BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000161
(1988 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4HW04|DPOE1_ARATH DNA polymerase epsilon catalytic subunit A OS=Arabidopsis thaliana
GN=POL2A PE=1 SV=1
Length = 2161
Score = 2367 bits (6134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1139/1413 (80%), Positives = 1266/1413 (89%), Gaps = 28/1413 (1%)
Query: 2 DRRRWDRQDGRRTKKQKLIRSAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRK 61
D RR DR+D R +KK K++ +AE+ELE+KLG+ LFSEG+ RLGWLLTF+SSS ED DT K
Sbjct: 4 DNRRRDRKDTRWSKKPKVVNTAEDELESKLGFGLFSEGETRLGWLLTFSSSSWEDRDTGK 63
Query: 62 VYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKE 121
VYSC+DLYFV+QDG +FK+KYKFRPYFYAATK+KME+++EAYLRRRYE Q+ADIEI+EKE
Sbjct: 64 VYSCVDLYFVTQDGFSFKTKYKFRPYFYAATKDKMELELEAYLRRRYERQVADIEIVEKE 123
Query: 122 DLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQ 181
DLDLKNHLSGL K YLKISFDTVQQLM+VK+DLLH+VERNQAKFDA EAYESIL GKREQ
Sbjct: 124 DLDLKNHLSGLQKKYLKISFDTVQQLMEVKRDLLHIVERNQAKFDALEAYESILAGKREQ 183
Query: 182 RPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHV 241
RPQD LD IVDLREYDVPYH+RFAIDNDVR GQWY+VSISST +LEKR DLLQRAEV V
Sbjct: 184 RPQDCLDSIVDLREYDVPYHVRFAIDNDVRSGQWYNVSISSTDVILEKRTDLLQRAEVRV 243
Query: 242 CAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGY 301
CAFDIETTKLPLKFPDA+YD IMMISYM+DGQG+LIINRECVGED+EDLEYTPKPEFEGY
Sbjct: 244 CAFDIETTKLPLKFPDAEYDQIMMISYMVDGQGFLIINRECVGEDVEDLEYTPKPEFEGY 303
Query: 302 FKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQC 361
FKVTNV NE+ELL+ WF HMQE+KPGIYVTYNGD+FDWPF+E RA+HHG KM+EELGF+C
Sbjct: 304 FKVTNVKNEVELLQRWFYHMQELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELGFRC 363
Query: 362 DKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKE 421
D+NQGECRAKFACHLDCFAWVKRDSYLPQGS GLKAVTKAKLGYDPLEVNPEDMVRFA E
Sbjct: 364 DQNQGECRAKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAME 423
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
KPQ MASYSVSDAVATYYLYMTYV+PFIFSLATIIPM PDEVLRKGSGTLCEMLLMV+AY
Sbjct: 424 KPQTMASYSVSDAVATYYLYMTYVNPFIFSLATIIPMVPDEVLRKGSGTLCEMLLMVEAY 483
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLL 541
KANV+CPNK+Q+DPEKFY+N LLESETYIGGHVECLESGVFRSD+PTSFKLD SAY+QL+
Sbjct: 484 KANVVCPNKNQADPEKFYQNQLLESETYIGGHVECLESGVFRSDIPTSFKLDSSAYQQLI 543
Query: 542 NNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMY 601
+NL RDL+YAI VEGKM ++S+SNYDEVK+ I EKL +L+++PIREE PLIYHLDVAAMY
Sbjct: 544 DNLGRDLEYAITVEGKMRMDSISNYDEVKDEIKEKLEKLRDDPIREEGPLIYHLDVAAMY 603
Query: 602 PNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIE 661
PNIILTNRLQPPSIVTDE+CTACDFNRPGKTCLRKLEWVWRG FMGK+SDYYHLKKQIE
Sbjct: 604 PNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGVTFMGKKSDYYHLKKQIE 663
Query: 662 SEFVD-GTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRE 720
SEFVD G N SKSFLDLPK++QQS+LK+RLKKYCQKAYKRVLDKP+TE+REAGICMRE
Sbjct: 664 SEFVDAGANIMSSKSFLDLPKVDQQSKLKERLKKYCQKAYKRVLDKPITEVREAGICMRE 723
Query: 721 NSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKC 780
N FYVDTVRSFRDRRYEYK LNKVWKGKLSEAKASGNSIKIQEAQDMVV+YDSLQLAHKC
Sbjct: 724 NPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQLAHKC 783
Query: 781 ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPG 840
ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIE+IGKPLELDTDGIWC LPG
Sbjct: 784 ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCCLPG 843
Query: 841 SFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEF 900
SFPENFTFKT D+ KKLTISYPCVMLNVDVA+NNTNDQYQTLVDPV KTY++HSECSIEF
Sbjct: 844 SFPENFTFKTIDM-KKLTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKTYKSHSECSIEF 902
Query: 901 EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFD 960
EVDGPYKAMI+PASKEEGILIKKRYAVFN DGTLAELKGFEIKRRGELKLIKVFQAELFD
Sbjct: 903 EVDGPYKAMIIPASKEEGILIKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAELFD 962
Query: 961 KFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKS 1020
KFLHGST+EECYSAVAAVA+RWLDLLDNQGKDIADSEL+DYISESSTMSKSLADYGEQKS
Sbjct: 963 KFLHGSTLEECYSAVAAVADRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKS 1022
Query: 1021 CAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLR 1080
CAVTTA+RL++FLG TMVKDKGLRCQYIVACEP+GTPVSERAVPVAIF T+ E+MKF+LR
Sbjct: 1023 CAVTTAKRLAEFLGVTMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFTTNPEVMKFHLR 1082
Query: 1081 KWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVRE 1140
KWCKTSSDVGIR I+DWSYYKQRLSSAIQK+ITIPAAMQKV+NPVPRV+HPDWL+KKVRE
Sbjct: 1083 KWCKTSSDVGIRLIIDWSYYKQRLSSAIQKVITIPAAMQKVANPVPRVLHPDWLHKKVRE 1142
Query: 1141 KEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVR 1200
K+DKFRQRKLVD+FSS KD L + + + +NVED+EDF K+ R SV GP+PI R
Sbjct: 1143 KDDKFRQRKLVDMFSSANKDVVL----DTDLPVTKDNVEDIEDFCKENRPSVKGPKPIAR 1198
Query: 1201 CFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKR 1260
+EVN +Q + + D +E D I +NID+ V+Y+GWLELKKR
Sbjct: 1199 SYEVNKKQSECEQQESWD--------TEFHD--------ISFQNIDKSVNYQGWLELKKR 1242
Query: 1261 KWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCH 1320
KWK L+++KK++LG LR+S+Q + IN K Q R GVGSYFRR E A+T H
Sbjct: 1243 KWKVTLEKKKKRRLGDLRSSNQVD------THEINQKVGQGRGGVGSYFRRPEEALTSSH 1296
Query: 1321 WQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRVNKTLPHG 1380
WQIIQLVPS QSG F AWVVVEG+M++IP+++PR+FY+NSK PI E F G+ VNK LPHG
Sbjct: 1297 WQIIQLVPSPQSGQFFAWVVVEGLMLKIPLSIPRVFYINSKVPIDEYFQGKCVNKILPHG 1356
Query: 1381 RRSFNLIEVMIDEDQFRKESKKLAALLADPEVE 1413
R ++L EV I EDQF+KESKK AALLADP VE
Sbjct: 1357 RPCYSLTEVKIQEDQFKKESKKRAALLADPGVE 1389
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/607 (54%), Positives = 426/607 (70%), Gaps = 55/607 (9%)
Query: 1409 DPEVEVLGWQQNAAKIGMQRCAASSQWFNERISLARYAHI-------------------- 1448
D + + WQ+ AAKI M RCAA+ QW + RI+ +RYAH+
Sbjct: 1575 DNSYQPVSWQRPAAKIAMFRCAAAFQWLDRRITQSRYAHVPLGNFGLDWLTFTIDIFLSR 1634
Query: 1449 --------LWISDDGVPDLGGTSEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNA 1500
LW+SD+GVPDLGG + E+ FADEV Q L +PGAYRKVSVELKIH+L+VNA
Sbjct: 1635 ALRDQQQVLWVSDNGVPDLGGINNEEAFFADEVQQTSLVFPGAYRKVSVELKIHNLAVNA 1694
Query: 1501 LLKSNQVNEMEGGGLFGFDQDMNS-GPYNNELCGFDETTSSAPAFRVVKQLIQRCLTDAV 1559
LLKSN VNEMEGGG GF+QD+N G +N+ FDETT A AFRV+KQLI CLTD
Sbjct: 1695 LLKSNLVNEMEGGGFMGFEQDVNPRGINSNDNTSFDETTGCAQAFRVLKQLIHSCLTDVR 1754
Query: 1560 TSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFAN 1619
S N++AD+ILQ L WLCSP SKLHDP LH +LHKVMQKVFA+LL + R+LGA II+A+
Sbjct: 1755 KSKNIYADSILQRLSWWLCSPSSKLHDPALHLMLHKVMQKVFALLLTDLRRLGAIIIYAD 1814
Query: 1620 FSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPA 1679
FSKVIIDT KFDLSAAKAYC+SLL ++ ++FEWI LEPVH+WHSLLFMDQYNY GI A
Sbjct: 1815 FSKVIIDTVKFDLSAAKAYCESLLSTVRNSDIFEWILLEPVHYWHSLLFMDQYNYAGIRA 1874
Query: 1680 RADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQEG 1739
+ SLD +V I W++A +LP+ I+ F++++++F++ PWK A ++G
Sbjct: 1875 DDEISLD---EVTIEPKWSVARHLPEYIERDFIIIIAKFIFDPWKFA-------IENKKG 1924
Query: 1740 SSCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMKKMNNDQHNSPGVM 1799
SS E+ E+ +++Y++ +I S F L+ V D + HMK++N +
Sbjct: 1925 SS----------ESLEAQMIEYLREQIGSTFINMLVKKVDDIMSHMKEINVSDAS----- 1969
Query: 1800 QTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCP 1859
+ + K D LEFI+ + A ALDQNVQ DVLVMRK+LLKY++V+E A EAEF DP P
Sbjct: 1970 RVSGQAPKGDYSLEFIQVISAVLALDQNVQQDVLVMRKSLLKYIKVKECAAEAEFLDPGP 2029
Query: 1860 SFILPNVICSYCNDCRDLDLCRDMALLAQ-DWHCAMPQCGQPYDREVMENALLQIVRQRE 1918
SFILPNV CS C+ RDLD+CRD ALL + +W CA QCG+ YDRE ME++LL++VRQRE
Sbjct: 2030 SFILPNVACSNCDAYRDLDICRDPALLTEKEWSCADTQCGKIYDREQMESSLLEMVRQRE 2089
Query: 1919 RLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQ 1978
R+YH+QD+VCIRCNQVKAAHL EQC C+GSFRCKE S+F +M+IF++IA RQ F+LL+
Sbjct: 2090 RMYHMQDVVCIRCNQVKAAHLTEQCECSGSFRCKESGSEFSKRMEIFMDIAKRQKFRLLE 2149
Query: 1979 ECTSWIL 1985
E SWI+
Sbjct: 2150 EYISWII 2156
>sp|F4IFN6|DPOE2_ARATH DNA polymerase epsilon catalytic subunit B OS=Arabidopsis thaliana
GN=POL2B PE=2 SV=1
Length = 2138
Score = 2212 bits (5731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1079/1414 (76%), Positives = 1206/1414 (85%), Gaps = 43/1414 (3%)
Query: 1 MDRRRWDRQDGRRTKKQKLIRSAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTR 60
M RR DR R QK+ SA +ELE KLG+ LFS+G+ RLGWLLTFASSS ED DT
Sbjct: 1 MSGRRCDR----RLNVQKV--SAADELETKLGFGLFSQGETRLGWLLTFASSSWEDADTG 54
Query: 61 KVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEK 120
K +SC+DL+FV+QDGS+FK+KYKFRPY YAATK+ ME++VEAYLRRRYE Q+ADI+I+ K
Sbjct: 55 KTFSCVDLFFVTQDGSSFKTKYKFRPYLYAATKDNMELEVEAYLRRRYERQVADIQIVHK 114
Query: 121 EDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKRE 180
EDL LKNHLSGL K YLK+SFDTVQQL++VK+DLLH+VERN AKF+A EAYESIL+GKRE
Sbjct: 115 EDLYLKNHLSGLQKKYLKVSFDTVQQLVEVKRDLLHIVERNLAKFNALEAYESILSGKRE 174
Query: 181 QRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVH 240
QRPQD LD +VDLREYDVPYH+RFAIDNDVR GQWY+VSISST +LEKR DLLQRAEV
Sbjct: 175 QRPQDCLDSVVDLREYDVPYHVRFAIDNDVRSGQWYNVSISSTDVILEKRTDLLQRAEVR 234
Query: 241 VCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEG 300
VCAFDIET KLPLKFPDA+YD IMMISYM+DGQG+LI NRECVG+DIEDLEYTPKPEFEG
Sbjct: 235 VCAFDIETVKLPLKFPDAEYDQIMMISYMVDGQGFLITNRECVGKDIEDLEYTPKPEFEG 294
Query: 301 YFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQ 360
YFKVTNV NE+ELLR WF+HMQE+KPGIYVTYNGD+FDWPF+E RA+HHG KM+EELGF+
Sbjct: 295 YFKVTNVTNEVELLRKWFSHMQELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELGFR 354
Query: 361 CDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAK 420
CD+NQGECRAKF CHLDCF+WVKRDSYLPQGSQGLKAVTK KLGYDPLEVNPEDMVRFA
Sbjct: 355 CDQNQGECRAKFVCHLDCFSWVKRDSYLPQGSQGLKAVTKVKLGYDPLEVNPEDMVRFAM 414
Query: 421 EKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQA 480
EKPQ MASYSVSDAVATYYLYMTYVHPF+FSLATIIPM PDEVLRKGSGTLCEMLLMV+A
Sbjct: 415 EKPQTMASYSVSDAVATYYLYMTYVHPFVFSLATIIPMVPDEVLRKGSGTLCEMLLMVEA 474
Query: 481 YKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQL 540
YKANV+CPNK+Q+DPEKFY+ LLESETYIGGHVECL+SGVFRSD+PTSFKLD SAY+QL
Sbjct: 475 YKANVVCPNKNQADPEKFYQGKLLESETYIGGHVECLQSGVFRSDIPTSFKLDASAYQQL 534
Query: 541 LNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAM 600
++NL RDL+YAI VEGKM ++SVSN+DEVK I EKL +L+++PIREE PLIYHLDVAAM
Sbjct: 535 IDNLGRDLEYAITVEGKMRMDSVSNFDEVKEVIREKLEKLRDDPIREEGPLIYHLDVAAM 594
Query: 601 YPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQI 660
YPNIILTNRLQPPSIVTDEVCTACDFN P KTCLRKLEWVWRG F G +S+YYHLKKQI
Sbjct: 595 YPNIILTNRLQPPSIVTDEVCTACDFNGPEKTCLRKLEWVWRGVTFKGNKSEYYHLKKQI 654
Query: 661 ESEFVD-GTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMR 719
ESE VD G N SK FLDLPK+EQQS+LK+RLKKYCQKAY RVLDKP+TE+REAGICMR
Sbjct: 655 ESESVDAGANMQSSKPFLDLPKVEQQSKLKERLKKYCQKAYSRVLDKPITEVREAGICMR 714
Query: 720 ENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHK 779
EN FYVDTVRSFRDRRYEYK LNKVWKGKLSEAKASGN IKIQEA DMVV+YDSLQLAHK
Sbjct: 715 ENPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNLIKIQEAHDMVVVYDSLQLAHK 774
Query: 780 CILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLP 839
CILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIE+IGKPLELDTDGIWC LP
Sbjct: 775 CILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCALP 834
Query: 840 GSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIE 899
GSFPENFTFKT D+ KK TISYPCV+LNVDVA+NN+NDQYQTLVDPV KTY + SECSIE
Sbjct: 835 GSFPENFTFKTIDM-KKFTISYPCVILNVDVAKNNSNDQYQTLVDPVRKTYNSRSECSIE 893
Query: 900 FEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELF 959
FEVDGPYKAMI+PASKEEGILIKKRYAVFN DGT+AELKGFE+KRRGELKLIKVFQAELF
Sbjct: 894 FEVDGPYKAMIIPASKEEGILIKKRYAVFNHDGTIAELKGFEMKRRGELKLIKVFQAELF 953
Query: 960 DKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQK 1019
DKFLHGST+EECYSAVAAVANRWLDLL+ QGKDIADSEL+DYISESSTMSKSLADYG+QK
Sbjct: 954 DKFLHGSTLEECYSAVAAVANRWLDLLEGQGKDIADSELLDYISESSTMSKSLADYGQQK 1013
Query: 1020 SCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYL 1079
SCAVTTA+RL+DFLGDTMVKDKGLRCQYIVA EP+GTPVSERAVPVAIF+TD KFYL
Sbjct: 1014 SCAVTTAKRLADFLGDTMVKDKGLRCQYIVAREPEGTPVSERAVPVAIFQTDDPEKKFYL 1073
Query: 1080 RKWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVR 1139
+KWCK SS GIRSI+DW YYKQRL SAIQK+ITIPAAMQKV+NPV RV HP WL KKV
Sbjct: 1074 QKWCKISSYTGIRSIIDWMYYKQRLHSAIQKVITIPAAMQKVANPVLRVRHPYWLEKKVC 1133
Query: 1140 EKEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIV 1199
DKFRQ K+VD+FSS KD + D V D+E+F K+ R SV GP+P+
Sbjct: 1134 ---DKFRQGKIVDMFSSANKD---------HSTTQDNVVADIEEFCKENRPSVKGPKPVA 1181
Query: 1200 RCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKK 1259
R FEV+ K + D E D I +N+D+ VDY+GWLEL+K
Sbjct: 1182 RSFEVDRNHSEGKQQESWD--------PEFHD--------ISLQNVDKNVDYQGWLELEK 1225
Query: 1260 RKWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRC 1319
RKWK L +KK++ + ++ L IN K + R GVGSYFRR E A+T
Sbjct: 1226 RKWKMTLTNKKKRR-------YSSSLFGFDLEQNINKKVCKGRVGVGSYFRRPEEALTSS 1278
Query: 1320 HWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRVNKTLPH 1379
+ QIIQLV S QSG F AWVVVEG+M++IP+T+PR+FY+NSK I F G+ +NK LPH
Sbjct: 1279 YLQIIQLVQSPQSGQFFAWVVVEGLMLKIPLTIPRVFYINSKASIAGNFTGKCINKILPH 1338
Query: 1380 GRRSFNLIEVMIDEDQFRKESKKLAALLADPEVE 1413
G+ +NL+EV I EDQF KESKKLAALLADPE+E
Sbjct: 1339 GKPCYNLMEVNIQEDQFIKESKKLAALLADPEIE 1372
Score = 613 bits (1580), Expect = e-174, Method: Compositional matrix adjust.
