Query 000160
Match_columns 1992
No_of_seqs 590 out of 2706
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 21:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 1.8E-81 6.2E-86 836.4 38.5 473 447-1151 229-712 (800)
2 1z3i_X Similar to RAD54-like; 100.0 5.6E-79 1.9E-83 794.7 36.0 504 445-1167 46-572 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 4.5E-72 1.5E-76 707.6 36.8 460 448-1165 31-495 (500)
4 3dmq_A RNA polymerase-associat 100.0 1.3E-47 4.6E-52 518.8 36.4 430 451-1138 150-630 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 2.3E-43 7.9E-48 435.9 35.9 462 453-1141 8-493 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 4.9E-42 1.7E-46 403.0 19.7 173 994-1166 94-267 (271)
7 2fwr_A DNA repair protein RAD2 100.0 1E-37 3.5E-42 391.4 21.5 376 452-1139 91-470 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 7.8E-35 2.7E-39 370.0 33.5 146 994-1145 370-529 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 3.3E-35 1.1E-39 392.0 28.6 146 994-1145 611-770 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 2.3E-35 7.9E-40 398.8 25.1 146 994-1145 611-770 (936)
11 3tbk_A RIG-I helicase domain; 100.0 6.8E-34 2.3E-38 360.5 31.3 146 994-1145 369-528 (555)
12 3hgt_A HDA1 complex subunit 3; 100.0 1.9E-34 6.4E-39 341.3 21.1 132 994-1132 107-246 (328)
13 2ykg_A Probable ATP-dependent 100.0 2.3E-31 7.8E-36 349.1 25.5 131 994-1129 378-522 (696)
14 2oca_A DAR protein, ATP-depend 100.0 1.4E-30 4.8E-35 329.8 27.6 347 453-1130 112-465 (510)
15 4gl2_A Interferon-induced heli 100.0 5.9E-30 2E-34 335.9 29.3 145 995-1145 380-541 (699)
16 3h1t_A Type I site-specific re 100.0 5.9E-28 2E-32 311.7 27.4 162 451-625 175-352 (590)
17 1xti_A Probable ATP-dependent 99.9 1.5E-26 5.1E-31 281.1 28.7 130 996-1132 236-365 (391)
18 1s2m_A Putative ATP-dependent 99.9 3.5E-25 1.2E-29 270.5 34.0 123 996-1124 244-366 (400)
19 1hv8_A Putative ATP-dependent 99.9 1.9E-25 6.6E-30 267.9 26.4 122 997-1125 226-347 (367)
20 2j0s_A ATP-dependent RNA helic 99.9 6.7E-25 2.3E-29 269.1 28.3 122 997-1124 263-384 (410)
21 2z0m_A 337AA long hypothetical 99.9 2.5E-25 8.6E-30 264.2 23.1 117 1011-1134 219-335 (337)
22 3eiq_A Eukaryotic initiation f 99.9 7E-25 2.4E-29 268.4 23.6 122 996-1123 266-387 (414)
23 3pey_A ATP-dependent RNA helic 99.9 5.1E-24 1.8E-28 258.2 28.3 120 997-1122 230-355 (395)
24 1fuu_A Yeast initiation factor 99.9 4.5E-25 1.5E-29 268.0 14.9 109 1011-1123 258-366 (394)
25 2i4i_A ATP-dependent RNA helic 99.9 1.2E-22 4E-27 249.3 29.6 123 996-1123 261-383 (417)
26 2db3_A ATP-dependent RNA helic 99.9 1.4E-22 4.8E-27 252.5 30.4 120 996-1122 287-406 (434)
27 3fht_A ATP-dependent RNA helic 99.9 1.5E-22 5.2E-27 247.3 29.7 130 996-1132 252-387 (412)
28 3oiy_A Reverse gyrase helicase 99.9 3.1E-22 1.1E-26 246.7 26.8 115 996-1120 239-362 (414)
29 1oyw_A RECQ helicase, ATP-depe 99.9 3E-21 1E-25 246.3 25.5 116 997-1116 223-338 (523)
30 2eyq_A TRCF, transcription-rep 99.9 3.9E-21 1.3E-25 264.2 26.9 109 1011-1123 811-922 (1151)
31 3sqw_A ATP-dependent RNA helic 99.9 3.9E-20 1.3E-24 238.6 29.2 117 1010-1132 286-405 (579)
32 2v1x_A ATP-dependent DNA helic 99.8 2.9E-20 9.9E-25 240.2 25.5 105 1011-1117 266-370 (591)
33 3i5x_A ATP-dependent RNA helic 99.8 1.3E-19 4.4E-24 232.3 29.6 117 1010-1132 337-456 (563)
34 3fho_A ATP-dependent RNA helic 99.8 1.3E-21 4.6E-26 248.5 10.6 120 997-1122 344-469 (508)
35 3fmp_B ATP-dependent RNA helic 99.8 6E-21 2.1E-25 240.0 11.0 107 1012-1122 333-445 (479)
36 2xgj_A ATP-dependent RNA helic 99.8 5.2E-19 1.8E-23 240.1 30.5 144 452-614 84-233 (1010)
37 1gm5_A RECG; helicase, replica 99.8 4.6E-20 1.6E-24 243.8 14.2 156 453-617 367-529 (780)
38 3l9o_A ATP-dependent RNA helic 99.8 1.7E-17 5.7E-22 227.3 30.0 126 998-1125 426-599 (1108)
39 2p6r_A Afuhel308 helicase; pro 99.8 3.2E-18 1.1E-22 225.5 21.9 116 1009-1126 239-391 (702)
40 2va8_A SSO2462, SKI2-type heli 99.8 1.1E-17 3.7E-22 220.9 26.3 114 1009-1124 249-409 (715)
41 2zj8_A DNA helicase, putative 99.8 8.2E-18 2.8E-22 222.3 24.8 116 1010-1127 235-391 (720)
42 1rif_A DAR protein, DNA helica 99.7 3.9E-18 1.3E-22 200.4 13.1 163 453-631 112-278 (282)
43 4a4z_A Antiviral helicase SKI2 99.7 3E-16 1E-20 213.2 30.2 132 996-1132 322-501 (997)
44 4ddu_A Reverse gyrase; topoiso 99.7 3.3E-16 1.1E-20 214.5 29.6 157 454-618 78-264 (1104)
45 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 3.8E-16 1.3E-20 211.6 27.4 156 453-617 270-441 (1038)
46 2fz4_A DNA repair protein RAD2 99.7 2E-16 6.9E-21 182.0 14.8 142 451-619 90-233 (237)
47 1gku_B Reverse gyrase, TOP-RG; 99.6 3.1E-15 1E-19 204.8 23.1 132 454-598 57-197 (1054)
48 2hjv_A ATP-dependent RNA helic 99.6 1.7E-15 5.7E-20 164.2 13.4 131 994-1132 19-149 (163)
49 1t5i_A C_terminal domain of A 99.6 3.1E-15 1E-19 163.9 15.3 123 994-1122 15-137 (172)
50 2jgn_A DBX, DDX3, ATP-dependen 99.6 1.4E-15 4.8E-20 168.6 12.7 125 994-1123 29-153 (185)
51 2p6n_A ATP-dependent RNA helic 99.6 7.9E-15 2.7E-19 163.6 13.2 123 994-1123 39-161 (191)
52 1fuk_A Eukaryotic initiation f 99.6 9.4E-15 3.2E-19 158.5 12.7 124 996-1125 16-139 (165)
53 2gxq_A Heat resistant RNA depe 99.5 2.6E-14 9E-19 159.0 13.5 155 454-615 23-186 (207)
54 3b6e_A Interferon-induced heli 99.5 1.9E-14 6.4E-19 160.6 11.9 132 452-590 31-176 (216)
55 2rb4_A ATP-dependent RNA helic 99.5 5.8E-14 2E-18 153.7 15.0 123 996-1124 20-148 (175)
56 1t6n_A Probable ATP-dependent 99.5 3.8E-14 1.3E-18 159.7 13.4 161 454-621 36-206 (220)
57 3eaq_A Heat resistant RNA depe 99.5 1.3E-13 4.3E-18 156.1 17.3 125 993-1123 14-138 (212)
58 2v6i_A RNA helicase; membrane, 99.5 1.2E-13 4.1E-18 172.3 18.3 99 1012-1117 171-287 (431)
59 2yjt_D ATP-dependent RNA helic 99.2 2.4E-15 8.1E-20 164.1 0.0 123 995-1123 15-137 (170)
60 2oxc_A Probable ATP-dependent 99.5 1.9E-13 6.6E-18 155.7 14.9 154 454-615 46-209 (230)
61 1q0u_A Bstdead; DEAD protein, 99.5 1.9E-13 6.4E-18 154.3 14.5 160 454-621 26-197 (219)
62 1vec_A ATP-dependent RNA helic 99.5 3.7E-13 1.3E-17 149.8 16.3 155 454-615 25-188 (206)
63 2pl3_A Probable ATP-dependent 99.5 2.3E-13 8E-18 155.1 14.3 154 454-615 47-213 (236)
64 1yks_A Genome polyprotein [con 99.4 4.1E-13 1.4E-17 167.9 16.1 93 1011-1110 176-287 (440)
65 3ber_A Probable ATP-dependent 99.4 4E-13 1.4E-17 155.4 14.0 155 454-615 65-228 (249)
66 2jlq_A Serine protease subunit 99.4 3.6E-13 1.2E-17 168.9 14.4 94 1012-1112 188-301 (451)
67 1qde_A EIF4A, translation init 99.4 6.4E-13 2.2E-17 149.9 14.4 154 454-615 36-197 (224)
68 2z83_A Helicase/nucleoside tri 99.4 3.2E-13 1.1E-17 169.7 13.1 107 1012-1126 190-316 (459)
69 2wv9_A Flavivirin protease NS2 99.4 6.5E-13 2.2E-17 173.8 14.6 96 1011-1113 409-525 (673)
70 3bor_A Human initiation factor 99.4 1.1E-12 3.6E-17 150.4 13.2 156 454-615 52-215 (237)
71 3i32_A Heat resistant RNA depe 99.4 2.4E-12 8.3E-17 153.3 15.4 125 994-1124 12-136 (300)
72 1wrb_A DJVLGB; RNA helicase, D 99.4 2E-12 7E-17 149.0 14.0 155 454-615 45-220 (253)
73 3rc3_A ATP-dependent RNA helic 99.4 6.8E-12 2.3E-16 164.0 19.9 105 1016-1122 324-444 (677)
74 1nkt_A Preprotein translocase 99.4 6.1E-11 2.1E-15 155.1 27.6 115 995-1113 443-609 (922)
75 2whx_A Serine protease/ntpase/ 99.3 1.1E-11 3.9E-16 160.9 19.2 103 1011-1121 354-476 (618)
76 1tf5_A Preprotein translocase 99.3 4.5E-11 1.5E-15 156.6 24.5 115 995-1113 415-537 (844)
77 2fsf_A Preprotein translocase 99.3 3.1E-11 1.1E-15 157.7 22.7 115 995-1113 424-575 (853)
78 3dkp_A Probable ATP-dependent 99.3 1.1E-11 3.8E-16 142.0 16.4 155 454-614 51-220 (245)
79 4f92_B U5 small nuclear ribonu 99.3 3.3E-10 1.1E-14 161.0 31.2 150 454-613 926-1092(1724)
80 2xau_A PRE-mRNA-splicing facto 99.3 3.8E-11 1.3E-15 159.7 19.2 111 1011-1125 302-445 (773)
81 3iuy_A Probable ATP-dependent 99.3 2.5E-11 8.6E-16 137.6 14.2 155 454-615 42-209 (228)
82 3o8b_A HCV NS3 protease/helica 99.2 8.4E-11 2.9E-15 152.5 16.4 102 1011-1126 395-517 (666)
83 3jux_A Protein translocase sub 99.2 5.4E-09 1.8E-13 134.5 31.0 117 994-1114 456-580 (822)
84 4f92_B U5 small nuclear ribonu 99.2 9.8E-10 3.3E-14 156.2 26.9 156 454-622 79-260 (1724)
85 3ly5_A ATP-dependent RNA helic 99.2 9E-11 3.1E-15 136.7 13.2 155 454-615 76-243 (262)
86 3fe2_A Probable ATP-dependent 99.2 1E-10 3.4E-15 134.3 13.1 154 454-614 51-217 (242)
87 3fmo_B ATP-dependent RNA helic 99.0 1.5E-09 5.2E-14 129.1 12.6 155 454-616 114-279 (300)
88 2d7d_A Uvrabc system protein B 98.9 1.9E-08 6.5E-13 131.9 20.7 126 995-1125 428-558 (661)
89 1c4o_A DNA nucleotide excision 98.9 1.4E-08 4.7E-13 133.3 16.8 125 995-1124 422-551 (664)
90 3sjm_A Telomeric repeat-bindin 98.7 7.7E-09 2.6E-13 95.5 5.8 50 1589-1647 10-60 (64)
91 1w0t_A Telomeric repeat bindin 98.7 8.4E-09 2.9E-13 91.7 5.4 49 1590-1647 2-51 (53)
92 1guu_A C-MYB, MYB proto-oncoge 98.7 1.2E-08 3.9E-13 90.4 4.9 47 1590-1647 3-50 (52)
93 2ipc_A Preprotein translocase 98.7 2.2E-06 7.7E-11 112.4 27.0 146 453-626 78-239 (997)
94 1gvd_A MYB proto-oncogene prot 98.6 1.2E-08 4.2E-13 90.3 3.7 46 1590-1646 3-49 (52)
95 2din_A Cell division cycle 5-l 98.6 5.1E-08 1.7E-12 90.6 7.7 55 1590-1656 9-63 (66)
96 2d9a_A B-MYB, MYB-related prot 98.6 2.7E-08 9.4E-13 90.6 4.2 48 1589-1647 7-55 (60)
97 1ity_A TRF1; helix-turn-helix, 98.5 5.2E-08 1.8E-12 91.3 5.5 52 1590-1650 10-62 (69)
98 2elk_A SPCC24B10.08C protein; 98.5 6.5E-08 2.2E-12 87.7 5.4 47 1590-1646 9-56 (58)
99 1x41_A Transcriptional adaptor 98.5 6.9E-08 2.4E-12 88.1 5.5 48 1589-1647 7-55 (60)
100 2dim_A Cell division cycle 5-l 98.4 1.3E-07 4.3E-12 89.0 4.8 48 1589-1647 8-56 (70)
101 2k9n_A MYB24; R2R3 domain, DNA 98.4 3.4E-07 1.2E-11 93.0 7.8 73 1590-1692 1-74 (107)
102 2cu7_A KIAA1915 protein; nucle 98.4 4.2E-07 1.4E-11 85.9 7.0 53 1589-1652 8-60 (72)
103 3osg_A MYB21; transcription-DN 98.4 2.9E-07 9.9E-12 96.2 6.5 74 1589-1692 10-83 (126)
104 3crv_A XPD/RAD3 related DNA he 98.4 1.1E-06 3.7E-11 113.1 12.6 132 453-590 2-187 (551)
105 1gv2_A C-MYB, MYB proto-oncoge 98.3 2.8E-07 9.5E-12 93.2 5.0 73 1589-1691 3-76 (105)
106 2llk_A Cyclin-D-binding MYB-li 98.3 4.4E-07 1.5E-11 85.8 4.5 46 1589-1646 22-67 (73)
107 2yus_A SWI/SNF-related matrix- 98.3 5.4E-07 1.8E-11 86.6 5.0 46 1589-1645 17-62 (79)
108 2vl7_A XPD; helicase, unknown 98.3 1.9E-06 6.4E-11 110.6 11.0 96 999-1100 370-470 (540)
109 3llm_A ATP-dependent RNA helic 98.2 4.1E-06 1.4E-10 95.7 12.4 150 453-616 60-220 (235)
110 3zqc_A MYB3; transcription-DNA 98.2 7.2E-07 2.4E-11 93.8 5.2 73 1590-1692 2-75 (131)
111 1h8a_C AMV V-MYB, MYB transfor 98.2 1.1E-06 3.9E-11 91.9 5.8 73 1589-1691 26-99 (128)
112 2yum_A ZZZ3 protein, zinc fing 98.1 1.1E-06 3.6E-11 83.7 3.7 51 1589-1650 7-63 (75)
113 2k9n_A MYB24; R2R3 domain, DNA 98.1 2.7E-06 9.2E-11 86.4 6.2 50 1590-1650 53-102 (107)
114 2ckx_A NGTRF1, telomere bindin 98.1 2.4E-06 8.1E-11 82.8 5.4 54 1591-1651 1-55 (83)
115 2ltp_A Nuclear receptor corepr 97.3 5.4E-07 1.8E-11 88.6 0.0 52 1590-1652 16-67 (89)
116 3osg_A MYB21; transcription-DN 98.1 2.1E-06 7.2E-11 89.7 4.5 56 1590-1656 62-117 (126)
117 2roh_A RTBP1, telomere binding 98.0 7.5E-06 2.6E-10 84.4 7.3 56 1590-1652 31-87 (122)
118 1gv2_A C-MYB, MYB proto-oncoge 98.0 3.1E-06 1.1E-10 85.5 3.7 48 1590-1648 56-103 (105)
119 2juh_A Telomere binding protei 98.0 2.2E-05 7.5E-10 80.9 9.8 55 1590-1651 17-72 (121)
120 1h89_C C-MYB, MYB proto-oncoge 97.9 5.5E-06 1.9E-10 89.9 5.4 73 1590-1692 58-131 (159)
121 3zqc_A MYB3; transcription-DNA 97.9 4.3E-06 1.5E-10 87.9 2.6 54 1590-1654 54-107 (131)
122 2cqr_A RSGI RUH-043, DNAJ homo 97.8 8.1E-06 2.8E-10 77.2 3.7 48 1589-1647 17-68 (73)
123 2aje_A Telomere repeat-binding 97.8 1.6E-05 5.5E-10 80.1 5.6 55 1590-1651 13-68 (105)
124 4a15_A XPD helicase, ATP-depen 97.8 5.8E-05 2E-09 98.4 12.1 85 453-539 2-89 (620)
125 1h89_C C-MYB, MYB proto-oncoge 97.8 5.4E-06 1.8E-10 89.9 1.3 72 1590-1691 6-78 (159)
126 2cjj_A Radialis; plant develop 97.7 3.4E-05 1.2E-09 76.2 6.1 61 1589-1660 7-72 (93)
127 1h8a_C AMV V-MYB, MYB transfor 97.7 1.1E-05 3.7E-10 84.5 2.4 48 1590-1648 79-126 (128)
128 1x58_A Hypothetical protein 49 97.3 0.00013 4.4E-09 66.3 4.2 52 1589-1648 7-58 (62)
129 2eqr_A N-COR1, N-COR, nuclear 97.3 0.00023 7.9E-09 65.1 5.5 50 1581-1644 6-55 (61)
130 1ign_A Protein (RAP1); RAP1,ye 97.0 0.00022 7.4E-09 80.6 2.2 51 1589-1650 7-63 (246)
131 2cqq_A RSGI RUH-037, DNAJ homo 96.9 0.00096 3.3E-08 63.0 5.2 48 1590-1649 8-59 (72)
132 4b3f_X DNA-binding protein smu 96.6 0.0079 2.7E-07 78.8 13.0 153 451-616 186-401 (646)
133 3upu_A ATP-dependent DNA helic 96.4 0.018 6.3E-07 72.2 14.1 142 453-617 24-167 (459)
134 2gk6_A Regulator of nonsense t 96.3 0.045 1.5E-06 71.5 17.5 151 453-617 179-376 (624)
135 2xzl_A ATP-dependent helicase 96.0 0.065 2.2E-06 71.9 16.9 149 453-616 359-553 (802)
136 3e1s_A Exodeoxyribonuclease V, 96.0 0.053 1.8E-06 70.1 15.3 132 452-617 187-318 (574)
137 2o0j_A Terminase, DNA packagin 95.8 0.047 1.6E-06 67.2 13.0 156 453-628 162-325 (385)
138 2wjy_A Regulator of nonsense t 95.6 0.04 1.4E-06 73.9 12.5 150 453-616 355-551 (800)
139 3cpe_A Terminase, DNA packagin 95.6 0.051 1.7E-06 70.5 13.1 148 452-617 161-316 (592)
140 1fex_A TRF2-interacting telome 95.5 0.01 3.6E-07 53.8 4.2 46 1590-1646 2-57 (59)
141 1wgx_A KIAA1903 protein; MYB D 94.8 0.015 5.2E-07 54.9 3.1 50 1587-1647 5-58 (73)
142 1w36_D RECD, exodeoxyribonucle 94.4 0.11 3.7E-06 67.7 11.2 147 456-618 151-302 (608)
143 2orw_A Thymidine kinase; TMTK, 94.3 0.065 2.2E-06 59.1 7.4 35 476-513 6-40 (184)
144 2iw5_B Protein corest, REST co 94.1 0.025 8.6E-07 63.6 3.4 45 1590-1645 133-177 (235)
145 2vl7_A XPD; helicase, unknown 93.8 0.13 4.5E-06 65.9 9.8 129 453-589 6-188 (540)
146 3hm5_A DNA methyltransferase 1 93.7 0.068 2.3E-06 52.7 5.4 58 1590-1653 30-87 (93)
147 3lfu_A DNA helicase II; SF1 he 93.4 0.39 1.3E-05 62.4 13.6 79 453-537 8-92 (647)
148 2b8t_A Thymidine kinase; deoxy 93.4 0.23 8E-06 56.6 10.0 40 471-513 10-49 (223)
149 2ebi_A DNA binding protein GT- 93.3 0.043 1.5E-06 53.3 3.3 60 1590-1656 4-73 (86)
150 1xx6_A Thymidine kinase; NESG, 91.7 0.36 1.2E-05 53.7 8.5 34 477-513 12-45 (191)
151 1c4o_A DNA nucleotide excision 91.0 0.43 1.5E-05 62.8 9.6 77 453-535 7-85 (664)
152 2d7d_A Uvrabc system protein B 90.9 0.57 1.9E-05 61.6 10.5 77 453-535 11-89 (661)
153 3vkw_A Replicase large subunit 90.5 0.28 9.6E-06 61.3 6.7 107 477-617 165-272 (446)
154 2j9r_A Thymidine kinase; TK1, 90.4 1 3.5E-05 51.0 10.6 35 477-514 32-66 (214)
155 3syl_A Protein CBBX; photosynt 86.2 2.4 8.1E-05 49.5 10.5 38 475-512 69-107 (309)
156 1l8q_A Chromosomal replication 85.2 3.4 0.00012 48.8 11.3 40 474-516 38-77 (324)
157 1a5t_A Delta prime, HOLB; zinc 85.1 4.1 0.00014 48.7 12.0 47 455-501 3-52 (334)
158 1ug2_A 2610100B20RIK gene prod 84.0 3.3 0.00011 40.5 8.2 53 1590-1653 33-88 (95)
159 2orv_A Thymidine kinase; TP4A 82.7 3.6 0.00012 47.2 9.5 34 477-513 23-56 (234)
160 1jbk_A CLPB protein; beta barr 82.5 5.3 0.00018 42.1 10.4 27 473-499 43-69 (195)
161 4a15_A XPD helicase, ATP-depen 82.5 3.2 0.00011 54.1 10.3 88 1000-1093 435-527 (620)
162 2p65_A Hypothetical protein PF 81.4 5.2 0.00018 42.2 9.8 27 473-499 43-69 (187)
163 1sxj_D Activator 1 41 kDa subu 80.9 6.8 0.00023 46.3 11.6 27 474-500 59-85 (353)
164 2xag_B REST corepressor 1; ami 80.2 1.7 5.8E-05 54.4 6.0 55 1590-1655 380-443 (482)
165 1njg_A DNA polymerase III subu 78.0 6.5 0.00022 42.9 9.5 44 456-499 28-71 (250)
166 3u61_B DNA polymerase accessor 77.9 4.7 0.00016 47.5 8.8 41 576-616 105-147 (324)
167 3bos_A Putative DNA replicatio 77.8 7.3 0.00025 43.0 9.9 39 461-499 38-78 (242)
168 3e2i_A Thymidine kinase; Zn-bi 77.7 11 0.00037 42.9 11.1 35 477-514 32-66 (219)
169 3h4m_A Proteasome-activating n 77.5 2.1 7.1E-05 49.5 5.5 25 472-496 50-74 (285)
170 3ec2_A DNA replication protein 77.3 15 0.0005 39.3 11.8 47 456-502 16-67 (180)
171 2qby_B CDC6 homolog 3, cell di 76.8 4.6 0.00016 48.4 8.5 45 456-500 25-72 (384)
172 4a69_C Nuclear receptor corepr 76.6 2.1 7.1E-05 42.5 4.3 42 1590-1642 43-84 (94)
173 2r2a_A Uncharacterized protein 75.7 3.4 0.00012 46.2 6.3 41 574-614 85-132 (199)
174 2chg_A Replication factor C sm 75.1 20 0.00068 38.5 12.3 25 475-499 40-64 (226)
175 2lr8_A CAsp8-associated protei 76.7 0.62 2.1E-05 43.1 0.0 48 1591-1650 15-65 (70)
176 1iqp_A RFCS; clamp loader, ext 74.0 10 0.00035 44.1 10.3 43 456-499 30-72 (327)
177 2crg_A Metastasis associated p 73.9 3.3 0.00011 38.7 4.8 43 1590-1643 8-51 (70)
178 2bjv_A PSP operon transcriptio 73.3 12 0.0004 42.8 10.3 30 465-494 21-50 (265)
179 1w4r_A Thymidine kinase; type 72.9 8.4 0.00029 43.0 8.5 34 477-513 24-57 (195)
180 3vfd_A Spastin; ATPase, microt 72.7 5.6 0.00019 48.5 7.8 41 473-519 148-188 (389)
181 3eie_A Vacuolar protein sortin 70.4 5.1 0.00017 47.6 6.5 23 474-496 52-74 (322)
182 3n70_A Transport activator; si 70.0 6 0.00021 41.2 6.3 29 465-493 16-44 (145)
183 2yqk_A Arginine-glutamic acid 69.4 4.3 0.00015 37.2 4.3 42 1590-1642 9-51 (63)
184 2v1u_A Cell division control p 69.1 7.2 0.00025 46.5 7.5 45 456-500 24-71 (387)
185 2z4s_A Chromosomal replication 68.9 21 0.00071 44.5 11.9 26 474-499 131-156 (440)
186 2qp9_X Vacuolar protein sortin 68.0 5.2 0.00018 48.4 6.0 24 474-497 85-108 (355)
187 3uk6_A RUVB-like 2; hexameric 66.3 7.4 0.00025 46.5 6.9 54 456-513 49-106 (368)
188 1sxj_B Activator 1 37 kDa subu 66.3 10 0.00036 44.0 8.0 25 475-499 44-68 (323)
189 2qz4_A Paraplegin; AAA+, SPG7, 65.6 14 0.00047 41.7 8.6 36 474-515 40-75 (262)
190 1ofh_A ATP-dependent HSL prote 65.4 19 0.00063 41.6 9.9 25 473-497 50-74 (310)
191 1jr3_A DNA polymerase III subu 65.1 29 0.00099 41.2 11.7 45 456-500 21-65 (373)
192 1d2n_A N-ethylmaleimide-sensit 64.9 27 0.00091 40.0 11.0 23 474-496 65-87 (272)
193 4eef_G F-HB80.4, designed hema 63.5 2 6.8E-05 40.6 0.8 43 1590-1643 20-66 (74)
194 4iej_A DNA methyltransferase 1 61.8 12 0.00041 36.9 6.0 57 1590-1652 30-86 (93)
195 3k1j_A LON protease, ATP-depen 59.9 24 0.00083 45.7 10.4 50 470-519 57-117 (604)
196 1fnn_A CDC6P, cell division co 59.7 49 0.0017 39.3 12.4 43 456-498 22-69 (389)
197 4b4c_A Chromodomain-helicase-D 59.5 9.5 0.00032 42.7 5.7 59 1591-1649 135-197 (211)
198 4b4t_J 26S protease regulatory 59.1 19 0.00064 44.5 8.6 43 473-521 182-224 (405)
199 2gno_A DNA polymerase III, gam 57.2 32 0.0011 40.7 10.0 37 459-495 2-40 (305)
200 3co5_A Putative two-component 57.0 7.2 0.00025 40.6 3.9 23 471-493 25-47 (143)
201 3cf0_A Transitional endoplasmi 56.4 15 0.00051 43.1 7.0 24 473-496 49-72 (301)
202 1gm5_A RECG; helicase, replica 55.9 36 0.0012 45.5 11.2 97 993-1090 398-498 (780)
203 1xwi_A SKD1 protein; VPS4B, AA 55.8 12 0.0004 44.6 5.9 38 474-516 46-83 (322)
204 2zan_A Vacuolar protein sortin 55.7 21 0.00073 44.4 8.5 39 474-517 168-206 (444)
205 1sxj_A Activator 1 95 kDa subu 55.7 22 0.00076 45.1 8.8 24 474-497 78-101 (516)
206 2qby_A CDC6 homolog 1, cell di 54.7 18 0.00063 42.8 7.5 46 456-501 25-73 (386)
207 2chq_A Replication factor C sm 54.1 14 0.00047 42.9 6.1 25 475-499 40-64 (319)
208 1sxj_E Activator 1 40 kDa subu 54.0 39 0.0013 40.0 10.1 42 575-616 133-175 (354)
209 1uaa_A REP helicase, protein ( 53.7 17 0.00059 47.5 7.5 69 454-528 2-72 (673)
210 3d8b_A Fidgetin-like protein 1 52.9 18 0.0006 43.6 6.9 24 473-496 117-140 (357)
211 3oiy_A Reverse gyrase helicase 52.0 52 0.0018 39.8 11.0 95 993-1088 45-145 (414)
212 3te6_A Regulatory protein SIR3 51.0 82 0.0028 37.6 12.1 44 456-499 25-71 (318)
213 1r6b_X CLPA protein; AAA+, N-t 49.8 50 0.0017 43.8 11.1 28 472-499 206-233 (758)
214 4fcw_A Chaperone protein CLPB; 49.1 26 0.0009 40.5 7.4 34 475-511 49-82 (311)
215 1ojl_A Transcriptional regulat 48.3 32 0.0011 40.5 8.0 42 471-515 23-64 (304)
216 3ipz_A Monothiol glutaredoxin- 47.5 46 0.0016 33.1 7.8 65 1003-1068 9-79 (109)
217 4dzz_A Plasmid partitioning pr 47.3 1.4E+02 0.0048 31.9 12.5 111 480-629 9-121 (206)
218 2qen_A Walker-type ATPase; unk 46.3 53 0.0018 38.3 9.5 36 456-494 17-52 (350)
219 2q6t_A DNAB replication FORK h 45.2 22 0.00074 44.3 6.2 59 462-522 189-247 (444)
220 3zyw_A Glutaredoxin-3; metal b 44.4 54 0.0018 32.9 7.8 58 1011-1068 14-77 (111)
221 3gx8_A Monothiol glutaredoxin- 44.3 72 0.0025 32.5 8.9 64 1012-1075 15-87 (121)
222 3hu3_A Transitional endoplasmi 44.1 25 0.00087 44.4 6.6 23 472-494 237-259 (489)
223 2kjq_A DNAA-related protein; s 44.1 32 0.0011 36.2 6.4 26 473-498 36-61 (149)
224 1ign_A Protein (RAP1); RAP1,ye 44.0 25 0.00084 40.3 5.7 31 1611-1652 173-203 (246)
225 3t15_A Ribulose bisphosphate c 43.1 20 0.00068 42.0 5.1 24 474-497 37-60 (293)
226 2r6a_A DNAB helicase, replicat 42.4 67 0.0023 39.9 10.0 56 462-519 192-247 (454)
227 1um8_A ATP-dependent CLP prote 42.3 60 0.0021 39.0 9.4 25 473-497 72-96 (376)
228 1w5s_A Origin recognition comp 42.1 88 0.003 37.5 10.8 44 456-499 27-78 (412)
229 3b9p_A CG5977-PA, isoform A; A 42.1 18 0.0006 41.9 4.4 24 473-496 54-77 (297)
230 2yan_A Glutaredoxin-3; oxidore 40.2 70 0.0024 31.2 7.8 63 1003-1067 8-76 (105)
231 1u6t_A SH3 domain-binding glut 39.4 30 0.001 35.8 5.0 45 1015-1059 2-53 (121)
232 2wul_A Glutaredoxin related pr 39.1 92 0.0031 31.9 8.6 72 999-1075 11-89 (118)
233 2wem_A Glutaredoxin-related pr 39.0 91 0.0031 31.7 8.6 57 1012-1068 19-82 (118)
234 4b4t_H 26S protease regulatory 39.0 39 0.0013 42.5 7.0 41 473-519 243-283 (467)
235 1pjr_A PCRA; DNA repair, DNA r 38.6 37 0.0013 44.9 7.2 67 454-526 11-79 (724)
236 2xb0_X Chromo domain-containin 37.8 22 0.00074 41.7 4.1 26 1592-1617 170-196 (270)
237 3u4q_B ATP-dependent helicase/ 37.4 23 0.00078 49.6 5.1 43 475-518 4-46 (1166)
238 2ce7_A Cell division protein F 36.4 61 0.0021 40.8 8.3 22 474-495 50-71 (476)
239 3hws_A ATP-dependent CLP prote 36.0 81 0.0028 37.7 9.0 35 473-513 51-85 (363)
240 2r8r_A Sensor protein; KDPD, P 36.0 46 0.0016 38.0 6.4 46 473-521 6-53 (228)
241 3hjh_A Transcription-repair-co 35.8 54 0.0019 41.4 7.7 69 1010-1092 380-448 (483)
242 2zr9_A Protein RECA, recombina 34.4 50 0.0017 39.9 6.8 56 461-519 47-104 (349)
243 1qvr_A CLPB protein; coiled co 34.4 80 0.0027 42.6 9.5 27 473-499 191-217 (854)
244 1xp8_A RECA protein, recombina 33.7 50 0.0017 40.2 6.6 55 462-519 61-117 (366)
245 3sxu_A DNA polymerase III subu 33.1 2E+02 0.0069 30.6 10.4 39 995-1033 22-60 (150)
246 3pvs_A Replication-associated 33.0 54 0.0018 40.9 7.0 21 475-495 52-72 (447)
247 1nlf_A Regulatory protein REPA 32.8 43 0.0015 38.6 5.7 46 472-519 29-83 (279)
248 2r62_A Cell division protease 32.4 7.2 0.00024 44.5 -1.0 25 473-497 44-68 (268)
249 2eyq_A TRCF, transcription-rep 32.0 1.4E+02 0.0048 41.8 11.4 95 993-1088 633-731 (1151)
250 2w0m_A SSO2452; RECA, SSPF, un 31.9 2E+02 0.0068 31.1 10.7 43 473-518 23-65 (235)
251 3pfi_A Holliday junction ATP-d 31.8 1.5E+02 0.0053 34.6 10.4 21 474-494 56-76 (338)
252 3crv_A XPD/RAD3 related DNA he 30.5 1.4E+02 0.0048 38.0 10.4 88 998-1094 378-474 (551)
253 3nhm_A Response regulator; pro 30.1 2.1E+02 0.007 27.9 9.5 93 1011-1109 26-123 (133)
254 2cvh_A DNA repair and recombin 29.8 1.2E+02 0.0042 32.7 8.5 54 462-521 8-64 (220)
255 4ddu_A Reverse gyrase; topoiso 28.6 1.1E+02 0.0038 42.6 9.5 96 992-1088 101-202 (1104)
256 1wp9_A ATP-dependent RNA helic 28.3 1.8E+02 0.0062 34.9 10.5 90 993-1088 32-131 (494)
257 2w58_A DNAI, primosome compone 27.6 94 0.0032 33.5 7.0 25 474-498 55-79 (202)
258 1wik_A Thioredoxin-like protei 27.0 97 0.0033 30.5 6.4 49 1012-1060 14-68 (109)
259 2zpa_A Uncharacterized protein 26.5 1E+02 0.0035 40.5 8.1 55 453-515 174-228 (671)
260 2wci_A Glutaredoxin-4; redox-a 26.5 1.1E+02 0.0039 31.8 7.0 55 1013-1068 35-96 (135)
261 3i42_A Response regulator rece 26.2 1.1E+02 0.0036 29.8 6.5 104 999-1111 17-125 (127)
262 1hqc_A RUVB; extended AAA-ATPa 26.1 1.6E+02 0.0056 34.0 9.2 25 473-497 38-62 (324)
263 3kl4_A SRP54, signal recogniti 25.8 1.3E+02 0.0045 37.4 8.6 113 477-610 101-218 (433)
264 2y9y_A Imitation switch protei 24.9 1E+02 0.0036 37.5 7.1 61 1591-1654 229-297 (374)
265 1t6n_A Probable ATP-dependent 24.2 4.1E+02 0.014 28.7 11.5 92 993-1088 60-164 (220)
266 3dm5_A SRP54, signal recogniti 24.1 1.9E+02 0.0066 36.1 9.6 134 477-631 104-241 (443)
267 2z43_A DNA repair and recombin 23.9 2E+02 0.0069 33.9 9.5 54 461-514 94-151 (324)
268 3pxi_A Negative regulator of g 23.3 1.2E+02 0.0042 40.1 8.2 23 475-497 523-545 (758)
269 3a10_A Response regulator; pho 22.6 3.5E+02 0.012 25.4 9.4 90 1011-1107 24-116 (116)
270 1ofc_X ISWI protein; nuclear p 21.8 85 0.0029 37.3 5.4 61 1590-1653 212-280 (304)
271 1gku_B Reverse gyrase, TOP-RG; 21.7 1.7E+02 0.0059 40.4 9.3 94 992-1088 79-181 (1054)
272 4b4t_K 26S protease regulatory 21.4 22 0.00076 44.2 0.4 41 473-519 206-246 (428)
273 2oxc_A Probable ATP-dependent 21.3 3.3E+02 0.011 29.9 10.1 90 993-1088 70-172 (230)
274 3ber_A Probable ATP-dependent 21.1 4.8E+02 0.016 29.2 11.5 91 993-1088 89-192 (249)
275 3eqz_A Response regulator; str 21.1 2.8E+02 0.0095 26.8 8.5 96 1012-1112 27-129 (135)
276 3h5i_A Response regulator/sens 20.9 3.7E+02 0.013 26.5 9.5 94 1011-1107 28-123 (140)
277 3fe2_A Probable ATP-dependent 20.5 4.9E+02 0.017 28.7 11.3 91 993-1088 75-182 (242)
278 4b4t_I 26S protease regulatory 20.5 24 0.00082 44.0 0.4 43 473-521 216-258 (437)
279 1n0w_A DNA repair protein RAD5 20.4 5.2E+02 0.018 28.1 11.5 52 462-513 12-67 (243)
280 2j48_A Two-component sensor ki 20.4 1.7E+02 0.0058 27.3 6.5 98 999-1107 15-117 (119)
281 3ly5_A ATP-dependent RNA helic 20.2 5.1E+02 0.018 29.2 11.6 91 993-1088 100-207 (262)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-81 Score=836.36 Aligned_cols=473 Identities=40% Similarity=0.712 Sum_probs=390.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000160 447 FPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 447 vP~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw 526 (1992)
.|+...++|||||+.||+||+.++.++.||||||+||||||+|+|++|+++....+..+|+|||||.+++.||..||.+|
T Consensus 229 p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 229 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKW 308 (800)
T ss_dssp CTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHH
T ss_pred CCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHH
Confidence 45555789999999999999999999999999999999999999999999987778889999999999999999999999
Q ss_pred CCCCeEEEEeCchhHHHHhhhc-c--------CCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHH
Q 000160 527 CPAFKILTYFGSAKERKFKRQG-W--------LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQ 597 (1992)
Q Consensus 527 ~P~lKVL~Y~Gs~keRk~kr~g-w--------~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~q 597 (1992)
+|++++++|+|..+.+...+.. + .....++|+||||+++.++...|....|++|||||||+|||..++.++
T Consensus 309 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~ 388 (800)
T 3mwy_W 309 APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYE 388 (800)
T ss_dssp STTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHH
Confidence 9999999999999887654431 1 234578999999999999999999999999999999999999999999
Q ss_pred HHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhh
Q 000160 598 TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRR 677 (1992)
Q Consensus 598 aLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRR 677 (1992)
++..+++.+||+|||||+||++.|||+||+||+|+.|.....|.-.. ........+.+|+.+|+||++||
T Consensus 389 ~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~----------~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 389 SLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN----------QDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp HHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C----------CTTHHHHHHHHHHHTTGGGEEEC
T ss_pred HHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc----------cchhHHHHHHHHHHHHhHHHhhh
Confidence 99999999999999999999999999999999999998776664111 11223456789999999999999
Q ss_pred hhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHH-HHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccc
Q 000160 678 LKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQ-ATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMS 756 (1992)
Q Consensus 678 tK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~-~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~ 756 (1992)
+|.+|.+.||++.+++++|+||+.|+.+|..++...... .....+...++++++++||++||||+|+.....
