|||||=|-- |-.+ ..-.-.++.
T Consensus 273 v~vlHS~Ls~~e-r~~~W~~~~~G~~~vVIGtRSAlF~P---f--~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 273 VAVLHSGLSPGE-RYRVWRRARRGEARVVIGTRSALFLP---F--KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred hhhhcccCChHH-HHHHHHHHhcCCceEEEEechhhcCc---h--hhccEEEEeccccccccCCcCCCcCHHHHHHHHHH
Confidence 888886443322 222343 346778999888776432 2 24589999999963 2222 111111221
Q ss_pred cccceEEEEeccCC
Q 000160 602 FNSKRRILLTGTPL 615 (1992)
Q Consensus 602 L~a~rRLLLTGTPL 615 (1992)
...-..+|=|+||-
T Consensus 347 ~~~~pvvLgSATPS 360 (730)
T COG1198 347 KENAPVVLGSATPS 360 (730)
T ss_pred HhCCCEEEecCCCC
Confidence 23335788899995
No 163
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=96.88 E-value=0.31 Score=65.42 Aligned_cols=159 Identities=19% Similarity=0.257 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHH-HH-CCCCeE-
Q 000160 457 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFL-KW-CPAFKI- 532 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~Efk-Kw-~P~lKV- 532 (1992)
.+|+.-++-. +++...+|.-.+-.|||...--++-...+. ...|-++-|+|+ +++.|=..++. +| .+.+.-
T Consensus 514 ~WQ~elLDsv----Dr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 514 EWQRELLDSV----DRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred HHHHHHhhhh----hcccceEEEeeccCCceeccHHHHHHHHhh-cCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 4566555432 345566777779999999887777665554 445778999998 67777666664 44 343322
Q ss_pred EEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhch-----hhhhccCccEEEEcCccccCCh-hhHHHHHHHhcccce
Q 000160 533 LTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS-----KVFKRKKWKYLILDEAHLIKNW-KSQRWQTLLNFNSKR 606 (1992)
Q Consensus 533 L~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~-----~~f~r~~W~~LILDEAH~IKN~-~Sq~~qaLl~L~a~r 606 (1992)
....|.- .+.--..+-.+.|.||-.+.+..-. ..---.+.+|||+||.|.|.|+ .+..|..++.+-.--
T Consensus 589 ~sl~g~l-----tqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP 663 (1330)
T KOG0949|consen 589 VSLLGDL-----TQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCP 663 (1330)
T ss_pred hhhHhhh-----hHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCC
Confidence 2222322 1111112346889999987663321 1111135689999999999997 477888888887778
Q ss_pred EEEEeccCCCCChHHHHHHHH
Q 000160 607 RILLTGTPLQNDLMELWSLMH 627 (1992)
Q Consensus 607 RLLLTGTPLQNsL~ELwSLL~ 627 (1992)
-|.|++| ++|+..++-.++
T Consensus 664 ~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 664 FLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred eeEEecc--cCCHHHHHHHHH
Confidence 8999999 567777666665
No 164
>PRK10536 hypothetical protein; Provisional
Probab=96.76 E-value=0.0043 Score=73.45 Aligned_cols=146 Identities=22% Similarity=0.200 Sum_probs=85.4
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCC--
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAF-- 530 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~l-- 530 (1992)
.++-..|...+.||.. +...++--+.|.|||..++++..+.... +....++|+=|+ +-. .|.-.|.|+-
T Consensus 58 ~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~-v~~---ge~LGfLPG~~~ 128 (262)
T PRK10536 58 LARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPV-LQA---DEDLGFLPGDIA 128 (262)
T ss_pred cCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCC-CCc---hhhhCcCCCCHH
Confidence 4567899999988854 4578888999999999999988865333 333333333333 322 3444555541
Q ss_pred -eEEEE-----------eCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHH
Q 000160 531 -KILTY-----------FGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQT 598 (1992)
Q Consensus 531 -KVL~Y-----------~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qa 598 (1992)
|+..| .|...-....+ ...-.|.|.+...++-. ...-.+|||||||++.- .+....
T Consensus 129 eK~~p~~~pi~D~L~~~~~~~~~~~~~~-----~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~k~~ 196 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLGASFMQYCLR-----PEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQMKMF 196 (262)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHH-----hccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--HHHHHH
Confidence 11111 11111111100 01122444443332211 12348999999999864 455556
Q ss_pred HHhcccceEEEEeccCCCCCh
Q 000160 599 LLNFNSKRRILLTGTPLQNDL 619 (1992)
Q Consensus 599 Ll~L~a~rRLLLTGTPLQNsL 619 (1992)
+..+....+++++|-|-|.++
T Consensus 197 ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 197 LTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HhhcCCCCEEEEeCChhhccC
Confidence 667788899999999988764
No 165
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.75 E-value=0.003 Score=72.70 Aligned_cols=144 Identities=25% Similarity=0.317 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCC---C
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPA---F 530 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~---l 530 (1992)
++-++|...++-|. .....++--..|.|||+.+++..+++... +....++|+-|..-+..+ + -|.|+ -
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~---l-GflpG~~~e 74 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGED---L-GFLPGDLEE 74 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS------
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccc---c-ccCCCCHHH
Confidence 35689999998877 24456778889999999999999888765 666677777666533222 1 12222 0
Q ss_pred eEEEEe-----------CchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHH
Q 000160 531 KILTYF-----------GSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTL 599 (1992)
Q Consensus 531 KVL~Y~-----------Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaL 599 (1992)
|.-.|. |...-...... ..|-+.+...++- +.+.+.+||||||||+.. .+.-..+
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~~~~~-------~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t~--~~~k~il 140 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEELIQN-------GKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLTP--EELKMIL 140 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHHHHHT-------TSEEEEEGGGGTT-------B-SEEEEE-SGGG--H--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHhhc-------CeEEEEehhhhcC-----ccccceEEEEecccCCCH--HHHHHHH
Confidence 111111 11111111111 1133333322211 123468999999998753 2333345
Q ss_pred HhcccceEEEEeccCCCCChH
Q 000160 600 LNFNSKRRILLTGTPLQNDLM 620 (1992)
Q Consensus 600 l~L~a~rRLLLTGTPLQNsL~ 620 (1992)
-++....++.++|=|-|.++.
T Consensus 141 TR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 141 TRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TTB-TT-EEEEEE--------
T ss_pred cccCCCcEEEEecCceeecCC
Confidence 556667899999999987654
No 166
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.011 Score=80.79 Aligned_cols=158 Identities=16% Similarity=0.287 Sum_probs=103.7
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF 530 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~l 530 (1992)
.+.|-++|++++.-|- .+.+.++|--+|.|||+.+.-+++.-.. .|. .+.-..|. .+..|=-++|..-+..+
T Consensus 117 ~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~-~~q--rviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 117 PFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALR-DGQ--RVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHH-cCC--ceEeccchhhhhhhHHHHHHHHhhhh
Confidence 4679999999997664 4788999999999999999877765443 333 37888896 56666666776544422
Q ss_pred --eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhch--hhhhccCccEEEEcCccccCCh-hhHHHHHHHhc-cc
Q 000160 531 --KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNW-KSQRWQTLLNF-NS 604 (1992)
Q Consensus 531 --KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~--~~f~r~~W~~LILDEAH~IKN~-~Sq~~qaLl~L-~a 604 (1992)
-|-++.|... ..++..-+|.|| +.++.-. ..........||+||.|.|... ..-.|.-+.-+ ..
T Consensus 190 ~~~vGL~TGDv~---------IN~~A~clvMTT-EILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 190 ADMVGLMTGDVS---------INPDAPCLVMTT-EILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhccceeccee---------eCCCCceEEeeH-HHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 2345555432 233444555566 5554321 1122234577999999999763 45566665444 33
Q ss_pred -ceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcC
Q 000160 605 -KRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCN 646 (1992)
Q Consensus 605 -~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~ 646 (1992)
-+-++||+| .++..+|..|++.
T Consensus 260 ~v~~v~LSAT--------------------v~N~~EF~~Wi~~ 282 (1041)
T COG4581 260 HVRFVFLSAT--------------------VPNAEEFAEWIQR 282 (1041)
T ss_pred CCcEEEEeCC--------------------CCCHHHHHHHHHh
Confidence 378999999 2455789999964
No 167
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.65 E-value=0.0062 Score=76.67 Aligned_cols=108 Identities=22% Similarity=0.283 Sum_probs=81.6
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCc-EEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccccccCCccCCEEE
Q 000160 1010 SDGHRALIFTQMTKMLDILEEFISLYGYT-YMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGVGINLVGADTVI 1087 (1992)
Q Consensus 1010 s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~-y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAGG~GLNLT~AdtVI 1087 (1992)
..|+-|+-||.- -+--+..-+..+|.. ++.|+|+.+++.|-+....||. +..+.| |+.|+|.|-||||- ..+||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeecccccccccc-eeEEE
Confidence 357888889863 333445556666655 9999999999999999999997 456666 56669999999995 58999
Q ss_pred EecCC---------CChhhHHHHHHhhcccCCcCc-EEEEEEEe
Q 000160 1088 FYDSD---------WNPAMDQQAQDRCHRIGQTRE-VHIYRLIS 1121 (1992)
Q Consensus 1088 fyD~d---------WNPa~d~QA~gRahRIGQTRd-V~VYRLIs 1121 (1992)
||+.. -.-....|--||++|.|..-+ -.|..|-.
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 99974 344667899999999987655 34433433
No 168
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.63 E-value=0.039 Score=63.84 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCc--EEEEecCC-cHHHHHHHHHH---HCCC
Q 000160 456 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGP--HLIVVPTS-VMLNWETEFLK---WCPA 529 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP--~LIVVPtS-LL~NWe~EfkK---w~P~ 529 (1992)
-+-|++.+-..+- +...+.-.--|+|||..- +|+.|..-....|- +||+|-+. +..|-..|+.| +.|+
T Consensus 66 sevqhecipqail----gmdvlcqaksgmgktavf--vl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 66 SEVQHECIPQAIL----GMDVLCQAKSGMGKTAVF--VLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred hHhhhhhhhHHhh----cchhheecccCCCceeee--ehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 4556666543322 222344455899999543 45555554555553 57778774 66677777654 5699
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc--hhhhhccCccEEEEcCccc
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHL 587 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD--~~~f~r~~W~~LILDEAH~ 587 (1992)
.|+-+|+|.-.-.+... ..+ +..|||+.|...+..- ...|.-...+..|||||..
T Consensus 140 vkvaVFfGG~~Ikkdee--~lk-~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDEE--LLK-NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred ceEEEEEcceeccccHH--HHh-CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 99999999754332211 112 3678999988776542 2345555677888888863
No 169
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.60 E-value=0.0026 Score=77.72 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=106.4
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|..+|..+|..... ..+.+||.--.....++...|+..|+....++|++....|..-+.+|+. ++. -+|++|+.+.
T Consensus 246 ~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~-~k~-~~lvvTdvaa 322 (529)
T KOG0337|consen 246 EKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG-RKT-SILVVTDVAA 322 (529)
T ss_pred HHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC-Ccc-ceEEEehhhh
Confidence 577888888876544 4589999999999999999999999999999999999999999999986 333 3578899999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
.|+++..-++||.||.+-.|.....++||+.|-|.+ -.-|-||+..
T Consensus 323 RG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 323 RGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred ccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEecc
Confidence 999999999999999999999999999999998854 4567777764
No 170
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.30 E-value=0.23 Score=67.27 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=67.8
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCC-CCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGS-TQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGs-ts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
-.|..++..-+.++...|.-|||-|.....-..|...|...|+.+-.|... ...++-..+|..= ++.--+.++|..
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A---G~~GaVTIATNM 498 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA---GRKGAVTIATNM 498 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc---CCCCcEEEeccC
Confidence 579999999999999999999999999999999999999999999999886 3434445566552 333334678899
Q ss_pred cccccCC
Q 000160 1074 GGVGINL 1080 (1992)
Q Consensus 1074 GG~GLNL 1080 (1992)
+|.|-++
T Consensus 499 AGRGTDI 505 (939)
T PRK12902 499 AGRGTDI 505 (939)
T ss_pred CCCCcCE
Confidence 9999775
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.01 E-value=0.039 Score=66.12 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=88.5
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH----HHHHHHHHHC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML----NWETEFLKWC 527 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~----NWe~EfkKw~ 527 (1992)
...+++-|+.|+--| ..|-|.=-.+|=|||+++. +++.+..-.| .++=||+.+..+. +|...|-+++
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~-l~a~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAA-LPAALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHH-HHHHHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHH-HHHHHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 455788888887444 2245777889999999885 4444444344 3566666665554 3888888887
Q ss_pred CCCeEEEEeCchh--HHHHhhhccCCCCCceEEEEeehhhhhch---------hhhhccCccEEEEcCccccCC------
Q 000160 528 PAFKILTYFGSAK--ERKFKRQGWLKPNSFHVCITTYRLIIQDS---------KVFKRKKWKYLILDEAHLIKN------ 590 (1992)
Q Consensus 528 P~lKVL~Y~Gs~k--eRk~kr~gw~k~~~fdVVITSYe~l~qD~---------~~f~r~~W~~LILDEAH~IKN------ 590 (1992)
++.+-...+... +|+.. ...+|+-+|-..+.-|. .......+.++||||+-.+-=
T Consensus 146 -Glsv~~~~~~~~~~~r~~~-------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDea~~p 217 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREA-------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDEARTP 217 (266)
T ss_dssp -T--EEEEETTTEHHHHHHH-------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTGCCSE
T ss_pred -hhccccCccccCHHHHHHH-------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEecCccc
Confidence 566655555432 22211 13568777766665441 112245789999999875410
Q ss_pred ------------------hhhHHHHHHHhcccceEEEEeccCCCCChHHHH
Q 000160 591 ------------------WKSQRWQTLLNFNSKRRILLTGTPLQNDLMELW 623 (1992)
Q Consensus 591 ------------------~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELw 623 (1992)
..+-.++.++..- .+..+|||| ....-.|||
T Consensus 218 l~is~~Ke~~~i~~~~~t~a~is~q~~f~~Y-~~l~GmTGT-a~~~~~e~~ 266 (266)
T PF07517_consen 218 LIISGAKEGLKITPESLTLASISYQNFFRLY-PKLSGMTGT-AKTEAKEFW 266 (266)
T ss_dssp EEEEEHHTTS----SEEEEEEEEHHHHHTTS-SEEEEEESS-TGGGHHHHH
T ss_pred ccccccccCCccCCCCeEEEEeehHHHHHhc-chheeeCCC-ChhhHhhcC
Confidence 0122344444443 337899999 777777777
No 172
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.99 E-value=0.028 Score=74.17 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=90.8
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH-----H---HHHHH-HHHCCC--CeEEEEeCch
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML-----N---WETEF-LKWCPA--FKILTYFGSA 539 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~-----N---We~Ef-kKw~P~--lKVL~Y~Gs~ 539 (1992)
...+|.=+-.|+|.|||.+-+-+|..|....|. -.++||||+-.+. + -...| +.++.+ +..++|.-..
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~-~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~ 150 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKKYGL-FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDI 150 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHHhCc-eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHH
Confidence 345566667899999999999999998877664 5899999984332 2 23344 555543 4555554322
Q ss_pred hHHHHhhhccCCCCCceEEEEeehhhhhc---hhhhh-------------cc-------CccEEEEcCccccCChhhHHH
Q 000160 540 KERKFKRQGWLKPNSFHVCITTYRLIIQD---SKVFK-------------RK-------KWKYLILDEAHLIKNWKSQRW 596 (1992)
Q Consensus 540 keRk~kr~gw~k~~~fdVVITSYe~l~qD---~~~f~-------------r~-------~W~~LILDEAH~IKN~~Sq~~ 596 (1992)
...+.+ ..+...|+|.+.+.+-++ ...+. .. ---.||+||-|++... .+.|
T Consensus 151 ~~~~~~-----~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~ 224 (985)
T COG3587 151 EKFKFK-----SNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTY 224 (985)
T ss_pred HHHhhc-----cCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHH
Confidence 222222 335677888887777665 11110 00 1246999999999865 7899
Q ss_pred HHHHhcccceEEEEecc
Q 000160 597 QTLLNFNSKRRILLTGT 613 (1992)
Q Consensus 597 qaLl~L~a~rRLLLTGT 613 (1992)
.++..+++...|=..||
T Consensus 225 ~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 225 GAIKQLNPLLILRFGAT 241 (985)
T ss_pred HHHHhhCceEEEEeccc
Confidence 99999998887777777
No 173
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.79 E-value=0.073 Score=73.24 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccccc
Q 000160 999 QELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGI 1078 (1992)
Q Consensus 999 q~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GL 1078 (1992)
..+...|..+...+.++|||...-++|..+...|....+. +..-|... .|..++++|....+ - +|+.|.+..+||
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~-~l~Qg~~~--~~~~l~~~F~~~~~-~-vLlG~~sFwEGV 708 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVS-HLAQEKNG--TAYNIKKRFDRGEQ-Q-ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCc-EEEeCCCc--cHHHHHHHHHcCCC-e-EEEecchhhCCC
Confidence 3455555555555668888777778888888888765443 35556433 36779999987333 2 467789999999
Q ss_pred CCcc--CCEEEEecCC
Q 000160 1079 NLVG--ADTVIFYDSD 1092 (1992)
Q Consensus 1079 NLT~--AdtVIfyD~d 1092 (1992)
++.+ +..||+.=.|
T Consensus 709 D~p~~~~~~viI~kLP 724 (820)
T PRK07246 709 DFVQADRMIEVITRLP 724 (820)
T ss_pred CCCCCCeEEEEEecCC
Confidence 9964 5566666644
No 174
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.53 E-value=0.086 Score=73.63 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHh-hCCCeEEEEeCchHHHHHHHHHHHHcCC--cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 998 LQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGY--TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 998 Lq~L~~LL~kLk-s~G~KVLIFSQ~t~mLDILe~~L~~~Gi--~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
...+...|..+. ..+.++|||...-+++..+...|..... .+..+.-+++...|.+++++|....+ .+|+.+.+.
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~--~iLlG~~sF 814 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK--AILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC--eEEEecCcc
Confidence 345666665554 3445777777777888888888864322 13333322222358999999986332 246678899
Q ss_pred ccccCCccC--CEEEEecCCC-Chh
Q 000160 1075 GVGINLVGA--DTVIFYDSDW-NPA 1096 (1992)
Q Consensus 1075 G~GLNLT~A--dtVIfyD~dW-NPa 1096 (1992)
.+||++.+. ..||+.=.|+ +|.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 999999884 7888888777 453
No 175
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.33 E-value=0.017 Score=60.66 Aligned_cols=115 Identities=20% Similarity=0.227 Sum_probs=61.0
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhc---CCCCcEEEEecCCc-HHHHHHHHHHHCC-CCeEEEEeCchhHHHHhhh
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEK---GIWGPHLIVVPTSV-MLNWETEFLKWCP-AFKILTYFGSAKERKFKRQ 547 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ek---g~~GP~LIVVPtSL-L~NWe~EfkKw~P-~lKVL~Y~Gs~keRk~kr~ 547 (1992)
+..+++.-+.|.|||..+-.++..+.... +...-..|-+|... ...+..++..-+. .... .++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~--------- 71 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQT--------- 71 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCC---------
Confidence 44567888999999998888877665421 11111233445444 4455455443221 1000 000
Q ss_pred ccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc--ccceEEEEeccC
Q 000160 548 GWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF--NSKRRILLTGTP 614 (1992)
Q Consensus 548 gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L--~a~rRLLLTGTP 614 (1992)
.......-...+.+..-.+|||||||++. +......+..+ ...-.++|+|||
T Consensus 72 -------------~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 72 -------------SDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -------------HHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 01111111233444444799999999983 24444555444 667889999999
No 176
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.30 E-value=0.012 Score=81.13 Aligned_cols=181 Identities=24% Similarity=0.309 Sum_probs=103.6
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCCh--HHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLG--KTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPA 529 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLG--KTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~ 529 (1992)
...+.+||.....-.... ......++++.|+| ||+.+.+++..... .+.....++++|..+..+|..+...+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (866)
T COG0553 82 RFILIPHQLDIALEVLNE--LALRVLIADEVGLGDLKTIEAGAILKELLL-RGEIKRVLILVPKTLRAQWVVELLEKFNI 158 (866)
T ss_pred ccccCcchhhhhhhhhhh--hhhchhhcccccccccccccccccchHhhh-hhhhccceeccchHHHHHHHHHhhhhccc
Confidence 345566666655432221 12237889999999 89998777665443 45567889999999999999998776321
Q ss_pred -CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc----hhhhhccCc---cEEEEcCccccCChh---------
Q 000160 530 -FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD----SKVFKRKKW---KYLILDEAHLIKNWK--------- 592 (1992)
Q Consensus 530 -lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD----~~~f~r~~W---~~LILDEAH~IKN~~--------- 592 (1992)
..++...+........+. +........++.++...... ...+....| +++++||+|++.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (866)
T COG0553 159 RLAVLDKEGLRYLLKQYDA-YNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLE 237 (866)
T ss_pred cchhhhhhhhhhhhhhhcc-cccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchh
Confidence 112111111111111000 01000111134444444333 123444557 899999999988742
Q ss_pred hHHHHHHHhccc--c------eEEEEeccCCCCChHHHHHHHHHhCCCCCCC
Q 000160 593 SQRWQTLLNFNS--K------RRILLTGTPLQNDLMELWSLMHFLMPHIFQS 636 (1992)
Q Consensus 593 Sq~~qaLl~L~a--~------rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s 636 (1992)
...+..+..+.. . ...++++||.+....+++..+.++.+..+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 238 TLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred hhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 333444433311 1 2348899999999888887777776655554
No 177
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.11 E-value=0.078 Score=68.19 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=63.2
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL-L~NWe~EfkKw~P~lK 531 (1992)
-.|-.-|..+|...++ +.=.||--..|.|||++.-+++.|++.. ..||+||++|+.+ +.|-..-|.+- ++|
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLK 480 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--Cce
Confidence 3578899999998776 3346888899999999999999999876 4589999999976 67777777664 588
Q ss_pred EEEEeCchh
Q 000160 532 ILTYFGSAK 540 (1992)
Q Consensus 532 VL~Y~Gs~k 540 (1992)
|+......+
T Consensus 481 VvRl~aksR 489 (935)
T KOG1802|consen 481 VVRLCAKSR 489 (935)
T ss_pred Eeeeehhhh
Confidence 877655443
No 178
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.97 E-value=0.26 Score=66.25 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHCCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWCPAF 530 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL-L~NWe~EfkKw~P~l 530 (1992)
...|-+.|+.+|.+.+. .....|+--..|.|||.+.++++.++.. .|. ++||++|+.. +.+....+... +.
T Consensus 155 ~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~-~g~--~VLv~a~sn~Avd~l~e~l~~~--~~ 226 (637)
T TIGR00376 155 DPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVK-RGL--RVLVTAPSNIAVDNLLERLALC--DQ 226 (637)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHH-cCC--CEEEEcCcHHHHHHHHHHHHhC--CC
Confidence 35789999999988654 2345677888999999988888887654 333 7999999975 55666666553 44
Q ss_pred eEEEEe
Q 000160 531 KILTYF 536 (1992)
Q Consensus 531 KVL~Y~ 536 (1992)
+++.+.
T Consensus 227 ~vvRlg 232 (637)
T TIGR00376 227 KIVRLG 232 (637)
T ss_pred cEEEeC
Confidence 554443
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.67 E-value=0.27 Score=56.42 Aligned_cols=130 Identities=22% Similarity=0.229 Sum_probs=66.1
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEE
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKIL 533 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL 533 (1992)
+|-+-|+.++..++. ....-.+|.--.|.|||...-.+...+. ..| ..+++++|+.....= +.+-+ +....
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~-~~g--~~v~~~apT~~Aa~~---L~~~~-~~~a~ 71 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALE-AAG--KRVIGLAPTNKAAKE---LREKT-GIEAQ 71 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHH-HTT----EEEEESSHHHHHH---HHHHH-TS-EE
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHH-hCC--CeEEEECCcHHHHHH---HHHhh-Ccchh
Confidence 478899999999876 2223356667799999986555444443 333 578999999654331 22211 11222
Q ss_pred EEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHh-cc-cceEEEEe
Q 000160 534 TYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-FN-SKRRILLT 611 (1992)
Q Consensus 534 ~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~-L~-a~rRLLLT 611 (1992)
+++.--... ...+.. ... ......+||||||..+-+ .....|+. +. ...+++|.
T Consensus 72 Ti~~~l~~~---~~~~~~-~~~-----------------~~~~~~vliVDEasmv~~---~~~~~ll~~~~~~~~klilv 127 (196)
T PF13604_consen 72 TIHSFLYRI---PNGDDE-GRP-----------------ELPKKDVLIVDEASMVDS---RQLARLLRLAKKSGAKLILV 127 (196)
T ss_dssp EHHHHTTEE---CCEECC-SSC-----------------C-TSTSEEEESSGGG-BH---HHHHHHHHHS-T-T-EEEEE
T ss_pred hHHHHHhcC---Cccccc-ccc-----------------cCCcccEEEEecccccCH---HHHHHHHHHHHhcCCEEEEE
Confidence 211100000 000000 000 023457999999999864 23333333 33 36799999
Q ss_pred ccCCC
Q 000160 612 GTPLQ 616 (1992)
Q Consensus 612 GTPLQ 616 (1992)
|-|-|
T Consensus 128 GD~~Q 132 (196)
T PF13604_consen 128 GDPNQ 132 (196)
T ss_dssp E-TTS
T ss_pred CCcch
Confidence 99987
No 180
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.63 E-value=0.15 Score=68.50 Aligned_cols=125 Identities=12% Similarity=0.001 Sum_probs=84.6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccC--CCCCceEE
Q 000160 482 MGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWL--KPNSFHVC 558 (1992)
Q Consensus 482 MGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~--k~~~fdVV 558 (1992)
.|.|||-.-+.++...... | +..||+||. ++..|+..-|+..+++..|.+||........ ...|. ..+...||
T Consensus 169 ~GSGKTevyl~~i~~~l~~-G--k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R-~~~w~~~~~G~~~IV 244 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA-G--RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADR-YRRWLAVLRGQARVV 244 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc-C--CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHH-HHHHHHHhCCCCcEE
Confidence 3999999999999877653 2 358999998 7889999999999986788889875543322 22343 34567899
Q ss_pred EEeehhhhhchhhhhccCccEEEEcCcccc--CChh-----hHHHHHHHh-cccceEEEEeccCC
Q 000160 559 ITTYRLIIQDSKVFKRKKWKYLILDEAHLI--KNWK-----SQRWQTLLN-FNSKRRILLTGTPL 615 (1992)
Q Consensus 559 ITSYe~l~qD~~~f~r~~W~~LILDEAH~I--KN~~-----Sq~~qaLl~-L~a~rRLLLTGTPL 615 (1992)
|-|...+..- -.+..+|||||=|.- |... ..-.-.++. ...-..+|-|+||-
T Consensus 245 iGtRSAvFaP-----~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 245 VGTRSAVFAP-----VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EEcceeEEec-----cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 9998877432 125689999999953 3221 111111121 23335677799995
No 181
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.62 E-value=5.9 Score=54.13 Aligned_cols=129 Identities=16% Similarity=0.266 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
-.|+.++..-+......|..|||-|-....-..|...|...|+++..|+-.-. .|.+-+-.+... ..-| -++|.-+
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~-~gaV-TiATNMA 487 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQ-PGAV-TIATNMA 487 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCC-CCcc-ccccccc
Confidence 47999999999999999999999999999999999999999999988877665 555555555321 1223 4678889
Q ss_pred ccccCCc-cCC----------EEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1075 GVGINLV-GAD----------TVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1075 G~GLNLT-~Ad----------tVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
|.|-++. +.+ +||=-.-.=+--.|-|--||++|.|- --+..+.| |.|..++++
T Consensus 488 GRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD-pG~S~F~l----SleD~L~r~ 551 (822)
T COG0653 488 GRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD-PGSSRFYL----SLEDDLMRR 551 (822)
T ss_pred cCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC-cchhhhhh----hhHHHHHHH
Confidence 9998874 333 45655555556677899999999993 22344443 345555444
No 182
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=94.49 E-value=0.036 Score=71.50 Aligned_cols=72 Identities=26% Similarity=0.478 Sum_probs=56.3
Q ss_pred CCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
..|.|+++|++.|..+|-+.|..|..|+.+| .|+|.+|+.|||.++..... .+.|
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l------------gr~P~~crd~wr~~~~~g~~-----------~~r~-- 437 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL------------GRMPMDCRDRWRQYVKCGSK-----------RNRG-- 437 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcccHHHHHHHH------------ccCcHHHHHHHHHhhccccc-----------cccC--
Confidence 5789999999999999999999999999988 28999999999999864322 1111
Q ss_pred ceeEeechHHHHHHHHHHHhc
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQ 1689 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~ 1689 (1992)
.-|-+..+.||.++.+.
T Consensus 438 ----~Ws~eEe~~Llk~V~~~ 454 (607)
T KOG0051|consen 438 ----AWSIEEEEKLLKTVNEM 454 (607)
T ss_pred ----cchHHHHHHHHHHHHHH
Confidence 23445567788888543
No 183
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.21 E-value=0.098 Score=61.57 Aligned_cols=166 Identities=19% Similarity=0.214 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHccCccEEEEcCCCChHHHH-HHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHCC--CCeE
Q 000160 457 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIM-TIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWCP--AFKI 532 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~~lgGILADEMGLGKTIQ-tIALLa~La~ekg~~GP~LIVVPtSL-L~NWe~EfkKw~P--~lKV 532 (1992)
.-|..++--++. +.+.|.-..-|.|||.+ +|+++-.+.... ..--.||+.|+.- -.|-..-+.-... +.++
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~-r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ 126 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISV-RETQALILSPTRELAVQIQKVILALGDYMNVQC 126 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeeccccc-ceeeEEEecChHHHHHHHHHHHHHhcccccceE
Confidence 346666655544 77889999999999975 455544332211 1124799999964 4444444444432 3566
Q ss_pred EEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc--hhhhhccCccEEEEcCccccC--ChhhHHHHHHHhcc-cceE
Q 000160 533 LTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLIK--NWKSQRWQTLLNFN-SKRR 607 (1992)
Q Consensus 533 L~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD--~~~f~r~~W~~LILDEAH~IK--N~~Sq~~qaLl~L~-a~rR 607 (1992)
....|...-....+. .. .+.|||.-|...+..- ...++-+..+++|||||.-+- .++.+.+.....|. .-..
T Consensus 127 hacigg~n~gedikk--ld-~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qv 203 (400)
T KOG0328|consen 127 HACIGGKNLGEDIKK--LD-YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQV 203 (400)
T ss_pred EEEecCCccchhhhh--hc-ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceE
Confidence 666665432211111 11 3568998888877653 345666788999999999885 47899999999886 6789
Q ss_pred EEEeccCCCCChHHHHHHHHHhCCCCC
Q 000160 608 ILLTGTPLQNDLMELWSLMHFLMPHIF 634 (1992)
Q Consensus 608 LLLTGTPLQNsL~ELwSLL~FL~P~if 634 (1992)
+++|+|- ..|+.-+..+.|+++.
T Consensus 204 v~~SATl----p~eilemt~kfmtdpv 226 (400)
T KOG0328|consen 204 VLVSATL----PHEILEMTEKFMTDPV 226 (400)
T ss_pred EEEeccC----cHHHHHHHHHhcCCce
Confidence 9999994 4577778888888753
No 184
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.09 E-value=0.038 Score=68.97 Aligned_cols=50 Identities=32% Similarity=0.641 Sum_probs=44.0
Q ss_pred CCCCCChhhhHHHHHHHHhcCCC-hhHHHHHhhccccCccccccccCchhhHHHHHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPN-WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1649 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~n-w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1649 (1992)
.++.|...||++|.|-|-.||.| |.-|+-.| ..-+++||+-||-+.++-.
T Consensus 6 kggvwrntEdeilkaav~kyg~nqws~i~sll-----------~~kt~rqC~~rw~e~ldp~ 56 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGKNQWSRIASLL-----------NRKTARQCKARWEEWLDPA 56 (617)
T ss_pred ecceecccHHHHHHHHHHHcchHHHHHHHHHH-----------hhcchhHHHHHHHHHhCHH
Confidence 47899999999999999999998 99999988 3467999999999877543
No 185
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.06 E-value=0.52 Score=49.18 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=56.9
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCC
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKP 552 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~ 552 (1992)
+.+.+|.-+.|.|||..+-.++..+. . ...+++++........+......+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~-~--~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------ 71 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF-R--PGAPFLYLNASDLLEGLVVAELFGHF------------------------ 71 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh-c--CCCCeEEEehhhhhhhhHHHHHhhhh------------------------
Confidence 55678899999999976665555543 1 12355555444444444333222110
Q ss_pred CCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChh-hHHHHHHHhc------ccceEEEEeccCCCC
Q 000160 553 NSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWK-SQRWQTLLNF------NSKRRILLTGTPLQN 617 (1992)
Q Consensus 553 ~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~-Sq~~qaLl~L------~a~rRLLLTGTPLQN 617 (1992)
..... ...........|||||+|++.... ......+..+ ....++++|+++...
T Consensus 72 ---------~~~~~--~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 72 ---------LVRLL--FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred ---------hHhHH--HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 00000 011122346799999999883322 2333334443 245678888887654
No 186
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=94.04 E-value=0.072 Score=64.17 Aligned_cols=57 Identities=33% Similarity=0.567 Sum_probs=44.5
Q ss_pred CcccCCCCC--CCCccchhhhHHHHhhcchHHHHHHHHHhhcCCCCChHHHHhhhcccc
Q 000160 138 DEEYDVHSE--DESEDDEHTIEEDEALITEEERKEELEALHNETDIPLQELLKRYAVDK 194 (1992)
Q Consensus 138 D~ef~~~~~--ee~eDDE~TIeeeE~~~~~~~~~~El~~L~~E~elpleeLl~~y~~~~ 194 (1992)
|-+|.+..+ ..+.|||.|++++|-...+.....||+.|++|++||+++||..|.+.-
T Consensus 19 Dh~f~p~admlv~dfdde~tleEeel~d~e~~~e~ei~~l~re~dmp~~ella~yg~~a 77 (445)
T KOG4329|consen 19 DHTFEPTADMLVNDFDDEATLEEEELADMEAKAEDEIETLRRESDMPIRELLALYGYTA 77 (445)
T ss_pred cccccccHHHHhcchhhhccccHhhccCccchhhHHHHHHHHhcCCcHHHHHHHhcccc
Confidence 455553322 345799999997666666667888999999999999999999998753
No 187
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=93.97 E-value=0.45 Score=60.20 Aligned_cols=60 Identities=15% Similarity=0.043 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
..+|-|..-..=+..-.+.+..|+|-...|.|||+.-++|+..........-.-||-|-.
T Consensus 16 ~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred ccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 357878665555555567788999999999999999999988665554433334555543
No 188
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=93.85 E-value=0.2 Score=70.93 Aligned_cols=135 Identities=19% Similarity=0.135 Sum_probs=70.7
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH-HHHHHHHHHHC--CCCeEEEEeCchhHHHHhhh
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM-LNWETEFLKWC--PAFKILTYFGSAKERKFKRQ 547 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL-~NWe~EfkKw~--P~lKVL~Y~Gs~keRk~kr~ 547 (1992)
..+...||+-++|.|||-|.=-++... ..+..|.+++.-|--+. .....-+..-. +--..+-|. ..-+.+
T Consensus 80 ~~~~vvii~g~TGSGKTTqlPq~lle~--~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~-vR~~~~---- 152 (1283)
T TIGR01967 80 AENQVVIIAGETGSGKTTQLPKICLEL--GRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK-VRFHDQ---- 152 (1283)
T ss_pred HhCceEEEeCCCCCCcHHHHHHHHHHc--CCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE-EcCCcc----
Confidence 446678999999999999875444432 12323333333365442 22222222211 111222221 111110
Q ss_pred ccCCCCCceEEEEeehhhhhchhh-hhccCccEEEEcCcc-ccCChhhHH--HHHHHhcc-cceEEEEeccCC
Q 000160 548 GWLKPNSFHVCITTYRLIIQDSKV-FKRKKWKYLILDEAH-LIKNWKSQR--WQTLLNFN-SKRRILLTGTPL 615 (1992)
Q Consensus 548 gw~k~~~fdVVITSYe~l~qD~~~-f~r~~W~~LILDEAH-~IKN~~Sq~--~qaLl~L~-a~rRLLLTGTPL 615 (1992)
....-.|.++|...+.+.... -.-..+++||||||| +.-|..-.. .+.++... .-+.+++|+|.-
T Consensus 153 ---~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld 222 (1283)
T TIGR01967 153 ---VSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATID 222 (1283)
T ss_pred ---cCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcC
Confidence 112456889999888765432 012368999999999 455543322 12222222 346799999973
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.80 E-value=0.17 Score=63.12 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=52.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH-HHHHHC-CCCeEEEEeCchhHHHHhhhccCCCCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET-EFLKWC-PAFKILTYFGSAKERKFKRQGWLKPNS 554 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~-EfkKw~-P~lKVL~Y~Gs~keRk~kr~gw~k~~~ 554 (1992)
|+--..|.|||+.++.++..+.. .......+++|+...+.+... .|.+-. +..