Identities = 314/606 (51%), Positives = 405/606 (66%), Gaps = 59/606 (9%)
Query: 1409 DPEVEVLGWQQNAAKIGMQRCAASSQWFNERISLARYAHI-------------------- 1448
D + + WQ+ AAKI + RCA++ QW + RI+ +RYAH+
Sbjct: 1558 DNSYQPVSWQRPAAKIAVLRCASAIQWLDRRIAQSRYAHVPLGNFGRDWLTFTVDIFLSR 1617
Query: 1449 --------LWISDDGVPDLGGTSEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNA 1500
LW+SD+GVPDLG + E+ ADE L +PGAYRKVSVELK+H L+VNA
Sbjct: 1618 ALRDQQQVLWVSDNGVPDLGDINNEETFLADETS---LLFPGAYRKVSVELKVHRLAVNA 1674
Query: 1501 LLKSNQVNEMEGGGLFGFDQDMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTDAVT 1560
LLKS+ V+EMEGGG G + + G N+ FDE A AFRV+KQLI+R L DA
Sbjct: 1675 LLKSDLVSEMEGGGFLGVN---SRGSSLNDNGSFDENNGCAQAFRVLKQLIKRLLHDACN 1731
Query: 1561 SGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANF 1620
SGN++AD+ILQHL WL SP SKLHDP LH +LHKVMQKVFA+LL + R+LGA II+A+F
Sbjct: 1732 SGNIYADSILQHLSWWLRSPSSKLHDPALHLMLHKVMQKVFALLLTDLRRLGAIIIYADF 1791
Query: 1621 SKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPAR 1680
SKVIIDTGKFDLSAAK YC+SLL + +R++F+ I LEPVH+WHSLLFMDQ+NY GI A
Sbjct: 1792 SKVIIDTGKFDLSAAKTYCESLLTVMGSRDIFKLILLEPVHYWHSLLFMDQHNYAGIRAT 1851
Query: 1681 ADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQEGS 1740
DE ++V I W++A +LP+ IQ F+++V+ F++ PWK A L R S
Sbjct: 1852 GDEI--SGNEVTIEPKWSVARHLPEYIQKDFIIIVATFIFGPWKFA--LEKKRGS----- 1902
Query: 1741 SCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMKKMNNDQHNSPGVMQ 1800
AE+ E+ +V+Y+K +I + F ++ + + H+K +N +
Sbjct: 1903 ----------AESLEAEMVEYLKEQIGTRFISMIVEKIGNIRSHIKDINVSDAS-----W 1947
Query: 1801 TAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPS 1860
+ K D EFI+ + A ALDQNVQ DVLVMRK LLKY++V+E A EAEF DP PS
Sbjct: 1948 ASGQAPKGDYTFEFIQIITAVLALDQNVQQDVLVMRKILLKYIKVKECAAEAEFIDPGPS 2007
Query: 1861 FILPNVICSYCNDCRDLDLCRDMALLAQ-DWHCAMPQCGQPYDREVMENALLQIVRQRER 1919
FILPNV CS C RDLD CRD ALL + +W CA PQC + YD+E +E++++Q+VRQRER
Sbjct: 2008 FILPNVACSNCGAYRDLDFCRDSALLTEKEWSCADPQCVKIYDKEQIESSIIQMVRQRER 2067
Query: 1920 LYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQE 1979
+Y LQDLVC RCNQVKAAHL EQC C+GSFRCKE SDF +++IFL+IA RQ F+LL+E
Sbjct: 2068 MYQLQDLVCNRCNQVKAAHLTEQCECSGSFRCKESGSDFHKRIEIFLDIAKRQKFRLLEE 2127
Query: 1980 CTSWIL 1985
C SWIL
Sbjct: 2128 CISWIL 2133
>sp|Q07864|DPOE1_HUMAN DNA polymerase epsilon catalytic subunit A OS=Homo sapiens GN=POLE
PE=1 SV=5
Length = 2286
Score = 1443 bits (3736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1455 (50%), Positives = 994/1455 (68%), Gaps = 82/1455 (5%)
Query: 3 RRRWD--------RQDGRRTKKQKLIR----SAEEELEAKLGYDLFSEGDKRLGWLLTFA 50
RRR D R DG + L R ++++ + G++ E ++ GWL+
Sbjct: 8 RRRADPGADGEASRDDGATSSVSALKRLERSQWTDKMDLRFGFERLKEPGEKTGWLINMH 67
Query: 51 SSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYES 110
+ + DED R + S +D YF+ DGS FK ++PYFY AT++ E +V ++L ++++
Sbjct: 68 PTEILDEDKR-LGSAVDYYFIQDDGSRFKVALPYKPYFYIATRKGCEREVSSFLSKKFQG 126
Query: 111 QIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEA 170
+IA +E + KEDLDL NHL GL ++Y+++SF TV+ L+ V+K++ V++N+ + A++A
Sbjct: 127 KIAKVETVPKEDLDLPNHLVGLKRNYIRLSFHTVEDLVKVRKEISPAVKKNREQDHASDA 186
Query: 171 YESILTG------------KREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDV 218
Y ++L+ + ++ D LD IVD+REYDVPYHIR +ID + WY+V
Sbjct: 187 YTALLSSVLQRGGVITDEEETSKKIADQLDNIVDMREYDVPYHIRLSIDLKIHVAHWYNV 246
Query: 219 SISSTGPLLE--KRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYL 276
+E +R DL++R + V AFDIETTKLPLKFPDA+ D IMMISYM+DGQGYL
Sbjct: 247 RYRGNAFPVEITRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYL 306
Query: 277 IINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDY 336
I NRE V EDIED E+TPKPE+EG F V N +E L++ WF H+QE KP I VTYNGD+
Sbjct: 307 ITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDF 366
Query: 337 FDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLK 396
FDWPF+E RAA HG M +E+GFQ D +QGE +A H+DC WVKRDSYLP GS LK
Sbjct: 367 FDWPFVEARAAVHGLSMQQEIGFQKD-SQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLK 425
Query: 397 AVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATII 456
A KAKLGYDP+E++PEDM R A E+PQ +A+YSVSDAVATYYLYM YVHPFIF+L TII
Sbjct: 426 AAAKAKLGYDPVELDPEDMCRMATEQPQTLATYSVSDAVATYYLYMKYVHPFIFALCTII 485
Query: 457 PMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRN-HLLESETYIGGHVE 515
PM PDEVLRKGSGTLCE LLMVQA+ AN+I PNK + + K + H+L+SETY+GGHVE
Sbjct: 486 PMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQEFNKLTDDGHVLDSETYVGGHVE 545
Query: 516 CLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIME 575
LESGVFRSD+P F+++P+A++ LL +++ L++A++ E K+ +E V+N++EV + I
Sbjct: 546 ALESGVFRSDIPCRFRMNPAAFDFLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKS 605
Query: 576 KLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLR 635
KL L++ P R ECPLIYHLDV AMYPNIILTNRLQP ++V + C ACDFN+PG C R
Sbjct: 606 KLASLKDVPSRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGANCQR 665
Query: 636 KLEWVWRGEIFMGKRSDYYHLKKQIESE-----FVDGTNGHLSKSFLDLPKMEQQSRLKD 690
K+ W WRGE RS+Y+ ++ Q+ESE F +G +++F +L + EQ K
Sbjct: 666 KMAWQWRGEFMPASRSEYHRIQHQLESEKFPPLFPEGP----ARAFHELSREEQAKYEKR 721
Query: 691 RLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLS 750
RL YC+KAYK++ V E R IC RENSFYVDTVR+FRDRRYE+KGL+KVWK KLS
Sbjct: 722 RLADYCRKAYKKIHITKVEE-RLTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLS 780
Query: 751 EAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGA 810
A G++ +++ ++M VLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAG+V +TGA
Sbjct: 781 AAVEVGDAAEVKRCKNMEVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGA 840
Query: 811 KIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKK-KLTISYPCVMLNVD 869
II AR LIE+IG+PLELDTDGIWCVLP SFPENF FKT ++KK K+TISYP MLN+
Sbjct: 841 NIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVFKTTNVKKPKVTISYPGAMLNIM 900
Query: 870 VARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFN 929
V TNDQYQ L +P S TY T SE SI FEVDGPY AMILPASKEEG +KKRYAVFN
Sbjct: 901 VKEGFTNDQYQELAEPSSLTYVTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFN 960
Query: 930 DDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQ 989
+DG+LAELKGFE+KRRGEL+LIK+FQ+ +F+ FL GST+EE Y +VA VA+ WLD+L ++
Sbjct: 961 EDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGSTLEEVYGSVAKVADYWLDVLYSK 1020
Query: 990 GKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIV 1049
++ DSEL + ISE+ +MS+ L DYGEQKS +++TA+RL++FLGD MVKD GL C+YI+
Sbjct: 1021 AANMPDSELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYII 1080
Query: 1050 ACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSS--DVGIRSIVDWSYYKQRLSSA 1107
+ +P+G+PV+ERA+P+AIF+ + + K +LRKW K+SS D IR+I+DW YY +RL SA
Sbjct: 1081 SRKPEGSPVTERAIPLAIFQAEPTVRKHFLRKWLKSSSLQDFDIRAILDWDYYIERLGSA 1140
Query: 1108 IQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKDDFLNKTC 1167
IQKIITIPAA+Q+V NPVPRV HPDWL+KK+ EK D ++Q+K+ ++F+ +
Sbjct: 1141 IQKIITIPAALQQVKNPVPRVKHPDWLHKKLLEKNDVYKQKKISELFTLEGRRQV--TMA 1198
Query: 1168 NAETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLRQQLEPS 1227
A + + D+EDF V P P V ++K V Q +S Q L P+
Sbjct: 1199 EASEDSPRPSAPDMEDF-----GLVKLPHPAA---PVTVKRKRVLWESQEES--QDLTPT 1248
Query: 1228 ----EVSDQQPSSQNAIDTENIDRIVDYKGWLELKKRKW----KDNLDRRKKQKLGSLRA 1279
E+ Q P A+ T + +V WL K+KW + L RRK+Q+L S
Sbjct: 1249 VPWQEILGQPP----ALGTSQEEWLV----WLRFHKKKWQLQARQRLARRKRQRLESAEG 1300
Query: 1280 SHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWV 1339
+ + + TG+GS+ RR ++ WQI+Q+ +SQ+G+F W
Sbjct: 1301 VLRPGAIRDGPA-----------TGLGSFLRRTARSILDLPWQIVQISETSQAGLFRLWA 1349
Query: 1340 VVEGIMVRIPITVPRLFYLNSKDPIVEKFPG-RRVNKTLPHGRRSFNLIEVMIDEDQFRK 1398
+V + I +++PR+FY+N + E+ R+VN+ LP +NL E + ED +++
Sbjct: 1350 LVGSDLHCIRLSIPRVFYVNQRVAKAEEGASYRKVNRVLPRSNMVYNLYEYSVPEDMYQE 1409
Query: 1399 ESKKLAALLADPEVE 1413
++ A L+ P++E
Sbjct: 1410 HINEINAELSAPDIE 1424
Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 192/609 (31%), Positives = 306/609 (50%), Gaps = 70/609 (11%)
Query: 1442 LARYAHILWISDDGVPDLGGTSEEDECFA---DEVHQPVLTYPGAYRKVSVELKIHHLSV 1498
L R+ H+LW+S PDLGG +D C D+ + G Y V VEL + +L+V
Sbjct: 1677 LQRHNHLLWLSPTARPDLGGKEADDNCLVMEFDDQATVEINSSGCYSTVCVELDLQNLAV 1736
Query: 1499 NALLKSNQVNEMEGGGLFGFDQD----------MNSGPYNNELCGFDETTSSAPAFRVVK 1548
N +L+S+ VN+MEG G D + G + +DET + FR++K
Sbjct: 1737 NTILQSHHVNDMEGADSMGISFDVIQQASLEDMITGGQAASAPASYDETALCSNTFRILK 1796
Query: 1549 QLIQRCLTDAVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEF 1608
++ + + N++AD + H YRWL SP S LHDP LHR LH +M+K+F L+AEF
Sbjct: 1797 SMVVGWVKEITQYHNIYADNQVMHFYRWLRSPSSLLHDPALHRTLHNMMKKLFLQLIAEF 1856
Query: 1609 RKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLF 1668
++LG+++I+ANF+++I+ T K + A AY + + ++ ++E F + + W LL+
Sbjct: 1857 KRLGSSVIYANFNRIILCTKKRRVEDAIAYVEYITSSIHSKETFHSLTISFSRCWEFLLW 1916
Query: 1669 MDQYNYGGIPARADESLD---DDSQV-------------------------------DIV 1694
MD NYGGI + + DSQ D++
Sbjct: 1917 MDPSNYGGIKGKVSSRIHCGLQDSQKAGGAEDEQENEDDEEERDGEEEEEAEESNVEDLL 1976
Query: 1695 -SSWNIAEYLPK--EIQDHFVLVVSEFMYIPWKHAQKLAASRASLQEGSSCTPSITVAAA 1751
++WNI ++LP+ Q++F+++VS ++ + H K R++ GS+ +
Sbjct: 1977 ENNWNILQFLPQAASCQNYFLMIVSAYIVAVY-HCMKDGLRRSA--PGSTPVRRRGASQL 2033
Query: 1752 ENFESHIVQYVKGEIS---SYFTGKLLSIVRDAIHHMKKMNNDQHNSPGVMQT-----AA 1803
V + G I+ Y +L ++K NS + + +
Sbjct: 2034 SQEAEGAVGALPGMITFSQDYVANELTQSFFTITQKIQKKVTGSRNSTELSEMFPVLPGS 2093
Query: 1804 NIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFIL 1863
++ + LEFIK+VC +LD N+ + V + ++LL+ V V EF+ EA+FRDPC S++L
Sbjct: 2094 HLLLNNPALEFIKYVCKVLSLDTNITNQVNKLNRDLLRLVDVGEFSEEAQFRDPCRSYVL 2153
Query: 1864 PNVICSYCNDCRDLDLCRDM------ALLAQDWHCAMPQCGQPYDREVMENALLQIVRQR 1917
P VIC CN CRDLDLC+D A+L Q W C+ C PYD +E L+++++++
Sbjct: 2154 PEVICRSCNFCRDLDLCKDSSFSEDGAVLPQ-WLCS--NCQAPYDSSAIEMTLVEVLQKK 2210
Query: 1918 ERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLL 1977
+ LQDLVC++C VK + C+CAG F F ++ IF NIA G L
Sbjct: 2211 LMAFTLQDLVCLKCRGVKETSMPVYCSCAGDFALTIHTQVFMEQIGIFRNIAQHYGMSYL 2270
Query: 1978 QECTSWILE 1986
E W+L+
Sbjct: 2271 LETLEWLLQ 2279
>sp|Q9WVF7|DPOE1_MOUSE DNA polymerase epsilon catalytic subunit A OS=Mus musculus GN=Pole
PE=2 SV=3
Length = 2283
Score = 1430 bits (3702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/1419 (51%), Positives = 972/1419 (68%), Gaps = 67/1419 (4%)
Query: 25 EELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKYKF 84
++++ + G++ E +R GWL+ + + DED R V S +D YF+ DGS FK +
Sbjct: 42 DKMDLRFGFERLKEPGERTGWLINMHPTEILDEDKRLV-SAVDYYFIQDDGSRFKVALPY 100
Query: 85 RPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTV 144
PYFY A ++ + +V ++L ++++ +IA +E + KEDLDL NHL GL +SY+K+SF TV
Sbjct: 101 MPYFYIAARKGCDREVSSFLSKKFQGKIAKLENVPKEDLDLPNHLVGLKRSYIKLSFHTV 160
Query: 145 QQLMDVKKDLLHVVERNQAKFDAAEAYESILTG------------KREQRPQDFLDCIVD 192
+ L+ V+K++ V++N+ + A++ Y ++L+ + ++ D LD IVD
Sbjct: 161 EDLVKVRKEISPAVKKNREQDHASDEYTTMLSSILQGGSVITDEDETSKKIADQLDNIVD 220
Query: 193 LREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLE--KRVDLLQRAEVHVCAFDIETTK 250
+REYDVPYHIR +ID + WY+V +E +R DL++R + V AFDIETTK
Sbjct: 221 MREYDVPYHIRLSIDLRIHVAHWYNVRFRGNAFPVEITRRDDLVERPDPVVLAFDIETTK 280
Query: 251 LPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNE 310
LPLKFPDA+ D IMMISYM+DGQGYLI NRE V EDIED E+TPKPE+EG F V N +E
Sbjct: 281 LPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDE 340
Query: 311 IELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRA 370
+ L++ WF H+QE KP I VTYNGD+FDWPF+E RAA HG M +E+GFQ D +QGE +A
Sbjct: 341 VHLIQRWFEHIQETKPTIMVTYNGDFFDWPFVEARAAIHGLSMYQEIGFQKD-SQGEYKA 399
Query: 371 KFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYS 430
H+DC WVKRDSYLP GS LKA KAKLGYDP+E++PEDM R A E+PQ +A+YS
Sbjct: 400 PQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCRMATEQPQTLATYS 459
Query: 431 VSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNK 490
VSDAVATYYLYM YVHPFIF+L TIIPM PDEVLRKGSGTLCE LLMVQA+ AN+I PNK
Sbjct: 460 VSDAVATYYLYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNK 519
Query: 491 HQSDPEKFYRN-HLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQ 549
+ + K + H+L++ETY+GGHVE LESGVFRSD+P F+++P+A++ LL +++ ++
Sbjct: 520 QEQEFNKLTDDGHMLDAETYVGGHVEALESGVFRSDIPCRFRMNPAAFDFLLQRVEKTMR 579
Query: 550 YAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNR 609
+AI+ E K+ +E +N+ EV I KL L++ P R ECPLIYHLDV AMYPNIILTNR
Sbjct: 580 HAIEEEEKVPVEQATNFQEVCEQIKTKLTSLKDVPNRIECPLIYHLDVGAMYPNIILTNR 639
Query: 610 LQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESE-----F 664
LQP +IV + C ACDFN+PG +C RK+ W WRGE RS+Y+ ++ Q+ESE F
Sbjct: 640 LQPSAIVDEATCAACDFNKPGASCQRKMAWQWRGEFMPASRSEYHRIQHQLESEKFPPLF 699
Query: 665 VDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFY 724
+G +++F +L + EQ K RL YC+KAYK++ V E R IC RENSFY
Sbjct: 700 PEGP----ARAFHELSREEQAKYEKRRLADYCRKAYKKIHVTKVEE-RLTTICQRENSFY 754
Query: 725 VDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNS 784
VDTVR+FRDRRYE+KGL+KVWK KLS A G++ +++ ++M +LYDSLQLAHKCILNS
Sbjct: 755 VDTVRAFRDRRYEFKGLHKVWKKKLSAAVEVGDASEVKRCKNMEILYDSLQLAHKCILNS 814
Query: 785 FYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPE 844
FYGYVMRKGARWYSMEMAG+V +TGA II AR LIE+IG+PLELDTDGIWCVLP SFPE
Sbjct: 815 FYGYVMRKGARWYSMEMAGIVCFTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFPE 874
Query: 845 NFTFKTKDLKK-KLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVD 903
NF KT + KK KLTISYP MLN+ V TN QYQ L +P S TY THSE SI FEVD
Sbjct: 875 NFVIKTTNAKKPKLTISYPGAMLNIMVKEGFTNHQYQELTEPSSLTYVTHSENSIFFEVD 934
Query: 904 GPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFL 963
GPY AMILPASKEEG +KKRYAVFN+DG+LAELKGFE+KRRGEL+LIK+FQ+ +F+ FL
Sbjct: 935 GPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFL 994
Query: 964 HGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAV 1023
GST+EE Y +VA VA+ WLD+L ++ ++ DSEL + ISE+ +MS+ L DYGEQKS ++
Sbjct: 995 KGSTLEEVYGSVAKVADYWLDVLYSKAANMPDSELFELISENRSMSRKLEDYGEQKSTSI 1054
Query: 1024 TTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWC 1083
+TA+RL++FLGD MVKD GL C+YI++ +P+G+PV+ERA+P+AIF+ + + K +LRKW
Sbjct: 1055 STAKRLAEFLGDQMVKDAGLSCRYIISRKPEGSPVTERAIPLAIFQAEPTVRKHFLRKWL 1114
Query: 1084 KTSS--DVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREK 1141
K+SS D IR+I+DW YY +RL SAIQKIITIPAA+Q+V NPVPRV HPDWL+KK+ EK
Sbjct: 1115 KSSSLQDFDIRTILDWDYYIERLGSAIQKIITIPAALQQVKNPVPRVKHPDWLHKKLLEK 1174
Query: 1142 EDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLED--FPKKRRNSVNGPRPIV 1199
D ++Q+K+ ++F K + A N + D+ED K ++V
Sbjct: 1175 NDIYKQKKISELFVLEGKRQIV--MAQASENSLSLCTPDMEDIGLTKPHHSTVPVATKRK 1232
Query: 1200 RCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKK 1259
R +E E + + T + EV Q PS + T + +V WL+ K
Sbjct: 1233 RVWETQKESQDIALT---------VPWQEVLGQPPS----LGTTQEEWLV----WLQFHK 1275
Query: 1260 RKW----KDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETA 1315
+KW + L RKKQ+L S + + E TG+GS+ RR +
Sbjct: 1276 KKWQLQAQQRLALRKKQRLESAEDMPRLGPIREGPS-----------TGLGSFLRRTARS 1324
Query: 1316 MTRCHWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPG-RRVN 1374
+ WQIIQ+ + Q+G+F W ++ + I +++PR+FY+N + E P R+VN