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~------- 531 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEE------- 531 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHH-------
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHH-------
Confidence 999999999999999999999999999999887642111 111233456789999999999999998632100
Q ss_pred cccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCC
Q 000160 757 GIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNG 836 (1992)
Q Consensus 757 ~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g 836 (1992)
. . ...
T Consensus 532 --------~---~------------------------------------------------~~~---------------- 536 (800)
T 3mwy_W 532 --------R---V------------------------------------------------LQK---------------- 536 (800)
T ss_dssp --------H---H------------------------------------------------CCC----------------
T ss_pred --------H---H------------------------------------------------HHh----------------
Confidence 0 0 000
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccCh
Q 000160 837 TSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSP 916 (1992)
Q Consensus 837 ~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~ 916 (1992)
++. .. ...
T Consensus 537 ---------------------------------------~~~---------~~------------------------~~~ 544 (800)
T 3mwy_W 537 ---------------------------------------FGD---------GK------------------------MTR 544 (800)
T ss_dssp ---------------------------------------C-------------------------------------CCS
T ss_pred ---------------------------------------ccc---------cc------------------------ccH
Confidence 000 00 000
Q ss_pred HHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccc
Q 000160 917 VERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCG 996 (1992)
Q Consensus 917 ~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSg 996 (1992)
.... +.+...|+
T Consensus 545 ~~~~--------------------------------------------------------------------~~l~~~s~ 556 (800)
T 3mwy_W 545 ENVL--------------------------------------------------------------------RGLIMSSG 556 (800)
T ss_dssp HHHH--------------------------------------------------------------------HHHHHTCH
T ss_pred HHHH--------------------------------------------------------------------HHhhhcCh
Confidence 0000 00112489
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGG 1075 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAGG 1075 (1992)
|+..|..+|.+++..|+||||||||+.|+++|+.+|...|+.|++|+|+++..+|++++++||. +...+|||+||++||
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999997 557789999999999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNT 1151 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~ 1151 (1992)
+||||+.||+||+||++|||+.+.||+||||||||+++|+|||||+++||||+|++++.+|+.|...+|+.|....
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~ 712 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDG 712 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------
T ss_pred CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876543
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.6e-79 Score=794.69 Aligned_cols=504 Identities=31% Similarity=0.511 Sum_probs=414.0
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHH-----ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC----CCcEEEEecCCc
Q 000160 445 TKFPFLLKFPLREYQHIGLDWLVTMY-----EKRLNGILADEMGLGKTIMTIAMLAHLACEKGI----WGPHLIVVPTSV 515 (1992)
Q Consensus 445 t~vP~lLk~~LRpYQ~~GL~WLvsly-----e~~lgGILADEMGLGKTIQtIALLa~La~ekg~----~GP~LIVVPtSL 515 (1992)
..+|+.+...|||||+.|+.||+..+ ..+.||||||+||||||+|+|++|.++....+. .+++|||||+++
T Consensus 46 ~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sl 125 (644)
T 1z3i_X 46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSL 125 (644)
T ss_dssp EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHH
T ss_pred EeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHH
Confidence 34567788999999999999999876 456789999999999999999999998765432 356999999999
Q ss_pred HHHHHHHHHHHCCC-CeEEEEeCc-hhHHHHhhhccCCC----CCceEEEEeehhhhhchhhhhccCccEEEEcCccccC
Q 000160 516 MLNWETEFLKWCPA-FKILTYFGS-AKERKFKRQGWLKP----NSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK 589 (1992)
Q Consensus 516 L~NWe~EfkKw~P~-lKVL~Y~Gs-~keRk~kr~gw~k~----~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IK 589 (1992)
+.||..||.+|+|. +.++.++|. .+.+......|... ..++|+||||+++..+...|....|++|||||||+||
T Consensus 126 l~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 126 VRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCC
T ss_pred HHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecC
Confidence 99999999999985 666666654 44333222223221 3578999999999999888999999999999999999
Q ss_pred ChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCccc-----ccccccHHHHH
Q 000160 590 NWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVE-----GQEKVNKEVVD 664 (1992)
Q Consensus 590 N~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e-----~~~~~~~e~v~ 664 (1992)
|..++.++++..+++.+||+|||||+||++.|||+|++||+|++|++...|..+|..|+..... .........+.
T Consensus 206 n~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 206 NSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp TTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred ChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988732111 11122345678
Q ss_pred HHHHhhhHhhhhhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhh-cchhhHHHHHHHHHHhhCCCcc
Q 000160 665 RLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLAS-ANFFGMISVIMQLRKVCNHPDL 743 (1992)
Q Consensus 665 rLhkvLrpFmLRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~s-gn~~silniLmqLRKvCNHP~L 743 (1992)
.|+.+++||++||+|.+|.+.||++.+++++|+||+.|+.+|+.++........+.. .....++..+++|||+||||.|
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 899999999999999999999999999999999999999999998865433222222 2346688899999999999987
Q ss_pred cCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccc
Q 000160 744 FEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEE 823 (1992)
Q Consensus 744 fe~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~ 823 (1992)
+.... . ...
T Consensus 366 ~~~~~---------------------------------------------------------------~---~~~----- 374 (644)
T 1z3i_X 366 IYEKC---------------------------------------------------------------L---TGE----- 374 (644)
T ss_dssp HHHHH---------------------------------------------------------------H---HTC-----
T ss_pred HHHHH---------------------------------------------------------------h---ccc-----
Confidence 41100 0 000
Q ss_pred cCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhh
Q 000160 824 VGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSY 903 (1992)
Q Consensus 824 ~~p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~ 903 (1992)
..+...
T Consensus 375 --------------------------------------------------~~~~~~------------------------ 380 (644)
T 1z3i_X 375 --------------------------------------------------EGFDGA------------------------ 380 (644)
T ss_dssp --------------------------------------------------TTCTTG------------------------
T ss_pred --------------------------------------------------chhhhH------------------------
Confidence 000000
Q ss_pred ccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhccc
Q 000160 904 LYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQV 983 (1992)
Q Consensus 904 ~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~ 983 (1992)
.+ ..|.. +
T Consensus 381 -----------------------~~----~~~~~-------~-------------------------------------- 388 (644)
T 1z3i_X 381 -----------------------LD----LFPQN-------Y-------------------------------------- 388 (644)
T ss_dssp -----------------------GG----TSCSS-------C--------------------------------------
T ss_pred -----------------------Hh----hcccc-------c--------------------------------------
Confidence 00 00000 0
Q ss_pred ccCCccccccccchHHHHHHHHHHHhh-CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 000160 984 YFPDRRLIQFDCGKLQELAILLRKLKS-DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNP 1062 (1992)
Q Consensus 984 ~fPd~rLiq~dSgKLq~L~~LL~kLks-~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~ 1062 (1992)
.........|||+..|..+|..++. .++||||||||+.++++|+.+|...|+.|++|+|+++..+|++++++|+.+.
T Consensus 389 --~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 466 (644)
T 1z3i_X 389 --STKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPS 466 (644)
T ss_dssp --CSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTT
T ss_pred --cccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 0000011248999999999999874 5899999999999999999999999999999999999999999999999854
Q ss_pred -CceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000160 1063 -KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDD 1141 (1992)
Q Consensus 1063 -~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~ 1141 (1992)
..+|||+||++||+||||++|++||+||++|||+.+.||+||+||+||+++|+||||++.+||||+|++++..|+.|.+
T Consensus 467 ~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~ 546 (644)
T 1z3i_X 467 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSS 546 (644)
T ss_dssp CCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccccCcCChhhhhcCCC
Q 000160 1142 LVIQSGGYNTEFFKKLDPMELFSGHR 1167 (1992)
Q Consensus 1142 ~vIq~g~f~~~~fk~~d~~eLF~~~~ 1167 (1992)
.|++++......|+..++.+||....
T Consensus 547 ~v~~~~~~~~~~~~~~~l~~Lf~~~~ 572 (644)
T 1z3i_X 547 CVVDEEQDVERHFSLGELRELFSLNE 572 (644)
T ss_dssp CCCSCSSSCCCSSCHHHHHHHTCCCS
T ss_pred HHhcCcchhhcCCCHHHHHHHhCCCC
Confidence 99988776666778888889998653
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.5e-72 Score=707.57 Aligned_cols=460 Identities=33% Similarity=0.567 Sum_probs=398.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHC
Q 000160 448 PFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWC 527 (1992)
Q Consensus 448 P~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~ 527 (1992)
|..++..|||||+.|+.||..++..+.||||||+||+|||+++|+++..+.. .+..+|+|||||++++.||..||++|+
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHHC
Confidence 7778899999999999999999888999999999999999999999998764 455679999999999999999999999
Q ss_pred CCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceE
Q 000160 528 PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRR 607 (1992)
Q Consensus 528 P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rR 607 (1992)
|++++.+|+|.... .....++|+||||+++..+.. +....|++|||||||+++|..+++++++..+++.+|
T Consensus 110 ~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~ 180 (500)
T 1z63_A 110 PHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYR 180 (500)
T ss_dssp TTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEE
T ss_pred CCceEEEEecCchh--------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcE
Confidence 99999999997632 122468899999999998866 777899999999999999999999999999999999
Q ss_pred EEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhh--hhhc
Q 000160 608 ILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRD--VEKQ 685 (1992)
Q Consensus 608 LLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~D--Vekq 685 (1992)
|+|||||++|++.|||++++||.|++|++...|..+|..|+.. .......+|+.+++||++||+|.+ +...
T Consensus 181 l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~-------~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 181 IALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKK-------GDNMAKEELKAIISPFILRRTKYDKAIIND 253 (500)
T ss_dssp EEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHT-------TCHHHHHHHHHHHTTTEECCCTTCHHHHTT
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccc-------ccHHHHHHHHHHHhhHeeeecccccchhhc
Confidence 9999999999999999999999999999999999999887642 234456789999999999999976 6779
Q ss_pred CCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHH--hhcchhhHHHHHHHHHHhhCCCcccCCCCccccccccccccccc
Q 000160 686 LPMKQEHVIYCRLSKRQRNLYEDFIASSETQATL--ASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLS 763 (1992)
Q Consensus 686 LP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L--~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~ 763 (1992)
||++.+++++|+|++.|+.+|+.+.......... .......++..+++||++|+||.++....
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~--------------- 318 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--------------- 318 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSC---------------
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCcc---------------
Confidence 9999999999999999999999876543211000 11123457788999999999987631000
Q ss_pred ccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHH
Q 000160 764 SSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKI 843 (1992)
Q Consensus 764 s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l 843 (1992)
T Consensus 319 -------------------------------------------------------------------------------- 318 (500)
T 1z63_A 319 -------------------------------------------------------------------------------- 318 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHh
Q 000160 844 RKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRM 923 (1992)
Q Consensus 844 ~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l 923 (1992)
T Consensus 319 -------------------------------------------------------------------------------- 318 (500)
T 1z63_A 319 -------------------------------------------------------------------------------- 318 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHH
Q 000160 924 IGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAI 1003 (1992)
Q Consensus 924 ~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~ 1003 (1992)
.....++|+..|..
T Consensus 319 ------------------------------------------------------------------~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 319 ------------------------------------------------------------------QSVRRSGKMIRTME 332 (500)
T ss_dssp ------------------------------------------------------------------CCSTTCHHHHHHHH
T ss_pred ------------------------------------------------------------------chhhcchhHHHHHH
Confidence 00013689999999
Q ss_pred HHHHHhhCCCeEEEEeCchHHHHHHHHHHHHc-CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCcc
Q 000160 1004 LLRKLKSDGHRALIFTQMTKMLDILEEFISLY-GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG 1082 (1992)
Q Consensus 1004 LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~-Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~ 1082 (1992)
+|.++...|+|+|||++++.++++|..+|... |+.+.+++|+++..+|++++++|++++.++|+|+||++||+||||++
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 99999999999999999999999999999885 99999999999999999999999998788889999999999999999
Q ss_pred CCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccCcCChhhh
Q 000160 1083 ADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMEL 1162 (1992)
Q Consensus 1083 AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~~~fk~~d~~eL 1162 (1992)
|++||+||++|||..+.||+||+||+||+++|+||+|++++||||+|++++..|+.+.+.+++++......++..++.+|
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l 492 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKV 492 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHH
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcchhccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887655555566667777
Q ss_pred hcC
Q 000160 1163 FSG 1165 (1992)
Q Consensus 1163 F~~ 1165 (1992)
|..
T Consensus 493 ~~~ 495 (500)
T 1z63_A 493 IEL 495 (500)
T ss_dssp HSC
T ss_pred hcc
Confidence 764
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.3e-47 Score=518.84 Aligned_cols=430 Identities=18% Similarity=0.224 Sum_probs=326.0
Q ss_pred CCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCC
Q 000160 451 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAF 530 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~l 530 (1992)
.+.+|||||..++.|++.. .+.|+||||+||+|||+++++++..+.. .|..+++|||||++++.||..||.+|+ ++
T Consensus 150 ~~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l 225 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NL 225 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CC
T ss_pred CCCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CC
Confidence 4578999999999999873 4678999999999999999999988765 566679999999999999999999998 68
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhch---hhhhccCccEEEEcCccccCChhhH---HHHHHHhc--
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS---KVFKRKKWKYLILDEAHLIKNWKSQ---RWQTLLNF-- 602 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~---~~f~r~~W~~LILDEAH~IKN~~Sq---~~qaLl~L-- 602 (1992)
++.+|+|....... ..+-.....++|+|+||+++.++. ..+....|++|||||||+++|..+. .++++..+
T Consensus 226 ~v~v~~~~~~~~~~-~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 226 RFALFDDERYAEAQ-HDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CCEECCHHHHHHHH-HTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred CEEEEccchhhhhh-hhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 88888887654422 222223356899999999998764 4477789999999999999997644 48888888
Q ss_pred ccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCC----------CC-------------cc-------
Q 000160 603 NSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPI----------SG-------------MV------- 652 (1992)
Q Consensus 603 ~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi----------~g-------------~~------- 652 (1992)
++.++|+|||||++|++.|+|++++||.|.+|.+...|..++.... .+ ..
T Consensus 305 ~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 305 HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 7889999999999999999999999999999999998887753211 00 00
Q ss_pred --cc----cccccHHHHHHHHHhh-----hHhhhhhhhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhh
Q 000160 653 --EG----QEKVNKEVVDRLHNVL-----RPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLAS 721 (1992)
Q Consensus 653 --e~----~~~~~~e~v~rLhkvL-----rpFmLRRtK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~s 721 (1992)
.. ...........+..++ ..+++|+++..+. .+|.+..+.+.+.+++.++.+|.....
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~---------- 453 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGI---------- 453 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHH----------
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhh----------
Confidence 00 0000001112222222 3456667676664 799999999999999998888753110
Q ss_pred cchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhh
Q 000160 722 ANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDE 801 (1992)
Q Consensus 722 gn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e 801 (1992)
.+.. .+ . .
T Consensus 454 ---------------~~~~-~~-~-----------------------------------------------------~-- 461 (968)
T 3dmq_A 454 ---------------MGAR-KS-A-----------------------------------------------------E-- 461 (968)
T ss_dssp ---------------TTCC-SS-G-----------------------------------------------------G--
T ss_pred ---------------hhhh-hh-h-----------------------------------------------------H--
Confidence 0000 00 0 0
Q ss_pred hhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhH
Q 000160 802 LNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLR 881 (1992)
Q Consensus 802 ~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~ 881 (1992)
. .... | .+...+
T Consensus 462 ------~-----------------------------~~~~----------------------------~----l~pe~~- 473 (968)
T 3dmq_A 462 ------D-----------------------------RARD----------------------------M----LYPERI- 473 (968)
T ss_dssp ------G-----------------------------GTHH----------------------------H----HCSGGG-
T ss_pred ------H-----------------------------HHhh----------------------------h----cChHHH-
Confidence 0 0000 0 000000
Q ss_pred hHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhh
Q 000160 882 ELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKE 961 (1992)
Q Consensus 882 ~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~ 961 (1992)
. ..++
T Consensus 474 ----------------------------~--------------~~l~--------------------------------- 478 (968)
T 3dmq_A 474 ----------------------------Y--------------QEFE--------------------------------- 478 (968)
T ss_dssp ----------------------------T--------------TTTT---------------------------------
T ss_pred ----------------------------H--------------HHhh---------------------------------
Confidence 0 0000
Q ss_pred hhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH-HcCCcEE
Q 000160 962 KCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS-LYGYTYM 1040 (1992)
Q Consensus 962 ~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~-~~Gi~y~ 1040 (1992)
.+.......+.|+..|..+|.. ..+.|+|||+++..+++.|...|. ..|+.+.
T Consensus 479 ------------------------~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~ 532 (968)
T 3dmq_A 479 ------------------------GDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAA 532 (968)
T ss_dssp ------------------------SSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEE
T ss_pred ------------------------hhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEE
Confidence 0000011246899999999987 578899999999999999999999 4699999
Q ss_pred EecCCCCHHHHHHHHHHHhcCC-CceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEE
Q 000160 1041 RLDGSTQPEERQTLMQRFNTNP-KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRL 1119 (1992)
Q Consensus 1041 RLDGsts~eqRq~lIerFN~D~-~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRL 1119 (1992)
+++|+++..+|+.++++|+.+. .+.| |++|+++|+||||+.|++||+||++|||....|++||+||+||++.|+||++
T Consensus 533 ~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 533 VFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp EECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999999999999854 3555 6788999999999999999999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHH
Q 000160 1120 ISESTIEENILKKANQKRA 1138 (1992)
Q Consensus 1120 Ise~TIEErIlkra~qKr~ 1138 (1992)
++++|+|++|++.+..|..
T Consensus 612 ~~~~t~ee~i~~~~~~k~~ 630 (968)
T 3dmq_A 612 YLEKTAQSVLVRWYHEGLD 630 (968)
T ss_dssp EETTSHHHHHHHHHHHTTC
T ss_pred cCCChHHHHHHHHHHhCCC
Confidence 9999999999999877664
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.3e-43 Score=435.86 Aligned_cols=462 Identities=18% Similarity=0.229 Sum_probs=296.1
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC--CC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC--PA 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~--P~ 529 (1992)
.+|||||..++.|++. + ++||+++||+|||+++++++..+.. +..+++|||||+ +++.||..+|.+|+ |.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 5799999999999876 2 8999999999999999999887765 334689999998 89999999999998 66
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCChhhHHH--HHH-Hhccc
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWKSQRW--QTL-LNFNS 604 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN~~Sq~~--qaL-l~L~a 604 (1992)
.++..|+|......... .| ..++|+|+||+.+..... .+....|++|||||||++++..+... ..+ ...+.
T Consensus 81 ~~v~~~~g~~~~~~~~~-~~---~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK-AW---ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHHH-HH---HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhhhh-hc---cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 79999999875443211 12 257899999999987644 45566899999999999997433221 222 22357
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCC---CChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhh
Q 000160 605 KRRILLTGTPLQNDLMELWSLMHFLMPHIF---QSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRD 681 (1992)
Q Consensus 605 ~rRLLLTGTPLQNsL~ELwSLL~FL~P~if---~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~D 681 (1992)
.++|+|||||. |+..+++.++.+|.+..+ .....+...|..+.. ..............+...+.+++.+|++..
T Consensus 157 ~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 157 PLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIR--FEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCC--EEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCc--eeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999 778888888888865432 222222222211111 000111123445778889999999999887
Q ss_pred hhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcch---hhHHHHHHHHHHhhCCCcccCCCCcccccccccc
Q 000160 682 VEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANF---FGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGI 758 (1992)
Q Consensus 682 VekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~---~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~ 758 (1992)
....+..... ..++.....-....+... ........ ......++.++....+...
T Consensus 234 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 291 (494)
T 1wp9_A 234 AETGLLESSS----PDIPKKEVLRAGQIINEE---MAKGNHDLRGLLLYHAMALKLHHAIELLET--------------- 291 (494)
T ss_dssp HHHTSSSCCC----TTSCHHHHHHHHHHHHHH---HTTTCCSTTTHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHhccccccC----CCcchhHHHHHHHHHHHH---hhccccchhhHHHHHHHHHHHHHHHHHHHh---------------
Confidence 7665543322 223333221111111000 00001111 1111222222222111000
Q ss_pred cccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCch
Q 000160 759 DSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTS 838 (1992)
Q Consensus 759 ~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~ 838 (1992)
.+..
T Consensus 292 ----------------------------------------------------------------------------~~~~ 295 (494)
T 1wp9_A 292 ----------------------------------------------------------------------------QGLS 295 (494)
T ss_dssp ----------------------------------------------------------------------------TCHH
T ss_pred ----------------------------------------------------------------------------hcHH
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHH
Q 000160 839 IFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVE 918 (1992)
Q Consensus 839 ~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~e 918 (1992)
.+......+... . +.. .......+. .. .
T Consensus 296 ~~~~~~~~l~~~----~--------------~~~---~~~~~~~~~-----------------------------~~--~ 323 (494)
T 1wp9_A 296 ALRAYIKKLYEE----A--------------KAG---STKASKEIF-----------------------------SD--K 323 (494)
T ss_dssp HHHHHHHHHHHH----H--------------HTT---CCHHHHHHH-----------------------------TS--H
T ss_pred HHHHHHHHHHHh----h--------------ccc---cchhhhhhh-----------------------------hh--H
Confidence 000000000000 0 000 000000000 00 0
Q ss_pred HHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchH
Q 000160 919 RFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKL 998 (1992)
Q Consensus 919 rl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKL 998 (1992)
.+..+...+.. .......++|+
T Consensus 324 ~~~~~~~~~~~----------------------------------------------------------~~~~~~~~~k~ 345 (494)
T 1wp9_A 324 RMKKAISLLVQ----------------------------------------------------------AKEIGLDHPKM 345 (494)
T ss_dssp HHHHHHHHHHH----------------------------------------------------------HHHHTCSCHHH
T ss_pred HHHHHHHHHHH----------------------------------------------------------HHhcCCCChHH
Confidence 00000000000 00011347899
Q ss_pred HHHHHHHHHHh--hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecC--------CCCHHHHHHHHHHHhcCCCceEEE
Q 000160 999 QELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDG--------STQPEERQTLMQRFNTNPKIFLFI 1068 (1992)
Q Consensus 999 q~L~~LL~kLk--s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDG--------sts~eqRq~lIerFN~D~~ifVfL 1068 (1992)
..|..+|..+. ..++|+|||+++..+++.|..+|...|+.+.+++| +++..+|+.++++|+.+ .+.| |
T Consensus 346 ~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~-~~~v-L 423 (494)
T 1wp9_A 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG-EFNV-L 423 (494)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-SCSE-E
T ss_pred HHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcC-CceE-E
Confidence 99999999976 57899999999999999999999999999999999 89999999999999974 4555 7
Q ss_pred EeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000160 1069 LSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDD 1141 (1992)
Q Consensus 1069 LSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~ 1141 (1992)
++|.++|+||||++|++||+||++|||....|++||+||.|| +++|+|++++|+||+|+.++..|..+..
T Consensus 424 v~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 424 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred EECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999998 8999999999999999999998887653
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=4.9e-42 Score=402.97 Aligned_cols=173 Identities=33% Similarity=0.485 Sum_probs=148.6
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHc-CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLY-GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1072 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~-Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTr 1072 (1992)
.++|+..|..+|..+...|+||||||||+.++++|+.+|... |+.|++|+|+++..+|+.++++|+.++.++|||+||+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 378999999999999989999999999999999999999885 9999999999999999999999999878899999999
Q ss_pred ccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000160 1073 SGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTE 1152 (1992)
Q Consensus 1073 AGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~~ 1152 (1992)
+||+||||++|++||+||+||||..+.||+||+||+||+++|+||+|++.+||||+|++++..|+.+.+.+++++.....
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~ 253 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWIT 253 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHH
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765555
Q ss_pred ccCcCChhhhhcCC
Q 000160 1153 FFKKLDPMELFSGH 1166 (1992)
Q Consensus 1153 ~fk~~d~~eLF~~~ 1166 (1992)
.|+..++.+||...
T Consensus 254 ~~~~~~l~~l~~~~ 267 (271)
T 1z5z_A 254 ELSTEELRKVIELS 267 (271)
T ss_dssp TSCHHHHHHHHSCC
T ss_pred cCCHHHHHHHhccC
Confidence 66777788888753
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1e-37 Score=391.37 Aligned_cols=376 Identities=21% Similarity=0.258 Sum_probs=265.0
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF 530 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~l 530 (1992)
...|++||..++.++.. +.++||+++||+|||++++.++..+ .+++|||||+ +++.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 46899999999998764 3569999999999999999888765 3689999999 8999999999996 67
Q ss_pred e-EEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEE
Q 000160 531 K-ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRIL 609 (1992)
Q Consensus 531 K-VL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLL 609 (1992)
+ +.+|+|..+. ..+|+|+||+.+......+. ..|++|||||||++.+...+ ..+..+.+.++|+
T Consensus 159 ~~v~~~~g~~~~------------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~ 223 (472)
T 2fwr_A 159 EYVGEFSGRIKE------------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLG 223 (472)
T ss_dssp GGEEEBSSSCBC------------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEE
T ss_pred cceEEECCCcCC------------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEE
Confidence 7 8888886532 35799999999987765543 45999999999999987644 3555668899999
Q ss_pred EeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhh-cCCC
Q 000160 610 LTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEK-QLPM 688 (1992)
Q Consensus 610 LTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVek-qLP~ 688 (1992)
|||||.+++-.+ ..|..++.|++.++...++.. .+++
T Consensus 224 lSATp~~~~~~~------------------------------------------~~l~~~~~~~~~~~~~~~l~~~~l~~ 261 (472)
T 2fwr_A 224 LTATFEREDGRH------------------------------------------EILKEVVGGKVFELFPDSLAGKHLAK 261 (472)
T ss_dssp EESCCCCTTSGG------------------------------------------GSHHHHTCCEEEECCHHHHTSCCCCS
T ss_pred EecCccCCCCHH------------------------------------------HHHHHHhCCeEeecCHHHHhcCcCCC
Confidence 999999754221 123344555566665666544 3777
Q ss_pred ceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccccccc
Q 000160 689 KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCS 768 (1992)
Q Consensus 689 K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~~~ 768 (1992)
.....+.+.+++.++..|+.+.... +.......+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~~~--------------------- 299 (472)
T 2fwr_A 262 YTIKRIFVPLAEDERVEYEKREKVY---------------------KQFLRARGITLRR--------------------- 299 (472)
T ss_dssp EEECCEEECCCHHHHHHTTTTTHHH---------------------HSCSSSCCCTTTC---------------------
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHHH---------------------HHHHHhcCccccc---------------------
Confidence 7777889999999999988654321 1111111110000
Q ss_pred cCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHHHHHHH
Q 000160 769 MLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALL 848 (1992)
Q Consensus 769 ~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~ 848 (1992)
...+ ..++..
T Consensus 300 ---~~~~--------~~~~~~----------------------------------------------------------- 309 (472)
T 2fwr_A 300 ---AEDF--------NKIVMA----------------------------------------------------------- 309 (472)
T ss_dssp ---CSSS--------TTTTTT-----------------------------------------------------------
T ss_pred ---hhhH--------HHHHHH-----------------------------------------------------------
Confidence 0000 000000
Q ss_pred HHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhh
Q 000160 849 EERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVE 928 (1992)
Q Consensus 849 e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve 928 (1992)
+...+.....+. .....
T Consensus 310 ---------------------~~~~~~~~~~~~----------------------------------~~~~~-------- 326 (472)
T 2fwr_A 310 ---------------------SGYDERAYEALR----------------------------------AWEEA-------- 326 (472)
T ss_dssp ---------------------TCCSSSSSTTTH----------------------------------HHHHH--------
T ss_pred ---------------------hccCHHHHHHHH----------------------------------HHHHH--------
Confidence 000000000000 00000
Q ss_pred hhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHH
Q 000160 929 SFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKL 1008 (1992)
Q Consensus 929 ~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kL 1008 (1992)
..+....++|+..|..+|..
T Consensus 327 -----------------------------------------------------------~~~~~~~~~k~~~l~~~l~~- 346 (472)
T 2fwr_A 327 -----------------------------------------------------------RRIAFNSKNKIRKLREILER- 346 (472)
T ss_dssp -----------------------------------------------------------HHHHHSCSHHHHHHHHHHHH-
T ss_pred -----------------------------------------------------------HHHhhcChHHHHHHHHHHHh-
Confidence 00001135799999999987
Q ss_pred hhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1009 KSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1009 ks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
..++|+|||+++..+++.|...|. +..++|.++..+|+.++++|++ +.+.| |++|.+++.|||++.+++||+
T Consensus 347 -~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~-g~~~v-Lv~T~~~~~Gldlp~~~~Vi~ 418 (472)
T 2fwr_A 347 -HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT-GRFRA-IVSSQVLDEGIDVPDANVGVI 418 (472)
T ss_dssp -TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH-SSCSB-CBCSSCCCSSSCSCCBSEEEE
T ss_pred -CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC-CCCCE-EEEcCchhcCcccccCcEEEE
Confidence 468999999999999999999884 4578999999999999999987 56666 688999999999999999999
Q ss_pred ecCCCChhhHHHHHHhhcccCCc-CcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000160 1089 YDSDWNPAMDQQAQDRCHRIGQT-REVHIYRLISESTIEENILKKANQKRAL 1139 (1992)
Q Consensus 1089 yD~dWNPa~d~QA~gRahRIGQT-RdV~VYRLIse~TIEErIlkra~qKr~L 1139 (1992)
||++|||....|++||++|+||. +.|.||+|++++|+||+|.++..+|..+
T Consensus 419 ~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 419 MSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp ECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred ECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 99999999999999999999999 8999999999999999999998877765
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.8e-35 Score=370.02 Aligned_cols=146 Identities=19% Similarity=0.282 Sum_probs=87.4
Q ss_pred ccchHHHHHHHHHHHh--hCCCeEEEEeCchHHHHHHHHHHHHc------------CCcEEEecCCCCHHHHHHHHHHHh
Q 000160 994 DCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLY------------GYTYMRLDGSTQPEERQTLMQRFN 1059 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLk--s~G~KVLIFSQ~t~mLDILe~~L~~~------------Gi~y~RLDGsts~eqRq~lIerFN 1059 (1992)
.++|+..|..+|.... ..++|+|||+++..+++.|..+|... |+.+..++|+++..+|+.++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4789999999998876 66899999999999999999999765 677777788899999999999999
Q ss_pred cCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000160 1060 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL 1139 (1992)
Q Consensus 1060 ~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L 1139 (1992)
.++.+.| |++|+++|+||||+++++||+||++|||....|++|| ||.+++.+|.|++++|++++ +.....|..+
T Consensus 450 ~~g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~ 523 (556)
T 4a2p_A 450 TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEM 523 (556)
T ss_dssp ----CCE-EEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHH
T ss_pred ccCceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHH
Confidence 8677776 6889999999999999999999999999999999999 66789999999999999999 5566777777
Q ss_pred HHHHHh
Q 000160 1140 DDLVIQ 1145 (1992)
Q Consensus 1140 ~~~vIq 1145 (1992)
...++.
T Consensus 524 ~~~~i~ 529 (556)
T 4a2p_A 524 MNKAVE 529 (556)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766664
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.3e-35 Score=391.98 Aligned_cols=146 Identities=19% Similarity=0.285 Sum_probs=92.8
Q ss_pred ccchHHHHHHHHHHHh--hCCCeEEEEeCchHHHHHHHHHHHH------------cCCcEEEecCCCCHHHHHHHHHHHh
Q 000160 994 DCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISL------------YGYTYMRLDGSTQPEERQTLMQRFN 1059 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLk--s~G~KVLIFSQ~t~mLDILe~~L~~------------~Gi~y~RLDGsts~eqRq~lIerFN 1059 (1992)
.++|+..|..+|.... ..++|+|||++++.+++.|..+|.. .|+.+..++|+++..+|+.++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 4789999999998754 5679999999999999999999976 4777888899999999999999999
Q ss_pred cCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000160 1060 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL 1139 (1992)
Q Consensus 1060 ~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L 1139 (1992)
.++.+.| |++|+++|.||||++|++||+||++|||....|++|| ||.+++.+|+|++.+|++++ +.....|..+
T Consensus 691 ~~g~~~v-LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~ 764 (797)
T 4a2q_A 691 TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEM 764 (797)
T ss_dssp ---CCSE-EEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHH
T ss_pred ccCCceE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCCcHHHH-HHHHHHHHHH
Confidence 8677776 6899999999999999999999999999999999999 66689999999999999999 6666777777
Q ss_pred HHHHHh
Q 000160 1140 DDLVIQ 1145 (1992)
Q Consensus 1140 ~~~vIq 1145 (1992)
...++.
T Consensus 765 ~~~~i~ 770 (797)
T 4a2q_A 765 MNKAVE 770 (797)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.3e-35 Score=398.78 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=93.7
Q ss_pred ccchHHHHHHHHHHHh--hCCCeEEEEeCchHHHHHHHHHHHHc------------CCcEEEecCCCCHHHHHHHHHHHh
Q 000160 994 DCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLY------------GYTYMRLDGSTQPEERQTLMQRFN 1059 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLk--s~G~KVLIFSQ~t~mLDILe~~L~~~------------Gi~y~RLDGsts~eqRq~lIerFN 1059 (1992)
.++|+..|..+|.... ..++|+|||++++.+++.|..+|... |+.+..++|+++..+|+.++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4789999999999864 55799999999999999999999876 666777788899999999999999
Q ss_pred cCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000160 1060 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL 1139 (1992)
Q Consensus 1060 ~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L 1139 (1992)
.++.+.| |++|+++|+||||+.|++||+||++|||....||+|| ||.+++.+|+|++.+|++++++ ....|..+
T Consensus 691 ~~g~~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~ 764 (936)
T 4a2w_A 691 TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEM 764 (936)
T ss_dssp ---CCSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHH
T ss_pred ccCCeeE-EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHH
Confidence 8677776 6899999999999999999999999999999999999 7778999999999999999977 55666666
Q ss_pred HHHHHh
Q 000160 1140 DDLVIQ 1145 (1992)
Q Consensus 1140 ~~~vIq 1145 (1992)
...++.