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~------------------------ 59 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKYNPKL------------------------ 59 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhcccch------------------------
Confidence 44556999999999999988821 122345678888776666544 443322 110
Q ss_pred ceEEEEeehhhhhchh--hhhccCccEEEEcCccccCC
Q 000160 555 FHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN 590 (1992)
Q Consensus 555 fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN 590 (1992)
....+.....+.+... ......+++|||||||++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1111222222222211 12335689999999999976
No 190
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.74 E-value=0.16 Score=62.86 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=84.6
Q ss_pred CCChHHHHHHH-HHHHHHHhcCCCCcEEEEecCC-cHHHH---HHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCce
Q 000160 482 MGLGKTIMTIA-MLAHLACEKGIWGPHLIVVPTS-VMLNW---ETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 556 (1992)
Q Consensus 482 MGLGKTIQtIA-LLa~La~ekg~~GP~LIVVPtS-LL~NW---e~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fd 556 (1992)
+|.|||..-+. .+.+|+......-..||+.|+. |..|- ..++-++..--.++.|+|...+.+..... ...|
T Consensus 67 tgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~----~npD 142 (529)
T KOG0337|consen 67 TGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN----ENPD 142 (529)
T ss_pred cCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc----cCCC
Confidence 78999975432 2333433221223679999995 55554 44444544334456788888777654321 3578
Q ss_pred EEEEeehhhhhchh--hhhccCccEEEEcCccccC--ChhhHHHHHHHhcc-cceEEEEeccC
Q 000160 557 VCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIK--NWKSQRWQTLLNFN-SKRRILLTGTP 614 (1992)
Q Consensus 557 VVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IK--N~~Sq~~qaLl~L~-a~rRLLLTGTP 614 (1992)
|+|.|...+..-.. .+.-....|||+|||.+|- .|.-+..+.+..+. +...+++|||-
T Consensus 143 ii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 143 IIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred EEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 99988887754321 1444567899999999984 36788888888884 45789999993
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.72 E-value=0.67 Score=63.23 Aligned_cols=136 Identities=24% Similarity=0.258 Sum_probs=84.0
Q ss_pred CCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCC
Q 000160 451 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAF 530 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~l 530 (1992)
....|.+-|+.++..+.. ..-.||.-..|.|||..+-+++..+.. .+...++++++|+........|.. +.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e~~----g~ 390 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGEVT----GL 390 (720)
T ss_pred cCCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHHhc----CC
Confidence 346799999999987643 446789999999999877666665543 332247888899987776555421 11
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEE
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILL 610 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLL 610 (1992)
...++| ...+|.. +.. .... .-.....++||||||+++-.. .....+..+....|++|
T Consensus 391 ~a~Tih--------~lL~~~~-~~~---------~~~~--~~~~~~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlil 448 (720)
T TIGR01448 391 TASTIH--------RLLGYGP-DTF---------RHNH--LEDPIDCDLLIVDESSMMDTW--LALSLLAALPDHARLLL 448 (720)
T ss_pred ccccHH--------HHhhccC-Ccc---------chhh--hhccccCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEE
Confidence 111111 1111111 000 0000 001245689999999999643 34555566777889999
Q ss_pred eccCCCC
Q 000160 611 TGTPLQN 617 (1992)
Q Consensus 611 TGTPLQN 617 (1992)
-|=|-|-
T Consensus 449 vGD~~QL 455 (720)
T TIGR01448 449 VGDTDQL 455 (720)
T ss_pred ECccccc
Confidence 9998873
No 192
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=93.48 E-value=0.078 Score=68.05 Aligned_cols=73 Identities=23% Similarity=0.389 Sum_probs=58.3
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
.|+|...||..|.++|.+||| ||.-|+=.+ .+|.+++|+.||-.... .+...+
T Consensus 20 ~gsw~~~EDe~l~~~vk~l~~nnws~vas~~-----------~~~~~kq~~~rw~~~ln-------------p~lk~~-- 73 (512)
T COG5147 20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLL-----------ISSTGKQSSNRWNNHLN-------------PQLKKK-- 73 (512)
T ss_pred CCCCCCcchhHHHHHHhhcccccHHHHHHHh-----------cccccccccchhhhhhc-------------hhcccc--
Confidence 579999999999999999999 699999988 55999999999932221 121222
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQEDN 1692 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~~~~ 1692 (1992)
.++++.-..|+++..+++..
T Consensus 74 ----~~~~eed~~li~l~~~~~~~ 93 (512)
T COG5147 74 ----NWSEEEDEQLIDLDKELGTQ 93 (512)
T ss_pred ----cccHHHHHHHHHHHHhcCch
Confidence 46788888899999888876
No 193
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.30 E-value=0.38 Score=59.18 Aligned_cols=146 Identities=20% Similarity=0.295 Sum_probs=92.4
Q ss_pred CccEEEEcCCCChHHHHHHH--HHH---HHHHhcCCCC-cEEEEecCC-cHHHHHHHHHHHC-CCCeEEEEeCchhHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIA--MLA---HLACEKGIWG-PHLIVVPTS-VMLNWETEFLKWC-PAFKILTYFGSAKERKF 544 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIA--LLa---~La~ekg~~G-P~LIVVPtS-LL~NWe~EfkKw~-P~lKVL~Y~Gs~keRk~ 544 (1992)
+...|-.-.+|.|||+.-+. ++. .........+ ..||..|+. |-.|-+.|.+++. .+++.+.+||..+....
T Consensus 257 G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eq 336 (629)
T KOG0336|consen 257 GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQ 336 (629)
T ss_pred CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhH
Confidence 44557677899999975431 111 1111112223 368888985 6777888887764 56666666654432211
Q ss_pred hhhccCCCCCceEEEEeehhhhhc--hhhhhccCccEEEEcCccccCC--hhhHHHHHHHhcccceEEEEeccCCCCChH
Q 000160 545 KRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFNSKRRILLTGTPLQNDLM 620 (1992)
Q Consensus 545 kr~gw~k~~~fdVVITSYe~l~qD--~~~f~r~~W~~LILDEAH~IKN--~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ 620 (1992)
..+ -..+++++|.|...+..- .....-...-|||||||.++-. |.-+..+.|+.++..+-..||..-....+.
T Consensus 337 ie~---lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~Vr 413 (629)
T KOG0336|consen 337 IED---LKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVR 413 (629)
T ss_pred HHH---HhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHH
Confidence 111 013568999998877543 2223334578999999999865 678899999999998887777655554444
Q ss_pred H
Q 000160 621 E 621 (1992)
Q Consensus 621 E 621 (1992)
-
T Consensus 414 r 414 (629)
T KOG0336|consen 414 R 414 (629)
T ss_pred H
Confidence 3
No 194
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=93.17 E-value=0.27 Score=54.96 Aligned_cols=102 Identities=22% Similarity=0.239 Sum_probs=64.4
Q ss_pred hhCCCeEEEEeCchHHHHHHHHHHHHcC----CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc--ccccccCCcc
Q 000160 1009 KSDGHRALIFTQMTKMLDILEEFISLYG----YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR--SGGVGINLVG 1082 (1992)
Q Consensus 1009 ks~G~KVLIFSQ~t~mLDILe~~L~~~G----i~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTr--AGG~GLNLT~ 1082 (1992)
...+.++|||...-.+++.+...+...+ +.. ...+ ...+..++++|..+... +|+++. +.++|||+.+
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q~---~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQG---SKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EEST---CCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--EC
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhccccccee-eecC---cchHHHHHHHHHhccCe--EEEEEecccEEEeecCCC
Confidence 3456799999999999999999987654 322 2222 33789999999985443 456666 8899999986
Q ss_pred --CCEEEEecCCC-Chh-----------------------------hHHHHHHhhcccCCcCcEEE
Q 000160 1083 --ADTVIFYDSDW-NPA-----------------------------MDQQAQDRCHRIGQTREVHI 1116 (1992)
Q Consensus 1083 --AdtVIfyD~dW-NPa-----------------------------~d~QA~gRahRIGQTRdV~V 1116 (1992)
+..||+.-.|+ +|. ...||+||+.|-...+-+.|
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 77888888775 231 12688888888766444433
No 195
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=93.15 E-value=0.07 Score=53.09 Aligned_cols=59 Identities=22% Similarity=0.492 Sum_probs=43.2
Q ss_pred CCCChhhhHHHHHHHHh------cC--C------ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCC
Q 000160 1591 DVWLPQEDAILCAVVHE------YG--P------NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDN 1656 (1992)
Q Consensus 1591 ~~w~~~ed~~l~~~v~~------~g--~------nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~ 1656 (1992)
..|+..|-.+|..++.+ |+ + -|..||+.|. . .|..|+|.||+.||+.|..+|-.....+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~---~----~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~ 74 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELA---E----HGYNRTPEQCRNKWKNLKKKYKKIKDRN 74 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHH---H----HC----HHHHHHHHHHHHHHHHCSSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH---H----cCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999998888 32 2 3999999983 2 3678999999999999999998776544
No 196
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.98 E-value=0.38 Score=65.42 Aligned_cols=91 Identities=16% Similarity=0.291 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHH-cCCcEEEecCCCCHHHHHHHHHHHhcC---CCceEEEEeccc
Q 000160 998 LQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL-YGYTYMRLDGSTQPEERQTLMQRFNTN---PKIFLFILSTRS 1073 (1992)
Q Consensus 998 Lq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~-~Gi~y~RLDGsts~eqRq~lIerFN~D---~~ifVfLLSTrA 1073 (1992)
...+...|..+...+.++|||...-.++..+..+|.. .++. +.+.|.. .|.+++++|... +.--| |+.+.+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~V-L~g~~s 594 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSV-LFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeE-EEEecc
Confidence 4455555555544444577777777888888888753 3333 4445642 578899888642 22334 667789
Q ss_pred cccccCCcc--CCEEEEecCCC
Q 000160 1074 GGVGINLVG--ADTVIFYDSDW 1093 (1992)
Q Consensus 1074 GG~GLNLT~--AdtVIfyD~dW 1093 (1992)
..+||++.+ +..||+.=.|+
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccCCCCceEEEEEEcCCC
Confidence 999999977 67888887666
No 197
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=92.74 E-value=0.27 Score=65.79 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=92.0
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N-We~EfkKw~P~lK 531 (1992)
+.|-.+|+.++-.|. ++-..+.|--+-.|||+.|=..|+. +..++ .+++--.|--.+.| =-++|+.-+.+..
T Consensus 296 FelD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAial-aq~h~--TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIAL-AQKHM--TRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred CCccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHH-HHhhc--cceEecchhhhhccchHHHHHHhccccc
Confidence 557899999997664 4777899999999999998666553 33332 24566677655554 5677777665544
Q ss_pred EEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhh----chhhhhccCccEEEEcCccccCCh-hhHHHHHHHhcccc-
Q 000160 532 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQ----DSKVFKRKKWKYLILDEAHLIKNW-KSQRWQTLLNFNSK- 605 (1992)
Q Consensus 532 VL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~q----D~~~f~r~~W~~LILDEAH~IKN~-~Sq~~qaLl~L~a~- 605 (1992)
+..|.-.-. ....++|+|-++++. ....++. ...||+||.|+|.+- ..-.|.-+.-+-.+
T Consensus 369 --LlTGDvqin----------PeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 369 --LLTGDVQIN----------PEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred --eeecceeeC----------CCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceeeeeecccc
Confidence 344543221 234578888777654 3444555 456999999999774 34456655444332
Q ss_pred -eEEEEecc
Q 000160 606 -RRILLTGT 613 (1992)
Q Consensus 606 -rRLLLTGT 613 (1992)
.-+|||||
T Consensus 435 V~~IlLSAT 443 (1248)
T KOG0947|consen 435 VNFILLSAT 443 (1248)
T ss_pred ceEEEEecc
Confidence 56899999
No 198
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.64 E-value=0.13 Score=65.54 Aligned_cols=50 Identities=30% Similarity=0.680 Sum_probs=44.2
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1649 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1649 (1992)
++++|+++||..|.+-|.+||. .|.-|-..+ +. |+--|||+||-..+.+.
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v---Pn--------RSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV---PN--------RSDSQCRERYTNVLNRS 409 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhc---CC--------ccHHHHHHHHHHHHHHh
Confidence 5789999999999999999999 699999977 44 99999999998877654
No 199
>PRK04296 thymidine kinase; Provisional
Probab=92.62 E-value=0.5 Score=54.01 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP 512 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVP 512 (1992)
.++.-+||.|||..++.++..+... + .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~-g--~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER-G--MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc-C--CeEEEEec
Confidence 3667789999999998887766542 2 35666654
No 200
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=92.60 E-value=0.51 Score=61.15 Aligned_cols=151 Identities=21% Similarity=0.304 Sum_probs=89.7
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHH-------
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFL------- 524 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL-L~NWe~Efk------- 524 (1992)
..|-.-|+.++.+.... + .--|+--..|.|||.+..-+|..+...+ ..+||.+|+.+ +.|-.+-+.
T Consensus 184 ~~ln~SQk~Av~~~~~~--k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~~~~~~l~ 257 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINN--K-DLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLTHLKLNLV 257 (649)
T ss_pred ccccHHHHHHHHHHhcc--C-CceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhcccccchh
Confidence 45788999999887652 2 3346666799999999888887776543 57899999976 666555332
Q ss_pred ------HHCCC-----CeEEEEeCc--------h----------------hHHHH-------hhhccC---------CCC
Q 000160 525 ------KWCPA-----FKILTYFGS--------A----------------KERKF-------KRQGWL---------KPN 553 (1992)
Q Consensus 525 ------Kw~P~-----lKVL~Y~Gs--------~----------------keRk~-------kr~gw~---------k~~ 553 (1992)
+..+. +..+.-.+. . +.++. .|.... ...
T Consensus 258 R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~ 337 (649)
T KOG1803|consen 258 RVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIIS 337 (649)
T ss_pred hcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00000 001111110 0 00000 000000 012
Q ss_pred CceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCC
Q 000160 554 SFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQ 616 (1992)
Q Consensus 554 ~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQ 616 (1992)
...||++|-..... ..+++..|++||+|||-..- ..+.|-.++.-+ |+.|.|-|.|
T Consensus 338 n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQam--E~~cWipvlk~k---k~ILaGDp~Q 393 (649)
T KOG1803|consen 338 NSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQAM--EPQCWIPVLKGK---KFILAGDPKQ 393 (649)
T ss_pred ccceEEEeccchhh--hhhcccCCCEEEEehhhhhc--cchhhhHHhcCC---ceEEeCCccc
Confidence 33566666544433 34556779999999986543 466777777655 9999999988
No 201
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.38 E-value=0.5 Score=59.15 Aligned_cols=42 Identities=14% Similarity=0.315 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~e 500 (1992)
|...+..|...+..+. ..++.-..|+|||..+..+..++.|.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4555677777777665 46789999999999999999999884
No 202
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.16 E-value=0.88 Score=60.65 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC--CCcEEEEecCCcHHH-HHHHHHHHCCCCeEE
Q 000160 457 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI--WGPHLIVVPTSVMLN-WETEFLKWCPAFKIL 533 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~--~GP~LIVVPtSLL~N-We~EfkKw~P~lKVL 533 (1992)
+.|+.++...+. +.-.||.--.|.|||.++..++..+...... ...+++++||.--.. ...-+..-...+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999876655 4557888899999999998888877543222 135888999965443 33333322111110
Q ss_pred EEeCchhHHHHhhhccCCCCCceEEEEeehhhhh--chhhh-----hccCccEEEEcCccccCChhhHHHHHHHhcccce
Q 000160 534 TYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQ--DSKVF-----KRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKR 606 (1992)
Q Consensus 534 ~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~q--D~~~f-----~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~r 606 (1992)
...... ... .-+.|-+..+.. +...| ....+++||||||-++-. ......+..+....
T Consensus 223 ----~~~~~~--~~~-------~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al~~~~ 287 (586)
T TIGR01447 223 ----AEALIA--ALP-------SEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAKLLKALPPNT 287 (586)
T ss_pred ----chhhhh--ccc-------cccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHHHHHhcCCCC
Confidence 000000 000 001111111110 00011 123689999999999864 34555666677888
Q ss_pred EEEEeccCCC
Q 000160 607 RILLTGTPLQ 616 (1992)
Q Consensus 607 RLLLTGTPLQ 616 (1992)
|++|.|=|-|
T Consensus 288 rlIlvGD~~Q 297 (586)
T TIGR01447 288 KLILLGDKNQ 297 (586)
T ss_pred EEEEECChhh
Confidence 9999999877
No 203
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.08 E-value=0.74 Score=62.27 Aligned_cols=148 Identities=22% Similarity=0.188 Sum_probs=88.6
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~lK 531 (1992)
..|-.-|+.++...++- ...--|+.. .|.|||-+...||..|... | +.+|+.+=| |.+.|--.-++.+--.
T Consensus 668 ~~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~~-g--kkVLLtsyThsAVDNILiKL~~~~i~-- 739 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVAL-G--KKVLLTSYTHSAVDNILIKLKGFGIY-- 739 (1100)
T ss_pred hhcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHHc-C--CeEEEEehhhHHHHHHHHHHhccCcc--
Confidence 47889999999766542 222335554 8999997766666666543 2 478888877 6788888877776322
Q ss_pred EEEEeCchhHHHHhhhccC---------------CCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHH
Q 000160 532 ILTYFGSAKERKFKRQGWL---------------KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRW 596 (1992)
Q Consensus 532 VL~Y~Gs~keRk~kr~gw~---------------k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~ 596 (1992)
++. .|+...-...-+.+. ..+...||.+|-=-+ .+..|.+..|+|+|+|||-.|--+-
T Consensus 740 ~lR-LG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi--~~plf~~R~FD~cIiDEASQI~lP~---- 812 (1100)
T KOG1805|consen 740 ILR-LGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI--NHPLFVNRQFDYCIIDEASQILLPL---- 812 (1100)
T ss_pred eee-cCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC--CchhhhccccCEEEEccccccccch----
Confidence 222 233221111111111 112333444442222 2556888889999999997764332
Q ss_pred HHHHhcccceEEEEeccCCC
Q 000160 597 QTLLNFNSKRRILLTGTPLQ 616 (1992)
Q Consensus 597 qaLl~L~a~rRLLLTGTPLQ 616 (1992)
+|--|.--++..|-|-+.|
T Consensus 813 -~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 -CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred -hhhhhhhcceEEEeccccc
Confidence 2334455677888888776
No 204
>PHA02533 17 large terminase protein; Provisional
Probab=91.65 E-value=0.77 Score=60.48 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=82.6
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHH---HCC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLK---WCP 528 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N-We~EfkK---w~P 528 (1992)
..|+|+|..-+.+|. ..+.+ |+.=-=..|||..+.++++++++..+. .-+++++|+--... =-..++. -.|
T Consensus 58 f~L~p~Q~~i~~~~~---~~R~~-ii~~aRq~GKStl~a~~al~~a~~~~~-~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMH---KNRFN-ACNLSRQLGKTTVVAIFLLHYVCFNKD-KNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHh---cCeEE-EEEEcCcCChHHHHHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 568999999888763 22333 454557899999988888777774332 36777788521111 0023322 233
Q ss_pred CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-cc--c
Q 000160 529 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NS--K 605 (1992)
Q Consensus 529 ~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-~a--~ 605 (1992)
.+.-.......+. .-.+ +.++.-.++++ +....+.....++|+||+|.++++. ..+.++... .+ .
T Consensus 133 ~l~~~~i~~~~~~----~I~l-~NGS~I~~lss------~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~ 200 (534)
T PHA02533 133 DFLQPGIVEWNKG----SIEL-ENGSKIGAYAS------SPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRS 200 (534)
T ss_pred HHhhcceeecCcc----EEEe-CCCCEEEEEeC------CCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCC
Confidence 3210000000000 0000 11221112222 2233455667899999999999864 344444332 22 2
Q ss_pred eEEEEeccCC-CCChHHHHHHHH
Q 000160 606 RRILLTGTPL-QNDLMELWSLMH 627 (1992)
Q Consensus 606 rRLLLTGTPL-QNsL~ELwSLL~ 627 (1992)
.|++++.||- .|...++|.-..
T Consensus 201 ~r~iiiSTp~G~n~fye~~~~a~ 223 (534)
T PHA02533 201 SKIIITSTPNGLNHFYDIWTAAV 223 (534)
T ss_pred ceEEEEECCCchhhHHHHHHHHH
Confidence 4688888994 344555554433
No 205
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.62 E-value=0.5 Score=59.94 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=96.1
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH----HcCC----cEEEecCCCCHHHHHHHHHHHhcCCCce
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGY----TYMRLDGSTQPEERQTLMQRFNTNPKIF 1065 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~----~~Gi----~y~RLDGsts~eqRq~lIerFN~D~~if 1065 (1992)
.+.|+.....++.++...|-|+|-|+...++..+|-...+ .-|- ....+.|+-..++|.++-...-. ++.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKL- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-Cee-
Confidence 3678899999999999999999999999988776543322 1111 13445677777788777554332 344
Q ss_pred EEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHH
Q 000160 1066 LFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENI 1129 (1992)
Q Consensus 1066 VfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErI 1129 (1992)
+=|++|.+..+||++-+-|.||.+--++.-+...|-.||++|-. ++-.-...+....|+..-
T Consensus 585 ~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 585 CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN--KPSLAVYVAFLGPVDQYY 646 (1034)
T ss_pred eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC--CCceEEEEEeccchhhHh
Confidence 45789999999999999999999999999999999999999954 332222234445566543
No 206
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=91.42 E-value=0.64 Score=61.06 Aligned_cols=153 Identities=19% Similarity=0.409 Sum_probs=94.5
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~lK 531 (1992)
++|-|+|..++.-+ +++...+...-+-.|||+.+=-.||.-..++ .+++.-.|- +|-.|=-+||..=+.+
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 67899999998644 4566778877899999999876666554443 355666675 4444556676654433
Q ss_pred EEEEeCchhHHHHhhhccCCCCCceEEEEeehhhh----hchhhhhccCccEEEEcCccccCChh-hHHHHH-HHhc-cc
Q 000160 532 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLII----QDSKVFKRKKWKYLILDEAHLIKNWK-SQRWQT-LLNF-NS 604 (1992)
Q Consensus 532 VL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~----qD~~~f~r~~W~~LILDEAH~IKN~~-Sq~~qa-Ll~L-~a 604 (1992)
|....|.-. ..|+ ...+|+|-++++ +.....+.+.| ||+||.|+++... .-.|.- +.-+ ..
T Consensus 199 VGLMTGDVT---------InP~-ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 199 VGLMTGDVT---------INPD-ASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred cceeeccee---------eCCC-CceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEecccc
Confidence 223334321 1222 335555655554 44556666666 9999999998743 233432 2223 34
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcC
Q 000160 605 KRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCN 646 (1992)
Q Consensus 605 ~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~ 646 (1992)
-+-++||||- .+..+|.+|.+.
T Consensus 267 vr~VFLSATi--------------------PNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 267 VRFVFLSATI--------------------PNARQFAEWICH 288 (1041)
T ss_pred ceEEEEeccC--------------------CCHHHHHHHHHH
Confidence 4668899982 245678888863
No 207
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.38 E-value=0.9 Score=62.22 Aligned_cols=44 Identities=27% Similarity=0.441 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHccC-c-cE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 459 QHIGLDWLVTMYEKR-L-NG-ILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 459 Q~~GL~WLvslye~~-l-gG-ILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
|...+.-|.+.+..+ + .. ||.-+.|.|||..+-.|...+.|..+
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~ 67 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQG 67 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccC
Confidence 333334444444332 2 34 79999999999999999999988644
No 208
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=91.03 E-value=1.3 Score=61.69 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=59.9
Q ss_pred CCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHH-HH---HH
Q 000160 451 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWET-EF---LK 525 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS-LL~NWe~-Ef---kK 525 (1992)
.....|++|...+.-+...+..+..+++--.+|.|||+..+.-+...+. ..++++|.+|+. |..||.. ++ .+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~ 318 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNE 318 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 3456899999988887777777777788789999999887655444433 235899999985 5677644 44 44
Q ss_pred HCC-CCeEEEEeCc
Q 000160 526 WCP-AFKILTYFGS 538 (1992)
Q Consensus 526 w~P-~lKVL~Y~Gs 538 (1992)
.++ .+++.+..|.
T Consensus 319 ~~~~~~~~~~~kG~ 332 (850)
T TIGR01407 319 ILNFKINAALIKGK 332 (850)
T ss_pred HcCCCceEEEEEcc
Confidence 444 3667666663
No 209
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.03 E-value=1.1 Score=58.01 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHccCc-c--EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 458 YQHIGLDWLVTMYEKRL-N--GILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 458 YQ~~GL~WLvslye~~l-g--GILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
.|...+..|......+. + -|+.-..|.|||-.+..+...+.|..+
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~ 69 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENP 69 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccc
Confidence 35555555555444443 2 389999999999999999998888654
No 210
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=90.93 E-value=0.51 Score=57.08 Aligned_cols=26 Identities=46% Similarity=0.670 Sum_probs=22.0
Q ss_pred HHHHHhhcCCCCChHHHHhhhccccc
Q 000160 170 EELEALHNETDIPLQELLKRYAVDKV 195 (1992)
Q Consensus 170 ~El~~L~~E~elpleeLl~~y~~~~~ 195 (1992)
+++++|+.|+.|||.|||++|.+.-.
T Consensus 133 ed~a~l~EEa~~pl~ElL~rY~G~~~ 158 (542)
T KOG0699|consen 133 EDRADLIEEASVPLAELLKRYGGAGV 158 (542)
T ss_pred HHHHHHHHhccCcHHHHHHHhcCCCc
Confidence 45678999999999999999987543
No 211
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.20 E-value=1.2 Score=59.98 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHccCc--cE-EEEcCCCChHHHHHHHHHHHHHHhcCC
Q 000160 459 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKGI 503 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--gG-ILADEMGLGKTIQtIALLa~La~ekg~ 503 (1992)
|...+..|.+.+..+. +. ||.-.-|.|||..+..|...+.|..+.
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~ 68 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV 68 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCC
Confidence 4555555655555432 34 789999999999999999999887543
No 212
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=90.10 E-value=0.58 Score=59.48 Aligned_cols=126 Identities=25% Similarity=0.336 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHccCccEEEEcCCCChHHHH-HHHHHH---HHH----HhcCCCCcE-EEEecCC-cHHHHHHHHHHH
Q 000160 457 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIM-TIAMLA---HLA----CEKGIWGPH-LIVVPTS-VMLNWETEFLKW 526 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~~lgGILADEMGLGKTIQ-tIALLa---~La----~ekg~~GP~-LIVVPtS-LL~NWe~EfkKw 526 (1992)
|-|+.++--++ ++.+-|+--|+|.|||.- .|-||. .+. ..+..-||. +|++|+- |..|-+.|-.+|
T Consensus 270 pIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 270 PIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred hHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 44555554232 366788899999999932 222222 221 123445664 7778995 555678888887
Q ss_pred CC--CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc--hhhhhccCccEEEEcCccccC
Q 000160 527 CP--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLIK 589 (1992)
Q Consensus 527 ~P--~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD--~~~f~r~~W~~LILDEAH~IK 589 (1992)
.- +++++...|...-.. +++.-.-.++|+|.|...+... ...|-...-.|||+|||.++-
T Consensus 346 ~~~lg~r~vsvigg~s~EE---q~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmi 409 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGLSFEE---QGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI 409 (673)
T ss_pred cccccceEEEEecccchhh---hhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhh
Confidence 63 477777766543221 2222224688999999888654 234445567899999999864
No 213
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=89.98 E-value=0.15 Score=62.14 Aligned_cols=131 Identities=21% Similarity=0.307 Sum_probs=71.9
Q ss_pred CCCChHHHHHH-HHHH-HHHHhc-----CCCCcE-EEEecCCcH-HHHHHHHHHHC--------CCCeEEEEeCchhHHH
Q 000160 481 EMGLGKTIMTI-AMLA-HLACEK-----GIWGPH-LIVVPTSVM-LNWETEFLKWC--------PAFKILTYFGSAKERK 543 (1992)
Q Consensus 481 EMGLGKTIQtI-ALLa-~La~ek-----g~~GP~-LIVVPtSLL-~NWe~EfkKw~--------P~lKVL~Y~Gs~keRk 543 (1992)
=+|.|||++-. -+|+ .|..+. ..-||+ |||||+.-+ .|-..-+..++ |.++.+...|.-.-+.
T Consensus 215 fTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~e 294 (610)
T KOG0341|consen 215 FTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVRE 294 (610)
T ss_pred eecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHH
Confidence 38999997532 2221 111111 223665 999999644 34333333332 5666666666544332
Q ss_pred HhhhccCCCCCceEEEEeehhhhhch--hhhhccCccEEEEcCccccCCh--hhHHHHHHHhcccc-eEEEEeccC
Q 000160 544 FKRQGWLKPNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNFNSK-RRILLTGTP 614 (1992)
Q Consensus 544 ~kr~gw~k~~~fdVVITSYe~l~qD~--~~f~r~~W~~LILDEAH~IKN~--~Sq~~qaLl~L~a~-rRLLLTGTP 614 (1992)
.... -..+.|||+.|...+..-. ..+.----.|+.+|||.++-.. .--.......|+++ ..||.|+|-
T Consensus 295 ql~~---v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM 367 (610)
T KOG0341|consen 295 QLDV---VRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM 367 (610)
T ss_pred HHHH---HhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc
Confidence 2111 1246799999998775421 1122223579999999998653 33332333334554 568889983
No 214
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=89.75 E-value=1.9 Score=57.39 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHH----HHH-----HH
Q 000160 457 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWET----EFL-----KW 526 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS-LL~NWe~----Efk-----Kw 526 (1992)
|+=..-++-+...|.++...++++ =|-|||-.+..++++++...| -.++|++|.- ....--. -+. .|
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 344455778889999999999987 899999998888887765344 2577888852 2222222 222 56
Q ss_pred CCCC-eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc--c
Q 000160 527 CPAF-KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF--N 603 (1992)
Q Consensus 527 ~P~l-KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L--~ 603 (1992)
+|.. ++..+.|....- .|..++...+--++-....+.....+...+++||+|||+.|.. ..+.+++-+ .
T Consensus 249 fp~~~~iv~vkgg~E~I-----~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~---~~l~aIlP~l~~ 320 (752)
T PHA03333 249 FPEEFKIVTLKGTDENL-----EYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP---GALLSVLPLMAV 320 (752)
T ss_pred cCCCceEEEeeCCeeEE-----EEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH---HHHHHHHHHHcc
Confidence 6643 333333222100 0111100000000000111112334546789999999999976 334444433 2
Q ss_pred cceEEEEeccCCC
Q 000160 604 SKRRILLTGTPLQ 616 (1992)
Q Consensus 604 a~rRLLLTGTPLQ 616 (1992)
...++.+.-||-.
T Consensus 321 ~~~k~IiISS~~~ 333 (752)
T PHA03333 321 KGTKQIHISSPVD 333 (752)
T ss_pred CCCceEEEeCCCC
Confidence 4567777777753
No 215
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.59 E-value=1.9 Score=58.15 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=57.7
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHc-------CCcEEEecCCCCHHHHHHHHHHHhc---CCC--ceEE-EEecccccccc
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLY-------GYTYMRLDGSTQPEERQTLMQRFNT---NPK--IFLF-ILSTRSGGVGI 1078 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~-------Gi~y~RLDGsts~eqRq~lIerFN~---D~~--ifVf-LLSTrAGG~GL 1078 (1992)
.+.+|||-.+-.+++-+..|.... +.+-+. -+--+..+=.++|.+|.+ ++. --+| -+.-..-++||
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~-vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLV-VEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCce-eccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 445999999888999887776543 222222 222233455677888864 211 1122 33444668999
Q ss_pred CCcc--CCEEEEecCCCChhhHHHHH
Q 000160 1079 NLVG--ADTVIFYDSDWNPAMDQQAQ 1102 (1992)
Q Consensus 1079 NLT~--AdtVIfyD~dWNPa~d~QA~ 1102 (1992)
+... +.-||+.-.++=|.+|.|-.
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~V~ 665 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPRVK 665 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHHHH
Confidence 9954 77899999999999987743
No 216
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=89.47 E-value=1.4 Score=59.00 Aligned_cols=143 Identities=18% Similarity=0.158 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcHHHHHHH-HHHHCCCCeE
Q 000160 455 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVMLNWETE-FLKWCPAFKI 532 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg-~~GP~LIVVPtSLL~NWe~E-fkKw~P~lKV 532 (1992)
+-+.|++++.-.+. ..-.||.-..|.|||.++..+++.+....+ ....+++++|+.--..=..| +..-...+.+
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999975544 445788889999999998888887654322 22357888999755443333 2211111100
Q ss_pred EEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc-------hhhhhccCccEEEEcCccccCChhhHHHHHHHhcccc
Q 000160 533 LTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD-------SKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 605 (1992)
Q Consensus 533 L~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD-------~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~ 605 (1992)
....+. +.. .-+.|-|.++... +..-....+++||||||-++-. ...+..+..+...
T Consensus 229 -----~~~~~~-----~~~----~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~--~lm~~ll~al~~~ 292 (615)
T PRK10875 229 -----TDEQKK-----RIP----EEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL--PMMARLIDALPPH 292 (615)
T ss_pred -----chhhhh-----cCC----CchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccH--HHHHHHHHhcccC
Confidence 000000 000 0011112221110 0011224578999999999953 4455667778888
Q ss_pred eEEEEeccCCCC
Q 000160 606 RRILLTGTPLQN 617 (1992)
Q Consensus 606 rRLLLTGTPLQN 617 (1992)
.|++|-|=|-|-
T Consensus 293 ~rlIlvGD~~QL 304 (615)
T PRK10875 293 ARVIFLGDRDQL 304 (615)
T ss_pred CEEEEecchhhc
Confidence 999999998773
No 217
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=89.26 E-value=2.5 Score=57.68 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=27.8
Q ss_pred ceEEEEeehhhhhchhh-----hhccCccEEEEcCccccCC
Q 000160 555 FHVCITTYRLIIQDSKV-----FKRKKWKYLILDEAHLIKN 590 (1992)
Q Consensus 555 fdVVITSYe~l~qD~~~-----f~r~~W~~LILDEAH~IKN 590 (1992)
.+||||+|.++..|... |......++||||||++-.
T Consensus 220 AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 220 ADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred CCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 47999999999988642 2223467899999999864
No 218
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=88.67 E-value=6.7 Score=50.52 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=101.5
Q ss_pred ccchHHHHHH-HHHHHh--hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEe
Q 000160 994 DCGKLQELAI-LLRKLK--SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILS 1070 (1992)
Q Consensus 994 dSgKLq~L~~-LL~kLk--s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLS 1070 (1992)
...+++.... +|..+. ....++|||...---.-.|..+|+..++.|+.++..|+..+-..+-..|.. ++..+||.|
T Consensus 279 ~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~T 357 (442)
T PF06862_consen 279 PDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYT 357 (442)
T ss_pred hhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEE
Confidence 3456666655 666666 345799999876555566889999999999999999999999999999986 678888888
Q ss_pred cccc-ccccCCccCCEEEEecCCCChhhHHHHHHhhcccCC----cCcEEEEEEEeCC-C-HHHHHHHHHHH
Q 000160 1071 TRSG-GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQ----TREVHIYRLISES-T-IEENILKKANQ 1135 (1992)
Q Consensus 1071 TrAG-G~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQ----TRdV~VYRLIse~-T-IEErIlkra~q 1135 (1992)
=|.- =.=..+-|+.+||||-||-||.....-+.-...-.+ ..+..|.-|.++- . -=|+|.-....
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra 429 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERA 429 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHH
Confidence 7754 234467899999999999999888877755444332 3445665566652 2 22455544333
No 219
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.57 E-value=2.2 Score=60.04 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH--HHHH---HHHHC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN--WETE---FLKWC 527 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N--We~E---fkKw~ 527 (1992)
...|+-|..-.+-+...+..+...++=-.+|.|||+--+.-+...+.. ..+|++|-++|-.+.+ +..+ +++-+
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~--~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~ 333 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK--KEEPVVISTYTIQLQQQLLEKDIPLLQKIF 333 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc--cCCeEEEEcCCHHHHHHHHHhhHHHHHHHc
Confidence 567999999998888877777666666789999998765444443432 2357777778754443 4444 35555
Q ss_pred C-CCeEEEEeCc
Q 000160 528 P-AFKILTYFGS 538 (1992)
Q Consensus 528 P-~lKVL~Y~Gs 538 (1992)
| .+++.+.-|.