Sbjct: 1325 IMDLPWQIIQISETRQAGLFRLWAIIGNDLHCIKLSIPRVFYVNQRVAKAEDGPAYRKVN 1384
Query: 1375 KTLPHGRRSFNLIEVMIDEDQFRKESKKLAALLADPEVE 1413
+ LP +NL E + ED +++ ++ L+ P++E
Sbjct: 1385 RALPRSNIVYNLYEYSVPEDMYQEHINEINTELSVPDIE 1423
Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 196/609 (32%), Positives = 320/609 (52%), Gaps = 70/609 (11%)
Query: 1442 LARYAHILWISDDGVPDLGGTSEEDECFA---DEVHQPVLTYPGAYRKVSVELKIHHLSV 1498
L + H+LW+S PDLGG +D D+ + G Y V VEL I +L+V
Sbjct: 1676 LQHHNHLLWLSPTSRPDLGGKEADDNRLVMEFDDRATVEINSSGCYSTVCVELDIQNLAV 1735
Query: 1499 NALLKSNQVNEMEGGGLFG--FD-------QDMNSG-PYNNELCGFDETTSSAPAFRVVK 1548
N +L+S+ VN+MEG G G FD +DM +G + L +DET + FR++K
Sbjct: 1736 NTILQSHHVNDMEGAGSMGISFDVIQQASLEDMVTGNQAASALANYDETALCSSTFRILK 1795
Query: 1549 QLIQRCLTDAVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEF 1608
++ + + N++AD + H YRWL SP S LHDP LHR LH +M+K+F L+AEF
Sbjct: 1796 SMVVGWVKEITQYHNIYADNQVMHFYRWLQSPCSLLHDPALHRTLHNMMKKLFLQLIAEF 1855
Query: 1609 RKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLF 1668
++LG+++++ANF+++I+ T K + A AY + + ++ ++E+F + + W LL+
Sbjct: 1856 KRLGSSVVYANFNRIILCTKKRRIEDALAYVEYITNSIHSKEIFHSLTISFSRCWEFLLW 1915
Query: 1669 MDQYNYGGIPARADESL------DDDSQV--------------------------DIV-S 1695
MD NYGGI + S+ + DSQ D++ +
Sbjct: 1916 MDPSNYGGIKGKVPSSIHCGQVKEQDSQAREETDEEEEDKEKDEEEEGMGESEVEDLLEN 1975
Query: 1696 SWNIAEYLPK--EIQDHFVLVVSEFMYIPWKHAQK-----LAASRASLQEGSSCTPSITV 1748
+WNI ++LP+ Q +F+++VS ++ ++ ++ S ++G+S +
Sbjct: 1976 NWNILQFLPQAASCQSYFLMIVSAYIVAVYQSMKEELRHSAPGSTPVKRKGASQFSQESE 2035
Query: 1749 AAAENFESHIV---QYVKGEIS-SYFTGKLLSIVRDAIHHMKKMNNDQHNSPGVMQTAAN 1804
A + I YV E++ S+FT + ++ + + P + ++
Sbjct: 2036 GATGSLPGMITFSQDYVANELTQSFFT--ITQKIQKKVTGSRNTTEPSEMFP--VLPGSH 2091
Query: 1805 IHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFILP 1864
+ + LEFIK+VC +LD N+ + V + ++LL+ V V EF+ EA+FRDPC S++LP
Sbjct: 2092 LLLNNPALEFIKYVCKVLSLDTNITNQVNKLNRDLLRLVDVGEFSEEAQFRDPCHSYVLP 2151
Query: 1865 NVICSYCNDCRDLDLCRDM------ALLAQDWHCAMPQCGQPYDREVMENALLQIVRQRE 1918
VIC CN CRDLDLC+D A+L Q W C+ C PYD +E+AL++ ++++
Sbjct: 2152 EVICHSCNFCRDLDLCKDSSFSQDGAILPQ-WLCS--NCQAPYDSSAIESALVEALQRKL 2208
Query: 1919 RLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQ 1978
+ LQDLVC++C +K H+ C+CAG F F +++IF NIA LQ
Sbjct: 2209 MAFTLQDLVCLKCRGMKETHMPVYCSCAGDFTLTIRTEVFMEQIRIFQNIAKYYSMSYLQ 2268
Query: 1979 ECTSWILEV 1987
E W+L+
Sbjct: 2269 ETIEWLLQT 2277
>sp|Q4WXH8|DPOE_ASPFU DNA polymerase epsilon catalytic subunit A OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=pol2 PE=3 SV=1
Length = 2230
Score = 1383 bits (3579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/1433 (50%), Positives = 960/1433 (66%), Gaps = 88/1433 (6%)
Query: 15 KKQKLIRSAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQD 74
+K + IR A EA LG+ F G+KR+GWL+ S+S+ED + + +D YF+
Sbjct: 43 EKFEAIRLANSIDEA-LGFPRFESGEKRVGWLINMHSTSIEDPNVPGGRAGVDYYFLEDG 101
Query: 75 GSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHK 134
G +FK+ ++ PYF A K+ E +VE + RR +E I I+ +EKEDL L NHL G +
Sbjct: 102 GGSFKATVEYDPYFLLAVKKGHEAEVEEWCRRMFEGLIKTIKRVEKEDLQLPNHLLGHRR 161
Query: 135 SYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGK-----------REQRP 183
++L+++F V L+DV+K LL + E+N+ + + Y I + E RP
Sbjct: 162 TFLQLNFANVSHLLDVRKTLLPLAEKNKKNVNVMDTYAEISSANAGFDLFDDELINESRP 221
Query: 184 QDFL---DCIVDLREYDVPYHIRFAIDNDVRCGQWYDVS-----ISSTGPLLEKRVDLLQ 235
+ D I+D+REYDVPYH+R AID D+R G+WY V IS T LE+R LQ
Sbjct: 222 NSNMNASDYIIDIREYDVPYHVRVAIDKDIRIGKWYTVEAKHGVISLT--CLEER---LQ 276
Query: 236 RAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPK 295
RA+ + AFDIETTKLPLKFPD+ D IMMISYM+DGQG+LI NRE V EDI D EYTPK
Sbjct: 277 RADPVILAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDIRDFEYTPK 336
Query: 296 PEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSE 355
PE+ G F + N NE ++ +F H++E KP + TYNGD+FDWPF+E RA+ G M +
Sbjct: 337 PEYSGPFMIFNEPNERSVIERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGIDMYK 396
Query: 356 ELGFQCDKNQGECRAKFAC-HLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPED 414
E+GF+ KN + C H+DCFAWV RDSYLPQGS+GLKAVT AKLGYDP E++PE
Sbjct: 397 EIGFR--KNSEDIYQSDHCVHMDCFAWVNRDSYLPQGSRGLKAVTVAKLGYDPDELDPEL 454
Query: 415 MVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEM 474
M +A E+PQ +A YSVSDAVATYYLYM YVHPFIFSL TIIP++PD+ LRKG+GTLCEM
Sbjct: 455 MTPYASERPQTLAEYSVSDAVATYYLYMKYVHPFIFSLCTIIPLNPDDTLRKGTGTLCEM 514
Query: 475 LLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDP 534
LLMVQAYK ++ PNKH+ PE FY HLLESETY+GGHVE +E+GVFRSD+P +F +D
Sbjct: 515 LLMVQAYKGEIVLPNKHKDPPESFYEGHLLESETYVGGHVESIEAGVFRSDIPVTFNIDT 574
Query: 535 SAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYH 594
+A ++LL +LD L+++I+VE K ++ V NY++VK I E+L+ L+E+P R+E P IYH
Sbjct: 575 TAIDELLRDLDAALKFSIEVEEKKSMDDVVNYEDVKAQIAERLVNLREKPHRDEVPSIYH 634
Query: 595 LDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYY 654
LDVA+MYPNI++TNRLQP S++ + C ACDFNRPGKTC R+L W WRGE KR +Y
Sbjct: 635 LDVASMYPNIMITNRLQPDSMIQESDCAACDFNRPGKTCDRRLPWAWRGEFLPAKRDEYN 694
Query: 655 HLKKQIESEFVDG-TNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELRE 713
+++ + +E G T +SF ++ EQ + +K RL+ Y +K Y ++ D T +RE
Sbjct: 695 MIRQAVANELFPGRTKNSPMRSFGEMSAEEQAAIIKKRLQDYSKKIYHKIHDSK-TIVRE 753
Query: 714 AGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLS-EAKASGNSIKIQEAQDMVVLYD 772
A IC REN FYVDTVRSFRDRRY++KG KVWKGK A ++ +I+EA+ M+VL+D
Sbjct: 754 AIICQRENPFYVDTVRSFRDRRYDFKGKQKVWKGKTEALKAAGASAAEIEEAKKMIVLFD 813
Query: 773 SLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTD 832
SLQLAHK ILNSFYGYVMRKG+RWYSMEMAGV TGA IIQ AR L+E+IG+PLELDTD
Sbjct: 814 SLQLAHKVILNSFYGYVMRKGSRWYSMEMAGVTCLTGAHIIQMARELVERIGRPLELDTD 873
Query: 833 GIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYET 892
GIWC+LPGSFPE+F+F K+ KKL ISYPCVMLN V TN QYQTLVDP + YET
Sbjct: 874 GIWCMLPGSFPEDFSFTLKN-GKKLGISYPCVMLNHLVHGKYTNHQYQTLVDPKTFRYET 932
Query: 893 HSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIK 952
HS+ SI FEVDGPYKAMILP SKEE +KKRYAVFN DG+LAELKGFE+KRRGELKLIK
Sbjct: 933 HSDNSIFFEVDGPYKAMILPTSKEEDKNLKKRYAVFNHDGSLAELKGFEVKRRGELKLIK 992
Query: 953 VFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSL 1012
+FQ ++F FL GST+EE Y+AVA VA+RWLD+L + G +AD ELI+ ISE+ +M+K+L
Sbjct: 993 IFQTQIFRFFLEGSTLEETYAAVARVADRWLDVLYDHGATLADEELIELISENRSMTKTL 1052
Query: 1013 ADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDA 1072
+YG QKS ++TTARRL++FLG+ MVKDKGL C+YI++ +P+ TPV+ERA+PV IF +
Sbjct: 1053 EEYGNQKSTSITTARRLAEFLGEQMVKDKGLNCKYIISAKPKNTPVTERAIPVTIFSAEE 1112
Query: 1073 EIMKFYLRKWCKTS-SDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHP 1131
+ +F+LRKW K D+ RS++DW YY +RL S +QK+ITIPAA+QKV NPVPRV HP
Sbjct: 1113 PVKRFFLRKWLKDDPGDMDPRSVIDWDYYLERLGSVVQKLITIPAALQKVRNPVPRVAHP 1172
Query: 1132 DWLYKKVREKEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNS 1191
DWL +++ KEDKF+Q K+ D+F +K N N TN++D V+ D + NS
Sbjct: 1173 DWLQRRINMKEDKFKQTKMTDMFGKTEK----NPLSNISTNILDHRVQHHGDIGEAVANS 1228
Query: 1192 V----NGPRPIVRCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDR 1247
+ P + + E T D SL P+ +++
Sbjct: 1229 TQKLKSSPNGKISQKRKHPEGLTKTLLDPFASL-------------PAIMPSLND----- 1270
Query: 1248 IVDYKGWLELKKRKWKDNLD--RRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGV 1305
DY G+L+ +K+KWK R++Q G + N ++SL ++
Sbjct: 1271 --DYVGFLKYQKQKWKIQKQARARRRQLFG-----ERVNVATDSLSNL------------ 1311
Query: 1306 GSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSK---- 1361
FR Q + WQI+QL + + G+ A+V+++ + + I VPR Y+N K
Sbjct: 1312 ---FRNQAELLYINTWQILQLCETGRPGLVRAFVLIDRKIHALTIKVPRQIYVNLKRDSL 1368
Query: 1362 -DPIVEKFPGRRVNKTLPHGRRSFNLIEVMIDEDQFRKESKKLAALLADPEVE 1413
D V +VN TLP+G S +L ++ + ED + +E+ K+ ALL P +E
Sbjct: 1369 PDVDVPDCEVEKVNHTLPNGHPSVHLFKLTLSEDTYLRETDKIDALLQHPSIE 1421
Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 176/632 (27%), Positives = 289/632 (45%), Gaps = 71/632 (11%)
Query: 1407 LADPEVEVLGWQQNAAKIGMQRCAASSQWFNERISLARYAHI------------------ 1448
++D ++ LGWQ AK + + W + LARY +
Sbjct: 1616 VSDMDLPPLGWQSFIAKRLVTHYLYLASWIHHLTMLARYGDVPLCNLENDDPRYLIDISY 1675
Query: 1449 ----------LWISDDGVPDLGGTSEEDECFADE-VHQPVLTYPGAYRKVSVELKIHHLS 1497
LW S+ PD G ++D + E V P + P AY V +EL++ +LS
Sbjct: 1676 ARRLQQNNVVLWWSNGPRPDHAGYEKDDVTGSLERVSMPSVNVPSAYNTVCIELEVRNLS 1735
Query: 1498 VNALLKSNQVNEMEGGGLFGFDQDMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTD 1557
+N +L S+ +NE+EG S N + E ++ V++++++ ++
Sbjct: 1736 INTILTSSIINELEGADTL-LASSEPSADANGSGVLYSEKAFASAGAVVLREMVKHWWSE 1794
Query: 1558 AVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIF 1617
A GN AD ++QHL RW+ SP S L+D LH + + +K F L+AEFR++G+ +IF
Sbjct: 1795 AC-EGNNMADIMVQHLIRWVESPVSCLYDRSLHDYVRMLSRKSFQRLMAEFRRVGSNVIF 1853
Query: 1618 ANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGI 1677
A+ +++++ T K ++ A AY +LK+++ F +I+LE +W L++ D+YNYGG
Sbjct: 1854 ASPTRLLLQTTKTEVGNAYAYSQYVLKSIRANASFHFIDLEIKEYWDYLVWYDEYNYGGK 1913
Query: 1678 PARADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQ 1737
R +D +++ V W ++ +LP +Q F V E YI H K S
Sbjct: 1914 GCRKVTG-SEDQELETVMHWQLSRFLPAPMQTIFHDWVVE--YIELMHGLKRTDS----- 1965
Query: 1738 EGSSCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMKKMNNDQ--HNS 1795
S TP +T N EI+S K ++ I + + D+ H
Sbjct: 1966 -DDSSTPRLTQLPVGNHNED-----NDEITSILAEKFSKPLKKQISGLIRRQRDELLHPE 2019
Query: 1796 ----------PGVMQTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRV 1845
PGV+ N K + LE +K + +L + + ++R+ LL V
Sbjct: 2020 LASDYVFPVLPGVLVDPNN-DKRNPVLELVKLLMQVLSLSKTTTLETRLLRRELLAMFEV 2078
Query: 1846 REFAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALLAQ-----------DWHCAM 1894
REF+ E F +P S LP + C+ C RDLDLCRD +L + W C
Sbjct: 2079 REFSKEGRFENPGASLKLPELSCNACCLIRDLDLCRDEDVLPEMGSDPNKAAPKPWRC-- 2136
Query: 1895 PQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKED 1954
P C YDR E AL+ V+ + QDL C +C +K + E C+C+G + D
Sbjct: 2137 PFCQTEYDRLAQEEALIGQVQGLIVGWQTQDLKCSKCGGLKISDFMEHCSCSGHWVETMD 2196
Query: 1955 ASDFRSKMQIFLNIANRQGFQLLQECTSWILE 1986
++ K+ + +++ G +LL+ +LE
Sbjct: 2197 RNEVEKKLLLLSSVSKFHGLKLLESVVQGVLE 2228
>sp|O93845|DPOE_EMENI DNA polymerase epsilon catalytic subunit A OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=pol2 PE=3 SV=2
Length = 2207
Score = 1380 bits (3571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/1397 (50%), Positives = 945/1397 (67%), Gaps = 66/1397 (4%)
Query: 27 LEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKYKFRP 86
++ LG+ F G+KR+GWL+ S+S+ED + + +D YF+ DG +FK+ ++ P
Sbjct: 54 IDESLGFPRFEAGEKRVGWLINMHSTSIEDPNVPGGRAGVDYYFLDDDGGSFKATVEYDP 113
Query: 87 YFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQ 146
YF A K E +VE + RR +E I I+ + KEDL L NHL G +++L++ F V
Sbjct: 114 YFLIAVKTGHEAEVEEWCRRMFEGLIKKIKRVVKEDLKLPNHLLGHRRTFLQLDFANVSH 173
Query: 147 LMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAI 206
L++V+K LL + E+N+ R + D I+D+REYDVPYH+R AI
Sbjct: 174 LLEVRKTLLPLAEKNRK-------------NARPNGTTNASDFIIDIREYDVPYHVRVAI 220
Query: 207 DNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMI 266
D D+R G+WY V + L + L RA+ V AFDIETTKLPLKFPD+ D IMMI
Sbjct: 221 DKDIRIGKWYTVEATHGIISLTCLEERLTRADPVVLAFDIETTKLPLKFPDSVIDQIMMI 280
Query: 267 SYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKP 326
SYM+DGQG+LI NRE V EDI+D EYTPKPE+ G F + N NE ++ +F H++E KP
Sbjct: 281 SYMIDGQGFLITNREIVSEDIDDFEYTPKPEYSGPFMIFNEPNERAVIERFFEHIKEAKP 340
Query: 327 GIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFAC-HLDCFAWVKRD 385
+ TYNGD+FDWPF+E RA+ G M +E+GF+ KN + C H+DCFAWV RD
Sbjct: 341 TVIATYNGDFFDWPFVEARASVLGIDMYKEIGFR--KNSEDIYQSDHCAHMDCFAWVNRD 398
Query: 386 SYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYV 445
SYLPQGS+GLKAVT AKLGYDP E++PE M +A E+PQ +A YSVSDAVATYYLYM Y+
Sbjct: 399 SYLPQGSRGLKAVTVAKLGYDPDELDPELMTPYASERPQTLAEYSVSDAVATYYLYMKYI 458
Query: 446 HPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLE 505
HPFIFSL TI+P++PD+ LRKG+GTLCEMLLMVQAYK N++ PNKH+ PE FY HLLE
Sbjct: 459 HPFIFSLCTILPLNPDDTLRKGTGTLCEMLLMVQAYKGNIVLPNKHKDPPEAFYEGHLLE 518
Query: 506 SETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSN 565
SETY+GGHVE +E+GVFRSD+P F +DP+A ++LL +LD L+++I+VE K L+ V+N
Sbjct: 519 SETYVGGHVESIEAGVFRSDIPVPFNIDPTAVDELLRDLDAALKFSIEVEEKKSLDDVTN 578
Query: 566 YDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACD 625
Y+EVK I + L L+E P R E P IYHLDVA+MYPNI++TNRLQP S++ + C ACD
Sbjct: 579 YEEVKGQIAKLLTDLRENPHRNEVPFIYHLDVASMYPNIMITNRLQPDSLIQESNCAACD 638
Query: 626 FNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDG-TNGHLSKSFLDLPKMEQ 684
FNRPGKTC R+L W WRGE KR +Y +++ +++E G T ++F +L EQ
Sbjct: 639 FNRPGKTCDRRLPWAWRGEFLPAKRDEYNMIRQAVQNERFPGRTKKSPMRAFTELSAEEQ 698
Query: 685 QSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKV 744
+ +K RL+ Y +K Y ++ D T +REA IC REN FYVDTVRSFRDRRY++KG KV
Sbjct: 699 AAIVKKRLQDYSKKIYHKIHDSK-TMVREAIICQRENPFYVDTVRSFRDRRYDFKGKQKV 757
Query: 745 WKGKLSEAKASGN-SIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAG 803
WKGK K+SG + +I+EA+ M+VLYDSLQLAHK ILNSFYGYVMRKG+RWYSMEMAG
Sbjct: 758 WKGKTESLKSSGAPAAEIEEAKKMIVLYDSLQLAHKVILNSFYGYVMRKGSRWYSMEMAG 817
Query: 804 VVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPC 863
V TGA+IIQ AR L+E+IG+PLELDTDGIWC+LPG+FPENF+F K+ KKL ISYPC
Sbjct: 818 VTCLTGARIIQMARELVERIGRPLELDTDGIWCMLPGTFPENFSFTLKN-GKKLGISYPC 876
Query: 864 VMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKK 923
VMLN V + TN QYQ+L +P + YETHSE SI FEVDGPY+AMILP SKEE +KK
Sbjct: 877 VMLNHLVHGSYTNHQYQSLANPATFRYETHSENSIFFEVDGPYRAMILPTSKEEDKNLKK 936
Query: 924 RYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWL 983
RYAVFNDDG+LAELKGFE+KRRGELKLIK+FQ ++F FL G+T+ E Y+AVA VA+RWL
Sbjct: 937 RYAVFNDDGSLAELKGFEVKRRGELKLIKIFQTQIFKFFLEGTTLAETYAAVARVADRWL 996
Query: 984 DLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGL 1043
D+L G +AD ELI+ ISE+ +M+K+L +YG QKS ++TTARRL++FLG+ MVKDKGL
Sbjct: 997 DVLYEHGATLADEELIELISENRSMTKTLEEYGNQKSTSITTARRLAEFLGEQMVKDKGL 1056
Query: 1044 RCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCK-TSSDVGIRSIVDWSYYKQ 1102
C+YI++ P+ TPV+ERA+PV IF + I + +LRKW K D+ RS++DW YY +
Sbjct: 1057 NCKYIISARPRNTPVTERAIPVTIFSAEDSIKRHFLRKWLKDDPGDMDPRSVIDWDYYLE 1116
Query: 1103 RLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKDDF 1162
RL S +QK+ITIPAA+QK+ NPVPRV HP+WL +++ +++D+F+Q K+ D+F +K
Sbjct: 1117 RLGSVVQKLITIPAALQKIRNPVPRVAHPEWLQRRINKQDDRFKQVKMTDMFGKSEK--- 1173
Query: 1163 LNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLRQ 1222
N + TN++D V+ ++ + +S+ E+ + + R+
Sbjct: 1174 -NPLSDISTNIIDHRVQHADNLDEAMADSM--------------EKLKSSSPQKASGKRK 1218
Query: 1223 QLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKRKWKDNLDRR-KKQKLGSLRASH 1281
E + P + +ID DY G+L+ +K+KWK R ++++L RA+
Sbjct: 1219 HPENQTKTSLDPFASLPAKMPSIDD--DYVGFLKYQKQKWKIQKQARLRRRQLFGERAN- 1275
Query: 1282 QANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVV 1341
+ GD ++H FR Q + WQ++QL +S+ G+ A+V++
Sbjct: 1276 -------TGGDSLSH-----------LFRNQAELLYISTWQVLQLAETSRPGIVRAFVLI 1317
Query: 1342 EGIMVRIPITVPRLFYLNSK-----DPIVEKFPGRRVNKTLPHGRRSFNLIEVMIDEDQF 1396