T Consensus 765 ~~~~i~ 770 (936)
T 4a2w_A 765 MNKAVE 770 (936)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.8e-34 Score=360.51 Aligned_cols=146 Identities=18% Similarity=0.291 Sum_probs=103.7
Q ss_pred ccchHHHHHHHHHHHhh--CCCeEEEEeCchHHHHHHHHHHHHc------------CCcEEEecCCCCHHHHHHHHHHHh
Q 000160 994 DCGKLQELAILLRKLKS--DGHRALIFTQMTKMLDILEEFISLY------------GYTYMRLDGSTQPEERQTLMQRFN 1059 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks--~G~KVLIFSQ~t~mLDILe~~L~~~------------Gi~y~RLDGsts~eqRq~lIerFN 1059 (1992)
.++|+..|..+|..+.. .++|+|||+++..+++.|..+|... |..+..++|+++..+|+.++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 36899999999988754 4589999999999999999999876 456667777999999999999999
Q ss_pred cCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000160 1060 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL 1139 (1992)
Q Consensus 1060 ~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L 1139 (1992)
.++.+.| |++|+++|+||||+.+++||+||++|||....|++|| ||.+++.+|.|++.++++++. .....|..+
T Consensus 449 ~~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~~-~~~~~~e~~ 522 (555)
T 3tbk_A 449 ASGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEKE-KANMIKEKI 522 (555)
T ss_dssp ---CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHHH-HHHHHHHHH
T ss_pred cCCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHHH-HHhhHHHHH
Confidence 8677877 5799999999999999999999999999999999999 778999999999999999984 444555556
Q ss_pred HHHHHh
Q 000160 1140 DDLVIQ 1145 (1992)
Q Consensus 1140 ~~~vIq 1145 (1992)
....+.
T Consensus 523 ~~~~~~ 528 (555)
T 3tbk_A 523 MNESIL 528 (555)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 12
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=1.9e-34 Score=341.27 Aligned_cols=132 Identities=18% Similarity=0.181 Sum_probs=111.4
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
.|||++.|.+||..+++.||||||||||++|||+||.+|...|+.|+|+||++... +++. .+..++|||+ |++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-----~~~~~~i~Ll-tsa 179 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-----NDFSCTVHLF-SSE 179 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEE-ESS
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc-----ccCCceEEEE-ECC
Confidence 58999999999999999999999999999999999999999999999999996643 3221 1457889877 568
Q ss_pred cccccC-----CccCCEEEEecCCCChhhH-HHHHHhhccc--CCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1074 GGVGIN-----LVGADTVIFYDSDWNPAMD-QQAQDRCHRI--GQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1074 GG~GLN-----LT~AdtVIfyD~dWNPa~d-~QA~gRahRI--GQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
||.|+| |++||+||+||++|||+++ .||+.|+||+ ||+|+|.|||||+.+|||+.++..
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 888886 8999999999999999998 9999999999 789999999999999999999987
No 13
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=2.3e-31 Score=349.13 Aligned_cols=131 Identities=19% Similarity=0.295 Sum_probs=85.9
Q ss_pred ccchHHHHHHHHHHHh--hCCCeEEEEeCchHHHHHHHHHHHHcC----CcEEEecC--------CCCHHHHHHHHHHHh
Q 000160 994 DCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLYG----YTYMRLDG--------STQPEERQTLMQRFN 1059 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLk--s~G~KVLIFSQ~t~mLDILe~~L~~~G----i~y~RLDG--------sts~eqRq~lIerFN 1059 (1992)
.++|+..|..+|.... ..++++|||+++..+++.|..+|...| +.+..++| +++..+|+.++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 3579999999998774 357899999999999999999999998 89999955 999999999999998
Q ss_pred cCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHH
Q 000160 1060 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENI 1129 (1992)
Q Consensus 1060 ~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErI 1129 (1992)
.++.+.| |++|.++|.|||++++++||+||++||+....|++|| +| .++..+|.|++.+++++.-
T Consensus 458 ~~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR---~~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 458 ASGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR---ARGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp ---CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHHH
T ss_pred hcCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-Cc---CCCceEEEEecCCCHHHHH
Confidence 7567776 6899999999999999999999999999999999999 77 4778999999999887754
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=1.4e-30 Score=329.75 Aligned_cols=347 Identities=15% Similarity=0.158 Sum_probs=247.3
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHH--CCC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKW--CPA 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw--~P~ 529 (1992)
..|++||..++.+++. +.++||+++||+|||++++.++...... + .+++|||||+ +|+.||..+|++| .|+
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~-~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN-Y-EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH-C-SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC-C-CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 4899999999999876 3689999999999999998777665442 2 3599999998 6889999999999 566
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-ccceEE
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRI 608 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-~a~rRL 608 (1992)
.++..++|....... .....+|+|+||+.+......+ -..|++|||||||++.+. .....+..+ .+.++|
T Consensus 186 ~~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~~~~-~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (510)
T ss_dssp GGEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEE
T ss_pred cceEEEecCCccccc------cccCCcEEEEeHHHHhhchhhh-hhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEE
Confidence 788888876433221 1246789999999988764322 246899999999999872 233334555 677999
Q ss_pred EEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhhcCCC
Q 000160 609 LLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPM 688 (1992)
Q Consensus 609 LLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVekqLP~ 688 (1992)
+||||| .+...++|++..++.|.++.. +....+. ...+++
T Consensus 257 ~lSATp-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-----------------------------~~~l~~ 296 (510)
T 2oca_A 257 GLSGSL-RDGKANIMQYVGMFGEIFKPV----------TTSKLME-----------------------------DGQVTE 296 (510)
T ss_dssp EEESCG-GGCSSCHHHHHHHHCSEECCC----------CCC--------------------------------------C
T ss_pred EEEeCC-CCCcccHHHhHHhhCCeEEee----------CHHHHhh-----------------------------CCcCCC
Confidence 999999 666677888888876643221 1100000 013444
Q ss_pred ceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccccccc
Q 000160 689 KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCS 768 (1992)
Q Consensus 689 K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~~~ 768 (1992)
.....+.+.++...... +....+... +..+
T Consensus 297 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~------~~~~------------------------------- 326 (510)
T 2oca_A 297 LKINSIFLRYPDEFTTK-------------LKGKTYQEE------IKII------------------------------- 326 (510)
T ss_dssp CEEEEEEEECCHHHHHH-------------HTTCCHHHH------HHHH-------------------------------
T ss_pred ceEEEEeecCChHHhcc-------------ccccchHHH------HHHH-------------------------------
Confidence 44555555555432200 000000000 0000
Q ss_pred cCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCCchHHHHHHHHHH
Q 000160 769 MLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALL 848 (1992)
Q Consensus 769 ~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g~~~~~~l~~~l~ 848 (1992)
T Consensus 327 -------------------------------------------------------------------------------- 326 (510)
T 2oca_A 327 -------------------------------------------------------------------------------- 326 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhh
Q 000160 849 EERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVE 928 (1992)
Q Consensus 849 e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve 928 (1992)
T Consensus 327 -------------------------------------------------------------------------------- 326 (510)
T 2oca_A 327 -------------------------------------------------------------------------------- 326 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHH
Q 000160 929 SFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKL 1008 (1992)
Q Consensus 929 ~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kL 1008 (1992)
.....|...+..++.++
T Consensus 327 ---------------------------------------------------------------~~~~~~~~~l~~~l~~~ 343 (510)
T 2oca_A 327 ---------------------------------------------------------------TGLSKRNKWIAKLAIKL 343 (510)
T ss_dssp ---------------------------------------------------------------HTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------hccHHHHHHHHHHHHHH
Confidence 00012333444555544
Q ss_pred hh-CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec-cccccccCCccCCEE
Q 000160 1009 KS-DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST-RSGGVGINLVGADTV 1086 (1992)
Q Consensus 1009 ks-~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLST-rAGG~GLNLT~AdtV 1086 (1992)
.. .+.++|||+. +..++.|...|...|.++.+++|.++..+|+.++++|++ +.+.|+ ++| .+++.|||++.+++|
T Consensus 344 ~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~-g~~~vL-v~T~~~~~~GiDip~v~~v 420 (510)
T 2oca_A 344 AQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN-GKGIII-VASYGVFSTGISVKNLHHV 420 (510)
T ss_dssp HTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH-CCSCEE-EEEHHHHHHSCCCCSEEEE
T ss_pred HhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC-CCCCEE-EEEcChhhcccccccCcEE
Confidence 33 4567788887 888888999999999999999999999999999999985 566664 555 999999999999999
Q ss_pred EEecCCCChhhHHHHHHhhcccCCcC-cEEEEEEEeCCCHHHHHH
Q 000160 1087 IFYDSDWNPAMDQQAQDRCHRIGQTR-EVHIYRLISESTIEENIL 1130 (1992)
Q Consensus 1087 IfyD~dWNPa~d~QA~gRahRIGQTR-dV~VYRLIse~TIEErIl 1130 (1992)
|++|++||+....|++||++|.|+.+ .|.||.++...++.++++
T Consensus 421 i~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 421 VLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp EESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSS
T ss_pred EEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhh
Confidence 99999999999999999999999998 799999999887655443
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=335.87 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=114.0
Q ss_pred cchHHHHHHHHHHHhh--C-CCeEEEEeCchHHHHHHHHHHHHc------CCcEEEecCC--------CCHHHHHHHHHH
Q 000160 995 CGKLQELAILLRKLKS--D-GHRALIFTQMTKMLDILEEFISLY------GYTYMRLDGS--------TQPEERQTLMQR 1057 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks--~-G~KVLIFSQ~t~mLDILe~~L~~~------Gi~y~RLDGs--------ts~eqRq~lIer 1057 (1992)
+.|+..|..+|..... . +.++|||+++..+++.|..+|..+ |+.+..++|. ++..+|+.++++
T Consensus 380 ~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 380 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 4566677777776433 2 789999999999999999999987 9999999999 999999999999
Q ss_pred HhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000160 1058 FNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKR 1137 (1992)
Q Consensus 1058 FN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr 1137 (1992)
|+. +.+.| |++|.++|+|||++.+++||+||++|||....|++||+.|-| ..++.+...++.+.........+.
T Consensus 460 F~~-g~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~ 533 (699)
T 4gl2_A 460 FRT-GKINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFRE 533 (699)
T ss_dssp HCC----CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHH
T ss_pred Hhc-CCCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHH
Confidence 986 56666 689999999999999999999999999999999999986655 555566777776666555555666
Q ss_pred HHHHHHHh
Q 000160 1138 ALDDLVIQ 1145 (1992)
Q Consensus 1138 ~L~~~vIq 1145 (1992)
.+....+.
T Consensus 534 ~~~~~~~~ 541 (699)
T 4gl2_A 534 KMMYKAIH 541 (699)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665654
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=5.9e-28 Score=311.68 Aligned_cols=162 Identities=20% Similarity=0.272 Sum_probs=103.7
Q ss_pred CCCCChHHHHHHHHHHHHHHccC-ccEEEEcCCCChHHHHHHHHHHHHHHhc------CCCCcEEEEecC-CcHHHHH-H
Q 000160 451 LKFPLREYQHIGLDWLVTMYEKR-LNGILADEMGLGKTIMTIAMLAHLACEK------GIWGPHLIVVPT-SVMLNWE-T 521 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~~-lgGILADEMGLGKTIQtIALLa~La~ek------g~~GP~LIVVPt-SLL~NWe-~ 521 (1992)
....||+||..++.|++..+.++ .++||++.||+|||++++.++..+.... ...+++|||||+ +|+.||. .
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 34689999999999998766655 5689999999999999999888776532 145789999995 7889999 8
Q ss_pred HHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhch------hhhhccCccEEEEcCccccCChhhHH
Q 000160 522 EFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS------KVFKRKKWKYLILDEAHLIKNWKSQR 595 (1992)
Q Consensus 522 EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~------~~f~r~~W~~LILDEAH~IKN~~Sq~ 595 (1992)
+|++|.+... .+.+. ......+|+|+||+.+.... ..|....|++|||||||++.+.....
T Consensus 255 ~~~~~~~~~~--~~~~~-----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~ 321 (590)
T 3h1t_A 255 TFTPFGDARH--KIEGG-----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSN 321 (590)
T ss_dssp CCTTTCSSEE--ECCC-------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHhcchhhh--hhhcc-----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHH
Confidence 8888865432 22221 12246789999999997752 23445579999999999998764344
Q ss_pred HH-HHHhcccceEEEEeccCCCCChHHHHHH
Q 000160 596 WQ-TLLNFNSKRRILLTGTPLQNDLMELWSL 625 (1992)
Q Consensus 596 ~q-aLl~L~a~rRLLLTGTPLQNsL~ELwSL 625 (1992)
++ .+..+...++++|||||..+...+++.+
T Consensus 322 ~~~il~~~~~~~~l~lTATP~~~~~~~~~~~ 352 (590)
T 3h1t_A 322 WREILEYFEPAFQIGMTATPLREDNRDTYRY 352 (590)
T ss_dssp CHHHHHHSTTSEEEEEESSCSCTTTHHHHHH
T ss_pred HHHHHHhCCcceEEEeccccccccchhHHHH
Confidence 44 4455677899999999999877665543
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=1.5e-26 Score=281.13 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|...|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.+++.|+. +.+.| |++|.+++
T Consensus 236 ~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~ 311 (391)
T 1xti_A 236 EKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRI-LVATNLFG 311 (391)
T ss_dssp GHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TCCSE-EEESCCCS
T ss_pred hHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc-CCCcE-EEECChhh
Confidence 4566677777654 67899999999999999999999999999999999999999999999985 45555 68999999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
.|||+.++++||+||++||+....|++||++|.|+...+.+ |++... +.++++.
T Consensus 312 ~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~~-~~~~~~~ 365 (391)
T 1xti_A 312 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDEN-DAKILND 365 (391)
T ss_dssp SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEE--EECSHH-HHHHHHH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEE--EEcccc-hHHHHHH
Confidence 99999999999999999999999999999999998666544 455432 3344443
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.94 E-value=3.5e-25 Score=270.50 Aligned_cols=123 Identities=23% Similarity=0.313 Sum_probs=108.2
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+..|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.+++.|+. +.+.| |++|.+++
T Consensus 244 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-Lv~T~~~~ 319 (400)
T 1s2m_A 244 QKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ-GKVRT-LVCSDLLT 319 (400)
T ss_dssp GHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT-TSSSE-EEESSCSS
T ss_pred hHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc-CCCcE-EEEcCccc
Confidence 4666677777654 56799999999999999999999999999999999999999999999985 55665 68899999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCC
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1124 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1124 (1992)
.|||+..+++||+||++||+....|++||++|.||.. .+|.|++.+.
T Consensus 320 ~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~ 366 (400)
T 1s2m_A 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWND 366 (400)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG
T ss_pred cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccch
Confidence 9999999999999999999999999999999999754 5566777763
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=1.9e-25 Score=267.95 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..+|. ..+.++|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+++.
T Consensus 226 ~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~ 300 (367)
T 1hv8_A 226 RFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ-KKIRI-LIATDVMSR 300 (367)
T ss_dssp HHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT-TSSSE-EEECTTHHH
T ss_pred HHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc-CCCeE-EEECChhhc
Confidence 4455555543 567899999999999999999999999999999999999999999999986 55665 678899999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCH
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1125 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1125 (1992)
|+|+..+++||+||++||+....|++||++|.|+...+ |.|+++...
T Consensus 301 Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 347 (367)
T 1hv8_A 301 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRREY 347 (367)
T ss_dssp HCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTSH
T ss_pred CCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHHH
Confidence 99999999999999999999999999999999987755 445666543
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.93 E-value=6.7e-25 Score=269.14 Aligned_cols=122 Identities=21% Similarity=0.315 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+++.
T Consensus 263 k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~~ 338 (410)
T 2j0s_A 263 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS-GASRV-LISTDVWAR 338 (410)
T ss_dssp HHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH-TSSCE-EEECGGGSS
T ss_pred HHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC-CCCCE-EEECChhhC
Confidence 666677777665 34599999999999999999999999999999999999999999999986 45655 689999999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCC
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1124 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1124 (1992)
|||+..+++||+||++||+....|++||++|.|+.. .+|.|+..+.
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 999999999999999999999999999999999764 5556777654
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=2.5e-25 Score=264.20 Aligned_cols=117 Identities=16% Similarity=0.275 Sum_probs=101.6
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEec
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD 1090 (1992)
.+.++|||++....++.|...|. .+..++|.++..+|..++++|++ +.+.| |++|.+++.|||+..+++||+||
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE-GEYDM-LITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECHHHHTTCCCCCBSEEEESS
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc-CCCcE-EEEcCccccCCCccCCCEEEEec
Confidence 56799999999999999988887 67899999999999999999986 55665 68899999999999999999999
Q ss_pred CCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000160 1091 SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1134 (1992)
Q Consensus 1091 ~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~ 1134 (1992)
++|++....|++||++|.||...+.+|.. .+.++.++|.+..+
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999988888877 66667777766544
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.93 E-value=7e-25 Score=268.42 Aligned_cols=122 Identities=24% Similarity=0.309 Sum_probs=95.6
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+..|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.+++.|+. +.+.| |++|.+++
T Consensus 266 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~ 341 (414)
T 3eiq_A 266 WKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS-GSSRV-LITTDLLA 341 (414)
T ss_dssp THHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC-C---C-EEECSSCC
T ss_pred hHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc-CCCcE-EEECCccc
Confidence 3667777777654 45699999999999999999999999999999999999999999999976 45555 78999999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
.|||+.++++||+||++||+....|++||++|.|+.. .+|.|++++
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 9999999999999999999999999999999999765 556677776
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.92 E-value=5.1e-24 Score=258.16 Aligned_cols=120 Identities=22% Similarity=0.298 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+++.
T Consensus 230 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~~ 305 (395)
T 3pey_A 230 KFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE-GRSKV-LITTNVLAR 305 (395)
T ss_dssp HHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCCE-EEECGGGSS
T ss_pred HHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC-CCCCE-EEECChhhc
Confidence 444555555433 45799999999999999999999999999999999999999999999986 55665 789999999
Q ss_pred ccCCccCCEEEEecCCC------ChhhHHHHHHhhcccCCcCcEEEEEEEeC
Q 000160 1077 GINLVGADTVIFYDSDW------NPAMDQQAQDRCHRIGQTREVHIYRLISE 1122 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dW------NPa~d~QA~gRahRIGQTRdV~VYRLIse 1122 (1992)
|||+.++++||+||++| |+....|++||++|.|+...+ |.|+..
T Consensus 306 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~ 355 (395)
T 3pey_A 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA--ISFVHD 355 (395)
T ss_dssp SCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS
T ss_pred CCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceE--EEEEec
Confidence 99999999999999999 999999999999999975544 445554
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.92 E-value=4.5e-25 Score=268.03 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEec
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD 1090 (1992)
.+.++|||++....++.+...|...|+.+..++|.++..+|+.+++.|+. +.+.| |++|.+++.|||+..+++||+||
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRI-LISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC-CCCcE-EEECChhhcCCCcccCCEEEEeC
Confidence 34689999999999999999999999999999999999999999999975 45555 68999999999999999999999
Q ss_pred CCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1091 SDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1091 ~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
++|++....|++||++|.|+...+ |.|++.+
T Consensus 336 ~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 366 (394)
T 1fuu_A 336 LPANKENYIHRIGRGGRFGRKGVA--INFVTNE 366 (394)
T ss_dssp ---------------------------------
T ss_pred CCCCHHHHHHHcCcccCCCCCceE--EEEEchh
Confidence 999999999999999999986654 4455554
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.2e-22 Score=249.28 Aligned_cols=123 Identities=21% Similarity=0.308 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|...|..+|... ..+.++|||++.....+.|..+|...|+.+..++|.++.++|..++++|+. +.+.| |++|.+++
T Consensus 261 ~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lvaT~~~~ 337 (417)
T 2i4i_A 261 DKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPI-LVATAVAA 337 (417)
T ss_dssp GHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH-TSSCE-EEECHHHH
T ss_pred hHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc-CCCCE-EEECChhh
Confidence 3555666666553 356799999999999999999999999999999999999999999999986 55665 78899999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
.|||+..+++||+||++|++....|++||++|.|+. -.+|.|+.+.
T Consensus 338 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 383 (417)
T 2i4i_A 338 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNER 383 (417)
T ss_dssp TTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGG
T ss_pred cCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEEEEEccc
Confidence 999999999999999999999999999999999975 4555666654
No 26
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.91 E-value=1.4e-22 Score=252.54 Aligned_cols=120 Identities=17% Similarity=0.299 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|...|..+|... +.++|||++.....+.|..+|...|+.+..++|.++..+|..++++|.. +++.| |++|.+++
T Consensus 287 ~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~v-LvaT~v~~ 361 (434)
T 2db3_A 287 AKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN-GSMKV-LIATSVAS 361 (434)
T ss_dssp GHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT-SSCSE-EEECGGGT
T ss_pred HHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEEchhhh
Confidence 3566666666553 4469999999999999999999999999999999999999999999986 56666 68999999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeC
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1122 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1122 (1992)
.|||+.++++||+||++|++....|++||++|.|++..+ |.|+..
T Consensus 362 rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~~ 406 (434)
T 2db3_A 362 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFDP 406 (434)
T ss_dssp SSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEECT
T ss_pred CCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEec
Confidence 999999999999999999999999999999999986544 445663
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.90 E-value=1.5e-22 Score=247.29 Aligned_cols=130 Identities=23% Similarity=0.288 Sum_probs=108.0
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+..|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+++
T Consensus 252 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~ 327 (412)
T 3fht_A 252 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKV-LVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECGGGT
T ss_pred HHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC-CCCcE-EEEcCccc
Confidence 3566666666654 56799999999999999999999999999999999999999999999986 55665 78899999
Q ss_pred cccCCccCCEEEEecCCCCh------hhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1076 VGINLVGADTVIFYDSDWNP------AMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNP------a~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
.|||+.++++||+||++||+ ....|++||++|.|+.. .+|.|+... -+..+++.
T Consensus 328 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~-~~~~~~~~ 387 (412)
T 3fht_A 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG--LAVNMVDSK-HSMNILNR 387 (412)
T ss_dssp SSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE--EEEEEECSH-HHHHHHHH
T ss_pred cCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc--eEEEEEcCh-hhHHHHHH
Confidence 99999999999999999987 58999999999999654 445555442 23444444
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.89 E-value=3.1e-22 Score=246.72 Aligned_cols=115 Identities=21% Similarity=0.165 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEE-EecCCCCHHHHHHHHHHHhcCCCceEEEEe---c
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYM-RLDGSTQPEERQTLMQRFNTNPKIFLFILS---T 1071 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~-RLDGsts~eqRq~lIerFN~D~~ifVfLLS---T 1071 (1992)
.|...|..+|.. .+.++|||++.....+.|...|...|+.+. .++|. +|+ +++|.+ +.+.|++.+ |
T Consensus 239 ~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~-g~~~vLvat~s~T 308 (414)
T 3oiy_A 239 RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKV-GKINILIGVQAYY 308 (414)
T ss_dssp CCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHT-TSCSEEEEECCTT
T ss_pred CHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhC-CCCeEEEEecCcC
Confidence 355666677766 358999999999999999999999999998 88884 455 999986 678886664 9
Q ss_pred cccccccCCcc-CCEEEEecCC--CChhhHHHHHHhhcccCCc--CcEEEEEEE
Q 000160 1072 RSGGVGINLVG-ADTVIFYDSD--WNPAMDQQAQDRCHRIGQT--REVHIYRLI 1120 (1992)
Q Consensus 1072 rAGG~GLNLT~-AdtVIfyD~d--WNPa~d~QA~gRahRIGQT--RdV~VYRLI 1120 (1992)
.+++.|||+.+ +++||+||++ +++....|++||++|.|+. +.-.+|.|+
T Consensus 309 ~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 309 GKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred chhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999999999 9999999999 9999999999999999986 677777777
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.87 E-value=3e-21 Score=246.27 Aligned_cols=116 Identities=17% Similarity=0.255 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|+..|..+|... .+.++|||+......+.+...|...|+.+..++|+++.++|..++++|.. +++.| |++|.+.|.
T Consensus 223 ~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~v-lVaT~a~~~ 298 (523)
T 1oyw_A 223 PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR-DDLQI-VVATVAFGM 298 (523)
T ss_dssp HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECTTSCT
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeE-EEEechhhC
Confidence 444555555543 57899999999999999999999999999999999999999999999986 45666 688999999
Q ss_pred ccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEE
Q 000160 1077 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1116 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1116 (1992)
|||+..++.||+||+++++....|++||++|.|+...+.+
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 9999999999999999999999999999999998766554
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.87 E-value=3.9e-21 Score=264.20 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=97.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHc--CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLY--GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~--Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf 1088 (1992)
.|.+||||++....++.+...|... ++.+..++|.++..+|++++++|.+ +++.| |++|.+++.|||+..+++||+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~-g~~~V-LVaT~v~e~GiDip~v~~VIi 888 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGIDIPTANTIII 888 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT-TSCCE-EEESSTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEECCcceeeecccCCcEEEE
Confidence 5789999999999999999999877 8999999999999999999999985 66766 678899999999999999999
Q ss_pred ecC-CCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1089 YDS-DWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1089 yD~-dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
+++ .|++....|++||++|.|+. -++|.|+..+
T Consensus 889 ~~~~~~~l~~l~Qr~GRvgR~g~~--g~~~ll~~~~ 922 (1151)
T 2eyq_A 889 ERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLTPHP 922 (1151)
T ss_dssp TTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEECCG
T ss_pred eCCCCCCHHHHHHHHhccCcCCCc--eEEEEEECCc
Confidence 999 59999999999999999964 4556666654
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.86 E-value=3.9e-20 Score=238.56 Aligned_cols=117 Identities=17% Similarity=0.270 Sum_probs=101.4
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHc---CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEE
Q 000160 1010 SDGHRALIFTQMTKMLDILEEFISLY---GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTV 1086 (1992)
Q Consensus 1010 s~G~KVLIFSQ~t~mLDILe~~L~~~---Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtV 1086 (1992)
..+.++|||+......+.|...|... |+.+..++|.++..+|..++++|.. +.+.| |++|.+++.|||+.++++|
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~-g~~~v-LVaT~~~~~GiDip~v~~V 363 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGI-LVCTDVGARGMDFPNVHEV 363 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEE-EEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc-CCCeE-EEEcchhhcCCCcccCCEE
Confidence 45789999999999999999999877 9999999999999999999999986 56665 6889999999999999999
Q ss_pred EEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1087 IFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1087 IfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
|+||+++++....|++||++|.|+.. .++.|++.. |..+++.
T Consensus 364 I~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~ 405 (579)
T 3sqw_A 364 LQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVRE 405 (579)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHH
T ss_pred EEcCCCCCHHHhhhhccccccCCCCc--eEEEEEccc--HHHHHHH
Confidence 99999999999999999999999754 444566654 4444443
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.85 E-value=2.9e-20 Score=240.17 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=97.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEec
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD 1090 (1992)
.+.++|||+......+.|...|...|+....++|+++..+|..++++|.. +.+.| |++|.+.|.|||+...+.||+||
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~-g~~~V-lVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA-NEIQV-VVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSSSE-EEECTTSCTTCCCSCEEEEEESS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeE-EEEechhhcCCCcccccEEEEeC
Confidence 57899999999999999999999999999999999999999999999986 56666 68899999999999999999999
Q ss_pred CCCChhhHHHHHHhhcccCCcCcEEEE
Q 000160 1091 SDWNPAMDQQAQDRCHRIGQTREVHIY 1117 (1992)
Q Consensus 1091 ~dWNPa~d~QA~gRahRIGQTRdV~VY 1117 (1992)
+++++....|++||++|.|+...+.++
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999999999999987665544
No 33
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.84 E-value=1.3e-19 Score=232.26 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=101.5
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHc---CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEE
Q 000160 1010 SDGHRALIFTQMTKMLDILEEFISLY---GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTV 1086 (1992)
Q Consensus 1010 s~G~KVLIFSQ~t~mLDILe~~L~~~---Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtV 1086 (1992)
..+.++|||+......+.|...|... |+.+..++|.++..+|..+++.|.. +.+.| |++|.+++.|||+..+++|
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~v-LvaT~~~~~GiDip~v~~V 414 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGI-LVCTDVGARGMDFPNVHEV 414 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEE-EEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc-CCCCE-EEEcchhhcCCCcccCCEE
Confidence 45789999999999999999999877 9999999999999999999999986 56665 6889999999999999999
Q ss_pred EEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1087 IFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1087 IfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
|+||+++++....|++||++|.|+. -.++.|++.+ |...++.
T Consensus 415 I~~~~p~s~~~y~Qr~GRagR~g~~--g~~i~~~~~~--e~~~~~~ 456 (563)
T 3i5x_A 415 LQIGVPSELANYIHRIGRTARSGKE--GSSVLFICKD--ELPFVRE 456 (563)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCC--EEEEEEEEGG--GHHHHHH
T ss_pred EEECCCCchhhhhhhcCccccCCCC--ceEEEEEchh--HHHHHHH
Confidence 9999999999999999999999965 4455566654 3344443
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.3e-21 Score=248.52 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1076 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~ 1076 (1992)
|...|..++... .+.++|||++....+..|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+++.
T Consensus 344 k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~-g~~~V-LVaT~~l~~ 419 (508)
T 3fho_A 344 KYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV-GTSKV-LVTTNVIAR 419 (508)
T ss_dssp HHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS-SSCCC-CEECC----
T ss_pred HHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC-CCCeE-EEeCChhhc
Confidence 444445555433 45799999999999999999999999999999999999999999999975 55655 788999999
Q ss_pred ccCCccCCEEEEecCC------CChhhHHHHHHhhcccCCcCcEEEEEEEeC
Q 000160 1077 GINLVGADTVIFYDSD------WNPAMDQQAQDRCHRIGQTREVHIYRLISE 1122 (1992)
Q Consensus 1077 GLNLT~AdtVIfyD~d------WNPa~d~QA~gRahRIGQTRdV~VYRLIse 1122 (1992)
|||+..+++||+||++ +++....|++||++|.|+...+.+ |+..
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~--l~~~ 469 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSIN--FVHD 469 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEE--EECT
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEE--EEeC
Confidence 9999999999999999 789999999999999997655554 4543
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.83 E-value=6e-21 Score=240.00 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecC
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1091 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~ 1091 (1992)
+.++|||++.....+.|...|...|+.+..++|.++..+|..++++|.. +.+.| |++|.+++.|||+..+++||+||+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~-g~~~i-Lv~T~~~~~GlDip~v~~VI~~d~ 410 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKV-LVTTNVCARGIDVEQVSVVINFDL 410 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc-CCCcE-EEEccccccCCccccCCEEEEecC
Confidence 4589999999999999999999999999999999999999999999986 56665 788999999999999999999999
Q ss_pred CCCh------hhHHHHHHhhcccCCcCcEEEEEEEeC
Q 000160 1092 DWNP------AMDQQAQDRCHRIGQTREVHIYRLISE 1122 (1992)
Q Consensus 1092 dWNP------a~d~QA~gRahRIGQTRdV~VYRLIse 1122 (1992)
+|++ ....|++||++|.|+...+. .|+..
T Consensus 411 p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i--~~~~~ 445 (479)
T 3fmp_B 411 PVDKDGNPDNETYLHRIGRTGRFGKRGLAV--NMVDS 445 (479)
T ss_dssp -------------------------------------
T ss_pred CCCCccCCCHHHHHHHhcccccCCCCceEE--EEEcC
Confidence 9977 58899999999999755443 34443
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.2e-19 Score=240.12 Aligned_cols=144 Identities=14% Similarity=0.175 Sum_probs=107.4
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF 530 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~l 530 (1992)
.+.|++||..++.++.. +.+.|++..+|.|||+++...+..... .+ +.+|||+|+ .|..||..+|.++++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~-~g--~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK-NK--QRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH-TT--CEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc-cC--CeEEEECChHHHHHHHHHHHHHHhC--
Confidence 35699999999999765 678999999999999987655544332 22 589999998 788999999999987
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCChh-hHHHHHHH-hc-ccc
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWK-SQRWQTLL-NF-NSK 605 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN~~-Sq~~qaLl-~L-~a~ 605 (1992)
++..++|..... ...+|+|+|++.+..... ...-..|.+|||||||++.+.. ...|..++ .+ ...
T Consensus 155 ~vglltGd~~~~----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 DVGLMTGDITIN----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp CEEEECSSCEEC----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred CEEEEeCCCccC----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 677788865321 246799999998864321 1222468999999999998752 44454443 34 346
Q ss_pred eEEEEeccC
Q 000160 606 RRILLTGTP 614 (1992)
Q Consensus 606 rRLLLTGTP 614 (1992)
+.++||||+
T Consensus 225 ~il~LSATi 233 (1010)
T 2xgj_A 225 RYVFLSATI 233 (1010)
T ss_dssp EEEEEECCC
T ss_pred eEEEEcCCC
Confidence 789999994
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.81 E-value=4.6e-20 Score=243.80 Aligned_cols=156 Identities=20% Similarity=0.257 Sum_probs=110.5
Q ss_pred CCChHHHHHHHHHHHHHHccC--ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC-
Q 000160 453 FPLREYQHIGLDWLVTMYEKR--LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP- 528 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~--lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P- 528 (1992)
..|+++|..++..+..-...+ .+.||..++|.|||++++..+..... .| +.+|||||+ .+..||..+|.+|++
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~-~g--~qvlvlaPtr~La~Q~~~~l~~~~~~ 443 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-AG--FQTAFMVPTSILAIQHYRRTVESFSK 443 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-HT--SCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH-cC--CeEEEEeCcHHHHHHHHHHHHHHhhh
Confidence 379999999999888754443 58899999999999998776665443 23 479999999 678899999999987
Q ss_pred -CCeEEEEeCchhHHHHhhh-ccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-ccc
Q 000160 529 -AFKILTYFGSAKERKFKRQ-GWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSK 605 (1992)
Q Consensus 529 -~lKVL~Y~Gs~keRk~kr~-gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-~a~ 605 (1992)
++++..++|.......... .....+..+|+|+|+..+... +.-.++.+||+||+|++... + ...+... ...
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~--q-r~~l~~~~~~~ 517 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVK--Q-REALMNKGKMV 517 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSSCC
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHH--H-HHHHHHhCCCC
Confidence 6889999987643321110 011234689999999887543 23356899999999997321 1 1112222 346
Q ss_pred eEEEEeccCCCC
Q 000160 606 RRILLTGTPLQN 617 (1992)
Q Consensus 606 rRLLLTGTPLQN 617 (1992)
+.++|||||..+
T Consensus 518 ~vL~mSATp~p~ 529 (780)
T 1gm5_A 518 DTLVMSATPIPR 529 (780)
T ss_dssp CEEEEESSCCCH
T ss_pred CEEEEeCCCCHH
Confidence 799999999753
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.7e-17 Score=227.30 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhhC-CCeEEEEeCchHHHHHHHHHHHHcCCc--------------------------------------
Q 000160 998 LQELAILLRKLKSD-GHRALIFTQMTKMLDILEEFISLYGYT-------------------------------------- 1038 (1992)
Q Consensus 998 Lq~L~~LL~kLks~-G~KVLIFSQ~t~mLDILe~~L~~~Gi~-------------------------------------- 1038 (1992)
...+..++..+... +.++|||+......+.+...|...|+.
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 34445555555444 569999999999999998888654433
Q ss_pred -EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChh--------hHHHHHHhhcccC
Q 000160 1039 -YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPA--------MDQQAQDRCHRIG 1109 (1992)
Q Consensus 1039 -y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa--------~d~QA~gRahRIG 1109 (1992)
+..++|+++..+|..+++.|.. +.+.| |++|.+++.|||+.+.++||.++..||+. ...|+.||++|.|
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~~-G~ikV-LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQE-GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHHH-TCCCE-EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred CeeeecCCCCHHHHHHHHHHHhC-CCCeE-EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 6889999999999999999986 67777 68889999999999999999888877665 4889999999999
Q ss_pred CcCcEEEEEEEeCCCH
Q 000160 1110 QTREVHIYRLISESTI 1125 (1992)
Q Consensus 1110 QTRdV~VYRLIse~TI 1125 (1992)
+....++|.++.....