T Consensus 334 ~~~~~~~~lKGr 345 (928)
T PRK08074 334 PFPVEAALLKGR 345 (928)
T ss_pred CCCceEEEEEcc
Confidence 4 4666666553
No 220
>PF13892 DBINO: DNA-binding domain
Probab=88.47 E-value=0.53 Score=51.02 Aligned_cols=70 Identities=33% Similarity=0.473 Sum_probs=44.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhheee---ehhhhhHHHHHH------HHHh--hhhhhhhchhhhhhHH
Q 000160 6 SRGEKKLKEEEQRLRKVAVNISKDVKKFWMKIEKLVL---YKHQMEVDVRKK------KALD--KQLEFLLGQTERYSSM 74 (1992)
Q Consensus 6 ~~~er~~keEe~rlRriA~~iAkeV~~fw~~ieKvV~---~K~Q~~leekrK------KALd--~qL~fivgqTEkYS~~ 74 (1992)
++..|..|+-+.|- ..++||+-.||-..||... =|++-+..+.+| .+.+ .-|+||++|||-||-.
T Consensus 53 ~rs~k~~Kd~~~Ra----krl~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~e~~rq~~rl~fLl~QTElfsHF 128 (139)
T PF13892_consen 53 SRSQKNMKDTQLRA----KRLMREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKREAKRQQRRLNFLLTQTELFSHF 128 (139)
T ss_pred HhccccchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666664 4567899999999998765 222222222211 2222 4689999999999988
Q ss_pred HHHhh
Q 000160 75 LAENL 79 (1992)
Q Consensus 75 Lae~l 79 (1992)
+...+
T Consensus 129 ~~~k~ 133 (139)
T PF13892_consen 129 MQNKA 133 (139)
T ss_pred Hcccc
Confidence 85544
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.31 E-value=1.1 Score=46.07 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=31.1
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE 522 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~E 522 (1992)
.+.+|.-.+|.|||..+..++..+.... .+.++|.+......|...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~ 48 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQ 48 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHH
Confidence 3457888899999998888776654322 356777776655554433
No 222
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=88.29 E-value=1.9 Score=59.55 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHccC-c-c-EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 459 QHIGLDWLVTMYEKR-L-N-GILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 459 Q~~GL~WLvslye~~-l-g-GILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
|...+.-|.+.+..+ . . -||.-..|.|||..+..|...|.|..+
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~ 66 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEG 66 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccC
Confidence 333344444444432 2 3 478999999999999999999999754
No 223
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=88.00 E-value=0.88 Score=58.51 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=44.9
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1649 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1649 (1992)
+..||++||..|.||..-.|= ||.+|+.-| |+-|+.-||-+||+..+...
T Consensus 253 k~~WS~EE~E~L~AiA~A~~~~~W~~IA~~L----------gt~RS~yQC~~kF~t~~~~L 303 (939)
T KOG0049|consen 253 KEHWSNEEVEKLKALAEAPKFVSWPMIALNL----------GTNRSSYQCMEKFKTEVSQL 303 (939)
T ss_pred hhccChHHHHHHHHHHhccccccHHHHHHHh----------CCCcchHHHHHHHHHHHHHH
Confidence 789999999999999999997 999999977 78899999999999876543
No 224
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=87.78 E-value=1.5 Score=54.14 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM 516 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL 516 (1992)
+.--||..+++-|+. ....=..|.--.|.|||+-++|.-.+.-..++....++|-=|+--|
T Consensus 228 prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 228 PRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred cccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 355799999987764 3333356777899999999988766655566666665544454433
No 225
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=87.57 E-value=1.5 Score=54.83 Aligned_cols=136 Identities=19% Similarity=0.262 Sum_probs=76.4
Q ss_pred cEEEEcCCCChHHHHHH-HHHHHHHHhc----CCCCc-EEEEecCC-cHHHHHHHHH---HHCC-CCeEEEEeCchhHHH
Q 000160 475 NGILADEMGLGKTIMTI-AMLAHLACEK----GIWGP-HLIVVPTS-VMLNWETEFL---KWCP-AFKILTYFGSAKERK 543 (1992)
Q Consensus 475 gGILADEMGLGKTIQtI-ALLa~La~ek----g~~GP-~LIVVPtS-LL~NWe~Efk---Kw~P-~lKVL~Y~Gs~keRk 543 (1992)
+.+--.-+|.|||..-+ -+|-.+...+ +..|| .+|+||+- +..|-...|. .+|+ .++++-...+.....
T Consensus 58 DvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv 137 (569)
T KOG0346|consen 58 DVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV 137 (569)
T ss_pred ceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH
Confidence 34444569999997643 2333332222 22344 48899995 5555555554 4676 455555443332221
Q ss_pred HhhhccCCCCCceEEEEeehhhhhchhh---hhccCccEEEEcCccccCChhh--HHHHHHHhcc-cceEEEEecc
Q 000160 544 FKRQGWLKPNSFHVCITTYRLIIQDSKV---FKRKKWKYLILDEAHLIKNWKS--QRWQTLLNFN-SKRRILLTGT 613 (1992)
Q Consensus 544 ~kr~gw~k~~~fdVVITSYe~l~qD~~~---f~r~~W~~LILDEAH~IKN~~S--q~~qaLl~L~-a~rRLLLTGT 613 (1992)
.. .|. .+..+|||+|...+...... .......++|+|||..+-.|.- ..-.....|. .-..+|+|||
T Consensus 138 ~~--~~L-~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSAT 210 (569)
T KOG0346|consen 138 NS--VAL-MDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSAT 210 (569)
T ss_pred HH--HHH-ccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhh
Confidence 11 222 25678999999888765322 2334578999999998866532 2222223332 2345778887
No 226
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=87.34 E-value=3.1 Score=56.42 Aligned_cols=111 Identities=19% Similarity=0.322 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccc
Q 000160 998 LQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVG 1077 (1992)
Q Consensus 998 Lq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~G 1077 (1992)
......|+..| ..|++|-|||....+.++++.++...+.+++.++|..+..+ ++. =.+..|++-+| +-++|
T Consensus 269 ~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~---W~~~~VviYT~-~itvG 339 (824)
T PF02399_consen 269 TTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VES---WKKYDVVIYTP-VITVG 339 (824)
T ss_pred hhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccc---ccceeEEEEec-eEEEE
Confidence 34555566555 46889999999999999999999999999999998877552 232 35677876665 77788
Q ss_pred cCCcc--CCEEEEe--cCCCChhh--HHHHHHhhcccCCcCcEEEEE
Q 000160 1078 INLVG--ADTVIFY--DSDWNPAM--DQQAQDRCHRIGQTREVHIYR 1118 (1992)
Q Consensus 1078 LNLT~--AdtVIfy--D~dWNPa~--d~QA~gRahRIGQTRdV~VYR 1118 (1992)
|++-. -|.|+.| ....-|.| -.|.+||+-.++. +++.||.
T Consensus 340 ~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 340 LSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred eccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 88853 5777777 33455666 4899999999885 5566664
No 227
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.33 E-value=5.1 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~e 500 (1992)
-||.-..|+|||..+..|...+.|.
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3889999999999999999999884
No 228
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.22 E-value=4 Score=55.87 Aligned_cols=96 Identities=15% Similarity=0.221 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhh-CCCeEEEEeCchHHHHHHHHHHHHcCC-------cEEEecCCCCHHHHHHHHHHHhcC---CCceE
Q 000160 998 LQELAILLRKLKS-DGHRALIFTQMTKMLDILEEFISLYGY-------TYMRLDGSTQPEERQTLMQRFNTN---PKIFL 1066 (1992)
Q Consensus 998 Lq~L~~LL~kLks-~G~KVLIFSQ~t~mLDILe~~L~~~Gi-------~y~RLDGsts~eqRq~lIerFN~D---~~ifV 1066 (1992)
+..|..+|.++.. ....+|||...-..|+.+...+...|+ ..+.+-+... .+++.++++|... ++- .
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~g-a 584 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRG-A 584 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCc-e
Confidence 3455565555533 356788877777777777666654432 2333434322 5789999999752 222 2
Q ss_pred EEEec--cccccccCCcc--CCEEEEecCCC-Ch
Q 000160 1067 FILST--RSGGVGINLVG--ADTVIFYDSDW-NP 1095 (1992)
Q Consensus 1067 fLLST--rAGG~GLNLT~--AdtVIfyD~dW-NP 1095 (1992)
+|+++ ...++|||+.+ +..||++-.|+ ||
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCC
Confidence 45555 56789999987 78899998877 44
No 229
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.90 E-value=0.71 Score=59.48 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=58.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCcEEEEec-CCcHHHHHHHHHH-----HCCCCeEEEEeCchhHHHHhhhccC-CCC
Q 000160 481 EMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP-TSVMLNWETEFLK-----WCPAFKILTYFGSAKERKFKRQGWL-KPN 553 (1992)
Q Consensus 481 EMGLGKTIQtIALLa~La~ekg~~GP~LIVVP-tSLL~NWe~EfkK-----w~P~lKVL~Y~Gs~keRk~kr~gw~-k~~ 553 (1992)
.+|.|||+++.+||.++.. +|. ..+|..|- ++++..-..-|.. +.= -.++.|.|..-+-+. ...+. ..+
T Consensus 5 atgsgkt~~ma~lil~~y~-kgy-r~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikk-vn~fsehnd 80 (812)
T COG3421 5 ATGSGKTLVMAGLILECYK-KGY-RNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKK-VNNFSEHND 80 (812)
T ss_pred ccCCChhhHHHHHHHHHHH-hch-hhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeee-ecccCccCC
Confidence 4799999999999998754 454 46676665 5666655444321 110 011222222211111 11111 235
Q ss_pred CceEEEEeehhhhhchhh----------hhccCccEEEEcCccccC
Q 000160 554 SFHVCITTYRLIIQDSKV----------FKRKKWKYLILDEAHLIK 589 (1992)
Q Consensus 554 ~fdVVITSYe~l~qD~~~----------f~r~~W~~LILDEAH~IK 589 (1992)
...|+.||-+.+..|... |... --+++-||||+|.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~-klvfl~deahhln 125 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQ-KLVFLADEAHHLN 125 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhC-ceEEEechhhhhh
Confidence 678999999888766321 2221 2345669999983
No 230
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.78 E-value=0.48 Score=61.06 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHH-HHHHHHHhc---CCC-CcEEEEecC-CcHHHHHHHHHHHC--C
Q 000160 457 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIA-MLAHLACEK---GIW-GPHLIVVPT-SVMLNWETEFLKWC--P 528 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIA-LLa~La~ek---g~~-GP~LIVVPt-SLL~NWe~EfkKw~--P 528 (1992)
|-|..++-.++. +.+++-|--+|.|||+--+. ++.+|.... +.. -..+||.|+ .+..|-..|+.+.+ +
T Consensus 161 ~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~ 236 (593)
T KOG0344|consen 161 PIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDE 236 (593)
T ss_pred cccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCC
Confidence 344445544444 67889999999999764332 223333222 122 245999998 67788899999988 4
Q ss_pred C--CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhh----hhccCccEEEEcCccccCCh
Q 000160 529 A--FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV----FKRKKWKYLILDEAHLIKNW 591 (1992)
Q Consensus 529 ~--lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~----f~r~~W~~LILDEAH~IKN~ 591 (1992)
+ +++..+....... ...+......++++|.|...+...... +.-....++|+|||..+.+.
T Consensus 237 ~t~~~a~~~~~~~~~~--qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 237 GTSLRAAQFSKPAYPS--QKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred CCchhhhhcccccchh--hccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 3 3333332221111 122222234688999999887765432 22234567999999999776
No 231
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=86.64 E-value=4.2 Score=54.73 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHccCc--c-EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 459 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--g-GILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
|...+..|.+.+..+. . .|+.-..|.|||..+..|...+.|..+
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~ 67 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETG 67 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccC
Confidence 4444455555554433 2 478999999999999999999999643
No 232
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=86.26 E-value=1.5 Score=55.58 Aligned_cols=86 Identities=21% Similarity=0.367 Sum_probs=62.9
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCC--------------
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPD-------------- 1655 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~-------------- 1655 (1992)
...|+.+||..|.-+...+-+.|..|+|+| .|.+.+|-+||-.|+..++.-.-.
T Consensus 59 ~tews~eederlLhlakl~p~qwrtIa~i~------------gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ 126 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPTQWRTIADIM------------GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEI 126 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCCccchHHHHh------------hhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcC
Confidence 678999999999999999999999999988 389999999999999987754322
Q ss_pred CCccccccccCcccee-EeechHHHHHHHHHHHhccc
Q 000160 1656 NSINEKTSNVGSGKAL-LKVTEDNVRTLLNVAAEQED 1691 (1992)
Q Consensus 1656 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 1691 (1992)
+|++++.. ++-. ++..||.--||-..-+.+-|
T Consensus 127 ePn~e~~~----aRpd~~dmdEde~eMl~eaRarlaN 159 (617)
T KOG0050|consen 127 EPNQETNP----ARPDGFDMDEDEGEMLSEARARLAN 159 (617)
T ss_pred CCcccccc----ccCCcccchHHHHHHHHHHHHHHhc
Confidence 12333331 1111 45667777777666555544
No 233
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=86.14 E-value=1.6 Score=58.03 Aligned_cols=133 Identities=19% Similarity=0.183 Sum_probs=75.2
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHH--h-cCCCCcEEEEecCCcH-----HHHHHHHHHHCCCCeEE-EEeCchhH
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLAC--E-KGIWGPHLIVVPTSVM-----LNWETEFLKWCPAFKIL-TYFGSAKE 541 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~--e-kg~~GP~LIVVPtSLL-----~NWe~EfkKw~P~lKVL-~Y~Gs~ke 541 (1992)
..+.-.|+|-|+|.|||-|.=-||..... . ....|-+=|-=|-.|. ..-..|+..+-...... .|.|+..
T Consensus 269 n~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~- 347 (1172)
T KOG0926|consen 269 NENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIG- 347 (1172)
T ss_pred hcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccccC-
Confidence 34666899999999999999887754211 1 1112223333454332 12344555532222222 2333322
Q ss_pred HHHhhhccCCCCCceEEEEeehhhhhchh-hhhccCccEEEEcCccccCChhh---------------HHHHHHHhcccc
Q 000160 542 RKFKRQGWLKPNSFHVCITTYRLIIQDSK-VFKRKKWKYLILDEAHLIKNWKS---------------QRWQTLLNFNSK 605 (1992)
Q Consensus 542 Rk~kr~gw~k~~~fdVVITSYe~l~qD~~-~f~r~~W~~LILDEAH~IKN~~S---------------q~~qaLl~L~a~ 605 (1992)
..-.|-.+|-..+++... -|.-.++..|||||||-= +.+| ++++.=+.++.-
T Consensus 348 -----------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~~~kpL 415 (1172)
T KOG0926|consen 348 -----------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQCQIKPL 415 (1172)
T ss_pred -----------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHHHhhhhcccCce
Confidence 234577888888888754 466778999999999952 2222 222222223344
Q ss_pred eEEEEeccCCC
Q 000160 606 RRILLTGTPLQ 616 (1992)
Q Consensus 606 rRLLLTGTPLQ 616 (1992)
+.++||||-=-
T Consensus 416 KLIIMSATLRV 426 (1172)
T KOG0926|consen 416 KLIIMSATLRV 426 (1172)
T ss_pred eEEEEeeeEEe
Confidence 67899999543
No 234
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.98 E-value=3.2 Score=55.55 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=29.1
Q ss_pred HHHHHHHHHccCc--cE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 462 GLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 462 GL~WLvslye~~l--gG-ILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
.+.-|.+.+..+. .+ ||.-..|.|||-.+.++...+.|..+
T Consensus 23 vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~ 66 (702)
T PRK14960 23 VSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 66 (702)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcC
Confidence 3444444444432 34 89999999999999998888888653
No 235
>PLN03025 replication factor C subunit; Provisional
Probab=85.92 E-value=7.6 Score=48.03 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHccC--ccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 459 QHIGLDWLVTMYEKR--LNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 459 Q~~GL~WLvslye~~--lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
|...+.+|......+ .+-||.-..|.|||-.+.++...+.|
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 334444444433322 35689999999999999988877765
No 236
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=85.91 E-value=2.6 Score=57.08 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHHHHHccCc-cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCCe
Q 000160 454 PLREYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAFK 531 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~l-gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS-LL~NWe~EfkKw~P~lK 531 (1992)
.....|..++.-|+.....+. .-+|.--.|.|||+.+..++..+ ..|+|||+|.- +..||..||+.|+|.-.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~------~~p~Lvi~~n~~~A~ql~~el~~f~p~~~ 82 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV------NRPTLVIAHNKTLAAQLYNEFKEFFPENA 82 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHhCCCCe
Confidence 345678888888887765443 44677779999999987776543 25999999985 56789999999999755
Q ss_pred EEEE
Q 000160 532 ILTY 535 (1992)
Q Consensus 532 VL~Y 535 (1992)
|..|
T Consensus 83 V~~f 86 (655)
T TIGR00631 83 VEYF 86 (655)
T ss_pred EEEE
Confidence 5444
No 237
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=85.74 E-value=3.7 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La 498 (1992)
+-||.-..|.|||..+-++...+.
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 558999999999988877665553
No 238
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=85.72 E-value=5.2 Score=55.64 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH--HHHHH---HHH
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN--WETEF---LKW 526 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N--We~Ef---kKw 526 (1992)
....|+-|..-.+-+...+..+...|+--.+|.|||+.-+.-+ +... ...+++|.+|+..+.+ +..++ .++
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~--l~~~--~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~ 318 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPL--LAQS--DQRQIIVSVPTKILQDQIMAEEVKAIQEV 318 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHH--HHhc--CCCcEEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 3578999999888888877777777777899999997654332 2211 2358999999976554 44444 444
Q ss_pred CCCCeEEEEeC
Q 000160 527 CPAFKILTYFG 537 (1992)
Q Consensus 527 ~P~lKVL~Y~G 537 (1992)
+ ++++.+..|
T Consensus 319 ~-~~~~~~~kg 328 (820)
T PRK07246 319 F-HIDCHSLKG 328 (820)
T ss_pred c-CCcEEEEEC
Confidence 4 345554444
No 239
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.61 E-value=4.5 Score=54.05 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHccCc--c-EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 458 YQHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 458 YQ~~GL~WLvslye~~l--g-GILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
.|...+..|.+....+. + -|+.-..|.|||-.+.+|...+.|..+
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~ 64 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQG 64 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 36666666666655432 3 378999999999999999999998654
No 240
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=85.35 E-value=11 Score=42.10 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHccCc--c-EEEEcCCCChHHHHHHHHHHHHHHhcCC
Q 000160 459 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEKGI 503 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--g-GILADEMGLGKTIQtIALLa~La~ekg~ 503 (1992)
|...+..|..++.++. . -|+.-.-|.||+-.+.+++..+.|....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 5566677777776653 3 4888899999999999999999987654
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.86 E-value=5.9 Score=45.91 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=29.7
Q ss_pred cCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHH
Q 000160 472 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 520 (1992)
Q Consensus 472 ~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe 520 (1992)
...+.+|.-+.|.|||..+.++...+.. . +..++.+..+.+..|.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~-~---~~~~~~i~~~~~~~~~ 81 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE-R---GKSAIYLPLAELAQAD 81 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-c---CCcEEEEeHHHHHHhH
Confidence 3456678899999999988877665432 2 2345666665555543
No 242
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=84.58 E-value=6.6 Score=53.07 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
|...+..|...+..+. +-||.-..|+|||..+.+|...+.|..+
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~ 67 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENA 67 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCC
Confidence 4444444544444332 3488999999999999999998888654
No 243
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.57 E-value=3.5 Score=54.35 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHccCc--cE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 459 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--gG-ILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
|...+..|......+. +. ++.-+.|.|||-.+-+|+..+.|..+
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~ 65 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQG 65 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCC
Confidence 4444455554444443 22 78999999999999999999888654
No 244
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=84.35 E-value=5.9 Score=54.15 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=85.2
Q ss_pred cCccEEEEcCCCChHHHHHHHHHHH-HHHhcCCCCcEEEEecCCcHHH-HHHHHHHHC--CCCeEEEEeCchhHHHHhhh
Q 000160 472 KRLNGILADEMGLGKTIMTIAMLAH-LACEKGIWGPHLIVVPTSVMLN-WETEFLKWC--PAFKILTYFGSAKERKFKRQ 547 (1992)
Q Consensus 472 ~~lgGILADEMGLGKTIQtIALLa~-La~ekg~~GP~LIVVPtSLL~N-We~EfkKw~--P~lKVL~Y~Gs~keRk~kr~ 547 (1992)
.+.|.|.+-.++-|||+.+=-+++. +.|.+ +..|.|.|--.+.+ =..++.-+. -|+.|--|+|.....+
T Consensus 239 e~~nliys~Pts~gktlvaeilml~~~l~~r---r~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~---- 311 (1008)
T KOG0950|consen 239 ERKNLIYSLPTSAGKTLVAEILMLREVLCRR---RNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK---- 311 (1008)
T ss_pred cccceEEeCCCccchHHHHHHHHHHHHHHHh---hceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCC----
Confidence 4678999999999999987544443 33332 35788888755444 333344433 2688888887542211
Q ss_pred ccCCCCCceEEEEeehhhhhchhhhhc----cCccEEEEcCccccCChh------hHHHHHHHhccc--ceEEEEeccCC
Q 000160 548 GWLKPNSFHVCITTYRLIIQDSKVFKR----KKWKYLILDEAHLIKNWK------SQRWQTLLNFNS--KRRILLTGTPL 615 (1992)
Q Consensus 548 gw~k~~~fdVVITSYe~l~qD~~~f~r----~~W~~LILDEAH~IKN~~------Sq~~qaLl~L~a--~rRLLLTGTPL 615 (1992)
....-+|.|.|-+....+...+-. ..-..||+||-|.|.... -...+.+..-.. -+.+++|+|-.
T Consensus 312 ---~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~ 388 (1008)
T KOG0950|consen 312 ---RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIP 388 (1008)
T ss_pred ---cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccC
Confidence 112446888888776555433221 235789999999995422 112223322222 24799999987
Q ss_pred CCChHHHH
Q 000160 616 QNDLMELW 623 (1992)
Q Consensus 616 QNsL~ELw 623 (1992)
.|.+-.-|
T Consensus 389 N~~lL~~~ 396 (1008)
T KOG0950|consen 389 NNSLLQDW 396 (1008)
T ss_pred ChHHHHHH
Confidence 66654433
No 245
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=84.28 E-value=3.6 Score=56.73 Aligned_cols=112 Identities=24% Similarity=0.292 Sum_probs=70.7
Q ss_pred CeEEEEeCchHHHHHHHHHHH----HcC---CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCE
Q 000160 1013 HRALIFTQMTKMLDILEEFIS----LYG---YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADT 1085 (1992)
Q Consensus 1013 ~KVLIFSQ~t~mLDILe~~L~----~~G---i~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~Adt 1085 (1992)
..||||-.-..-+..+...|. +.. +-...++++++..+.+.+..+-- ++++=+|++|..+-.+|.+-..-.
T Consensus 414 GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp--~g~RKIIlaTNIAETSITIdDVvy 491 (924)
T KOG0920|consen 414 GAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPP--KGTRKIILATNIAETSITIDDVVY 491 (924)
T ss_pred ceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCC--CCcchhhhhhhhHhhcccccCeEE
Confidence 478898766655555555543 333 56778899999877776644432 334445899999999888865544
Q ss_pred EE--------EecCCCCh-------hhHHHHHHhhcccCCcCcEEEEEEEeCCCHH
Q 000160 1086 VI--------FYDSDWNP-------AMDQQAQDRCHRIGQTREVHIYRLISESTIE 1126 (1992)
Q Consensus 1086 VI--------fyD~dWNP-------a~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1126 (1992)
|| .|||.-|- ..-+.|.-|.+|-|..++=..|+|.+..=.+
T Consensus 492 VIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 492 VIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYE 547 (924)
T ss_pred EEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhh
Confidence 43 56653221 1113444555555667888999999976443
No 246
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.20 E-value=8.6 Score=48.04 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=36.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHH-c--cCccEEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 447 FPFLLKFPLREYQHIGLDWLVTMY-E--KRLNGILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 447 vP~lLk~~LRpYQ~~GL~WLvsly-e--~~lgGILADEMGLGKTIQtIALLa~La~e 500 (1992)
+|..+.+ |+.|...|.-.+.-+ . ...+.+|.-..|.|||..+-+++.++...
T Consensus 13 ~p~~l~g--Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 13 VPDRIVH--RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCCCCC--cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4554444 899998877444332 2 23467889999999999998888877543
No 247
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=83.74 E-value=4.5 Score=50.36 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
.++|+|.....-++..-+-...-++.-..|.|||..+.+|...+.|..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 357888888887776422222346789999999999999999999964
No 248
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=83.49 E-value=5.3 Score=43.81 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=36.4
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCcc--CCEEEEecCCC
Q 000160 1039 YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG--ADTVIFYDSDW 1093 (1992)
Q Consensus 1039 y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~--AdtVIfyD~dW 1093 (1992)
.+.+-| ....+...+++.|....+. .+|+++.+.++|||+.+ +..||+.-.|+
T Consensus 25 ~i~~e~-~~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQG-EDGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeC-CChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 334434 3344578999999874332 34677777999999987 67788887554
No 249
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=83.35 E-value=2.4 Score=56.29 Aligned_cols=171 Identities=17% Similarity=0.145 Sum_probs=103.5
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHH-H
Q 000160 446 KFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETE-F 523 (1992)
Q Consensus 446 ~vP~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS-LL~NWe~E-f 523 (1992)
..|...+....|||+.-++-|-.-. .....+.--.-+|||...+.+|.+... ...+|+|+|.|+- ....|..+ |
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl 83 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSID--QDPGPMLYVQPTDDAAKDFSKERL 83 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEE--eCCCCEEEEEEcHHHHHHHHHHHH
Confidence 4566677889999999988765422 334566667889999988888777654 3458999999995 56667643 3
Q ss_pred H---HHCCCCeEEEEeCchh-HHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccC-------Chh
Q 000160 524 L---KWCPAFKILTYFGSAK-ERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK-------NWK 592 (1992)
Q Consensus 524 k---Kw~P~lKVL~Y~Gs~k-eRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IK-------N~~ 592 (1992)
. +-+|.++-++.-...+ .......... ++. .+.+..... ...|+.+..++||+||.-.+- +.-
T Consensus 84 ~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f-~gg-~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~ 157 (557)
T PF05876_consen 84 DPMIRASPVLRRKLSPSKSRDSGNTILYKRF-PGG-FLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPV 157 (557)
T ss_pred HHHHHhCHHHHHHhCchhhcccCCchhheec-CCC-EEEEEeCCC----CcccccCCcCEEEEechhhccccCccCCCHH
Confidence 3 3345544222210000 0000000000 112 233333322 345778889999999999873 123
Q ss_pred hHHHHHHHhcccceEEEEeccCCCCChHHHHHHH
Q 000160 593 SQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLM 626 (1992)
Q Consensus 593 Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL 626 (1992)
.........+...+++++..||......-++.++
T Consensus 158 ~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 158 ELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 4444445556677899999999987654555443
No 250
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.28 E-value=2.2 Score=51.51 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=77.4
Q ss_pred CCCChHHHHHH-HHHHHHHHhcCCCCcEEEEecCC-c---HHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCc
Q 000160 481 EMGLGKTIMTI-AMLAHLACEKGIWGPHLIVVPTS-V---MLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSF 555 (1992)
Q Consensus 481 EMGLGKTIQtI-ALLa~La~ekg~~GP~LIVVPtS-L---L~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~f 555 (1992)
--|.|||-.-+ -+|..+.. +...=-.+|+||+. + ..|-..++.+++. .++.+-.|...-|..... -.+..
T Consensus 130 KNGTGKT~a~~IP~Lekid~-~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~R---l~~~V 204 (459)
T KOG0326|consen 130 KNGTGKTAAYCIPVLEKIDP-KKNVIQAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMR---LNQTV 204 (459)
T ss_pred cCCCCCccceechhhhhcCc-cccceeEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceee---ecCce
Confidence 37899995422 22222211 22222469999985 3 3446778888875 788777776554432111 12568
Q ss_pred eEEEEeehhhhhchh--hhhccCccEEEEcCccccCC--hhhHHHHHHHhc-ccceEEEEecc
Q 000160 556 HVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNF-NSKRRILLTGT 613 (1992)
Q Consensus 556 dVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN--~~Sq~~qaLl~L-~a~rRLLLTGT 613 (1992)
|++|.|...+..-.. .-.-..-..+|+|||..+-. |..-.-+.+.-| +.+..+|.|||
T Consensus 205 H~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 205 HLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred EEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 999999987764322 11122457899999998865 334444445555 55667888888
No 251
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=83.15 E-value=0.9 Score=51.03 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=26.0
Q ss_pred CceEEEEeehhhhhchh--hhh--ccCccEEEEcCccccCC
Q 000160 554 SFHVCITTYRLIIQDSK--VFK--RKKWKYLILDEAHLIKN 590 (1992)
Q Consensus 554 ~fdVVITSYe~l~qD~~--~f~--r~~W~~LILDEAH~IKN 590 (1992)
..+|||++|..+..+.. .+. ...-.+|||||||+|-+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 46899999999987632 221 23446899999999954
No 252
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=83.13 E-value=9.1 Score=46.97 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHccCc-----cEEEEcCCCChHHHHHHHHHHHHHHhcCC---CCcEEEE-ecC-CcHHHHHHHHHH
Q 000160 456 REYQHIGLDWLVTMYEKRL-----NGILADEMGLGKTIMTIAMLAHLACEKGI---WGPHLIV-VPT-SVMLNWETEFLK 525 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~l-----gGILADEMGLGKTIQtIALLa~La~ekg~---~GP~LIV-VPt-SLL~NWe~EfkK 525 (1992)
+|-=..+++.|..++.... |-+|.-+.|.|||..+=-|.......... .-|+|+| +|+ .-....-..|-.
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 4445567777777665432 56778889999997554443321111111 1255444 343 344444444332
Q ss_pred HCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChh-hHH---HHHHHh
Q 000160 526 WCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWK-SQR---WQTLLN 601 (1992)
Q Consensus 526 w~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~-Sq~---~qaLl~ 601 (1992)
-... .|..+. +....-.+....|+..+-++|||||.|++-.-+ .+. ..+|+.
T Consensus 119 ~lga----P~~~~~--------------------~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~ 174 (302)
T PF05621_consen 119 ALGA----PYRPRD--------------------RVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKF 174 (302)
T ss_pred HhCc----ccCCCC--------------------CHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHH
Confidence 1100 011111 011222233467888999999999999974332 222 222333
Q ss_pred cccc--eEEEEeccC
Q 000160 602 FNSK--RRILLTGTP 614 (1992)
Q Consensus 602 L~a~--rRLLLTGTP 614 (1992)
|... --+.+.||+
T Consensus 175 L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 175 LGNELQIPIVGVGTR 189 (302)
T ss_pred HhhccCCCeEEeccH
Confidence 3222 235566775
No 253
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=82.88 E-value=4.6 Score=48.09 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHccCc-cEEEEcCCCChHHHHHHHHHHHHH
Q 000160 456 REYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~l-gGILADEMGLGKTIQtIALLa~La 498 (1992)
-+.+..++..+......+. ..+|.-+.|.|||..+-.++..+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3445556665544333333 467899999999987776655543
No 254
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=82.71 E-value=4.2 Score=55.19 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=60.0
Q ss_pred CCCChHHHHHHHHHHHHHHccCc-cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA 529 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~l-gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~ 529 (1992)
...|.++|...+.-++.....+. +.+|.--.|.|||+.+.+++..+ ..|+|||+|. ....+|..+|+.|+|.
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~~------~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIARL------QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 46789999999998877665442 45677778999998876655432 2589999999 4677899999999998
Q ss_pred CeEEEE
Q 000160 530 FKILTY 535 (1992)
Q Consensus 530 lKVL~Y 535 (1992)
..|+.|
T Consensus 84 ~~v~~f 89 (652)
T PRK05298 84 NAVEYF 89 (652)
T ss_pred CeEEEe
Confidence 666655
No 255
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=82.22 E-value=9 Score=47.73 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 455 LREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
++|+|...-.-|.+.+.++. .-++.-..|+||+..+.+|...+.|..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888887888877644 335789999999999999999999965
No 256
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=82.14 E-value=4.6 Score=54.85 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=72.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe-cCCcHHHHHHHHHHH-CCCCeEEEEeCchhHHHHhhhccCCCCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV-PTSVMLNWETEFLKW-CPAFKILTYFGSAKERKFKRQGWLKPNS 554 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV-PtSLL~NWe~EfkKw-~P~lKVL~Y~Gs~keRk~kr~gw~k~~~ 554 (1992)
++=-.||.|||-..|-.|.+... ...+.+|||. -.+++.+-..-|++. +++|. .|...... ......
T Consensus 53 vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv--~Y~d~~~~-------~i~~~~ 121 (824)
T PF02399_consen 53 VVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFV--NYLDSDDY-------IIDGRP 121 (824)
T ss_pred EEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcce--eeeccccc-------cccccc
Confidence 55667999999887776665432 2335678885 447777777766654 34444 44433211 122234
Q ss_pred ceEEEEeehhhhhchhhhhccCccEEEEcCccccCC-hh-------hHHHHHHHhc--ccceEEEEeccC
Q 000160 555 FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN-WK-------SQRWQTLLNF--NSKRRILLTGTP 614 (1992)
Q Consensus 555 fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN-~~-------Sq~~qaLl~L--~a~rRLLLTGTP 614 (1992)
++.+++..+.+.+....+- .+|+.|||||+-.+-+ +. ...+..+..+ ++++.+++-||-
T Consensus 122 ~~rLivqIdSL~R~~~~~l-~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLDGSLL-DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cCeEEEEehhhhhcccccc-cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 5666666666655433211 2399999999754322 11 1222333333 678888888873
No 257
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=82.09 E-value=3.5 Score=50.74 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHccCc--cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 460 HIGLDWLVTMYEKRL--NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 460 ~~GL~WLvslye~~l--gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
...+.+|......+. +.+|.-+.|.|||..+.++...+.+.. |+...+.++.
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~--~~~~~~~i~~ 74 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP--WENNFTEFNV 74 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc--cccceEEech
Confidence 334555555555554 678999999999999999887776532 3333444444
No 258
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.84 E-value=9.5 Score=50.33 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHccC-c-c-EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 459 QHIGLDWLVTMYEKR-L-N-GILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 459 Q~~GL~WLvslye~~-l-g-GILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
|...+..|.+.+..+ . + -|+.-..|.|||-.+-.+...+.|..+
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~ 67 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKG 67 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 455555666655443 2 3 378999999999999999999988654
No 259
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=81.82 E-value=1.6 Score=57.13 Aligned_cols=53 Identities=25% Similarity=0.486 Sum_probs=44.3
Q ss_pred CCCCCChhhhHHHHHHHH-------hc------------------CC-ChhHHHHHhhccccCccccccccCchhhHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVH-------EY------------------GP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERF 1642 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~-------~~------------------g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~ 1642 (1992)
..++|+-+|.+.|..+|. .| -+ ||.+||++| ..|++.|||+-|
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~-----------~TR~~~qCr~Kw 503 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEML-----------GTRSRIQCRYKW 503 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhh-----------cCCCcchHHHHH
Confidence 368999999999999993 55 12 799999977 559999999999
Q ss_pred HHHHHHHhhh
Q 000160 1643 RELIQRYILS 1652 (1992)
Q Consensus 1643 ~~~~~~~~~~ 1652 (1992)
-.||-+....
T Consensus 504 ~kl~~~~s~n 513 (607)
T KOG0051|consen 504 YKLTTSPSFN 513 (607)
T ss_pred HHHHhhHHhh
Confidence 9999876543
No 260
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.49 E-value=22 Score=45.48 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=70.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCC--cHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCC
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTS--VMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLK 551 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ekg-~~GP~LIVVPtS--LL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k 551 (1992)
.-+|.--.|.|||-++.-+.+++....+ ..+++++|.=.. .-..|+ ++.|+--+.+-+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv----------------- 236 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV----------------- 236 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce-----------------
Confidence 3467888999999877666655543321 123445544322 222233 566654222211
Q ss_pred CCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhh---HHHHHHHhcc--cceEEEEeccCCCCChHHHHHHH
Q 000160 552 PNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKS---QRWQTLLNFN--SKRRILLTGTPLQNDLMELWSLM 626 (1992)
Q Consensus 552 ~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~S---q~~qaLl~L~--a~rRLLLTGTPLQNsL~ELwSLL 626 (1992)
.++.+|..+......+ ...++||||++.+...... .....+.... ...-|.|++|-=+|.+.+.+.-+
T Consensus 237 -----~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 237 -----KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred -----EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 1122333333222222 4579999999998764322 2222222232 24678899998888888777655
Q ss_pred HHhC
Q 000160 627 HFLM 630 (1992)
Q Consensus 627 ~FL~ 630 (1992)
..+.