+ + + I VPR Y+N K D V + +VN TLP+G S +L ++ + E+ F
Sbjct: 1318 DRKIHALTIKVPRCVYINLKQDSLPDVEVPECEVEKVNHTLPNGHPSVHLFKLTLSEETF 1377
Query: 1397 RKESKKLAALLADPEVE 1413
+E+ K+ LL P VE
Sbjct: 1378 LREADKIHVLLQHPSVE 1394
Score = 224 bits (570), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 170/631 (26%), Positives = 295/631 (46%), Gaps = 66/631 (10%)
Query: 1407 LADPEVEVLGWQQNAAKIGMQRCAASSQWFNERISLARYAHI------------------ 1448
++D + LGWQ AK + S W LARY +
Sbjct: 1588 VSDMNLPPLGWQSFIAKRLVTHYLYLSSWVQHLTMLARYGDVPLCNLESDDPRFLIDISY 1647
Query: 1449 ----------LWISDDGVPDLGGTSEEDECFADE-VHQPVLTYPGAYRKVSVELKIHHLS 1497
LW S PD G ++D E V P + PG+Y V VEL++ +L+
Sbjct: 1648 ARRLQQNNVVLWWSSTAKPDHAGYEKDDITGPLERVGMPCVNVPGSYTTVCVELEVRNLA 1707
Query: 1498 VNALLKSNQVNEMEGGGLFGFDQDMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTD 1557
+N +L S+ +NE EG D ++ + + ++ +SA A V++++++ ++
Sbjct: 1708 INTILTSSIINEAEGADSLLAPSDPSAESSGSGVLYSEKAFASAGAV-VLREMVKHWWSE 1766
Query: 1558 AVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIF 1617
A GN AD ++QHL RW+ SP S L+D LH+ + + +K F L+AEFR++G+ ++F
Sbjct: 1767 AC-QGNNMADIMVQHLIRWVESPASCLYDRSLHQYVRMLSRKSFQQLMAEFRRVGSNVVF 1825
Query: 1618 ANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGI 1677
A+ +++++ T K ++ A AY +LK+++ F +I+L+ +W L++ D+YNYGG
Sbjct: 1826 ASPTRLLLQTSKTEVGNAYAYSQYVLKSIRANPSFHFIDLDIKEYWDYLVWYDEYNYGGK 1885
Query: 1678 PARADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQ 1737
+ + + ++ ++ V W ++ +LP +Q F V E YI H+ K S
Sbjct: 1886 GCQ-EVAETEEQPLETVMHWQLSRFLPTPMQTIFHDWVVE--YIELMHSFKRPES----- 1937
Query: 1738 EGSSCTPSIT-VAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMK-KMNNDQHNS 1795
S TP +T + + + + +S F+ L + I + ++ + + S
Sbjct: 1938 -DDSSTPRLTQIPIGQPEPGQENEELSAALSDRFSKPLKKQISGLIRRQREELLHPELAS 1996
Query: 1796 -------PGVMQTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREF 1848
PGV+ T N K + LE +K + +L + + ++R+ LL VREF
Sbjct: 1997 DYVFPILPGVL-TDPNEEKRNPVLELVKLLMQVLSLSKTTALETRLLRRELLALFEVREF 2055
Query: 1849 APEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALL--------------AQDWHCAM 1894
+ E F +P S +P + CS C RDLDLCRD +L ++ W C
Sbjct: 2056 SKEGRFENPGSSLKIPELTCSACCLIRDLDLCRDEDVLPERGSGSGPDSATSSRPWCC-- 2113
Query: 1895 PQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKED 1954
P C YDR E L+ V + QDL C +C +K + E C+C+G + +
Sbjct: 2114 PFCQTEYDRLAQEEMLIGQVWGMVVAWQTQDLKCSKCGTLKISEFMEHCSCSGQWTETMN 2173
Query: 1955 ASDFRSKMQIFLNIANRQGFQLLQECTSWIL 1985
+D ++++ ++A +LLQ +L
Sbjct: 2174 RADIEKRLKVLESVAKFHELKLLQVVVEEVL 2204
>sp|P21951|DPOE_YEAST DNA polymerase epsilon catalytic subunit A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=POL2 PE=1 SV=1
Length = 2222
Score = 1322 bits (3421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/1409 (48%), Positives = 912/1409 (64%), Gaps = 98/1409 (6%)
Query: 42 RLGWLLTFASSSLEDED------------------TRKVYSCIDLYFVSQDGSTFKSKYK 83
R+GWL ++ + E T + S +D YF+ ++G +FKS
Sbjct: 75 RVGWLTNMHATLVSQETLSSGSNGGGNSNDGERVTTNQGISGVDFYFLDEEGGSFKSTVV 134
Query: 84 FRPYFYAATKEKMEM-DVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFD 142
+ PYF+ A ++ + DVE +++ ES + ++I+ KEDL + NHL GL K+ +K+SF
Sbjct: 135 YDPYFFIACNDESRVNDVEELVKKYLESCLKSLQIIRKEDLTMDNHLLGLQKTLIKLSFV 194
Query: 143 TVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYHI 202
QL + +K L +++ N Y G + D I D+REYDVPYH+
Sbjct: 195 NSNQLFEARKLLRPILQDNANNNVQRNIYNVAANGSEKV---DAKHLIEDIREYDVPYHV 251
Query: 203 RFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDI 262
R +ID D+R G+WY V+ G + + R + A+ V AFDIETTK PLKFPD+ D
Sbjct: 252 RVSIDKDIRVGKWYKVT--QQGFIEDTRK--IAFADPVVMAFDIETTKPPLKFPDSAVDQ 307
Query: 263 IMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQ 322
IMMISYM+DG+G+LI NRE + EDIED EYTPKPE+ G+F + N N+E+ LL+ +F H++
Sbjct: 308 IMMISYMIDGEGFLITNREIISEDIEDFEYTPKPEYPGFFTIFNENDEVALLQRFFEHIR 367
Query: 323 EVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWV 382
+V+P + T+NGD+FDWPF+ R+ HG M +E+GF D +GE ++ + H+DCF WV
Sbjct: 368 DVRPTVISTFNGDFFDWPFIHNRSKIHGLDMFDEIGFAPDA-EGEYKSSYCSHMDCFRWV 426
Query: 383 KRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYM 442
KRDSYLPQGSQGLKAVT++KLGY+P+E++PE M +A EKPQ ++ YSVSDAVATYYLYM
Sbjct: 427 KRDSYLPQGSQGLKAVTQSKLGYNPIELDPELMTPYAFEKPQHLSEYSVSDAVATYYLYM 486
Query: 443 TYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNH 502
YVHPFIFSL TIIP++PDE LRKG+GTLCEMLLMVQAY+ N++ PNKH E+FY H
Sbjct: 487 KYVHPFIFSLCTIIPLNPDETLRKGTGTLCEMLLMVQAYQHNILLPNKHTDPIERFYDGH 546
Query: 503 LLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLES 562
LLESETY+GGHVE LE+GVFRSDL FK+DPSA ++LL L L+++++VE K ++
Sbjct: 547 LLESETYVGGHVESLEAGVFRSDLKNEFKIDPSAIDELLQELPEALKFSVEVENKSSVDK 606
Query: 563 VSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCT 622
V+N++E+KN I +KLL L+E IR E PLIYH+DVA+MYPNI+ TNRLQP SI + C
Sbjct: 607 VTNFEEIKNQITQKLLELKENNIRNELPLIYHVDVASMYPNIMTTNRLQPDSIKAERDCA 666
Query: 623 ACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSK---SFLDL 679
+CDFNRPGKTC RKL+W WRGE F K +Y +K+ +++E N K +F +L
Sbjct: 667 SCDFNRPGKTCARKLKWAWRGEFFPSKMDEYNMIKRALQNETFPNKNKFSKKKVLTFDEL 726
Query: 680 PKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYK 739
+Q +K RL +Y +K Y RV + E REA +C REN FYVDTV+SFRDRRYE+K
Sbjct: 727 SYADQVIHIKKRLTEYSRKVYHRVKVSEIVE-REAIVCQRENPFYVDTVKSFRDRRYEFK 785
Query: 740 GLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSM 799
GL K WKG LS+ S + EA+ M+VLYDSLQLAHK ILNSFYGYVMRKG+RWYSM
Sbjct: 786 GLAKTWKGNLSKIDPSDKHAR-DEAKKMIVLYDSLQLAHKVILNSFYGYVMRKGSRWYSM 844
Query: 800 EMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTI 859
EMAG+ TGA IIQ AR L+E++G+PLELDTDGIWC+LP SFPE + F T + KKL +
Sbjct: 845 EMAGITCLTGATIIQMARALVERVGRPLELDTDGIWCILPKSFPETYFF-TLENGKKLYL 903
Query: 860 SYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGI 919
SYPC MLN V + TN QYQ L DP++ YETHSE +I FEVDGPYKAMILP+SKEEG
Sbjct: 904 SYPCSMLNYRVHQKFTNHQYQELKDPLNYIYETHSENTIFFEVDGPYKAMILPSSKEEGK 963
Query: 920 LIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVA 979
IKKRYAVFN+DG+LAELKGFE+KRRGEL+LIK FQ+++F FL G T+E CYSAVA+V
Sbjct: 964 GIKKRYAVFNEDGSLAELKGFELKRRGELQLIKNFQSDIFKVFLEGDTLEGCYSAVASVC 1023
Query: 980 NRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVK 1039
NRWLD+LD+ G + D +L+ I E+ +MSK+L +Y QKS ++TTARRL DFLG+ MVK
Sbjct: 1024 NRWLDVLDSHGLMLEDEDLVSLICENRSMSKTLKEYEGQKSTSITTARRLGDFLGEDMVK 1083
Query: 1040 DKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSS--DVGIRSIVDW 1097
DKGL+C+YI++ +P PV+ERA+PVAIF D I + +LR+W S D+ IR+I+DW
Sbjct: 1084 DKGLQCKYIISSKPFNAPVTERAIPVAIFSADIPIKRSFLRRWTLDPSLEDLDIRTIIDW 1143
Query: 1098 SYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSL 1157
YY++RL SAIQKIITIPAA+Q VSNPVPRV HPDWL +K+ KEDKF+Q L FS
Sbjct: 1144 GYYRERLGSAIQKIITIPAALQGVSNPVPRVEHPDWLKRKIATKEDKFKQTSLTKFFSKT 1203
Query: 1158 KKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQV 1217
K + K ++D+ED + N I R T K
Sbjct: 1204 KNVPTMGK------------IKDIEDLFEPTVEEDNAKIKIAR---------TTKKKAVS 1242
Query: 1218 DSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKRKWK-DNLDRRKKQKLGS 1276
R QL E PS ++D DY GWL +K KWK DR+++ +L
Sbjct: 1243 KRKRNQLTNEEDPLVLPSEIPSMDE-------DYVGWLNYQKIKWKIQARDRKRRDQLFG 1295
Query: 1277 LRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFL 1336
N ++ R+ +GS R+Q + W+++Q S + GV
Sbjct: 1296 ------------------NTNSSRERSALGSMIRKQAESYANSTWEVLQYKDSGEPGVLE 1337
Query: 1337 AWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRV--------NKTLPHGRRSFN--- 1385
+V + G + I +P+ Y+ K + P +++ + +LP+ ++ N
Sbjct: 1338 VFVTINGKVQNITFHIPKTIYMKFKS---QTMPLQKIKNCLIEKSSASLPNNPKTSNPAG 1394
Query: 1386 --LIEVMIDEDQFRKESKKLAALLADPEV 1412
L ++ + E F +E + ++ D V
Sbjct: 1395 GQLFKITLPESVFLEEKENCTSIFNDENV 1423
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/605 (24%), Positives = 279/605 (46%), Gaps = 48/605 (7%)
Query: 1415 LGWQQNAAKIGMQRCAASSQWFNERISLARYAHI-------------------------- 1448
L WQ K + +S W + I L++Y++I
Sbjct: 1625 LNWQPTLLKKLVNHVLSSGSWISHLIKLSQYSNIPICNLRLDSMDYIIDVLYARKLKKEN 1684
Query: 1449 --LWISDDG-VPDLGGTSEEDEC----FADEVHQPVLTYPGAYRKVSVELKIHHLSVNAL 1501
LW ++ +PD GG + + ++ P + G Y V +++ + +L+VN +
Sbjct: 1685 IVLWWNEKAPLPDHGGIQNDFDLNTSWIMNDSEFPKINNSGVYDNVVLDVGVDNLTVNTI 1744
Query: 1502 LKSNQVNEMEGGGLFGFDQDMN-SGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTDAVT 1560
L S +N+ EG L + ++ N F S A V++ +++ +A+
Sbjct: 1745 LTSALINDAEGSDLVNNNMGIDDKDAVINSPSEFVHDAFSNDALNVLRGMLKEWWDEALK 1804
Query: 1561 SGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANF 1620
N AD ++ L W+ +P++KL D +L +H + +K L+ EF LG+TI++A+
Sbjct: 1805 E-NSTADLLVNSLASWVQNPNAKLFDGLLRYHVHNLTKKALLQLVNEFSALGSTIVYADR 1863
Query: 1621 SKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPAR 1680
++++I T K+ AY ++KA++T +F +++L +W L++MD++N+ G+
Sbjct: 1864 NQILIKTNKYSPENCYAYSQYMMKAVRTNPMFSYLDLNIKRYWDLLIWMDKFNFSGLACI 1923
Query: 1681 ADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQEGS 1740
E ++ VS W + ++L Q F ++M I K S L G+
Sbjct: 1924 EIEE-KENQDYTAVSQWQLKKFLSPIYQPEF----EDWMMIILDSMLKTKQSYLKLNSGT 1978
Query: 1741 SCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMKKMNND-QHNSPGVM 1799
I ++ E + + G S F+ L+ V+ + ++ D Q+ + V+
Sbjct: 1979 QRPTQIVNVKKQDKEDSVENSLNG-FSHLFSKPLMKRVKKLFKNQQEFILDPQYEADYVI 2037
Query: 1800 QTAANIH-KVDAP-LEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDP 1857
H V P LE +K +C L ++ ++ +RK LLK +REFA AEF+DP
Sbjct: 2038 PVLPGSHLNVKNPLLELVKSLCHVMLLSKSTILEIRTLRKELLKIFELREFAKVAEFKDP 2097
Query: 1858 CPSFILPNVICSYCNDCRDLDLCRDMALLAQDWHCAMPQCGQPYDREVMENALLQIVRQR 1917
S ++P+ +C YC D+D C+ A + C +C + +++ +++ L+Q +R
Sbjct: 2098 SLSLVVPDFLCEYCFFISDIDFCK--AAPESIFSCV--RCHKAFNQVLLQEHLIQKLRSD 2153
Query: 1918 ERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLL 1977
Y +QDL C RC++VK +++ C CAG++ K+ +F +A GF +L
Sbjct: 2154 IESYLIQDLRCSRCHKVKRDYMSAHCPCAGAWEGTLPRESIVQKLNVFKQVAKYYGFDIL 2213
Query: 1978 QECTS 1982
C +
Sbjct: 2214 LSCIA 2218
>sp|P0CN26|DPOE_CRYNJ DNA polymerase epsilon catalytic subunit A OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=POL2 PE=3 SV=1
Length = 2250
Score = 1315 bits (3403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/1441 (47%), Positives = 929/1441 (64%), Gaps = 108/1441 (7%)
Query: 7 DRQDGRRTKKQKLIRSAEEELEAKLGYDLF----SEGDKRLGWLLTFASSSLEDEDTRKV 62
+R+DG ++ +E++ K+G+ F +EG++++GWL+ + + +
Sbjct: 56 NREDGTAATEKFEEVKVYDEIDEKIGFWRFESVRAEGEEKVGWLVNMHQTLVPSDVHPGG 115
Query: 63 YSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKED 122
+ +D YF+ DG +FK + PYFY + E VE +L +RYE I IE +K D
Sbjct: 116 LAAVDYYFIQDDGGSFKVSIPYEPYFYLTCRGGTESIVEEWLLKRYEGIIIRIEREKKWD 175
Query: 123 LDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILT------ 176
L L NHL +LK+ F L +++DLL + N KF A +AY +++
Sbjct: 176 LSLPNHLLSAPPVFLKLFFHNTADLQTIRRDLLPLARSNSEKFTAVDAYADVVSAEAAAN 235
Query: 177 --GKREQRP------------QDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISS 222
G E R ++ +CI+++RE+D+ YH+R AID ++R G WY V+ +
Sbjct: 236 GHGDDENRAWGAEDDTKKKKDKEPSECIIEVREHDLAYHLRVAIDLNIRVGLWYTVTSRT 295
Query: 223 TGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINREC 282
LE+ D ++RA+ V A+DIETTK PLKFPD D IMMISYM+DG GYLI NRE
Sbjct: 296 GVITLERIPDRVKRADPVVMAYDIETTKQPLKFPDQQTDQIMMISYMIDGMGYLITNREI 355
Query: 283 VGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFL 342
VGEDI+D EYTPK E+ G F V N +E ++R WF H+++ KP + TYNGD FD+PF+
Sbjct: 356 VGEDIDDFEYTPKDEYPGEFTVFNEPDEPAVIRRWFEHIRDSKPTVIATYNGDSFDFPFV 415
Query: 343 ETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAK 402
+ RA HG M EE+GF+ D + E +++ H+DCF WVKRDSYLPQGSQGLKAVT AK
Sbjct: 416 DARAKIHGISMYEEIGFKPDIEE-EYKSRSTMHMDCFRWVKRDSYLPQGSQGLKAVTTAK 474
Query: 403 LGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDE 462
LGY+P+E++PE M +A E+PQ++A YSVSDAVATYYLYM YVHPFIFSL IIP+SPDE
Sbjct: 475 LGYNPIELDPELMTPYAIEQPQILAQYSVSDAVATYYLYMKYVHPFIFSLCNIIPLSPDE 534
Query: 463 VLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVF 522
VLRKG+GTLCE LLMV+AY A++I PN+H+ Y HLL SETY+GGHVE LE+GVF
Sbjct: 535 VLRKGTGTLCETLLMVEAYDAHIIMPNRHEDPHGVTYEGHLLASETYVGGHVEALEAGVF 594
Query: 523 RSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQE 582
RSD+PT FK+ PSA ++L+++LD L++++ EG++ LE V NYDEVK I L +++
Sbjct: 595 RSDIPTHFKIVPSAIQELIDDLDAALRFSLIEEGQVKLEDVENYDEVKQQIQTALETMRD 654
Query: 583 EPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWR 642
EP R + PLIYHLDVAAMYPNI+L+NRLQP S+ + C CD+NRP K C R++EW WR
Sbjct: 655 EPNRFDNPLIYHLDVAAMYPNIMLSNRLQPDSVKEEADCAVCDYNRPDKKCDRRMEWAWR 714
Query: 643 GEIFMGKRSDYYHLKKQIESE-FVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYK 701
GE F KR + ++ +E E F + F+DL EQ + L RL Y +K YK
Sbjct: 715 GEYFPAKRDEVNMVRYALEQETFPPKRPYDPKRRFVDLTPTEQSALLHKRLGDYSRKVYK 774
Query: 702 RVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSI-K 760
+ D + + IC RENSFY+DTVR+FRDRRYEYKGL+K WK L +A G ++
Sbjct: 775 KTHDTKIVT-KTTIICQRENSFYIDTVRAFRDRRYEYKGLHKTWKKNLDKAFEEGGAVAT 833
Query: 761 IQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLI 820
+ EA+ M+VLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAG+ TGA IIQ AR L+
Sbjct: 834 VDEAKKMIVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGITCLTGATIIQMARQLV 893
Query: 821 EKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQ 880
E+IG+PLELDTDGIWC+LPG FPE+F FK K+ KK ISYPC MLN V TNDQY
Sbjct: 894 EQIGRPLELDTDGIWCMLPGVFPEDFNFKLKN-GKKFGISYPCTMLNHLVHAQFTNDQYH 952
Query: 881 TLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGF 940
LV+ S TY E SI FE+DGPYKAMILP+SKEE L+KKRYAVFN DG+LAELKGF
Sbjct: 953 ELVNNDSGTYNVKKENSIFFELDGPYKAMILPSSKEEDKLLKKRYAVFNPDGSLAELKGF 1012
Query: 941 EIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELID 1000
E+KRRGEL++IK+FQ+++FDKFL G T EECY+AVA VA++WLD+L ++ + D EL+D
Sbjct: 1013 EVKRRGELQMIKIFQSQIFDKFLLGKTTEECYAAVATVADQWLDILQSKASSLHDDELVD 1072
Query: 1001 YISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSE 1060
I+E+ +MSK+LA+Y QKS +++TARRL++FLG+ MVKDKGL C++I++ +P G PV+E
Sbjct: 1073 LIAENRSMSKTLAEYAGQKSTSISTARRLAEFLGEQMVKDKGLSCRFIISAKPNGAPVTE 1132
Query: 1061 RAVPVAIFETDAEIMKFYLRKWCKTSS--DVGIRSIVDWSYYKQRLSSAIQKIITIPAAM 1118
RAVPVAIF + + + YLRKW K +S D +R+I+DW YY +RL S IQK+ITIPAA+
Sbjct: 1133 RAVPVAIFTAEEPVKRHYLRKWLKDNSLTDFDLRTILDWDYYTERLGSVIQKLITIPAAL 1192
Query: 1119 QKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENV 1178
QKV NPVPR+ HPDWLYK++ KEDKF+Q K+ D+F+ LK ++
Sbjct: 1193 QKVPNPVPRIRHPDWLYKRIATKEDKFQQHKITDMFTKLK------------------DM 1234
Query: 1179 EDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQN 1238
EDL D KK GP+ V V ++ + E ++ +
Sbjct: 1235 EDLGDGQKKV-----GPKLAV-----------------VRRRNRKEQEKESEVEEVPPEP 1272
Query: 1239 AIDTENIDRIVDYKGWLELKKRKWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKE 1298
D RI+ K+KW+ +++++K + ++ + +G S+
Sbjct: 1273 EYDYAGYIRIM---------KKKWR----KQRQEKARARKSGLRQDGTISSM-------- 1311
Query: 1299 AQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYL 1358
R Q ++M W +IQ+ +++ G F W+ ++G + + VPR FYL
Sbjct: 1312 ----------LRTQTSSMNSKQWDVIQIASTNRPGEFKLWLAIDGTFQSVRLKVPREFYL 1361
Query: 1359 NSK-DP-----IVEKFPGRRVNKTLPHGRRSFNLIEVMIDEDQFRKESKKLAALLADPEV 1412