T Consensus 584 ~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 584 LDDRGIVIMMIDEKME 599 (1108)
T ss_dssp SCSSEEEEEEECCCCC
T ss_pred CCCceEEEEEecCCcC
Confidence 9999999999988743
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.77 E-value=3.2e-18 Score=225.51 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=100.6
Q ss_pred hhCCCeEEEEeCchHHHHHHHHHHHHc------------------------------CCcEEEecCCCCHHHHHHHHHHH
Q 000160 1009 KSDGHRALIFTQMTKMLDILEEFISLY------------------------------GYTYMRLDGSTQPEERQTLMQRF 1058 (1992)
Q Consensus 1009 ks~G~KVLIFSQ~t~mLDILe~~L~~~------------------------------Gi~y~RLDGsts~eqRq~lIerF 1058 (1992)
...+.++|||+...+....+...|... ++.+..++|+++.++|..+.+.|
T Consensus 239 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 239 VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 346889999999999888888777542 23466799999999999999999
Q ss_pred hcCCCceEEEEeccccccccCCccCCEEEE----ec---CCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHH
Q 000160 1059 NTNPKIFLFILSTRSGGVGINLVGADTVIF----YD---SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1126 (1992)
Q Consensus 1059 N~D~~ifVfLLSTrAGG~GLNLT~AdtVIf----yD---~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1126 (1992)
.. +.+.| |++|.+++.|||+.+.+.||. || .++++....|+.||++|.|+.++-++|+|++...++
T Consensus 319 ~~-g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 319 RR-GNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp HT-TSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred HC-CCCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 86 57777 689999999999999999998 77 789999999999999999999999999999987744
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.77 E-value=1.1e-17 Score=220.90 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=96.5
Q ss_pred hhCCCeEEEEeCchHHHHHHHHHHHHcC------------------------------------CcEEEecCCCCHHHHH
Q 000160 1009 KSDGHRALIFTQMTKMLDILEEFISLYG------------------------------------YTYMRLDGSTQPEERQ 1052 (1992)
Q Consensus 1009 ks~G~KVLIFSQ~t~mLDILe~~L~~~G------------------------------------i~y~RLDGsts~eqRq 1052 (1992)
...+.++|||+........+...|.... +.+..++|+++.++|+
T Consensus 249 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~ 328 (715)
T 2va8_A 249 LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRD 328 (715)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred HhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHH
Confidence 3467899999999999998888886532 3478899999999999
Q ss_pred HHHHHHhcCCCceEEEEeccccccccCCccCCEEEE----ec-------CCCChhhHHHHHHhhcccCCcCcEEEEEEEe
Q 000160 1053 TLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF----YD-------SDWNPAMDQQAQDRCHRIGQTREVHIYRLIS 1121 (1992)
Q Consensus 1053 ~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf----yD-------~dWNPa~d~QA~gRahRIGQTRdV~VYRLIs 1121 (1992)
.+.+.|.. +.+.| |++|.+++.|||+.+.+.||. || .+++++...|+.|||+|.|+.++-++|+|++
T Consensus 329 ~v~~~f~~-g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 329 LIEEGFRQ-RKIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp HHHHHHHT-TCSCE-EEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred HHHHHHHc-CCCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 99999985 56777 688999999999999999998 99 7999999999999999999999999999998
Q ss_pred CCC
Q 000160 1122 EST 1124 (1992)
Q Consensus 1122 e~T 1124 (1992)
...
T Consensus 407 ~~~ 409 (715)
T 2va8_A 407 DKE 409 (715)
T ss_dssp CGG
T ss_pred Cch
Confidence 765
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.77 E-value=8.2e-18 Score=222.31 Aligned_cols=116 Identities=17% Similarity=0.081 Sum_probs=101.3
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHc---------------------------------CCcEEEecCCCCHHHHHHHHH
Q 000160 1010 SDGHRALIFTQMTKMLDILEEFISLY---------------------------------GYTYMRLDGSTQPEERQTLMQ 1056 (1992)
Q Consensus 1010 s~G~KVLIFSQ~t~mLDILe~~L~~~---------------------------------Gi~y~RLDGsts~eqRq~lIe 1056 (1992)
..++++|||+........+...|... .+.+..++|+++.++|..+++
T Consensus 235 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 235 RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 46789999999999988888887643 124888999999999999999
Q ss_pred HHhcCCCceEEEEeccccccccCCccCCEEEE----ec----CCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHH
Q 000160 1057 RFNTNPKIFLFILSTRSGGVGINLVGADTVIF----YD----SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEE 1127 (1992)
Q Consensus 1057 rFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf----yD----~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE 1127 (1992)
.|.. +.+.| |++|.+.+.|||+.+.+.||. || .++++....|++|||+|.|+.+.-.+|+|++...++.
T Consensus 315 ~f~~-g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 315 NFRK-GIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHHT-TSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHHC-CCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 9985 67777 688899999999999999998 88 6899999999999999999999999999999887543
No 42
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.74 E-value=3.9e-18 Score=200.41 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=125.0
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--C
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--A 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P--~ 529 (1992)
.+|++||..++.+++. +.++||++.||+|||+++++++..+.. .+ .+++|||||+ +++.||..+|++|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~-~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLE-NY-EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHH-HC-SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHH-cC-CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 5899999999998876 257899999999999999888776544 22 3589999998 788999999999964 4
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-ccceEE
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRI 608 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-~a~rRL 608 (1992)
..+..++|...... ......+|+|+||+.+.+....+ ...|++||+||||++.+. .....+..+ +..++|
T Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 186 AMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEE
T ss_pred ceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEE
Confidence 56666655542211 11246789999999988764432 246899999999999853 334444555 678999
Q ss_pred EEeccCCCCChHHHHHHHHHhCC
Q 000160 609 LLTGTPLQNDLMELWSLMHFLMP 631 (1992)
Q Consensus 609 LLTGTPLQNsL~ELwSLL~FL~P 631 (1992)
+|||||. |...+++.++.+++|
T Consensus 257 ~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 257 GLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp EECSSCC-TTSTTHHHHHHHHCE
T ss_pred EEeCCCC-CcchHHHHHHHhcCC
Confidence 9999996 556889999998876
No 43
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.73 E-value=3e-16 Score=213.17 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=109.7
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCC--------------------------------------
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGY-------------------------------------- 1037 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi-------------------------------------- 1037 (1992)
.++..|..+|... ...++|||+......+.+...|...|+
T Consensus 322 ~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 3555666666542 457999999999999999988876665
Q ss_pred -cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCC---------ChhhHHHHHHhhcc
Q 000160 1038 -TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDW---------NPAMDQQAQDRCHR 1107 (1992)
Q Consensus 1038 -~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dW---------NPa~d~QA~gRahR 1107 (1992)
.+..++|+++..+|+.+++.|.. +.+.| |++|.+.+.|||+.+ .+||+++..+ ++....|+.||++|
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~-G~~kV-LvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSK-GFIKV-LFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHT-TCCSE-EEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHC-CCCcE-EEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccccc
Confidence 46899999999999999999986 56776 788999999999999 7888766554 99999999999999
Q ss_pred cCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1108 IGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1108 IGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
.|+...-++|.+...+..+..+++.
T Consensus 477 ~G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 477 RGLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp TTTCSSEEEEEECCSSCCCHHHHHH
T ss_pred CCCCcceEEEEecCCCcchHHHHHH
Confidence 9999999999999777777666654
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.72 E-value=3.3e-16 Score=214.45 Aligned_cols=157 Identities=14% Similarity=0.264 Sum_probs=111.9
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC-CCCe
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC-PAFK 531 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~-P~lK 531 (1992)
.|+++|..++..++. +.+.|+.-.+|.|||+..+..+.+.. ...+.+|||+|+ .|+.|+...|++++ .+++
T Consensus 78 ~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~ 150 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKVK 150 (1104)
T ss_dssp CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCCCe
Confidence 589999999987754 67899999999999996655555444 223578999999 68899999999976 4679
Q ss_pred EEEEeCchhH--HHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCC-------------hhhH-H
Q 000160 532 ILTYFGSAKE--RKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN-------------WKSQ-R 595 (1992)
Q Consensus 532 VL~Y~Gs~ke--Rk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN-------------~~Sq-~ 595 (1992)
+..++|.... +...... ...+.++|+|+|...+......+....+++|||||||.+.. +... .
T Consensus 151 v~~l~Gg~~~~er~~~~~~-l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i 229 (1104)
T 4ddu_A 151 IFGFYSSMKKEEKEKFEKS-FEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 229 (1104)
T ss_dssp EEEECTTCCTTHHHHHHHH-HHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHH-HhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHH
Confidence 9999986643 1111111 11235889999999997776666667899999999998643 2222 2
Q ss_pred HHHHHhc------------ccceEEEEeccCCCCC
Q 000160 596 WQTLLNF------------NSKRRILLTGTPLQND 618 (1992)
Q Consensus 596 ~qaLl~L------------~a~rRLLLTGTPLQNs 618 (1992)
...+..+ ...+.+++||||....
T Consensus 230 ~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~ 264 (1104)
T 4ddu_A 230 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRG 264 (1104)
T ss_dssp HHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCS
T ss_pred HHHHHhcccchhhhhhccCCCceEEEEcCCCCcHH
Confidence 2222222 3457899999986554
No 45
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.71 E-value=3.8e-16 Score=211.55 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=108.6
Q ss_pred CCChHHHHHHHHHHHHHHcc----------CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHH
Q 000160 453 FPLREYQHIGLDWLVTMYEK----------RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWET 521 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~----------~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~ 521 (1992)
..||+||..++.+++..... +.+||+.+.+|.|||++++.++ .+....+...++|||||+ .|..||..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 45999999999999875432 3689999999999999986665 444433444689999995 78999999
Q ss_pred HHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhh---h-hccCccEEEEcCccccCChhhHHHH
Q 000160 522 EFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV---F-KRKKWKYLILDEAHLIKNWKSQRWQ 597 (1992)
Q Consensus 522 EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~---f-~r~~W~~LILDEAH~IKN~~Sq~~q 597 (1992)
+|.+|.++. ++.|.... ..... . .....+|+||||+.+...... + .-..+.+||+||||+... ...++
T Consensus 349 ~f~~f~~~~---v~~~~s~~-~l~~~-L-~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~~~ 420 (1038)
T 2w00_A 349 EYQRFSPDS---VNGSENTA-GLKRN-L-DKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEAQK 420 (1038)
T ss_dssp HHHTTSTTC---SSSSCCCH-HHHHH-H-HCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHHHH
T ss_pred HHHHhcccc---cccccCHH-HHHHH-h-cCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHHHH
Confidence 999998752 11221111 11111 1 123578999999999764321 1 122689999999999753 22344
Q ss_pred HH-HhcccceEEEEeccCCCC
Q 000160 598 TL-LNFNSKRRILLTGTPLQN 617 (1992)
Q Consensus 598 aL-l~L~a~rRLLLTGTPLQN 617 (1992)
.+ ..+...++++|||||...
T Consensus 421 ~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 421 NLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHCSSEEEEEEESSCCCS
T ss_pred HHHHhCCcccEEEEeCCcccc
Confidence 44 445667999999999864
No 46
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.67 E-value=2e-16 Score=182.04 Aligned_cols=142 Identities=25% Similarity=0.326 Sum_probs=112.2
Q ss_pred CCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC
Q 000160 451 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA 529 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~ 529 (1992)
....|++||..++.+++. +.++||+..||+|||+++++++..+ .+++|||||+ +++.||..+|.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 457899999999997654 3469999999999999998887654 3689999999 7889999999995 5
Q ss_pred Ce-EEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEE
Q 000160 530 FK-ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI 608 (1992)
Q Consensus 530 lK-VL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRL 608 (1992)
.+ +..+.|..+. ..+|+|+||+.+......+. ..|++|||||||++.+... .+.+..++..++|
T Consensus 158 ~~~v~~~~g~~~~------------~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~~--~~i~~~~~~~~~l 222 (237)
T 2fz4_A 158 EEYVGEFSGRIKE------------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESY--VQIAQMSIAPFRL 222 (237)
T ss_dssp GGGEEEESSSCBC------------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTTH--HHHHHTCCCSEEE
T ss_pred CCeEEEEeCCCCC------------cCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChHH--HHHHHhccCCEEE
Confidence 67 8888886532 35799999999987766543 4699999999999987542 2345556888999
Q ss_pred EEeccCCCCCh
Q 000160 609 LLTGTPLQNDL 619 (1992)
Q Consensus 609 LLTGTPLQNsL 619 (1992)
+|||||.+++-
T Consensus 223 ~LSATp~r~D~ 233 (237)
T 2fz4_A 223 GLTATFEREDG 233 (237)
T ss_dssp EEEESCC----
T ss_pred EEecCCCCCCC
Confidence 99999998753
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.64 E-value=3.1e-15 Score=204.81 Aligned_cols=132 Identities=18% Similarity=0.243 Sum_probs=95.6
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC--C
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA--F 530 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~--l 530 (1992)
++ ++|..++.-++. +.+.|+.-.+|.|||+..+.++.++.. ..+.+|||+|+ .|+.|+...|+++++. +
T Consensus 57 ~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 57 PR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp CC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 37 999999987764 678999999999999855555544432 23578999999 5788899999998864 4
Q ss_pred ----eEEEEeCchhHHHH--hhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHH
Q 000160 531 ----KILTYFGSAKERKF--KRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQT 598 (1992)
Q Consensus 531 ----KVL~Y~Gs~keRk~--kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qa 598 (1992)
++..++|....... ..... ...+|+|+|...+......|. .+++|||||||++-++.......
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l---~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i 197 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNL---RNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKL 197 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSG---GGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHH
T ss_pred CccceEEEEeCCCChhhHHHHHhhc---cCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHH
Confidence 78888886543221 11111 127899999999987655443 68899999999987754433333
No 48
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.62 E-value=1.7e-15 Score=164.18 Aligned_cols=131 Identities=19% Similarity=0.302 Sum_probs=115.0
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|+..|..+|... .+.++|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~v-lv~T~~ 94 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR-GEYRY-LVATDV 94 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECGG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEECCh
Confidence 467999999999874 56799999999999999999999999999999999999999999999986 56666 678899
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1132 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkr 1132 (1992)
++.|||++.+++||+||++|||....|++||++|.||+..+ |.|++.. |..+++.
T Consensus 95 ~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~ 149 (163)
T 2hjv_A 95 AARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLAD 149 (163)
T ss_dssp GTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHH
T ss_pred hhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHH
Confidence 99999999999999999999999999999999999987654 5566654 4445444
No 49
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.62 E-value=3.1e-15 Score=163.88 Aligned_cols=123 Identities=19% Similarity=0.238 Sum_probs=110.9
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|+..|..+|+.. .+.++|||++....++.|...|...|+.+..++|.++..+|..++++|+. +.+.| |++|.+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~v-LvaT~~ 90 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRI-LVATNL 90 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEESSC
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC-CCCcE-EEECCc
Confidence 467999999999875 56799999999999999999999999999999999999999999999985 66776 678899
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeC
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1122 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1122 (1992)
++.|||++.+++||+||++||+....|++||++|.||+..+. .|++.
T Consensus 91 ~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~ 137 (172)
T 1t5i_A 91 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSD 137 (172)
T ss_dssp CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE--EEECS
T ss_pred hhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE--EEEcC
Confidence 999999999999999999999999999999999999876544 45554
No 50
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=168.65 Aligned_cols=125 Identities=21% Similarity=0.313 Sum_probs=97.9
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
.+.|+..|..+|.... .+.|+|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+
T Consensus 29 ~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~-g~~~v-LvaT~~ 105 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPI-LVATAV 105 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH-TSSSE-EEEEC-
T ss_pred cHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEcCh
Confidence 4679999999998753 57899999999999999999999999999999999999999999999986 56666 678899
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
++.|||++.+++||+||++||+....|++||++|.||+. .+|.|++..
T Consensus 106 ~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 106 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp -----CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 999999999999999999999999999999999999764 455566654
No 51
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=163.56 Aligned_cols=123 Identities=22% Similarity=0.282 Sum_probs=106.5
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|+..|..+|.. .+.++|||++....++.|..+|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~v-LvaT~~ 113 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE-GKKDV-LVATDV 113 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH-TSCSE-EEECHH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCEE-EEEcCc
Confidence 35688888887764 46699999999999999999999999999999999999999999999986 46666 678899
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
++.|||++.+++||+||++||+....|++||++|.||+..+ +.|++..
T Consensus 114 ~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 114 ASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 99999999999999999999999999999999999997644 4566654
No 52
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.56 E-value=9.4e-15 Score=158.49 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=107.8
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+..|..+|... .+.++|||++....++.|...|...|+.+..++|+++..+|+.++++|+. +.+.| |++|.+++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~ 91 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRI-LISTDLLA 91 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEEEGGGT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc-CCCEE-EEEcChhh
Confidence 3999999999875 56799999999999999999999999999999999999999999999985 56666 57889999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCH
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1125 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1125 (1992)
.|+|++.+++||+||++||+....|++||++|.|+... +|.|++.+.+
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 99999999999999999999999999999999997664 4567777654
No 53
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.54 E-value=2.6e-14 Score=158.96 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=112.8
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHh---cCCCCcEEEEecC-CcHHHHHHHHHHHCCC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACE---KGIWGPHLIVVPT-SVMLNWETEFLKWCPA 529 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~e---kg~~GP~LIVVPt-SLL~NWe~EfkKw~P~ 529 (1992)
.|++||..++.++.. +.++|+...+|.|||++.+..+...... .+..+.+|||||+ .++.||..+++++++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 589999999998765 5789999999999999866555443221 1234579999999 7889999999999999
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCC--hhhHHHHHHHhcc-c
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFN-S 604 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN--~~Sq~~qaLl~L~-a 604 (1992)
+++..++|..........-. ..++|+|+|++.+..... .+.-..+++||+||||++.+ +.......+..+. .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALL---RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHH---HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ceEEEEECCCChHHHHHHhh---CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 99999988754332222111 257899999998765432 23345689999999999843 3444444444454 4
Q ss_pred ceEEEEeccCC
Q 000160 605 KRRILLTGTPL 615 (1992)
Q Consensus 605 ~rRLLLTGTPL 615 (1992)
.+.+++||||-
T Consensus 176 ~~~i~~SAT~~ 186 (207)
T 2gxq_A 176 RQTLLFSATLP 186 (207)
T ss_dssp SEEEEECSSCC
T ss_pred CeEEEEEEecC
Confidence 57899999984
No 54
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=160.57 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=93.7
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhc---CCCCcEEEEecC-CcHHH-HHHHHHHH
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK---GIWGPHLIVVPT-SVMLN-WETEFLKW 526 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ek---g~~GP~LIVVPt-SLL~N-We~EfkKw 526 (1992)
...|++||..++.+++. +.++|+...+|.|||++++.++..+.... +..+++|||||+ .++.| |..++.+|
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45799999999998764 57899999999999999988877654331 235689999999 57788 99999999
Q ss_pred CC-CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhh--------hhccCccEEEEcCccccCC
Q 000160 527 CP-AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--------FKRKKWKYLILDEAHLIKN 590 (1992)
Q Consensus 527 ~P-~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~--------f~r~~W~~LILDEAH~IKN 590 (1992)
.+ ++++..++|............ ..++|+|+||+.+...... +....|++|||||||++..
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEVV---KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHHH---HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred hccCceEEEEeCCcccchhHHhhc---cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 76 588888888654321111100 2468999999998765432 2335789999999999954
No 55
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=5.8e-14 Score=153.72 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=106.0
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 996 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 996 gKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.|+..|..+|..+ .+.++|||++...+++.|...|...|+.+..++|.++..+|+.+++.|+. +.+.| |++|.+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~-g~~~v-LvaT~~~~ 95 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD-GKEKV-LITTNVCA 95 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT-TSCSE-EEECCSCC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEecchh
Confidence 4899999888765 46799999999999999999999999999999999999999999999985 56666 67889999
Q ss_pred cccCCccCCEEEEecCC------CChhhHHHHHHhhcccCCcCcEEEEEEEeCCC
Q 000160 1076 VGINLVGADTVIFYDSD------WNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1124 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~d------WNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1124 (1992)
.|||++.+++||+||++ |++....|++||++|.|+. -.+|.|++.+.
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 99999999999999999 5668889999999999954 56777888765
No 56
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.52 E-value=3.8e-14 Score=159.70 Aligned_cols=161 Identities=17% Similarity=0.214 Sum_probs=113.2
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC---CC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC---PA 529 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~---P~ 529 (1992)
.|++||..++..+.. +.++|++..+|.|||+..+..+...........++|||||+ .++.||..++++|+ |+
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 389999999998765 57899999999999988876666543322223479999998 78899999999987 57
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCC---hhhHHHHHHHhcc-
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN---WKSQRWQTLLNFN- 603 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN---~~Sq~~qaLl~L~- 603 (1992)
+++..++|.......... + ..+..+|+|+|++.+..... .+....+++||+||||++-. +.......+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~~~-~-~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 189 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEV-L-KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189 (220)
T ss_dssp CCEEEESCCSCHHHHHHH-H-HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceEEEEeCCCChHHHHHH-H-hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC
Confidence 899999986543322211 0 11346899999998865422 23335689999999999854 2222333333343
Q ss_pred cceEEEEeccCCCCChHH
Q 000160 604 SKRRILLTGTPLQNDLME 621 (1992)
Q Consensus 604 a~rRLLLTGTPLQNsL~E 621 (1992)
..+++++||||-. .+.+
T Consensus 190 ~~~~i~~SAT~~~-~~~~ 206 (220)
T 1t6n_A 190 EKQVMMFSATLSK-EIRP 206 (220)
T ss_dssp SSEEEEEESCCCT-TTHH
T ss_pred cCeEEEEEeecCH-HHHH
Confidence 4678999999854 3444
No 57
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.52 E-value=1.3e-13 Score=156.11 Aligned_cols=125 Identities=20% Similarity=0.271 Sum_probs=111.7
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000160 993 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1072 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTr 1072 (1992)
....|+..|..++... .+.++|||++.....+.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~v-lvaT~ 89 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ-GEVRV-LVATD 89 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS-SSCCE-EEECT
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC-CCCeE-EEecC
Confidence 4578999999999854 57799999999999999999999999999999999999999999999986 56666 67889
Q ss_pred ccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1073 SGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1073 AGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
+++.|||+.++++||+||++|++....|++||++|.|+.. .+|.|++..
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 9999999999999999999999999999999999999764 566777765
No 58
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.51 E-value=1.2e-13 Score=172.31 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=85.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCE------
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADT------ 1085 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~Adt------ 1085 (1992)
+.++|||+......+.+...|...|+....++|. +|+.++++|.. +.+.| |++|.+.+.|||+. .++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~-g~~~v-LVaT~v~e~GiDip-~~~VI~~g~ 243 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKS-EKWDF-VITTDISEMGANFK-ADRVIDPRK 243 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHH-SCCSE-EEECGGGGTSCCCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcC-CCCeE-EEECchHHcCcccC-CcEEEecCc
Confidence 5589999999999999999999999999999997 58899999986 56666 68899999999998 555
Q ss_pred -----------EEEecCCCChhhHHHHHHhhcccCCc-CcEEEE
Q 000160 1086 -----------VIFYDSDWNPAMDQQAQDRCHRIGQT-REVHIY 1117 (1992)
Q Consensus 1086 -----------VIfyD~dWNPa~d~QA~gRahRIGQT-RdV~VY 1117 (1992)
||++|.+.++....|+.||++|.|.. ..+.+|
T Consensus 244 ~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 244 TIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 57789999999999999999999954 344444
No 59
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.23 E-value=2.4e-15 Score=164.11 Aligned_cols=123 Identities=17% Similarity=0.280 Sum_probs=109.3
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
..|+..|..+|+.. .+.++|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.++
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~-g~~~v-LvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE-GRVNV-LVATDVA 90 (170)
Confidence 56888898888763 56799999999999999999999999999999999999999999999985 55655 6888999
Q ss_pred ccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCC
Q 000160 1075 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1123 (1992)
Q Consensus 1075 G~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1123 (1992)
+.|||++.+++||+||++||+....|++||++|.||+..+.+ |+...
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~--~~~~~ 137 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS--LVEAH 137 (170)
Confidence 999999999999999999999999999999999999776644 44443
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.48 E-value=1.9e-13 Score=155.65 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=112.2
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC---CC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC---PA 529 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~---P~ 529 (1992)
.|++||..++..+.. +.+.|+...+|.|||++.+..+.......+..+.+|||||+ .++.||..+++++. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 489999999998754 67899999999999998554443332223344689999998 78999999999986 47
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCC---hhhHHHHHHHhcc-
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN---WKSQRWQTLLNFN- 603 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN---~~Sq~~qaLl~L~- 603 (1992)
+++..++|.......... + ...+|+|+|++.+..... .+....+++||+||||++-+ +.......+..+.
T Consensus 122 ~~~~~~~g~~~~~~~~~~-~---~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 197 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTR-L---KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA 197 (230)
T ss_dssp CCEEEECTTSCHHHHHHH-T---TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS
T ss_pred ceEEEEeCCCCHHHHHHh-c---cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC
Confidence 899999987544332221 1 357899999998875422 23334688999999999943 4455555555565
Q ss_pred cceEEEEeccCC
Q 000160 604 SKRRILLTGTPL 615 (1992)
Q Consensus 604 a~rRLLLTGTPL 615 (1992)
..+++++|||+-
T Consensus 198 ~~~~l~lSAT~~ 209 (230)
T 2oxc_A 198 SKQMLAVSATYP 209 (230)
T ss_dssp SCEEEEEESCCC
T ss_pred CCeEEEEEeccC
Confidence 557899999963
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.48 E-value=1.9e-13 Score=154.30 Aligned_cols=160 Identities=16% Similarity=0.085 Sum_probs=114.2
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC----
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP---- 528 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P---- 528 (1992)
.|++||..++.++.. +.++|+...+|.|||+..+..+.......+..+.+|||||+ .++.||..++++++.
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 489999999998875 57899999999999998655554433333334579999999 688999999998875
Q ss_pred --CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCC--hhhHHHHHHHhc
Q 000160 529 --AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNF 602 (1992)
Q Consensus 529 --~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN--~~Sq~~qaLl~L 602 (1992)
++++..++|........... ...++|+|+|++.+..... .+.-..+.+||+||||++.+ +.......+..+
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~---~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKL---NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCC---SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred ccceEEEEEeCCCCHHHHHHHc---CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 57788888876544332211 2467899999998875322 22334689999999999864 334444455555
Q ss_pred c-cceEEEEeccCCCCChHH
Q 000160 603 N-SKRRILLTGTPLQNDLME 621 (1992)
Q Consensus 603 ~-a~rRLLLTGTPLQNsL~E 621 (1992)
. ..+++++|||+ .+.+.+
T Consensus 179 ~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 179 PKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp CTTCEEEEEESCC-CGGGHH
T ss_pred CcccEEEEEecCC-CHHHHH
Confidence 4 45789999997 444444
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.47 E-value=3.7e-13 Score=149.79 Aligned_cols=155 Identities=18% Similarity=0.140 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC---C
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP---A 529 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P---~ 529 (1992)
.|++||..++..+.. +.+.|+...+|.|||+..+..+...........++|||||+ .++.||...+.+++. +
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 589999999998764 57899999999999987765554433222333579999998 678899999998874 6
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCC--hhhHHHHHHHhcc-c
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFN-S 604 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN--~~Sq~~qaLl~L~-a 604 (1992)
+++..++|........... ...++|+|+|++.+..... .+....+.+||+||||++.. +.......+..+. .
T Consensus 101 ~~~~~~~g~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRL---DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT---TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCccHHHHHHhc---CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 7888888876554333221 2467899999998865432 22334689999999998865 3333344444454 5
Q ss_pred ceEEEEeccCC
Q 000160 605 KRRILLTGTPL 615 (1992)
Q Consensus 605 ~rRLLLTGTPL 615 (1992)
.+++++|||+-
T Consensus 178 ~~~l~~SAT~~ 188 (206)
T 1vec_A 178 RQILLYSATFP 188 (206)
T ss_dssp CEEEEEESCCC
T ss_pred ceEEEEEeeCC
Confidence 67899999984
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.46 E-value=2.3e-13 Score=155.09 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=111.6
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhc----CCCCcEEEEecC-CcHHHHHHHHHHHCC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK----GIWGPHLIVVPT-SVMLNWETEFLKWCP 528 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ek----g~~GP~LIVVPt-SLL~NWe~EfkKw~P 528 (1992)
.|++||..++.++.. +.+.|++..+|.|||++.+..+....... .....+|||||+ .++.||..+++++++
T Consensus 47 ~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 479999999998864 67899999999999998766555433221 223468999999 788999999999986
Q ss_pred C--CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh---hhhccCccEEEEcCccccCCh--hhHHHHHHHh
Q 000160 529 A--FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK---VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLN 601 (1992)
Q Consensus 529 ~--lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~---~f~r~~W~~LILDEAH~IKN~--~Sq~~qaLl~ 601 (1992)
. +++..++|.......... + ..++|+|+|++.+..... .+....|++||+||||++.+. .......+..
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~-~---~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAER-I---NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHH-H---TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred CCCeeEEEEECCCCHHHHHHh-C---CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 4 788888887644322221 1 357899999999866432 233457899999999998653 4444455555
Q ss_pred cc-cceEEEEeccCC
Q 000160 602 FN-SKRRILLTGTPL 615 (1992)
Q Consensus 602 L~-a~rRLLLTGTPL 615 (1992)
+. ..++++||||+-
T Consensus 199 ~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 199 LPKKRQTLLFSATQT 213 (236)
T ss_dssp SCTTSEEEEEESSCC
T ss_pred CCCCCeEEEEEeeCC
Confidence 54 456899999974
No 64
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.45 E-value=4.1e-13 Score=167.90 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=77.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE--
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF-- 1088 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf-- 1088 (1992)
.+.++|||+......+.+...|...|+....++| ++|..++++|.+ +.+.| |++|.+.+.|||+. +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~-g~~~v-LVaT~v~e~GiDip-v~~VI~~g 248 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ-KKPDF-ILATDIAEMGANLC-VERVLDCR 248 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC---------CCCSE-EEESSSTTCCTTCC-CSEEEECC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC-CCceE-EEECChhheeeccC-ceEEEeCC
Confidence 3679999999999999999999999999999999 468999999986 56666 68899999999999 999986
Q ss_pred -----------------ecCCCChhhHHHHHHhhcccCC
Q 000160 1089 -----------------YDSDWNPAMDQQAQDRCHRIGQ 1110 (1992)
Q Consensus 1089 -----------------yD~dWNPa~d~QA~gRahRIGQ 1110 (1992)
||.+.++....|+.||++|.|.
T Consensus 249 ~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 249 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 8999999999999999999853
No 65
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.44 E-value=4e-13 Score=155.44 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=113.4
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--CC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--AF 530 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P--~l 530 (1992)
.|++||..++..+.. +.+.|+...+|.|||++.+..+.......+....+|||||+ .++.||..+|++++. ++
T Consensus 65 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 589999999998764 67899999999999998766555444444444579999999 678899999999875 57
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhh---hhccCccEEEEcCccccCC--hhhHHHHHHHhcc-c
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV---FKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFN-S 604 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~---f~r~~W~~LILDEAH~IKN--~~Sq~~qaLl~L~-a 604 (1992)
++..++|........... ...++|+|+|++.+...... +.-..+++||+||||++.+ +.......+..+. .
T Consensus 141 ~~~~~~g~~~~~~~~~~~---~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 217 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLAL---AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 217 (249)
T ss_dssp CEEEECTTSCHHHHHHHH---HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSS
T ss_pred eEEEEECCCChHHHHHHh---cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCC
Confidence 888888865433222211 13578999999998764322 3334689999999998865 3444445555553 5
Q ss_pred ceEEEEeccCC
Q 000160 605 KRRILLTGTPL 615 (1992)
Q Consensus 605 ~rRLLLTGTPL 615 (1992)
.+++++|||+-
T Consensus 218 ~~~l~~SAT~~ 228 (249)
T 3ber_A 218 RKTFLFSATMT 228 (249)
T ss_dssp SEEEEEESSCC
T ss_pred CeEEEEeccCC
Confidence 67899999985
No 66
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.44 E-value=3.6e-13 Score=168.88 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=84.2
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEec-
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD- 1090 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD- 1090 (1992)
+.++|||++.....+.|...|...|+.+..|+|.+ |+.++++|.. +.+.| |++|.+.+.|||+.. ++||.||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~-g~~~v-LVaT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKL-TDWDF-VVTTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGS-SCCSE-EEECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhcc-CCceE-EEECCHHHhCcCCCC-CEEEECCC
Confidence 45899999999999999999999999999999975 4678999975 56666 689999999999999 9999988
Q ss_pred -------------------CCCChhhHHHHHHhhcccCCcC
Q 000160 1091 -------------------SDWNPAMDQQAQDRCHRIGQTR 1112 (1992)
Q Consensus 1091 -------------------~dWNPa~d~QA~gRahRIGQTR 1112 (1992)
.+.++....|++||++|.|...
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8899999999999999999733
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.43 E-value=6.4e-13 Score=149.94 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=105.8
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--CC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--AF 530 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P--~l 530 (1992)
.|++||..++.++.. +.++|+...+|.|||++.+..+..........+.+|||||+ .++.||..+++++++ ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 489999999998764 57899999999999998543333322223344589999999 678999999999975 57
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCC--hhhHHHHHHHhcc-cc
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFN-SK 605 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN--~~Sq~~qaLl~L~-a~ 605 (1992)
++..++|......... .+ ...+|+|+|++.+..... .+...++.+||+||||++.+ +.......+..+. ..
T Consensus 112 ~~~~~~g~~~~~~~~~-~~---~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~ 187 (224)
T 1qde_A 112 KVHACIGGTSFVEDAE-GL---RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187 (224)
T ss_dssp CEEEECC-----------C---TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCcchHHHHh-cC---CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccC
Confidence 8888888654332211 11 237899999998865422 22334689999999999854 3344444444443 45
Q ss_pred eEEEEeccCC
Q 000160 606 RRILLTGTPL 615 (1992)
Q Consensus 606 rRLLLTGTPL 615 (1992)
++++||||+-
T Consensus 188 ~~i~lSAT~~ 197 (224)
T 1qde_A 188 QVVLLSATMP 197 (224)
T ss_dssp EEEEEESSCC
T ss_pred eEEEEEeecC
Confidence 6899999985
No 68
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.43 E-value=3.2e-13 Score=169.74 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=88.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE---
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF--- 1088 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf--- 1088 (1992)
+.++|||+......+.|...|...|+.+..|+|. +|+.++++|.. +.+.| |++|.+++.|||+.. ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~-g~~~i-LVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN-GDWDF-VITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS-CCCSE-EEESSCC---CCCSC-SEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC-CCceE-EEECChHHhCeecCC-CEEEECCc
Confidence 5689999999999999999999999999999994 67889999975 56666 689999999999998 99998
Q ss_pred -----------------ecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHH
Q 000160 1089 -----------------YDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1126 (1992)
Q Consensus 1089 -----------------yD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1126 (1992)
||.+.++....|++||++|.|.. +-..|.|++....+
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~~~~ 316 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGATSED 316 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCCCCC
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEcccccc
Confidence 88999999999999999999963 33455677765433
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.41 E-value=6.5e-13 Score=173.75 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=84.6
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEE--
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF-- 1088 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIf-- 1088 (1992)
.+.++|||+......+.|...|...|+....|+|. +|+.++++|.. +++.| |++|.+.+.|||+. +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~-g~~~V-LVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN-GDWDF-VITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT-CCCSE-EEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC-CCceE-EEECchhhcceeeC-CcEEEECC
Confidence 46799999999999999999999999999999993 79999999985 56666 68899999999999 999997
Q ss_pred ------------------ecCCCChhhHHHHHHhhccc-CCcCc
Q 000160 1089 ------------------YDSDWNPAMDQQAQDRCHRI-GQTRE 1113 (1992)
Q Consensus 1089 ------------------yD~dWNPa~d~QA~gRahRI-GQTRd 1113 (1992)
||.+.++....|++||++|. |+.-.
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ 525 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD 525 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE
Confidence 56788889999999999999 44433
No 70
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.39 E-value=1.1e-12 Score=150.35 Aligned_cols=156 Identities=18% Similarity=0.159 Sum_probs=107.6
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--CC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--AF 530 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P--~l 530 (1992)
.|++||..++..++. +.++|+...+|.|||+..+..+............+|||||+ .++.||..++++++. ++
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 489999999998764 57899999999999988655554433222234589999999 688999999999986 46
Q ss_pred eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCcccc--CChhhHHHHHHHhcc-cc
Q 000160 531 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLI--KNWKSQRWQTLLNFN-SK 605 (1992)
Q Consensus 531 KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~I--KN~~Sq~~qaLl~L~-a~ 605 (1992)
++..++|......... ....+.++|+|+|++.+..... .+....+.+||+||||++ .++.......+..++ ..