T Consensus 310 ~~~~ 313 (388)
T PRK12723 310 SPFS 313 (388)
T ss_pred cCCC
Confidence 5443
No 261
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=81.10 E-value=8.2 Score=49.32 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ek 501 (1992)
-|+.-..|.|||..+.+|...+.|..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 46899999999999999999998864
No 262
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=80.52 E-value=14 Score=44.35 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000160 455 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 523 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~Ef 523 (1992)
+.-.+...+.-++..|.++.|-+|--..|.|||..++|+...+. ..|. ++++|.=+.++.++...+
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~--sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGI--SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC--eEEEEEHHHHHHHHHHHH
Confidence 45555555655565666788889999999999999999887776 5543 455554445555555443
No 263
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.31 E-value=7.2 Score=52.44 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHccCc--cE-EEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 459 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--gG-ILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|...+..|.+.+..+. .. ||.-..|.|||..+.+|...+.|..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~ 66 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQG 66 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 5556666666665543 33 7899999999999999999998853
No 264
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.13 E-value=12 Score=47.41 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHccCc--cE-EEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 458 YQHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 458 YQ~~GL~WLvslye~~l--gG-ILADEMGLGKTIQtIALLa~La~ek 501 (1992)
-|...+..|.+.+..+. +. ||.-+.|.|||..+-++...+.|..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~ 66 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQN 66 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCC
Confidence 35555666666555432 34 7999999999999999888887754
No 265
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=79.57 E-value=5.6 Score=50.30 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhcCCC-------CcEEEEecCCcHHHHHHHHHHHCC
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKGIW-------GPHLIVVPTSVMLNWETEFLKWCP 528 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ekg~~-------GP~LIVVPtSLL~NWe~EfkKw~P 528 (1992)
|......|.+.+..+. .-++.-..|+|||..+.+|...+.|..... .+.|.+|+.+-.-.|.. ..-.|
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~--~~~HP 101 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA--AGAHG 101 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH--ccCCC
Confidence 5555666666665543 357899999999999999999999975321 23455666554444422 12236
Q ss_pred CCeEE
Q 000160 529 AFKIL 533 (1992)
Q Consensus 529 ~lKVL 533 (1992)
++.++
T Consensus 102 Dl~~i 106 (365)
T PRK07471 102 GLLTL 106 (365)
T ss_pred CeEEE
Confidence 65554
No 266
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=79.49 E-value=5 Score=55.41 Aligned_cols=132 Identities=19% Similarity=0.160 Sum_probs=70.6
Q ss_pred HHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-----HHHHHHHHHHHCCCCeEEEEeCchh
Q 000160 466 LVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-----MLNWETEFLKWCPAFKILTYFGSAK 540 (1992)
Q Consensus 466 Lvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL-----L~NWe~EfkKw~P~lKVL~Y~Gs~k 540 (1992)
++....++.-.||+-++|.|||-|.=-+|..... +..|.+.+.=|--+ -.-=..|+..-++..--+...+..+
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~ 135 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESK 135 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeecc
Confidence 3444456777899999999999998766655432 33333333336543 2223334333222211111111111
Q ss_pred HHHHhhhccCCCCCceEEEEeehhhhhchh-hhhccCccEEEEcCccccCChhhHHHHHHHhc--------cc-ceEEEE
Q 000160 541 ERKFKRQGWLKPNSFHVCITTYRLIIQDSK-VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF--------NS-KRRILL 610 (1992)
Q Consensus 541 eRk~kr~gw~k~~~fdVVITSYe~l~qD~~-~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L--------~a-~rRLLL 610 (1992)
....-.|-++|=.++.+... -..-..+++||+||||. .|-..-.++.+ +. -+.+++
T Consensus 136 ----------~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 136 ----------VSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHE----RSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred ----------CCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhh----hhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 11233466778788877643 22234689999999995 23333333322 21 245788
Q ss_pred ecc
Q 000160 611 TGT 613 (1992)
Q Consensus 611 TGT 613 (1992)
|+|
T Consensus 202 SAT 204 (845)
T COG1643 202 SAT 204 (845)
T ss_pred ecc
Confidence 888
No 267
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.20 E-value=8.1 Score=51.26 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
|...+..|...+..+. .-|+.-+.|.|||..+-.+...+.|..+
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~ 67 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG 67 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 3444444555554433 2478999999999999999998888544
No 268
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=79.02 E-value=7.1 Score=42.89 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=33.8
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCC-ceEEEEeccc--cccccCCcc--CCEEEEecCCC
Q 000160 1040 MRLDGSTQPEERQTLMQRFNTNPK-IFLFILSTRS--GGVGINLVG--ADTVIFYDSDW 1093 (1992)
Q Consensus 1040 ~RLDGsts~eqRq~lIerFN~D~~-ifVfLLSTrA--GG~GLNLT~--AdtVIfyD~dW 1093 (1992)
+.+.+... .+...++++|+.... .-.+|+++.. .++||||.+ +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444332 355789999986322 0134555544 699999987 67888877664
No 269
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.96 E-value=7.2 Score=50.96 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ek 501 (1992)
-||.-..|.|||..+-++...+.|..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~~~ 64 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNCEN 64 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccc
Confidence 48999999999999988888887754
No 270
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=78.26 E-value=9.6 Score=47.65 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 454 PLREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
.++|+|......|.+.+..+. .-+++-.-|+||+..+.+|..++.|..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~ 53 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQP 53 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 367888888888888887654 3368999999999999999999999643
No 271
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=77.99 E-value=13 Score=46.24 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHccCc--cE-EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeE
Q 000160 456 REYQHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKI 532 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~l--gG-ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKV 532 (1992)
.-.|...+.-|...+..+. +. +|.-+-|.|||-.+.++...+.|..+..+. |-........-.....|++.+
T Consensus 8 ~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 8 TALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred HhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEE
Confidence 3456666677777665443 34 889999999999999999999886433222 222223333323344566665
Q ss_pred EEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhh----ccCccEEEEcCccccCChhhHHHHHHHhc----cc
Q 000160 533 LTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFK----RKKWKYLILDEAHLIKNWKSQRWQTLLNF----NS 604 (1992)
Q Consensus 533 L~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~----r~~W~~LILDEAH~IKN~~Sq~~qaLl~L----~a 604 (1992)
+...|..- +.+.++.-...+. ...|+++||||||++.. ....+|+.. ..
T Consensus 83 i~~~~~~i--------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 83 VAPDGQSI--------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---SAANSLLKFLEEPSG 139 (329)
T ss_pred eccccccC--------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---HHHHHHHHHhcCCCC
Confidence 55443210 0111211111111 23689999999998843 233344443 34
Q ss_pred ceEEEEecc
Q 000160 605 KRRILLTGT 613 (1992)
Q Consensus 605 ~rRLLLTGT 613 (1992)
.-.++|+.+
T Consensus 140 ~~~~Il~t~ 148 (329)
T PRK08058 140 GTTAILLTE 148 (329)
T ss_pred CceEEEEeC
Confidence 455666555
No 272
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.48 E-value=14 Score=49.74 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHccCccE---EEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 458 YQHIGLDWLVTMYEKRLNG---ILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 458 YQ~~GL~WLvslye~~lgG---ILADEMGLGKTIQtIALLa~La~ek 501 (1992)
.|...+.+|...+..+.-+ ||.-..|.|||..+.+|...+.|..
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~ 66 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTT 66 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3566666666666554322 8899999999999999998888754
No 273
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=77.44 E-value=2.1 Score=55.62 Aligned_cols=46 Identities=26% Similarity=0.573 Sum_probs=41.6
Q ss_pred CCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1645 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1645 (1992)
.+..||.+|.-+|..-||.||-+|..|++-. | .|+..+|-.+|..|
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hV-----g------~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHV-----G------TKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhcc-----C------CCCHHHHHHHHHhc
Confidence 4789999999999999999999999999955 2 69999999999876
No 274
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=77.30 E-value=11 Score=50.11 Aligned_cols=132 Identities=20% Similarity=0.162 Sum_probs=71.0
Q ss_pred HHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH-----HHHHHHHHHHCCCCeEEEEeCchh
Q 000160 466 LVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM-----LNWETEFLKWCPAFKILTYFGSAK 540 (1992)
Q Consensus 466 Lvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL-----~NWe~EfkKw~P~lKVL~Y~Gs~k 540 (1992)
++...+++.-.|+.-|+|.|||-|.=-+|+.-. ....|.+-|.=|--+. .--..|..--. |-. +-|.
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG--~~~~g~I~~TQPRRVAavslA~RVAeE~~~~l-G~~-VGY~---- 130 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAG--FASSGKIACTQPRRVAAVSLAKRVAEEMGCQL-GEE-VGYT---- 130 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCccccHhHHHHhcc--cccCCcEEeecCchHHHHHHHHHHHHHhCCCc-Cce-eeeE----
Confidence 445556677889999999999999877765321 1222443333354332 22233332211 111 1111
Q ss_pred HHHHhhhccCCCCCceEEEEeehhhhhchhhh-hccCccEEEEcCccccCChhhHHHHHHHhc-------ccc-eEEEEe
Q 000160 541 ERKFKRQGWLKPNSFHVCITTYRLIIQDSKVF-KRKKWKYLILDEAHLIKNWKSQRWQTLLNF-------NSK-RRILLT 611 (1992)
Q Consensus 541 eRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f-~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-------~a~-rRLLLT 611 (1992)
.|-.-.....-.|...|-.++.+....= .-.++.+|||||||- .|-.+-.|+.| +.. +.+++|
T Consensus 131 ----IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~R~~LklIimS 202 (674)
T KOG0922|consen 131 ----IRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHE----RSLHTDILLGLLKKILKKRPDLKLIIMS 202 (674)
T ss_pred ----EEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhh----hhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0111111123457777888887764321 123689999999994 34444444443 333 567888
Q ss_pred cc
Q 000160 612 GT 613 (1992)
Q Consensus 612 GT 613 (1992)
||
T Consensus 203 AT 204 (674)
T KOG0922|consen 203 AT 204 (674)
T ss_pred ee
Confidence 88
No 275
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=77.30 E-value=14 Score=46.04 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 453 FPLREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
..++|+|.....-|...+..+. .-++.-..|+||+..+.+|...+.|..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 4589999999998888876544 346789999999999999999999964
No 276
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.89 E-value=18 Score=46.20 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHccC---ccEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 459 QHIGLDWLVTMYEKR---LNGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 459 Q~~GL~WLvslye~~---lgGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|...+.-|.+...++ ..-|+.-..|.|||..+.++...+.|..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~ 66 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 444444455555443 2357899999999999999999998853
No 277
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=76.58 E-value=10 Score=49.88 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHccC---ccEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 459 QHIGLDWLVTMYEKR---LNGILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 459 Q~~GL~WLvslye~~---lgGILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
|...+..|...+..+ ...||.-..|.|||-.+-++...+.|..+
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~ 72 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 72 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc
Confidence 444555555444433 35789999999999999999988888643
No 278
>PRK06526 transposase; Provisional
Probab=76.43 E-value=6.1 Score=47.50 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000160 460 HIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 525 (1992)
Q Consensus 460 ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkK 525 (1992)
..+++|+- .+.|-+|.-..|.|||..+.++...+ +..|. +++++ .+..|..++..
T Consensus 89 l~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a-~~~g~--~v~f~----t~~~l~~~l~~ 143 (254)
T PRK06526 89 LGTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRA-CQAGH--RVLFA----TAAQWVARLAA 143 (254)
T ss_pred HhcCchhh----cCceEEEEeCCCCchHHHHHHHHHHH-HHCCC--chhhh----hHHHHHHHHHH
Confidence 34446763 46788999999999999999976654 44443 33332 23456666653
No 279
>PRK08181 transposase; Validated
Probab=76.26 E-value=20 Score=43.63 Aligned_cols=47 Identities=23% Similarity=0.178 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 455 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
+-.-|...+.++-.....+.|-+|.-..|.|||..+.|+..++ +..|
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a-~~~g 134 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLAL-IENG 134 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHH-HHcC
Confidence 5567777775443233467788999999999999998876654 4443
No 280
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.13 E-value=20 Score=49.62 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=34.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHH-HHc-cCcc-EE-EEcCCCChHHHHHHHHHHHHHH
Q 000160 447 FPFLLKFPLREYQHIGLDWLVT-MYE-KRLN-GI-LADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 447 vP~lLk~~LRpYQ~~GL~WLvs-lye-~~lg-GI-LADEMGLGKTIQtIALLa~La~ 499 (1992)
+|..|.+ |+-|..-|.-.+. ... ...+ +| |.-.+|.|||.++-.++..|..
T Consensus 753 VPD~LPh--REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 753 VPKYLPC--REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CCCcCCC--hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4554444 8888888875443 333 2233 33 7999999999999999887754
No 281
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=75.87 E-value=3.6 Score=51.16 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=86.5
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH-HHHCC--CCeEEEEeCchhHH-HHhhhc
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF-LKWCP--AFKILTYFGSAKER-KFKRQG 548 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~Ef-kKw~P--~lKVL~Y~Gs~keR-k~kr~g 548 (1992)
+.+.+.--..|.|||..-...+++...-.-..--.||++|+..+.+-..+. ..|.. +.++....|....+ ...
T Consensus 63 G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~--- 139 (397)
T KOG0327|consen 63 GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQ--- 139 (397)
T ss_pred CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhh---
Confidence 367777777999999984433333211001111358999998777644433 33433 34566444433222 211
Q ss_pred cCCCCCceEEEEeehhhhh--chhhhhccCccEEEEcCcccc--CChhhHHHHHHHhccc-ceEEEEeccC
Q 000160 549 WLKPNSFHVCITTYRLIIQ--DSKVFKRKKWKYLILDEAHLI--KNWKSQRWQTLLNFNS-KRRILLTGTP 614 (1992)
Q Consensus 549 w~k~~~fdVVITSYe~l~q--D~~~f~r~~W~~LILDEAH~I--KN~~Sq~~qaLl~L~a-~rRLLLTGTP 614 (1992)
-.+....+|++.|...+.. +...|.....++.|+|||-.. +++..+.+.....++. -+.+++++|-
T Consensus 140 ~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 140 ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred hhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 1234567899998866543 233677778899999999876 4677888887777754 4778889883
No 282
>PRK14974 cell division protein FtsY; Provisional
Probab=75.64 E-value=26 Score=43.95 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=25.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC----CcHHHHHH
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT----SVMLNWET 521 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt----SLL~NWe~ 521 (1992)
.++.-..|.|||-++..+...+ ...| ..+++|... ..+.||..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l-~~~g--~~V~li~~Dt~R~~a~eqL~~ 189 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYL-KKNG--FSVVIAAGDTFRAGAIEQLEE 189 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-HHcC--CeEEEecCCcCcHHHHHHHHH
Confidence 4567799999997665555544 4333 255555433 33456644
No 283
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=75.61 E-value=1.2 Score=57.69 Aligned_cols=48 Identities=27% Similarity=0.587 Sum_probs=43.3
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1649 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1649 (1992)
.+.|+..|++.|..+|.+.|+-|..|+-.+ .|-|..|++||+.++...
T Consensus 291 ~~~wt~e~~~eL~~~~~~~~~~w~~ig~~~------------~rmp~~crd~wr~~~~~g 338 (512)
T COG5147 291 RGKWTKEEEQELAKLVVEHGGSWTEIGKLL------------GRMPNDCRDRWRDYVKCG 338 (512)
T ss_pred hccCccccccccccccccccchhhHhhhhh------------ccCcHHHHHHHhhhcccc
Confidence 789999999999999999999999999877 366779999999998765
No 284
>CHL00181 cbbX CbbX; Provisional
Probab=74.97 E-value=14 Score=45.34 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=19.5
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La 498 (1992)
.+-+|.-..|.|||..+-++...+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3458889999999999988765543
No 285
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=74.92 E-value=7.9 Score=54.23 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=75.2
Q ss_pred HHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH-----HHHHHHHHHHCCCCeEEEEeCchhHH
Q 000160 468 TMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM-----LNWETEFLKWCPAFKILTYFGSAKER 542 (1992)
Q Consensus 468 slye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL-----~NWe~EfkKw~P~lKVL~Y~Gs~keR 542 (1992)
.+|+.+.|.+++--.|.|||+.+=-.+.+ ....+...-|+|...+ .-|..-|.+- .|+.+....|...-.
T Consensus 1154 ~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~ 1228 (1674)
T KOG0951|consen 1154 SLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLD 1228 (1674)
T ss_pred eeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccc
Confidence 46677889999999999999876433332 3345677888898654 4488888776 577777777655332
Q ss_pred HHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChh
Q 000160 543 KFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWK 592 (1992)
Q Consensus 543 k~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~ 592 (1992)
.... ..-+|+|.|...+-.-. .--.-++.|+||.|.|....
T Consensus 1229 lkl~------~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1229 LKLL------QKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred hHHh------hhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccC
Confidence 2211 23469999987664332 12246889999999998654
No 286
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.55 E-value=18 Score=48.07 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHccCc--cE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 459 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--gG-ILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
|...+..|...+..+. .+ |+.-..|.|||..+-.|...+.|..+
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~ 67 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETG 67 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 4445555555544432 33 79999999999999999888888654
No 287
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.46 E-value=17 Score=49.16 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|...+..|...+..+. .-||.-..|.|||..+.+|...+.|..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~ 66 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN 66 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCC
Confidence 4455555665555543 348899999999999999999998853
No 288
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.34 E-value=19 Score=47.34 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHccC---ccEEEEcCCCChHHHHHHHHHHHHHHhcCC
Q 000160 459 QHIGLDWLVTMYEKR---LNGILADEMGLGKTIMTIAMLAHLACEKGI 503 (1992)
Q Consensus 459 Q~~GL~WLvslye~~---lgGILADEMGLGKTIQtIALLa~La~ekg~ 503 (1992)
|...+..|.+.+..+ ..-||.-..|.|||-.+..+...+.|..+.
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~ 65 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGP 65 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCC
Confidence 444445555554443 246889999999999998888888886543
No 289
>PRK08084 DNA replication initiation factor; Provisional
Probab=73.77 E-value=17 Score=43.15 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=19.0
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La 498 (1992)
.+-+|.-..|.|||..+.++..++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568899999999988776655543
No 290
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=73.56 E-value=3.7 Score=50.28 Aligned_cols=47 Identities=45% Similarity=0.561 Sum_probs=35.4
Q ss_pred CCCCCccccHHHHHHhhhcCCCchhHHHhhhcCCCCCHHHHHHhhhccc
Q 000160 297 EDKDDETTLSEEEELAKADSNNYIDEIALLQKESEIPVEELLARYRKDM 345 (1992)
Q Consensus 297 e~~DdE~Ti~EqE~~e~~~~~d~~~El~~L~~e~empleeLla~Y~~~~ 345 (1992)
.+-|++.|.+|++-.. .......||+.|.++++||+++||+.|-+..
T Consensus 31 ~dfdde~tleEeel~d--~e~~~e~ei~~l~re~dmp~~ella~yg~~a 77 (445)
T KOG4329|consen 31 NDFDDEATLEEEELAD--MEAKAEDEIETLRRESDMPIRELLALYGYTA 77 (445)
T ss_pred cchhhhccccHhhccC--ccchhhHHHHHHHHhcCCcHHHHHHHhcccc
Confidence 4557888887444333 3444667899999999999999999997753
No 291
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=73.17 E-value=32 Score=42.00 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ 499 (1992)
+.+|.-+.|.|||..+-++...+.+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5799999999999888887776644
No 292
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.07 E-value=23 Score=46.83 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHccCccE---EEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 459 QHIGLDWLVTMYEKRLNG---ILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 459 Q~~GL~WLvslye~~lgG---ILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|...+..|......+.-+ ++.-..|.|||..+.++..++.|..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 445556665555544322 8899999999999999999998854
No 293
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=72.57 E-value=11 Score=46.03 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=19.2
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La 498 (1992)
.+-+|.-+.|.|||..+.++...+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567889999999998876655543
No 294
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=72.16 E-value=14 Score=49.35 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
-|+.-+.|.|||..+.++...+.|..+
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~~~ 67 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCVNG 67 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccccC
Confidence 489999999999999999999988643
No 295
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.43 E-value=32 Score=44.51 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=37.1
Q ss_pred CccEEEEcCccccCChhhH--HHHHHHh---cccceEEEEeccCCCCChHHHHHHHHHhCC
Q 000160 576 KWKYLILDEAHLIKNWKSQ--RWQTLLN---FNSKRRILLTGTPLQNDLMELWSLMHFLMP 631 (1992)
Q Consensus 576 ~W~~LILDEAH~IKN~~Sq--~~qaLl~---L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P 631 (1992)
.+++||||-+-+....... ....++. ......++|++|+=++.+.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 5799999998765432221 1222222 123457899999988888888888887765
No 296
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.10 E-value=15 Score=49.17 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHccCc--cE-EEEcCCCChHHHHHHHHHHHHHHhcCC
Q 000160 459 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEKGI 503 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--gG-ILADEMGLGKTIQtIALLa~La~ekg~ 503 (1992)
|...+..|.+....+. .. |+.-.-|.|||..+.+|...+.|..+.
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~ 68 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGL 68 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC
Confidence 3344444444443332 33 789999999999999999999887553
No 297
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=71.09 E-value=28 Score=43.35 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 454 PLREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
.++|+|...-..|...+..+. .-++.-..|+||+..+.++...+.|...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~ 54 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNY 54 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 468888888888888776554 3477899999999999999999999753
No 298
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=71.06 E-value=45 Score=42.26 Aligned_cols=52 Identities=25% Similarity=0.242 Sum_probs=34.4
Q ss_pred CCCCCCCCChHHHHHHHHHHH-HHHc--cCccEEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 447 FPFLLKFPLREYQHIGLDWLV-TMYE--KRLNGILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 447 vP~lLk~~LRpYQ~~GL~WLv-slye--~~lgGILADEMGLGKTIQtIALLa~La~e 500 (1992)
+|..+-+ |+-|..-+.-.+ .... ...+.+|.-..|.|||..+-.++..+...
T Consensus 28 ~P~~l~~--Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 28 VPENLPH--REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred cCCCCCC--HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4444333 676666655333 3222 33567999999999999998888877553
No 299
>PF13245 AAA_19: Part of AAA domain
Probab=71.06 E-value=8.7 Score=37.72 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=33.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHh--cCCCCcEEEEecCCcHHHH
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACE--KGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~e--kg~~GP~LIVVPtSLL~NW 519 (1992)
.++---.|.|||-+.+.+++++... .+ ..++|||+|+....+.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~ 57 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADE 57 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHH
Confidence 4557789999999999999998853 33 5689999999765553
No 300
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.82 E-value=14 Score=49.63 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=28.4
Q ss_pred HHHHHHHHccC---ccEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 463 LDWLVTMYEKR---LNGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 463 L~WLvslye~~---lgGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
+..|.+.+.++ ..-||.-..|.|||..+..|...+.|..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~ 66 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCET 66 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccC
Confidence 44444444443 2446799999999999999999998854
No 301
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=70.76 E-value=5.7 Score=46.95 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWC 527 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~ 527 (1992)
+..||+-|..-+..|++- ..+.|.++---||-|||-..+=+++...... . .=+-+|||.+++.+=..-+..-+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg-~-~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADG-S-RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCC-C-cEEEEEcCHHHHHHHHHHHHHHH
Confidence 467999999999998863 4567889999999999988887766654432 2 23467899999998777766544
No 302
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=70.67 E-value=24 Score=48.43 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=70.7
Q ss_pred CCccccc--cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHH----HHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHh
Q 000160 986 PDRRLIQ--FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLD----ILEEFISLYGYTYMRLDGSTQPEERQTLMQRFN 1059 (1992)
Q Consensus 986 Pd~rLiq--~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLD----ILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN 1059 (1992)
|..++++ ..|||-.+....+......|.++||.+....... .+..++...|++...+.|+++..+|..++....
T Consensus 282 ~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~ 361 (681)
T PRK10917 282 PMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIA 361 (681)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 3345655 4689987655444444467889999998866554 555666667899999999999999999999886
Q ss_pred cCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1060 TNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1060 ~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
. +.+.|+|.+.......+++.....||+
T Consensus 362 ~-g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 362 S-GEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred C-CCCCEEEchHHHhcccchhcccceEEE
Confidence 5 456665554433444566666666555
No 303
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=70.04 E-value=20 Score=48.24 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|-..+..|.+.+..+. .-||.-.-|.|||..+..|...+.|..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 4455555555554443 458889999999999999999998864
No 304
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.93 E-value=4.6 Score=47.36 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=51.9
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCC
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPN 553 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~ 553 (1992)
.|-|++-..|.|||-.+.+|...|.... ...- ++-.. -....
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~-----------------~ke~---------vLELN------------ASdeR 90 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDS-----------------YKEA---------VLELN------------ASDER 90 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChh-----------------hhhH---------hhhcc------------Ccccc
Confidence 3679999999999987777665554210 0000 00000 11123
Q ss_pred CceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHh
Q 000160 554 SFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN 601 (1992)
Q Consensus 554 ~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~ 601 (1992)
+.|||=+..++|.|-.-.+...+.+.||||||..+- +..-|+|+.
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT---~gAQQAlRR 135 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT---AGAQQALRR 135 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh---hHHHHHHHH
Confidence 455665666666666666767788999999998663 333444443
No 305
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=69.20 E-value=21 Score=50.13 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=38.0
Q ss_pred HHHHHHHH--ccCccEEEEcCCCChHHHHHHHHHHHHHHhc---CCCCcEEE-------EecCCcHHHHHHHHHHH
Q 000160 463 LDWLVTMY--EKRLNGILADEMGLGKTIMTIAMLAHLACEK---GIWGPHLI-------VVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 463 L~WLvsly--e~~lgGILADEMGLGKTIQtIALLa~La~ek---g~~GP~LI-------VVPtSLL~NWe~EfkKw 526 (1992)
+.+|+... ....|-||.-+.|.|||..+=+|...+.... ..+++.++ +++++....|+..|+..
T Consensus 196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~i 271 (852)
T TIGR03345 196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSV 271 (852)
T ss_pred HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHH
Confidence 66666532 2345789999999999988866665543211 11234443 33455556666666654
No 306
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=68.91 E-value=29 Score=42.52 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=24.0
Q ss_pred CccEEEEcCccccCChhh--HHHHHHHhcccceEEEEeccCC
Q 000160 576 KWKYLILDEAHLIKNWKS--QRWQTLLNFNSKRRILLTGTPL 615 (1992)
Q Consensus 576 ~W~~LILDEAH~IKN~~S--q~~qaLl~L~a~rRLLLTGTPL 615 (1992)
..++|||||+|++..... .....+.......++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 357899999999833221 1222233335566788888654
No 307
>PRK08727 hypothetical protein; Validated
Probab=68.52 E-value=21 Score=42.20 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ek 501 (1992)
-+|.-..|.|||..+.|+...+ +..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~-~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAA-EQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHc
Confidence 5788899999998888776654 443
No 308
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=68.31 E-value=9.9 Score=35.55 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=35.3
Q ss_pred CCCCChhhhHHHHHHHHhcCC-Ch---hHHHHHhhccccCccccccccCchhhHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NW---SLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1645 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw---~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1645 (1992)
+-.|+++|......-|..||. || .-|++.| .. ...++.||+-.+..+
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~---~~------~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM---VV------DGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc---CC------CCCCHHHHHHHHHHH
Confidence 457999999988888999997 99 8887755 11 223788888766554
No 309
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=68.20 E-value=14 Score=49.18 Aligned_cols=109 Identities=27% Similarity=0.357 Sum_probs=80.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHH----HcCCc----EEEecCCCCHHHHHHHHHHHhcCC-CceEEEEeccccccccCCcc
Q 000160 1012 GHRALIFTQMTKMLDILEEFIS----LYGYT----YMRLDGSTQPEERQTLMQRFNTNP-KIFLFILSTRSGGVGINLVG 1082 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~----~~Gi~----y~RLDGsts~eqRq~lIerFN~D~-~ifVfLLSTrAGG~GLNLT~ 1082 (1992)
.--+|||=.-..-++.+...|. ..+-. ++-++|+.+.++.-+ -|..-+ .++=+|+||..+-..|.+.|
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEEecc
Confidence 3489999776665555555553 33322 467899999776544 465533 66667899999999999988
Q ss_pred CCEEEEecC------CCCh-----------hhHHHHHHhhcccCCcCcEEEEEEEeCCCH
Q 000160 1083 ADTVIFYDS------DWNP-----------AMDQQAQDRCHRIGQTREVHIYRLISESTI 1125 (1992)
Q Consensus 1083 AdtVIfyD~------dWNP-----------a~d~QA~gRahRIGQTRdV~VYRLIse~TI 1125 (1992)
.-.|| |+ .||| ..-+||.-|++|-|.|.+..+|||.++.-.
T Consensus 335 I~YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 335 IRYVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred eEEEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 76664 44 3555 355899999999999999999999998766
No 310
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=68.10 E-value=32 Score=36.83 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=23.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
+|.-..|.|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 45556999999999888877654 23566666543
No 311
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=67.97 E-value=33 Score=45.93 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCC
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEKGI 503 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ekg~ 503 (1992)
-|+.-.-|.|||..+-.|...+.|..+.
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~~~~ 68 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCLNPP 68 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCC
Confidence 3679999999999999998888886543
No 312
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=67.65 E-value=28 Score=48.25 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=74.0
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHCCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWCPAF 530 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N-We~EfkKw~P~l 530 (1992)
...|-+-|+.++.-++. ...-.||---.|.|||...-+++..+.. .| ..+++++|+....+ ..... +.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~-~g--~~V~~~ApTg~Aa~~L~~~~-----g~ 418 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEA-AG--YRVIGAALSGKAAEGLQAES-----GI 418 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHh-CC--CeEEEEeCcHHHHHHHHhcc-----CC
Confidence 35789999999987754 2334688888999999887776554432 33 36788889976543 32211 11
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHh--cccceEE
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN--FNSKRRI 608 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~--L~a~rRL 608 (1992)
...+.+. .. ..|. .... .-...++||||||-++.... . ..|+. .....++
T Consensus 419 ~a~Ti~~------~~-~~~~----------------~~~~--~~~~~~llIvDEasMv~~~~--~-~~Ll~~~~~~~~kl 470 (744)
T TIGR02768 419 ESRTLAS------LE-YAWA----------------NGRD--LLSDKDVLVIDEAGMVGSRQ--M-ARVLKEAEEAGAKV 470 (744)
T ss_pred ceeeHHH------HH-hhhc----------------cCcc--cCCCCcEEEEECcccCCHHH--H-HHHHHHHHhcCCEE
Confidence 1111110 00 0000 0000 11357899999999996432 2 23333 2466789
Q ss_pred EEeccCCC
Q 000160 609 LLTGTPLQ 616 (1992)
Q Consensus 609 LLTGTPLQ 616 (1992)
+|.|=|-|
T Consensus 471 iLVGD~~Q 478 (744)
T TIGR02768 471 VLVGDPEQ 478 (744)
T ss_pred EEECChHH
Confidence 99997665
No 313
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=67.55 E-value=33 Score=43.18 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHHHccCccE-EEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 455 LREYQHIGLDWLVTMYEKRLNG-ILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgG-ILADEMGLGKTIQtIALLa~La~ek 501 (1992)
++|+|...-+-|..+-.+-..+ ++.-..|.|||..+.+|...+.|..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4677777777777653222234 5788999999999999999999965
No 314
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=67.13 E-value=37 Score=43.23 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=56.3
Q ss_pred HHHHHHHHH-HccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCch
Q 000160 461 IGLDWLVTM-YEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSA 539 (1992)
Q Consensus 461 ~GL~WLvsl-ye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~ 539 (1992)
.+++.++.- +..+.-.+|.-++|.|||..++.++..++.. + +++|.|.-.--..|......++
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~-g--~~VlYvs~EEs~~qi~~Ra~rl------------- 132 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-G--GKVLYVSGEESPEQIKLRADRL------------- 132 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-C--CeEEEEECCcCHHHHHHHHHHc-------------
Confidence 455665431 1122234678899999999998888776542 2 5788876544444443333332
Q ss_pred hHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccC
Q 000160 540 KERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK 589 (1992)
Q Consensus 540 keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IK 589 (1992)
++.. . .+.+.....+..-...+...+.++||||+.|.+-
T Consensus 133 --------g~~~-~--~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 133 --------GIST-E--NLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred --------CCCc-c--cEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 1111 1 1122222222222233455678999999999874
No 315
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=67.01 E-value=19 Score=46.38 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 457 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
.-+...|.-|+...+++.|-|+--..|.|||..++++-.+.+|..|
T Consensus 193 r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 3445555556566778999999999999999999887776567655
No 316
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=66.56 E-value=21 Score=48.09 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCCChHHHHHHHHHHHHHHh-cCCCCcEEEEecC-CcHHHHHHH----HHHHCCCCeEEEEeCchhHHHHhhhccCCCCC
Q 000160 481 EMGLGKTIMTIAMLAHLACE-KGIWGPHLIVVPT-SVMLNWETE----FLKWCPAFKILTYFGSAKERKFKRQGWLKPNS 554 (1992)
Q Consensus 481 EMGLGKTIQtIALLa~La~e-kg~~GP~LIVVPt-SLL~NWe~E----fkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~ 554 (1992)
.==-|||-.+.++|+.++.. .|. .+++++|- ++...--.| +++|+|...+-...|.. .--. .+.+.
T Consensus 262 PRR~GKTwivv~iI~~ll~s~~Gi--~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I~i~-f~nG~ 333 (738)
T PHA03368 262 PRRHGKTWFLVPLIALALATFRGI--KIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----ISFS-FPDGS 333 (738)
T ss_pred cccCCchhhHHHHHHHHHHhCCCC--EEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----EEEE-ecCCC
Confidence 45679999888777766543 233 56777775 333333333 45687765443333310 0000 01111
Q ss_pred -ceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc---ccceEEEEecc
Q 000160 555 -FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF---NSKRRILLTGT 613 (1992)
Q Consensus 555 -fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L---~a~rRLLLTGT 613 (1992)
-.+... .. +.....+-..+++|||||||.|+- ..+.+++-+ .....|.+|-|
T Consensus 334 kstI~Fa---Sa-rntNsiRGqtfDLLIVDEAqFIk~---~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 334 RSTIVFA---SS-HNTNGIRGQDFNLLFVDEANFIRP---DAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred ccEEEEE---ec-cCCCCccCCcccEEEEechhhCCH---HHHHHHHHHHhccCccEEEEecC
Confidence 011111 01 222345556899999999999974 333444333 33345666644
No 317
>PRK06835 DNA replication protein DnaC; Validated
Probab=66.28 E-value=46 Score=41.68 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHH----HHccCccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 454 PLREYQHIGLDWLVT----MYEKRLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvs----lye~~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
..|.++..++.+... .-..+.|-+|.-.+|.|||..+.|+...+..
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457777676664432 2224566688889999999999887776653
No 318
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=66.22 E-value=11 Score=43.85 Aligned_cols=42 Identities=33% Similarity=0.513 Sum_probs=28.4
Q ss_pred cCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCCCh
Q 000160 575 KKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDL 619 (1992)
Q Consensus 575 ~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL 619 (1992)
...+++||||++.+-.. ....+..+.....+.|.|=|.|-..
T Consensus 61 ~~~~~liiDE~~~~~~g---~l~~l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPG---YLLLLLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred CcCCEEEEeccccCChH---HHHHHHhhccCcceEEEECchhccC
Confidence 35799999999987532 2223444444457888899999653
No 319
>PRK06921 hypothetical protein; Provisional
Probab=66.19 E-value=31 Score=41.81 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=22.2
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
+.+.+|.-..|.|||..+.|++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 456788999999999999888777654
No 320
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=65.90 E-value=22 Score=49.33 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=81.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHH----cCCcEEEecCCCCHHHHHHHHHHHhcCCCc-eEEEEeccccccccCCccCCE
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISL----YGYTYMRLDGSTQPEERQTLMQRFNTNPKI-FLFILSTRSGGVGINLVGADT 1085 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~----~Gi~y~RLDGsts~eqRq~lIerFN~D~~i-fVfLLSTrAGG~GLNLT~Adt 1085 (1992)
...-+|||-.=..-++-....|.. ..+..+-|+|..+.++.++ -|+..+.- +=+++||..+-.+|++.+.-.