N K DP +++ V +TLP G+ + +L ++ +DE F + + L+ +P V
Sbjct: 1362 NFKEDPEPQMLATDRYEAVEVVRTLPRGQPARHLYKLSVDEVLFMEGESHFSTLINNPNV 1421
Query: 1413 E 1413
+
Sbjct: 1422 D 1422
Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 165/569 (28%), Positives = 281/569 (49%), Gaps = 59/569 (10%)
Query: 1448 ILWISDDGVPDLGGTSEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALLKSNQV 1507
++W S PDLGG SEED ++++ P ++ G Y +E+++ L++NA+L+S V
Sbjct: 1677 LIWWSSTPRPDLGG-SEEDANSSEDLVSPHISNRGCYSSTVLEMEVSDLAINAVLQSALV 1735
Query: 1508 NEMEGGGL--FGFDQ------DMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTD-- 1557
NEMEG G FD + G N + D S+ F V+K +++ D
Sbjct: 1736 NEMEGSGTGSLAFDSASHNLDEYAKGAVNTSVMLGDAVLSTQ-TFGVLKSMLRAWYADKA 1794
Query: 1558 -AVTSGNVF--ADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGAT 1614
A G+ A+ ++ +RW+ S S + +P LHR LH +M+K F LLAEF++LG
Sbjct: 1795 RAHVKGDSLSPAEIVVDQFWRWISSSTSSMFEPALHRFLHGLMRKTFLQLLAEFKRLGTQ 1854
Query: 1615 IIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNY 1674
+++A+F +V + T K D +A A+ L+ A ++ELF + ++ FW+ L +MD N+
Sbjct: 1855 VVYADFGRVFLLTSKPDAGSAFAFAKYLVAAANSQELFRHLIIDVAQFWNYLAWMDVANF 1914
Query: 1675 GGI---PARADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAA 1731
GG+ P A + +I WNI +LP +Q F V+ F++ + + +
Sbjct: 1915 GGVKVSPETAASREPPAKRFEISMDWNIQSFLPGTLQPVFERNVASFIFSLYSAKRSSSD 1974
Query: 1732 SRASL---------QEGSSCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAI 1782
R L Q G+ T ++ + ++ IS T +LLS I
Sbjct: 1975 GREPLRVIHSLNIDQPGTEATSTMNPTKEKEKKAASKS-----ISQTLTRRLLS----DI 2025
Query: 1783 HHMKKMNNDQHNSPGVMQT-------AANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVM 1835
+K+ H P T A +++ LE IK + ++L +V ++
Sbjct: 2026 AAVKRQQAAVHLEPEEAYTLAFPDLPGARSKRINPTLELIKAITEVYSLASEHSIEVQIL 2085
Query: 1836 RKNLLKYVRVREFAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALLA-------- 1887
++NLL + V+EF+ +A F PC S +P VIC CN RD+DLCRD L
Sbjct: 2086 KRNLLDLIGVKEFSSDAAFNPPCESIEVPMVICKKCNAIRDVDLCRDPDRLPSVNPDSGE 2145
Query: 1888 ------QDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAE 1941
++W C +C YDR +E L+++V + Y +QD++C++C+Q K+ +LA
Sbjct: 2146 MLEPARKNWVCH--KCDSEYDRFQIEQPLIEMVTKTITNYQIQDVICLKCSQTKSDNLAA 2203
Query: 1942 QCACAGSFRCKEDASDFRSKMQIFLNIAN 1970
C C G FR + ++ ++K+++ ++ +
Sbjct: 2204 TCKCGGGFRTTSNRNELKTKLKMIKSVCD 2232
>sp|P0CN27|DPOE_CRYNB DNA polymerase epsilon catalytic subunit A OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=POL2 PE=3
SV=1
Length = 2250
Score = 1315 bits (3403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/1441 (47%), Positives = 929/1441 (64%), Gaps = 108/1441 (7%)
Query: 7 DRQDGRRTKKQKLIRSAEEELEAKLGYDLF----SEGDKRLGWLLTFASSSLEDEDTRKV 62
+R+DG ++ +E++ K+G+ F +EG++++GWL+ + + +
Sbjct: 56 NREDGTAATEKFEEVKVYDEIDEKIGFWRFESVRAEGEEKVGWLVNMHQTLVPSDVHPGG 115
Query: 63 YSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKED 122
+ +D YF+ DG +FK + PYFY + E VE +L +RYE I IE +K D
Sbjct: 116 LAAVDYYFIQDDGGSFKVSIPYEPYFYLTCRGGTESIVEEWLLKRYEGIIIRIEREKKWD 175
Query: 123 LDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILT------ 176
L L NHL +LK+ F L +++DLL + N KF A +AY +++
Sbjct: 176 LSLPNHLLSAPPVFLKLFFHNTADLQTIRRDLLPLARSNSEKFTAVDAYADVVSAEAAAN 235
Query: 177 --GKREQRP------------QDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISS 222
G E R ++ +CI+++RE+D+ YH+R AID ++R G WY V+ +
Sbjct: 236 GHGDDENRAWGAEDDTKKKKDKEPSECIIEVREHDLAYHLRVAIDLNIRVGLWYTVTSRT 295
Query: 223 TGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINREC 282
LE+ D ++RA+ V A+DIETTK PLKFPD D IMMISYM+DG GYLI NRE
Sbjct: 296 GVITLERIPDRVKRADPVVMAYDIETTKQPLKFPDQQTDQIMMISYMIDGMGYLITNREI 355
Query: 283 VGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFL 342
VGEDI+D EYTPK E+ G F V N +E ++R WF H+++ KP + TYNGD FD+PF+
Sbjct: 356 VGEDIDDFEYTPKDEYPGEFTVFNEPDEPAVIRRWFEHIRDSKPTVIATYNGDSFDFPFV 415
Query: 343 ETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAK 402
+ RA HG M EE+GF+ D + E +++ H+DCF WVKRDSYLPQGSQGLKAVT AK
Sbjct: 416 DARAKIHGISMYEEIGFKPDIEE-EYKSRSTMHMDCFRWVKRDSYLPQGSQGLKAVTTAK 474
Query: 403 LGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDE 462
LGY+P+E++PE M +A E+PQ++A YSVSDAVATYYLYM YVHPFIFSL IIP+SPDE
Sbjct: 475 LGYNPIELDPELMTPYAIEQPQILAQYSVSDAVATYYLYMKYVHPFIFSLCNIIPLSPDE 534
Query: 463 VLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVF 522
VLRKG+GTLCE LLMV+AY A++I PN+H+ Y HLL SETY+GGHVE LE+GVF
Sbjct: 535 VLRKGTGTLCETLLMVEAYDAHIIMPNRHEDPHGVTYEGHLLASETYVGGHVEALEAGVF 594
Query: 523 RSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQE 582
RSD+PT FK+ PSA ++L+++LD L++++ EG++ LE V NYDEVK I L +++
Sbjct: 595 RSDIPTHFKIVPSAIQELIDDLDAALRFSLIEEGQVKLEDVENYDEVKQQIQTALETMRD 654
Query: 583 EPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWR 642
EP R + PLIYHLDVAAMYPNI+L+NRLQP S+ + C CD+NRP K C R++EW WR
Sbjct: 655 EPNRFDNPLIYHLDVAAMYPNIMLSNRLQPDSVKEEADCAVCDYNRPDKKCDRRMEWAWR 714
Query: 643 GEIFMGKRSDYYHLKKQIESE-FVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYK 701
GE F KR + ++ +E E F + F+DL EQ + L RL Y +K YK
Sbjct: 715 GEYFPAKRDEVNMVRYALEQETFPPKRPYDPKRRFVDLTPTEQSALLHKRLGDYSRKVYK 774
Query: 702 RVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSI-K 760
+ D + + IC RENSFY+DTVR+FRDRRYEYKGL+K WK L +A G ++
Sbjct: 775 KTHDTKIVT-KTTIICQRENSFYIDTVRAFRDRRYEYKGLHKTWKKNLDKAFEEGGAVAT 833
Query: 761 IQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLI 820
+ EA+ M+VLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAG+ TGA IIQ AR L+
Sbjct: 834 VDEAKKMIVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGITCLTGATIIQMARQLV 893
Query: 821 EKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQ 880
E+IG+PLELDTDGIWC+LPG FPE+F FK K+ KK ISYPC MLN V TNDQY
Sbjct: 894 EQIGRPLELDTDGIWCMLPGVFPEDFNFKLKN-GKKFGISYPCTMLNHLVHAQFTNDQYH 952
Query: 881 TLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGF 940
LV+ S TY E SI FE+DGPYKAMILP+SKEE L+KKRYAVFN DG+LAELKGF
Sbjct: 953 ELVNNDSGTYNVKKENSIFFELDGPYKAMILPSSKEEDKLLKKRYAVFNPDGSLAELKGF 1012
Query: 941 EIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELID 1000
E+KRRGEL++IK+FQ+++FDKFL G T EECY+AVA VA++WLD+L ++ + D EL+D
Sbjct: 1013 EVKRRGELQMIKIFQSQIFDKFLLGKTTEECYAAVATVADQWLDILQSKASSLHDDELVD 1072
Query: 1001 YISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSE 1060
I+E+ +MSK+LA+Y QKS +++TARRL++FLG+ MVKDKGL C++I++ +P G PV+E
Sbjct: 1073 LIAENRSMSKTLAEYAGQKSTSISTARRLAEFLGEQMVKDKGLSCRFIISAKPNGAPVTE 1132
Query: 1061 RAVPVAIFETDAEIMKFYLRKWCKTSS--DVGIRSIVDWSYYKQRLSSAIQKIITIPAAM 1118
RAVPVAIF + + + YLRKW K +S D +R+I+DW YY +RL S IQK+ITIPAA+
Sbjct: 1133 RAVPVAIFTAEEPVKRHYLRKWLKDNSLTDFDLRTILDWDYYTERLGSVIQKLITIPAAL 1192
Query: 1119 QKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENV 1178
QKV NPVPR+ HPDWLYK++ KEDKF+Q K+ D+F+ LK ++
Sbjct: 1193 QKVPNPVPRIRHPDWLYKRIATKEDKFQQHKITDMFTKLK------------------DM 1234
Query: 1179 EDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQN 1238
EDL D KK GP+ V V ++ + E ++ +
Sbjct: 1235 EDLGDGQKKV-----GPKLAV-----------------VRRRNRKEQEKESEVEEVPPEP 1272
Query: 1239 AIDTENIDRIVDYKGWLELKKRKWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKE 1298
D RI+ K+KW+ +++++K + ++ + +G S+
Sbjct: 1273 EYDYAGYIRIM---------KKKWR----KQRQEKARARKSGLRQDGTISSM-------- 1311
Query: 1299 AQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYL 1358
R Q ++M W +IQ+ +++ G F W+ ++G + + VPR FYL
Sbjct: 1312 ----------LRTQTSSMNSKQWDVIQIASTNRPGEFKLWLAIDGTFQSVRLKVPREFYL 1361
Query: 1359 NSK-DP-----IVEKFPGRRVNKTLPHGRRSFNLIEVMIDEDQFRKESKKLAALLADPEV 1412
N K DP +++ V +TLP G+ + +L ++ +DE F + + L+ +P V
Sbjct: 1362 NFKEDPEPQMLATDRYEAVEVVRTLPRGQPARHLYKLSVDEVLFMEGESHFSTLINNPNV 1421
Query: 1413 E 1413
+
Sbjct: 1422 D 1422
Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 165/569 (28%), Positives = 281/569 (49%), Gaps = 59/569 (10%)
Query: 1448 ILWISDDGVPDLGGTSEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALLKSNQV 1507
++W S PDLGG SEED ++++ P ++ G Y +E+++ L++NA+L+S V
Sbjct: 1677 LIWWSSTPRPDLGG-SEEDANSSEDLVSPHISNRGCYSSTVLEMEVSDLAINAVLQSALV 1735
Query: 1508 NEMEGGGL--FGFDQ------DMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTD-- 1557
NEMEG G FD + G N + D S+ F V+K +++ D
Sbjct: 1736 NEMEGSGTGSLAFDSASHNLDEYAKGAVNTSVMLGDAVLSTQ-TFGVLKSMLRAWYADKA 1794
Query: 1558 -AVTSGNVF--ADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGAT 1614
A G+ A+ ++ +RW+ S S + +P LHR LH +M+K F LLAEF++LG
Sbjct: 1795 RAHVKGDSLSPAEIVVDQFWRWISSSTSSMFEPALHRFLHGLMRKTFLQLLAEFKRLGTQ 1854
Query: 1615 IIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNY 1674
+++A+F +V + T K D +A A+ L+ A ++ELF + ++ FW+ L +MD N+
Sbjct: 1855 VVYADFGRVFLLTSKPDAGSAFAFAKYLVAAANSQELFRHLIIDVAQFWNYLAWMDVANF 1914
Query: 1675 GGI---PARADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAA 1731
GG+ P A + +I WNI +LP +Q F V+ F++ + + +
Sbjct: 1915 GGVKVSPETAASREPPAKRFEISMDWNIQSFLPGTLQPVFERNVASFIFSLYSAKRSSSD 1974
Query: 1732 SRASL---------QEGSSCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAI 1782
R L Q G+ T ++ + ++ IS T +LLS I
Sbjct: 1975 GREPLRVIHSLNIDQPGTEATSTMNPTKEKEKKAASKS-----ISQTLTRRLLS----DI 2025
Query: 1783 HHMKKMNNDQHNSPGVMQT-------AANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVM 1835
+K+ H P T A +++ LE IK + ++L +V ++
Sbjct: 2026 AAVKRQQAAVHLEPEEAYTLAFPDLPGARSKRINPTLELIKAITEVYSLASEHSIEVQIL 2085
Query: 1836 RKNLLKYVRVREFAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALLA-------- 1887
++NLL + V+EF+ +A F PC S +P VIC CN RD+DLCRD L
Sbjct: 2086 KRNLLDLIGVKEFSSDAAFNPPCESIEVPMVICKKCNAIRDVDLCRDPDRLPSVNPDSGE 2145
Query: 1888 ------QDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAE 1941
++W C +C YDR +E L+++V + Y +QD++C++C+Q K+ +LA
Sbjct: 2146 MLEPARKNWVCH--KCDSEYDRFQIEQPLIEMVTKTITNYQIQDVICLKCSQTKSDNLAA 2203
Query: 1942 QCACAGSFRCKEDASDFRSKMQIFLNIAN 1970
C C G FR + ++ ++K+++ ++ +
Sbjct: 2204 TCKCGGGFRTTSNRNELKTKLKMIKSVCD 2232
>sp|Q4PFV5|DPOE_USTMA DNA polymerase epsilon catalytic subunit A OS=Ustilago maydis (strain
521 / FGSC 9021) GN=POL2 PE=3 SV=1
Length = 2305
Score = 1315 bits (3402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/1171 (54%), Positives = 829/1171 (70%), Gaps = 42/1171 (3%)
Query: 25 EELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKYKF 84
+E++ KLG+ +G R WL+ + L D D S +D YF+ D S FK+ +
Sbjct: 68 DEIDEKLGFHRLEQGQTRQAWLVNMHPTLLRDPDHPTGKSGVDFYFIEDDASMFKATVLY 127
Query: 85 RPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTV 144
+PYF + E VE +LRRRYE + I+ KEDL L NHL G + YL+++F V
Sbjct: 128 QPYFLVGCRPGTESSVEEWLRRRYEGLVQSIQRDRKEDLKLPNHLLGNQRLYLRLTFLNV 187
Query: 145 QQLMDVKKDLLHVVERNQAKFDAAEAYESIL----------------------------- 175
Q L+ V+K+LL + + Q K A + Y +L
Sbjct: 188 QDLLSVRKELLPIAKAAQKKLSAVDTYADVLSAASAAASASLGIQLDSDGHNAALDPDDG 247
Query: 176 -TGKREQRPQDFLD---CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRV 231
TG R++ LD C+VD+REYD+PY++R AID DVR G WYDVS L
Sbjct: 248 WTGARKRAAASALDPAECLVDIREYDIPYYLRVAIDQDVRVGLWYDVSFEDGIVSLNMVK 307
Query: 232 DLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLE 291
D ++RA+ V AFDIETTK PLKFPDA+ D +MMISYM+DGQG+LI NRE V EDIED E
Sbjct: 308 DRVKRADPVVMAFDIETTKQPLKFPDAETDAVMMISYMIDGQGFLITNREIVSEDIEDFE 367
Query: 292 YTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGF 351
YTP+ E+EG F + N +E+ +L+ +F+H +E +P + TYNGD FD+PF++ RA HG
Sbjct: 368 YTPRDEYEGPFIIFNEPDELGVLQRFFSHFREARPTVVATYNGDLFDFPFIDARARAHGL 427
Query: 352 KMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVN 411
M E+GF D + E +++ HLDCF WV+RDSYLPQGSQGLKAVT AKLGYDP+E++
Sbjct: 428 NMMSEIGFAKDSDN-EYKSRATAHLDCFRWVQRDSYLPQGSQGLKAVTVAKLGYDPMELD 486
Query: 412 PEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTL 471
PE M +A E+PQ +A YSVSDAVATYYLYM YVHPFIFSL IIP++PDEVLRKGSGTL
Sbjct: 487 PELMTPYAIEQPQTLAQYSVSDAVATYYLYMKYVHPFIFSLCNIIPLNPDEVLRKGSGTL 546
Query: 472 CEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFK 531
CE LLMVQA+K N+I PN+H+ Y+ HLLESETY+GGHVE LE+GVFRSD+ T F+
Sbjct: 547 CETLLMVQAFKGNIIMPNRHEDPVGNTYKGHLLESETYVGGHVEALEAGVFRSDIETDFR 606
Query: 532 LDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPL 591
+DP+A +QL+++LD LQ++I+ EGK+DL+ + NYDEVK I L ++++P+R++CPL
Sbjct: 607 VDPAAIQQLIDDLDAALQFSIREEGKLDLDDIENYDEVKAEIRTMLEVMRDQPVRKDCPL 666
Query: 592 IYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRS 651
IYHLDVAAMYPNI+L+ RLQP S+V++ +C CD+NRPG C ++++W WRGE F KR
Sbjct: 667 IYHLDVAAMYPNIMLSYRLQPDSMVSEAMCATCDYNRPGMKCDKRMDWAWRGEYFPAKRD 726
Query: 652 DYYHLKKQIESEFVDGTNGHLS-KSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTE 710
+ ++ + +E HL+ +++ DL E+ + L RL Y +K Y++ + T
Sbjct: 727 EVNMIRNALSNETFPPKAAHLARRTYDDLDPNERTALLHKRLGDYSRKVYRKTHESK-TV 785
Query: 711 LREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVL 770
+REA IC REN FY++TVR FRDRRYEYKGL+K WK L +A + ++I EA+ M+VL
Sbjct: 786 IREAVICQRENPFYINTVRDFRDRRYEYKGLHKTWKKNLDKADSLNDTI---EAKKMIVL 842
Query: 771 YDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELD 830
YDSLQLAHKCILNSFYGYVMRKGARWYSMEMAG+ TGA IIQ A+ L+++IG+PLELD
Sbjct: 843 YDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGITCLTGASIIQMAKELVDRIGRPLELD 902
Query: 831 TDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTY 890
TDGIWC+LPG FPENF FK K KK ISYPC MLN V TN QY LVD + Y
Sbjct: 903 TDGIWCMLPGVFPENFNFKVKG-GKKFGISYPCTMLNHLVHEKFTNHQYHELVDKQTGKY 961
Query: 891 ETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKL 950
E SE SI FE+DGPYKAMILP+SKEE L+KKRYAVFN DG+LAELKGFE+KRRGEL+L
Sbjct: 962 EVRSENSIFFELDGPYKAMILPSSKEEDKLLKKRYAVFNTDGSLAELKGFEVKRRGELQL 1021
Query: 951 IKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSK 1010
IK FQ ++F+KFL G+T+ ECY+AVA VAN+WLD+L ++G + D ELID I+E+ +MSK
Sbjct: 1022 IKDFQKQIFEKFLLGTTLNECYAAVAKVANQWLDVLYSKGSTLHDEELIDLIAENKSMSK 1081
Query: 1011 SLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFET 1070
+L +YG KS A+TTA+RL++FLG M+KDKGL C++I++ +P G PV+ERAVPVA+F
Sbjct: 1082 TLQEYGSLKSTAITTAKRLAEFLGAQMIKDKGLACKFIISAKPFGAPVTERAVPVALFNA 1141
Query: 1071 DAEIMKFYLRKWCKTSS--DVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRV 1128
+ + +YL+K+ + +S D IR+I+DW+YY +R IQK+ITIPAAMQKVSNPVPRV
Sbjct: 1142 EPSVKHYYLKKFLRDNSITDFDIRNILDWNYYIERFGGVIQKLITIPAAMQKVSNPVPRV 1201
Query: 1129 VHPDWLYKKVREKEDKFRQRKLVDIFSSLKK 1159
HPDWL+K+V +EDKF+QRKL D+F K
Sbjct: 1202 RHPDWLHKRVAAREDKFKQRKLTDVFRPAAK 1232
Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 193/678 (28%), Positives = 313/678 (46%), Gaps = 112/678 (16%)
Query: 1402 KLAALLADPEVEVLGWQQNAAKIGMQRCAASSQWFNERISLARYAH-------------- 1447
K+AA + E+ LGWQ +A+ +Q +S W I LA +
Sbjct: 1623 KIAAAALEDELPALGWQLYSARRMLQCYLRASNWIRGWIDLASHFDLPLCNMEKDFTIFG 1682
Query: 1448 --------------ILWISDDGVPDLGGTSEEDECFA--DEVHQPVLTYPGAYRKVSVEL 1491
+LW S PDLGG ++ + DE +++ GAY V +E+
Sbjct: 1683 ADIDFARRLVKQDMVLWWSPHPRPDLGGREQDIHAQSRWDEQESLEISHAGAYSTVCLEV 1742
Query: 1492 KIHHLSVNALLKSNQVNEMEGG-GLFGFD------QDMNSGPYNNELCGFDETTSSAPAF 1544
+ L+V+++L+S VNEMEG F F+ + + G D +SA F
Sbjct: 1743 GLVDLAVDSVLQSGSVNEMEGSTSGFAFEGASHNLDEYSRGTVETATILGDSVLTSA-VF 1801
Query: 1545 RVVKQLIQRCLTDAVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAML 1604
VK +++ T + + +A + + +RW S S L +P L R L +M+K L