T Consensus 128 ~~~~~~g~~~~~~~~~--~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQ--KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp CEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEECCCchHHHHH--HHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 7777777654332211 1222347899999988765422 233346899999999988 445555666666664 45
Q ss_pred eEEEEeccCC
Q 000160 606 RRILLTGTPL 615 (1992)
Q Consensus 606 rRLLLTGTPL 615 (1992)
+.+++|||+-
T Consensus 206 ~~i~~SAT~~ 215 (237)
T 3bor_A 206 QVVLLSATMP 215 (237)
T ss_dssp EEEEECSSCC
T ss_pred eEEEEEEecC
Confidence 6799999985
No 71
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.38 E-value=2.4e-12 Score=153.28 Aligned_cols=125 Identities=21% Similarity=0.281 Sum_probs=109.1
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|+..|..+|.... +.++|||+......+.|...|...|+.+..++|.++..+|+.+++.|.. +.+.| |++|.+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~-g~~~v-LVaT~v 87 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ-GEVRV-LVATDV 87 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH-TSCCE-EEECST
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc-CCceE-EEEech
Confidence 4679999999998763 7899999999999999999999999999999999999999999999986 56666 688899
Q ss_pred cccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCC
Q 000160 1074 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1124 (1992)
Q Consensus 1074 GG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1124 (1992)
++.|||+.++++||+||++|++....|++||++|.|+. -.+|.|++...
T Consensus 88 a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e 136 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 136 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH
Confidence 99999999999999999999999999999999999976 46677887763
No 72
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.37 E-value=2e-12 Score=148.98 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=109.7
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcC---------CCCcEEEEecC-CcHHHHHHHH
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG---------IWGPHLIVVPT-SVMLNWETEF 523 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg---------~~GP~LIVVPt-SLL~NWe~Ef 523 (1992)
.|++||..++.++.. +.+.|+...+|.|||+..+..+.......+ ..+.+|||||+ .++.||..++
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 589999999998765 578999999999999987665554433221 22479999999 7889999999
Q ss_pred HHHCC--CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhh--hhccCccEEEEcCccccCC--hhhHHHH
Q 000160 524 LKWCP--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKN--WKSQRWQ 597 (1992)
Q Consensus 524 kKw~P--~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~--f~r~~W~~LILDEAH~IKN--~~Sq~~q 597 (1992)
++|+. ++++..++|........+.- ...++|+|+|++.+...... +.-..+.+||+||||++.+ +......
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREV---QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHH---SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHh---CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 99875 46777777765433322221 13578999999998754321 2234678999999999854 3444444
Q ss_pred HHHhc--c---cceEEEEeccCC
Q 000160 598 TLLNF--N---SKRRILLTGTPL 615 (1992)
Q Consensus 598 aLl~L--~---a~rRLLLTGTPL 615 (1992)
.+..+ . ..+++++||||-
T Consensus 198 i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 198 IIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHhhccCCCCCCcEEEEEEEeCC
Confidence 44432 2 346899999974
No 73
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.37 E-value=6.8e-12 Score=163.97 Aligned_cols=105 Identities=21% Similarity=0.305 Sum_probs=93.5
Q ss_pred EEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccccccCCccCCEEEEecC---
Q 000160 1016 LIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGVGINLVGADTVIFYDS--- 1091 (1992)
Q Consensus 1016 LIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~--- 1091 (1992)
|||+.....++.|...|...|+.+..++|+++.++|..+++.|+. ++.+.| |++|.+.+.|||+ .+++||+++.
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCcccc
Confidence 677777888999999999999999999999999999999999996 355666 7888999999999 9999999999
Q ss_pred -----------CCChhhHHHHHHhhcccCCc-CcEEEEEEEeC
Q 000160 1092 -----------DWNPAMDQQAQDRCHRIGQT-REVHIYRLISE 1122 (1992)
Q Consensus 1092 -----------dWNPa~d~QA~gRahRIGQT-RdV~VYRLIse 1122 (1992)
++++....|+.||++|.|+. .+-.||+|...
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88899999999999999987 45778877554
No 74
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.36 E-value=6.1e-11 Score=155.11 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=99.0
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
..|+.+|..++......|..|||||......+.|...|...|+++..|+|.....+|..+.+.|.. + .| +++|..+
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~-G--~V-tIATnmA 518 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR-G--GV-TVATNMA 518 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST-T--CE-EEEETTC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC-C--eE-EEecchh
Confidence 469999999998888889999999999999999999999999999999999875555555566654 2 34 7889999
Q ss_pred ccccCCccC----------------------------------------------------CEEEEecCCCChhhHHHHH
Q 000160 1075 GVGINLVGA----------------------------------------------------DTVIFYDSDWNPAMDQQAQ 1102 (1992)
Q Consensus 1075 G~GLNLT~A----------------------------------------------------dtVIfyD~dWNPa~d~QA~ 1102 (1992)
|.|+++... .+||.||.+-++..+.|++
T Consensus 519 gRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~ 598 (922)
T 1nkt_A 519 GRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLR 598 (922)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHH
T ss_pred hcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHh
Confidence 999998753 5999999999999999999
Q ss_pred HhhcccCCcCc
Q 000160 1103 DRCHRIGQTRE 1113 (1992)
Q Consensus 1103 gRahRIGQTRd 1113 (1992)
||++|.|..-.
T Consensus 599 GRTGRqGdpG~ 609 (922)
T 1nkt_A 599 GRSGRQGDPGE 609 (922)
T ss_dssp HTSSGGGCCEE
T ss_pred cccccCCCCee
Confidence 99999997543
No 75
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.33 E-value=1.1e-11 Score=160.89 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=87.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEE----
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTV---- 1086 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtV---- 1086 (1992)
.+.++|||+......+.|...|...|+....|+|. +|.+++++|.. +.+.| |++|.+.+.|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~-g~~~V-LVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKL-TDWDF-VVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHH-SCCSE-EEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcC-CCcEE-EEECcHHHcCcccC-ceEEEECc
Confidence 35689999999999999999999999999999984 78899999976 56666 78999999999996 8988
Q ss_pred ----------------EEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEe
Q 000160 1087 ----------------IFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLIS 1121 (1992)
Q Consensus 1087 ----------------IfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIs 1121 (1992)
|+||.+-++....|++||++|.|..+- ..|.|++
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 677778888899999999999986433 3466665
No 76
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.33 E-value=4.5e-11 Score=156.57 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=99.6
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
..|+.+|..+|......|.+|||||......+.|...|...|+.+..|+|.....+|..+...|.. ..| +++|..+
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~---g~V-lIATdmA 490 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK---GAV-TIATNMA 490 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST---TCE-EEEETTS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC---CeE-EEeCCcc
Confidence 469999999998877778899999999999999999999999999999999876666544445543 234 7889999
Q ss_pred ccccCCc--------cCCEEEEecCCCChhhHHHHHHhhcccCCcCc
Q 000160 1075 GVGINLV--------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1113 (1992)
Q Consensus 1075 G~GLNLT--------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRd 1113 (1992)
|.|+++. +..+||.||.+-++..+.|++||++|.|..-.
T Consensus 491 gRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 491 GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp STTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred ccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 9999998 78899999999999999999999999997544
No 77
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.33 E-value=3.1e-11 Score=157.68 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=100.4
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
..|+.+|..++..+...|..|||||......+.|...|...|+++..|+|.....+|..+.+.|... . ++++|..+
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATnmA 499 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA---A-VTIATNMA 499 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT---C-EEEEESCC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecccc
Confidence 4699999999988878899999999999999999999999999999999998766666666777642 3 47899999
Q ss_pred ccccCCccC-------------------------------------CEEEEecCCCChhhHHHHHHhhcccCCcCc
Q 000160 1075 GVGINLVGA-------------------------------------DTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1113 (1992)
Q Consensus 1075 G~GLNLT~A-------------------------------------dtVIfyD~dWNPa~d~QA~gRahRIGQTRd 1113 (1992)
|.|+++... .+||.||.+-++..+.|++||++|.|..-.
T Consensus 500 gRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 500 GRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp SSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 999999752 599999999999999999999999997544
No 78
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.33 E-value=1.1e-11 Score=142.01 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhc-CCCCcEEEEecC-CcHHHHHHHHHHHCC--C
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK-GIWGPHLIVVPT-SVMLNWETEFLKWCP--A 529 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ek-g~~GP~LIVVPt-SLL~NWe~EfkKw~P--~ 529 (1992)
.|++||..++..+.. +.+.|+...+|.|||+..+..+....... +....+|||||+ .++.||..++++++. +
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 489999999987764 57799999999999998654444333222 223368999999 688999999999986 4
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh----hhhccCccEEEEcCccccCC-----hhhHHHHHHH
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK----VFKRKKWKYLILDEAHLIKN-----WKSQRWQTLL 600 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~----~f~r~~W~~LILDEAH~IKN-----~~Sq~~qaLl 600 (1992)
+++..++|...... .........++|+|+|++.+..... .+.-..+.+||+||||++-. +.......+.
T Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 127 FRIHMIHKAAVAAK--KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCEECCCHHHHHHT--TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred ceEEEEecCccHHH--HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 66666666543322 1112234578999999998865432 22334689999999999853 4444444444
Q ss_pred hc--ccceEEEEeccC
Q 000160 601 NF--NSKRRILLTGTP 614 (1992)
Q Consensus 601 ~L--~a~rRLLLTGTP 614 (1992)
.+ ...++++||||+
T Consensus 205 ~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 205 ACTSHKVRRAMFSATF 220 (245)
T ss_dssp HCCCTTCEEEEEESSC
T ss_pred hcCCCCcEEEEEeccC
Confidence 43 345789999998
No 79
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.29 E-value=3.3e-10 Score=161.03 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=100.1
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHH-HCC--C
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLK-WCP--A 529 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkK-w~P--~ 529 (1992)
.+.|.|...+.-+ |..+.|.+++-.+|.|||+.+.-.|...... +..+..|+|+|+ ++..|=..+|.+ +.+ +
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~-~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-SSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-CCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 4789999998654 5578899999999999999875444433332 234579999998 666666666653 433 6
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhh----ccCccEEEEcCccccCChhhHHHHHHH-hc--
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFK----RKKWKYLILDEAHLIKNWKSQRWQTLL-NF-- 602 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~----r~~W~~LILDEAH~IKN~~Sq~~qaLl-~L-- 602 (1992)
++|..+.|........+ ...+|+|+|++.+..-..... -....+||+||+|.|.......+..++ .+
T Consensus 1002 ~~V~~ltGd~~~~~~~~------~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKLL------GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRY 1075 (1724)
T ss_dssp CCEEECCSCHHHHHHHH------HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcchhhc------CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHH
Confidence 78999999765443222 246899999987632211111 124589999999999765444333322 12
Q ss_pred ------ccceEEEEecc
Q 000160 603 ------NSKRRILLTGT 613 (1992)
Q Consensus 603 ------~a~rRLLLTGT 613 (1992)
+..+.++||+|
T Consensus 1076 i~~~~~~~~riI~lSAT 1092 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSS 1092 (1724)
T ss_dssp HHHTTSSCCEEEEEESC
T ss_pred HHhhcCCCceEEEEeCC
Confidence 23467899998
No 80
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.27 E-value=3.8e-11 Score=159.71 Aligned_cols=111 Identities=22% Similarity=0.229 Sum_probs=95.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHH-----------cCCcEEEecCCCCHHHHHHHHHHHhc----CCCceEEEEeccccc
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISL-----------YGYTYMRLDGSTQPEERQTLMQRFNT----NPKIFLFILSTRSGG 1075 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~-----------~Gi~y~RLDGsts~eqRq~lIerFN~----D~~ifVfLLSTrAGG 1075 (1992)
.+.++|||+......+.+...|.. .++.++.++|+++.++|+.+++.|.. ++.+.| |++|.+++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV-lVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV-VISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE-EEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE-EEeCcHHH
Confidence 467999999999999998888874 68889999999999999999999971 355665 78999999
Q ss_pred cccCCccCCEEEEecC------------------CCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCH
Q 000160 1076 VGINLVGADTVIFYDS------------------DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1125 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~------------------dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1125 (1992)
.|||+.+.+.||.++. +.++....|+.||++|. ++=.+|+|+++...
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999555 78889999999999998 56678899875444
No 81
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.26 E-value=2.5e-11 Score=137.57 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=105.2
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHh------cCCCCcEEEEecC-CcHHHHHHHHHHH
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACE------KGIWGPHLIVVPT-SVMLNWETEFLKW 526 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~e------kg~~GP~LIVVPt-SLL~NWe~EfkKw 526 (1992)
.|++||..++..+.. +.+.|+...+|.|||+..+..+...... ....+.+|||||+ .+..||..+++++
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 589999999988764 6789999999999998865544332211 1234568999999 5889999999998
Q ss_pred C-CCCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCCh--hhHHHHHHHh
Q 000160 527 C-PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLN 601 (1992)
Q Consensus 527 ~-P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN~--~Sq~~qaLl~ 601 (1992)
. +++++..++|..........- ...++|+|+|++.+..... .+.-..+.+||+||||++-+. .......+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIEDI---SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp CCTTCCEEEECC------CHHHH---HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred cccCceEEEEECCCChHHHHHHh---cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 6 568888888765433221111 1347899999998865321 222345899999999997643 3444445555
Q ss_pred cc-cceEEEEeccCC
Q 000160 602 FN-SKRRILLTGTPL 615 (1992)
Q Consensus 602 L~-a~rRLLLTGTPL 615 (1992)
+. ..+.+++|||.-
T Consensus 195 ~~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 195 VRPDRQTVMTSATWP 209 (228)
T ss_dssp SCSSCEEEEEESCCC
T ss_pred CCcCCeEEEEEeeCC
Confidence 54 457799999953
No 82
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.20 E-value=8.4e-11 Score=152.52 Aligned_cols=102 Identities=22% Similarity=0.218 Sum_probs=83.6
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEE---
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVI--- 1087 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVI--- 1087 (1992)
.+.++|||+......+.|...|+..|+....++|+++..+ |.++. .. +|++|.+.+.|||+. .+.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~-~~-VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIG-DV-VVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSS-CE-EEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCC-Cc-EEEECChHHccCCCC-CcEEEecC
Confidence 4679999999999999999999999999999999998653 33333 34 578999999999985 99988
Q ss_pred -------Eec-----------CCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHH
Q 000160 1088 -------FYD-----------SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1126 (1992)
Q Consensus 1088 -------fyD-----------~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1126 (1992)
.|| .+-++....|++||++| |..- + |+|++.+...
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e~~ 517 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGERP 517 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCCBC
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecchhh
Confidence 466 67778899999999999 6543 3 7888876543
No 83
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.18 E-value=5.4e-09 Score=134.48 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=98.8
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000160 994 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1073 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrA 1073 (1992)
...|..+|..++......|.+|||||......+.|...|...|+++..|+|.....+|..+...|.. + . ++++|..
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~-g--~-VtVATdm 531 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK-G--M-VTIATNM 531 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST-T--C-EEEEETT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC-C--e-EEEEcch
Confidence 3579999999999887789999999999999999999999999999999998543334333444533 2 3 4789999
Q ss_pred cccccCCc--------cCCEEEEecCCCChhhHHHHHHhhcccCCcCcE
Q 000160 1074 GGVGINLV--------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREV 1114 (1992)
Q Consensus 1074 GG~GLNLT--------~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV 1114 (1992)
+|.|+++. +..+||.||.+-++..+.|++||++|.|+.-..
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 99999997 678999999999999999999999999986554
No 84
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.18 E-value=9.8e-10 Score=156.25 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=102.4
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcC--------CCCcEEEEecC-CcHHHHHHHHH
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG--------IWGPHLIVVPT-SVMLNWETEFL 524 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg--------~~GP~LIVVPt-SLL~NWe~Efk 524 (1992)
.|.+.|...+.-+ |..+.|.+++-.+|.|||+.+.-.+........ ..+.+|+|+|+ +|..+=..+|.
T Consensus 79 ~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 5889999988654 457889999999999999987655544332211 23468999998 67777777776
Q ss_pred HHCC--CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhh------chhhhhccCccEEEEcCccccCChhhHHH
Q 000160 525 KWCP--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQ------DSKVFKRKKWKYLILDEAHLIKNWKSQRW 596 (1992)
Q Consensus 525 Kw~P--~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~q------D~~~f~r~~W~~LILDEAH~IKN~~Sq~~ 596 (1992)
+.+. +++|..++|.....+.. ....+|+|||++.+.. +...+ ....+||+||+|.|.....-.+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~------~~~~~IlVtTpEkld~llr~~~~~~~l--~~v~~vIiDEvH~l~d~RG~~l 227 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE------ISATQIIVCTPEKWDIITRKGGERTYT--QLVRLIILDEIHLLHDDRGPVL 227 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT------GGGCSEEEECHHHHHHHTTSSTTHHHH--TTEEEEEETTGGGGGSTTHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc------cCCCCEEEECHHHHHHHHcCCccchhh--cCcCEEEEecchhcCCccHHHH
Confidence 5543 57898898865322111 1357899999987521 11122 2468999999999976433333
Q ss_pred HHHH--------hc-ccceEEEEeccCCCCChHHH
Q 000160 597 QTLL--------NF-NSKRRILLTGTPLQNDLMEL 622 (1992)
Q Consensus 597 qaLl--------~L-~a~rRLLLTGTPLQNsL~EL 622 (1992)
..++ .+ ..-++++||||- .|+.++
T Consensus 228 E~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dv 260 (1724)
T 4f92_B 228 EALVARAIRNIEMTQEDVRLIGLSATL--PNYEDV 260 (1724)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHH
Confidence 3322 12 234789999993 234443
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.17 E-value=9e-11 Score=136.72 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=107.7
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhc----CCCCcEEEEecC-CcHHHHHHHHHHHCC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK----GIWGPHLIVVPT-SVMLNWETEFLKWCP 528 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ek----g~~GP~LIVVPt-SLL~NWe~EfkKw~P 528 (1992)
.|++||..++..+.. +.+.|+.-.+|.|||+..+..+....... ...+.+|||||+ .++.||..+|++++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 489999999987765 56789999999999998665544433321 123468999999 688999999999986
Q ss_pred --CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhh---hhccCccEEEEcCccccCC--hhhHHHHHHHh
Q 000160 529 --AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV---FKRKKWKYLILDEAHLIKN--WKSQRWQTLLN 601 (1992)
Q Consensus 529 --~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~---f~r~~W~~LILDEAH~IKN--~~Sq~~qaLl~ 601 (1992)
+.++..++|..........-. ..++|+|+|++.+...... +.-..+.+|||||||++-. +.......+..
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~---~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKLG---NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHHH---HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hcCceEEEEECCCCHHHHHHHhc---CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 456677777554332221110 2378999999988654322 2334579999999999754 34444444555
Q ss_pred cc-cceEEEEeccCC
Q 000160 602 FN-SKRRILLTGTPL 615 (1992)
Q Consensus 602 L~-a~rRLLLTGTPL 615 (1992)
+. ..+.++|||||-
T Consensus 229 ~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 229 LPTRRQTMLFSATQT 243 (262)
T ss_dssp SCSSSEEEEECSSCC
T ss_pred CCCCCeEEEEEecCC
Confidence 53 456899999975
No 86
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.17 E-value=1e-10 Score=134.26 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=107.0
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhc-----CCCCcEEEEecC-CcHHHHHHHHHHHC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK-----GIWGPHLIVVPT-SVMLNWETEFLKWC 527 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ek-----g~~GP~LIVVPt-SLL~NWe~EfkKw~ 527 (1992)
.+++||..++..+.. +.+.|+.-.+|.|||+..+..+....... +..+.+|||||+ .++.||...+++++
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 479999999988765 67899999999999998655444333321 234468999999 67889999999886
Q ss_pred C--CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh--hhhccCccEEEEcCccccCC--hhhHHHHHHHh
Q 000160 528 P--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLN 601 (1992)
Q Consensus 528 P--~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~--~f~r~~W~~LILDEAH~IKN--~~Sq~~qaLl~ 601 (1992)
. ++++..++|..........-. ..++|+|+|++.+..... .+.-..+.+||+||||++-. +.......+..
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~~---~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDLE---RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHHH---HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred hhcCceEEEEECCCChHHHHHHhc---CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 3 578888887654332221110 246899999998865432 22334678999999999764 33344444444
Q ss_pred c-ccceEEEEeccC
Q 000160 602 F-NSKRRILLTGTP 614 (1992)
Q Consensus 602 L-~a~rRLLLTGTP 614 (1992)
+ ...+.+++|||+
T Consensus 204 ~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 204 IRPDRQTLMWSATW 217 (242)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCccceEEEEEeec
Confidence 4 345789999996
No 87
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.98 E-value=1.5e-09 Score=129.08 Aligned_cols=155 Identities=19% Similarity=0.159 Sum_probs=104.8
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC---CC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC---PA 529 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~---P~ 529 (1992)
.++++|..++..++. ..+.+.|+.-.+|.|||+..+.-+.......+.....|||||+ .|..|+...+.+++ ++
T Consensus 114 ~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~ 191 (300)
T 3fmo_B 114 RPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (300)
T ss_dssp SCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC
Confidence 478999999977653 1247889999999999988653333322223333468999999 57888888888765 67
Q ss_pred CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchh---hhhccCccEEEEcCccccCC---hhhHHHHHHHhcc
Q 000160 530 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK---VFKRKKWKYLILDEAHLIKN---WKSQRWQTLLNFN 603 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~---~f~r~~W~~LILDEAH~IKN---~~Sq~~qaLl~L~ 603 (1992)
+++..++|....... .....+|+|+|+..+..... .+.-....+|||||||++-. +.......+..+.
T Consensus 192 ~~~~~~~~~~~~~~~------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~ 265 (300)
T 3fmo_B 192 LKLAYAVRGNKLERG------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265 (300)
T ss_dssp CCEEEESTTCCCCTT------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC
T ss_pred cEEEEEeCCccHhhh------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC
Confidence 888888876542211 12456899999998865432 23334678999999999753 3333333333333
Q ss_pred -cceEEEEeccCCC
Q 000160 604 -SKRRILLTGTPLQ 616 (1992)
Q Consensus 604 -a~rRLLLTGTPLQ 616 (1992)
..+.+++|||+-.
T Consensus 266 ~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 266 RNCQMLLFSATFED 279 (300)
T ss_dssp TTCEEEEEESCCCH
T ss_pred CCCEEEEEeccCCH
Confidence 3578999999853
No 88
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.92 E-value=1.9e-08 Score=131.88 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=110.7
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
.+++..|...|......|.+||||+....+.+.|..+|..+|+....++|.++..+|..++++|.. +.+.| |++|...
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~-g~~~V-LVaT~~l 505 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL-GKYDV-LVGINLL 505 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH-TSCSE-EEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc-CCeEE-EEecchh
Confidence 366777777777777788999999999999999999999999999999999999999999999986 56665 6889999
Q ss_pred ccccCCccCCEEEEecC-----CCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCH
Q 000160 1075 GVGINLVGADTVIFYDS-----DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1125 (1992)
Q Consensus 1075 G~GLNLT~AdtVIfyD~-----dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1125 (1992)
+.|+++..++.||+||. ++++....|++||++|- +.-.++.|+...+.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITK 558 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCH
Confidence 99999999999999998 89999999999999996 34456667877653
No 89
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.87 E-value=1.4e-08 Score=133.30 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=110.6
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1074 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAG 1074 (1992)
.+++..|...|......+.+||||+....+.+.|..+|..+|+.+..++|.++..+|..++++|.. +.+.| |++|...
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~-g~~~V-LvaT~~l 499 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL-GHYDC-LVGINLL 499 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT-TSCSE-EEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc-CCceE-EEccChh
Confidence 467777777787777788999999999999999999999999999999999999999999999975 56665 6888999
Q ss_pred ccccCCccCCEEEEecC-----CCChhhHHHHHHhhcccCCcCcEEEEEEEeCCC
Q 000160 1075 GVGINLVGADTVIFYDS-----DWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1124 (1992)
Q Consensus 1075 G~GLNLT~AdtVIfyD~-----dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1124 (1992)
+.|+|+..++.||+||. ++++....|++||++|.|. -.++.|+...+
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 99999999999999998 8999999999999999863 34666777765
No 90
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.74 E-value=7.7e-09 Score=95.50 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=43.4
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
...+||++||++|..+|..||+ ||..|+..+ +. ..|+++||++||+.|+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~---~~------~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNY---PF------VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS---CC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhc---CC------CCCCHHHHHHHHHHHhc
Confidence 3689999999999999999997 899999865 21 23999999999999875
No 91
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.73 E-value=8.4e-09 Score=91.73 Aligned_cols=49 Identities=31% Similarity=0.469 Sum_probs=43.1
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
.++||++||++|..+|..||+ ||..|+..| +. ..|+++||++||..++.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~---~~------~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHY---KF------NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS---CC------SSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc---CC------CCCCHHHHHHHHHHHHc
Confidence 589999999999999999996 899999977 21 14999999999999874
No 92
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.69 E-value=1.2e-08 Score=90.41 Aligned_cols=47 Identities=26% Similarity=0.649 Sum_probs=42.9
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
.++||++||++|..+|..||+ ||..||..| + .|+++||++||..++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL---P--------NRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS---T--------TCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc---C--------CCCHHHHHHHHHHHcC
Confidence 689999999999999999999 999999976 2 3999999999999873
No 93
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.66 E-value=2.2e-06 Score=112.41 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=92.5
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH----HHHHHHHHHCC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML----NWETEFLKWCP 528 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~----NWe~EfkKw~P 528 (1992)
....+-|..|+--|+. +. |..-.+|.|||+.+...+ ++....| ..++||+|+..|. +|...|-+++
T Consensus 78 ~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~-~L~aL~G--~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAV-ALNALTG--KGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp CCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHH-HHHHTTC--SCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred CCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHH-HHHHHhC--CCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 3568889999865543 22 878889999999654333 2222233 3589999997543 3888887776
Q ss_pred CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhh----hchh-----hhhcc---CccEEEEcCccccCChhhHHH
Q 000160 529 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLII----QDSK-----VFKRK---KWKYLILDEAHLIKNWKSQRW 596 (1992)
Q Consensus 529 ~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~----qD~~-----~f~r~---~W~~LILDEAH~IKN~~Sq~~ 596 (1992)
++++.+.+|...... ++.. ...+|++.|...+. ++.. .+... ...++||||||.+-
T Consensus 148 GLsv~~i~Gg~~~~~-r~~a----y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL------- 215 (997)
T 2ipc_A 148 GLSVGVIQHASTPAE-RRKA----YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL------- 215 (997)
T ss_dssp TCCEEECCTTCCHHH-HHHH----HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT-------
T ss_pred CCeEEEEeCCCCHHH-HHHH----cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH-------
Confidence 578877777543221 1111 14689999998873 2221 12223 67899999999542
Q ss_pred HHHHhcccceEEEEeccCCCCChHHHHHHH
Q 000160 597 QTLLNFNSKRRILLTGTPLQNDLMELWSLM 626 (1992)
Q Consensus 597 qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL 626 (1992)
.-.+..-|.+|| |...+ ..+|..+
T Consensus 216 ----iDeartPLIISg-p~~~~-~~lY~~~ 239 (997)
T 2ipc_A 216 ----IDEARTPLIISG-PAEKA-TDLYYKM 239 (997)
T ss_dssp ----TSSTTSCEEEEE-SCSSC-HHHHHHH
T ss_pred ----HhCCCCCeeeeC-CCccc-hHHHHHH
Confidence 112334499999 88776 4444433
No 94
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.64 E-value=1.2e-08 Score=90.28 Aligned_cols=46 Identities=33% Similarity=0.686 Sum_probs=41.8
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1646 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1646 (1992)
.++||++||++|..+|..||+ ||..||..| + .|+++||++||..++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL---K--------GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS---T--------TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHc---C--------CCCHHHHHHHHHHHc
Confidence 689999999999999999998 799999976 2 399999999999875
No 95
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=5.1e-08 Score=90.56 Aligned_cols=55 Identities=16% Similarity=0.390 Sum_probs=49.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCC
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDN 1656 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~ 1656 (1992)
.++||++||++|..+|..||.+|..||. | + | |++++|++||..++.....-..++
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~---~------g--Rt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQWRTIAP-I---I------G--RTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCHHHHHH-H---H------S--SCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHhc-c---c------C--cCHHHHHHHHHHHhChHhcCCCCC
Confidence 7899999999999999999999999999 6 1 2 999999999999999987765543
No 96
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.57 E-value=2.7e-08 Score=90.62 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=43.1
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
..++|+++||++|..+|..||+ ||..||..| + .|+++||++||..++.
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHF---P--------NRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC---S--------SSCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc---c--------CCCHHHHHHHHHHHcC
Confidence 3789999999999999999997 899999987 2 3999999999998764
No 97
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.55 E-value=5.2e-08 Score=91.30 Aligned_cols=52 Identities=29% Similarity=0.432 Sum_probs=45.4
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHh
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI 1650 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~ 1650 (1992)
.++||++||++|..+|..||+ ||..|+..| +. ..|+++||++||..++....
T Consensus 10 r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~---~~------~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 10 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHY---KF------NNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS---CC------SSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc---Cc------CCCCHHHHHHHHHHHcCCCC
Confidence 789999999999999999996 899999977 21 15999999999999987643
No 98
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.54 E-value=6.5e-08 Score=87.67 Aligned_cols=47 Identities=19% Similarity=0.468 Sum_probs=41.8
Q ss_pred CCCCChhhhHHHHHHHHhcC-CChhHHHHHhhccccCccccccccCchhhHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYG-PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1646 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g-~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1646 (1992)
.++||++||++|..+|..|| .||..||..| . ..|+++||++||..+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~---~-------~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYV---G-------NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHH---C-------SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHH---C-------CCCCHHHHHHHHHHHc
Confidence 67999999999999999999 6999999988 2 1499999999998763
No 99
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.53 E-value=6.9e-08 Score=88.06 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=42.8
Q ss_pred CCCCCChhhhHHHHHHHHhcC-CChhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYG-PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g-~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
..++|+++||++|..+|..|| .||..||..| -.|+++||++||..++.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-----------~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQM-----------CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH-----------TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh-----------CCCCHHHHHHHHHHHcc
Confidence 378999999999999999999 5999999988 23999999999998753
No 100
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-07 Score=88.97 Aligned_cols=48 Identities=33% Similarity=0.657 Sum_probs=43.1
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
..++|+++||++|..+|..||+ ||..||..| . .|+++||++||..++.
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLL---H--------RKSAKQCKARWYEWLD 56 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS---T--------TCCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh---c--------CCCHHHHHHHHHHHcC
Confidence 4789999999999999999995 899999987 2 4999999999998764
No 101
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.42 E-value=3.4e-07 Score=93.02 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=59.9
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
+++||++||++|..+|..||+ ||..||..| + .|+++||++||..++.- . .+.|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~L~p------------~-i~~~-- 54 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM---I--------TRNPRQCRERWNNYINP------------A-LRTD-- 54 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT---T--------TSCHHHHHHHHHHHSSS------------C-CTTC--
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc---C--------CCCHHHHHHHHHHHHcc------------c-cccc--
Confidence 378999999999999999998 899999987 2 39999999999987631 0 1222
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQEDN 1692 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~~~~ 1692 (1992)
.-|+++-..|+..+.+..++
T Consensus 55 ----~WT~eEd~~L~~~~~~~G~~ 74 (107)
T 2k9n_A 55 ----PWSPEEDMLLDQKYAEYGPK 74 (107)
T ss_dssp ----CCCHHHHHHHHHHHHHTCSC
T ss_pred ----ccCHHHHHHHHHHHHHhCcC
Confidence 47888889999999888764
No 102
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.38 E-value=4.2e-07 Score=85.88 Aligned_cols=53 Identities=13% Similarity=0.321 Sum_probs=48.3
Q ss_pred CCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhh
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILS 1652 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~ 1652 (1992)
..++|+++||++|..+|..||.+|..||..| -.|++.+|+.||..++.+....
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~-----------~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLI-----------GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-----------SSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999988 3399999999999999987655
No 103
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.38 E-value=2.9e-07 Score=96.22 Aligned_cols=74 Identities=18% Similarity=0.383 Sum_probs=61.4
Q ss_pred CCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
.+++||++||++|..+|..||.||..||..| + .|+++||++||..++.- . .+.|
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~l~p------------~-~~~~-- 63 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATF---P--------NRNARQCRDRWKNYLAP------------S-ISHT-- 63 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTC---T--------TCCHHHHHHHHHHHTST------------T-SCCS--
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHc---C--------CCCHHHHHHHHhhhccc------------c-cccc--
Confidence 4789999999999999999999999999977 2 39999999999987621 0 1222
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQEDN 1692 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~~~~ 1692 (1992)
.-|+++-..|+..+.+.+.+
T Consensus 64 ----~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 64 ----PWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHCSC
T ss_pred ----cCCHHHHHHHHHHHHHHCcC
Confidence 48999999999999888764
No 104
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.36 E-value=1.1e-06 Score=113.07 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=91.5
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--C
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--A 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P--~ 529 (1992)
..+||||...+.-+......+.++|+--.+|.|||+..+.-+.. ..+++||++|+ .+..||..++.+... +
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 36899999998866666667788999999999999877544333 13589999999 578889999988743 5
Q ss_pred CeEEEEeCchhHHHHh-------------hhccCC-----------------------------------CCCceEEEEe
Q 000160 530 FKILTYFGSAKERKFK-------------RQGWLK-----------------------------------PNSFHVCITT 561 (1992)
Q Consensus 530 lKVL~Y~Gs~keRk~k-------------r~gw~k-----------------------------------~~~fdVVITS 561 (1992)
+++.+..|...--... -..|.. ....+|||++
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 7788777743210000 000110 1245899999
Q ss_pred ehhhhhchhh--hh-ccCccEEEEcCccccCC
Q 000160 562 YRLIIQDSKV--FK-RKKWKYLILDEAHLIKN 590 (1992)
Q Consensus 562 Ye~l~qD~~~--f~-r~~W~~LILDEAH~IKN 590 (1992)
|..+..+... +. .....+|||||||+|-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999876311 11 13567899999999976
No 105
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.34 E-value=2.8e-07 Score=93.22 Aligned_cols=73 Identities=23% Similarity=0.466 Sum_probs=59.4
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCc
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGS 1667 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 1667 (1992)
..++||++||++|..+|+.||+ ||..||..| + .|+++||++||..++. + .. ..|
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~l~---------p---~~-~~~- 57 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL---K--------GRIGKQCRERWHNHLN---------P---EV-KKT- 57 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS---T--------TCCHHHHHHHHHHTTC---------C---CC-CCC-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh---c--------CCCHHHHHHHHHhccC---------C---cc-ccc-
Confidence 3689999999999999999998 799999977 2 4999999999998752 1 01 122
Q ss_pred cceeEeechHHHHHHHHHHHhccc
Q 000160 1668 GKALLKVTEDNVRTLLNVAAEQED 1691 (1992)
Q Consensus 1668 ~~~~~~~~~~~~~~~~~~~~~~~~ 1691 (1992)
.-|+++-..|+.++.+.++
T Consensus 58 -----~Wt~eEd~~L~~~~~~~G~ 76 (105)
T 1gv2_A 58 -----SWTEEEDRIIYQAHKRLGN 76 (105)
T ss_dssp -----CCCHHHHHHHHHHHHHHSS
T ss_pred -----CCCHHHHHHHHHHHHHhCC
Confidence 4688888999999888775
No 106
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.28 E-value=4.4e-07 Score=85.76 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=41.8
Q ss_pred CCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1646 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1646 (1992)
..++||++||++|..+|.+||++|..||..| | |++.+|+.||+.|.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-g-----------Rt~~q~knRw~~L~ 67 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-G-----------RSASSVKDRCRLMK 67 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-T-----------SCHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-C-----------CCHHHHHHHHHHHH
Confidence 4789999999999999999999999999966 2 99999999999763
No 107
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.27 E-value=5.4e-07 Score=86.60 Aligned_cols=46 Identities=26% Similarity=0.477 Sum_probs=42.0
Q ss_pred CCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1645 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1645 (1992)
..++|+++||.+|...|..||.||..||..| -.|+++||+.||..+
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v-----------~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHV-----------GSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHH-----------SSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHc-----------CCCCHHHHHHHHHHh
Confidence 4789999999999999999999999999988 239999999999876
No 108
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.25 E-value=1.9e-06 Score=110.60 Aligned_cols=96 Identities=11% Similarity=0.250 Sum_probs=56.1
Q ss_pred HHHHHHHHHHh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccc
Q 000160 999 QELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVG 1077 (1992)
Q Consensus 999 q~L~~LL~kLk-s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~G 1077 (1992)
..+...|..+. ..+.++|||...-.+++.+...|.. +. +.+.|.. ..|..++++|...+.+ .|.+.|.+..+|
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~~i-l~~V~~~~~~EG 443 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGKYL-VMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSCCE-EEEEC-------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCCeE-EEEEecCceecc
Confidence 34455554443 4467999999999999888887754 33 3455554 3689999999874322 223367899999
Q ss_pred cCCcc----CCEEEEecCCCChhhHHH
Q 000160 1078 INLVG----ADTVIFYDSDWNPAMDQQ 1100 (1992)
Q Consensus 1078 LNLT~----AdtVIfyD~dWNPa~d~Q 1100 (1992)
||+.+ +..||++..|+-+..+..
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~ 470 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDM 470 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHH
T ss_pred eecCCCcccccEEEEECCCCCCCCCHH
Confidence 99997 788999998865553333
No 109
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.24 E-value=4.1e-06 Score=95.70 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=91.7
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC--CCcEEEEecCC-cHHHHHHHHHHHCCC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI--WGPHLIVVPTS-VMLNWETEFLKWCPA 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~--~GP~LIVVPtS-LL~NWe~EfkKw~P~ 529 (1992)
.++++||...+..+.. +...++.-.+|.|||.+...++.......+. ....|+++|+. +..|....+.+....