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 346899998877777777777765 3477899999999887776 45553332 324899999999999998777
Q ss_pred EEEecC------CCChh-----------hHHHHHHhhcccCCcCcEEEEEEEeCCCHH
Q 000160 1086 VIFYDS------DWNPA-----------MDQQAQDRCHRIGQTREVHIYRLISESTIE 1126 (1992)
Q Consensus 1086 VIfyD~------dWNPa-----------~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1126 (1992)
|| |+ -|||. .-+.|.-|++|-|.+.+=..|||.+++..+
T Consensus 335 VI--DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VI--DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred Ee--cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 75 33 24442 335577788888888999999999986555
No 321
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=65.85 E-value=31 Score=35.39 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=47.6
Q ss_pred CCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 1011 DGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 1011 ~G~KVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
..++|+||+. +-.....+..+|+.+|+.|..+|=....+.|+.+....+...-..|||=..-.||
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG 80 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGG 80 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeC
Confidence 3579999975 4566788899999999999999877677778887777665444556654443443
No 322
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=65.23 E-value=35 Score=44.73 Aligned_cols=148 Identities=17% Similarity=0.086 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHH-----ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcE-EEEecCCc-HHHHHHHHHHHC--
Q 000160 457 EYQHIGLDWLVTMY-----EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPH-LIVVPTSV-MLNWETEFLKWC-- 527 (1992)
Q Consensus 457 pYQ~~GL~WLvsly-----e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~-LIVVPtSL-L~NWe~EfkKw~-- 527 (1992)
|+|+.-+..+.-.. ....-++|.=-=|=|||..+.++..+...-.|..|+. ++++++.- -..=-.++++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56776655544221 1111345555678999998888777666655666664 44445421 111113333333
Q ss_pred -CCCeEEEEeCchhHHHHhhhcc--CCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc--
Q 000160 528 -PAFKILTYFGSAKERKFKRQGW--LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-- 602 (1992)
Q Consensus 528 -P~lKVL~Y~Gs~keRk~kr~gw--~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-- 602 (1992)
|.+.... + .+..+..+.+. ...++ .+..+..+.....-.+..++|+||+|..++. ..+.++..-
T Consensus 81 ~~~l~~~~--~-~~~~~~~~~~i~~~~~~s------~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~~g~~ 149 (477)
T PF03354_consen 81 SPELRKRK--K-PKIIKSNKKEIEFPKTGS------FFKALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDALESGMG 149 (477)
T ss_pred Chhhccch--h-hhhhhhhceEEEEcCCCc------EEEEEecCCCCccCCCCceEEEeCCCCCCCH--HHHHHHHhhhc
Confidence 3322111 0 00000001100 00111 1222334555566677899999999999873 355555433
Q ss_pred -ccceEEEEeccCC
Q 000160 603 -NSKRRILLTGTPL 615 (1992)
Q Consensus 603 -~a~rRLLLTGTPL 615 (1992)
..+..++.+.|+-
T Consensus 150 ~r~~pl~~~ISTag 163 (477)
T PF03354_consen 150 ARPNPLIIIISTAG 163 (477)
T ss_pred cCCCceEEEEeCCC
Confidence 2344555555643
No 323
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=65.20 E-value=13 Score=35.84 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhheeeehhhhhHHHHHHHHH
Q 000160 12 LKEEEQRLRKVAVNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKAL 57 (1992)
Q Consensus 12 ~keEe~rlRriA~~iAkeV~~fw~~ieKvV~~K~Q~~leekrKKAL 57 (1992)
-+++...-+..|..||+.|..||.++++- +-|.+-+.++.|.+||
T Consensus 27 f~~e~k~k~~~a~k~a~~v~~~~~~~~~~-~~k~~er~~k~Rlr~L 71 (73)
T PF07529_consen 27 FKEERKWKRARAKKLAKAVAQYHKNREKE-EQKRIEREEKQRLRAL 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHh
Confidence 34555666888999999999999999976 4555556788888887
No 324
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=64.78 E-value=2.8 Score=58.44 Aligned_cols=141 Identities=27% Similarity=0.341 Sum_probs=124.6
Q ss_pred ccccchHHHHHHHHHHHhhCC--CeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000160 992 QFDCGKLQELAILLRKLKSDG--HRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1069 (1992)
Q Consensus 992 q~dSgKLq~L~~LL~kLks~G--~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLL 1069 (1992)
..-+.|+..+..++..++..+ .+||+||||...||+++..+..+++++.+-.| +. .-+..+..|.. |.||++
T Consensus 1199 ~dfg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t~--d~~dc~~~fk~---I~clll 1272 (1394)
T KOG0298|consen 1199 GDFGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-TE--DFDDCIICFKS---IDCLLL 1272 (1394)
T ss_pred hhhccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-Cc--chhhhhhhccc---ceEEEE
Confidence 334678998888887776554 69999999999999999999999999766555 43 56678888854 999999
Q ss_pred eccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000160 1070 STRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRA 1138 (1992)
Q Consensus 1070 STrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~ 1138 (1992)
-++.||-|+||..|-|||+.+|-.||+.++||+||+|||||+++|.|||+|..+||||+||.....|..
T Consensus 1273 ~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee 1341 (1394)
T KOG0298|consen 1273 FVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEE 1341 (1394)
T ss_pred EeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999988666653
No 325
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.71 E-value=38 Score=44.68 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHccCc--cE-EEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 459 QHIGLDWLVTMYEKRL--NG-ILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--gG-ILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|...+..|.+....+. ++ +|.-+.|.|||..+..+...+.|..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~ 66 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLN 66 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcC
Confidence 4444455555554432 33 6799999999999988888887753
No 326
>PRK05642 DNA replication initiation factor; Validated
Probab=63.70 E-value=43 Score=39.69 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=23.0
Q ss_pred ccEEEEcCccccCChhh---HHHHHHHhc-ccceEEEEecc
Q 000160 577 WKYLILDEAHLIKNWKS---QRWQTLLNF-NSKRRILLTGT 613 (1992)
Q Consensus 577 W~~LILDEAH~IKN~~S---q~~qaLl~L-~a~rRLLLTGT 613 (1992)
.++||||+.|.+.+... ..+..+-.+ ....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 47899999999865322 222222222 24567888887
No 327
>PRK08116 hypothetical protein; Validated
Probab=63.48 E-value=34 Score=41.57 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.4
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
+.|-+|.-..|.|||..+.|+..++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~ 140 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIE 140 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445788999999999999998877754
No 328
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=62.82 E-value=34 Score=46.46 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=67.3
Q ss_pred CCccccc--cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHH----HHHHHHHcCCcEEEecCCCCHHHHHHHHHHHh
Q 000160 986 PDRRLIQ--FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDI----LEEFISLYGYTYMRLDGSTQPEERQTLMQRFN 1059 (1992)
Q Consensus 986 Pd~rLiq--~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDI----Le~~L~~~Gi~y~RLDGsts~eqRq~lIerFN 1059 (1992)
|..++++ ..|||--+....+......|.+|+|-+.......- +..++...|+++..+.|+++..+|..+++...
T Consensus 256 ~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~ 335 (630)
T TIGR00643 256 PMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIA 335 (630)
T ss_pred CccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHh
Confidence 3445654 45899876544333444568899999987666554 44455556899999999999999999998886
Q ss_pred cCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1060 TNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1060 ~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
. +.+.|+|.+....-..+++.....||+
T Consensus 336 ~-g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 336 S-GQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred C-CCCCEEEecHHHHhccccccccceEEE
Confidence 4 456665544433334455555555444
No 329
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.51 E-value=9.4 Score=48.72 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHh
Q 000160 466 LVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFK 545 (1992)
Q Consensus 466 Lvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~k 545 (1992)
.+.++.++.--||.-|+|.|||.|.=-+.+....... ..|.|-----.--+.--.|-.-...|.+ |-.-.-...
T Consensus 55 F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CTQprrvaamsva~RVadEMDv~l--G~EVGysIr 128 (699)
T KOG0925|consen 55 FLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACTQPRRVAAMSVAQRVADEMDVTL--GEEVGYSIR 128 (699)
T ss_pred HHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeecCchHHHHHHHHHHHHHHhcccc--chhcccccc
Q ss_pred hhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc--------ccceEEEEeccCCCC
Q 000160 546 RQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF--------NSKRRILLTGTPLQN 617 (1992)
Q Consensus 546 r~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L--------~a~rRLLLTGTPLQN 617 (1992)
...-..++..--..|---+++.-...-.--+|..||||||| ..|..+..|+.+ .--+.+.+|+|-.-.
T Consensus 129 fEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeah----ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~ 204 (699)
T KOG0925|consen 129 FEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAH----ERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE 204 (699)
T ss_pred ccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhh----hhhHHHHHHHHHHHHHHhhCCCceEEEeecccchH
Q ss_pred ChHHHHH
Q 000160 618 DLMELWS 624 (1992)
Q Consensus 618 sL~ELwS 624 (1992)
.+..+|.
T Consensus 205 Kfq~yf~ 211 (699)
T KOG0925|consen 205 KFQRYFG 211 (699)
T ss_pred HHHHHhC
No 330
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=62.35 E-value=46 Score=45.22 Aligned_cols=83 Identities=12% Similarity=0.196 Sum_probs=55.0
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHH-cCCcEEEecCCCCHHHHHHHHHHHhcC--CCceEEEEeccccccccCC------
Q 000160 1010 SDGHRALIFTQMTKMLDILEEFISL-YGYTYMRLDGSTQPEERQTLMQRFNTN--PKIFLFILSTRSGGVGINL------ 1080 (1992)
Q Consensus 1010 s~G~KVLIFSQ~t~mLDILe~~L~~-~Gi~y~RLDGsts~eqRq~lIerFN~D--~~ifVfLLSTrAGG~GLNL------ 1080 (1992)
..|+-.+.||.+..|-. +...|.. ..+. +.+-|..+ .|..++++|..+ ....-+|+.|.+..+||++
T Consensus 469 ~~G~~lvLfTS~~~~~~-~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISA-IGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVS 544 (636)
T ss_pred cCCCEEEEechHHHHHH-HHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCC
Confidence 35666667777765554 4444533 2233 44455443 578899999874 2223457889999999999
Q ss_pred --cc--CCEEEEecCCCChh
Q 000160 1081 --VG--ADTVIFYDSDWNPA 1096 (1992)
Q Consensus 1081 --T~--AdtVIfyD~dWNPa 1096 (1992)
.| ...||+.-.|+-|.
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred CCCCCcccEEEEEeCCCCcC
Confidence 23 78899988888774
No 331
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=62.11 E-value=12 Score=36.53 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhheeeehhhhhHHHHHHHHH
Q 000160 13 KEEEQRLRKVAVNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKAL 57 (1992)
Q Consensus 13 keEe~rlRriA~~iAkeV~~fw~~ieKvV~~K~Q~~leekrKKAL 57 (1992)
+++-..-+-.|..||+.|-.||.++|+. +-|...+.++.|.++|
T Consensus 28 ~e~~k~k~~~a~kla~~v~~~h~~~e~~-e~r~~er~ek~Rl~~l 71 (73)
T smart00573 28 KEEHKWKIAAAKKMAKAVMDYHQNKEKE-EERREEKNEKRRLRKL 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 4455556778899999999999999954 4566678888888887
No 332
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=62.05 E-value=19 Score=49.54 Aligned_cols=75 Identities=24% Similarity=0.258 Sum_probs=50.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCC-----ChhhHHHHHHhhcccCC-cC
Q 000160 1039 YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDW-----NPAMDQQAQDRCHRIGQ-TR 1112 (1992)
Q Consensus 1039 y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dW-----NPa~d~QA~gRahRIGQ-TR 1112 (1992)
+...+-+.+.++|.-+=..|.. +-++|+ +.|.....|+||.+ .+||+=-|.. .-....|.+||++|.|= |.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~-g~i~vl-~aTSTlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFRE-GNIFVL-VATSTLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred ceecccccccchHHHHHHHHHh-cCeEEE-EecchhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 3444556666777766556754 777774 55666889999974 7777766543 33566899999999983 44
Q ss_pred cEEE
Q 000160 1113 EVHI 1116 (1992)
Q Consensus 1113 dV~V 1116 (1992)
.-.|
T Consensus 602 Gdsi 605 (1008)
T KOG0950|consen 602 GDSI 605 (1008)
T ss_pred cceE
Confidence 4333
No 333
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=61.71 E-value=9.2 Score=48.30 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=39.9
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1646 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1646 (1992)
...|+..|+=+|..-+|.||= ||.-|||-+ | .++...|++=|....
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hI----------G-tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHI----------G-TKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHH----------c-ccchHHHHHHHHHHH
Confidence 468999999999999999995 999999966 3 489999999887654
No 334
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=61.68 E-value=73 Score=37.24 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=19.6
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
..+-+|.-+.|.|||..+.++..++
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4456899999999998887766554
No 335
>PRK05580 primosome assembly protein PriA; Validated
Probab=61.59 E-value=48 Score=45.53 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=70.1
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH-HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000160 993 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS-LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1071 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~-~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLST 1071 (1992)
..|||......++......|.+|||.+.......-+...|. ..|.....++|+++..+|.....+... +.+.| +++|
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~I-VVgT 248 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKV-VIGA 248 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCE-EEec
Confidence 36899999888887777778999999999888777766664 458899999999999888887777654 34555 5666
Q ss_pred cccccccCCccCCEEEEec
Q 000160 1072 RSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1072 rAGG~GLNLT~AdtVIfyD 1090 (1992)
++.- =+.+..-..||+=+
T Consensus 249 rsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred cHHh-cccccCCCEEEEEC
Confidence 6542 24455556665544
No 336
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=61.52 E-value=43 Score=43.56 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 000160 476 GILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ 499 (1992)
.+|.-..|+|||..+-++..++..
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 478999999999998887776654
No 337
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=61.51 E-value=57 Score=46.20 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=34.5
Q ss_pred CceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCc
Q 000160 1063 KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1113 (1992)
Q Consensus 1063 ~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRd 1113 (1992)
+..+++++|...-+|+++- .|.+|. |+. --....|+.|||+|-|+...
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCCC
Confidence 4556789999999999985 455543 331 12356899999999998654
No 338
>PRK11054 helD DNA helicase IV; Provisional
Probab=61.40 E-value=19 Score=49.33 Aligned_cols=69 Identities=19% Similarity=0.036 Sum_probs=50.9
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcHHHHHHH-HHHHC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVMLNWETE-FLKWC 527 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~-~GP~LIVVPtSLL~NWe~E-fkKw~ 527 (1992)
.+|.+-|+.++.+ ..+...|+|- .|.|||-+.++-+++|....+. ...+|+++.+.-..++..+ +...+
T Consensus 195 ~~L~~~Q~~av~~-----~~~~~lV~ag-aGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN-----GEDSLLVLAG-AGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC-----CCCCeEEEEe-CCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4689999999953 2233445565 9999999999999998865432 3478999999888887665 55544
No 339
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=61.03 E-value=12 Score=49.51 Aligned_cols=106 Identities=20% Similarity=0.318 Sum_probs=75.5
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHh-cCCCceEEEEeccccccccCCccCCEEEEec----CCCCh-----------hhHH
Q 000160 1036 GYTYMRLDGSTQPEERQTLMQRFN-TNPKIFLFILSTRSGGVGINLVGADTVIFYD----SDWNP-----------AMDQ 1099 (1992)
Q Consensus 1036 Gi~y~RLDGsts~eqRq~lIerFN-~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD----~dWNP-----------a~d~ 1099 (1992)
++.++-|+...+.+-..++ |+ ..+.++=.|++|..+-..|.+.+.-.||=.- .-+|| ..-+
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 4556666666665544433 54 2456666789999999999998887776321 13455 3447
Q ss_pred HHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH---HHHHHHHHHHHH
Q 000160 1100 QAQDRCHRIGQTREVHIYRLISESTIEENILKK---ANQKRALDDLVI 1144 (1992)
Q Consensus 1100 QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr---a~qKr~L~~~vI 1144 (1992)
+|--|++|-|.|.|-..|||.++++...-|+.- --|...|.++|+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 788899999999999999999999988877642 235567777776
No 340
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.79 E-value=46 Score=38.60 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchh--HHHHhhhccCCCCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAK--ERKFKRQGWLKPNS 554 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~k--eRk~kr~gw~k~~~ 554 (1992)
+|.-..|.|||-++.=|.+++... . ..+.+|+-..--.-=...++.|+--+.+-.|.-... ..
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~--~-~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~------------ 69 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK--G-KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA------------ 69 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--T---EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc--c-ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH------------
Confidence 566779999998877777776554 3 355666544333333445555553334433321110 00
Q ss_pred ceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhH---HHHHHHhc-ccceEEEEeccCCCCChHHHHHHHHHhC
Q 000160 555 FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQ---RWQTLLNF-NSKRRILLTGTPLQNDLMELWSLMHFLM 630 (1992)
Q Consensus 555 fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq---~~qaLl~L-~a~rRLLLTGTPLQNsL~ELwSLL~FL~ 630 (1992)
+.+.+-...+...+.++|++|=+-+-.+.... ..+.+..+ ....-|.|++|=-+..+..+......+.
T Consensus 70 --------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~ 141 (196)
T PF00448_consen 70 --------EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG 141 (196)
T ss_dssp --------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS
T ss_pred --------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc
Confidence 11122233455567899999999776553332 22222222 3456678888877766666655555553
Q ss_pred C
Q 000160 631 P 631 (1992)
Q Consensus 631 P 631 (1992)
+
T Consensus 142 ~ 142 (196)
T PF00448_consen 142 I 142 (196)
T ss_dssp T
T ss_pred C
Confidence 3
No 341
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=60.79 E-value=58 Score=43.91 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|...+..|.+.+..+. .-|+.-..|.|||..+.++...+.|..
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4444455555554432 246899999999999999999998864
No 342
>PRK04195 replication factor C large subunit; Provisional
Probab=60.36 E-value=44 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=19.1
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
....+|.-..|.|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999999998776665443
No 343
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.33 E-value=52 Score=43.60 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=69.5
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH-HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000160 993 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS-LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1071 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~-~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLST 1071 (1992)
..|||-.....++......|.+|||.+.......-+...|. ..|.....++|.++..+|.....+-.. +...| ++.|
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~I-VVGT 83 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILV-VIGT 83 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCE-EECC
Confidence 46999999988888888889999999999887776666665 457889999999999888887776653 44555 5666
Q ss_pred cccccccCCccCCEEEEec
Q 000160 1072 RSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1072 rAGG~GLNLT~AdtVIfyD 1090 (1992)
++.- =+-+.....||+=+
T Consensus 84 rsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 84 RSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred hHHH-cCcccCCCEEEEEC
Confidence 6532 23445555555543
No 344
>PRK11823 DNA repair protein RadA; Provisional
Probab=59.82 E-value=69 Score=41.82 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=56.9
Q ss_pred HHHHHHHH-HHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCch
Q 000160 461 IGLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSA 539 (1992)
Q Consensus 461 ~GL~WLvs-lye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~ 539 (1992)
.+++.++. -+..+.-.+|.-++|.|||..++.++..++. . .+++|.|.---...++.....+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~--g~~vlYvs~Ees~~qi~~ra~rl------------- 130 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA-A--GGKVLYVSGEESASQIKLRAERL------------- 130 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh-c--CCeEEEEEccccHHHHHHHHHHc-------------
Confidence 45666653 1222223478999999999999998887663 2 24778877544444443333332
Q ss_pred hHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCC
Q 000160 540 KERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN 590 (1992)
Q Consensus 540 keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN 590 (1992)
+|... . +.+..-..+..-...+...+.++||||+.|.+..
T Consensus 131 --------g~~~~-~--l~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 131 --------GLPSD-N--LYLLAETNLEAILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred --------CCChh-c--EEEeCCCCHHHHHHHHHhhCCCEEEEechhhhcc
Confidence 11100 1 1111111122222334456789999999997743
No 345
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=59.71 E-value=40 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 000160 476 GILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La 498 (1992)
-+|.-..|+|||..+-|+..++.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~ 166 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIE 166 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHH
Confidence 46788999999988877665554
No 346
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.46 E-value=32 Score=42.89 Aligned_cols=126 Identities=23% Similarity=0.271 Sum_probs=66.4
Q ss_pred ccEE-EEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCC
Q 000160 474 LNGI-LADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKP 552 (1992)
Q Consensus 474 lgGI-LADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~ 552 (1992)
.+.| +.---|.||| +||+=|++.....|. .+||++--.--.-=...++-|.-.+.+-++.+.. | ..|
T Consensus 139 p~Vil~vGVNG~GKT-TTIaKLA~~l~~~g~--~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~--------G-~Dp 206 (340)
T COG0552 139 PFVILFVGVNGVGKT-TTIAKLAKYLKQQGK--SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKE--------G-ADP 206 (340)
T ss_pred cEEEEEEecCCCchH-hHHHHHHHHHHHCCC--eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCC--------C-CCc
Confidence 3443 3566899999 678888887776553 4555543322222344455554322222222110 0 000
Q ss_pred CCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc---------ccceEEEE--eccCCCCChHH
Q 000160 553 NSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF---------NSKRRILL--TGTPLQNDLME 621 (1992)
Q Consensus 553 ~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L---------~a~rRLLL--TGTPLQNsL~E 621 (1992)
. ..+..-.+.-+...+++||+|=|=|+-|.. .+..-|..+ .+.+..+| =||-=||.+..
T Consensus 207 A---------aVafDAi~~Akar~~DvvliDTAGRLhnk~-nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 207 A---------AVAFDAIQAAKARGIDVVLIDTAGRLHNKK-NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred H---------HHHHHHHHHHHHcCCCEEEEeCcccccCch-hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 0 011122334455789999999999998743 222222222 33454554 48888887664
No 347
>PRK06893 DNA replication initiation factor; Validated
Probab=59.16 E-value=64 Score=38.11 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=17.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHH
Q 000160 477 ILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La 498 (1992)
+|.-..|.|||..+.|+...+.
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 7889999999988877665543
No 348
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=58.93 E-value=15 Score=45.02 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHcc--CccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 457 EYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~--~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
-+|...|.-|.+-... ..+-++--..|.|||-++.+|.+.|.|
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 3677777766544333 235578889999999999999988876
No 349
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=58.86 E-value=7.7 Score=49.09 Aligned_cols=44 Identities=27% Similarity=0.538 Sum_probs=40.1
Q ss_pred CCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHH
Q 000160 1591 DVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1645 (1992)
Q Consensus 1591 ~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1645 (1992)
..||.+|-.+|..=|..||-.|.-||+-+ | .+++.||-.+|-.|
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HV----------g-tKt~EqCIl~FL~L 323 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVARHV----------G-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHh----------C-CCCHHHHHHHHHcC
Confidence 48999999999999999999999999966 2 59999999999876
No 350
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=58.34 E-value=19 Score=35.18 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=43.8
Q ss_pred CCCChhhhHHHHHHHHhc-----C------------CChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHH
Q 000160 1591 DVWLPQEDAILCAVVHEY-----G------------PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1649 (1992)
Q Consensus 1591 ~~w~~~ed~~l~~~v~~~-----g------------~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1649 (1992)
..||+.|-.+|+.+|.+| | .-|.-|+..|++... ..|++.+|+.+|..+....
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~------~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP------GKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHHH
Confidence 579999999999999998 3 139999999977433 2699999999999987653
No 351
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=58.28 E-value=45 Score=47.40 Aligned_cols=128 Identities=17% Similarity=0.160 Sum_probs=71.8
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeE
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKI 532 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKV 532 (1992)
..|-+-|+.++..+++ .+.-.+|---.|.|||.+.-+++. +....| ..+++++|+.....=..+ - -+...
T Consensus 345 ~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~-~~e~~G--~~V~~~ApTGkAA~~L~e---~-tGi~a 414 (988)
T PRK13889 345 LVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVARE-AWEAAG--YEVRGAALSGIAAENLEG---G-SGIAS 414 (988)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHH-HHHHcC--CeEEEecCcHHHHHHHhh---c-cCcch
Confidence 4689999999987764 122357777899999987544433 333333 357778898765432211 0 01110
Q ss_pred EEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHh-c-ccceEEEE
Q 000160 533 LTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-F-NSKRRILL 610 (1992)
Q Consensus 533 L~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~-L-~a~rRLLL 610 (1992)
.+++ . ...+|.. ... .-..-++||||||-++... ....|+. . ....+++|
T Consensus 415 ~TI~------s-ll~~~~~----------------~~~--~l~~~~vlIVDEASMv~~~---~m~~LL~~a~~~garvVL 466 (988)
T PRK13889 415 RTIA------S-LEHGWGQ----------------GRD--LLTSRDVLVIDEAGMVGTR---QLERVLSHAADAGAKVVL 466 (988)
T ss_pred hhHH------H-HHhhhcc----------------ccc--ccccCcEEEEECcccCCHH---HHHHHHHhhhhCCCEEEE
Confidence 0000 0 0011110 000 0124579999999998643 3333443 2 56789999
Q ss_pred eccCCCCC
Q 000160 611 TGTPLQND 618 (1992)
Q Consensus 611 TGTPLQNs 618 (1992)
.|=|-|-.
T Consensus 467 VGD~~QLp 474 (988)
T PRK13889 467 VGDPQQLQ 474 (988)
T ss_pred ECCHHHcC
Confidence 99887743
No 352
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=58.12 E-value=38 Score=44.17 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 000160 476 GILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ 499 (1992)
.+|.-..|+|||..+-|+..++.+
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~ 167 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRE 167 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 467889999999988887777654
No 353
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=57.81 E-value=35 Score=38.19 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=34.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw 526 (1992)
+++-+.|.|||+.++.++...+. .| .++++|...-...+....+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~-~g--~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLA-RG--EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH-CC--CcEEEEECCCCHHHHHHHHHHc
Confidence 67888999999999998887653 33 5788888765555555544443
No 354
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=57.81 E-value=47 Score=45.61 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ek 501 (1992)
.|+.-+.|.|||..+-+|...+.|..
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC~~ 68 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNCSH 68 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccc
Confidence 47899999999999999999988853
No 355
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=57.78 E-value=51 Score=42.22 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 000160 476 GILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ 499 (1992)
-+|.-..|+|||..+-++...+..
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~ 162 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILE 162 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 368899999999999887776654
No 356
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.75 E-value=17 Score=45.32 Aligned_cols=130 Identities=20% Similarity=0.238 Sum_probs=70.9
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhc--CCCCc-EEEEecCCcHHHHHH----HHHHHCCCCeE-EEEeCchhHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEK--GIWGP-HLIVVPTSVMLNWET----EFLKWCPAFKI-LTYFGSAKERKF 544 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ek--g~~GP-~LIVVPtSLL~NWe~----EfkKw~P~lKV-L~Y~Gs~keRk~ 544 (1992)
..|-|---.-|.|||.. |.....+.- ...-| .+-++|+.=+..-.. |+-+|+ ++++ +.+-|+...|.
T Consensus 129 p~nlIaQsqsGtGKTaa---FvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG- 203 (477)
T KOG0332|consen 129 PQNLIAQSQSGTGKTAA---FVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG- 203 (477)
T ss_pred chhhhhhhcCCCchhHH---HHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC-
Confidence 34445556789999953 333222321 11112 345588854333333 334555 3332 22333321111
Q ss_pred hhhccCCCCCceEEEEeehhhhhchhhhhcc---CccEEEEcCccccCChh---hHHHHHHHhcc-cceEEEEecc
Q 000160 545 KRQGWLKPNSFHVCITTYRLIIQDSKVFKRK---KWKYLILDEAHLIKNWK---SQRWQTLLNFN-SKRRILLTGT 613 (1992)
Q Consensus 545 kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~---~W~~LILDEAH~IKN~~---Sq~~qaLl~L~-a~rRLLLTGT 613 (1992)
..-.-+|+|-|..++..-...++.+ ..+.+|+|||.++-+.. -+..+....+. ....+|.|+|
T Consensus 204 ------~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSAT 273 (477)
T KOG0332|consen 204 ------NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSAT 273 (477)
T ss_pred ------CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeech
Confidence 1124579999999988766555544 57899999999886643 22233333443 5677888887
No 357
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=57.74 E-value=4.8 Score=53.23 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc---hhhhhccCccEEEEcCccccCChhhHHH
Q 000160 520 ETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD---SKVFKRKKWKYLILDEAHLIKNWKSQRW 596 (1992)
Q Consensus 520 e~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD---~~~f~r~~W~~LILDEAH~IKN~~Sq~~ 596 (1992)
..++-.-...+++..|||+.+.- ...++|+-.|+++.++ ...=-..+=..||||||||+-+.-...+
T Consensus 299 iEdLv~lGk~~~~CPYY~SR~av----------p~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlidti~smh 368 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYASRRAV----------PQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLIDTICSMH 368 (821)
T ss_pred HHHHHHhhhhcCCCCchhhhhcc----------ccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHHHHHHhh
Q ss_pred HHHHhc
Q 000160 597 QTLLNF 602 (1992)
Q Consensus 597 qaLl~L 602 (1992)
-+-..+
T Consensus 369 sa~Is~ 374 (821)
T KOG1133|consen 369 SAEISF 374 (821)
T ss_pred hhheeH
No 358
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.12 E-value=48 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.5
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLA 495 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa 495 (1992)
+.||.-..|.|||..+-++..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568899999999977665533
No 359
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=56.80 E-value=45 Score=40.69 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCC
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEKGI 503 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ekg~ 503 (1992)
-+|+-..|.|||..+.++...+.|....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~ 54 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPT 54 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 5788889999999999999999886543
No 360
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.60 E-value=66 Score=43.70 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 458 YQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 458 YQ~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
.|...+..|.+.+..+. .-|+.-.-|.|||..+..|...+.|..
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~ 66 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 35666666666665532 347899999999999999999998864
No 361
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=55.57 E-value=44 Score=43.98 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHHHc--------cCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000160 455 LREYQHIGLDWLVTMYE--------KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye--------~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw 526 (1992)
...+.+..+.|.+...+ ...|.+|+--.|.|||+.+-++...+ ..+++.|-..+++..|.-|..+-
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHHH
Confidence 46677777777764433 23467899999999998887665422 13666666558888898887663
No 362
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=55.54 E-value=55 Score=40.73 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ek 501 (1992)
-||.-+.|.|||-.+-++...+.|..
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l~~~~ 64 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNCQN 64 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 37899999999999999998888763
No 363
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=55.32 E-value=83 Score=35.03 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=35.9
Q ss_pred cCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhC
Q 000160 575 KKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLM 630 (1992)
Q Consensus 575 ~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~ 630 (1992)
..+++||+|=...+.+ ....+..+..-..+++..+|-..++.++..+++++.
T Consensus 66 ~~yD~VIiD~pp~~~~----~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 66 GELDYLVIDMPPGTGD----EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCCEEEEeCCCCCcH----HHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 5799999998886532 111222223445666777999999999999888884
No 364
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=55.21 E-value=22 Score=46.92 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEE
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTY 535 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y 535 (1992)
|...+..|......+. +-++.-.=|.|||-.+=-+...|-|..+..+-....|..+ .+|..- ....|+-+
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C------k~I~~g-~~~DviEi 93 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC------KEINEG-SLIDVIEI 93 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh------HhhhcC-Ccccchhh
Confidence 3344444444443332 4478889999999988778888888765444434444433 222221 01222222
Q ss_pred eCc-----hhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc---ccceE
Q 000160 536 FGS-----AKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF---NSKRR 607 (1992)
Q Consensus 536 ~Gs-----~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L---~a~rR 607 (1992)
.+. ..-|.....-.+ .-...+++..||||+|++. ++.+.+|+.. ...+.
T Consensus 94 DaASn~gVddiR~i~e~v~y--------------------~P~~~ryKVyiIDEvHMLS---~~afNALLKTLEEPP~hV 150 (515)
T COG2812 94 DAASNTGVDDIREIIEKVNY--------------------APSEGRYKVYIIDEVHMLS---KQAFNALLKTLEEPPSHV 150 (515)
T ss_pred hhhhccChHHHHHHHHHhcc--------------------CCccccceEEEEecHHhhh---HHHHHHHhcccccCccCe
Confidence 111 111111111000 0113578999999999984 6677777665 45555
Q ss_pred EEEecc
Q 000160 608 ILLTGT 613 (1992)
Q Consensus 608 LLLTGT 613 (1992)
..+=+|
T Consensus 151 ~FIlAT 156 (515)
T COG2812 151 KFILAT 156 (515)
T ss_pred EEEEec
Confidence 544444
No 365
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.20 E-value=1.2e+02 Score=39.08 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=62.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC----CcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT----SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKP 552 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt----SLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~ 552 (1992)
.|.-..|.|||..+..|...+. ..| ..+++|.-. ..+.||. .|+....
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~-~~G--kkVglI~aDt~RiaAvEQLk----~yae~lg--------------------- 296 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFH-GKK--KTVGFITTDHSRIGTVQQLQ----DYVKTIG--------------------- 296 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHH-HcC--CcEEEEecCCcchHHHHHHH----HHhhhcC---------------------
Confidence 4566699999987776666554 332 255655542 2344554 3432111
Q ss_pred CCceEE-EEeehhhhhchhhhhc-cCccEEEEcCccccCChhhH---HHHHHHhcccce-EEEEeccCCCCChHHHHHHH
Q 000160 553 NSFHVC-ITTYRLIIQDSKVFKR-KKWKYLILDEAHLIKNWKSQ---RWQTLLNFNSKR-RILLTGTPLQNDLMELWSLM 626 (1992)
Q Consensus 553 ~~fdVV-ITSYe~l~qD~~~f~r-~~W~~LILDEAH~IKN~~Sq---~~qaLl~L~a~r-RLLLTGTPLQNsL~ELwSLL 626 (1992)
+.++ +.+...+......+.. .+.++||+|-+=+..+.... ..+.+....... -|.|++|--++.+.++...+
T Consensus 297 --ipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 297 --FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred --CcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 1111 1122233333333432 35899999988654332221 222222222222 34566776666666666665
Q ss_pred HHhCC
Q 000160 627 HFLMP 631 (1992)
Q Consensus 627 ~FL~P 631 (1992)
+.+.+
T Consensus 375 ~~~~i 379 (436)
T PRK11889 375 KDIHI 379 (436)
T ss_pred cCCCC
Confidence 55433
No 366
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=55.08 E-value=55 Score=45.37 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=21.2
Q ss_pred cCccEEEEcCCCChHHHHHHHHHHHHH
Q 000160 472 KRLNGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 472 ~~lgGILADEMGLGKTIQtIALLa~La 498 (1992)
...|-||.-+.|.|||..+-++...+.
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999998877665553
No 367
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=54.27 E-value=36 Score=45.42 Aligned_cols=128 Identities=21% Similarity=0.296 Sum_probs=68.4
Q ss_pred HHHccCccEEEEcCCCChHHHHHHHHHHHHHH-hcCCCCcEEEEecC-----CcHHHHHHHHHHHCCCCeEEEEeCchhH
Q 000160 468 TMYEKRLNGILADEMGLGKTIMTIAMLAHLAC-EKGIWGPHLIVVPT-----SVMLNWETEFLKWCPAFKILTYFGSAKE 541 (1992)
Q Consensus 468 slye~~lgGILADEMGLGKTIQtIALLa~La~-ekg~~GP~LIVVPt-----SLL~NWe~EfkKw~P~lKVL~Y~Gs~ke 541 (1992)
..|+++-.+.|.- =-=|||-..+++|+.+.. -.|+ .+..|+-- .|+..-+.-+.+|+|.-.+..--|..-
T Consensus 198 ~~FKQkaTVFLVP-RRHGKTWf~VpiIsllL~s~~gI--~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI- 273 (668)
T PHA03372 198 NIFKQKATVFLVP-RRHGKTWFIIPIISFLLKNIIGI--SIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVI- 273 (668)
T ss_pred HHhhccceEEEec-ccCCceehHHHHHHHHHHhhcCc--eEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEE-
Confidence 3444555566653 567999999998887765 2343 45566542 234445566789998754422111000
Q ss_pred HHHhhhccCCCC--CceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc---ccceEEEEecc
Q 000160 542 RKFKRQGWLKPN--SFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF---NSKRRILLTGT 613 (1992)
Q Consensus 542 Rk~kr~gw~k~~--~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L---~a~rRLLLTGT 613 (1992)
.+..++ .-.+..++|+. ...+.-.|++|++||||.||-.. ..+++.| +....+.+|-|
T Consensus 274 ------~~s~pg~Kst~~fasc~n~-----NsiRGQ~fnll~VDEA~FI~~~a---~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 274 ------SIDHRGAKSTALFASCYNT-----NSIRGQNFHLLLVDEAHFIKKDA---FNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ------EEecCCCcceeeehhhccC-----ccccCCCCCEEEEehhhccCHHH---HHHhhhhhcccCceEEEEeCC
Confidence 000000 01122222322 34566789999999999997532 3333333 44455666544
No 368
>PRK09183 transposase/IS protein; Provisional
Probab=53.75 E-value=48 Score=40.02 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=23.1
Q ss_pred cCccEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 472 KRLNGILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 472 ~~lgGILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
.+.|.+|.-..|.|||..+.++ ++.++..|
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al-~~~a~~~G 130 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIAL-GYEAVRAG 130 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHH-HHHHHHcC
Confidence 4677888889999999999887 44455544
No 369
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=53.58 E-value=48 Score=33.40 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=41.5
Q ss_pred CCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000160 1011 DGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1069 (1992)
Q Consensus 1011 ~G~KVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLL 1069 (1992)
.+++|+||+. +-.....+..+|+.+|+.|..++=....+-|+.+.+.-....-..|||=
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 3579999987 5567888999999999999999866665556655554333333445543
No 370
>PTZ00293 thymidine kinase; Provisional
Probab=53.57 E-value=30 Score=40.71 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=23.5
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 514 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS 514 (1992)
++.--||.|||..-|-.+..... . ..++++|-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~-a--g~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTY-S--EKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHH-c--CCceEEEEecc
Confidence 44667999999777665544322 2 24788888864
No 371
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=53.33 E-value=18 Score=41.23 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=33.5
Q ss_pred hhhhccCccEEEEcCccccCChh----hHHHHHHHhcccceEEEEeccCCCCChHHHH
Q 000160 570 KVFKRKKWKYLILDEAHLIKNWK----SQRWQTLLNFNSKRRILLTGTPLQNDLMELW 623 (1992)
Q Consensus 570 ~~f~r~~W~~LILDEAH~IKN~~----Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELw 623 (1992)
..+....|++|||||.-..-++. ......|.+-...--+.|||.=....+.|+-
T Consensus 91 ~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 91 EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 33555689999999997655443 2334444443445589999985544444433
No 372
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=52.28 E-value=39 Score=40.47 Aligned_cols=41 Identities=22% Similarity=0.125 Sum_probs=29.9
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
..+.-.+|+-..|.|||..++.++.+++...| .++|++.--
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g--~~vl~iS~E 68 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHG--VRVGTISLE 68 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC--ceEEEEEcc
Confidence 33445688999999999999999888765433 367777643
No 373
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=52.10 E-value=26 Score=42.27 Aligned_cols=56 Identities=23% Similarity=0.109 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcH
Q 000160 455 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVM 516 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg-~~GP~LIVVPtSLL 516 (1992)
|-+=|...+.| . .+.--|.|- .|.|||.+.+..++++....+ ....+|+|+++...