Sbjct: 1802 AAVKGMVKAWYTTKRRNRSPYAALLSDNFWRWASSDGSALFEPALQRFLFGLMKKTLLQL 1861
Query: 1605 LAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWH 1664
LAEF++LGA+I++A+F+++ + T K + A AY LL A+ +RELF+ ++L+ +H+W
Sbjct: 1862 LAEFKRLGASIVYASFNRLFLLTSKPTAANAMAYSRYLLTAVTSRELFKHVQLDIIHYWE 1921
Query: 1665 SLLFMDQYNYGGIPARADESL---DDDSQ----------VDIVSSWNIAEYLPKEIQDHF 1711
LL+MD N+GG+ A D + D+ +Q ++ +WNI +LP +Q+ F
Sbjct: 1922 YLLWMDTANFGGVIADTDSLVAPTDEQAQEASAANQVATFNVEMNWNIQTFLPLAVQEKF 1981
Query: 1712 VLVVSEFMYIPWKHAQKLAAS--------RASLQEGSSCTP------------------S 1745
+ V F+Y +++ ++ A + RA ++ + P
Sbjct: 1982 SVAVGSFIYSLYEYKRRAALAGEHERTPLRAVVEPNTPADPVTLHGDGGQVNGDGGKDDR 2041
Query: 1746 ITVAAAENFESHIVQY------------VKGEISSYFTGKLLSIVRDAIHHMKKMNNDQH 1793
+A A F S ++ + +K + + +I RD M +H
Sbjct: 2042 TALAPAAKFTSDLINHTMTRKLLKHLSELKSSMQTSSDEINAAIARDEDEEYIDMLTTEH 2101
Query: 1794 NS-------PGVMQTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVR 1846
PG T +N LEFIK A +L ++ +V ++++NLL ++VR
Sbjct: 2102 RRMWSFPVLPGSWLTPSN-----PLLEFIKTTNAVLSLAKDHAIEVSILKRNLLDMIKVR 2156
Query: 1847 EFAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALL---------AQDWHCAMPQC 1897
EF+PEAEFR+PC F LP VIC++CND R LDLCRD L+ A W CA +C
Sbjct: 2157 EFSPEAEFRNPCEPFKLPLVICTFCNDDRTLDLCRDADLMPSAASNGGGAPKWKCA--KC 2214
Query: 1898 GQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASD 1957
PY+ +E L+ +HLQDL C +C +K +L C C+GSF +
Sbjct: 2215 QFPYNIAALEMRLVNTANAYLESFHLQDLRCNKCGALKQTNLQPHCECSGSFGLMVTRKE 2274
Query: 1958 FRSKMQIFLNIANRQGFQ 1975
+++ IA G +
Sbjct: 2275 TLKRLKSLKTIAEFHGLE 2292
>sp|Q54RD4|DPOE1_DICDI DNA polymerase epsilon catalytic subunit A OS=Dictyostelium
discoideum GN=pole PE=3 SV=1
Length = 2380
Score = 1313 bits (3399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 680/1427 (47%), Positives = 943/1427 (66%), Gaps = 79/1427 (5%)
Query: 44 GWLLTFASSSLEDE-DTRKVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEA 102
GWLL S +D D K + ++L+F+ D ++F+ + PYFY KE + +VE+
Sbjct: 31 GWLLNMQPGSSKDGLDIEK--ASLELFFIQDDATSFRVWIPYNPYFYIYVKEGHQSEVES 88
Query: 103 YLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQ 162
YL+ YE IA I+I++KEDLDL+NHLSGL + YLKI F V L+ V+ DL +++RN+
Sbjct: 89 YLKSTYEKDIAGIDIMDKEDLDLENHLSGLKRKYLKIRFHNVSTLLSVRNDLFPIIKRNK 148
Query: 163 AKFDAA-----EAYESILTGKREQRPQDF------------------------------- 186
K + + E+ IL + +
Sbjct: 149 QKSNTSEAYEDESLNKILNSYYNKGNNNNNNHQNYNNNNNQNNNNFNKELNKDDNNNNNS 208
Query: 187 ------LDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVH 240
+ I+D+REYDVPY++R AID ++R G WY V + + + + R +
Sbjct: 209 KLNKQATEYILDIREYDVPYYVRAAIDLNIRVGLWYTVIKNGRLTTVNELTTRVDRPDPK 268
Query: 241 VCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEG 300
V A+DIETTKLPLKFPD+ D IMMISYMLD QGYLI+NRE V EDI+D EYTPKPE+ G
Sbjct: 269 VLAYDIETTKLPLKFPDSSIDSIMMISYMLDKQGYLIVNREIVSEDIKDFEYTPKPEYYG 328
Query: 301 YFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQ 360
F V N +E +L +F+ ++ KP I+V+YNGD FDWPF+E+RA +HG M ++GF+
Sbjct: 329 PFTVFNEPDEKSVLERFFSEIKREKPHIFVSYNGDMFDWPFVESRAEYHGLSMFHQIGFR 388
Query: 361 CDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAK 420
D GE R+K H+D F WVKRDSYLP GS GLKAVT+ KL YDPLE++PE M++ A+
Sbjct: 389 ND--NGEYRSKINPHMDAFCWVKRDSYLPHGSHGLKAVTREKLRYDPLELDPELMLKSAQ 446
Query: 421 EKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQA 480
E P+ +A+YSVSDAVATYYLYM YVHPFIFSL TIIPM+PD+VLRKGSGTLCE LLM QA
Sbjct: 447 EDPETLANYSVSDAVATYYLYMNYVHPFIFSLCTIIPMNPDDVLRKGSGTLCEALLMTQA 506
Query: 481 YKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQL 540
+KA+VI PNKH+ D Y+ HLLESETY+GGHVECLESGVFRSD+PT+F LDP++ E+
Sbjct: 507 FKADVIFPNKHKDDINSMYKGHLLESETYVGGHVECLESGVFRSDIPTNFSLDPASIEKH 566
Query: 541 LNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAM 600
+ N+D+ L++A+K EG + L++VSNY EVK +++K L+E P ++ PLIYHLDV+AM
Sbjct: 567 MGNIDQVLKFALK-EGGIPLDTVSNYQEVKEDVLKKFTLLKENPKQQSHPLIYHLDVSAM 625
Query: 601 YPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQI 660
YPNIILTN+LQP ++V DEVC C +N+P C R L+W WRG+ +S+Y + +Q+
Sbjct: 626 YPNIILTNKLQPTAVVNDEVCATCVYNKPESQCQRTLDWQWRGDYSPSNQSEYRLILQQL 685
Query: 661 ESE-FVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMR 719
ESE F DG KSFL L + ++ L+ RLK+Y +K Y++ + E+R ICMR
Sbjct: 686 ESEKFGDGDE---RKSFLSLSEEKRNELLRKRLKEYSRKVYRKT-HQITQEIRSDTICMR 741
Query: 720 ENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEA-KASG--NSIKIQEAQDMVVLYDSLQL 776
ENSFYVDTVR FRDRRY +K ++ WK K +A + SG NS+ + AQ MVVLY+SLQL
Sbjct: 742 ENSFYVDTVRLFRDRRYVFKNHHRDWKIKYDQAMQESGGTNSVAVVAAQGMVVLYESLQL 801
Query: 777 AHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWC 836
AHKCILNSFYGYVMRKGARWYSM+MAG+VT+TG+ II+ AR ++E++G+PLE+DTDGIWC
Sbjct: 802 AHKCILNSFYGYVMRKGARWYSMQMAGIVTHTGSNIIKEAREVVEQMGRPLEIDTDGIWC 861
Query: 837 VLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSEC 896
+LP FPEN+T K+ KK+T SY C MLN VA++ TN QYQ + + TY EC
Sbjct: 862 ILPSHFPENYTLKSASTGKKVTFSYICEMLNEKVAKSFTNHQYQDY-NAETNTYTIRDEC 920
Query: 897 SIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQA 956
SI FE DGPY+ M++P SKE+ + +KKRYAVFN +G + ELKGFEIKRRGELKLIK+FQ+
Sbjct: 921 SILFECDGPYRCMLIPTSKEKDVKLKKRYAVFNREGRICELKGFEIKRRGELKLIKLFQS 980
Query: 957 ELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYG 1016
E+F +FL G ++E CY +V AVANRWLD+LD+ ++ + +LI+ I+ESS MS+ L +YG
Sbjct: 981 EVFKEFLGGDSLEGCYQSVGAVANRWLDILDSHAENYEEKDLIELITESSNMSRKLEEYG 1040
Query: 1017 EQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMK 1076
QKS A++TA++L++FLGD M+KDKGL CQYI++ +P G+P++ERA+PVAIF+ D E
Sbjct: 1041 TQKSSAISTAKKLAEFLGDDMIKDKGLSCQYIISNKPAGSPITERALPVAIFDADFETRC 1100
Query: 1077 FYLRKWCKT-SSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLY 1135
YLR+W K+ S D+ IR ++DW YY+QRLS IQKIITIPAA+Q V+NPVPRV+HPDW+
Sbjct: 1101 HYLRRWTKSPSGDLDIRELIDWDYYRQRLSGVIQKIITIPAALQNVTNPVPRVIHPDWIL 1160
Query: 1136 KKVREKEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMD------ENVEDLEDFPKKRR 1189
K++R ED +Q + F + +D N N N D + +D+E+ R
Sbjct: 1161 KEIRRNEDGRQQTSITSFFEKTEDNDQDNDNDNDNDNDNDNDNSKPQQTDDIENMFSSRF 1220
Query: 1190 NSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIV 1249
+ P V F+ + + + ++ + + +E +++Q T +ID+
Sbjct: 1221 KDLPAFNPKVTKFKRSKQSSSDVSSLLIKKSKSSIE--TFTNEQEKQIMETKTPSIDK-- 1276
Query: 1250 DYKGWLELKKRKWK-DNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSY 1308
D++GWL + K+KWK L ++++Q+LG + +S I K R + S+
Sbjct: 1277 DFQGWLSISKKKWKIQRLLKKRRQRLGG--------SLFDSDSFRIGSKLTNRESSSSSF 1328
Query: 1309 FRRQETAMTRCHWQIIQLVP--SSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVE 1366
F+ Q + + +W II + P + G++ W ++E ++ I + + R+FYLNS D
Sbjct: 1329 FKSQSDIIKKGYWNIISIEPIYGGEPGIYQMWSLIEDQLIPIKVDIGRVFYLNSIDTDPY 1388
Query: 1367 KFPGRRVNKTLPHGRRSFNLIEVMIDEDQFRKESKKLAALLADPEVE 1413
+ + N P G++ FN+ V + E QF ++SK+L L +P +E
Sbjct: 1389 EDAQKNTNVIPPRGKQRFNVFSVTMSESQFLEQSKELNTLFTNPMIE 1435
Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 180/359 (50%), Gaps = 79/359 (22%)
Query: 1441 SLARYAHILWISDDGVPDLGGTSEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNA 1500
SL H+LW+SD PDLGG+ E+D F +E++ + Y +V EL I +L+ N
Sbjct: 1676 SLVEQKHLLWMSDSNFPDLGGSEEDDAKFYEELNNVEINNSDCYNQVCFELDIENLATNT 1735
Query: 1501 LLKSNQVNEMEG--GGLFGFDQDM-------------------NSGPYNNELCGFD---- 1535
+L+S + E+EG G G + ++ N N+ FD
Sbjct: 1736 ILESIHLAEIEGILGNELGDESNVAMFDDIKNTSNNSNTKNGANQNTTNDTTSSFDKLSI 1795
Query: 1536 ----------ETTSSAPAFRVVKQLIQRCLTDAVTSGNV--------FADAILQHLYRWL 1577
+ + F +++ L+ + D V+ N +++ +L H YRW+
Sbjct: 1796 TNKFRSAINHQISGCEKEFNILRNLVSKWKLDLVSGSNSKRNEISSRYSNYLLLHFYRWI 1855
Query: 1578 CSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKA 1637
S +SKL+DP+L+R LH++M+KVF L+ EF+KLG+ I++ANF+K+II + K + A++
Sbjct: 1856 SSTNSKLYDPILYRTLHQLMKKVFIQLIFEFKKLGSKIVYANFNKIIICSQKDSIEDARS 1915
Query: 1638 YCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGI-------------------- 1677
YC+ +L ++ +ELF WI + +++H+LL+++ NY GI
Sbjct: 1916 YCNYILAVIKKKELFSWINFKQTNYYHNLLWLNNSNYSGILYFNPLINKNQQQQQQQQDN 1975
Query: 1678 -----PARADESLDD-----------DSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMY 1720
E+ ++ I+++WNIAE+LP +IQ F++++S+++Y
Sbjct: 1976 ADDDDDDDVSENEEEQQQNKNKKLKKIKNGKIITNWNIAEFLPPQIQTSFIIIISDYIY 2034
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 35/206 (16%)
Query: 1809 DAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFILPNVIC 1868
+ PLEFIK VC ++D+++ V +R L+ ++VREF+ EA+F+DPC SF LP+VIC
Sbjct: 2166 NPPLEFIKFVCHVLSIDKSISSRVSRLRMKLMTSMKVREFSDEAKFKDPCVSFTLPDVIC 2225
Query: 1869 SYCNDCRDLDLCRDMALLA-----------------------------QDWHCAMP---- 1895
S C+ CRD+DL R+ + D +P
Sbjct: 2226 SSCHSCRDIDLLRNTNTTSISSRLSSQQKSNNNDSDDSDDDNEENEGDDDNIIRVPELSC 2285
Query: 1896 -QCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCA-CAGSFRCKE 1953
QC Y + +E+ L++I+++R Y LQDL C +CN VK+ +L + C C+G + C +
Sbjct: 2286 IQCKGHYSKNTIESQLVEIIQRRSLSYQLQDLRCSKCNDVKSDNLGDICPQCSGQWECTQ 2345
Query: 1954 DASDFRSKMQIFLNIANRQGFQLLQE 1979
+ F + IF +IA F+ L E
Sbjct: 2346 SNNLFSKDLIIFKSIAEYHNFEWLGE 2371
>sp|Q6FNY7|DPOE_CANGA DNA polymerase epsilon catalytic subunit A OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=POL2 PE=3 SV=1
Length = 2217
Score = 1313 bits (3397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/1461 (47%), Positives = 947/1461 (64%), Gaps = 116/1461 (7%)
Query: 10 DGRRTKKQKLIRSAE-EELEAKLGY--------------DLFSEGDKRLGWLLTFASSSL 54
+G Q+L+++A+ ++++A +G+ D + R GWL+ + +
Sbjct: 18 NGYAVTAQQLLQAAKVDDIDAMMGFERYVPPQYNGRVDPDRLDQVPGRTGWLVNMHPTLI 77
Query: 55 EDE----------DTRKVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEM-DVEAY 103
+E + + +D YF+ ++G +FKS + PYF+ + + DVE +
Sbjct: 78 SEEIASGGGSDYNPSAAGIAGVDFYFLDEEGGSFKSSITYDPYFFVTVTDDARLNDVEEF 137
Query: 104 LRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQA 163
L++ E+ + DI L+KEDL L NHL GL KS +K+SF QL + +K L ++ N++
Sbjct: 138 LKKYLETCLKDISTLKKEDLKLDNHLLGLQKSLIKLSFVNSNQLFEARKLLRPILAENES 197
Query: 164 KFDAAEAYE--SILTGK-------------REQRPQDFLDCIVDLREYDVPYHIRFAIDN 208
++ +I G Q +D I D+REYDVPYH+R +ID
Sbjct: 198 NKQQRNVFKHSNISNGNGMLSSNVNRFASSSVQDKKDAKQYIEDIREYDVPYHVRVSIDK 257
Query: 209 DVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISY 268
D+R G+WY V+ G + D + A+ V AFDIETTK PLKFP+A D +MMISY
Sbjct: 258 DIRVGKWYKVT--HEGFFVWP--DKVAFADPVVLAFDIETTKAPLKFPEASVDQVMMISY 313
Query: 269 MLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGI 328
M+DG G+LI NRE + EDIED EYTPKPE +G+ + N +E+ +L+ +F H+++V+P +
Sbjct: 314 MIDGDGFLITNREIISEDIEDFEYTPKPELQGHVTIFNEVDELAVLQRFFEHIRDVRPTV 373
Query: 329 YVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYL 388
T+NGD+FDWPF+E RA+ G M EE+GF D ++GE ++ + H+DCF WVKRDSYL
Sbjct: 374 ISTFNGDFFDWPFIEKRASVRGLDMFEEIGFAPD-SEGEYKSSYCVHMDCFRWVKRDSYL 432
Query: 389 PQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPF 448
PQGSQGLKAVT+AKLGY+P+E++PE M +A E+PQ ++ YSVSDAVATYYLYM YVHPF
Sbjct: 433 PQGSQGLKAVTQAKLGYNPIELDPELMTPYAYERPQQLSEYSVSDAVATYYLYMKYVHPF 492
Query: 449 IFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESET 508
IFSL TIIP++PDEVLRKG+GTLCEMLLMVQAY+ N++ PNKH E+FY HLLESET
Sbjct: 493 IFSLCTIIPLNPDEVLRKGTGTLCEMLLMVQAYQGNILLPNKHTDPLERFYDGHLLESET 552
Query: 509 YIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDE 568
Y+GGHVE LE+GVFRSDL T FK+D SA ++L+ +L L++A++VE K +E V+N++E
Sbjct: 553 YVGGHVESLEAGVFRSDLATEFKIDTSAIDELIEDLPHALKFAVEVENKAKMEDVTNFEE 612
Query: 569 VKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNR 628
+K I E+LL L+E R E PLIYH+DVA+MYPNI+ TNRLQP SI T++ C +CDFNR
Sbjct: 613 IKEQIKEQLLELKENNKRHEKPLIYHVDVASMYPNIMTTNRLQPDSIKTEKDCASCDFNR 672
Query: 629 PGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSKSFL---DLPKMEQQ 685
PGK+C R+L+W WRGE + K +Y +K+ +++E N K +L +L EQ
Sbjct: 673 PGKSCARRLKWAWRGEFYPAKSDEYNMIKRALQNETFPNKNKFSKKPYLTFDELSYSEQV 732
Query: 686 SRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVW 745
+ +K RL +Y +K Y R+ + E REA +C REN FYV+TV+SFRDRRYE+KGL K W
Sbjct: 733 AHIKKRLTEYSKKVYHRIKVSEIVE-REAIVCQRENPFYVNTVKSFRDRRYEFKGLAKKW 791
Query: 746 KGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVV 805
KGK+S + K EA MVVLYDSLQLAHK ILNSFYGYVMRKG+RWYSMEMAG+
Sbjct: 792 KGKMSSIDRNDKHGK-DEANKMVVLYDSLQLAHKVILNSFYGYVMRKGSRWYSMEMAGIT 850
Query: 806 TYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVM 865
TGA IIQ AR L+E++G+PLELDTDGIWC+LP SFPENF K ++ KKL +SYPC M
Sbjct: 851 CLTGATIIQMARALVERVGRPLELDTDGIWCILPKSFPENFFLKLEN-GKKLFVSYPCSM 909
Query: 866 LNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRY 925
LN V + TN QYQ LVDPV YETHSE +I FEVDGPYKAMILP SKEEG IKKRY
Sbjct: 910 LNYRVHQKFTNHQYQELVDPVKHKYETHSENTIFFEVDGPYKAMILPTSKEEGKGIKKRY 969
Query: 926 AVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDL 985
AVFN+DG+LAELKGFE+KRRGEL+LIK FQ+++F FL G T+EECY++VAAV+NRWLD+
Sbjct: 970 AVFNEDGSLAELKGFELKRRGELQLIKNFQSDIFKVFLDGKTLEECYASVAAVSNRWLDI 1029
Query: 986 LDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRC 1045
LDN+G + D +L+ I E+ +MSKSL +Y QKS ++TTA+RL +FLG+ MVKDKGL+C
Sbjct: 1030 LDNKGSMLEDEDLVSLICENRSMSKSLKEYEGQKSTSITTAKRLGEFLGEDMVKDKGLQC 1089
Query: 1046 QYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSS--DVGIRSIVDWSYYKQR 1103
+YI++ +P G PV+ERA+PVAIF +D + + +LR+W S + IR+I+DW YY++R
Sbjct: 1090 KYIISSKPHGAPVTERAIPVAIFSSDINVKRSFLRRWTMDHSLDNFDIRTILDWGYYRER 1149
Query: 1104 LSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKDDFL 1163
L+S IQKIITIPAA+Q V NPVPRV HPDWL +++ KEDKF+Q KL + FL
Sbjct: 1150 LASVIQKIITIPAALQNVPNPVPRVEHPDWLKRRIAVKEDKFKQSKL---------ERFL 1200
Query: 1164 NKTCNAETNLMDENVEDL--EDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLR 1221
+K+ N +++E+L ED KR ++ +V + K + D ++
Sbjct: 1201 SKSSQEPQNRRIKDIEELFHEDDDIKR----------IKLAKVTSRNKNKRNRD----VQ 1246
Query: 1222 QQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKRKWKDNLDRRKKQKLGSLRASH 1281
+ E S V P++ +++ DY WL +K KWK + RR + + L
Sbjct: 1247 KNDEESLV---LPATMPSMEE-------DYVSWLSYQKIKWK--IQRRDRIRRTQLFGK- 1293
Query: 1282 QANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVV 1341
E R+ +GS R+Q W+++Q + ++G A+V++
Sbjct: 1294 --------------SGETNSRSVLGSMIRKQAEMFANGSWEVLQYRDNYEAGAVDAYVII 1339
Query: 1342 EGIMVRIPITVPRLFYLNSKD---PI--VEKFPGRRVNKTLPHGRRSFN-----LIEVMI 1391
G + + I VPR Y+N K P+ ++ R N LP+ R N L ++ +
Sbjct: 1340 NGKVQVLKIYVPRTLYINFKTDSVPLKKIKNCEVERSNAILPNDARINNDSASPLFKLTL 1399
Query: 1392 DEDQFRKESKKLAALLADPEV 1412
E + E + ++L D V
Sbjct: 1400 SEQVYLDELEDSGSVLNDESV 1420
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/542 (25%), Positives = 259/542 (47%), Gaps = 21/542 (3%)
Query: 1448 ILWISDDG-VPDLGGTS----EEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALL 1502
ILW ++ +PD GG + +++ P + P Y V +E+ I +L VN +L
Sbjct: 1683 ILWWNEQSPLPDHGGMENDFDQNTSWIMNDLDFPNINVPDVYDNVVLEVSIENLVVNTIL 1742
Query: 1503 KSNQVNEMEGGGLFGFDQ-DMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTDAVTS 1561
S +NE EG L + D++ P N G + + S A V+K L++ D
Sbjct: 1743 CSTLINEAEGSDLVDMNTVDVSDKPVGNN-QGIVQDSFSHDALAVLKSLLKEWW-DRALE 1800
Query: 1562 GNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFS 1621
N+ AD ++ L W+ S SKL D L +H + +K L+ EF +LG+ I+ A+ +