T Consensus 60 ~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3478999999988765 6678899999999997665555543333332 23678888985 445566666655431
Q ss_pred ---CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhH----HHHHHHhc
Q 000160 530 ---FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQ----RWQTLLNF 602 (1992)
Q Consensus 530 ---lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq----~~qaLl~L 602 (1992)
..+ .| +.... ........+|+|+|...+...... .-.++++|||||||.. +.... ..+.+...
T Consensus 136 ~~~~~~-g~-~~~~~------~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~-~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 136 EPGKSC-GY-SVRFE------SILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHER-DINTDFLLVVLRDVVQA 205 (235)
T ss_dssp CTTSSE-EE-EETTE------EECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSC-CHHHHHHHHHHHHHHHH
T ss_pred ccCceE-EE-eechh------hccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccC-CcchHHHHHHHHHHHhh
Confidence 111 11 11110 011124578999999877665332 2346799999999973 12221 22223322
Q ss_pred -ccceEEEEeccCCC
Q 000160 603 -NSKRRILLTGTPLQ 616 (1992)
Q Consensus 603 -~a~rRLLLTGTPLQ 616 (1992)
...+.+++|||+-.
T Consensus 206 ~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 206 YPEVRIVLMSATIDT 220 (235)
T ss_dssp CTTSEEEEEECSSCC
T ss_pred CCCCeEEEEecCCCH
Confidence 44578999999753
No 110
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.23 E-value=7.2e-07 Score=93.83 Aligned_cols=73 Identities=22% Similarity=0.375 Sum_probs=60.1
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
+++||++||++|..+|..||+ ||..||..| + .|+++||++||..++.- . .+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~l~p------------~-~~~~-- 55 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL---P--------NRSPKQCRERWFNHLDP------------A-VVKH-- 55 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC---T--------TSCHHHHHHHHHHHTST------------T-CCCS--
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH---C--------CCCHHHHHHHHhhccCc------------c-ccCC--
Confidence 589999999999999999996 899999976 2 39999999999988731 1 1222
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQEDN 1692 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~~~~ 1692 (1992)
.-|+++-..|+..+.+..++
T Consensus 56 ----~Wt~eEd~~L~~~~~~~G~~ 75 (131)
T 3zqc_A 56 ----AWTPEEDETIFRNYLKLGSK 75 (131)
T ss_dssp ----CCCHHHHHHHHHHHHHSCSC
T ss_pred ----CCCHHHHHHHHHHHHHHCcC
Confidence 47889999999999888864
No 111
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.19 E-value=1.1e-06 Score=91.88 Aligned_cols=73 Identities=23% Similarity=0.426 Sum_probs=59.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCc
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGS 1667 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 1667 (1992)
..++||++||+.|..+|+.||+ ||..||..| + .|++++|++||..++.. . ...|
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~l~p------------~-~~~~- 80 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL---K--------GRIGKQCRERWHNHLNP------------E-VKKT- 80 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS---S--------SCCHHHHHHHHHHTTCS------------S-SCCS-
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh---c--------CCcHHHHHHHHHHhccc------------c-cccc-
Confidence 3789999999999999999998 699999987 2 39999999999986521 0 1222
Q ss_pred cceeEeechHHHHHHHHHHHhccc
Q 000160 1668 GKALLKVTEDNVRTLLNVAAEQED 1691 (1992)
Q Consensus 1668 ~~~~~~~~~~~~~~~~~~~~~~~~ 1691 (1992)
.-|+++-..|+..+.+.++
T Consensus 81 -----~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 81 -----SWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -----CCCHHHHHHHHHHHHHHCS
T ss_pred -----cCCHHHHHHHHHHHHHHCc
Confidence 4788888999999888775
No 112
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1.1e-06 Score=83.73 Aligned_cols=51 Identities=16% Similarity=0.371 Sum_probs=44.9
Q ss_pred CCCCCChhhhHHHHHHHHhcC------CChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHh
Q 000160 1589 SPDVWLPQEDAILCAVVHEYG------PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI 1650 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g------~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~ 1650 (1992)
..++||++||++|..+|..|| .||..||..| -.|+++||++||..++.+..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~-----------~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-----------GNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH-----------SSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh-----------CCCCHHHHHHHHHHHHHHHH
Confidence 368999999999999999999 5799999988 23999999999988887643
No 113
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.10 E-value=2.7e-06 Score=86.40 Aligned_cols=50 Identities=30% Similarity=0.599 Sum_probs=45.9
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHh
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI 1650 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~ 1650 (1992)
.++||++||++|..+|.+||++|..||..| -.|++.+|+.||..|+.+..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-----------~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFL-----------KNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-----------SSSCHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHC-----------CCCCHHHHHHHHHHHHhhHH
Confidence 689999999999999999999999999988 34999999999999988754
No 114
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.10 E-value=2.4e-06 Score=82.79 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=45.5
Q ss_pred CCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhh
Q 000160 1591 DVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1651 (1992)
Q Consensus 1591 ~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1651 (1992)
.+||++||++|...|..||+ ||..|+.. |. ..+ ..|++++|++||++++.+..+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~-~~----~~~--~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMR-AF----DNA--DHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHH-HC----TTC--TTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHh-hc----ccc--CCCCHHHHHHHHHHHHHhccC
Confidence 38999999999999999999 99999984 21 112 359999999999999988765
No 115
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.32 E-value=5.4e-07 Score=88.62 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=47.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhh
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILS 1652 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~ 1652 (1992)
.++||++||++|..+|..||.+|..||..| -.|++.+|+.||..++.+..+.
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l-----------~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGRNWSAIARMV-----------GSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 789999999999999999999999999977 2399999999999999886553
No 116
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.05 E-value=2.1e-06 Score=89.68 Aligned_cols=56 Identities=21% Similarity=0.536 Sum_probs=46.8
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCC
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDN 1656 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~ 1656 (1992)
.++||++||++|..+|.+||.+|..||..| -.|++.+|+.||..|+.+..+...+.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l-----------~gRt~~~~k~rw~~l~~k~~~p~~~~ 117 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFF-----------PGRTDIHIKNRWVTISNKLGIPQTQQ 117 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTS-----------TTCCHHHHHHHHHHHHHHTTC-----
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHc-----------CCCCHHHHHHHHHHHHHhcCCCCCCC
Confidence 679999999999999999999999999966 23999999999999999876654443
No 117
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.01 E-value=7.5e-06 Score=84.45 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=47.5
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhh
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILS 1652 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~ 1652 (1992)
..+||++||++|...|+.||. ||..|+..+. ..+ ..|++++|++||++++......
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~-----~~~--~~RT~vdlKdRWrnllk~~~~~ 87 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAF-----ENV--HHRTYVDLKDKWKTLVHTASIA 87 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHH-----SSS--CCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhc-----ccc--CCCCHHHHHHHHHHHHhhccCC
Confidence 789999999999999999998 9999998542 112 3599999999999999877543
No 118
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.97 E-value=3.1e-06 Score=85.49 Aligned_cols=48 Identities=19% Similarity=0.420 Sum_probs=43.4
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQR 1648 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~ 1648 (1992)
.++||++||++|..+|..||++|..||..| -.|++.+|+.||..++.+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l-----------~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-----------PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTC-----------TTCCHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCCCHHHHHHHc-----------CCCCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999966 239999999999998865
No 119
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.96 E-value=2.2e-05 Score=80.90 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=47.4
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhh
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1651 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1651 (1992)
.++||++||++|...|..||. +|..|+..+.. .+ ..|++++|++||++++.....
T Consensus 17 r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~-----~f--~~RT~v~lKdRWrnllk~~~~ 72 (121)
T 2juh_A 17 RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD-----NA--DHRTYVDLKDKWKTLVHTASI 72 (121)
T ss_dssp SCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS-----CC--SSCCSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc-----cc--CCCCHHHHHHHHHHHHhhhcc
Confidence 789999999999999999999 99999986621 12 359999999999999987654
No 120
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.95 E-value=5.5e-06 Score=89.85 Aligned_cols=73 Identities=23% Similarity=0.470 Sum_probs=59.3
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
.++||++||+.|..+|+.||+ +|..||..| + .|++++|++||..++.. .. ..+
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~l~p------------~~-~~~-- 111 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL---K--------GRIGKQCRERWHNHLNP------------EV-KKT-- 111 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS---T--------TCCHHHHHHHHHHTTCT------------TS-CCS--
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHc---C--------CCCHHHHHHHHHHHhCc------------cc-ccc--
Confidence 689999999999999999998 699999977 2 39999999999887521 01 122
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQEDN 1692 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~~~~ 1692 (1992)
.-|+++-+.|+..+.+.+++
T Consensus 112 ----~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 112 ----SWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp ----CCCHHHHHHHHHHHHHHCSC
T ss_pred ----CCChHHHHHHHHHHHHHCCC
Confidence 46888889999999887763
No 121
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.86 E-value=4.3e-06 Score=87.94 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=47.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCC
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVP 1654 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~ 1654 (1992)
.++||++||++|..+|.+||++|..||..| -.|++.+|+.||..++.+......
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l-----------~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLI-----------PGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTS-----------TTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHhhcCC
Confidence 689999999999999999999999999976 249999999999999988665443
No 122
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.83 E-value=8.1e-06 Score=77.23 Aligned_cols=48 Identities=15% Similarity=0.497 Sum_probs=42.8
Q ss_pred CCCCCChhhhHHHHHHHHhcC----CChhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYG----PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g----~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
..++||++||.+|..+|..|| .+|..||..| + .|++++|+.||..|++
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v---p--------GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV---P--------SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC---S--------SSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc---C--------CCCHHHHHHHHHHHHH
Confidence 368999999999999999999 3699999977 2 3999999999999975
No 123
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.81 E-value=1.6e-05 Score=80.08 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=46.4
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhh
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1651 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1651 (1992)
..+||++||++|...|..||. +|..|+..+ ...+ ..|++++|+.||++++.....
T Consensus 13 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-----~~~f--~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 13 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCA-----FEDA--DHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp CCSCCHHHHHHHHHHHHHHCSSSHHHHHSSS-----SSST--TCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-----cccc--CCCCHHHHHHHHHHHHhhccC
Confidence 789999999999999999998 999998833 1223 359999999999999986543
No 124
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.80 E-value=5.8e-05 Score=98.40 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC--CC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC--PA 529 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~--P~ 529 (1992)
+.+|++|+..+.-+..-...+.++|+.-.+|.|||+..+.-+.......+ ++++|++|+ +++.|+..++.++. ..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~--~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK--LKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC--CeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 35799999999877666677889999999999999988655444333333 578999999 57888999998764 26
Q ss_pred CeEEEEeCch
Q 000160 530 FKILTYFGSA 539 (1992)
Q Consensus 530 lKVL~Y~Gs~ 539 (1992)
+++++..|..
T Consensus 80 ~~~~~l~gr~ 89 (620)
T 4a15_A 80 IRAIPMQGRV 89 (620)
T ss_dssp CCEEECCCHH
T ss_pred eEEEEEECCC
Confidence 7877777643
No 125
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.75 E-value=5.4e-06 Score=89.92 Aligned_cols=72 Identities=19% Similarity=0.455 Sum_probs=26.0
Q ss_pred CCCCChhhhHHHHHHHHhcCC-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCCCccccccccCcc
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1668 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1992)
+++||++||++|..+|..||+ ||..||..| + .|+++||++||..++.- ....|
T Consensus 6 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~l~p-------------~~~~~-- 59 (159)
T 1h89_C 6 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL---P--------NRTDVQCQHRWQKVLNP-------------ELIKG-- 59 (159)
T ss_dssp ------------------------------------------------CHHHHHHTTTCT-------------TCCCS--
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc---C--------CCCHHHHHHHHHHccCC-------------CcCCC--
Confidence 689999999999999999997 899999977 2 39999999999977531 01122
Q ss_pred ceeEeechHHHHHHHHHHHhccc
Q 000160 1669 KALLKVTEDNVRTLLNVAAEQED 1691 (1992)
Q Consensus 1669 ~~~~~~~~~~~~~~~~~~~~~~~ 1691 (1992)
.-|++.-..|+..+...+.
T Consensus 60 ----~Wt~eEd~~L~~~v~~~g~ 78 (159)
T 1h89_C 60 ----PWTKEEDQRVIKLVQKYGP 78 (159)
T ss_dssp ----CCCHHHHHHHHHHHHHHCS
T ss_pred ----CCChHHHHHHHHHHHHhCc
Confidence 5788888999999887764
No 126
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.71 E-value=3.4e-05 Score=76.24 Aligned_cols=61 Identities=16% Similarity=0.347 Sum_probs=48.3
Q ss_pred CCCCCChhhhHHHHHHHHhcC---C-ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHH-hhhCCCCCccc
Q 000160 1589 SPDVWLPQEDAILCAVVHEYG---P-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY-ILSVPDNSINE 1660 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g---~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~-~~~~~~~~~~~ 1660 (1992)
..++||++||.+|...+..|| | +|..||..| + .|++++|+.||..|++.. ..+++..+.+.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v---p--------GRT~~q~k~ry~~l~~dv~~iesg~vp~P~ 72 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAV---E--------GRTPEEVKKHYEILVEDIKYIESGKVPFPN 72 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS---T--------TCCHHHHHHHHHHHHHHHHHHHHSSCCC--
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc---C--------CCCHHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 478999999999999999998 5 499999988 2 399999999999999875 34445555543
No 127
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.70 E-value=1.1e-05 Score=84.49 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=43.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQR 1648 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~ 1648 (1992)
.++||++||++|..+|.+||++|..||..| -.|++.+|+.||..++.+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-----------~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-----------PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHGGGS-----------TTCCHHHHHHHHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHC-----------CCCCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999976 339999999999988754
No 128
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.35 E-value=0.00013 Score=66.32 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=43.4
Q ss_pred CCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHH
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQR 1648 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~ 1648 (1992)
...+|+++||..|...|..||.+|..|+..- + ++ ..|+.+.=+.||+.|+.+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y---~---f~--~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSF---P---FQ--KGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHS---C---CC--TTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhC---C---Cc--cCcccchHHHHHHHHHhc
Confidence 3689999999999999999999999999532 1 11 459999999999999753
No 129
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00023 Score=65.07 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=42.7
Q ss_pred cccCCCCCCCCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHH
Q 000160 1581 VWSRDCVPSPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRE 1644 (1992)
Q Consensus 1581 ~~~~~~~~~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~ 1644 (1992)
...|+. .++||++|+.+++..++.||.+|..|+..| ..|++.+|..+|-.
T Consensus 6 ~~~r~~---~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l-----------~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 6 SGDRQF---MNVWTDHEKEIFKDKFIQHPKNFGLIASYL-----------ERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCCSC---CCSCCHHHHHHHHHHHHHSTTCHHHHHHHC-----------TTSCHHHHHHHHHH
T ss_pred cccccc---CCCCCHHHHHHHHHHHHHhCCCHHHHHHHc-----------CCCCHHHHHHHHHH
Confidence 344544 689999999999999999999999999877 34999999999853
No 130
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.97 E-value=0.00022 Score=80.58 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=45.2
Q ss_pred CCCCCChhhhHHHHHHHHhcCCC------hhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHh
Q 000160 1589 SPDVWLPQEDAILCAVVHEYGPN------WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI 1650 (1992)
Q Consensus 1589 ~~~~w~~~ed~~l~~~v~~~g~n------w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~ 1650 (1992)
..++||++||++|..+|..||.. |..||-.| -.|++.+||.||+.++.+..
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L-----------pGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-----------PNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-----------TTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc-----------CCCCHHHHHHHHHHHHhhhc
Confidence 37899999999999999999985 99999876 34999999999999998753
No 131
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.86 E-value=0.00096 Score=63.01 Aligned_cols=48 Identities=17% Similarity=0.401 Sum_probs=42.7
Q ss_pred CCCCChhhhHHHHHHHHhcC---CC-hhHHHHHhhccccCccccccccCchhhHHHHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYG---PN-WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1649 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g---~n-w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1649 (1992)
.++||.+||.+|...+..|+ |+ |+.|+..| | |++++|+.||+.|.+..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l----------g--Rt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL----------G--RSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH----------T--SCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh----------C--CCHHHHHHHHHHHHHhc
Confidence 67999999999999999998 44 99999976 1 89999999999998763
No 132
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.60 E-value=0.0079 Score=78.78 Aligned_cols=153 Identities=19% Similarity=0.202 Sum_probs=95.1
Q ss_pred CCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHCCC
Q 000160 451 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWCPA 529 (1992)
Q Consensus 451 Lk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL-L~NWe~EfkKw~P~ 529 (1992)
+...|-+.|+.+|...+. ...-.|+.-..|.|||.+.+.+|.++... + .++||++|++. +.|-..-+....
T Consensus 186 ~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-~--~~ILv~a~TN~AvD~i~erL~~~~-- 257 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ-G--LKVLCCAPSNIAVDNLVERLALCK-- 257 (646)
T ss_dssp SSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT-T--CCEEEEESSHHHHHHHHHHHHHTT--
T ss_pred cCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC-C--CeEEEEcCchHHHHHHHHHHHhcC--
Confidence 346799999999988765 22235788889999999999999888753 3 48999999965 555555565542
Q ss_pred CeEEEEeCchhH-------------------------HHHhhhccCC---------------------------------
Q 000160 530 FKILTYFGSAKE-------------------------RKFKRQGWLK--------------------------------- 551 (1992)
Q Consensus 530 lKVL~Y~Gs~ke-------------------------Rk~kr~gw~k--------------------------------- 551 (1992)
.+++.+....+. ++.....+.+
T Consensus 258 ~~ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 337 (646)
T 4b3f_X 258 QRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAML 337 (646)
T ss_dssp CCEEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344432211100 0000000000
Q ss_pred --CCCceEEEEeehhhhhch--hhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCC
Q 000160 552 --PNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQ 616 (1992)
Q Consensus 552 --~~~fdVVITSYe~l~qD~--~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQ 616 (1992)
....+|+++|........ ..+....|++||||||-.+-- ..++..+....+++|-|=|-|
T Consensus 338 ~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e-----~~~lipL~~~~~~ILVGD~~Q 401 (646)
T 4b3f_X 338 ESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALE-----ASCWIPLLKARKCILAGDHKQ 401 (646)
T ss_dssp HHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCH-----HHHTTTGGGSSEEEEEECTTS
T ss_pred HHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccch-----HHHHhhccccceEEEcCCccc
Confidence 012357777665554432 345667899999999976532 223444445578999999988
No 133
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.41 E-value=0.018 Score=72.21 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=84.3
Q ss_pred CCChHHHHHHHHHHHHHHccCc-cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~l-gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lK 531 (1992)
..|-+-|+.++..+......+. ..+|--..|.|||..+.++++++.+.. . ..+++++|+.....=..+.. +..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~-~-~~il~~a~T~~Aa~~l~~~~----~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG-E-TGIILAAPTHAAKKILSKLS----GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT-C-CCEEEEESSHHHHHHHHHHH----SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-C-ceEEEecCcHHHHHHHHhhh----ccc
Confidence 4689999999998766544333 668888899999998888888887643 2 47899999976543222211 222
Q ss_pred EEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHH-HhcccceEEEE
Q 000160 532 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTL-LNFNSKRRILL 610 (1992)
Q Consensus 532 VL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaL-l~L~a~rRLLL 610 (1992)
+.++|.- .............+... ..-...++++||+||+|.+. ......+ ..+....++++
T Consensus 98 ~~T~h~~------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~iiiDE~~~~~---~~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 98 ASTIHSI------LKINPVTYEENVLFEQK--------EVPDLAKCRVLICDEVSMYD---RKLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp EEEHHHH------HTEEEEECSSCEEEEEC--------SCCCCSSCSEEEESCGGGCC---HHHHHHHHHHSCTTCEEEE
T ss_pred hhhHHHH------hccCcccccccchhccc--------ccccccCCCEEEEECchhCC---HHHHHHHHHhccCCCEEEE
Confidence 2232210 00000000000011000 01112358999999999874 2333334 33456789999
Q ss_pred eccCCCC
Q 000160 611 TGTPLQN 617 (1992)
Q Consensus 611 TGTPLQN 617 (1992)
.|=|-|.
T Consensus 161 vGD~~Ql 167 (459)
T 3upu_A 161 IGDNKQI 167 (459)
T ss_dssp EECTTSC
T ss_pred ECCHHHc
Confidence 9999883
No 134
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.33 E-value=0.045 Score=71.48 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=92.8
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N-We~EfkKw~P~lK 531 (1992)
..|.+.|..++..++. +...++--..|.|||.+...++.++... ...++||++|+..... -...+.+. +++
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--~~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc--CCe
Confidence 4689999999987653 3345777789999999998888877642 2358999999976544 44445443 344
Q ss_pred EEEEeCchhHH-----------HHhh-----------hccC------------------------CCCCceEEEEeehhh
Q 000160 532 ILTYFGSAKER-----------KFKR-----------QGWL------------------------KPNSFHVCITTYRLI 565 (1992)
Q Consensus 532 VL~Y~Gs~keR-----------k~kr-----------~gw~------------------------k~~~fdVVITSYe~l 565 (1992)
++-+.+..++. ...+ ..+. -....+||++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 44433221100 0000 0000 012346888887655
Q ss_pred hhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCC
Q 000160 566 IQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQN 617 (1992)
Q Consensus 566 ~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQN 617 (1992)
.. ..+....|++||||||..+-... .+-.+ +....+++|.|=|-|-
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~--~li~l--~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPE--CMVPV--VLGAKQLILVGDHCQL 376 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHH--HHHHH--TTTBSEEEEEECTTSC
T ss_pred cc--hhhhcCCCCEEEEecccccCcHH--HHHHH--HhcCCeEEEecChhcc
Confidence 32 23566789999999997665432 12112 2345789999999883
No 135
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.065 Score=71.89 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=92.5
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH-HHHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN-WETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N-We~EfkKw~P~lK 531 (1992)
..|.+.|..++..++. +...++---.|.|||.+...++.++....+ .++||++|+..... -...+.+. +++
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~~~--~~ILv~a~tn~A~d~l~~rL~~~--g~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKIHK--DRILVCAPSNVAVDHLAAKLRDL--GLK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHHHHHHT--TCC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhCCC--CeEEEEcCcHHHHHHHHHHHHhh--Ccc
Confidence 4689999999987653 333567778999999999888888765322 58999999976544 44445554 344
Q ss_pred EEEEeCchhH-----------------------HHH---h-hhc-c-----------------CCCCCceEEEEeehhhh
Q 000160 532 ILTYFGSAKE-----------------------RKF---K-RQG-W-----------------LKPNSFHVCITTYRLII 566 (1992)
Q Consensus 532 VL~Y~Gs~ke-----------------------Rk~---k-r~g-w-----------------~k~~~fdVVITSYe~l~ 566 (1992)
++.+.+..+. ++. + ..+ . ......+|+++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 4443321110 000 0 000 0 00123578888877665
Q ss_pred hchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCC
Q 000160 567 QDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQ 616 (1992)
Q Consensus 567 qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQ 616 (1992)
. ..+.. .|++||||||+.+.... .+ +-.+....+++|.|=|-|
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~--~l--i~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPE--CL--IPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHH--HH--HHHTTTBSEEEEEECTTS
T ss_pred h--HHHhc-cCCEEEEECccccchHH--HH--HHHHhCCCEEEEEeCccc
Confidence 2 22444 89999999998875332 11 222244578999999988
No 136
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.96 E-value=0.053 Score=70.09 Aligned_cols=132 Identities=21% Similarity=0.164 Sum_probs=84.1
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCe
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFK 531 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lK 531 (1992)
...|-+.|+.++..+.. ....+|.-..|.|||.++.+++..+.. .+ .++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g--~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAES-LG--LEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHH-TT--CCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHh-cC--CeEEEecCcHHHHHHhHhhhc----cc
Confidence 56789999999988763 456788889999999887777766544 33 579999999877766555321 11
Q ss_pred EEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEe
Q 000160 532 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLT 611 (1992)
Q Consensus 532 VL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLT 611 (1992)
..+++. ..++.. . .+ ..+ .-....+++|||||||.+.. ......+..+....+++|.
T Consensus 256 a~Tih~--------ll~~~~-~-------~~---~~~--~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 ASTVHR--------LLGYGP-Q-------GF---RHN--HLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp EEEHHH--------HTTEET-T-------EE---SCS--SSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEE
T ss_pred HHHHHH--------HHcCCc-c-------hh---hhh--hcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEE
Confidence 111110 000000 0 00 000 11224689999999999853 2333344455677899999
Q ss_pred ccCCCC
Q 000160 612 GTPLQN 617 (1992)
Q Consensus 612 GTPLQN 617 (1992)
|-|-|.
T Consensus 313 GD~~QL 318 (574)
T 3e1s_A 313 GDTDQL 318 (574)
T ss_dssp ECTTSC
T ss_pred eccccc
Confidence 999984
No 137
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.78 E-value=0.047 Score=67.15 Aligned_cols=156 Identities=16% Similarity=0.195 Sum_probs=92.4
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHC---C
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWC---P 528 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL-L~NWe~EfkKw~---P 528 (1992)
..|.|||+..+..|. .. .-.++.=--+.|||..+.+++++.++.. ....+++|.|+-- ...+-..++.++ |
T Consensus 162 ~~L~p~Qk~il~~l~---~~-R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMS---SK-RMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHH---HS-SEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhc---cC-cEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 578999999887663 22 3356666799999998888877766642 2246888999853 333446666553 4
Q ss_pred C-CeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-c--c
Q 000160 529 A-FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-N--S 604 (1992)
Q Consensus 529 ~-lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-~--a 604 (1992)
. ++-.....+ .. ...+ ..++.-.++++ +...++.....++|+||+|.+++. ...+.++... . .
T Consensus 237 ~ll~~~~~~~~-~~----~I~f-~nGs~i~~lsa------~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~ 303 (385)
T 2o0j_A 237 DFLQPGIVEWN-KG----SIEL-DNGSSIGAYAS------SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGR 303 (385)
T ss_dssp TTTSCCEEEEC-SS----EEEE-TTSCEEEEEEC------SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTT
T ss_pred HhhhhhhccCC-cc----EEEe-CCCCEEEEEEC------CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCC
Confidence 3 211000000 00 0011 11222222322 455677788999999999999974 2445554432 2 3
Q ss_pred ceEEEEeccCCCCChHHHHHHHHH
Q 000160 605 KRRILLTGTPLQNDLMELWSLMHF 628 (1992)
Q Consensus 605 ~rRLLLTGTPLQNsL~ELwSLL~F 628 (1992)
..++++++||-..+ -+|.+...
T Consensus 304 ~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 304 RSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp CCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCcEEEEeCCCCch--hHHHHHHH
Confidence 57999999997654 55555443
No 138
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.63 E-value=0.04 Score=73.87 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=92.5
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH-HHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW-ETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW-e~EfkKw~P~lK 531 (1992)
..|-+.|..++...+. +...++---.|.|||.+...++.++... ...++||++|+...... ...+.+. +++
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccc
Confidence 4689999999987653 3345778889999999988888887643 23589999999765443 3334432 344
Q ss_pred EEEEeCchhHH------------------------HHh---h-hc-cC-----------------CCCCceEEEEeehhh
Q 000160 532 ILTYFGSAKER------------------------KFK---R-QG-WL-----------------KPNSFHVCITTYRLI 565 (1992)
Q Consensus 532 VL~Y~Gs~keR------------------------k~k---r-~g-w~-----------------k~~~fdVVITSYe~l 565 (1992)
++.+.+..++. +.. . .+ +. -....+||++|...+
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 44333221100 000 0 00 00 002346888887665
Q ss_pred hhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCC
Q 000160 566 IQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQ 616 (1992)
Q Consensus 566 ~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQ 616 (1992)
.. ..+....|++||||||..+-... .+ +-.+....+++|.|=|-|
T Consensus 507 ~~--~~l~~~~fd~viIDEAsQ~~e~~--~l--i~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 507 GD--PRLAKMQFRSILIDESTQATEPE--CM--VPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp GC--TTTTTCCCSEEEETTGGGSCHHH--HH--HHHTTTBSEEEEEECTTS
T ss_pred CC--hhhhcCCCCEEEEECCCCCCcHH--HH--HHHHhcCCeEEEeccccc
Confidence 42 23556789999999997664332 11 222344578999999988
No 139
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.62 E-value=0.051 Score=70.52 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=88.6
Q ss_pred CCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCC
Q 000160 452 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAF 530 (1992)
Q Consensus 452 k~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS-LL~NWe~EfkKw~P~l 530 (1992)
...|.|||+..+..| .. ....++.---|.|||..+.+++++.++..+ ...+++|.|+- .....-..++.++-.+
T Consensus 161 ~~~l~p~Q~~i~~~l---~~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIM---SS-KRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp BCCCCHHHHHHHHHH---HH-CSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCcCCHHHHHHHHhh---cc-ccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 357999999988765 22 233555567999999988777777666432 33789999984 3333445677665222
Q ss_pred ----eEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhc-c--
Q 000160 531 ----KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-N-- 603 (1992)
Q Consensus 531 ----KVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L-~-- 603 (1992)
+......+.. ...+ +++..+... ..+...++.....++|+||+|.+++.. ..+.++... .
T Consensus 236 p~~~~~~~~~~~~~-----~i~~--~nGs~i~~~-----s~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 236 PDFLQPGIVEWNKG-----SIEL--DNGSSIGAY-----ASSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSG 302 (592)
T ss_dssp CTTTSCCEEEECSS-----EEEE--TTSCEEEEE-----ECCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSS
T ss_pred hHhhccccccCCcc-----EEEe--cCCCEEEEE-----eCCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccC
Confidence 1100000000 0001 122222211 234455677788999999999998853 556665543 2
Q ss_pred cceEEEEeccCCCC
Q 000160 604 SKRRILLTGTPLQN 617 (1992)
Q Consensus 604 a~rRLLLTGTPLQN 617 (1992)
...++++++||-..
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 34799999999655
No 140
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.48 E-value=0.01 Score=53.85 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=38.3
Q ss_pred CCCCChhhhHHHHHHHHhc--------CC-ChhHHHH-HhhccccCccccccccCchhhHHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEY--------GP-NWSLVSD-ILYGMTASGYYRGRYRHPVHCCERFRELI 1646 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~--------g~-nw~l~~~-~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1646 (1992)
..+||++||++||.+|.+| |. .|.-+++ .+ ..|+-.+||+||...+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-----------~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-----------TQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-----------SSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-----------CCCCHHHHHHHHHHHc
Confidence 4689999999999999999 33 3999988 44 4588899999998754
No 141
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.75 E-value=0.015 Score=54.86 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=39.7
Q ss_pred CCCCCCCChhhhHHHHHHHHhcCC----ChhHHHHHhhccccCccccccccCchhhHHHHHHHHH
Q 000160 1587 VPSPDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1647 (1992)
Q Consensus 1587 ~~~~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1647 (1992)
|+..++|+.+|+.+|..-+..|+. +|..|+..+ . .|++.+|+.||..|.+
T Consensus 5 ~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V---~--------gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAV---G--------SRSPEECQRKYMENPR 58 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT---T--------TSCHHHHHHHHHHSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc---C--------CCCHHHHHHHHHHHHh
Confidence 345679999999888666666763 599999977 2 2999999999999843
No 142
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.45 E-value=0.11 Score=67.67 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhc-CCCCcEEEEecCCcHHHHH-HHHHHHCCCCeEE
Q 000160 456 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK-GIWGPHLIVVPTSVMLNWE-TEFLKWCPAFKIL 533 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ek-g~~GP~LIVVPtSLL~NWe-~EfkKw~P~lKVL 533 (1992)
-+.|+.++.-.+. +...|+.-..|.|||.++..++..+.... +...++||++|+.....-. ..+..++..+.+-
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 4789999876553 55678888999999988777777765421 2223789999997655433 3333322111000
Q ss_pred EEeCchhHHHHhhhccCCCCCceEEE-Eeeh--hhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEE
Q 000160 534 TYFGSAKERKFKRQGWLKPNSFHVCI-TTYR--LIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILL 610 (1992)
Q Consensus 534 ~Y~Gs~keRk~kr~gw~k~~~fdVVI-TSYe--~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLL 610 (1992)
...+.... ......|-++ ++.. .+.. .......+++||||||+.+. .......+..+....+++|
T Consensus 227 -----~~~~~~~~---~~~~Tih~ll~~~~~~~~~~~--~~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 227 -----DEQKKRIP---EDASTLHRLLGAQPGSQRLRH--HAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp -----SCCCCSCS---CCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEEE
T ss_pred -----HHHHhccc---hhhhhhHhhhccCCCchHHHh--ccCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCEEEE
Confidence 00000000 0000000000 0000 0000 01122368999999999885 2334445566677889999
Q ss_pred eccCCCCC
Q 000160 611 TGTPLQND 618 (1992)
Q Consensus 611 TGTPLQNs 618 (1992)
.|=|-|-.
T Consensus 295 vGD~~QL~ 302 (608)
T 1w36_D 295 LGDRDQLA 302 (608)
T ss_dssp EECTTSGG
T ss_pred EcchhhcC
Confidence 99998854
No 143
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.28 E-value=0.065 Score=59.10 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 476 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 476 GILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
-++.-.||.|||..++.++..+.. .| .+++|+.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~-~g--~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL-GK--KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-TT--CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CC--CeEEEEeec
Confidence 356778999999888877765543 22 468888887
No 144
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=94.06 E-value=0.025 Score=63.58 Aligned_cols=45 Identities=18% Similarity=0.439 Sum_probs=40.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1645 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1645 (1992)
.++|+++|+.++...+..||-+|..|+..| -.|+..||+..|-..
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~V-----------gTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVI-----------GNKSVVQVKNFFVNY 177 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHH-----------SSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-----------CCCCHHHHHHHHHHH
Confidence 679999999999999999999999999988 339999999887543
No 145
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=93.76 E-value=0.13 Score=65.93 Aligned_cols=129 Identities=19% Similarity=0.146 Sum_probs=81.8
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCe
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFK 531 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~lK 531 (1992)
..+||||...+.-+......+.++|+--.+|.|||+..+.-+ +.. .+++||++|+ .++.||..++.+. +++
T Consensus 6 ~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~--~~~----~~~~~~~~~t~~l~~q~~~~~~~l--~~~ 77 (540)
T 2vl7_A 6 LQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLG--MQL----KKKVLIFTRTHSQLDSIYKNAKLL--GLK 77 (540)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHH--HHH----TCEEEEEESCHHHHHHHHHHHGGG--TCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHH--HhC----CCcEEEEcCCHHHHHHHHHHHHhc--CCc
Confidence 478999999987666555667889999999999997554332 221 2689999999 6788899999885 355
Q ss_pred EEEEeCchhH-----H-----------------------HHhhhccCC----------------CCCceEEEEeehhhhh
Q 000160 532 ILTYFGSAKE-----R-----------------------KFKRQGWLK----------------PNSFHVCITTYRLIIQ 567 (1992)
Q Consensus 532 VL~Y~Gs~ke-----R-----------------------k~kr~gw~k----------------~~~fdVVITSYe~l~q 567 (1992)
+.+..|...- . ......|.. ....+|||++|..+..
T Consensus 78 ~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~ 157 (540)
T 2vl7_A 78 TGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQ 157 (540)
T ss_dssp EEEC---------------------------------------------------------CTTGGGCSEEEEETHHHHS
T ss_pred EEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcC
Confidence 5554443210 0 000001111 1245899999999987
Q ss_pred chh--hhh-------ccCccEEEEcCccccC
Q 000160 568 DSK--VFK-------RKKWKYLILDEAHLIK 589 (1992)
Q Consensus 568 D~~--~f~-------r~~W~~LILDEAH~IK 589 (1992)
+.. .+. .....+|||||||++-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 158 KPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 643 222 1356899999999994
No 146
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=93.75 E-value=0.068 Score=52.74 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=48.2
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhC
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSV 1653 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~ 1653 (1992)
+++||.+|+..|-.||+.||..|-+|+|-+. .. .+ .-|+-..=++||-.+..+....-
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~---~~-~~--~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYD---HQ-QF--KKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSC---TT-TS--CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhc---cC-CC--CCCCHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999762 11 11 24999999999999988876654
No 147
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.41 E-value=0.39 Score=62.40 Aligned_cols=79 Identities=18% Similarity=0.096 Sum_probs=53.6
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcHHH-HHHHHHHHC---
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVMLN-WETEFLKWC--- 527 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~-~GP~LIVVPtSLL~N-We~EfkKw~--- 527 (1992)
..|-+.|+.++. +. ....++---.|.|||.+.+.-++++....+. ...+|+|+++..... -...+.+.+
T Consensus 8 ~~Ln~~Q~~av~-----~~-~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVA-----AP-RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHT-----CC-SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHh-----CC-CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 358899999995 12 2233444459999999999999998876443 357899999865444 455565553
Q ss_pred -CCCeEEEEeC
Q 000160 528 -PAFKILTYFG 537 (1992)
Q Consensus 528 -P~lKVL~Y~G 537 (1992)
..+.|.++|+
T Consensus 82 ~~~~~v~Tfhs 92 (647)
T 3lfu_A 82 QGGMWVGTFHG 92 (647)
T ss_dssp CTTCEEEEHHH
T ss_pred cCCcEEEcHHH
Confidence 2355666654
No 148
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.39 E-value=0.23 Score=56.60 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=27.3
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
..+.-.++.-+||.|||..++.++..+... | ..++|+-|.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g--~kVli~~~~ 49 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA-D--VKYLVFKPK 49 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT-T--CCEEEEEEC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc-C--CEEEEEEec
Confidence 333334678999999999888887766542 2 367777664
No 149
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=93.33 E-value=0.043 Score=53.34 Aligned_cols=60 Identities=18% Similarity=0.472 Sum_probs=47.8
Q ss_pred CCCCChhhhHHHHHHHHhcC-------C---ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhCCCC
Q 000160 1590 PDVWLPQEDAILCAVVHEYG-------P---NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDN 1656 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g-------~---nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~ 1656 (1992)
...|+..|=.+|..+..++- + .|..||+.| .. .|..|+|.||+.+|+.|...|-..-..+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m---~~----~G~~rs~~qC~~K~~nL~k~Yk~~k~~~ 73 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKM---RE----KGFDRSPDMCTDKWRNLLKEFKKAKHHD 73 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH---HH----HHCCCCHHHHHHHHHHHHHHHCSCSSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH---HH----cCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 35899999999988886632 2 599999988 32 4567999999999999999998665543
No 150
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.72 E-value=0.36 Score=53.70 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
++.-.||.|||..++.++..+.. .| ..++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~-~g--~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKI-AK--QKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-CC--CEEEEEEec
Confidence 56778999999888877665542 33 478888887
No 151
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=91.04 E-value=0.43 Score=62.77 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHHHHHHHccCcc-EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLN-GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF 530 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lg-GILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt-SLL~NWe~EfkKw~P~l 530 (1992)
..+.++|..++.-|+.....+.. ..|.--+|.|||+.+..++..+ .+|+|||+|+ .+..||..+|+.|+|..