T Consensus 1 l~~eQ~~~i~~-~----~~~~lV~a~-AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS-T----EGPLLVNAG-AGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS------SSEEEEEE--TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC-C----CCCEEEEeC-CCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 34567777766 1 122234454 999999999999999888763 44678999998653
No 374
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=51.97 E-value=64 Score=38.97 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=60.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH------HHHHHHHHHHCCCCeEEEEeCchhHHHHhhhc
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM------LNWETEFLKWCPAFKILTYFGSAKERKFKRQG 548 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL------~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~g 548 (1992)
-+.+.-++|.|||+..=++++.+... .-..||.|...+ .-|..++.- -|...+ .+..
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~-~p~~~~---------~~~~--- 115 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLES-QPKVNV---------NAVL--- 115 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhcc-Cccchh---------HHHH---
Confidence 34567899999999988666655421 123456666433 236665533 110000 0000
Q ss_pred cCCCCCceEEEEeehhhhhchhhhhcc-CccEEEEcCccccCChhhHHHHHHHhc----ccceEEEEeccCCCCC
Q 000160 549 WLKPNSFHVCITTYRLIIQDSKVFKRK-KWKYLILDEAHLIKNWKSQRWQTLLNF----NSKRRILLTGTPLQND 618 (1992)
Q Consensus 549 w~k~~~fdVVITSYe~l~qD~~~f~r~-~W~~LILDEAH~IKN~~Sq~~qaLl~L----~a~rRLLLTGTPLQNs 618 (1992)
...-..-...+.+. +..++++||||.+.-..=..-+.+.++ ...-+++|-|-|--+.
T Consensus 116 -------------e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~ 177 (269)
T COG3267 116 -------------EQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRP 177 (269)
T ss_pred -------------HHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccch
Confidence 00000011223333 448999999999865444444444444 2335688999885433
No 375
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=51.96 E-value=34 Score=38.82 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=22.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~e 500 (1992)
-+|.-+.|.|||-.+..+...+.|.
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4789999999999999999998875
No 376
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=51.13 E-value=53 Score=46.00 Aligned_cols=87 Identities=17% Similarity=0.314 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCc---hHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc-
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQM---TKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR- 1072 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~---t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTr- 1072 (1992)
-+..+..+++++- .=.|||.+- ....+-|..+|..+|++...+... ....++.|.. +.+.|++-...
T Consensus 323 ~~e~~~elvk~lG---~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~-GeidvLVGvAsy 393 (1187)
T COG1110 323 SLEKVVELVKKLG---DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE-GEVDVLVGVASY 393 (1187)
T ss_pred cHHHHHHHHHHhC---CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc-CceeEEEEeccc
Confidence 4556677777774 456999998 888999999999999998777552 3678999975 78888776543
Q ss_pred --ccccccCCcc-CCEEEEecCC
Q 000160 1073 --SGGVGINLVG-ADTVIFYDSD 1092 (1992)
Q Consensus 1073 --AGG~GLNLT~-AdtVIfyD~d 1092 (1992)
..-.||+|.. .-.+|||..|
T Consensus 394 YG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 394 YGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccceeecCCchhheeEEEEecCC
Confidence 3446999965 8899999986
No 377
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=50.62 E-value=11 Score=39.20 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM 516 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL 516 (1992)
+|--..|.|||..+-++..++ + -+++.|....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l----~--~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL----G--FPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT----T--SEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc----c--cccccccccccc
Confidence 456679999998776666554 1 244555554444
No 378
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=50.08 E-value=1.4e+02 Score=37.35 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|......|.+....+. .-++.-..|.||+..+.++...+.|..
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5555666666665543 558899999999999999999999864
No 379
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=49.83 E-value=82 Score=41.20 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHccCc--c-EEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 459 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--g-GILADEMGLGKTIQtIALLa~La~e 500 (1992)
|...+.+|.+.+..+. + -|+.-+.|.|||..+.++...+.|.
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5566677777665542 3 4789999999999999999998885
No 380
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=49.81 E-value=11 Score=50.56 Aligned_cols=66 Identities=32% Similarity=0.532 Sum_probs=48.4
Q ss_pred HHHHhc-CCCceEEEEeccccccccCCccCCEEE--------EecC---------CC-ChhhHHHHHHhhcccCCcCcEE
Q 000160 1055 MQRFNT-NPKIFLFILSTRSGGVGINLVGADTVI--------FYDS---------DW-NPAMDQQAQDRCHRIGQTREVH 1115 (1992)
Q Consensus 1055 IerFN~-D~~ifVfLLSTrAGG~GLNLT~AdtVI--------fyD~---------dW-NPa~d~QA~gRahRIGQTRdV~ 1115 (1992)
+.-|.. ....+..+++|.++-..|++.+.-+|| .||. +| .-+.-.||-||++|+| +-|
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCc
Confidence 444654 345677799999999999999988887 4554 33 4455568777777776 789
Q ss_pred EEEEEeCC
Q 000160 1116 IYRLISES 1123 (1992)
Q Consensus 1116 VYRLIse~ 1123 (1992)
.|||.+.-
T Consensus 697 cYRLYSSA 704 (1172)
T KOG0926|consen 697 CYRLYSSA 704 (1172)
T ss_pred eeehhhhH
Confidence 99998753
No 381
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=49.64 E-value=76 Score=41.35 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=19.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ 499 (1992)
..+++-..|.|||.++..|..++..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4577889999999988877776653
No 382
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=48.65 E-value=25 Score=41.94 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=43.6
Q ss_pred CCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCC
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVP 1654 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~ 1654 (1992)
.++.||++||.+|+.+--.||.-|..||-.| ++ |+-..=+--|...++|-...-.
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GNrWs~IA~~L---PG--------RTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGNRWSLIAGRL---PG--------RTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCcHHHHHHhhC---CC--------cCHHHHHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999999999988 33 6655556667777766655544
No 383
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=48.19 E-value=51 Score=38.24 Aligned_cols=141 Identities=14% Similarity=0.147 Sum_probs=70.5
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe-cCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCC
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV-PTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLK 551 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV-PtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k 551 (1992)
..+-++.--.|-|||-.++++....+. .| .+++||= =..-...=+..+-+-+|++.+..+...- .|..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g-~G--~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~--------~~~~ 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG-HG--KKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGF--------TWET 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH-CC--CeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCC--------cccC
Confidence 445678888999999999988776544 33 3666652 1111111133333445555544432110 0110
Q ss_pred CCCceEEEEee-hhhhhchhhhhccCccEEEEcCccccCChh----hHHHHHHHhcccceEEEEeccCCCCChHHHHHH
Q 000160 552 PNSFHVCITTY-RLIIQDSKVFKRKKWKYLILDEAHLIKNWK----SQRWQTLLNFNSKRRILLTGTPLQNDLMELWSL 625 (1992)
Q Consensus 552 ~~~fdVVITSY-e~l~qD~~~f~r~~W~~LILDEAH~IKN~~----Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSL 625 (1992)
.+.- .-+-.+ ..+..-...+....|++|||||.=..-++. ......|.+-...--+.|||-=....|.|+-.+
T Consensus 91 ~~~~-e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 91 QDRE-RDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCcH-HHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCch
Confidence 0000 000000 011111334556789999999987665543 333344433344458999998544444444333
No 384
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=47.62 E-value=57 Score=36.57 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=56.4
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHH-c---CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL-Y---GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1069 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~-~---Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLL 1069 (1992)
..+++..+.+|+.+....|+||+|++.-..++..|-..|=. . -+.+.+..+.- ....-|+ |
T Consensus 11 ~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~--------------~a~~PV~-L 75 (154)
T PRK06646 11 DELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ--------------PEKQPIY-I 75 (154)
T ss_pred CChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC--------------CCCCCEE-E
Confidence 47899999999999999999999999999999999999932 1 22333322221 1123343 4
Q ss_pred eccccccccCCccCCEEEEecCCC
Q 000160 1070 STRSGGVGINLVGADTVIFYDSDW 1093 (1992)
Q Consensus 1070 STrAGG~GLNLT~AdtVIfyD~dW 1093 (1992)
+ .++.+.| .++.+|++++-+
T Consensus 76 ~--~~~~~p~--~~~vLiNL~~~~ 95 (154)
T PRK06646 76 T--DELQNPN--NASVLVIISPTD 95 (154)
T ss_pred e--cCCCCCC--CCCEEEECCCcc
Confidence 4 2334555 888999999854
No 385
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=47.55 E-value=57 Score=41.57 Aligned_cols=131 Identities=11% Similarity=0.019 Sum_probs=62.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC--CcHHHHHHHHHHHCCCCeEE-EEeCchhHHHHhhhccCCCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT--SVMLNWETEFLKWCPAFKIL-TYFGSAKERKFKRQGWLKPN 553 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt--SLL~NWe~EfkKw~P~lKVL-~Y~Gs~keRk~kr~gw~k~~ 553 (1992)
|+.---|.|||..++..+...+........+|||-|+ ++-.+=-.+|+..++.+.+. .|..+...-. . ..+..
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~-i---~~~~~ 80 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME-I---KILNT 80 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE-E---EecCC
Confidence 4455689999998887766655543122456667676 23333334444333322211 1100000000 0 00000
Q ss_pred CceEEEEeehhhhhchhhhhcc-CccEEEEcCccccCChhhHHHHHHHhcc---cceEEEEeccCCC
Q 000160 554 SFHVCITTYRLIIQDSKVFKRK-KWKYLILDEAHLIKNWKSQRWQTLLNFN---SKRRILLTGTPLQ 616 (1992)
Q Consensus 554 ~fdVVITSYe~l~qD~~~f~r~-~W~~LILDEAH~IKN~~Sq~~qaLl~L~---a~rRLLLTGTPLQ 616 (1992)
.-.|+. ..+..+...++.. ...++++|||..+.. ...-+++-.++ +..++++|.||-.
T Consensus 81 g~~i~f---~g~~d~~~~ik~~~~~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIF---KGLNDKPNKLKSGAGIAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEe---ecccCChhHhhCcceeeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 111211 1111223344443 358999999999842 22222222332 2346999999964
No 386
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=47.39 E-value=27 Score=43.87 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=47.1
Q ss_pred CCCChhhhHHHHHHHHhc----------CCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCcc
Q 000160 1591 DVWLPQEDAILCAVVHEY----------GPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSIN 1659 (1992)
Q Consensus 1591 ~~w~~~ed~~l~~~v~~~----------g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~ 1659 (1992)
..|+.+|=.+|..+-++. |+.|.-||..+ ...|..|+|.+|+.||.+|.++|-.+......+
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~-------~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~ 126 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKM-------AELGYPRSPKQCKAKIENLKKKYKKEKAKKEGS 126 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHH-------HHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 578887766665554433 34599999955 267788999999999999999999887665544
No 387
>PF13173 AAA_14: AAA domain
Probab=46.94 E-value=19 Score=38.33 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=0.0
Q ss_pred EEEEcCccccCChhhHHHHHHHhcccceEEEEecc
Q 000160 579 YLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGT 613 (1992)
Q Consensus 579 ~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGT 613 (1992)
+|||||+|++.++....-..+-.. ...++++||.
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhc-cCceEEEEcc
No 388
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=46.73 E-value=58 Score=41.90 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=31.0
Q ss_pred CccEEEEcCccccCChhhH---HHHHHHhc-ccceEEEEec--cCCCCC--hHHHHHHHH
Q 000160 576 KWKYLILDEAHLIKNWKSQ---RWQTLLNF-NSKRRILLTG--TPLQND--LMELWSLMH 627 (1992)
Q Consensus 576 ~W~~LILDEAH~IKN~~Sq---~~qaLl~L-~a~rRLLLTG--TPLQNs--L~ELwSLL~ 627 (1992)
.-++|++|-.|.+.+...- ....+..+ .....++||+ +|-+-+ ...|.|-+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~ 234 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLE 234 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHh
Confidence 4688999999999875322 22222233 2334899999 775433 234555443
No 389
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=46.58 E-value=1.5e+02 Score=43.93 Aligned_cols=343 Identities=18% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHH-HhhccCCCCCCCCCCCCCCCccccccccCCCCCCCCCCcccccchhhccCCCCCCCCccCCCcccCCCCCCCCccc
Q 000160 74 MLA-ENLVDSHKPVQQSPMREQPGIQYKEADENGAEEPGVQSKEADEDDAEQHSGFEPQLDAADIDEEYDVHSEDESEDD 152 (1992)
Q Consensus 74 ~La-e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ef~~~~~ee~eDD 152 (1992)
|+| -|+-.|..|.+++..+.+. ...+.++...+++..+ +-++|+|-+-...|++.+.
T Consensus 3791 ~va~ngfcsp~~p~e~~n~~~le------------~gtglg~g~gaed~~~----------~l~edddl~e~aneed~~~ 3848 (4600)
T COG5271 3791 MVANNGFCSPDLPQEKSNSGELE------------SGTGLGSGVGAEDITN----------TLNEDDDLEELANEEDTAN 3848 (4600)
T ss_pred HHHhCCCCCCCCcccccCccccc------------cCCCCCCCcccccccc----------ccccccchhhhcccccccc
Q ss_pred hhhhHHHHhhc------------------------chHHHHHHHHHhhcCCCCChHHHHhhhcc------------cccC
Q 000160 153 EHTIEEDEALI------------------------TEEERKEELEALHNETDIPLQELLKRYAV------------DKVG 196 (1992)
Q Consensus 153 E~TIeeeE~~~------------------------~~~~~~~El~~L~~E~elpleeLl~~y~~------------~~~~ 196 (1992)
-....+.|+.+ .+.+-.+|+.++..+-.=+|.|=|-.-+. ....
T Consensus 3849 ~~d~de~ea~ele~dm~g~~~ds~~~enen~dse~e~qdldeevndi~ed~~nslneklwde~~~ed~~eteqk~~eqsa 3928 (4600)
T COG5271 3849 QSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSA 3928 (4600)
T ss_pred ccccchHHHHHhhhccccccccccccccCCCcchhhhhhhhhhhhcCCcccchhhhHhhcCCcchhhhhhhhhhhhhhhh
Q ss_pred cCCcccCCCCCCCCcccccccccCCCCccccCCccCCCCcccccccccCCCCcccccccccccccccccccccCCCcccc
Q 000160 197 RESSAEMGEDEAEPTVVEEGHVQGNGNDLLAGSKLDTSGSLVRRCDEINGGLSISENHLLDIETSQVRDTSKKSGASTQK 276 (1992)
Q Consensus 197 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 276 (1992)
..+..+..+.+....-.|+.+.+..+.+ ++.+++=+-+........++..+...|+...+.-+.... -...+++...
T Consensus 3929 ~nne~~~~~kedd~~a~ed~d~q~~~de-~e~~ddvg~ddeiq~d~~en~~~~~pe~e~ldlpedl~l--d~~~~d~~~d 4005 (4600)
T COG5271 3929 ANNESDLVSKEDDNKALEDKDRQEKEDE-EEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKL--DEKEGDVSKD 4005 (4600)
T ss_pred hcchhhccccccCCCCccccchhhhcch-hhhccccCcccccCcchhcccCCCCCccccCCCchhcCC--cccccccccc
Q ss_pred ccccCCCCCccCCcccccC---CCCCCCccccHHHHHHhhhcCCCchhHHHh-hhcCCCCCHHHHHHhhhcccccccCCc
Q 000160 277 QALYDFSDEQEDGDFVVAT---GEDKDDETTLSEEEELAKADSNNYIDEIAL-LQKESEIPVEELLARYRKDMKINKISE 352 (1992)
Q Consensus 277 ~~~~~~~~e~eD~df~~~~---~e~~DdE~Ti~EqE~~e~~~~~d~~~El~~-L~~e~empleeLla~Y~~~~~~~~~~~ 352 (1992)
..-.+++-|-.|++-.+.+ +|..-||+-.+++-.+......|.-..+++ -+|++|=..|+=....+..-...-.++
T Consensus 4006 ~dl~dmdme~~den~eead~e~dep~~ded~~e~~~tlded~~~dd~~dla~dd~k~nedg~ee~~~~nee~~~~~~~~d 4085 (4600)
T COG5271 4006 SDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSD 4085 (4600)
T ss_pred CChhhccchhcccchhhcccccCCCCCCCCccccccccchhhccchhhhhhcccccccccchhhhhhcchhhhhccccch
Q ss_pred ccccccccCCCCCCCCCCCCcccccc-ccccCCCCCCCCCcccccCcccccccCCCcccc-------ccchhhhhhHHHH
Q 000160 353 DESDYASALSDDLSDSPAHEDGELKL-ENDFMDGNVDPGASQLVMLPLTEKQEGGSEKKS-------EEGRESENRIADA 424 (1992)
Q Consensus 353 ~e~~~~~~~se~~~~~~~~ede~~~~-d~D~~dEe~ds~e~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~ 424 (1992)
.+-++..+..+..=|-....|..... .+.-++++.+-|...-.-.--++...++....+ +..........++
T Consensus 4086 e~~eqg~~~~~q~id~~~k~da~~~~~~a~~~ee~~~kg~~~e~~e~~eed~v~g~gta~~~~eq~qed~s~~~ea~~ea 4165 (4600)
T COG5271 4086 EELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEEDGVRGNGTADGEFEQVQEDTSTPKEAMSEA 4165 (4600)
T ss_pred hhHhccCCCcccccCCCcccchhhhhhhhhhhhhccCccccccchhhcccccCCCCCcCCcchhhhhcccCCcHHHHHHH
Q ss_pred HHHhhcCCCCCCccccccccccCCCCCCCCChHHHHH
Q 000160 425 AAAARSAQPTGITFSTTQVRTKFPFLLKFPLREYQHI 461 (1992)
Q Consensus 425 aa~a~s~qP~G~t~~tt~vkt~vP~lLk~~LRpYQ~~ 461 (1992)
.++-.++-.- ||+||+.
T Consensus 4166 ~~~~q~lgd~--------------------lre~~~~ 4182 (4600)
T COG5271 4166 DRQYQSLGDH--------------------LREWQQA 4182 (4600)
T ss_pred HHHHHHHHHH--------------------HHHHHHH
No 390
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=45.82 E-value=1.2e+02 Score=34.24 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=65.8
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEE--ecCCcHHHHHHHHHHHCCCCeEEEEeCch--------hHHHHhhh
Q 000160 478 LADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV--VPTSVMLNWETEFLKWCPAFKILTYFGSA--------KERKFKRQ 547 (1992)
Q Consensus 478 LADEMGLGKTIQtIALLa~La~ekg~~GP~LIV--VPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~--------keRk~kr~ 547 (1992)
+---.|-|||-.++++....+. .|. +++|| .-.. ...=+..+-+-+|++.+..+.... ..+...+.
T Consensus 7 vy~g~G~Gkt~~a~g~~~ra~~-~g~--~v~~vQFlKg~-~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 7 VYTGNGKGKTTAALGLALRALG-HGY--RVGVVQFLKGG-WKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred EECCCCCCHHHHHHHHHHHHHH-CCC--eEEEEEEeCCC-CccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 3345699999999987765543 333 55653 1111 001133444555766665532210 00111111
Q ss_pred ccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChh----hHHHHHHHhcccceEEEEeccCCCCChHHHH
Q 000160 548 GWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWK----SQRWQTLLNFNSKRRILLTGTPLQNDLMELW 623 (1992)
Q Consensus 548 gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~----Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELw 623 (1992)
+ +..-...+....+++|||||.=..-+.. ......+.+-....-+.|||-=.+..+.|+-
T Consensus 83 ~----------------~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 83 G----------------WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred H----------------HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 1 1111233455689999999987664433 2334444443445579999986554444443
No 391
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=45.54 E-value=1.3e+02 Score=37.21 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHHHHccCc--cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 454 PLREYQHIGLDWLVTMYEKRL--NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~l--gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
.|...|...+..|.+.+.++. .++|--- |.||+..+..|...+.|..
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 467788888888888876654 3444433 6899999999999999965
No 392
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=45.53 E-value=1.7e+02 Score=37.43 Aligned_cols=225 Identities=19% Similarity=0.162 Sum_probs=115.6
Q ss_pred CCChHHHHHHHHHHHHHHcc--CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc---HHHHHHHHHHHC
Q 000160 453 FPLREYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV---MLNWETEFLKWC 527 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~--~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL---L~NWe~EfkKw~ 527 (1992)
...|++|..-+.-|+.--.. ..+.+|--..|.|||..+-.++.++. -|+..|.+--. -.-|+.=+.+--
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHHHHHHhc
Confidence 45799999999877642222 12347888999999999999888761 25555655421 222444443331
Q ss_pred CCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-----
Q 000160 528 PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF----- 602 (1992)
Q Consensus 528 P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L----- 602 (1992)
..-+.|...+-. +.-+-+-..++.+-...-++-.--+||||-|..|+...+...+.++.+
T Consensus 82 ----~~d~dg~~~~~~-----------~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 82 ----LADKDGDKVEGD-----------AENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN 146 (438)
T ss_pred ----cCCCchhhhhhH-----------HHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC
Confidence 011112111110 000000011122211111122346899999999999998888888777
Q ss_pred ccceEEEEeccCCCCChHHHHHHHHHhCCCC--CC--ChHHHHHHhcCCCCCcccccccccHH-HHHHHHHhhhHhhhh-
Q 000160 603 NSKRRILLTGTPLQNDLMELWSLMHFLMPHI--FQ--SHQEFKDWFCNPISGMVEGQEKVNKE-VVDRLHNVLRPFILR- 676 (1992)
Q Consensus 603 ~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~i--f~--s~~eF~ewFs~Pi~g~~e~~~~~~~e-~v~rLhkvLrpFmLR- 676 (1992)
...-+++++.++..+...-= +..+.|-. |. +..+-+.-+..--.+ ..+.. ..+-||-++++|...
T Consensus 147 ~~~i~iils~~~~e~~y~~n---~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~------~r~~~~ya~fl~v~l~vF~~~c 217 (438)
T KOG2543|consen 147 EPTIVIILSAPSCEKQYLIN---TGTLEIVVLHFPQYSVEETQVILSRDNPG------KRKLDVYAQFLHVLLQVFYMAC 217 (438)
T ss_pred CCceEEEEeccccHHHhhcc---cCCCCceEEecCCCCHHHHHHHHhcCCcc------ccchHHHHHHHHHHHHHHHHHh
Confidence 23568888888875432210 11111111 11 122333322211100 11111 234577777777521
Q ss_pred hh----hhhhhhcCCCceeEEEEecCCHHH-HHHHH
Q 000160 677 RL----KRDVEKQLPMKQEHVIYCRLSKRQ-RNLYE 707 (1992)
Q Consensus 677 Rt----K~DVekqLP~K~E~VV~c~LS~~Q-r~LYd 707 (1992)
|. ..-+....|+..+.++.-..++.. +.+|.
T Consensus 218 rd~~eL~~~~~~~wpky~epi~~~~i~~~d~~~L~r 253 (438)
T KOG2543|consen 218 RDVNELRSLISLAWPKYCEPITKGKIDPTDKARLWR 253 (438)
T ss_pred CCHHHHHHHHHHHHHhhccccccCCCChhHHHHHHH
Confidence 11 111223588888888888888887 34443
No 393
>PRK04132 replication factor C small subunit; Provisional
Probab=45.48 E-value=82 Score=44.21 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=30.1
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc----ccceEEEEeccCCCCChHHHHH
Q 000160 576 KWKYLILDEAHLIKNWKSQRWQTLLNF----NSKRRILLTGTPLQNDLMELWS 624 (1992)
Q Consensus 576 ~W~~LILDEAH~IKN~~Sq~~qaLl~L----~a~rRLLLTGTPLQNsL~ELwS 624 (1992)
++.+|||||||++-. ....+|+.+ ....+++|+.++...-+.-|-|
T Consensus 630 ~~KVvIIDEaD~Lt~---~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQ---DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCH---HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 578999999999943 233444443 4567888888876544444443
No 394
>PRK10824 glutaredoxin-4; Provisional
Probab=45.45 E-value=79 Score=33.80 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=43.8
Q ss_pred CCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEecccccc
Q 000160 1012 GHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 1012 G~KVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAGG~ 1076 (1992)
.++|+||+. +-.........|+..|+.|..++=....+-|+. |..+.. ..=..|||=....||.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~-l~~~sg~~TVPQIFI~G~~IGG~ 84 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAE-LPKYANWPTFPQLWVDGELVGGC 84 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHH-HHHHhCCCCCCeEEECCEEEcCh
Confidence 579999997 455778888889888988776665545555555 444433 3445677777777764
No 395
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=45.07 E-value=78 Score=43.83 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.2
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAML 494 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALL 494 (1992)
+.||.-+.|.|||..+-++.
T Consensus 54 slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67999999999997665554
No 396
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=44.89 E-value=30 Score=41.46 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCcEEEE--ecCCcH
Q 000160 482 MGLGKTIMTIAMLAHLACEKGIWGPHLIV--VPTSVM 516 (1992)
Q Consensus 482 MGLGKTIQtIALLa~La~ekg~~GP~LIV--VPtSLL 516 (1992)
=|.|||-.|.+|...|... | .++|+| .|.+++
T Consensus 11 GGvG~TTltAnLA~aL~~~-G--~~VlaID~dpqN~L 44 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARL-G--ESVLAIDLDPQNLL 44 (243)
T ss_pred CCCCHHHHHHHHHHHHHHC-C--CcEEEEeCCcHHHH
Confidence 4899999998888877653 3 366666 465555
No 397
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=44.55 E-value=93 Score=39.33 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.4
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
..|.+|.-..|.|||..+-++...+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4567899999999998887765543
No 398
>PRK14873 primosome assembly protein PriA; Provisional
Probab=44.35 E-value=97 Score=42.51 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=66.5
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHH-cC-CcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL-YG-YTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1071 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~-~G-i~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLST 1071 (1992)
.|||-..+..++......|..+||...-......+...|.. .| ..+..+++..+..+|...-.+... +.+.| ++.|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-G~~~I-ViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-GQARV-VVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-CCCcE-EEEc
Confidence 58999999999999999999999999988888888887754 34 679999999999999988888764 66666 6777
Q ss_pred ccc
Q 000160 1072 RSG 1074 (1992)
Q Consensus 1072 rAG 1074 (1992)
|++
T Consensus 248 RSA 250 (665)
T PRK14873 248 RSA 250 (665)
T ss_pred cee
Confidence 875
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=44.30 E-value=3.7e+02 Score=29.91 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHHH
Q 000160 477 ILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ 499 (1992)
++.-..|.|||..+..+...+..
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 56778999999999888877764
No 400
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=44.09 E-value=70 Score=37.84 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=34.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhc---------CCCCcEEEEe---cCCcHHHHHHHHHHH
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEK---------GIWGPHLIVV---PTSVMLNWETEFLKW 526 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ek---------g~~GP~LIVV---PtSLL~NWe~EfkKw 526 (1992)
|+|+-.-|.|||..++.++++.+.-. ...+++|++. |...+.+-...+...
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQH 66 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhh
Confidence 78999999999999999988776422 1345677777 444444444444433
No 401
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=44.05 E-value=91 Score=38.29 Aligned_cols=129 Identities=17% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC--cHHH-HH--HHHHHHCCC-CeEEEEeCchhHHHHhhhccCCCCC
Q 000160 481 EMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS--VMLN-WE--TEFLKWCPA-FKILTYFGSAKERKFKRQGWLKPNS 554 (1992)
Q Consensus 481 EMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS--LL~N-We--~EfkKw~P~-lKVL~Y~Gs~keRk~kr~gw~k~~~ 554 (1992)
--|+|||..+..++...+...+. +..+|++|+. +..+ |. ..+..+.+. +.+..- . . ..+..+. ++.
T Consensus 5 ~r~~GKT~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~-~nG 76 (384)
T PF03237_consen 5 GRGSGKTTLIAIWFLWWALTRPP-GRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFN-E-W----NDRKIIL-PNG 76 (384)
T ss_dssp -SSS-HHHHHHHHHHHHHHSSSS---EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EE-E-E-----SSEEEE-TTS
T ss_pred CccccHHHHHHHHHHHHHhhCCC-CcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccc-c-C----CCCcEEe-cCc
Confidence 47999999987766666554433 3567777774 2221 21 122222222 222111 0 0 0011111 233
Q ss_pred ceEEEEeehhhhhchhhhhccCccEEEEcCccccCChh-hHHHHHHHhcccceE-EEEeccCCCCC
Q 000160 555 FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWK-SQRWQTLLNFNSKRR-ILLTGTPLQND 618 (1992)
Q Consensus 555 fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~-Sq~~qaLl~L~a~rR-LLLTGTPLQNs 618 (1992)
..|.+.++..- .....++-..++.||+||+-.+.+.. +.....+..-..... ++.|.||-.++
T Consensus 77 ~~i~~~~~~~~-~~~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 77 SRIQFRGADSP-DSGDNIRGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIRMYISTPPNPGG 141 (384)
T ss_dssp -EEEEES------SHHHHHTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---SSS
T ss_pred eEEEEeccccc-cccccccccccceeeeeecccCchHHHHHHHHhhhhcccCcceEEeecCCCCCC
Confidence 33444443321 13455677889999999988886532 222222222233333 35555554443
No 402
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=43.96 E-value=1e+02 Score=36.63 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCcEEEEe--cCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEE
Q 000160 482 MGLGKTIMTIAMLAHLACEKGIWGPHLIVV--PTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCI 559 (1992)
Q Consensus 482 MGLGKTIQtIALLa~La~ekg~~GP~LIVV--PtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVI 559 (1992)
=|.|||..++.|...++. .| .+++||= |..-+..|...... . ..|. ..+++..
T Consensus 11 GGvGKTT~a~nLA~~la~-~G--~~VlliD~DpQ~s~~~w~~~~~~---~-----------------~~~~--~~~~~~~ 65 (231)
T PRK13849 11 GGAGKTTALMGLCAALAS-DG--KRVALFEADENRPLTRWKENALR---S-----------------NTWD--PACEVYA 65 (231)
T ss_pred CCccHHHHHHHHHHHHHh-CC--CcEEEEeCCCCCCHHHHHHhhcc---c-----------------cCCC--ccceecC
Confidence 489999999998888875 33 2566662 66677788642110 0 0010 0011110
Q ss_pred -EeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHh
Q 000160 560 -TTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFL 629 (1992)
Q Consensus 560 -TSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL 629 (1992)
.....+......+....++|||||=.-.. +.....++. .+...+ +|++-+..++++.+.++
T Consensus 66 ~~~~~~l~~~l~~~~~~~yD~iiID~pp~~----~~~~~~al~-~aD~vl----iP~~ps~~d~~~~~~~~ 127 (231)
T PRK13849 66 ADELPLLEAAYEDAELQGFDYALADTHGGS----SELNNTIIA-SSNLLL----IPTMLTPLDIDEALSTY 127 (231)
T ss_pred CCHHHHHHHHHHHHhhCCCCEEEEeCCCCc----cHHHHHHHH-HCCEEE----EeccCcHHHHHHHHHHH
Confidence 01111222122233346999999955543 222222222 344443 58888888888887776
No 403
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=43.90 E-value=82 Score=41.06 Aligned_cols=138 Identities=18% Similarity=0.173 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHC-------CC-CeEEEEeCch---hHHHH----h
Q 000160 482 MGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWC-------PA-FKILTYFGSA---KERKF----K 545 (1992)
Q Consensus 482 MGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N-We~EfkKw~-------P~-lKVL~Y~Gs~---keRk~----k 545 (1992)
.|.|||+.-..=+++|...++.| .++|-+=+-.+.+ ...-+.+|| |. -++++.||.. ++.-. .
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~-~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~ 263 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDS-RIAFTFFTKILASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRY 263 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCc-eEEEEeehHHHHHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHH
Confidence 69999988776677776655555 5677776654444 333333333 32 2334433321 11000 0
Q ss_pred hhccCC--CCCceEEE-EeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-ccceEEEEeccCCCCChHH
Q 000160 546 RQGWLK--PNSFHVCI-TTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRILLTGTPLQNDLME 621 (1992)
Q Consensus 546 r~gw~k--~~~fdVVI-TSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-~a~rRLLLTGTPLQNsL~E 621 (1992)
+.+.++ ...+.+-. .--+.++++... +.-++||.+||+|-+ -...+..|+.+ +...||..-+ .|
T Consensus 264 ~~~~~~~~fsg~g~~F~~aC~eli~~~~~--~~~yD~ilIDE~QDF---P~~F~~Lcf~~tkd~KrlvyAy-------De 331 (660)
T COG3972 264 ICHYYEIPFSGFGNGFDAACKELIADINN--KKAYDYILIDESQDF---PQSFIDLCFMVTKDKKRLVYAY-------DE 331 (660)
T ss_pred HhcccccccCCCCcchHHHHHHHHHhhhc--cccccEEEecccccC---CHHHHHHHHHHhcCcceEEEeh-------Hh
Confidence 000000 00111100 000112222222 456899999999965 44556666655 3446666654 55
Q ss_pred HHHHHHHhCCC
Q 000160 622 LWSLMHFLMPH 632 (1992)
Q Consensus 622 LwSLL~FL~P~ 632 (1992)
|.+|.++-|+.
T Consensus 332 lQnls~~~m~p 342 (660)
T COG3972 332 LQNLSNVKMRP 342 (660)
T ss_pred hhcccccCCCC
Confidence 66666766654
No 404
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.54 E-value=92 Score=41.88 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHHHHccCccEEEEcCCCChHHHHHHHHHH
Q 000160 465 WLVTMYEKRLNGILADEMGLGKTIMTIAMLA 495 (1992)
Q Consensus 465 WLvslye~~lgGILADEMGLGKTIQtIALLa 495 (1992)
-|++..+.+.-.|+.-|+|.|||-|.--+|.
T Consensus 363 ~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ 393 (1042)
T KOG0924|consen 363 QLLSVIRENQVVVIVGETGSGKTTQLAQYLY 393 (1042)
T ss_pred HHHHHHhhCcEEEEEecCCCCchhhhHHHHH
Confidence 4666666777789999999999999765543
No 405
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=43.39 E-value=1.3e+02 Score=42.82 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=69.6
Q ss_pred Cccccc--cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH----HcCCcEEEecCCCCHHHHHHHHHHHhc
Q 000160 987 DRRLIQ--FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGYTYMRLDGSTQPEERQTLMQRFNT 1060 (1992)
Q Consensus 987 d~rLiq--~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~----~~Gi~y~RLDGsts~eqRq~lIerFN~ 1060 (1992)
-.++++ ..+||-.+....+-.....|.+|+|.+..+....-....++ ..+++...+.|.++..++..+++.+..
T Consensus 473 ~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~ 552 (926)
T TIGR00580 473 MDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS 552 (926)
T ss_pred CCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc
Confidence 344554 45899876655444444567899999999887776555543 347788899999998899999988875
Q ss_pred CCCceEEEEeccccccccCCccCCEEEE
Q 000160 1061 NPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1061 D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
+.+.|+|.+.+.....+.+..-..||+
T Consensus 553 -g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 553 -GKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred -CCceEEEchHHHhhCCCCcccCCEEEe
Confidence 466675555544444566666666555
No 406
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=43.25 E-value=1.1e+02 Score=37.68 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 460 HIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 460 ~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
...+.-|...+..+. .-++.-+-|.|||..+.++...+.|..