Sbjct: 1801 KNITADLLVNSLVSWVYSTDSKLFDGSLRYHIHNLTKKSLFQLMNEFNELGSFIVSADRN 1860
Query: 1622 KVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPARA 1681
+++I T K AY ++K++++ +F +++L +W L++MD+YN+ G+
Sbjct: 1861 RLLIKTNKISPETCYAYSHYMIKSIRSNPMFTYLDLNIERYWDLLIWMDKYNFSGLSCSQ 1920
Query: 1682 DESLDDDSQVDIVSSWNIAEYLPKEIQDHF---VLVVSEFMYIPWKHAQKLAASRASLQE 1738
E + S+W I YLP+ Q F +++ + M K + S Q
Sbjct: 1921 IEEREKQDYT-AYSNWQIKYYLPRIYQSEFEDWAMIILDSMV---KTKRAFLESSYGTQR 1976
Query: 1739 GSSCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMKKMNNDQHNSPGV 1798
+ +T + S + + K EI ++ + R+ + + + +
Sbjct: 1977 ATQIVTGLTPQSDTEDISPLSSFSK-EIGKPLLQRVNKLFRNQREFILDPGFSEDYAFPI 2035
Query: 1799 MQTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPC 1858
+ ++I D LEFIK + L ++ +V +RK +LK++ +REFA EAEF++P
Sbjct: 2036 L-PGSHIKMDDPLLEFIKSLFQILLLSKSTTLEVRQLRKEVLKFLEIREFAKEAEFQNPS 2094
Query: 1859 PSFILPNVICSYCNDCRDLDLCRDMALLAQDWHCAMPQCGQPYDREVMENALLQIVRQRE 1918
S ++ ++C YC+ DLDLCRD L + C P+C + + +++ ++Q +
Sbjct: 2095 DSLVINGILCEYCSYVSDLDLCRDG--LDGKFQC--PRCDKSINDSLLQEHMIQNLAIEY 2150
Query: 1919 RLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQ 1978
+ Y QDL C +C+ VK ++ C C+G++ C + ++I+ +A + L++
Sbjct: 2151 QTYITQDLRCEKCHTVKRDLMSTNCNCSGNWVCTTKPEKLSNIVKIYKQVAEFYNYSLVK 2210
Query: 1979 EC 1980
Sbjct: 2211 NA 2212
>sp|Q6CUS7|DPOE_KLULA DNA polymerase epsilon catalytic subunit A OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=POL2 PE=3 SV=1
Length = 2185
Score = 1302 bits (3370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/1481 (46%), Positives = 950/1481 (64%), Gaps = 122/1481 (8%)
Query: 17 QKLIRSAE-EELEAKLGYDLF----SEGDKRLGWL-----LTFASSSLEDED-----TRK 61
Q+L+ S + +E++ +G+ F + D ++GWL + LE+E T
Sbjct: 31 QQLLNSKKVDEIDEMMGFPRFIPSPALSDSKVGWLSNMHPTIISQEMLEEEGNLHSATVS 90
Query: 62 VYSCIDLYFVSQDGSTFKSKYKFRPYFYAA-TKEKMEMDVEAYLRRRYESQIADIEILEK 120
S +D YF+ ++G +FK+ + PYF+ + T E D+E YL++ E I +E++ K
Sbjct: 91 GISGVDFYFIDEEGGSFKTTVTYDPYFFVSCTDETRIHDIEEYLKKTLEQCIKKVELVLK 150
Query: 121 EDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKRE 180
+DL + NHL GL K +K+SF QL + ++ L +++ N+ + + Y TG +
Sbjct: 151 DDLAMNNHLVGLKKHLIKLSFSNSNQLFEARRILRPILKINEDENGKKDIYN---TGS-D 206
Query: 181 QRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVH 240
+D I D+REYDVPYH+R +ID ++R G+WY VS L EK + A+
Sbjct: 207 YSTRDVKTLIEDIREYDVPYHVRVSIDKNIRVGKWYAVSAQGLVELEEK----VTFADPV 262
Query: 241 VCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEG 300
V AFDIETTK PLKFPD+ D IMMISYM+DG+G+LI NRE + EDIED EYTPK E++G
Sbjct: 263 VLAFDIETTKAPLKFPDSAIDQIMMISYMIDGEGFLITNREIISEDIEDFEYTPKDEYKG 322
Query: 301 YFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQ 360
F + N +E+ LL+ +F H+++V+P + T+NGD+FDWPF+E RA HG M +E+GF
Sbjct: 323 QFAIFNEPDEMALLQRFFEHIRDVRPTVISTFNGDFFDWPFVENRAKFHGLNMFDEIGFA 382
Query: 361 CDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAK 420
D ++GE ++ + H+DCF WVKRDSYLPQGSQGLKAVT+AKLGY+PLE++PE M +A
Sbjct: 383 PD-SEGEYKSSYCTHMDCFRWVKRDSYLPQGSQGLKAVTQAKLGYNPLELDPELMTPYAY 441
Query: 421 EKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQA 480
EKPQ+++ YSVSDAVATYYLYM YVHPFIFSL TIIP++PDEVLRKG+GTLCEMLLMVQA
Sbjct: 442 EKPQILSEYSVSDAVATYYLYMKYVHPFIFSLCTIIPLNPDEVLRKGTGTLCEMLLMVQA 501
Query: 481 YKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQL 540
Y+ +V+ PNKH E+FY HLLESETY+GGHVE LE+GVFRSDL FK+DP+ + L
Sbjct: 502 YQNSVLLPNKHTDPIERFYDGHLLESETYVGGHVESLEAGVFRSDLKNDFKIDPTVIDIL 561
Query: 541 LNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAM 600
L +L L++ I+VE ++E V+N++E+K I +L L+ R E PLIYH+DVA+M
Sbjct: 562 LEDLPYALKFCIEVENNGNMEDVTNFEEIKQQITAQLTDLKINNKRNELPLIYHVDVASM 621
Query: 601 YPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQI 660
YPNI+ TNRLQP S+ ++ C +CDFNRPGK+C R+L+W WRGE F K +Y +K+ +
Sbjct: 622 YPNIMTTNRLQPDSMKDEKDCASCDFNRPGKSCDRRLKWAWRGEFFPAKMDEYGMVKRAL 681
Query: 661 ESEFVDGTNGHLSKSFL---DLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTEL--REAG 715
++E N K FL +L +Q S +K RL Y +K Y RV VTE REA
Sbjct: 682 QNELFPNKNPKSKKQFLTFEELSYSDQVSHIKKRLTDYSRKVYHRV---KVTETVEREAI 738
Query: 716 ICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQ 775
+C REN FYV+TVRSFRDRRYE+KGL K+WKGKLS+ K K EA+ M+VLYDSLQ
Sbjct: 739 VCQRENPFYVNTVRSFRDRRYEFKGLAKLWKGKLSKIKPDDVHSK-DEAKKMIVLYDSLQ 797
Query: 776 LAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIW 835
LAHK ILNSFYGYVMRKG+RWYSMEMAG+ TGA IIQ AR ++E+IG+PLELDTDGIW
Sbjct: 798 LAHKVILNSFYGYVMRKGSRWYSMEMAGITCLTGANIIQMARSVVERIGRPLELDTDGIW 857
Query: 836 CVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSE 895
C+LP SFPENF K ++ KKL +SYPC MLN V + TN QYQ LVDP+ Y+T S+
Sbjct: 858 CILPKSFPENFEIKLRN-GKKLFLSYPCSMLNYKVHQKYTNHQYQDLVDPMKFKYQTKSD 916
Query: 896 CSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQ 955
SI FEVDGPYKAMILP SKEEG IKKRYAVFN+DG+LAELKGFE+KRRGEL+LIK FQ
Sbjct: 917 NSIFFEVDGPYKAMILPTSKEEGKGIKKRYAVFNEDGSLAELKGFELKRRGELQLIKNFQ 976
Query: 956 AELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADY 1015
+++F FL G+T+E CY+AVA VANRWLD+LD++G + +LI+ I E+ +MSK+L +Y
Sbjct: 977 SDIFKLFLEGTTLESCYAAVATVANRWLDVLDSKGAMLETEDLIELICENKSMSKTLKEY 1036
Query: 1016 GEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIM 1075
QKS ++TTARRL +FLG+ MVKD GL+C++I++ +P PV+ERA+PVAIF +D +
Sbjct: 1037 QGQKSTSITTARRLGEFLGEAMVKDAGLQCKFIISSKPHNAPVTERAIPVAIFSSDLHVK 1096
Query: 1076 KFYLRKWCKTSS--DVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDW 1133
+ +LR+W SS D R+I+DW YY++RL+S +QKIITIPAA+Q + NPVPRV HPDW
Sbjct: 1097 RTFLRRWLLDSSLNDFDPRAIIDWDYYRERLASVVQKIITIPAALQNIKNPVPRVEHPDW 1156
Query: 1134 LYKKVREKEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVN 1193
L KK+ EDKF+Q L F S K V+D+ED +S N
Sbjct: 1157 LRKKIAVSEDKFKQTSLNRFFKSTK---------------APPEVKDIED--SFDEHSAN 1199
Query: 1194 GPRPIVRCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKG 1253
R ++ ++++ T + +SL L PSE+ + DY G
Sbjct: 1200 KSRIAKVTYKRKSKRRNGDTALEEESL---LLPSEMPPM---------------LDDYVG 1241
Query: 1254 WLELKKRKWK-DNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQ 1312
WL+ +K KWK ++DR+K++KL + A R+ +G+ R+
Sbjct: 1242 WLQYQKTKWKIQHIDRKKREKLFGKTS------------------RASDRSALGNLIRKH 1283
Query: 1313 ETAMTRCHWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPG-- 1370
+ W+I+Q PS GV + +++ + + + +P+ +N K E FP
Sbjct: 1284 VESYADKSWEILQCKPSIDLGVVEIYALIDRKIQLLKVNIPKTVLMNFK---TENFPSGG 1340
Query: 1371 ------RRVNKTLP-----HGRRSFNLIEVMIDEDQFRKESKKLAALLADPEVEVLGWQQ 1419
+ N LP + S L ++ + ED + E K +++L + V
Sbjct: 1341 IENCIVEKSNAELPNVKGINNESSSQLFKLTMSEDTYFNEVNKASSVLNNENV------- 1393
Query: 1420 NAAKIGMQRCAASSQWFNERISLARYAHILWISDDGVPDLG 1460
+G+ + SS NER+ + R + S + + LG
Sbjct: 1394 ----LGIYESSISS---NERV-IMRLGTCIQFSSEKMGALG 1426
Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 160/633 (25%), Positives = 299/633 (47%), Gaps = 75/633 (11%)
Query: 1400 SKKLAALLADPEVEV---------LGWQQNAAKIGMQRCAASSQWFNERISLARYAHI-- 1448
+K L L A P VE+ L WQ + + + W + I+L++Y++I
Sbjct: 1571 AKLLQPLNAFPVVEIATAETHLPALNWQGQLMRKAVNHILSLGSWISNLITLSKYSNIPI 1630
Query: 1449 --------------------------LWISDDG-VPDLGGTSEE-----DECFADEVHQP 1476
LW +D +PD GG + E D V P
Sbjct: 1631 CNLKVDNLGYIIDLMYARQLKKNNIVLWWNDKSPLPDHGGVERDFDPRKAELMTDLVF-P 1689
Query: 1477 VLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGGLFGFDQDMNSGPYNNELCGFDE 1536
++ P Y V E+ +++ VN +L S +NE EG L + E GF E
Sbjct: 1690 IMNNPDIYDDVIFEISVYNSVVNTVLSSTMLNEAEGTDL------AQNSTSKEESFGFVE 1743
Query: 1537 TTSSAPAFRVVKQLIQRCLTDAVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKV 1596
+ S+ A V++ L++ DA+ N+ AD+++ W+ +P +KL D L +H +
Sbjct: 1744 DSFSSSALSVLRALLKELWDDAL-GDNITADSLVHAFIGWVYNPDAKLFDYALRYHIHTL 1802
Query: 1597 MQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIE 1656
QK L+ EF+ G+++IFA+ +K++I T K + + AY L+KA++++ +F +++
Sbjct: 1803 TQKAVLQLINEFKLAGSSLIFADRNKLLIKTQKRSVENSYAYGQYLMKAIRSKPMFAYLD 1862
Query: 1657 LEPVHFWHSLLFMDQYNYGGIPARADESLDDD--SQVDIVSSWNIAEYLP----KEIQDH 1710
L+ +W L++MD+YNYGG RA ++D S W+I ++LP +E D
Sbjct: 1863 LKIDRYWDVLIWMDKYNYGG---RACLQIEDKEVQSFQAYSHWHIKDFLPAIYQQEFDDW 1919
Query: 1711 FVLVVSEFMYIPWKHAQKLAASRASLQEGSSCTPSITVAAAENFESHIVQYVKGEISSYF 1770
V+++ + + ++ A+++ Q P T+A ++ +S G + F
Sbjct: 1920 LVVILDSMVKTKEAYHERNASTQRLTQ-----LPKNTLADSD-VDSQTDSL--GGFTHNF 1971
Query: 1771 TGKLLSIVRDAIHHMKKMNNDQHNSPGVMQ-TAANIHKV--DAPLEFIKHVCAAFALDQN 1827
+ L+ + ++ D + + T H V + LE +K++ +L N
Sbjct: 1972 SKALIKRAEKLYKNQQEYILDPNFGKDYLSPTIPGSHLVVKNPLLELVKYLSHILSLSSN 2031
Query: 1828 VQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALLA 1887
+ +RK LLK +REF AEF+DP SF++P+ IC +C+ D+D+CR+ +
Sbjct: 2032 HLLEGRALRKELLKTFEIREFDRLAEFKDPSTSFVIPSFICEHCSYISDIDICRES--ME 2089
Query: 1888 QDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAG 1947
+ + C C + ++ ++E +++ ++ + + QD+ C +C+++K ++ C C+G
Sbjct: 2090 RVFICQ--SCNRSLNKNLIEEHVIERLQAQVASFITQDVKCNKCHKIKEDAMSPYCPCSG 2147
Query: 1948 SFRCKEDASDFRSKMQIFLNIANRQGFQLLQEC 1980
+ F +++QIF N+A F+ L+E
Sbjct: 2148 KWELAVSKESFMAQLQIFKNLAESFDFRTLKET 2180
>sp|P87154|DPOE_SCHPO DNA polymerase epsilon catalytic subunit A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol2 PE=2 SV=1
Length = 2199
Score = 1301 bits (3366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 669/1404 (47%), Positives = 894/1404 (63%), Gaps = 76/1404 (5%)
Query: 24 EEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKYK 83
+ E++ +G+D + G R WLL + +E S +D YF+ DG TF+
Sbjct: 51 KNEIDRMMGFDSYEGGQPREAWLLNVHPTVIESTKGNSTLSAVDFYFIQDDGDTFRCTIP 110
Query: 84 FRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDT 143
+ PYFY A +E E V+ YL++++ I + KEDL LKNH+ G K Y+K+ FD
Sbjct: 111 YSPYFYIAAREGKEALVDDYLKKKFVGLIKSTTRIFKEDLQLKNHIVGYQKLYIKLVFDN 170
Query: 144 VQQLMDVKKDLLHVVERNQAKFDAAEAYESI----LTGKREQRPQDFLDCIVDLREYDVP 199
+ L V+K L+ V+ N ++ DA +AY ++ L G E +D L+ ++D+REYDVP
Sbjct: 171 LNDLQAVRKSLMSAVKANSSQQDAVDAYTNLSSENLNGIIENAFEDPLNHVLDIREYDVP 230
Query: 200 YHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDAD 259
YH R ID ++R GQWY VS + ++RAE + AFDIETTKLPLKFPD+
Sbjct: 231 YHSRTLIDLNIRVGQWYTVSYHEGHVQISLLASRIERAEPTIMAFDIETTKLPLKFPDSS 290
Query: 260 YDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFA 319
+D IMMISYM+DGQG+LI NRE + ++IED YTP+ EFEG F + N +E+ LL +F
Sbjct: 291 FDKIMMISYMIDGQGFLITNREIISQNIEDFHYTPREEFEGPFIIFNEPDEVGLLHRFFK 350
Query: 320 HMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCF 379
H++ KP + VTYNGD+FDWPF++ RAA HG ++EE GF D + E ++ + H+D F
Sbjct: 351 HIRSAKPSVIVTYNGDFFDWPFVDARAAFHGLNLTEETGFFRDA-EDEYKSSYCSHMDAF 409
Query: 380 AWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYY 439
WVKRDSYLPQGSQGLKAVT +KLGY+P+E++PE M +A EKPQ++A YSVSDAVATY+
Sbjct: 410 RWVKRDSYLPQGSQGLKAVTVSKLGYNPIELDPELMTPYASEKPQVLAQYSVSDAVATYF 469
Query: 440 LYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFY 499
LYM YVHPFIFSL IIP++PDEVLRKG+GTLCE LL V+A N+I PNKH +KF+
Sbjct: 470 LYMKYVHPFIFSLCNIIPLNPDEVLRKGTGTLCETLLTVEACTKNIILPNKHVDASQKFF 529
Query: 500 RNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMD 559
HLL SETY+GGHVE LESGVFRSDLPT+F +DP YE+L+ LD+ L +++ VE ++
Sbjct: 530 DGHLLASETYVGGHVESLESGVFRSDLPTNFNMDPKVYEELILQLDKALDFSLTVENNVN 589
Query: 560 LESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDE 619
++ + NY+EV+++I++KL L++ P R E P IYHLDVA+MYPNI++TNRLQP S+ +
Sbjct: 590 VDEIENYEEVRDSILKKLSDLRDRPKRSEKPRIYHLDVASMYPNIMITNRLQPDSVKDES 649
Query: 620 VCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESE-FVDGTNGHLSKSFLD 678
C CD N P KTC R++ W WRGE + K+ +Y+ + ++SE F T +SF +
Sbjct: 650 FCATCDLNVPNKTCDRRMVWAWRGEYYPAKKGEYHMIYSALQSERFPGPTPFSPFRSFQE 709
Query: 679 LPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEY 738
L EQ + ++ R+ Y +K Y R+ D V E RE IC +ENSFY+DTV+SFRDRRY++
Sbjct: 710 LSPSEQAAMVQKRIADYSRKVYHRLYDNTVIE-RETIICQKENSFYIDTVKSFRDRRYDF 768
Query: 739 KGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYS 798
KGL K W +L+ K G +I+EA+ MVVLYDSLQLAHK ILNSFYGYVMRKG+RWYS
Sbjct: 769 KGLQKKWVKQLAAIKEKGGLAEIEEAKKMVVLYDSLQLAHKVILNSFYGYVMRKGSRWYS 828
Query: 799 MEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLT 858
+EMAG+ TGA IIQ AR ++E+ G+PLELDTDGIWC+LP SFPENF FK K K+
Sbjct: 829 IEMAGITCLTGATIIQMARQIVERAGRPLELDTDGIWCILPESFPENFEFKKKS-GGKVF 887
Query: 859 ISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEG 918
ISYPCVMLN V TN QY L DP YET SE SI FEVDGPY+AMILPAS EEG
Sbjct: 888 ISYPCVMLNHLVHEKFTNHQYSALKDPEKLVYETTSENSIFFEVDGPYRAMILPASTEEG 947
Query: 919 ILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAV 978
+KKRYAVFN DG+LAELKGFE+KRRGELKLIK FQ+++F FL G ++EECY VA V
Sbjct: 948 KNLKKRYAVFNFDGSLAELKGFEVKRRGELKLIKDFQSQIFKVFLKGDSLEECYQEVAYV 1007
Query: 979 ANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMV 1038
A+ WL++L +G ++ D ELI+ ISE+ +MSK+L++YG QKS ++TTARRL+DFLGD M
Sbjct: 1008 ADTWLEILFTKGSNLTDDELIELISENRSMSKALSEYGSQKSTSITTARRLADFLGDQMT 1067
Query: 1039 KDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSS--DVGIRSIVD 1096
KDKGL C++I++ P+G PV+ERAVPVAIF + + + +LR W K + DV IR I+D
Sbjct: 1068 KDKGLACRFIISASPKGRPVAERAVPVAIFFAEESVKRHFLRLWLKDNGLYDVDIRDIID 1127
Query: 1097 WSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSS 1156
W YY +RL S +QK+I+IPAA+Q++SNPV R PDWL K+V K++Q+K+ IFS
Sbjct: 1128 WDYYLKRLGSVVQKLISIPAALQRISNPVTRFPLPDWLQKRVAVLNSKYQQKKIDSIFS- 1186
Query: 1157 LKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQ 1216
L T + N + V D+ED V ++ K +
Sbjct: 1187 ------LAPTNPSTIN--NTKVTDIEDLG-----------------SVTHKDKRIVARVT 1221
Query: 1217 VDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKRKWKDNLDRRKKQKLGS 1276
L QQ SE P S + + + + Y WL+ K+KW K QK
Sbjct: 1222 KRKLLQQSGNSEA----PVS---FEVKPVSFMDGYSNWLKYAKKKW-------KYQKQVK 1267
Query: 1277 LRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFL 1336
LR H S +++ + M W I+Q+ + G+
Sbjct: 1268 LRRRHLIGFQSRQFTNVL---------------QSSAEVMFENLWHILQIRETDVPGILH 1312
Query: 1337 AWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRV--------NKTLPHGRRSFNLIE 1388
AWV++ + I V R F++ KD E P + N LPHG S L
Sbjct: 1313 AWVIIRNRLTSIRFIVNRKFFVCFKD---ETLPNVEIEGCLIEKSNAILPHGSTSDKLFL 1369
Query: 1389 VMIDEDQFRKESKKLAALLADPEV 1412
+ I E + E ++ + A P V
Sbjct: 1370 LEIPEKSYLTEKVSISMIFAHPSV 1393
Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 174/623 (27%), Positives = 295/623 (47%), Gaps = 62/623 (9%)
Query: 1412 VEVLGWQQNAAKIGMQRCAASSQWFNERISLARYAHI----------------------- 1448
++ L W+Q+ A +Q A W RI L+R++ I
Sbjct: 1590 IQSLSWKQHIATKMIQHFLAIGSWLFHRIQLSRFSDIPLCNFESDDIQYSIDVVYSRKLK 1649
Query: 1449 -----LWISDDGVPDLGGTSEEDECFADEVHQPV-LTYPGAYRKVSVELKIHHLSVNALL 1502
LW + PDLGG ++ P+ + PGAY V++ + +L++ ++L
Sbjct: 1650 EHNIILWWNKGPTPDLGGIEKDSILQIASPKDPLEVNNPGAYSNACVDISLSNLALCSIL 1709
Query: 1503 KSNQVNEMEGGGLFGFDQDMNSGPYNNEL---CGFDETTSSAPAFRVVKQLIQRCLTDAV 1559
S +N++EG G D N++L G + + V+K L++ +A
Sbjct: 1710 NSALINDIEGIGDMAALNDNYMTAINDDLEEKLGIHDNIGLTHSLPVLKALVKTWWNEA- 1768
Query: 1560 TSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFAN 1619
SGN AD I+QHL RW+ S S L+ P+L + +M+K F LL+E ++LGA II A+
Sbjct: 1769 ASGNNLADLIIQHLARWISSSKSYLYSPLLSSHVEVIMRKTFLQLLSEIKRLGAHIIHAS 1828
Query: 1620 FSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPA 1679