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~------~~~~lvv~~~~~~A~ql~~el~~~~~~~ 80 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPEN 80 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEecCHHHHHHHHHHHHHHCCCC
Confidence 36788999999876665554432 3566779999999888777654 2489999998 56788999999999876
Q ss_pred eEEEE
Q 000160 531 KILTY 535 (1992)
Q Consensus 531 KVL~Y 535 (1992)
.|..|
T Consensus 81 ~V~~f 85 (664)
T 1c4o_A 81 AVEYF 85 (664)
T ss_dssp EEEEC
T ss_pred eEEEc
Confidence 55544
No 152
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.87 E-value=0.57 Score=61.59 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=59.5
Q ss_pred CCChHHHHHHHHHHHHHHccCcc-EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCC
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLN-GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAF 530 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lg-GILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS-LL~NWe~EfkKw~P~l 530 (1992)
..++.||..++.-|+.....+.. ..|.--+|.|||+.+..++..+ .+|+|||+|.. ...+|..||+.|+|..
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~------~~~~lvv~~~~~~A~~l~~el~~~~~~~ 84 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV------NKPTLVIAHNKTLAGQLYSEFKEFFPNN 84 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------CCCEEEECSSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 56788999999877766555542 4566679999999887776543 24899999985 6778999999999987
Q ss_pred eEEEE
Q 000160 531 KILTY 535 (1992)
Q Consensus 531 KVL~Y 535 (1992)
.|..|
T Consensus 85 ~v~~f 89 (661)
T 2d7d_A 85 AVEYF 89 (661)
T ss_dssp EEEEE
T ss_pred cEEEc
Confidence 66555
No 153
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.53 E-value=0.28 Score=61.27 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=66.6
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCc
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSF 555 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS-LL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~f 555 (1992)
++.--.|.|||...+.++. ..+.|||+|+. +...|...+.+- |. ....
T Consensus 165 ~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~----------~~-----------~~~~-- 213 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANAS----------GI-----------IVAT-- 213 (446)
T ss_dssp EEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTT----------SC-----------CCCC--
T ss_pred EEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhc----------Cc-----------cccc--
Confidence 5666799999976655542 15789999995 566688877432 00 0001
Q ss_pred eEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCC
Q 000160 556 HVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQN 617 (1992)
Q Consensus 556 dVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQN 617 (1992)
.+-+.|++.+......+.....++||||||..+- .....+++.+....+++|.|=|-|-
T Consensus 214 ~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~---~~~l~~l~~~~~~~~vilvGD~~Ql 272 (446)
T 3vkw_A 214 KDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH---TGCVNFLVEMSLCDIAYVYGDTQQI 272 (446)
T ss_dssp TTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC---HHHHHHHHHHTTCSEEEEEECTTSC
T ss_pred cceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC---HHHHHHHHHhCCCCEEEEecCcccc
Confidence 1225566655544333333458999999999773 2333344444334899999999883
No 154
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.43 E-value=1 Score=51.00 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=25.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 514 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS 514 (1992)
++.-.||.|||..+|.++..... .| ..+||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~-~g--~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF-AK--QHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH-TT--CCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-CC--CEEEEEEecc
Confidence 36888999999988887665543 23 4788888763
No 155
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.19 E-value=2.4 Score=49.50 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=25.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEec
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVP 512 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ekg~-~GP~LIVVP 512 (1992)
+.+|.-+.|.|||..+-++...+.+.... .+|++.|-+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 56889999999999888877776553222 234444443
No 156
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.24 E-value=3.4 Score=48.83 Aligned_cols=40 Identities=13% Similarity=-0.056 Sum_probs=26.5
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM 516 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL 516 (1992)
.+-+|.-+.|.|||..+-++...+... ..+++.|-...++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFA 77 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHH
Confidence 467889999999998887777666543 2355544433333
No 157
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=85.09 E-value=4.1 Score=48.72 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHHHccCc---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 455 LREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 455 LRpYQ~~GL~WLvslye~~l---gGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
++|+|...+..|...+.++. ..+|.-+.|.|||..+.++...+.|..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 57889999888887776543 358899999999999999998887754
No 158
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=84.03 E-value=3.3 Score=40.45 Aligned_cols=53 Identities=28% Similarity=0.563 Sum_probs=46.6
Q ss_pred CCCCChhhhHHHHHHHHhcCC---ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhhC
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP---NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSV 1653 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~---nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~ 1653 (1992)
--.|+-++|..|..-+.+-|+ .|.-||..| .-|+|.+-++||+.||.=+....
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L-----------~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQL-----------GNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHCS
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHH-----------ccCCHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999 799999988 34999999999999998776544
No 159
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=82.66 E-value=3.6 Score=47.15 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=24.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
++.-.||.|||...|.++.... +....++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeec
Confidence 5677899999988877655443 233477888776
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.52 E-value=5.3 Score=42.06 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=21.9
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
..+.+|.-+.|.|||..+-++...+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 356788999999999988888777655
No 161
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=82.47 E-value=3.2 Score=54.09 Aligned_cols=88 Identities=14% Similarity=0.214 Sum_probs=49.5
Q ss_pred HHHHHHHHHh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec--ccccc
Q 000160 1000 ELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST--RSGGV 1076 (1992)
Q Consensus 1000 ~L~~LL~kLk-s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLST--rAGG~ 1076 (1992)
.+...|..+. ..+.++|||...-.+++.+...|. .+.+- ...+++...|..++++|. + +--| |+++ .+.++
T Consensus 435 ~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~-~~~v-L~~v~~gsf~E 508 (620)
T 4a15_A 435 RMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-R-DHGT-IFAVSGGRLSE 508 (620)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-T-SCCE-EEEETTSCC--
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-c-CCcE-EEEEecCceec
Confidence 3444444442 235567887777777777776665 23333 444444568999999998 3 3334 4554 48899
Q ss_pred ccCCcc--CCEEEEecCCC
Q 000160 1077 GINLVG--ADTVIFYDSDW 1093 (1992)
Q Consensus 1077 GLNLT~--AdtVIfyD~dW 1093 (1992)
|||+.+ +..||+.-.|+
T Consensus 509 GiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 509 GINFPGNELEMIILAGLPF 527 (620)
T ss_dssp ------CCCCEEEESSCCC
T ss_pred cccCCCCceEEEEEEcCCC
Confidence 999987 67888876654
No 162
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.37 E-value=5.2 Score=42.22 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=21.1
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
..+.+|.-+.|.|||..+-++...+.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445688999999999988877766644
No 163
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.85 E-value=6.8 Score=46.33 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=22.0
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~e 500 (1992)
.+.+|.-+.|.|||..+-++...+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~ 85 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGP 85 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 457889999999999888887777653
No 164
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=80.16 E-value=1.7 Score=54.41 Aligned_cols=55 Identities=18% Similarity=0.416 Sum_probs=44.4
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHH---------HHHHHHHhhhCCC
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERF---------RELIQRYILSVPD 1655 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~---------~~~~~~~~~~~~~ 1655 (1992)
...|+.+|=.++...+..||-||..|+++| .-|++.||+.-| ..+++.|....+.
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~V-----------gTKT~~Qvk~fy~~~kkr~~ld~il~e~e~~~~~ 443 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVI-----------GNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGK 443 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHH-----------SSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHh-----------CCCCHHHHHHHHHHHHHHhChHHHHHHHHHhhCC
Confidence 579999999999999999999999999988 348999998765 3577777665554
No 165
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=78.02 E-value=6.5 Score=42.91 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 456 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
++.....+...+..-......+|.-+.|.|||..+-++...+.+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 55555555544332221224688999999999888777666554
No 166
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=77.87 E-value=4.7 Score=47.48 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=25.8
Q ss_pred CccEEEEcCccccC-C-hhhHHHHHHHhcccceEEEEeccCCC
Q 000160 576 KWKYLILDEAHLIK-N-WKSQRWQTLLNFNSKRRILLTGTPLQ 616 (1992)
Q Consensus 576 ~W~~LILDEAH~IK-N-~~Sq~~qaLl~L~a~rRLLLTGTPLQ 616 (1992)
...+|||||+|.+. . ......+.+-......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 56899999999995 2 11222233333345678888887754
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=77.81 E-value=7.3 Score=43.01 Aligned_cols=39 Identities=15% Similarity=-0.084 Sum_probs=26.3
Q ss_pred HHHHHHHHHHc--cCccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 461 IGLDWLVTMYE--KRLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 461 ~GL~WLvslye--~~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
..+.++..... ...+-+|.-+.|.|||..+-++...+..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444444433 3456688999999999988777666554
No 168
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=77.75 E-value=11 Score=42.88 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=23.6
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 514 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS 514 (1992)
++.-.||.|||...|-.+..+. ..+ ..+||+-|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~-~~g--~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGI-YAK--QKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH-HTT--CCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHH-HcC--CceEEEEecc
Confidence 5677899999977776654433 333 4678887753
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.54 E-value=2.1 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=18.9
Q ss_pred cCccEEEEcCCCChHHHHHHHHHHH
Q 000160 472 KRLNGILADEMGLGKTIMTIAMLAH 496 (1992)
Q Consensus 472 ~~lgGILADEMGLGKTIQtIALLa~ 496 (1992)
...+.+|.-+.|.|||..+-++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456688999999999877666443
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=77.25 E-value=15 Score=39.35 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHc-----cCccEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000160 456 REYQHIGLDWLVTMYE-----KRLNGILADEMGLGKTIMTIAMLAHLACEKG 502 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye-----~~lgGILADEMGLGKTIQtIALLa~La~ekg 502 (1992)
.+.|...+..+..... .+.+-+|.-..|.|||..+-+++..+....|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 4678888888776553 3445677889999999888777666653443
No 171
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.81 E-value=4.6 Score=48.38 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=29.9
Q ss_pred hHHHHHHHH-HHHHHHcc--CccEEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 456 REYQHIGLD-WLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 456 RpYQ~~GL~-WLvslye~--~lgGILADEMGLGKTIQtIALLa~La~e 500 (1992)
|+.+..-+. |+...... ..+.+|.-+.|.|||..+-++...+...
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 666666665 33333222 3346889999999999888877766553
No 172
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=76.56 E-value=2.1 Score=42.45 Aligned_cols=42 Identities=17% Similarity=0.371 Sum_probs=37.7
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERF 1642 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~ 1642 (1992)
.+.||++|-.+.+.-...||-||.+|+..| ..|+..+|-+=|
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l-----------~~Kt~~~cV~~Y 84 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFL-----------ERKTVAECVLYY 84 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTC-----------TTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHc-----------CCCCHHHHHHHH
Confidence 689999999999999999999999999987 559999998655
No 173
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=75.66 E-value=3.4 Score=46.16 Aligned_cols=41 Identities=17% Similarity=0.068 Sum_probs=25.8
Q ss_pred ccCccEEEEcCccccCC---hhhHHHHHHHhcccc----eEEEEeccC
Q 000160 574 RKKWKYLILDEAHLIKN---WKSQRWQTLLNFNSK----RRILLTGTP 614 (1992)
Q Consensus 574 r~~W~~LILDEAH~IKN---~~Sq~~qaLl~L~a~----rRLLLTGTP 614 (1992)
..+-.+|||||||++-+ .....-+.+.+|... .-++|+|.|
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 34467999999999932 222223455566433 357888887
No 174
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=75.15 E-value=20 Score=38.54 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ 499 (1992)
+.+|.-+.|.|||..+-++...+.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4788999999999888777766544
No 175
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=76.71 E-value=0.62 Score=43.09 Aligned_cols=48 Identities=21% Similarity=0.541 Sum_probs=42.4
Q ss_pred CCCChhhhHHHHHHHHhcCC---ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHh
Q 000160 1591 DVWLPQEDAILCAVVHEYGP---NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI 1650 (1992)
Q Consensus 1591 ~~w~~~ed~~l~~~v~~~g~---nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~ 1650 (1992)
-.|+-+||..|..-+.+-|+ -|.-+|..| -|+|.|-.+||+.|+.=+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L------------nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL------------DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 57999999999999999999 699999866 2899999999999986544
No 176
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=73.97 E-value=10 Score=44.07 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 456 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
++.....+..++..- ...+.+|.-+.|.|||..+-++...+.+
T Consensus 30 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 455555554333321 1224788999999999988887777654
No 177
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=73.90 E-value=3.3 Score=38.75 Aligned_cols=43 Identities=14% Similarity=0.400 Sum_probs=37.5
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHH-HhhccccCccccccccCchhhHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSD-ILYGMTASGYYRGRYRHPVHCCERFR 1643 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~-~~~~~~~~~~~~~~~r~~~~c~~r~~ 1643 (1992)
.++||++|=.+...=+..||.||.+|+. .| ..|++.+|..=|-
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v-----------~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFL-----------PWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTC-----------SSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHc-----------CCCCHHHHHHHHH
Confidence 6799999999999999999999999998 56 3488999987664
No 178
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.27 E-value=12 Score=42.79 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=21.0
Q ss_pred HHHHHHccCccEEEEcCCCChHHHHHHHHH
Q 000160 465 WLVTMYEKRLNGILADEMGLGKTIMTIAML 494 (1992)
Q Consensus 465 WLvslye~~lgGILADEMGLGKTIQtIALL 494 (1992)
.+........+.+|.-+.|.|||..+-++.
T Consensus 21 ~~~~~~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 21 QVSHLAPLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp HHHHHTTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 333333456778999999999997665544
No 179
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=72.90 E-value=8.4 Score=43.04 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=23.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
++.-.||+|||...|-.+...... + ..+|++-|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~-~--~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIA-Q--YKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT-T--CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc-C--CeEEEEccc
Confidence 557789999997666665554432 2 467777776
No 180
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.73 E-value=5.6 Score=48.49 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=25.4
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW 519 (1992)
..+.+|.-+.|.|||..+-++...+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 3567889999999998776664332 2366666665555443
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=70.44 E-value=5.1 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.3
Q ss_pred ccEEEEcCCCChHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAH 496 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~ 496 (1992)
.|.+|.-+.|.|||..+-++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35688999999999888776554
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=70.00 E-value=6 Score=41.20 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=21.3
Q ss_pred HHHHHHccCccEEEEcCCCChHHHHHHHH
Q 000160 465 WLVTMYEKRLNGILADEMGLGKTIMTIAM 493 (1992)
Q Consensus 465 WLvslye~~lgGILADEMGLGKTIQtIAL 493 (1992)
++........+.+|.-+.|.|||..+-++
T Consensus 16 ~~~~~a~~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 16 RLQQLSETDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp HHHHHTTCCSCEEEESSTTSSHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCCCHHHHHHHH
Confidence 33333456678899999999999877654
No 183
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.40 E-value=4.3 Score=37.22 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=36.5
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHH-HhhccccCccccccccCchhhHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSD-ILYGMTASGYYRGRYRHPVHCCERF 1642 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~-~~~~~~~~~~~~~~~r~~~~c~~r~ 1642 (1992)
...|+++|=.+...=+..||-||..|+. +| ..|+..+|..=|
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v-----------~~Kt~~~~v~fY 51 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGKNFFRIRKELL-----------PNKETGELITFY 51 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCSCHHHHHHHSC-----------TTSCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCccHHHHHHHHc-----------CCCcHHHHHHHH
Confidence 6799999999999999999999999997 56 458899997655
No 184
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=69.08 E-value=7.2 Score=46.47 Aligned_cols=45 Identities=29% Similarity=0.274 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHH---ccCccEEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 456 REYQHIGLDWLVTMY---EKRLNGILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 456 RpYQ~~GL~WLvsly---e~~lgGILADEMGLGKTIQtIALLa~La~e 500 (1992)
|+.+..-+.-++... ....+.+|.-..|.|||..+-++...+...
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 566666554333222 334567889999999999888877766543
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=68.94 E-value=21 Score=44.47 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=20.3
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
.+.+|.-+.|+|||..+-++...+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45688999999999888776665544
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=68.03 E-value=5.2 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.6
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~L 497 (1992)
.|.+|.-+.|.|||..+-++...+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 466889999999999887776654
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.32 E-value=7.4 Score=46.51 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHccCc----cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 456 REYQHIGLDWLVTMYEKRL----NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~l----gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
++.++..+.++......+. +.+|.-+.|.|||..+-++...+.+ ..|++.+...
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~----~~~~~~~~~~ 106 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP----DTPFTAIAGS 106 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS----SCCEEEEEGG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc----cCCcccccch
Confidence 6777777777776665443 5688999999999988887766632 2365555443
No 188
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.27 E-value=10 Score=43.98 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=20.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ 499 (1992)
+.+|.-+.|.|||..+-++...+.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4788999999999988888777655
No 189
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=65.57 E-value=14 Score=41.74 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=23.8
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV 515 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL 515 (1992)
.+.+|.-+.|.|||..+-++...+ + .|++.|....+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~----~--~~~~~~~~~~~ 75 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA----Q--VPFLAMAGAEF 75 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH----T--CCEEEEETTTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----C--CCEEEechHHH
Confidence 456789999999998877765543 1 35555544443
No 190
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.43 E-value=19 Score=41.62 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=19.8
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
..+.+|.-+.|.|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999998877665554
No 191
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=65.12 E-value=29 Score=41.21 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHh
Q 000160 456 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACE 500 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~e 500 (1992)
++.....+...+..-......+|.-+.|.|||..+-++...+.|.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 455555554443321112235789999999999888887776554
No 192
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=64.92 E-value=27 Score=40.00 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=18.2
Q ss_pred ccEEEEcCCCChHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAH 496 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~ 496 (1992)
.+.+|.-+.|.|||..+-++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999888776554
No 193
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=63.49 E-value=2 Score=40.55 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=34.4
Q ss_pred CCCCChhhhHHHHHHHHhcCC----ChhHHHHHhhccccCccccccccCchhhHHHHH
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYRGRYRHPVHCCERFR 1643 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~ 1643 (1992)
+++||.+|+.+|-.-+--|+. .|..|+..| + .|++..|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V---p--------GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV---K--------GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS---C--------SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc---C--------CCCHHHHHHHHH
Confidence 678999999888877777875 499999977 2 289999998875
No 194
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=61.78 E-value=12 Score=36.94 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=46.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhh
Q 000160 1590 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILS 1652 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~ 1652 (1992)
.+.||-+|-..|-.||++|+-.|-.|.|-... . ....|+...=++||-.+..+....
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~---~---~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH---Q---QFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCT---T---TSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeecccc---C---CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999996511 0 113599999999999988876654
No 195
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=59.93 E-value=24 Score=45.66 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=32.4
Q ss_pred HccCccEEEEcCCCChHHHHHHHHHHHHHHhc-----------CCCCcEEEEecCCcHHHH
Q 000160 470 YEKRLNGILADEMGLGKTIMTIAMLAHLACEK-----------GIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 470 ye~~lgGILADEMGLGKTIQtIALLa~La~ek-----------g~~GP~LIVVPtSLL~NW 519 (1992)
...+...+|.-+.|.|||..+-++...+.+.. ....|.+.+||.....+-
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~ 117 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRI 117 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHH
Confidence 34567889999999999977766555432211 112567778887665543
No 196
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=59.72 E-value=49 Score=39.31 Aligned_cols=43 Identities=26% Similarity=0.216 Sum_probs=27.4
Q ss_pred hHHHHHHHH-HHHHHHc--cCc--cEEEEcCCCChHHHHHHHHHHHHH
Q 000160 456 REYQHIGLD-WLVTMYE--KRL--NGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 456 RpYQ~~GL~-WLvslye--~~l--gGILADEMGLGKTIQtIALLa~La 498 (1992)
|+.+..-+. |+..... .+. +.+|.-..|.|||..+-+++..+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 666666654 4433222 223 568899999999988877665553
No 197
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=59.53 E-value=9.5 Score=42.67 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred CCCChhhhHHHHHHHHhcC-CChhHHHHHh-hccccCcccc--ccccCchhhHHHHHHHHHHH
Q 000160 1591 DVWLPQEDAILCAVVHEYG-PNWSLVSDIL-YGMTASGYYR--GRYRHPVHCCERFRELIQRY 1649 (1992)
Q Consensus 1591 ~~w~~~ed~~l~~~v~~~g-~nw~l~~~~~-~~~~~~~~~~--~~~r~~~~c~~r~~~~~~~~ 1649 (1992)
..|+..||..|+.-||.|| +||+.|-+=. .|+..=-+.. .+-+..++..-|-..|+.-.
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 4799999999999999999 8999886622 1222111111 23455668888866666543
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.06 E-value=19 Score=44.54 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=31.6
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 521 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~ 521 (1992)
..|.+|.-..|.|||+.+=|+..++. -|++.|..+.++..|.-
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEEGGGGSCSSTT
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC------CCceEEEhHHhhccccc
Confidence 56778999999999998877765542 26777777777765543
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=57.18 E-value=32 Score=40.70 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHccCc--cEEEEcCCCChHHHHHHHHHH
Q 000160 459 QHIGLDWLVTMYEKRL--NGILADEMGLGKTIMTIAMLA 495 (1992)
Q Consensus 459 Q~~GL~WLvslye~~l--gGILADEMGLGKTIQtIALLa 495 (1992)
|...+..|.....++. .-||.-+.|.|||-.+.++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444555555444433 568899999999987766654
No 200
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=56.99 E-value=7.2 Score=40.58 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=17.9
Q ss_pred ccCccEEEEcCCCChHHHHHHHH
Q 000160 471 EKRLNGILADEMGLGKTIMTIAM 493 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIAL 493 (1992)
....+-+|.-+.|.|||..+-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45678899999999999765443
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=56.38 E-value=15 Score=43.06 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=18.6
Q ss_pred CccEEEEcCCCChHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAH 496 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~ 496 (1992)
+.+.+|.-+.|.|||..+-++...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 456688999999999887666543
No 202
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=55.89 E-value=36 Score=45.55 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=67.3
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHH----HHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000160 993 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDI----LEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1068 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDI----Le~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfL 1068 (1992)
..|||--+....+......|.++||.+.......- +..++...|+++..++|+++..+|..++..+.. +.+.|+|
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~-g~~~IvV 476 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN-GQIDVVI 476 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS-SCCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc-CCCCEEE
Confidence 46899766555554444567899999988665543 334444458999999999999999999998875 4566665
Q ss_pred EeccccccccCCccCCEEEEec
Q 000160 1069 LSTRSGGVGINLVGADTVIFYD 1090 (1992)
Q Consensus 1069 LSTrAGG~GLNLT~AdtVIfyD 1090 (1992)
.+.......+++...+.||+=+
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEES
T ss_pred ECHHHHhhhhhccCCceEEecc
Confidence 5554444456777776666533
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=55.77 E-value=12 Score=44.62 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=24.6
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM 516 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL 516 (1992)
.|.+|.-+.|.|||..+-++...+ ...+++.|....++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLV 83 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHH
Confidence 456789999999998887766543 12345545444443
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=55.75 E-value=21 Score=44.38 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=23.4
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML 517 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~ 517 (1992)
.|.+|.-..|.|||..+-++...+ ...+++.|....++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVS 206 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHh
Confidence 456889999999998877665543 123555555554443
No 205
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.73 E-value=22 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=18.9
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~L 497 (1992)
.+.+|.-+.|.|||..+-++...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 466889999999998877765544
No 206
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=54.71 E-value=18 Score=42.80 Aligned_cols=46 Identities=26% Similarity=0.180 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHH---ccCccEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000160 456 REYQHIGLDWLVTMY---EKRLNGILADEMGLGKTIMTIAMLAHLACEK 501 (1992)
Q Consensus 456 RpYQ~~GL~WLvsly---e~~lgGILADEMGLGKTIQtIALLa~La~ek 501 (1992)
|+.+...+.-++... ..+.+.+|.-..|.|||..+-+++..+....
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 666666654333221 2244568889999999988877777665543
No 207
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=54.06 E-value=14 Score=42.87 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ 499 (1992)
+.+|.-+.|.|||..+-++...+.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcC
Confidence 4788999999999888887776644
No 208
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.98 E-value=39 Score=39.95 Aligned_cols=42 Identities=14% Similarity=0.359 Sum_probs=25.2
Q ss_pred cCccEEEEcCccccCChh-hHHHHHHHhcccceEEEEeccCCC
Q 000160 575 KKWKYLILDEAHLIKNWK-SQRWQTLLNFNSKRRILLTGTPLQ 616 (1992)
Q Consensus 575 ~~W~~LILDEAH~IKN~~-Sq~~qaLl~L~a~rRLLLTGTPLQ 616 (1992)
.++.+|||||+|.+-... ....+.+.......+++++.+-..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 368899999999964221 123333444455667777766444
No 209
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=53.72 E-value=17 Score=47.53 Aligned_cols=69 Identities=17% Similarity=0.047 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcHHH-HHHHHHHHCC
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVMLN-WETEFLKWCP 528 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg-~~GP~LIVVPtSLL~N-We~EfkKw~P 528 (1992)
.|-+-|+.+|.. .....++---.|.|||.+.+.-++++....+ ....+|+|+.+.-..+ -...+.+.++
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478899999864 1334455567999999999999999887655 3457899998865444 4555666553
No 210
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=52.90 E-value=18 Score=43.65 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=18.7
Q ss_pred CccEEEEcCCCChHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAH 496 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~ 496 (1992)
..+.+|.-+.|.|||..+-++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456688999999999888766543
No 211
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=52.01 E-value=52 Score=39.80 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=65.9
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000160 993 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1069 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLL 1069 (1992)
..+||--...-.+..+...+.++||.+.......-+...+.. .|+++..+.|+++..+|...+..+... ...|++.
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv~ 123 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVF 123 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEEE
Confidence 468998754444444446788999999998887777777766 688999999999998888888888753 3556666
Q ss_pred ecccccc---ccCCccCCEEEE
Q 000160 1070 STRSGGV---GINLVGADTVIF 1088 (1992)
Q Consensus 1070 STrAGG~---GLNLT~AdtVIf 1088 (1992)
+....-. -+++...+.||+
T Consensus 124 Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 124 STQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EHHHHHHCHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHHHhccccccEEEE
Confidence 6543311 134445555554
No 212
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=51.04 E-value=82 Score=37.61 Aligned_cols=44 Identities=5% Similarity=-0.118 Sum_probs=30.7
Q ss_pred hHHHHHHHH-HHHHHHc--cCccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 456 REYQHIGLD-WLVTMYE--KRLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 456 RpYQ~~GL~-WLvslye--~~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
|+-|..-+. +|..... .+.+-+|.-..|.|||.++-+++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 666666665 3443332 2334578899999999999988887754
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=49.76 E-value=50 Score=43.76 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.4
Q ss_pred cCccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 472 KRLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 472 ~~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
...|.+|.-+.|.|||..+-++...+.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999988887776655
No 214
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.14 E-value=26 Score=40.55 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=24.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 511 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVV 511 (1992)
+.+|.-+.|.|||..+-++...+.+. .+|++.|-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEee
Confidence 46889999999998887776665432 24655553
No 215
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=48.25 E-value=32 Score=40.49 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=26.9
Q ss_pred ccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 000160 471 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV 515 (1992)
Q Consensus 471 e~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL 515 (1992)
....+.+|.-+.|.|||..+-++..... ...+|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~---~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA---RSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS---CSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc---ccCCCeEEEeCCCC
Confidence 4566789999999999987755543321 22356666644444
No 216
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=47.48 E-value=46 Score=33.10 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000160 1003 ILLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1068 (1992)
Q Consensus 1003 ~LL~kLks~G~KVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfL 1068 (1992)
..++++. ..++|+||+. +-........+|..+|+.|..++=....+.|+.+.+......-..|||
T Consensus 9 ~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 9 DTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred HHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 3444443 3569999998 577889999999999999988876556666666655544333333444
No 217
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=47.32 E-value=1.4e+02 Score=31.93 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=62.9
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe--cCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCceE
Q 000160 480 DEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV--PTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHV 557 (1992)
Q Consensus 480 DEMGLGKTIQtIALLa~La~ekg~~GP~LIVV--PtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fdV 557 (1992)
---|.|||..++.|...++. .| .++|+|= |..-+..|... ....+++
T Consensus 9 ~kgG~GKTt~a~~la~~la~-~g--~~vlliD~D~~~~~~~~~~~----------------------------~~~~~~~ 57 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSR-SG--YNIAVVDTDPQMSLTNWSKA----------------------------GKAAFDV 57 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHH-TT--CCEEEEECCTTCHHHHHHTT----------------------------SCCSSEE
T ss_pred CCCCccHHHHHHHHHHHHHH-CC--CeEEEEECCCCCCHHHHHhc----------------------------CCCCCcE
Confidence 45689999999999888876 34 3677774 55555555430 0112444
Q ss_pred EEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEEEEeccCCCCChHHHHHHHHHh
Q 000160 558 CITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFL 629 (1992)
Q Consensus 558 VITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL 629 (1992)
+-.....+......+. ..+++||+|=.-.+ + .....++. .+.. +++--+|-..+ ..+..++.++
T Consensus 58 ~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~-~---~~~~~~l~-~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 58 FTAASEKDVYGIRKDL-ADYDFAIVDGAGSL-S---VITSAAVM-VSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp EECCSHHHHHTHHHHT-TTSSEEEEECCSSS-S---HHHHHHHH-HCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred EecCcHHHHHHHHHhc-CCCCEEEEECCCCC-C---HHHHHHHH-HCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 4443344444444443 35899999977655 2 22222222 2344 44444565556 6666666665
No 218
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=46.25 E-value=53 Score=38.28 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHH
Q 000160 456 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAML 494 (1992)
Q Consensus 456 RpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALL 494 (1992)
|+.+..-|.-++. .+...+|.-..|.|||..+-.++
T Consensus 17 R~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 17 REEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp CHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHH
Confidence 6776666654333 24566888999999996655444
No 219
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=45.24 E-value=22 Score=44.28 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=40.0
Q ss_pred HHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH
Q 000160 462 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE 522 (1992)
Q Consensus 462 GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~E 522 (1992)
+|+.+..-+..+.-.||+-..|.|||.-++.++.+.+...| .|+|++..---..++...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE~~~~~l~~R 247 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLEMPAAQLTLR 247 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSSCHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECCCCHHHHHHH
Confidence 46666543444555689999999999999888887765332 488888765444444433
No 220
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=44.39 E-value=54 Score=32.85 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=41.0
Q ss_pred CCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000160 1011 DGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1068 (1992)
Q Consensus 1011 ~G~KVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfL 1068 (1992)
..++|+||+. +-........+|..+|+.|..+|=....+.|+.+.+.-....-..|||
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi 77 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV 77 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence 3579999994 567788889999999999988876666666666655443333334444
No 221
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=44.31 E-value=72 Score=32.47 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=43.9
Q ss_pred CCeEEEEeC------chHHHHHHHHHHHHcCCc---EEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000160 1012 GHRALIFTQ------MTKMLDILEEFISLYGYT---YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1075 (1992)
Q Consensus 1012 G~KVLIFSQ------~t~mLDILe~~L~~~Gi~---y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG 1075 (1992)
.++|+||+. +-........+|+.+|+. |..++=....+-|+.+.+......-..|||-....||
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~~iGG 87 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGG 87 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETTEEEES
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEec
Confidence 569999998 567888889999999998 8777766666666666555443333345543333444
No 222
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=44.13 E-value=25 Score=44.43 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=18.0
Q ss_pred cCccEEEEcCCCChHHHHHHHHH
Q 000160 472 KRLNGILADEMGLGKTIMTIAML 494 (1992)
Q Consensus 472 ~~lgGILADEMGLGKTIQtIALL 494 (1992)
...+.+|.-+.|.|||..+-++.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHH
Confidence 34567889999999998776653
No 223
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=44.05 E-value=32 Score=36.21 Aligned_cols=26 Identities=23% Similarity=0.098 Sum_probs=18.9
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La 498 (1992)
+.+-+|.-..|.|||..+-++...+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44567788999999987766655443
No 224
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=43.99 E-value=25 Score=40.30 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=24.4
Q ss_pred ChhHHHHHhhccccCccccccccCchhhHHHHHHHHHHHhhh
Q 000160 1611 NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILS 1652 (1992)
Q Consensus 1611 nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~ 1652 (1992)
-|..+++.. -.|+..+-|.||+.++..+.+.
T Consensus 173 ~fk~ia~~~-----------P~HT~~SWRdRyrKfl~~~gi~ 203 (246)
T 1ign_A 173 FFKHFAEEH-----------AAHTENAWRDRFRKFLLAYGID 203 (246)
T ss_dssp HHHHHHHHT-----------TTSCHHHHHHHHHHTHHHHCHH
T ss_pred HHHHHHHHC-----------CCCChhhHHHHHHHHHhhcChH
Confidence 588888866 3488999999999998776543
No 225
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=43.05 E-value=20 Score=41.97 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=18.9
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~L 497 (1992)
.+.+|.-..|.|||..+-++...+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 455778999999999887776655
No 226
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=42.38 E-value=67 Score=39.94 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000160 462 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 462 GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW 519 (1992)
+|+.+..-+..+.-.+|+-..|.|||.-++.++.+++...| .+++++..---..++
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~E~s~~~l 247 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSLEMSAQQL 247 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEESSSCHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHHHH
Confidence 46666644455556789999999999999888887765433 388888754333343
No 227
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=42.33 E-value=60 Score=38.98 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=19.1
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
..+-+|.-++|.|||..+-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999998776665443
No 228
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=42.11 E-value=88 Score=37.46 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHH-HHH-c----cCccEEE--EcCCCChHHHHHHHHHHHHHH
Q 000160 456 REYQHIGLDWLV-TMY-E----KRLNGIL--ADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 456 RpYQ~~GL~WLv-sly-e----~~lgGIL--ADEMGLGKTIQtIALLa~La~ 499 (1992)
|+.+..-+.-++ ... . ...+.+| .-..|.|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 566666665333 322 2 2234466 689999999988777766654
No 229
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=42.07 E-value=18 Score=41.93 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=18.4
Q ss_pred CccEEEEcCCCChHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAH 496 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~ 496 (1992)
..+.+|.-+.|.|||..+-++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456688999999999877666543
No 230
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=40.17 E-value=70 Score=31.21 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHHhhCCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEE
Q 000160 1003 ILLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLF 1067 (1992)
Q Consensus 1003 ~LL~kLks~G~KVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVf 1067 (1992)
..+..+.. .++|+||+. +-.....+..+|..+|+.|..++=......|+.+...+.. ..+.++
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~v 76 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW-PTYPQL 76 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC-CSSCEE
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC-CCCCeE
Confidence 34444444 447999984 5567888889999999999988877777777777776654 344343
No 231
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=39.41 E-value=30 Score=35.79 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=37.9
Q ss_pred EEEEeCchHHH-------HHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHh
Q 000160 1015 ALIFTQMTKML-------DILEEFISLYGYTYMRLDGSTQPEERQTLMQRFN 1059 (1992)
Q Consensus 1015 VLIFSQ~t~mL-------DILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN 1059 (1992)
|.|||...... ..+..+|...|+.|-.+|=++..+.|+.++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 56777655433 5788999999999999999999999999999984
No 232
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=39.09 E-value=92 Score=31.94 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEeC------chHHHHHHHHHHHHcCC-cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000160 999 QELAILLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGY-TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1071 (1992)
Q Consensus 999 q~L~~LL~kLks~G~KVLIFSQ------~t~mLDILe~~L~~~Gi-~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLST 1071 (1992)
+.+..++. .++|+||+- +-.+.......|+..|+ .|..++=....+-|+.+.+.-+...=..|||=..