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~ 54 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKS 54 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 333444444444332 337899999999999999998888753
No 407
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=42.75 E-value=34 Score=41.23 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=17.2
Q ss_pred HHHHHHHHHccCccEEEEcCCCChHHHHH
Q 000160 462 GLDWLVTMYEKRLNGILADEMGLGKTIMT 490 (1992)
Q Consensus 462 GL~WLvslye~~lgGILADEMGLGKTIQt 490 (1992)
.+++|...-.....+|++ +.|.|||..+
T Consensus 6 ~id~~~~i~~Gqr~~I~G-~~G~GKTTLl 33 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVA-PPKAGKTTLL 33 (249)
T ss_pred heeeecccCCCCEEEEEC-CCCCCHHHHH
Confidence 456666554434444555 5999999544
No 408
>CHL00095 clpC Clp protease ATP binding subunit
Probab=42.40 E-value=86 Score=44.13 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=26.7
Q ss_pred hHHHHHHHH-HHHHHHccCccEEEEcCCCChHHHHHHHHHHHHH
Q 000160 456 REYQHIGLD-WLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 456 RpYQ~~GL~-WLvslye~~lgGILADEMGLGKTIQtIALLa~La 498 (1992)
|+.+..-+- +|.. ....|-||.-+.|.|||..+-+|...+.
T Consensus 184 r~~ei~~~~~~L~r--~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 184 REKEIERVIQILGR--RTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cHHHHHHHHHHHcc--cccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 555544443 3332 2344779999999999998877765543
No 409
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=42.35 E-value=1.1e+02 Score=41.35 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=73.0
Q ss_pred cccccCCccccccc--cchHHHHHHHHHHHhhCCCeEEEEeCch----HHHHHHHHHHHHcCCcEEEecCCCCHHHHHHH
Q 000160 981 RQVYFPDRRLIQFD--CGKLQELAILLRKLKSDGHRALIFTQMT----KMLDILEEFISLYGYTYMRLDGSTQPEERQTL 1054 (1992)
Q Consensus 981 ~~~~fPd~rLiq~d--SgKLq~L~~LL~kLks~G~KVLIFSQ~t----~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~l 1054 (1992)
+.-..|-.||+|.| |||--+..--+-.....|-.+.+...-- ...+-+..+|.-.|+++..|.|+++..+|.++
T Consensus 278 l~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~ 357 (677)
T COG1200 278 LASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEI 357 (677)
T ss_pred hcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHH
Confidence 34456677898876 8886554444444456677887766532 23456788888889999999999999999999
Q ss_pred HHHHhcCCCceEEEEecccc-ccccCCccCCEEE
Q 000160 1055 MQRFNTNPKIFLFILSTRSG-GVGINLVGADTVI 1087 (1992)
Q Consensus 1055 IerFN~D~~ifVfLLSTrAG-G~GLNLT~AdtVI 1087 (1992)
+++-.+ +.+.++ +.|.|. -..+++...--||
T Consensus 358 l~~l~~-G~~~iv-VGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 358 LEQLAS-GEIDIV-VGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred HHHHhC-CCCCEE-EEcchhhhcceeecceeEEE
Confidence 999864 677774 555554 4455555544444
No 410
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=42.22 E-value=2.1e+02 Score=35.58 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHHH----ccCccEEEEcCCCChHHHHHHHHHHHH
Q 000160 455 LREYQHIGLDWLVTMY----EKRLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 455 LRpYQ~~GL~WLvsly----e~~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
-++....-+.-++... ....+.+|.-..|.|||..+-++...+
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 3555555554333322 112356889999999998777554433
No 411
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=41.76 E-value=1.3e+02 Score=43.44 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=72.6
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeE
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKI 532 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKV 532 (1992)
..|-+-|..++..+.. ...-.+|---.|.|||.+.-+++..+. ..| ..++.++|+...-+ .+..-+ ++..
T Consensus 380 ~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~~~~e-~~G--~~V~g~ApTgkAA~---~L~e~~-Gi~a 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAAREAWE-AAG--YRVVGGALAGKAAE---GLEKEA-GIQS 449 (1102)
T ss_pred CCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEcCcHHHHH---HHHHhh-CCCe
Confidence 5799999999987642 233356666799999987776655443 233 36777788865443 222211 2222
Q ss_pred EEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-ccceEEEEe
Q 000160 533 LTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRILLT 611 (1992)
Q Consensus 533 L~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-~a~rRLLLT 611 (1992)
.+++.- ...|.. ....+ ..-.+||||||..+-+. .....+... .+..+++|.
T Consensus 450 ~TIas~-------ll~~~~----------------~~~~l--~~~~vlVIDEAsMv~~~--~m~~Ll~~~~~~garvVLV 502 (1102)
T PRK13826 450 RTLSSW-------ELRWNQ----------------GRDQL--DNKTVFVLDEAGMVASR--QMALFVEAVTRAGAKLVLV 502 (1102)
T ss_pred eeHHHH-------Hhhhcc----------------CccCC--CCCcEEEEECcccCCHH--HHHHHHHHHHhcCCEEEEE
Confidence 221110 001100 00001 12468999999999532 223333333 367899999
Q ss_pred ccCCCCC
Q 000160 612 GTPLQND 618 (1992)
Q Consensus 612 GTPLQNs 618 (1992)
|=|-|-.
T Consensus 503 GD~~QL~ 509 (1102)
T PRK13826 503 GDPEQLQ 509 (1102)
T ss_pred CCHHHcC
Confidence 9998754
No 412
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.61 E-value=1.4e+02 Score=37.32 Aligned_cols=132 Identities=16% Similarity=0.134 Sum_probs=70.8
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEE--ecCCcH--HHHHHHHHHHCC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV--VPTSVM--LNWETEFLKWCP 528 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIV--VPtSLL--~NWe~EfkKw~P 528 (1992)
++..+.|..-| ....+.+.+.|++-++|.|||-...|++...... .+.+.| .|--.+ .||...+-+
T Consensus 126 gt~~~~~~ayL---~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~----~rivtIEdt~E~~~~~~n~~~l~~r--- 195 (312)
T COG0630 126 GTISPEQAAYL---WLAIEARKSIIICGGTASGKTTLLNALLDFIPPE----ERIVTIEDTPELKLPHENWVQLVTR--- 195 (312)
T ss_pred CCCCHHHHHHH---HHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCch----hcEEEEeccccccCCCCCEEEEEec---
Confidence 45555555543 3344678899999999999998888877654321 121211 111111 122111110
Q ss_pred CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEE
Q 000160 529 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI 608 (1992)
Q Consensus 529 ~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRL 608 (1992)
.. .....=|+.+.++ ..-.|.+.+|+|++|.+- -..+-.+..+++.+
T Consensus 196 ---------~~-------------~~~~~~v~~~dll----~aalR~rPd~IivgEvrg-----~e~~~~~~a~~tGh-- 242 (312)
T COG0630 196 ---------EG-------------ESGSSEVSLEDLL----RAALRQRPDYIIVGELRG-----REAFVLFQAMQTGH-- 242 (312)
T ss_pred ---------CC-------------CCCccccCHHHHH----HHHHhcCCCeEEEeeeec-----HHHHHHHHHHhcCC--
Confidence 00 0000112222222 234467899999999972 23445556666666
Q ss_pred EEeccCCCCChHHHHHHHH
Q 000160 609 LLTGTPLQNDLMELWSLMH 627 (1992)
Q Consensus 609 LLTGTPLQNsL~ELwSLL~ 627 (1992)
.--.|....+...+..-|.
T Consensus 243 ~~isT~ha~s~~~~~~rl~ 261 (312)
T COG0630 243 GTISTIHADSPELVLDRLT 261 (312)
T ss_pred CceeEEecCCHHHHHHHHh
Confidence 5555777777777665444
No 413
>PRK10865 protein disaggregation chaperone; Provisional
Probab=41.56 E-value=83 Score=44.45 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=25.6
Q ss_pred HHHHHHHH--ccCccEEEEcCCCChHHHHHHHHHHHH
Q 000160 463 LDWLVTMY--EKRLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 463 L~WLvsly--e~~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
+..++... +...|.||.-+.|.|||..+-+|...+
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 66666532 344588999999999999887766554
No 414
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=41.45 E-value=18 Score=34.82 Aligned_cols=19 Identities=26% Similarity=0.705 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCChhHHHH
Q 000160 1599 AILCAVVHEYGPNWSLVSD 1617 (1992)
Q Consensus 1599 ~~l~~~v~~~g~nw~l~~~ 1617 (1992)
++|..|.+-||.||.||-|
T Consensus 30 ~vl~~LL~lY~~nW~lIEe 48 (65)
T PF10440_consen 30 PVLKNLLKLYDGNWELIEE 48 (65)
T ss_pred HHHHHHHHHHcCCchhhhc
Confidence 7899999999999999987
No 415
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=41.28 E-value=1.4e+02 Score=39.05 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=33.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 525 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkK 525 (1992)
-+|+-++|.|||..++.++..++.. + +++|.|..---..|......+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~-g--~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKN-Q--MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc-C--CcEEEEECcCCHHHHHHHHHH
Confidence 3789999999999999887776542 2 578888876556665544444
No 416
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=41.21 E-value=79 Score=44.68 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHc--cCccEEEEcCCCChHHHHHHHHHHHH
Q 000160 463 LDWLVTMYE--KRLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 463 L~WLvslye--~~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
+.+|+.... ...|.||--+.|.|||..+-+|...+
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 666665432 34578999999999999887766554
No 417
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.07 E-value=7.7e+02 Score=33.35 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=17.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHH
Q 000160 477 ILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ 499 (1992)
+|.-..|.|||..+..|...+..
T Consensus 354 aLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 354 ALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 45667999999888777665543
No 418
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=40.90 E-value=1.4e+02 Score=37.38 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHHHHccCccE-EEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 455 LREYQHIGLDWLVTMYEKRLNG-ILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgG-ILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
++|+|...-.-|...+.+-..+ |+.-..|+|||..+..+...+.|..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~ 50 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETP 50 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4677777766676665544444 58999999999999999999999654
No 419
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=40.78 E-value=52 Score=33.13 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=43.1
Q ss_pred CCChhhhHHHHHHHHhc-------CC------ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhh
Q 000160 1592 VWLPQEDAILCAVVHEY-------GP------NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1651 (1992)
Q Consensus 1592 ~w~~~ed~~l~~~v~~~-------g~------nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1651 (1992)
.|++..+++|+.++.+. +. .|.-|...|+. .-|...+..||+-||+.|-..|..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~------~~~~~~t~~qlknk~~~lk~~y~~ 67 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNE------KTGLNYTKKQLKNKWKTLKKDYRI 67 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHH------HhCCcccHHHHHHHHHHHHHHHHH
Confidence 59999999999988765 11 39999998855 445667789999999999888764
No 420
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.13 E-value=1.7e+02 Score=37.54 Aligned_cols=39 Identities=21% Similarity=0.139 Sum_probs=25.1
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP 512 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVP 512 (1992)
+..-+|.-..|.|||.++..|...+....|. .++.+|.-
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~ 175 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTT 175 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEec
Confidence 3345778899999998887777665433332 24455543
No 421
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=39.87 E-value=70 Score=37.57 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=34.7
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe----cCCcHHHHHH
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV----PTSVMLNWET 521 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV----PtSLL~NWe~ 521 (1992)
..+.-.+|+-..|.|||..++.++.+.+...+ .++|++. |.-++..+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~E~~~~~~~~r~~~ 63 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSLEMSKEQLLQRLLA 63 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeCCCCHHHHHHHHHH
Confidence 33444588999999999999999888876533 3788887 3445555543
No 422
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=39.73 E-value=37 Score=36.42 Aligned_cols=57 Identities=26% Similarity=0.446 Sum_probs=43.1
Q ss_pred CCCCChhhhHHHHHHHHhcCC----ChhHHHHHhhccccCccccc----cccCchhhHHHHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYRG----RYRHPVHCCERFRELIQRY 1649 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~~----~~r~~~~c~~r~~~~~~~~ 1649 (1992)
+..||..||..|...||+||= +|+.|-+.+ ..+..++- .-|+|....-|=..|+.-.
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I---r~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI---RESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH---HH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH---HhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 568999999999999999998 799999988 44433442 4589999999988888643
No 423
>PHA00350 putative assembly protein
Probab=39.72 E-value=55 Score=42.01 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=15.4
Q ss_pred cCCCChHHHHHHHHHHHHHHhcC
Q 000160 480 DEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 480 DEMGLGKTIQtIALLa~La~ekg 502 (1992)
--.|.|||+-++.....-+...|
T Consensus 8 G~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 8 GRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred cCCCCchhHHHHHHHHHHHHHCC
Confidence 34899999999985443333333
No 424
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=38.52 E-value=36 Score=38.87 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=22.1
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 478 LADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 478 LADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
..-.|+.|||...|..+..+.. .| .++||+-|.
T Consensus 6 i~GpM~sGKS~eLi~~~~~~~~-~~--~~v~~~kp~ 38 (176)
T PF00265_consen 6 ITGPMFSGKSTELIRRIHRYEI-AG--KKVLVFKPA 38 (176)
T ss_dssp EEESTTSSHHHHHHHHHHHHHH-TT---EEEEEEES
T ss_pred EECCcCChhHHHHHHHHHHHHh-CC--CeEEEEEec
Confidence 3457999999988877765533 22 356777775
No 425
>PHA02244 ATPase-like protein
Probab=38.46 E-value=1.9e+02 Score=37.10 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.4
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHH
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAH 496 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~ 496 (1992)
..+.+.+|.-++|.|||..+-++...
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999888776554
No 426
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=38.21 E-value=71 Score=39.91 Aligned_cols=95 Identities=20% Similarity=0.215 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhc
Q 000160 490 TIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD 568 (1992)
Q Consensus 490 tIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD 568 (1992)
...|+.++........|+||.+|. ..+.+-..-+++-+|..++...+.....|+.+-+ |...+.++++|||-=+ .+.
T Consensus 291 ~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~-~fR~G~~~lLiTTTIL-ERG 368 (441)
T COG4098 291 PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVE-AFRDGKITLLITTTIL-ERG 368 (441)
T ss_pred CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHH-HHHcCceEEEEEeehh-hcc
Confidence 456677776666667899999999 5677788888888999999888888888887655 4566788999988522 221
Q ss_pred hhhhhccCccEEEEcCccccC
Q 000160 569 SKVFKRKKWKYLILDEAHLIK 589 (1992)
Q Consensus 569 ~~~f~r~~W~~LILDEAH~IK 589 (1992)
-.| .+.+..||+=-|++-
T Consensus 369 -VTf--p~vdV~Vlgaeh~vf 386 (441)
T COG4098 369 -VTF--PNVDVFVLGAEHRVF 386 (441)
T ss_pred -ccc--ccceEEEecCCcccc
Confidence 112 346888888777664
No 427
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.90 E-value=3.5e+02 Score=35.36 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=65.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe-cC-CcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV-PT-SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNS 554 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV-Pt-SLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~ 554 (1992)
++.-..|.|||.++.-|.+++....|. .++||. -+ ..-..| .+++|+....+-.+
T Consensus 227 ~lvGptGvGKTTtaaKLA~~~~~~~G~--~V~Lit~Dt~R~aA~e--QLk~yAe~lgvp~~------------------- 283 (432)
T PRK12724 227 FFVGPTGSGKTTSIAKLAAKYFLHMGK--SVSLYTTDNYRIAAIE--QLKRYADTMGMPFY------------------- 283 (432)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCC--eEEEecccchhhhHHH--HHHHHHHhcCCCee-------------------
Confidence 466789999999988887766444332 344443 22 223344 34444322111111
Q ss_pred ceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc--------ccceEEEEeccCCCCChHHHHHHH
Q 000160 555 FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF--------NSKRRILLTGTPLQNDLMELWSLM 626 (1992)
Q Consensus 555 fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L--------~a~rRLLLTGTPLQNsL~ELwSLL 626 (1992)
....+..-...+.+...++||||=+-+.-+.. .....+..+ .....|.|++|==++.+.+....+
T Consensus 284 ------~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 284 ------PVKDIKKFKETLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred ------ehHHHHHHHHHHHhCCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 00001111223344578999999776553222 222222221 234668889987777777766655
Q ss_pred HHhCCC
Q 000160 627 HFLMPH 632 (1992)
Q Consensus 627 ~FL~P~ 632 (1992)
..+.+.
T Consensus 357 ~~~~~~ 362 (432)
T PRK12724 357 ESLNYR 362 (432)
T ss_pred cCCCCC
Confidence 555443
No 428
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=37.61 E-value=74 Score=40.90 Aligned_cols=110 Identities=12% Similarity=0.252 Sum_probs=75.4
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeC-chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQ-MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ-~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
++-|.++...+..+.+.|.+||+... |-.+..++..+|...|+.+..+|.+....-..+++.
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~----------------- 147 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE----------------- 147 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-----------------
Confidence 44566666656566666777777765 888889999999999999888887776333222221
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
.--.+||++++-||.+..+=+.++-|+..... ..+|.-||+=-=++++
T Consensus 148 --------~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g---~~vvVDNTfatP~~q~ 195 (396)
T COG0626 148 --------PNTKLVFLETPSNPLLEVPDIPAIARLAKAYG---ALVVVDNTFATPVLQR 195 (396)
T ss_pred --------cCceEEEEeCCCCcccccccHHHHHHHHHhcC---CEEEEECCcccccccC
Confidence 12457999999999998887777666655444 4467778876555544
No 429
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=37.38 E-value=87 Score=46.68 Aligned_cols=141 Identities=15% Similarity=0.029 Sum_probs=75.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHh-cCCCCcEEEEecCCcHHHHHHHHHHH
Q 000160 448 PFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACE-KGIWGPHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 448 P~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~e-kg~~GP~LIVVPtSLL~NWe~EfkKw 526 (1992)
+..+...|-+-|+.++.-+++- ...-.+|---.|.|||.+.-+++..+... ......++.++|+.-..+=..+.
T Consensus 829 ~~~~~~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~--- 903 (1623)
T PRK14712 829 PGELMEKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSA--- 903 (1623)
T ss_pred hhhhhcccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHh---
Confidence 3344457999999999876642 23346777779999998875555543221 11112466788986554322221
Q ss_pred CCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcc-cc
Q 000160 527 CPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFN-SK 605 (1992)
Q Consensus 527 ~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~-a~ 605 (1992)
++...+.+ .+. .+. ..+ .. ........-.+||||||-++-+.. ..+.+..+. ..
T Consensus 904 --Gi~A~TIa------sfL--~~~--~~~----------~~-~~~~~~~~~~llIVDEASMV~~~~--m~~ll~~~~~~g 958 (1623)
T PRK14712 904 --GVDAQTLA------SFL--HDT--QLQ----------QR-SGETPDFSNTLFLLDESSMVGNTD--MARAYALIAAGG 958 (1623)
T ss_pred --CchHhhHH------HHh--ccc--cch----------hh-cccCCCCCCcEEEEEccccccHHH--HHHHHHhhhhCC
Confidence 11111110 000 000 000 00 000001234799999999996532 333333333 35
Q ss_pred eEEEEeccCCCCC
Q 000160 606 RRILLTGTPLQND 618 (1992)
Q Consensus 606 rRLLLTGTPLQNs 618 (1992)
.|++|.|=|-|..
T Consensus 959 arvVLVGD~~QL~ 971 (1623)
T PRK14712 959 GRAVASGDTDQLQ 971 (1623)
T ss_pred CEEEEEcchhhcC
Confidence 7999999887754
No 430
>PHA02518 ParA-like protein; Provisional
Probab=36.68 E-value=1.5e+02 Score=33.71 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=27.8
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCCcEEEE--ecCCcHHHHHH
Q 000160 480 DEMGLGKTIMTIAMLAHLACEKGIWGPHLIV--VPTSVMLNWET 521 (1992)
Q Consensus 480 DEMGLGKTIQtIALLa~La~ekg~~GP~LIV--VPtSLL~NWe~ 521 (1992)
.-=|.|||..++.|...++. .| .++|+| -|-.-+..|..
T Consensus 8 ~KGGvGKTT~a~~la~~la~-~g--~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 8 QKGGAGKTTVATNLASWLHA-DG--HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHh-CC--CeEEEEeCCCCCChHHHHH
Confidence 34489999999988888775 33 356666 37777778854
No 431
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=36.63 E-value=1.4e+02 Score=32.91 Aligned_cols=82 Identities=15% Similarity=0.003 Sum_probs=56.7
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHc----CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLY----GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1069 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~----Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLL 1069 (1992)
...++..+..|+.+....|+||+|++.-...+..|-..|=.. -+.+.+..+.. .....|+|
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~--------------~~~~PV~l- 75 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP--------------AAGQPVLL- 75 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC--------------CCCCCEEE-
Confidence 356899999999999999999999999999999999999321 22333322221 12344544
Q ss_pred eccccccccCCccCCEEEEecCCC
Q 000160 1070 STRSGGVGINLVGADTVIFYDSDW 1093 (1992)
Q Consensus 1070 STrAGG~GLNLT~AdtVIfyD~dW 1093 (1992)
+. +..-|..+++.+|++++.+
T Consensus 76 ~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 76 TW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred Ec---CCCCCCCCCcEEEECCCCC
Confidence 31 1134667788899998865
No 432
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=36.32 E-value=3e+02 Score=33.01 Aligned_cols=38 Identities=26% Similarity=0.552 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCcEEEE-e-cCCcHHHHHHHH
Q 000160 483 GLGKTIMTIAMLAHLACEKGIWGPHLIV-V-PTSVMLNWETEF 523 (1992)
Q Consensus 483 GLGKTIQtIALLa~La~ekg~~GP~LIV-V-PtSLL~NWe~Ef 523 (1992)
|.|||-.+++|...++.. | ++++|| + |..-+..|..--
T Consensus 12 GaGKTT~~~~LAs~la~~-G--~~V~lIDaDpn~pl~~W~~~a 51 (231)
T PF07015_consen 12 GAGKTTAAMALASELAAR-G--ARVALIDADPNQPLAKWAENA 51 (231)
T ss_pred CCcHHHHHHHHHHHHHHC-C--CeEEEEeCCCCCcHHHHHHhc
Confidence 899999888888877653 3 355555 3 788888996543
No 433
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=36.28 E-value=57 Score=44.54 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecC-CcHHHHHHHHHHHC
Q 000160 455 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPT-SVMLNWETEFLKWC 527 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~-~GP~LIVVPt-SLL~NWe~EfkKw~ 527 (1992)
|.+-|+.++.+ . ..+.++---.|.|||-+.+.-++++....+. ...+|+|+.+ ....+-+..+.+.+
T Consensus 2 Ln~~Q~~av~~-----~-~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY-----V-TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC-----C-CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889888854 1 2334444459999999999999999865443 3446666655 44555555555544
No 434
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=36.08 E-value=2.6e+02 Score=38.18 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 000160 476 GILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La 498 (1992)
-+|.-..|+|||..+.|+..++.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57789999999998877666543
No 435
>PRK10689 transcription-repair coupling factor; Provisional
Probab=35.94 E-value=2e+02 Score=42.15 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=68.6
Q ss_pred cCCccccc--cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH----HcCCcEEEecCCCCHHHHHHHHHHH
Q 000160 985 FPDRRLIQ--FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGYTYMRLDGSTQPEERQTLMQRF 1058 (1992)
Q Consensus 985 fPd~rLiq--~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~----~~Gi~y~RLDGsts~eqRq~lIerF 1058 (1992)
.|..++++ ..+||-.+....+......|.+|||-+..+....-+...+. ..+++...+.|.++..++..++...
T Consensus 620 ~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l 699 (1147)
T PRK10689 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEA 699 (1147)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHH
Confidence 34445554 45899876554443344568899999998877655544443 3456777889999988999888887
Q ss_pred hcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1059 NTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1059 N~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
.. +.+.|+|.+.+....++++.....||+
T Consensus 700 ~~-g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 700 AE-GKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred Hh-CCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 64 456676666554444566666666655
No 436
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=35.67 E-value=1.4e+02 Score=28.23 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=41.5
Q ss_pred eEEEEe-CchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEe
Q 000160 1014 RALIFT-QMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILS 1070 (1992)
Q Consensus 1014 KVLIFS-Q~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLS 1070 (1992)
||.||+ .+-........+|+.+|+.|..++-....+.++++.+..+....+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 466776 445667788888999999999999888878888888777654244444443
No 437
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.37 E-value=2e+02 Score=39.21 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 459 QHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|...+.-|.+.+..+. .-||.-+.|.|||-.+..+...+.|..
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~ 67 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQN 67 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 4444444554444432 247899999999998888888887754
No 438
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=34.22 E-value=95 Score=43.10 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=16.7
Q ss_pred CccEEEEcCCCChHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAML 494 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALL 494 (1992)
+.|.+|.-..|.|||..+-++.
T Consensus 212 ~~giLL~GppGtGKT~laraia 233 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVA 233 (733)
T ss_pred CceEEEECCCCCChHHHHHHHH
Confidence 3466889999999997665543
No 439
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=34.10 E-value=68 Score=36.56 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=30.7
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 525 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkK 525 (1992)
+++.|-+|.-.+|.|||..++|+..++.. +|. +++.|. +..+..+++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~--~v~f~~----~~~L~~~l~~ 92 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-KGY--SVLFIT----ASDLLDELKQ 92 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT----EEEEE----HHHHHHHHHC
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc--ceeEee----cCceeccccc
Confidence 45667888889999999999998776644 443 455553 3445555543
No 440
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=34.02 E-value=7.4e+02 Score=34.82 Aligned_cols=267 Identities=19% Similarity=0.207 Sum_probs=123.6
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeE
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKI 532 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKV 532 (1992)
..|.+||+..+.=++. .-||++----|||=--..+.++... ...|.-+.|+- ..-|+.+ -|...++.
T Consensus 12 ~~lL~Ye~qv~~~ll~----~d~~L~V~a~GLsl~~l~~~~l~~~----s~~~sL~LvLN---~~~~ee~--~f~s~lk~ 78 (892)
T KOG0442|consen 12 MALLEYEQQVLLELLE----ADGNLLVLAPGLSLLRLVAELLILF----SPPGSLVLVLN---TQEAEEE--YFSSKLKE 78 (892)
T ss_pred cccchhHHHHHHhhhc----ccCceEEecCCcCHHHHHHHHHHHh----CCccceEEEec---CchhhHH--HHHHhcCc
Confidence 3488999998876652 3455665568888554444433322 22233233333 3446655 11111221
Q ss_pred EEEeCchh-HHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEE
Q 000160 533 LTYFGSAK-ERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRIL 609 (1992)
Q Consensus 533 L~Y~Gs~k-eRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLL 609 (1992)
...+-... ....+|...+-.++ |+..|-..+..|.- .+.--+..-++++=||.|.| .|+-.-.++-++.+++++
T Consensus 79 ~~~t~~~s~ls~~~R~~~Yl~GG--v~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~e-ts~eaFIlRl~R~knk~g 155 (892)
T KOG0442|consen 79 PLVTEDPSELSVNKRRSKYLEGG--VFFISSRILVVDLLTGRIPTEKITGILVLNAHTISE-TSQEAFILRLYRSKNKTG 155 (892)
T ss_pred CCCccChhhcchhhhHHhhhcCC--eEEeeeceeeeehhcCccchhHcceEEEechhhhhh-cchhHHHHHHHHHhcCCc
Confidence 11111111 11112221111122 55555555555521 22223567899999999987 445555566666666654
Q ss_pred E----eccCC--CCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCc----cccccccc---HHHHHHHHHhhhHhh--
Q 000160 610 L----TGTPL--QNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGM----VEGQEKVN---KEVVDRLHNVLRPFI-- 674 (1992)
Q Consensus 610 L----TGTPL--QNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~----~e~~~~~~---~e~v~rLhkvLrpFm-- 674 (1992)
. |--|- .-.+.-+-..|++|.....--+..|...+..++... ++..-... ..+-..|-.+++.++
T Consensus 156 fIkAFsd~P~sf~~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~~~~kVvei~V~~s~~~~~iQ~~lleii~~clre 235 (892)
T KOG0442|consen 156 FIKAFSDSPESFVSGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQLPPKVVEINVSMSNSMSQIQSHLLEIIKKCLRE 235 (892)
T ss_pred ceeccccCchhhhccchHHHHHHHHHHhhhheeccchHhHHhhhhccCCCceEEEEeecCccHHHHHHHHHHHHHHHHHH
Confidence 4 33332 122344555666664433333445555555544332 11111111 111122334444443
Q ss_pred hhhhhhh--hhhc-----CCC-------ceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHH
Q 000160 675 LRRLKRD--VEKQ-----LPM-------KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLR 735 (1992)
Q Consensus 675 LRRtK~D--Vekq-----LP~-------K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLR 735 (1992)
++|.-.. ++.. +-+ ..-+.++-.++..++.+-.|+-....--..+..-...+.+.++-.||
T Consensus 236 l~r~n~~~~~ee~~~E~~~~~sf~~i~~~~Ld~~wh~ls~ktkqlv~Dl~~LR~Ll~~L~~~D~vsfl~~l~tlr 310 (892)
T KOG0442|consen 236 LKRLNPELDMEEVNVENILDKSFDKILRSQLDPIWHQLSTKTKQLVNDLKTLRILLKSLVSYDAVSFLKILKTLR 310 (892)
T ss_pred HHhhCcccchhhcchhhcccccHHHHHHHhhchhhhhccHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4554433 2211 110 12233466778888888777654433333344444444455555554
No 441
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=33.99 E-value=1.2e+02 Score=35.72 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=33.9
Q ss_pred HHHcCCcEEEecCCC-------CHHHHH------HHHHHHhcCCCceEEEEe--ccc-ccc-------------ccCCcc
Q 000160 1032 ISLYGYTYMRLDGST-------QPEERQ------TLMQRFNTNPKIFLFILS--TRS-GGV-------------GINLVG 1082 (1992)
Q Consensus 1032 L~~~Gi~y~RLDGst-------s~eqRq------~lIerFN~D~~ifVfLLS--TrA-GG~-------------GLNLT~ 1082 (1992)
...++..++.||.=+ ....++ ..+.+|...-++.|++++ ++. ++. |.=-+.
T Consensus 119 ~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~ 198 (242)
T cd00984 119 KKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQD 198 (242)
T ss_pred HHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccC
Confidence 344588888888621 111222 223444445677777777 221 111 211357
Q ss_pred CCEEEEecCCC
Q 000160 1083 ADTVIFYDSDW 1093 (1992)
Q Consensus 1083 AdtVIfyD~dW 1093 (1992)
||.||++..+.
T Consensus 199 aD~vi~l~~~~ 209 (242)
T cd00984 199 ADVVMFLYRDE 209 (242)
T ss_pred CCEEEEEeccc
Confidence 99999998765
No 442
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=33.72 E-value=5.8e+02 Score=28.86 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=68.2
Q ss_pred cccchH-HHHHHHHHHHhh----CCCeEEEEeCchHHHHH----HHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCC
Q 000160 993 FDCGKL-QELAILLRKLKS----DGHRALIFTQMTKMLDI----LEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPK 1063 (1992)
Q Consensus 993 ~dSgKL-q~L~~LL~kLks----~G~KVLIFSQ~t~mLDI----Le~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ 1063 (1992)
..+||- ..+..++..+.. .+.|+||.+.....+.- +..+....++....+.|+++...+..... .+
T Consensus 45 TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 119 (203)
T cd00268 45 TGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK-----RG 119 (203)
T ss_pred CCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc-----CC
Confidence 368885 446666666654 35689999987665544 44445556888899999888655543332 34
Q ss_pred ceEEEEeccc----c-ccccCCccCCEEEEecCCC--ChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHH
Q 000160 1064 IFLFILSTRS----G-GVGINLVGADTVIFYDSDW--NPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENI 1129 (1992)
Q Consensus 1064 ifVfLLSTrA----G-G~GLNLT~AdtVIfyD~dW--NPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErI 1129 (1992)
..|++.+... . ..-+++...+.+|+=+.+. +.........-..++.+ .+..++..-|+-..+
T Consensus 120 ~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~----~~~~~~~SAT~~~~~ 188 (203)
T cd00268 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK----DRQTLLFSATMPKEV 188 (203)
T ss_pred CCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc----ccEEEEEeccCCHHH
Confidence 4565555321 1 1114555555555422221 22223333333334432 344455555554444
No 443
>PRK07952 DNA replication protein DnaC; Validated
Probab=33.70 E-value=1.5e+02 Score=35.76 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHc---cC-ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000160 457 EYQHIGLDWLVTMYE---KR-LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 525 (1992)
Q Consensus 457 pYQ~~GL~WLvslye---~~-lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkK 525 (1992)
+.|..++..+..... .+ .+-||.-..|.|||..+.|+..++.. .| .+++++ .+..|...++.
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~-~g--~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL-RG--KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh-cC--CeEEEE----EHHHHHHHHHH
Confidence 446666665544322 22 34588999999999999999888764 22 244444 24666666654
No 444
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=33.48 E-value=25 Score=44.82 Aligned_cols=43 Identities=28% Similarity=0.547 Sum_probs=34.0
Q ss_pred ccceEEEEeccCCCCChHHHHHHHHHhCCCCCCC--hHHHHHHhc
Q 000160 603 NSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQS--HQEFKDWFC 645 (1992)
Q Consensus 603 ~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s--~~eF~ewFs 645 (1992)
+.++..|+||||+.|.+.|++++-++|.++.+.. ...|..|-+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~was 516 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWAS 516 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHHHHhhhhhhhhHHH
Confidence 4567899999999999999999999999886533 345665553
No 445
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=33.43 E-value=43 Score=44.75 Aligned_cols=53 Identities=32% Similarity=0.535 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhhhheee--ehhh------------hhHHHHHHHHHhhhhhhhhchhhhhhHHHHHh
Q 000160 23 AVNISKDVKKFWMKIEKLVL--YKHQ------------MEVDVRKKKALDKQLEFLLGQTERYSSMLAEN 78 (1992)
Q Consensus 23 A~~iAkeV~~fw~~ieKvV~--~K~Q------------~~leekrKKALd~qL~fivgqTEkYS~~Lae~ 78 (1992)
|..|.||.--||-+-||... +|-+ .+.|+||++ +.|+||+-|||-||-.+.-.
T Consensus 405 akr~~Rem~~fwKk~er~~rd~rKK~EkEamer~KrEeEerEskRQa---rklnfLltQTELySHFi~rK 471 (1185)
T KOG0388|consen 405 AKRIYREMYGFWKKNERNMRDLRKKAEKEAMERAKREEEERESKRQA---RKLNFLLTQTELYSHFIGRK 471 (1185)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhc
Confidence 67788999999999888764 3322 222333332 56899999999999888433
No 446
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=33.05 E-value=66 Score=31.04 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=29.1
Q ss_pred CCCChhhhHHHHHHHHhc---C----CC--hhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1591 DVWLPQEDAILCAVVHEY---G----PN--WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1591 ~~w~~~ed~~l~~~v~~~---g----~n--w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
.+.|.+||++|+.+|-++ | +| |.-..+.- -..++-.+=|+||...+.
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~----------~t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKH----------PTRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-----------SSS--SHHHHHHHHHHT-
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHh
Confidence 578999999999999554 2 35 88777732 124667778999976654
No 447
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=32.87 E-value=2.2e+02 Score=44.04 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcHHHHHHHHHHHCCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVMLNWETEFLKWCPAF 530 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg-~~GP~LIVVPtSLL~NWe~EfkKw~P~l 530 (1992)
...|-+-|+.++..+++- ...-.+|---.|.|||.+..+++..+..... ....++.++|++-.-+ +|+. . ++
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~---~L~~-~-g~ 1089 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVG---ELKS-A-GV 1089 (1960)
T ss_pred cCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHH---HHHh-c-CC
Confidence 357999999999887652 2233455667999999888655443322111 1124666789854432 3322 1 21
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc--ccceEE
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF--NSKRRI 608 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L--~a~rRL 608 (1992)
...+++ .|.. .+........ ...-.+||||||=.+.+.. ...|+.+ .+..||
T Consensus 1090 ~a~Ti~-----------s~l~---------~~~~~~~~~~---~~~~~v~ivDEasMv~~~~---~~~l~~~~~~~~ak~ 1143 (1960)
T TIGR02760 1090 QAQTLD-----------SFLT---------DISLYRNSGG---DFRNTLFILDESSMVSNFQ---LTHATELVQKSGSRA 1143 (1960)
T ss_pred chHhHH-----------HHhc---------CcccccccCC---CCcccEEEEEccccccHHH---HHHHHHhccCCCCEE
Confidence 111100 0000 0000000000 1235799999999986533 3333332 456799
Q ss_pred EEeccCCC
Q 000160 609 LLTGTPLQ 616 (1992)
Q Consensus 609 LLTGTPLQ 616 (1992)
+|.|=|-|
T Consensus 1144 vlvGD~~Q 1151 (1960)
T TIGR02760 1144 VSLGDIAQ 1151 (1960)
T ss_pred EEeCChhh
Confidence 99998766
No 448
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=32.54 E-value=1.8e+02 Score=44.16 Aligned_cols=140 Identities=16% Similarity=0.070 Sum_probs=75.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHh-cCCCCcEEEEecCCcHHHHHHHHHHH
Q 000160 448 PFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACE-KGIWGPHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 448 P~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~e-kg~~GP~LIVVPtSLL~NWe~EfkKw 526 (1992)
+..+...|-+-|+.++..+++ ....-.||---.|.|||.+.-+++..+... ......++.++|+.-.-. ++..
T Consensus 961 ~~~~~~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk---~L~e- 1034 (1747)
T PRK13709 961 PGELMEGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG---EMRS- 1034 (1747)
T ss_pred HHHhcCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH---HHHh-
Confidence 334456799999999998775 223345677779999998876666554321 111224667789875443 2222
Q ss_pred CCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcc-cc
Q 000160 527 CPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFN-SK 605 (1992)
Q Consensus 527 ~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~-a~ 605 (1992)
. ++...+++. . ..+. ...... .......-++||||||-++-+.. ....+..+. ..
T Consensus 1035 ~-Gi~A~TI~s------~--L~~~------------~~~~~~-~~~~~~~~~llIVDEaSMv~~~~--m~~Ll~~~~~~g 1090 (1747)
T PRK13709 1035 A-GVDAQTLAS------F--LHDT------------QLQQRS-GETPDFSNTLFLLDESSMVGNTD--MARAYALIAAGG 1090 (1747)
T ss_pred c-CcchhhHHH------H--hccc------------cccccc-ccCCCCCCcEEEEEccccccHHH--HHHHHHhhhcCC
Confidence 1 221111100 0 0000 000000 00011234899999999996543 333333333 35
Q ss_pred eEEEEeccCCCC
Q 000160 606 RRILLTGTPLQN 617 (1992)
Q Consensus 606 rRLLLTGTPLQN 617 (1992)
.|++|.|=+-|-
T Consensus 1091 arvVLVGD~~QL 1102 (1747)
T PRK13709 1091 GRAVSSGDTDQL 1102 (1747)
T ss_pred CEEEEecchHhc
Confidence 789999987773
No 449
>PTZ00062 glutaredoxin; Provisional
Probab=31.99 E-value=2.3e+02 Score=33.32 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhCCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 1000 ELAILLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 1000 ~L~~LL~kLks~G~KVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
.+...|+++.. .++|+||+. +-.....+..+|+.+|+.|..+|=....+-|+.+.+.-+...=..|||=.--.
T Consensus 101 ~~~~~v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~I 179 (204)
T PTZ00062 101 DTVEKIERLIR-NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELI 179 (204)
T ss_pred HHHHHHHHHHh-cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 35555555544 589999988 45677888999999999999998877767777665533322234455544444
Q ss_pred cc
Q 000160 1074 GG 1075 (1992)
Q Consensus 1074 GG 1075 (1992)
||
T Consensus 180 GG 181 (204)
T PTZ00062 180 GG 181 (204)
T ss_pred cC
Confidence 44
No 450
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=31.47 E-value=58 Score=41.68 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=26.1
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN 518 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N 518 (1992)
..|.+|.-+.|.|||..+-++...+. .+++.|....++..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~~~l~~~ 204 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSELVQK 204 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC------CCEEEeehHHHhHh
Confidence 45678999999999988877654431 24555554444433
No 451
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=31.47 E-value=1.4e+02 Score=41.60 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=20.3
Q ss_pred cCccEEEEcCCCChHHHHHHHHHHHH
Q 000160 472 KRLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 472 ~~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
...|-||--+.|.|||..+-++....
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999877665433
No 452
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=31.19 E-value=3.3e+02 Score=35.61 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=19.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ 499 (1992)
+-+|.-..|+|||..+-++..++..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 3578999999999988777766543
No 453
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=30.85 E-value=8.7e+02 Score=31.63 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=44.4
Q ss_pred EEEeehhhhhchhhhhccCccEEEEcCcc-ccCCh-hhHHHHHHHhc--ccceEEEEeccCCCCChHHHHHHHHHhCCC
Q 000160 558 CITTYRLIIQDSKVFKRKKWKYLILDEAH-LIKNW-KSQRWQTLLNF--NSKRRILLTGTPLQNDLMELWSLMHFLMPH 632 (1992)
Q Consensus 558 VITSYe~l~qD~~~f~r~~W~~LILDEAH-~IKN~-~Sq~~qaLl~L--~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~ 632 (1992)
++.+.+-+......|... ++|.+|=+= .-++. ......++... ....-|.|++|-=.+.+++++.-+.++...
T Consensus 265 vv~~~~el~~ai~~l~~~--d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 265 VVYSPKELAEAIEALRDC--DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred EecCHHHHHHHHHHhhcC--CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcc
Confidence 344444454444555544 888888653 33332 12223333333 445778999998888899999888877554
No 454
>PRK08760 replicative DNA helicase; Provisional
Probab=30.83 E-value=2.3e+02 Score=37.52 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=42.5
Q ss_pred HHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000160 463 LDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 463 L~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw 526 (1992)
|+-|..-+..+-=.|||--.|.|||.-++.++.+.+...| .|++++..---..+|..-+.-.
T Consensus 219 LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 219 FDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccCCHHHHHHHHHHh
Confidence 3444332333333588999999999999998887765433 3788888777777777765443
No 455
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.32 E-value=41 Score=45.82 Aligned_cols=6 Identities=67% Similarity=1.215 Sum_probs=2.6
Q ss_pred cCCccc
Q 000160 287 EDGDFV 292 (1992)
Q Consensus 287 eD~df~ 292 (1992)
.|+||.
T Consensus 1467 ~D~df~ 1472 (1516)
T KOG1832|consen 1467 IDGDFM 1472 (1516)
T ss_pred CChHHH
Confidence 344444
No 456
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=29.51 E-value=1e+02 Score=37.31 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000160 457 EYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 511 (1992)
Q Consensus 457 pYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV 511 (1992)
++...-+..+......+.+.+|-.+.|.|||..+-++...+ | .|++.|+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g--~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----D--RPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----C--CCEEEEe
Confidence 45555566666666677888999999999999887765422 2 4666664
No 457
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=29.35 E-value=1.4e+02 Score=42.03 Aligned_cols=144 Identities=18% Similarity=0.181 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe--cC--C--cHHHHHHHHHHHCC
Q 000160 455 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV--PT--S--VMLNWETEFLKWCP 528 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV--Pt--S--LL~NWe~EfkKw~P 528 (1992)
-..++..-++- +.++...|+.-|+|.|||.|+--+|...+...| ++.=||| |- + -+.+|...=.-+.+
T Consensus 174 a~~~r~~Il~~----i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 174 AYKMRDTILDA----IEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred cHHHHHHHHHH----HHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 45556555554 345778899999999999999999998776666 3333555 43 1 24444332112333
Q ss_pred CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhh-hccCccEEEEcCccccCChhhHHH----HHHHhcc
Q 000160 529 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVF-KRKKWKYLILDEAHLIKNWKSQRW----QTLLNFN 603 (1992)
Q Consensus 529 ~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f-~r~~W~~LILDEAH~IKN~~Sq~~----qaLl~L~ 603 (1992)
+ ..+-|.-.-..+ ....-.+..+|+..+.+....- .......||+||.|- +...+-.. +.++..+
T Consensus 248 g-~~VGYqvrl~~~--------~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHE-R~i~~DflLi~lk~lL~~~ 317 (924)
T KOG0920|consen 248 G-EEVGYQVRLESK--------RSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHE-RSINTDFLLILLKDLLPRN 317 (924)
T ss_pred C-CeeeEEEeeecc--------cCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEE-ccCCcccHHHHHHHHhhhC
Confidence 3 333332111000 1112347778888887654331 123578999999994 33333322 2233334
Q ss_pred cc-eEEEEeccC
Q 000160 604 SK-RRILLTGTP 614 (1992)
Q Consensus 604 a~-rRLLLTGTP 614 (1992)
.. +.+|||||-
T Consensus 318 p~LkvILMSAT~ 329 (924)
T KOG0920|consen 318 PDLKVILMSATL 329 (924)
T ss_pred CCceEEEeeeec
Confidence 33 678999993
No 458
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=29.34 E-value=46 Score=46.58 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=75.1
Q ss_pred HHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcH----HHHHHHHHHHCCCCeEEEEeCchhHH
Q 000160 468 TMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVM----LNWETEFLKWCPAFKILTYFGSAKER 542 (1992)
Q Consensus 468 slye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL----~NWe~EfkKw~P~lKVL~Y~Gs~keR 542 (1992)
.+|....+..|.+-.|.|||+.+-..+.+.....+- +.+.+|+|. .++ ..|..-+. .|++|+.-..|.....
T Consensus 938 ~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd 1014 (1230)
T KOG0952|consen 938 CLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD 1014 (1230)
T ss_pred EEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC
Confidence 345556788999999999999886655555444443 788999996 343 34765443 3688888887765433
Q ss_pred HHhhhccCCCCCceEEEEeehhhhhchhhhhcc----CccEEEEcCccccCC
Q 000160 543 KFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRK----KWKYLILDEAHLIKN 590 (1992)
Q Consensus 543 k~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~----~W~~LILDEAH~IKN 590 (1992)
-.. -...+++|||......-....... ....+|+||.|.++.
T Consensus 1015 ~~~------v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1015 VKA------VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred hhh------eecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 111 124579999998875543322222 346799999998764
No 459
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.24 E-value=1.1e+02 Score=39.03 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=45.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCce
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 556 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fd 556 (1992)
.++-=-|.|||-++--|..|+ ..+ .|++.||.+-+- -.---..++.|.-..+|- |||+..+-+.
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~-kkk-G~K~~LvcaDTF-RagAfDQLkqnA~k~~iP-~ygsyte~dp------------ 168 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYY-KKK-GYKVALVCADTF-RAGAFDQLKQNATKARVP-FYGSYTEADP------------ 168 (483)
T ss_pred EEEeccCCCcceeHHHHHHHH-Hhc-CCceeEEeeccc-ccchHHHHHHHhHhhCCe-eEecccccch------------
Confidence 345568999997665554444 433 456656554331 111222334443333332 3343222110
Q ss_pred EEEEeehhhhhchhhhhccCccEEEEcCccccCCh
Q 000160 557 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNW 591 (1992)
Q Consensus 557 VVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~ 591 (1992)
..........|++-+|++||+|=+-+.+-.
T Consensus 169 -----v~ia~egv~~fKke~fdvIIvDTSGRh~qe 198 (483)
T KOG0780|consen 169 -----VKIASEGVDRFKKENFDVIIVDTSGRHKQE 198 (483)
T ss_pred -----HHHHHHHHHHHHhcCCcEEEEeCCCchhhh
Confidence 012223344566667777777766555443
No 460
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.22 E-value=57 Score=36.67 Aligned_cols=52 Identities=23% Similarity=0.423 Sum_probs=41.9
Q ss_pred CCCCChhhhHHHHHHHHhc---CC----ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhC
Q 000160 1590 PDVWLPQEDAILCAVVHEY---GP----NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSV 1653 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~---g~----nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~ 1653 (1992)
.+.||.+||-+|..+|=-| |+ -.+-|++.| -|++--|.-||-..|-+--.++
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L------------~RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL------------NRTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH------------cccHHHhcchHHHHHHHHHHHH
Confidence 5789999999999988665 54 288888988 2999999999999887654444
No 461
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.16 E-value=2.9e+02 Score=36.10 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 511 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV 511 (1992)
-+++--.|.|||.++.-|..++....|. ++++|.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~--kV~lV~ 135 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGK--KVLLVA 135 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCC--eEEEEe
Confidence 4778899999999988888776533332 455554
No 462
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=28.87 E-value=4.1e+02 Score=33.34 Aligned_cols=51 Identities=22% Similarity=0.120 Sum_probs=30.4
Q ss_pred hccCccEEEEcCccccCChhhHH---HHHHH---h----cccceEEEEeccCCCCChHHHH
Q 000160 573 KRKKWKYLILDEAHLIKNWKSQR---WQTLL---N----FNSKRRILLTGTPLQNDLMELW 623 (1992)
Q Consensus 573 ~r~~W~~LILDEAH~IKN~~Sq~---~qaLl---~----L~a~rRLLLTGTPLQNsL~ELw 623 (1992)
....+++||+|=+-+.-+..... .+... . ......+.|.+|--+|.+....
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~ 253 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK 253 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHH
Confidence 34678999999998876544321 11111 1 1223458899996666666543
No 463
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=28.36 E-value=3.2e+02 Score=30.14 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=56.4
Q ss_pred eEEEEeCchHHHHHHHHHHHHcCCc--EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecC
Q 000160 1014 RALIFTQMTKMLDILEEFISLYGYT--YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1091 (1992)
Q Consensus 1014 KVLIFSQ~t~mLDILe~~L~~~Gi~--y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~ 1091 (1992)
.|=|+||.-.+...|-..+..+|+. ++.=.|+...-.-.++++-|..|+.++++++- ++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 4678999999999999999887665 45556665555677899999999999887654 444
Q ss_pred CCChhhHHHHHHhhcccCCcCcEEEEEE
Q 000160 1092 DWNPAMDQQAQDRCHRIGQTREVHIYRL 1119 (1992)
Q Consensus 1092 dWNPa~d~QA~gRahRIGQTRdV~VYRL 1119 (1992)
.=||....++.-|+.|- |||.+|+-
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE-
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeC
Confidence 45788888888888764 99999764
No 464
>CHL00176 ftsH cell division protein; Validated
Probab=28.35 E-value=1.7e+02 Score=40.18 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.6
Q ss_pred CccEEEEcCCCChHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLA 495 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa 495 (1992)
..|.+|.-+.|.|||..+=++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999988877643
No 465
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=28.06 E-value=1.9e+02 Score=31.66 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHc----CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 998 LQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLY----GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 998 Lq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~----Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...+..|+.+....|+||+|+++-...+..|-..|=.. -+.+.+...... ....|+ |++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~--------------~~~PV~-i~~~~ 79 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPA--------------ARQPVL-ITWDQ 79 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SST--------------T--SEE-EE-TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCC--------------CCCeEE-EecCc
Confidence 58899999999999999999999999999999999322 234444333322 122354 44322
Q ss_pred cccccCCccCCEEEEecCCC
Q 000160 1074 GGVGINLVGADTVIFYDSDW 1093 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dW 1093 (1992)
. +-....++.+|++++.+
T Consensus 80 ~--~~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 80 E--ANPNNHADVLINLSGEV 97 (137)
T ss_dssp S------S--SEEEE--SS-
T ss_pred c--cCCCCCCCEEEECCCCC
Confidence 1 12344599999999887
No 466
>PHA00012 I assembly protein
Probab=28.00 E-value=1.7e+02 Score=36.92 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=16.5
Q ss_pred EEcCCCChHHHHHHHHHHHHHH
Q 000160 478 LADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 478 LADEMGLGKTIQtIALLa~La~ 499 (1992)
+.--+|.|||+.+++-|.....
T Consensus 6 ITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 6 VTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EecCCCCCchHHHHHHHHHHHH
Confidence 3445899999999987766443
No 467
>PRK06620 hypothetical protein; Validated
Probab=27.61 E-value=1.7e+02 Score=34.47 Aligned_cols=96 Identities=17% Similarity=0.284 Sum_probs=47.7
Q ss_pred EEEecC-CcHHHHHHHHHH-HC--CCCeEEEEeCchhHHH-HhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEE
Q 000160 508 LIVVPT-SVMLNWETEFLK-WC--PAFKILTYFGSAKERK-FKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLIL 582 (1992)
Q Consensus 508 LIVVPt-SLL~NWe~EfkK-w~--P~lKVL~Y~Gs~keRk-~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LIL 582 (1992)
+||.|. ....+|..++.+ |. |....+.++|....-| ..-+.|.... ...+++...... ..+. .-++|+|
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~~~~~~~--~~~~--~~d~lli 91 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS--NAYIIKDIFFNE--EILE--KYNAFII 91 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc--CCEEcchhhhch--hHHh--cCCEEEE
Confidence 788884 456666666654 53 2123455555433222 1222232211 223333222211 1222 3478999
Q ss_pred cCccccCChhhHHHHHHHhc-----ccceEEEEeccCC
Q 000160 583 DEAHLIKNWKSQRWQTLLNF-----NSKRRILLTGTPL 615 (1992)
Q Consensus 583 DEAH~IKN~~Sq~~qaLl~L-----~a~rRLLLTGTPL 615 (1992)
||+|.+.. ..++.+ ...+.+++|||--
T Consensus 92 Ddi~~~~~------~~lf~l~N~~~e~g~~ilits~~~ 123 (214)
T PRK06620 92 EDIENWQE------PALLHIFNIINEKQKYLLLTSSDK 123 (214)
T ss_pred eccccchH------HHHHHHHHHHHhcCCEEEEEcCCC
Confidence 99996521 234444 5567899999843
No 468
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.31 E-value=1.6e+02 Score=40.72 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=66.2
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHH-HHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000160 993 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFI-SLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1071 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L-~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLST 1071 (1992)
..|||..+...++.+....|..|||-..-.....-+...| ...|.+...++.+.+..+|...-.+... +.++|+ +.|
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~-G~~~vV-IGt 303 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARR-GEARVV-IGT 303 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhc-CCceEE-EEe
Confidence 4799999999999999999999999988877776555555 5568999999999999999988888864 778774 555
Q ss_pred ccc
Q 000160 1072 RSG 1074 (1992)
Q Consensus 1072 rAG 1074 (1992)
|++
T Consensus 304 RSA 306 (730)
T COG1198 304 RSA 306 (730)
T ss_pred chh
Confidence 664
No 469
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=27.29 E-value=49 Score=32.82 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=45.6
Q ss_pred hhHHHHHHHHh-cCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCC
Q 000160 1597 EDAILCAVVHE-YGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNS 1657 (1992)
Q Consensus 1597 ed~~l~~~v~~-~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~ 1657 (1992)
-++.|+.++.. .|.+|..++..| |++..-...-...+|..+.++=..++..|....+.++
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~L-g~~~~~i~~i~~~~~~~~~~~~~~lL~~W~~~~g~~a 64 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKL-GLSEADIDQIRTEAPRDLAEQSVQLLRLWEQREGKNA 64 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHccchhh
Confidence 45788899988 999999999999 5654443333445566788999999999998877653
No 470
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=27.25 E-value=1e+02 Score=42.73 Aligned_cols=68 Identities=16% Similarity=0.017 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcH-HHHHHHHHHHC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVM-LNWETEFLKWC 527 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~-~GP~LIVVPtSLL-~NWe~EfkKw~ 527 (1992)
.|-+-|+.+|.+ . ....++---.|.|||.+.+.-+++|....+. ...+|+|+.|.-. ..-..-+.+.+
T Consensus 4 ~Ln~~Q~~av~~-----~-~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAA-----P-PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcC-----C-CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 488999999863 1 2344555569999999999999999875553 3457888887533 33334444443
No 471
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=26.80 E-value=1.4e+02 Score=38.50 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=22.4
Q ss_pred HHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHH
Q 000160 462 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 462 GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La 498 (1992)
.+++|.-.-.-.+++|+|+ .|.|||..+-.+.....
T Consensus 159 vID~l~PIGkGQR~lIvgp-pGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAP-PKAGKTVLLQNIANSIT 194 (416)
T ss_pred eeeeecccccCceEEEeCC-CCCChhHHHHHHHHHHH
Confidence 4455555444455667766 99999976655444443
No 472
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=49 Score=41.70 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=29.2
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 525 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkK 525 (1992)
....|-+|-...|.|||..+-|+.... | +++.=|-=.+++..|--|-.|
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----g--a~fInv~~s~lt~KWfgE~eK 173 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----G--ANFINVSVSNLTSKWFGEAQK 173 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----C--CCcceeeccccchhhHHHHHH
Confidence 356677889999999998876654322 2 133333334455566544443
No 473
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=26.39 E-value=85 Score=40.42 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=26.6
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW 519 (1992)
+.|.+|.-..|.|||..+=++...+ ..+++.|.+..++..|
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKY 219 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHh
Confidence 5577899999999998876654432 2355656554444333
No 474
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=26.38 E-value=1e+02 Score=40.94 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=20.9
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La 498 (1992)
..|.+|.-.+|.|||..+-++...+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 45678899999999998877776653
No 475
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.33 E-value=2e+02 Score=36.34 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHccC---ccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 459 QHIGLDWLVTMYEKR---LNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 459 Q~~GL~WLvslye~~---lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
|...+.-+.+....+ .+-+|.-+.|.|||..+-++..++.|
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 333444444444433 24578999999999888888666655
No 476
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=26.33 E-value=1.6e+02 Score=37.63 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHHHH-HHc--cCccEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 453 FPLREYQHIGLDWLVT-MYE--KRLNGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvs-lye--~~lgGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
.+-|+-|..-+.-.+. .+. ...|.++.--.|.|||.++--++-.+....
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 4458888888875443 222 234788999999999999988877776543
No 477
>PRK04328 hypothetical protein; Provisional
Probab=26.15 E-value=2.6e+02 Score=33.51 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=30.0
Q ss_pred HHHHHHHH-HccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000160 462 GLDWLVTM-YEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 511 (1992)
Q Consensus 462 GL~WLvsl-ye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV 511 (1992)
||+-|+.- +..+..-+++-+.|.|||+.++-++...+ ..| .+.|+|.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~-~~g--e~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMG--EPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcC--CcEEEEE
Confidence 45554431 22233346799999999999999887753 334 3667765
No 478
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=25.64 E-value=2.1e+02 Score=32.02 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=38.6
Q ss_pred eEEEEeCc-------hHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc
Q 000160 1014 RALIFTQM-------TKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT 1060 (1992)
Q Consensus 1014 KVLIFSQ~-------t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~ 1060 (1992)
||+|||.. -..-..+..+|+.+++.|..+|=++..+-|+++.+....
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~ 54 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGA 54 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC
Confidence 57888876 345677889999999999999999998889988877643
No 479
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.22 E-value=2.8e+02 Score=35.95 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=61.6
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCce
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 556 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fd 556 (1992)
+++-|.|.||+-.-+-+.+.++. .+++|.|.=---+.||..-.+|.-- +..+
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~----~~~vLYVsGEES~~QiklRA~RL~~------------------------~~~~ 148 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAK----RGKVLYVSGEESLQQIKLRADRLGL------------------------PTNN 148 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHh----cCcEEEEeCCcCHHHHHHHHHHhCC------------------------Cccc
Confidence 67899999999655555555554 2489999988888999888777520 1234
Q ss_pred EEEEeehhhhhchhhhhccCccEEEEcCccccCC
Q 000160 557 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN 590 (1992)
Q Consensus 557 VVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN 590 (1992)
+.+..+..+..-...+...+.++||+|=.|.+-+
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 5566665555556667778999999998887643
No 480
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=25.17 E-value=4.1e+02 Score=34.49 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=31.5
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN 518 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N 518 (1992)
+.-.+|+--.|.|||.-++.++.+.+...| .++|++..---..+
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlEm~~~~ 238 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLEMSAEQ 238 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCcCCHHH
Confidence 333588999999999999999888765433 37888875443333
No 481
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=25.15 E-value=2.9e+02 Score=39.70 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHHHHHcc----CccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 454 PLREYQHIGLDWLVTMYEK----RLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~----~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
.=+-+|-.+++-+..+-++ +.-|+=--.+|.|||+.=.-++..|+.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd 457 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRD 457 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCC
Confidence 3467899999877765433 334555667999999988777666654
No 482
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=24.90 E-value=1e+02 Score=42.84 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=25.7
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW 519 (1992)
..|.+|.-..|.|||..+=++...+ + .+++.|-++.++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~----~--~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES----G--ANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc----C--CCEEEEehHHHhhcc
Confidence 3456788999999998776654432 2 255555555444433
No 483
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=24.58 E-value=1e+02 Score=42.49 Aligned_cols=58 Identities=21% Similarity=0.131 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcHH
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVML 517 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~-~GP~LIVVPtSLL~ 517 (1992)
.|-+-|+.++.+- ....++.--.|.|||.+.++-+++|....|. ...+|+|+.|.-..
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA 60 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 60 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHH
Confidence 3778899988651 2333444459999999999999999875554 34578888875433
No 484
>PRK10867 signal recognition particle protein; Provisional
Probab=24.29 E-value=2e+02 Score=37.60 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeC----chhHHHHhhhccCCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFG----SAKERKFKRQGWLKP 552 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~G----s~keRk~kr~gw~k~ 552 (1992)
+++--.|.|||.++.-|..++....|. ++++|.=..--.-=...++.|+....+-+|.. ....-......+.+.
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G~--kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~ 181 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKKK--KVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE 181 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCC--cEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh
Q ss_pred CCceEEEE
Q 000160 553 NSFHVCIT 560 (1992)
Q Consensus 553 ~~fdVVIT 560 (1992)
..|++||.
T Consensus 182 ~~~DvVII 189 (433)
T PRK10867 182 NGYDVVIV 189 (433)
T ss_pred cCCCEEEE
No 485
>PRK05973 replicative DNA helicase; Provisional
Probab=24.22 E-value=1e+02 Score=36.93 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=28.2
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 511 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV 511 (1992)
..+.-.+|+-..|.|||+.++-++.+.+. .| .+++++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~G--e~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMK-SG--RTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cC--CeEEEEE
Confidence 33444588999999999999998887654 33 4677776
No 486
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=24.19 E-value=1.9e+02 Score=32.57 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=36.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcC-------CCCcEEEEecCCcHHHHHHHHHHHC
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLACEKG-------IWGPHLIVVPTSVMLNWETEFLKWC 527 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ekg-------~~GP~LIVVPtSLL~NWe~EfkKw~ 527 (1992)
=++++-..|.|||..++.++++++.... ..+++|+|..-.-..++..-+..+.
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 3678888999999999999999886332 3357888877766666666666654
No 487
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=24.11 E-value=1.1e+02 Score=33.54 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=21.9
Q ss_pred HHHHHccCccEEEEcCCCChHHHHHHHHHHHH
Q 000160 466 LVTMYEKRLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 466 Lvslye~~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
+......+.-.+|.-++|.|||.-+=+++..+
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444456788899999998776666655
No 488
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=24.02 E-value=5e+02 Score=28.39 Aligned_cols=103 Identities=17% Similarity=0.312 Sum_probs=56.2
Q ss_pred HHHHHHHHH----cCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEecccc-----ccccCCccCCEEEEecCC--C
Q 000160 1026 DILEEFISL----YGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSG-----GVGINLVGADTVIFYDSD--W 1093 (1992)
Q Consensus 1026 DILe~~L~~----~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAG-----G~GLNLT~AdtVIfyD~d--W 1093 (1992)
+.|...++. ..+..+.+|.+.+... ..+++.+.. .+.+.++......| ..|+.....+.|+|+|.| |
T Consensus 14 ~~l~sl~~~~~~~~~~eiivvd~~s~d~~-~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~ 92 (185)
T cd04179 14 ELVERLLAVLEEGYDYEIIVVDDGSTDGT-AEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDADLQH 92 (185)
T ss_pred HHHHHHHHHhccCCCEEEEEEcCCCCCCh-HHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 444444444 3566777776655433 444444433 44554444443333 245666667999999876 7
Q ss_pred ChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHH
Q 000160 1094 NPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENIL 1130 (1992)
Q Consensus 1094 NPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIl 1130 (1992)
.|....+....+.+-+ ..-|...+....++....++
T Consensus 93 ~~~~l~~l~~~~~~~~-~~~v~g~~~~~~~~~~~~~~ 128 (185)
T cd04179 93 PPEDIPKLLEKLLEGG-ADVVIGSRFVRGGGAGMPLL 128 (185)
T ss_pred CHHHHHHHHHHHhccC-CcEEEEEeecCCCcccchHH
Confidence 7766666665444422 23355566665554333333
No 489
>PF12622 NpwBP: mRNA biogenesis factor
Probab=23.80 E-value=35 Score=31.00 Aligned_cols=11 Identities=45% Similarity=1.005 Sum_probs=8.7
Q ss_pred EEEecCCCChh
Q 000160 1086 VIFYDSDWNPA 1096 (1992)
Q Consensus 1086 VIfyD~dWNPa 1096 (1992)
=||||+.|||.
T Consensus 4 SiyydP~~NP~ 14 (48)
T PF12622_consen 4 SIYYDPELNPL 14 (48)
T ss_pred ceecCCccCCC
Confidence 37888888884
No 490
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=23.73 E-value=2.2e+02 Score=35.67 Aligned_cols=51 Identities=29% Similarity=0.352 Sum_probs=33.1
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhc---C----CCCcEEEEe----cCCcHHHHHH
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEK---G----IWGPHLIVV----PTSVMLNWET 521 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ek---g----~~GP~LIVV----PtSLL~NWe~ 521 (1992)
.++.+.||+-+-|+|||...|-+..+++.-+ | ..|.+|+|. |.+++..-+.
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~ 148 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEP 148 (402)
T ss_pred hcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHH
Confidence 3467789988999999998777666655432 2 236677764 4455544433
No 491
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=23.70 E-value=2.6e+02 Score=36.17 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000160 463 LDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 463 L~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW 519 (1992)
|+-+..-+..+.-.|||-..|.|||.-++.++.+.+...| .|+|++..-.-..++
T Consensus 184 LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 184 LDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEMSAEQL 238 (421)
T ss_pred HHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHHHH
Confidence 4444433333444589999999999999999888764433 478888744333333
No 492
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=23.50 E-value=43 Score=41.83 Aligned_cols=43 Identities=28% Similarity=0.256 Sum_probs=29.8
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCCChH
Q 000160 576 KWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLM 620 (1992)
Q Consensus 576 ~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ 620 (1992)
.=-+|||||||| ..-.|.-..|-.|--.-+..+||.+.|-+|-
T Consensus 243 ~dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDLp 285 (348)
T COG1702 243 NDAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDLP 285 (348)
T ss_pred CCeEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccCC
Confidence 346899999997 2233333344556667789999999986643
No 493
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=23.31 E-value=1e+02 Score=38.48 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=19.9
Q ss_pred HHHhhhcCCCCCHHHHHHhhhccc
Q 000160 322 EIALLQKESEIPVEELLARYRKDM 345 (1992)
Q Consensus 322 El~~L~~e~empleeLla~Y~~~~ 345 (1992)
++++|..|+.|||.+||+||.|+.
T Consensus 134 d~a~l~EEa~~pl~ElL~rY~G~~ 157 (542)
T KOG0699|consen 134 DRADLIEEASVPLAELLKRYGGAG 157 (542)
T ss_pred HHHHHHHhccCcHHHHHHHhcCCC
Confidence 345677889999999999998863
No 494
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=23.22 E-value=5.6e+02 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=23.8
Q ss_pred CccEEEEcCccccCChhh---HHHHHHHhc-ccceEEEEec
Q 000160 576 KWKYLILDEAHLIKNWKS---QRWQTLLNF-NSKRRILLTG 612 (1992)
Q Consensus 576 ~W~~LILDEAH~IKN~~S---q~~qaLl~L-~a~rRLLLTG 612 (1992)
..++||||..|.+.+... ..+..+-.+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 579999999999987532 122222222 3456777777
No 495
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.82 E-value=4.1e+02 Score=34.90 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=56.8
Q ss_pred ccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000160 992 QFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1071 (1992)
Q Consensus 992 q~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLST 1071 (1992)
...+||- |.-+|.-+.. +..+||.+.....+.-....|...|+....+.|..+..++..++.... ++.+.+++++.
T Consensus 34 pTGsGKT--l~y~lp~l~~-~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~-~~~~~il~~TP 109 (470)
T TIGR00614 34 PTGGGKS--LCYQLPALCS-DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLK-DGKIKLLYVTP 109 (470)
T ss_pred CCCCcHh--HHHHHHHHHc-CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh-cCCCCEEEECH
Confidence 3468885 3333333333 457899999887766666677888999999999999888888888874 46677777776
Q ss_pred cc
Q 000160 1072 RS 1073 (1992)
Q Consensus 1072 rA 1073 (1992)
..
T Consensus 110 e~ 111 (470)
T TIGR00614 110 EK 111 (470)
T ss_pred HH
Confidence 54
No 496
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=22.61 E-value=2.2e+02 Score=35.90 Aligned_cols=93 Identities=24% Similarity=0.399 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecC--CCCH------HHHHHHHHHHhc--CCCceE
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDG--STQP------EERQTLMQRFNT--NPKIFL 1066 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDG--sts~------eqRq~lIerFN~--D~~ifV 1066 (1992)
=+.....++++|...||.|+|.+.- .+.+...|+..|+.|..+-+ .+.. -.|+..+-++-. ++++.+
T Consensus 12 hvhfFk~~I~eL~~~GheV~it~R~---~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~i 88 (335)
T PF04007_consen 12 HVHFFKNIIRELEKRGHEVLITARD---KDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAI 88 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEec---cchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 4556778889999999999999864 36777888899999998844 2222 234443333333 345433
Q ss_pred EEEeccccccccCCccCCEEEEecCCC
Q 000160 1067 FILSTRSGGVGINLVGADTVIFYDSDW 1093 (1992)
Q Consensus 1067 fLLSTrAGG~GLNLT~AdtVIfyD~dW 1093 (1992)
-..|..+.-++ =+.+.-.|+|+|.++
T Consensus 89 s~~s~~a~~va-~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 89 SFGSPEAARVA-FGLGIPSIVFNDTEH 114 (335)
T ss_pred ecCcHHHHHHH-HHhCCCeEEEecCch
Confidence 22332222111 234567889999654
No 497
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=22.45 E-value=85 Score=35.74 Aligned_cols=45 Identities=27% Similarity=0.478 Sum_probs=35.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCC-------hhHHHHHhhccccCccccccccCchhhHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPN-------WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1646 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~n-------w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1646 (1992)
.+.|+.++|-+|..+|-+||-+ ...|++.| -|++-.|..||-..|
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L------------~rt~aac~fRwNs~v 56 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL------------KRTAAACGFRWNSVV 56 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------------hhhHHHHHhHHHHHH
Confidence 5789999999999999999852 66677776 278889999994433
No 498
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.21 E-value=7.1e+02 Score=30.61 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=61.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC----CcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccC
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT----SVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWL 550 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt----SLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~ 550 (1992)
.-.|.-..|.|||.....+...+.. .+ ..+.+|.-. ..+.||.. |+..+.
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~-~~--~~v~~i~~D~~ri~~~~ql~~----~~~~~~------------------- 130 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHG-KK--KTVGFITTDHSRIGTVQQLQD----YVKTIG------------------- 130 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-cC--CeEEEEecCCCCHHHHHHHHH----HhhhcC-------------------
Confidence 3466777999999877666655532 22 345555432 24555653 332111
Q ss_pred CCCCceEEE-Eeehhhhhchhhhhc-cCccEEEEcCccccCChhhHH--HHHHHh-cccc-eEEEEeccCCCCChHHHHH
Q 000160 551 KPNSFHVCI-TTYRLIIQDSKVFKR-KKWKYLILDEAHLIKNWKSQR--WQTLLN-FNSK-RRILLTGTPLQNDLMELWS 624 (1992)
Q Consensus 551 k~~~fdVVI-TSYe~l~qD~~~f~r-~~W~~LILDEAH~IKN~~Sq~--~qaLl~-L~a~-rRLLLTGTPLQNsL~ELwS 624 (1992)
+.+.. .+...+......+.+ .+.++||+|-+=+.-+..... ...++. .... .-|.|++|--.+.+.+...
T Consensus 131 ----~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~ 206 (270)
T PRK06731 131 ----FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 206 (270)
T ss_pred ----ceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHH
Confidence 11111 111122222222332 358999999986553222111 112222 2222 3456788866666666555
Q ss_pred HHHHh
Q 000160 625 LMHFL 629 (1992)
Q Consensus 625 LL~FL 629 (1992)
-++-+
T Consensus 207 ~f~~~ 211 (270)
T PRK06731 207 NFKDI 211 (270)
T ss_pred HhCCC
Confidence 44443
No 499
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=21.76 E-value=1.6e+02 Score=37.30 Aligned_cols=61 Identities=25% Similarity=0.289 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHHH--ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH
Q 000160 454 PLREYQHIGLDWLVTMY--EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML 517 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvsly--e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~ 517 (1992)
+|-+-|+..+++++... ..+.+-+|--.-|.|||...=+++.++.. ...++++++|+.+-.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHHH
Confidence 36778999999987665 34556688889999999887777776543 234788899987654
No 500
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=21.73 E-value=2e+02 Score=36.22 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEE
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLI 509 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LI 509 (1992)
.+.+.++|..-|..++. .+.|.|++-.+|.|||-..-+|+..+........-+.|
T Consensus 126 ~g~~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivti 180 (323)
T PRK13833 126 SKIMTEAQASVIRSAID---SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL 180 (323)
T ss_pred cCCCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEe
Done!