T Consensus 11 e~i~~~i~-----~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~ 85 (118)
T 2wul_A 11 EQLDALVK-----KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGE 85 (118)
T ss_dssp HHHHHHHH-----HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred HHHHHHHh-----cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCE
Confidence 34455553 369999975 34567777788888898 4888877777777777766655544455666555
Q ss_pred cccc
Q 000160 1072 RSGG 1075 (1992)
Q Consensus 1072 rAGG 1075 (1992)
..||
T Consensus 86 ~IGG 89 (118)
T 2wul_A 86 FVGG 89 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 5555
No 233
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=39.04 E-value=91 Score=31.70 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=40.6
Q ss_pred CCeEEEEeC------chHHHHHHHHHHHHcCCc-EEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000160 1012 GHRALIFTQ------MTKMLDILEEFISLYGYT-YMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1068 (1992)
Q Consensus 1012 G~KVLIFSQ------~t~mLDILe~~L~~~Gi~-y~RLDGsts~eqRq~lIerFN~D~~ifVfL 1068 (1992)
.++|+||+. +-........+|+.+|+. |..++=....+-|+.+.+......-..|||
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vfI 82 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYL 82 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEEE
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEEE
Confidence 369999998 677888999999999995 888876666666666655444333333443
No 234
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.01 E-value=39 Score=42.46 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=29.0
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW 519 (1992)
..|.+|.-..|.|||+.+=|+...+. -|++.|....++..|
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIGSELVQKY 283 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCCCS
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEhHHhhccc
Confidence 45667889999999998877665542 266666666666544
No 235
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=38.59 E-value=37 Score=44.92 Aligned_cols=67 Identities=18% Similarity=0.054 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcHHH-HHHHHHHH
Q 000160 454 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVMLN-WETEFLKW 526 (1992)
Q Consensus 454 ~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~-~GP~LIVVPtSLL~N-We~EfkKw 526 (1992)
.|-+-|+.+|.. .....++---.|.|||.+.+.-++++....+. ...+|+|+.+.-..+ -...+.+.
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 588999999864 12344444569999999999999999876553 356899998865443 33334443
No 236
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=37.85 E-value=22 Score=41.67 Aligned_cols=26 Identities=35% Similarity=0.703 Sum_probs=24.4
Q ss_pred CCChhhhHHHHHHHHhcCC-ChhHHHH
Q 000160 1592 VWLPQEDAILCAVVHEYGP-NWSLVSD 1617 (1992)
Q Consensus 1592 ~w~~~ed~~l~~~v~~~g~-nw~l~~~ 1617 (1992)
.|+..||..|+.=||.||= ||+.|-+
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 8999999999999999996 9999865
No 237
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=37.38 E-value=23 Score=49.58 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=35.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN 518 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N 518 (1992)
.-|+|- .|.|||.+.+.-|+++........++|+|||....-+
T Consensus 4 ~lV~ag-AGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt 46 (1166)
T 3u4q_B 4 EFLVGR-SGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFL 46 (1166)
T ss_dssp EEEEEC-TTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHH
T ss_pred EEEEeC-CCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHH
Confidence 346665 8999999999999999876544578999999988766
No 238
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=36.39 E-value=61 Score=40.84 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.3
Q ss_pred ccEEEEcCCCChHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLA 495 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa 495 (1992)
.|.+|.-+.|.|||..+=++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4668899999999987766544
No 239
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=35.98 E-value=81 Score=37.72 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=24.0
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 513 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPt 513 (1992)
..+.+|.-+.|.|||..+-++...+ ..|++.|-.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~ 85 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL------DVPFTMADAT 85 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechH
Confidence 4567889999999998776665443 2466555443
No 240
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=35.97 E-value=46 Score=37.99 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=31.4
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEE-Ee-cCCcHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLI-VV-PTSVMLNWET 521 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LI-VV-PtSLL~NWe~ 521 (1992)
.++-++.--.|.|||..++.+...++. .|. .++| .+ |-.-...|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~-~G~--~V~v~d~D~q~~~~~~al 53 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLR-QGV--RVMAGVVETHGRAETEAL 53 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH-TTC--CEEEEECCCTTCHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH-CCC--CEEEEEeCCCCChhHHHH
Confidence 456788999999999999998887764 443 3443 33 4445555653
No 241
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=35.80 E-value=54 Score=41.39 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=46.6
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEe
Q 000160 1010 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFY 1089 (1992)
Q Consensus 1010 s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfy 1089 (1992)
..|.||||.+....-.+.|...|..+|+....++... .+ ..+.+.+.+ .....|.-+..+..||+-
T Consensus 380 ~~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~----------~~-~~g~v~i~~---g~L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 380 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EA-SDRGRYLMI---GAAEHGFVDTVRNLALIC 445 (483)
T ss_dssp HCCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGG----------GC-CTTCEEEEE---SCCCSCEEETTTTEEEEE
T ss_pred hCCCeEEEEeCChHHHHHHHHHHHHcCCCceecCchh----------hc-CCCcEEEEE---cccccCcccCCCCEEEEE
Confidence 3478999999888888888888888898765553311 11 224444332 345678888888888887
Q ss_pred cCC
Q 000160 1090 DSD 1092 (1992)
Q Consensus 1090 D~d 1092 (1992)
+.+
T Consensus 446 E~e 448 (483)
T 3hjh_A 446 ESD 448 (483)
T ss_dssp HHH
T ss_pred chH
Confidence 643
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=34.43 E-value=50 Score=39.85 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=37.0
Q ss_pred HHHHHHHH--HHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000160 461 IGLDWLVT--MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 461 ~GL~WLvs--lye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW 519 (1992)
.+|++++. -+..+.-.+|+-..|.|||..++.+++..... .+++++|.-.....++
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH
Confidence 35666654 33344445778889999999999888777543 2577777655444443
No 243
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.42 E-value=80 Score=42.57 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=21.6
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLAC 499 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ 499 (1992)
..|-+|.-+.|.|||..+-++...+.+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 446788999999999988877776654
No 244
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=33.70 E-value=50 Score=40.20 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=39.2
Q ss_pred HHHHHHH--HHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000160 462 GLDWLVT--MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 462 GL~WLvs--lye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW 519 (1992)
+|++++. -+..+.-.+|+-..|.|||..++.+++..+.. + +++++|.......+|
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g--~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-G--GTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T--CCEEEEESSCCCCHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-C--CeEEEEECCCChhHH
Confidence 5677664 33444556788899999999999988877543 2 578888776655555
No 245
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=33.10 E-value=2e+02 Score=30.59 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH
Q 000160 995 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS 1033 (1992)
Q Consensus 995 SgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~ 1033 (1992)
..++....+|+.+....|+||+|++.-...+..|-..|=
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW 60 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALW 60 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHh
Confidence 357888899999999999999999999999999999993
No 246
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.98 E-value=54 Score=40.92 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLA 495 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa 495 (1992)
+.||.-+.|.|||..+-++..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578999999999977655443
No 247
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=32.80 E-value=43 Score=38.57 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=29.5
Q ss_pred cCccEEEEcCCCChHHHHHHHHHHHHHHhcC---------CCCcEEEEecCCcHHHH
Q 000160 472 KRLNGILADEMGLGKTIMTIAMLAHLACEKG---------IWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 472 ~~lgGILADEMGLGKTIQtIALLa~La~ekg---------~~GP~LIVVPtSLL~NW 519 (1992)
.+.-.+|+-..|.|||..+..++..+. .| ..++++++.--....+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~~~~ 83 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPPTAI 83 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCHHHH
Confidence 344456777899999998888777554 23 13567777655444443
No 248
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=32.36 E-value=7.2 Score=44.53 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=19.0
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
..|.+|.-+.|.|||..+-++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3456788899999998887765543
No 249
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=31.99 E-value=1.4e+02 Score=41.79 Aligned_cols=95 Identities=8% Similarity=0.039 Sum_probs=67.1
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHH----HcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000160 993 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1068 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~----~~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfL 1068 (1992)
..+||-.+....+-.....|.+|||.+..+....-....+. ..++++..+.|..+..++...+..... +.+.|+|
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~-g~~dIvV 711 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE-GKIDILI 711 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT-TCCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc-CCCCEEE
Confidence 56899876655554455678899999998876654444443 346889999999999999888888864 5566766
Q ss_pred EeccccccccCCccCCEEEE
Q 000160 1069 LSTRSGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1069 LSTrAGG~GLNLT~AdtVIf 1088 (1992)
.+.......+++...+.||+
T Consensus 712 ~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEE
T ss_pred ECHHHHhCCccccccceEEE
Confidence 66665555666666655554
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=31.89 E-value=2e+02 Score=31.14 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=28.1
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN 518 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~N 518 (1992)
+...+|.-..|.|||..+..++..+... .++++++.......+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~ 65 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDS 65 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHH
Confidence 4345677889999998887777665543 246777764443333
No 251
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=31.82 E-value=1.5e+02 Score=34.55 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.3
Q ss_pred ccEEEEcCCCChHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAML 494 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALL 494 (1992)
.+.+|.-+.|.|||..+-++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 467899999999998776663
No 252
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=30.54 E-value=1.4e+02 Score=38.02 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecC-CCCHHHHHHHHHHHhcCCCceEEEEec--cc
Q 000160 998 LQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDG-STQPEERQTLMQRFNTNPKIFLFILST--RS 1073 (1992)
Q Consensus 998 Lq~L~~LL~kLk-s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDG-sts~eqRq~lIerFN~D~~ifVfLLST--rA 1073 (1992)
...|...|.++. ..+.++|||...-.+++.+.. ..++.. .+.| +++ +..+++.|..+++ -| |+++ .+
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v-~~q~~~~~---~~~~~~~~~~~~~-~v-l~~v~gg~ 448 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPK-YVESEDSS---VEDLYSAISANNK-VL-IGSVGKGK 448 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSE-EECCSSCC---HHHHHHHTTSSSS-CE-EEEESSCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcE-EEcCCCCC---HHHHHHHHHhcCC-eE-EEEEecce
Confidence 455566665543 345578877777777766665 234433 3333 234 5678889964443 34 5555 68
Q ss_pred cccccCCc---c--CCEEEEecCCCC
Q 000160 1074 GGVGINLV---G--ADTVIFYDSDWN 1094 (1992)
Q Consensus 1074 GG~GLNLT---~--AdtVIfyD~dWN 1094 (1992)
..+|||+. + +..||+.-.|+-
T Consensus 449 ~~EGiD~~d~~g~~l~~viI~~lPfp 474 (551)
T 3crv_A 449 LAEGIELRNNDRSLISDVVIVGIPYP 474 (551)
T ss_dssp SCCSSCCEETTEESEEEEEEESCCCC
T ss_pred ecccccccccCCcceeEEEEEcCCCC
Confidence 89999999 4 677888776653
No 253
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=30.08 E-value=2.1e+02 Score=27.86 Aligned_cols=93 Identities=9% Similarity=-0.071 Sum_probs=57.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc---CCCceEEEEeccccccccCC--ccCCE
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT---NPKIFLFILSTRSGGVGINL--VGADT 1085 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~---D~~ifVfLLSTrAGG~GLNL--T~Adt 1085 (1992)
.|..|..++.....+..+ ....+..+.+|-.++...--.++..... .+.+.|+++|......-... .+|+.
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 678888887766666554 4467888888876654444556666554 34677777776532221222 23444
Q ss_pred EEEecCCCChhhHHHHHHhhcccC
Q 000160 1086 VIFYDSDWNPAMDQQAQDRCHRIG 1109 (1992)
Q Consensus 1086 VIfyD~dWNPa~d~QA~gRahRIG 1109 (1992)
++--++++....+++.++-+-+
T Consensus 102 --~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 102 --YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp --EEESSCCHHHHHHHHHHHHHHH
T ss_pred --EEeccCCHHHHHHHHHHHHhhh
Confidence 3445789998888888876543
No 254
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=29.76 E-value=1.2e+02 Score=32.71 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=32.2
Q ss_pred HHHHHHH-HHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC--cHHHHHH
Q 000160 462 GLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS--VMLNWET 521 (1992)
Q Consensus 462 GL~WLvs-lye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtS--LL~NWe~ 521 (1992)
+|+.++. -...+.-.+|+-..|.|||..+..++. . . .+++++|.-.. -...|..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~--~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--S--GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--H--CSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--c--CCcEEEEECCCCCCHHHHHH
Confidence 5566553 233344457788899999988777665 1 2 24667765433 3444544
No 255
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=28.57 E-value=1.1e+02 Score=42.57 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=69.0
Q ss_pred ccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000160 992 QFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1068 (1992)
Q Consensus 992 q~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsts~eqRq~lIerFN~D~~ifVfL 1068 (1992)
...+||-.+..-.+..+...|.++||.+.......-+...|.. .|+++..+.|+++..+|...+.++.. +.+.|+|
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~-g~~~IlV 179 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE-DDYHILV 179 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT-SCCSEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC-CCCCEEE
Confidence 3568998866666555557788999999998888777777766 67899999999998888888888875 3455666
Q ss_pred Eecccccc---ccCCccCCEEEE
Q 000160 1069 LSTRSGGV---GINLVGADTVIF 1088 (1992)
Q Consensus 1069 LSTrAGG~---GLNLT~AdtVIf 1088 (1992)
.+....-. -+++...+.||+
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEE
T ss_pred ECHHHHHHHHHhhcccCcCEEEE
Confidence 66543311 134555666655
No 256
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=28.34 E-value=1.8e+02 Score=34.91 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=58.8
Q ss_pred cccchHHHHHHHHHHH-hhCCCeEEEEeCchHHHHHHHHHH-HHcCC---cEEEecCCCCHHHHHHHHHHHhcCCCceEE
Q 000160 993 FDCGKLQELAILLRKL-KSDGHRALIFTQMTKMLDILEEFI-SLYGY---TYMRLDGSTQPEERQTLMQRFNTNPKIFLF 1067 (1992)
Q Consensus 993 ~dSgKLq~L~~LL~kL-ks~G~KVLIFSQ~t~mLDILe~~L-~~~Gi---~y~RLDGsts~eqRq~lIerFN~D~~ifVf 1067 (1992)
..+||--....++..+ ...+.++||.+.....+.-....+ ...|+ .+..++|......+...... ..|+
T Consensus 32 tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~------~~iv 105 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR------AKVI 105 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH------CSEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC------CCEE
Confidence 4689977666665444 346789999999877666555544 44466 89999999998776554432 3455
Q ss_pred EEecccccc-----ccCCccCCEEEE
Q 000160 1068 ILSTRSGGV-----GINLVGADTVIF 1088 (1992)
Q Consensus 1068 LLSTrAGG~-----GLNLT~AdtVIf 1088 (1992)
|.+...... .+++...+.||+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EecHHHHHHHHhcCCcchhhceEEEE
Confidence 666543321 345666676666
No 257
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=27.57 E-value=94 Score=33.47 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=20.5
Q ss_pred ccEEEEcCCCChHHHHHHHHHHHHH
Q 000160 474 LNGILADEMGLGKTIMTIAMLAHLA 498 (1992)
Q Consensus 474 lgGILADEMGLGKTIQtIALLa~La 498 (1992)
.+-+|.-+.|.|||..+-++...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678899999999998887776654
No 258
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=26.99 E-value=97 Score=30.48 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc
Q 000160 1012 GHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT 1060 (1992)
Q Consensus 1012 G~KVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~ 1060 (1992)
.++|+||+. +-.....+..+|..+|+.|..++=.....-|+.+...+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 68 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW 68 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCC
Confidence 468999987 3346777888899999999999888777777777766643
No 259
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=26.48 E-value=1e+02 Score=40.46 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=35.6
Q ss_pred CCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 000160 453 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV 515 (1992)
Q Consensus 453 ~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSL 515 (1992)
+.+-.-|..+|..+..... +.- +|--.-|-|||..+..+++.+. +..+|++|+.-
T Consensus 174 ~~~T~dQ~~al~~~~~~~~-~~~-vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~~ 228 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP-GVA-AVTAARGRGKSALAGQLISRIA------GRAIVTAPAKA 228 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS-EEE-EEEECTTSSHHHHHHHHHHHSS------SCEEEECSSCC
T ss_pred CCCCHHHHHHHHHHHHhhh-CeE-EEecCCCCCHHHHHHHHHHHHH------hCcEEECCCHH
Confidence 4567789999988776433 222 4444499999955544444432 34688889843
No 260
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=26.45 E-value=1.1e+02 Score=31.81 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=40.9
Q ss_pred CeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCc-eEEE
Q 000160 1013 HRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKI-FLFI 1068 (1992)
Q Consensus 1013 ~KVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~i-fVfL 1068 (1992)
.+|+||+. +-.....+..+|..+|+.|..++=....+.|+.+...... +.+ .|||
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~-~tvP~VfI 96 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWV 96 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCC-CCcCEEEE
Confidence 48999987 6677888999999999999888877777777777665543 344 3443
No 261
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.22 E-value=1.1e+02 Score=29.84 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc---CCCceEEEEeccccc
Q 000160 999 QELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT---NPKIFLFILSTRSGG 1075 (1992)
Q Consensus 999 q~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~---D~~ifVfLLSTrAGG 1075 (1992)
..|..+|.. .|..|..++.....+..+ ....+..+.+|-.++...--.++..... .+.+.|+++|.....
T Consensus 17 ~~l~~~L~~---~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 17 ETFKELLEM---LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp HHHHHHHHH---TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred HHHHHHHHH---cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcch
Confidence 344445543 477888887766666554 4466788888866554444455665554 466777777755433
Q ss_pred cccCC--ccCCEEEEecCCCChhhHHHHHHhhcccCCc
Q 000160 1076 VGINL--VGADTVIFYDSDWNPAMDQQAQDRCHRIGQT 1111 (1992)
Q Consensus 1076 ~GLNL--T~AdtVIfyD~dWNPa~d~QA~gRahRIGQT 1111 (1992)
.-... .+|+. ++--++++....+++.++++-++.
T Consensus 90 ~~~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 90 DLGKEACELFDF--YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp TCCHHHHHHCSE--EEESSCCHHHHHHHHHHHC-----
T ss_pred hHHHHHHHhhHH--heeCCCCHHHHHHHHHHhhccCCC
Confidence 22211 23554 455678999999999988876543
No 262
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=26.13 E-value=1.6e+02 Score=33.97 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=19.3
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~L 497 (1992)
..+.+|.-+.|.|||..+-++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999998776665443
No 263
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=25.83 E-value=1.3e+02 Score=37.41 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCce
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 556 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fd 556 (1992)
+++--.|.|||-.+..|..++.... +.+++|.-..--..-...+..|.....+-.|.........
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~------------ 165 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPI------------ 165 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHH------------
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHH------------
Q ss_pred EEEEeehhhhhchhhhhccCccEEEEcCccccC-----ChhhHHHHHHHhcccceEEEE
Q 000160 557 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK-----NWKSQRWQTLLNFNSKRRILL 610 (1992)
Q Consensus 557 VVITSYe~l~qD~~~f~r~~W~~LILDEAH~IK-----N~~Sq~~qaLl~L~a~rRLLL 610 (1992)
..+......+....+++||||++-+.. +.-......+..++....+++
T Consensus 166 ------~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLV 218 (433)
T 3kl4_A 166 ------EIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILV 218 (433)
T ss_dssp ------HHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEE
T ss_pred ------HHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEE
No 264
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=24.94 E-value=1e+02 Score=37.47 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=47.2
Q ss_pred CCCChhhhHHHHHHHHhcCC----ChhHHHHHhhccccCcccc----ccccCchhhHHHHHHHHHHHhhhCC
Q 000160 1591 DVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYR----GRYRHPVHCCERFRELIQRYILSVP 1654 (1992)
Q Consensus 1591 ~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~----~~~r~~~~c~~r~~~~~~~~~~~~~ 1654 (1992)
-.|+..||..|...+|.||= ||+.|-+-| +.+-.++ =.-|+|..+..|-..||.-..-+..
T Consensus 229 k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I---r~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 229 RTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI---RDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEFN 297 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH---HHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CccCHHHHHHHHHHHHHhccCCCChHHHHHHHH---HhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999999999994 699997766 3332222 1239999999999999977666654
No 265
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=24.21 E-value=4.1e+02 Score=28.67 Aligned_cols=92 Identities=10% Similarity=0.121 Sum_probs=55.0
Q ss_pred cccchHHHHHH-HHHHHhhC--CCeEEEEeCchHHHHHHHHHHHHc-----CCcEEEecCCCCHHHHHHHHHHHhcCCCc
Q 000160 993 FDCGKLQELAI-LLRKLKSD--GHRALIFTQMTKMLDILEEFISLY-----GYTYMRLDGSTQPEERQTLMQRFNTNPKI 1064 (1992)
Q Consensus 993 ~dSgKLq~L~~-LL~kLks~--G~KVLIFSQ~t~mLDILe~~L~~~-----Gi~y~RLDGsts~eqRq~lIerFN~D~~i 1064 (1992)
..+||--.... ++..+... +.++||.+.......-+...+... ++++..+.|+.+...+...+.. ...
T Consensus 60 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~ 135 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----NCP 135 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH----SCC
T ss_pred CCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc----CCC
Confidence 46899754433 33443332 348999999877776666555443 7899999999986665544432 233
Q ss_pred eEEEEecccc-----ccccCCccCCEEEE
Q 000160 1065 FLFILSTRSG-----GVGINLVGADTVIF 1088 (1992)
Q Consensus 1065 fVfLLSTrAG-----G~GLNLT~AdtVIf 1088 (1992)
.|++.+.... ...+++...+.||+
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 4555554322 12355666666664
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=24.10 E-value=1.9e+02 Score=36.06 Aligned_cols=134 Identities=14% Similarity=0.046 Sum_probs=0.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCchhHHHHhhhccCCCCCce
Q 000160 477 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 556 (1992)
Q Consensus 477 ILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P~lKVL~Y~Gs~keRk~kr~gw~k~~~fd 556 (1992)
+++--.|.|||-++..|..++.... ..+++|.-..--..-...++.|.....+-+|.........
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~G---~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~------------ 168 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAI------------ 168 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHH------------
T ss_pred EEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHH------------
Q ss_pred EEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccc----eEEEEeccCCCCChHHHHHHHHHhCC
Q 000160 557 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK----RRILLTGTPLQNDLMELWSLMHFLMP 631 (1992)
Q Consensus 557 VVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~----rRLLLTGTPLQNsL~ELwSLL~FL~P 631 (1992)
..+..-...+....+++||+|.|=+..+..........-.... -.+.+.+|--|+.+.-...+-..+.+
T Consensus 169 ------~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i 241 (443)
T 3dm5_A 169 ------KLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPI 241 (443)
T ss_dssp ------HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTT
T ss_pred ------HHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCC
No 267
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=23.94 E-value=2e+02 Score=33.86 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHHH-HHccCccEEEEcCCCChHHHHHHHHHHHHHHh---cCCCCcEEEEecCC
Q 000160 461 IGLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACE---KGIWGPHLIVVPTS 514 (1992)
Q Consensus 461 ~GL~WLvs-lye~~lgGILADEMGLGKTIQtIALLa~La~e---kg~~GP~LIVVPtS 514 (1992)
.+|++++. -+..+.-.+|+-+.|.|||..++.++...+.. .|..++++.|.-..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35666652 23344456888999999999888887764322 11235777776554
No 268
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.25 E-value=1.2e+02 Score=40.09 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=18.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 000160 475 NGILADEMGLGKTIMTIAMLAHL 497 (1992)
Q Consensus 475 gGILADEMGLGKTIQtIALLa~L 497 (1992)
+-+|.-+.|.|||..+-++...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36889999999999887766655
No 269
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.64 E-value=3.5e+02 Score=25.39 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=51.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccccccCC--ccCCEEE
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGVGINL--VGADTVI 1087 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAGG~GLNL--T~AdtVI 1087 (1992)
.|..|..++.....+..+ ....+..+.+|-.++...--.+++.+.. .+.+.|+++|...... ... .+|+..
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~- 97 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEY- 97 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEE-
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccce-
Confidence 477777766655555444 3456777888765543222344444433 3566677776543222 222 245543
Q ss_pred EecCCCChhhHHHHHHhhcc
Q 000160 1088 FYDSDWNPAMDQQAQDRCHR 1107 (1992)
Q Consensus 1088 fyD~dWNPa~d~QA~gRahR 1107 (1992)
+--++++....+++.++.|
T Consensus 98 -l~Kp~~~~~l~~~i~~~~~ 116 (116)
T 3a10_A 98 -VVKSFNFDELKEKVKKLLS 116 (116)
T ss_dssp -EECCSSTHHHHHHHHHHTC
T ss_pred -EECCCCHHHHHHHHHHHhC
Confidence 3457788888888877653
No 270
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=21.79 E-value=85 Score=37.29 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=45.5
Q ss_pred CCCCChhhhHHHHHHHHhcCC----ChhHHHHHhhccccCcccc----ccccCchhhHHHHHHHHHHHhhhC
Q 000160 1590 PDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYR----GRYRHPVHCCERFRELIQRYILSV 1653 (1992)
Q Consensus 1590 ~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~----~~~r~~~~c~~r~~~~~~~~~~~~ 1653 (1992)
+-.|+..||..|.-.+|.||= ||+.|.+-+ +.+-.++ =+-|+|.....|-..|+.-..-+.
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I---r~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE~ 280 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI---RASPQFRFDWFIKSRTALELQRRCNTLITLIEREN 280 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH---HHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHH---HhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 348999999999999999995 699998766 3321111 134999999999999887554443
No 271
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=21.66 E-value=1.7e+02 Score=40.42 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=64.0
Q ss_pred ccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHH----HHHHcCC----cEEEecCCCCHHHHHHHHHHHhcCCC
Q 000160 992 QFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEE----FISLYGY----TYMRLDGSTQPEERQTLMQRFNTNPK 1063 (1992)
Q Consensus 992 q~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~----~L~~~Gi----~y~RLDGsts~eqRq~lIerFN~D~~ 1063 (1992)
...|||--.+.-++..+...|.++||.+.......-+.. ++...|+ .+..+.|+++...+....+.+..
T Consensus 79 pTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--- 155 (1054)
T 1gku_B 79 PTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--- 155 (1054)
T ss_dssp CBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG---
T ss_pred CCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC---
Confidence 357999877777777777778899999998776554444 4445577 88999999998888777777765
Q ss_pred ceEEEEeccccccccC-CccCCEEEE
Q 000160 1064 IFLFILSTRSGGVGIN-LVGADTVIF 1088 (1992)
Q Consensus 1064 ifVfLLSTrAGG~GLN-LT~AdtVIf 1088 (1992)
+.|++.+....-.-+. |...+.||+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 5566666533322222 444555544
No 272
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.44 E-value=22 Score=44.24 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=29.0
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 519 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NW 519 (1992)
..|.+|.-..|.|||..+=|+..++. -|++.|..+.++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEecchhhccc
Confidence 45678899999999998877765542 256666666665544
No 273
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=21.28 E-value=3.3e+02 Score=29.87 Aligned_cols=90 Identities=18% Similarity=0.091 Sum_probs=55.7
Q ss_pred cccchHHH-HHHHHHHHhh--CCCeEEEEeCchHHHHHHHHHHHHc-----CCcEEEecCCCCHHHHHHHHHHHhcCCCc
Q 000160 993 FDCGKLQE-LAILLRKLKS--DGHRALIFTQMTKMLDILEEFISLY-----GYTYMRLDGSTQPEERQTLMQRFNTNPKI 1064 (1992)
Q Consensus 993 ~dSgKLq~-L~~LL~kLks--~G~KVLIFSQ~t~mLDILe~~L~~~-----Gi~y~RLDGsts~eqRq~lIerFN~D~~i 1064 (1992)
..+||--. +.-++..+.. .+.++||.+.......-+...+... ++++..+.|+.+..++...+ + +.
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~ 143 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K---KC 143 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---SC
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---CC
Confidence 46899765 5556666533 3579999999887776666655443 78889999998866554432 2 34
Q ss_pred eEEEEecccc-----ccccCCccCCEEEE
Q 000160 1065 FLFILSTRSG-----GVGINLVGADTVIF 1088 (1992)
Q Consensus 1065 fVfLLSTrAG-----G~GLNLT~AdtVIf 1088 (1992)
.|++.+.... ...+++...+.||+
T Consensus 144 ~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 144 HIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp SEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 5655554322 12345555555544
No 274
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=21.14 E-value=4.8e+02 Score=29.16 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=54.0
Q ss_pred cccchHHH-HHHHHHHHhhC--CCeEEEEeCchHHHHHHHHHH----HHcCCcEEEecCCCCHHHHHHHHHHHhcCCCce
Q 000160 993 FDCGKLQE-LAILLRKLKSD--GHRALIFTQMTKMLDILEEFI----SLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIF 1065 (1992)
Q Consensus 993 ~dSgKLq~-L~~LL~kLks~--G~KVLIFSQ~t~mLDILe~~L----~~~Gi~y~RLDGsts~eqRq~lIerFN~D~~if 1065 (1992)
..+||--. +.-++..+... +.++||.+.......-+...+ ...|+.+..+.|+.....+...+ .. ...
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~--~~~ 163 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK--KPH 163 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT--CCS
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC--CCC
Confidence 46899754 44455555443 457999998877655444444 44589999999998854433322 22 344
Q ss_pred EEEEecccc------ccccCCccCCEEEE
Q 000160 1066 LFILSTRSG------GVGINLVGADTVIF 1088 (1992)
Q Consensus 1066 VfLLSTrAG------G~GLNLT~AdtVIf 1088 (1992)
|++.+.... ..++++...+.||+
T Consensus 164 I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 164 IIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp EEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 555553321 23456666666655
No 275
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=21.09 E-value=2.8e+02 Score=26.83 Aligned_cols=96 Identities=9% Similarity=-0.002 Sum_probs=54.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccc-----c-ccCCccCC
Q 000160 1012 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGG-----V-GINLVGAD 1084 (1992)
Q Consensus 1012 G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAGG-----~-GLNLT~Ad 1084 (1992)
+..|..++.....+..+ ... +..+.+|-.++...--.++..+.. .+.+.|+++|..... . -.....+.
T Consensus 27 ~~~v~~~~~~~~~~~~~----~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFLTLS----LNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHTTSC----CCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHHHhh----ccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 55666666554433332 223 677777776665455556666654 356677777754431 1 11122333
Q ss_pred EEEEecCCCChhhHHHHHHhhcccCCcC
Q 000160 1085 TVIFYDSDWNPAMDQQAQDRCHRIGQTR 1112 (1992)
Q Consensus 1085 tVIfyD~dWNPa~d~QA~gRahRIGQTR 1112 (1992)
..-++--++++....+++.++..-++..
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~~~~~ 129 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNRQAEG 129 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCCC---
T ss_pred cceeeCCCCCHHHHHHHHHHHHhhcccc
Confidence 3445566788888888888888766543
No 276
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.87 E-value=3.7e+02 Score=26.51 Aligned_cols=94 Identities=5% Similarity=-0.067 Sum_probs=41.7
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCH-HHHHHHHHHHhcCCCceEEEEeccccccc-cCCccCCEEEE
Q 000160 1011 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQP-EERQTLMQRFNTNPKIFLFILSTRSGGVG-INLVGADTVIF 1088 (1992)
Q Consensus 1011 ~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~-eqRq~lIerFN~D~~ifVfLLSTrAGG~G-LNLT~AdtVIf 1088 (1992)
.|..|..++.....+..+.. ...+..+.+|-.++. ..--.++......+.+.|+++|......- .....+...-|
T Consensus 28 ~g~~v~~~~~~~~a~~~l~~---~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~ 104 (140)
T 3h5i_A 28 YGYTVEIALTGEAAVEKVSG---GWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGY 104 (140)
T ss_dssp TTCEEEEESSHHHHHHHHHT---TCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEE
T ss_pred cCCEEEEecChHHHHHHHhc---CCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEE
Confidence 36666666655555444321 134555666543321 11122222222224555655654432211 11222223334
Q ss_pred ecCCCChhhHHHHHHhhcc
Q 000160 1089 YDSDWNPAMDQQAQDRCHR 1107 (1992)
Q Consensus 1089 yD~dWNPa~d~QA~gRahR 1107 (1992)
+--++++....+++.++.|
T Consensus 105 l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 105 VMKSATEQVLITIVEMALR 123 (140)
T ss_dssp EETTCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 4455666666666665544
No 277
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=20.51 E-value=4.9e+02 Score=28.73 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=55.9
Q ss_pred cccchHHH-HHHHHHHHh-------hCCCeEEEEeCchHHHH----HHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc
Q 000160 993 FDCGKLQE-LAILLRKLK-------SDGHRALIFTQMTKMLD----ILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT 1060 (1992)
Q Consensus 993 ~dSgKLq~-L~~LL~kLk-------s~G~KVLIFSQ~t~mLD----ILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~ 1060 (1992)
..+||--. +.-++..+. ..+.++||.+....... .+..++...|+.+..+.|+.+...+...+. .
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~ 151 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R 151 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C
Confidence 46899654 555555554 24678999998876544 455566677999999999998665544443 2
Q ss_pred CCCceEEEEecccc-----ccccCCccCCEEEE
Q 000160 1061 NPKIFLFILSTRSG-----GVGINLVGADTVIF 1088 (1992)
Q Consensus 1061 D~~ifVfLLSTrAG-----G~GLNLT~AdtVIf 1088 (1992)
. +.|++.+.... ...+++...+.||+
T Consensus 152 ~--~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 G--VEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp C--CSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred C--CCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 2 44555543221 11345666666554
No 278
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.45 E-value=24 Score=43.99 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=31.3
Q ss_pred CccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000160 473 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 521 (1992)
Q Consensus 473 ~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~ 521 (1992)
..|.+|.-..|.|||+.+=|+..++. -|++.|....++..|.-
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSS
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCc
Confidence 56778899999999998877765542 26777777777665543
No 279
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=20.45 E-value=5.2e+02 Score=28.12 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=29.7
Q ss_pred HHHHHHH-HHccCccEEEEcCCCChHHHHHHHHHHHHHHhc---CCCCcEEEEecC
Q 000160 462 GLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEK---GIWGPHLIVVPT 513 (1992)
Q Consensus 462 GL~WLvs-lye~~lgGILADEMGLGKTIQtIALLa~La~ek---g~~GP~LIVVPt 513 (1992)
+|++++. -...+.-.+|+-..|.|||..+..++....... +..++++.|.-.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 4666652 223333456777899999988877766422211 123466666543
No 280
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.40 E-value=1.7e+02 Score=27.35 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC---CCceEEEEeccccc
Q 000160 999 QELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN---PKIFLFILSTRSGG 1075 (1992)
Q Consensus 999 q~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D---~~ifVfLLSTrAGG 1075 (1992)
..|..+|. ..|.+|..++.....+..+. ...+..+.+|-.++...-..++...... +.+.|++++.....
T Consensus 15 ~~l~~~l~---~~g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~ 87 (119)
T 2j48_A 15 TVVCEMLT---AAGFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPV 87 (119)
T ss_dssp HHHHHHHH---HTTCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCS
T ss_pred HHHHHHHH---hCCcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCc
Confidence 33444444 35778887776655555543 3467777777655432333455555442 56666677654333
Q ss_pred cccCC--ccCCEEEEecCCCChhhHHHHHHhhcc
Q 000160 1076 VGINL--VGADTVIFYDSDWNPAMDQQAQDRCHR 1107 (1992)
Q Consensus 1076 ~GLNL--T~AdtVIfyD~dWNPa~d~QA~gRahR 1107 (1992)
. .. .+|+.+ +--+.++....+++.++.+
T Consensus 88 ~--~~~~~g~~~~--l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 88 D--PLLTAQASAI--LSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp S--HHHHHHCSEE--CSSCSTTHHHHHHHHTTCC
T ss_pred h--hhhhcCHHHh--ccCCCCHHHHHHHHHHHhc
Confidence 2 22 234443 4457788888888777654
No 281
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=20.15 E-value=5.1e+02 Score=29.16 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=54.5
Q ss_pred cccchHHH-HHHHHHHHhh------CCCeEEEEeCchHHHHHHHHHH----HHcCCcEEEecCCCCHHHHHHHHHHHhcC
Q 000160 993 FDCGKLQE-LAILLRKLKS------DGHRALIFTQMTKMLDILEEFI----SLYGYTYMRLDGSTQPEERQTLMQRFNTN 1061 (1992)
Q Consensus 993 ~dSgKLq~-L~~LL~kLks------~G~KVLIFSQ~t~mLDILe~~L----~~~Gi~y~RLDGsts~eqRq~lIerFN~D 1061 (1992)
..|||--. +.-++..+.. .+.++||.+.......-+...| ...++.+..+.|+......... +...
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~ 176 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG 176 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC
Confidence 46899754 4555555433 5778999999876655444444 4567888899998875544333 3332
Q ss_pred CCceEEEEecc------ccccccCCccCCEEEE
Q 000160 1062 PKIFLFILSTR------SGGVGINLVGADTVIF 1088 (1992)
Q Consensus 1062 ~~ifVfLLSTr------AGG~GLNLT~AdtVIf 1088 (1992)
+.|++.+.. ..+.++++...+.||+
T Consensus 177 --~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 177 --INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp --CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred --CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 445444421 1223466666666655
Done!