+K++I T K + A Y + LLK+++T LF +++L +W LL+MD NYGG
Sbjct: 1829 ANKILIKTSKLIVQNAVTYSNYLLKSIKTLPLFHFLDLNVTEYWDYLLWMDSVNYGGKMV 1888
Query: 1680 RADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQ-- 1737
A+ S ++ +V SW+I +LP IQ F + EF+ +K QKL S +
Sbjct: 1889 AANFSATNEEPQTVV-SWHIKSHLPPIIQPEFQSWIVEFIEEVYK--QKLEKSNTKVGFV 1945
Query: 1738 --EGSSCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMKKMNNDQHNS 1795
+ ++ + + +S ++ +K +++ VR ++ N + +
Sbjct: 1946 RVKNNNADEDSEIVGSGILKSKLIHPLKRKVAQ---------VRRCFQELQLDENTREDL 1996
Query: 1796 PGVMQTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFR 1855
+ ++ D LE +K +CA F L ++ +V ++K+LL ++++EF+ +A FR
Sbjct: 1997 KFPKLPGSFLNYTDGALELVKSICAVFELSHDLNLEVRFLKKSLLSLLQIQEFSTQAVFR 2056
Query: 1856 DPCPSFILPNVICSYCNDCRDLDLC---------RDMALL--AQDWHCAMPQCGQPYDRE 1904
P L + C C +D DLC DM L + W C+ C YDR
Sbjct: 2057 YPSRRLSLDQIPCKQCGVHQDFDLCLHEHLWPTRDDMGTLVFSDGWSCS--SCNLVYDRW 2114
Query: 1905 VMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQI 1964
V E L+ + + LY LQDL+C +C VK L E+C+C+G + + + FR + +
Sbjct: 2115 VFEETLVDNLYHQLTLYQLQDLICSKCKTVKQWSLKERCSCSGEWVLQLSPTKFREMLNV 2174
Query: 1965 FLNIANRQGFQLLQECTSWILEV 1987
+ ++A+ F +LQ IL V
Sbjct: 2175 YQSVADFYEFSILQNSVQSILSV 2197
>sp|Q6BNG2|DPOE_DEBHA DNA polymerase epsilon catalytic subunit A OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=POL2 PE=3 SV=2
Length = 2226
Score = 1300 bits (3364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/1424 (47%), Positives = 924/1424 (64%), Gaps = 87/1424 (6%)
Query: 25 EELEAKLGYDLFSEGD-----KRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFK 79
++L++ +G+D G+ R GWL+ ++++ ++ YS +D YF+ ++G +FK
Sbjct: 59 DQLDSIMGFDRIEHGEMDGAKPRRGWLVNMHATTIPTDEYLAGYSGVDYYFLDEEGGSFK 118
Query: 80 SKYKFRPYFYAATKEKMEMDVEAYLRRRYES-QIADIEILEKEDLDLKNHLSGLHKSYLK 138
+ ++ PYFY E +VE LR+ E + + + KEDL L NHL GL K+ +K
Sbjct: 119 ATIRYDPYFYLVVIPGHESEVEEMLRKVLEPCSLKGLLRVAKEDLSLPNHLVGLKKTLVK 178
Query: 139 ISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESI----------------LTGKREQR 182
+SF V L+ ++ L +++ N+ K D + Y+ + K ++
Sbjct: 179 LSFHNVVDLLSARRLLNPIIKDNKMKRDTRDIYQVMNFNNVNNANGTEIQTNFNDKSTEQ 238
Query: 183 PQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVC 242
D I D+REYDVPYH+R +ID +R G+WY+V + + LE+ + + A+ +
Sbjct: 239 IADPATLIDDIREYDVPYHVRVSIDEKIRVGKWYNVFVKHSEVRLEEDKEKIAFADPVIL 298
Query: 243 AFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYF 302
AFDIETTK PLKFPDA D IMMISYM+DG+G+LI NRE + EDIED EYTPKPE+ G F
Sbjct: 299 AFDIETTKAPLKFPDAKTDQIMMISYMIDGEGFLITNREIISEDIEDFEYTPKPEYPGLF 358
Query: 303 KVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCD 362
+ N +E +L +F H+++ +P + T+NGD+FDWPF+E R H M EE+GF D
Sbjct: 359 TIFNEPDEKMVLVRFFEHIRDSRPTVIATFNGDFFDWPFVEKRTTFHDMDMFEEIGFAKD 418
Query: 363 KNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEK 422
N+GE ++K+ H+DC+ WVKRDSYLPQGSQGLKAVT AKLGY+P E++PE M +A EK
Sbjct: 419 -NEGEYKSKYCVHMDCYRWVKRDSYLPQGSQGLKAVTTAKLGYNPTELDPELMTPYAYEK 477
Query: 423 PQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYK 482
PQ+++ YSVSDAVATYYLY YVHPFIFSL TIIP++PDEVLRKG+GTLCEMLLMVQAY+
Sbjct: 478 PQLLSEYSVSDAVATYYLYYKYVHPFIFSLCTIIPLNPDEVLRKGTGTLCEMLLMVQAYE 537
Query: 483 ANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLN 542
++ PNKH E+FY HLLESETY+GGHVE LE+GVFRSDLP FK+DP+A +++L
Sbjct: 538 NGIVLPNKHTEPIERFYDGHLLESETYVGGHVESLEAGVFRSDLPNDFKVDPTAVDEILG 597
Query: 543 NLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYP 602
+L L++ I+VE +E V NYDEV N I + L+ L+E PIR E PLI+H+DVA+MYP
Sbjct: 598 DLHNALKFCIEVENNKKVEDVENYDEVYNQIKDSLVNLRETPIRHENPLIFHVDVASMYP 657
Query: 603 NIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIES 662
NI+ +NRLQP S+ ++E C ACDFNRPGK C R+L W WRGE + + ++Y +K+ +++
Sbjct: 658 NIMTSNRLQPDSMKSEEDCAACDFNRPGKNCDRRLPWSWRGEYYPAEMNEYGMIKRTLQN 717
Query: 663 EFVDGTNGHL-SKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMREN 721
E L +K+F +L EQ S +K RL Y +K Y R+ + T REA +C REN
Sbjct: 718 ETFPPAKPWLPAKTFDELSYSEQASLIKKRLSDYSRKVYHRI-KQSKTVSREAIVCQREN 776
Query: 722 SFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCI 781
FYVDTVRSFRDRRYE+K L KVWKGK ++ ++I EA+ MVVLYDSLQLAHK I
Sbjct: 777 PFYVDTVRSFRDRRYEFKTLVKVWKGKTAKIDKH-DTIAKDEAKKMVVLYDSLQLAHKVI 835
Query: 782 LNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGS 841
LNSFYGYVMRKG+RWYSMEMAG+ TGA IIQ AR L+E++G+PLELDTDGIWC+LP S
Sbjct: 836 LNSFYGYVMRKGSRWYSMEMAGITCLTGATIIQMARSLVERLGRPLELDTDGIWCILPKS 895
Query: 842 FPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFE 901
FPEN+ FK KD K + + YPC MLN V TN QYQ LVDP + Y+T SE SI FE
Sbjct: 896 FPENYYFKCKD-GKNIFLEYPCSMLNYLVHDKFTNHQYQDLVDPNTFKYKTRSENSIFFE 954
Query: 902 VDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDK 961
VDGPYKAM+LP SKEEG +KKRYAVFNDDG+LAELKGFE+KRRGEL+LIK FQ+++F
Sbjct: 955 VDGPYKAMVLPTSKEEGKGLKKRYAVFNDDGSLAELKGFELKRRGELQLIKNFQSDIFKL 1014
Query: 962 FLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSC 1021
FL G ++E CY +VA VAN WLD+LD +G + D +LI+ I E+ +MSKSLA+YG QKS
Sbjct: 1015 FLDGDSLENCYKSVATVANNWLDVLDTKGGMLEDEDLIELICENRSMSKSLAEYGNQKST 1074
Query: 1022 AVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRK 1081
++TTA+RL +FLG+ M+KD GL C+YI++ +P G+PV+ERAVPV+IF ++ + +F+L+K
Sbjct: 1075 SITTAKRLGEFLGEEMIKDAGLACKYIISSKPIGSPVTERAVPVSIFSSEKK--EFFLKK 1132
Query: 1082 WCKTSS--DVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVR 1139
W K S + RS++DW+YY +RL+S +QKII+IPAA+Q + NPVPRV HP+WL KK+
Sbjct: 1133 WLKDPSLENFDPRSVIDWNYYYERLASVVQKIISIPAALQDIKNPVPRVPHPEWLQKKIN 1192
Query: 1140 EKEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIV 1199
KED +Q + F K + L K+ + ++D+EDF ++ P
Sbjct: 1193 SKEDSKQQSSISSFFGQATKKEVLQKSIKS--------IQDIEDF-----GELDASIPKG 1239
Query: 1200 RCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQN--AIDTENIDRIVDYKGWLEL 1257
R +V + + R+ + + VSD + +N ++ E DY G+L+
Sbjct: 1240 RVSKVTSRK------------RRNGKANNVSDSEEEERNNAILNGECPSMTEDYAGFLQY 1287
Query: 1258 KKRKWK---DNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQET 1314
+K KWK N +RRKK GS + E+ R+ VG RRQ
Sbjct: 1288 QKAKWKVQEKNRERRKKL-FGS-------------------NAESSHRSSVGGIIRRQAE 1327
Query: 1315 AMTRCHWQIIQL-VPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGR-- 1371
+ W+I++ S+ G +V + VP+ Y + K + K R
Sbjct: 1328 NIAGSDWEILEYKADPSKPGDIKVYVSASNKVHSFTFHVPKKVYASFKTELSPKKAIRNC 1387
Query: 1372 ---RVNKTLPHGRRSFNLIEVMIDEDQFRKESKKLAALLADPEV 1412
+ LP+G NL ++ + E+ + +ES K+ +LL D +
Sbjct: 1388 EIEKSTAVLPNGHDGSNLYKLTMPEETYLEESTKVESLLQDSNI 1431
Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 165/611 (27%), Positives = 289/611 (47%), Gaps = 68/611 (11%)
Query: 1414 VLGWQQNAAKIGMQRCAASSQWFNERISLARYAHI------------------------- 1448
+GWQ K + + W + ISLA+Y ++
Sbjct: 1630 AVGWQSLIIKRVVNHYFVLASWIKKLISLAKYGNVPLCNLQIENMGYLIDIEYARRLSQS 1689
Query: 1449 ---LWISDDGVPDLGGTSEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALLKSN 1505
LW+S +PD GG + + + P + P Y +E++I L++N +L S
Sbjct: 1690 NIVLWLSSRPLPDHGGFEMDKAQDFENLEFPTINNPEIYETACLEVEIGTLTINTILTSA 1749
Query: 1506 QVNEMEGGGLFGFDQDMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTDAVTSGNVF 1565
+NE EG L D NN E + S PA +++ +++ DA+ + N
Sbjct: 1750 LINEAEGTDL---ADDAVQFDNNNGASTIAEDSFSTPALSILRGMVKDWWDDALKN-NDN 1805
Query: 1566 ADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKVII 1625
AD+++ +L W+ S L+D LH +H + K L+ EF+++ A +IFAN +K++I
Sbjct: 1806 ADSMMNNLVTWVQRSDSLLYDYSLHYHVHNLTTKALLQLIGEFKRMNAQVIFANRNKMLI 1865
Query: 1626 DTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPARADESL 1685
T K + + AY +LKA +++ LF +++L V +W L++MD+YN+GG E
Sbjct: 1866 QTTKVSIENSYAYGQYILKAARSKPLFNFLDLRIVKYWDLLVWMDEYNFGG--RCCTEIT 1923
Query: 1686 DDDSQVDI-VSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQEGS-SCT 1743
+D+ Q I V+ W I ++LP Q+ F +++ I K +L G+ + T
Sbjct: 1924 NDEVQNLIPVNKWQITKFLPVIFQNEF----EDWLIIFLDSLTKFKND--TLIPGTQTGT 1977
Query: 1744 PSITVAAAENFESHIVQYVKG---------EISSYFTGKLLSIVRDAIHHMKKMNNDQHN 1794
P +T A HI++ K IS+ ++ I + + N+
Sbjct: 1978 PRVTQIA------HILKGQKKLDSNETEEESISNGVMELFRKPLQKRIEKLARRQNESIL 2031
Query: 1795 SPGVMQ-------TAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVRE 1847
+P + Q + + LE +K +CA F L + +V ++R+ LL ++E
Sbjct: 2032 NPELRQEYEFPKLPGSYTSMKNPSLELVKFLCAVFGLSRKRNIEVRLLRRELLSIFDIKE 2091
Query: 1848 FAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALLAQDWHCAMPQCGQPYDREVME 1907
F+ EA F++P S +P+VIC YCN RD+D CRD W+C+ C + Y+R +E
Sbjct: 2092 FSDEAAFKNPSSSLKIPHVICDYCNYIRDIDFCRDEQ--KNIWNCS--NCNKTYNRVAIE 2147
Query: 1908 NALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLN 1967
L+ + +++QDL C +C+Q+K+ +++E C C+G + ++ ++QIF N
Sbjct: 2148 EELVAQYNKLLTKFYIQDLKCSKCHQIKSDNMSEYCKCSGKWTETLKYTEVDKRLQIFSN 2207
Query: 1968 IANRQGFQLLQ 1978
+ QLL+
Sbjct: 2208 VGGFFNLQLLK 2218
>sp|Q752B8|DPOE_ASHGO DNA polymerase epsilon catalytic subunit A OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=POL2 PE=3 SV=2
Length = 2180
Score = 1246 bits (3223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/1394 (47%), Positives = 894/1394 (64%), Gaps = 100/1394 (7%)
Query: 41 KRLGWLLTFASSSLEDEDTRKV----YSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKM 96
+R+GWL + + DE + +D YF+ ++G +FKS + PYF + ++
Sbjct: 63 ERIGWLCNMHPTVVADELNAGASGVGVAGVDFYFLDEEGGSFKSTILYDPYFLLSCQDSN 122
Query: 97 EM-DVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLL 155
+ DVE +L++ E + +E+++K+DL + NHL GL ++ LK++F L + +K L
Sbjct: 123 RVHDVEEFLKKYLEGCLKTVEVVQKDDLAMDNHLVGLKRTLLKLNFVNTNNLFEARKLLR 182
Query: 156 HVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQW 215
+++ N+ + Y T R +D I D+REYDVPYH+R ID ++R G+W
Sbjct: 183 PILKDNEENQQQRDIYSLNDTTNR----RDAKMLIDDIREYDVPYHVRVCIDKEIRVGKW 238
Query: 216 YDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGY 275
Y V+ +G L+E D + A+ V AFDIETTK PLKFPD+ D IMMISYM+DG+GY
Sbjct: 239 YRVT---SGGLVE-YTDKVAFADPVVLAFDIETTKAPLKFPDSAIDQIMMISYMIDGEGY 294
Query: 276 LIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGD 335
LI NRE + EDIED EYTPKPE++G F V N +E LL +F H+++V+P + T+NGD
Sbjct: 295 LITNREIISEDIEDFEYTPKPEYQGLFTVFNEEDERSLLERFFEHIRDVRPTVISTFNGD 354
Query: 336 YFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGL 395
+FDWPF+E R+ G M +E+GF D ++GE ++ + H+DC+ WVKRDSYLPQGSQGL
Sbjct: 355 FFDWPFVEARSKIRGLSMFDEIGFAPD-SEGEYKSSYCAHMDCYRWVKRDSYLPQGSQGL 413
Query: 396 KAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATI 455
KAVT+ KLGY+P+E++PE M +A EKPQ ++ YSVSDAVATYYLYM YVHPFIFSL T+
Sbjct: 414 KAVTQVKLGYNPIELDPELMTPYAYEKPQHLSEYSVSDAVATYYLYMKYVHPFIFSLCTV 473
Query: 456 IPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVE 515
+P++PDEVLRKG+GTLCEMLLMVQAY ++ PNKH E+FY HLLESETY+GGHVE
Sbjct: 474 LPLNPDEVLRKGTGTLCEMLLMVQAYDHGILLPNKHTEPIERFYDGHLLESETYVGGHVE 533
Query: 516 CLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIME 575
LE+GVFRSD+ F +D +A ++LL +L L++ I+VE K +E V +++++ N I E
Sbjct: 534 SLEAGVFRSDIDCDFTIDSTAIDELLQDLPHALKFCIEVENKTKVEDVLDFEDILNTITE 593
Query: 576 KLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLR 635
+L L+ R+E PLIYH+DVA+MYPNI+ TNRLQP S+ T+ C +CDFNRPGK C R
Sbjct: 594 QLQELKMNNKRKELPLIYHVDVASMYPNIMTTNRLQPDSMKTERDCASCDFNRPGKKCDR 653
Query: 636 KLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSKSFL---DLPKMEQQSRLKDRL 692
+L+W WRGE K +Y +K+ + +E + +K L +L EQ S +K RL
Sbjct: 654 RLKWTWRGEFLPAKMDEYAMVKRALMNEVFPNKYKNTTKKLLTFDELSYSEQVSHIKKRL 713
Query: 693 KKYCQKAYKRVLDKPVTE--LREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLS 750
+Y +K Y RV VTE +RE+ +C REN FYV+TVRSFRDRRYE+KG K WK KLS
Sbjct: 714 SEYSRKVYHRV---KVTESVVRESIVCQRENPFYVNTVRSFRDRRYEFKGHAKTWKKKLS 770
Query: 751 EAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGA 810
+ + + EA+ M+VLYDSLQLAHK ILNSFYGY MRKG+RWYS+EMAG+ TGA
Sbjct: 771 QIDPE-DKVARDEARKMIVLYDSLQLAHKVILNSFYGYAMRKGSRWYSIEMAGITCSTGA 829
Query: 811 KIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDV 870
IIQ AR L+E+IG+PLELDTDGIWC++P SFPENF F K+ KKL +SYPC MLN V
Sbjct: 830 TIIQMARALVERIGRPLELDTDGIWCIIPRSFPENFEFTLKN-GKKLYLSYPCSMLNYKV 888
Query: 871 ARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFND 930
++ TN QYQ LV+ Y+ S+ SI FEVDGPYKAMILP SKEEG IKKRYAVFN+
Sbjct: 889 HQSFTNHQYQELVNDAKHKYKISSDNSIFFEVDGPYKAMILPTSKEEGKGIKKRYAVFNE 948
Query: 931 DGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQG 990
DG+LAELKGFE+KRRGEL+LIK FQ ++F FL G T+EECY AVA VANRWLD+LD++G
Sbjct: 949 DGSLAELKGFELKRRGELQLIKNFQQDIFKVFLEGRTLEECYGAVAKVANRWLDILDSKG 1008
Query: 991 KDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVA 1050
+ +LID I E+ +MSK L +Y QKS ++TTARRL +FLG MVKD GL+C++I++
Sbjct: 1009 SMLETEDLIDLICENKSMSKKLKEYDGQKSTSITTARRLGEFLGQEMVKDAGLQCKFIIS 1068
Query: 1051 CEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSS--DVGIRSIVDWSYYKQRLSSAI 1108
+P PV+ERA+PVAIF D I K +LRKW SS + +R+I+DW+YY++RL+S I
Sbjct: 1069 SKPANAPVTERAIPVAIFSADHNIKKLFLRKWLLDSSLDNFDLRAILDWNYYRERLASVI 1128
Query: 1109 QKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKDDFLNKTCN 1168
QKIITIPAA+Q V+NPVPRV HP+WL KK+ E KF+Q + F
Sbjct: 1129 QKIITIPAALQNVNNPVPRVDHPEWLRKKIATSESKFKQTSIGRFFK------------- 1175
Query: 1169 AETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLRQQLEPSE 1228
++N M E + D+ED + E + +V + +++ +E
Sbjct: 1176 -KSNGMPE-IADIEDNA------------------FSTESSSGAKVARVVTKKKRKRENE 1215
Query: 1229 VSDQQ---PSSQNAIDTENIDRIVDYKGWLELKKRKWKDNLDRRKKQKLGSLRASHQANG 1285
D Q PS AID DY GWL +K KW+ + R ++K Q G
Sbjct: 1216 TKDNQPVLPSVMPAIDE-------DYVGWLNYQKIKWQLQAEERHRRK--------QLFG 1260
Query: 1286 VSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVVEGIM 1345
S +L D R+ +G+ ++ + W+I+Q SS+ GV ++ G +
Sbjct: 1261 SSSTLND---------RSALGNIIKKHAESYANSDWEILQYKNSSEPGVVEVHALISGKV 1311
Query: 1346 VRIPITVPRLFYLNSKDPIVEKFPG-------RRVNKTLPHGRR-SFN----LIEVMIDE 1393
+ + + +L K + PG + N LP+ + S+N L V E
Sbjct: 1312 QSLKFHIHKTVFLKFKTDTLP--PGGIPNCVIEKSNAILPNTKEDSYNTSSSLFRVTCPE 1369
Query: 1394 DQFRKESKKLAALL 1407
F E K++++
Sbjct: 1370 TVFLDEQNKVSSVF 1383
Score = 201 bits (511), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 139/538 (25%), Positives = 256/538 (47%), Gaps = 25/538 (4%)
Query: 1448 ILWISDDGVPDLGGTSEEDE----CFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALLK 1503
+ W +PD GG E A ++ PV+ P Y +E+++++L VN +L
Sbjct: 1652 LWWNQKQPLPDRGGIQNEYNPHTLSLATDLTSPVINNPEFYDSAVLEIEVNNLLVNTILT 1711
Query: 1504 SNQVNEMEGGGLFGFDQDMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTDAVTSGN 1563
S +NE EGG + G + G GF E S + +++ L++ DA+ + N
Sbjct: 1712 STLINEAEGGDVAGPESGGREG------GGFVEDAFSTASVNILRSLLKDLWDDALQN-N 1764
Query: 1564 VFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKV 1623
AD+++ W+ S SKL D L ++ + +K L+ EFR +G+ ++F + +K+
Sbjct: 1765 STADSLVHSFIGWVQSVDSKLFDYTLRYYVNMLTKKALFQLINEFRFMGSQVVFLDRNKI 1824
Query: 1624 IIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPARADE 1683
++ T K + + AY L+KA++TR LF +++L+ V +W LL+MDQYN+GG E
Sbjct: 1825 LLKTSKNTIDNSYAYGQYLIKAIRTRPLFSYLDLKIVRYWDILLWMDQYNHGGCACLKIE 1884
Query: 1684 SLDDDSQVDIVSSWNIAEYLPKEIQDHF---VLVVSEFMYIPWKHAQKLAASRASLQEGS 1740
+ + SSW+I +L Q F ++++ + M + +L+ ++ Q
Sbjct: 1885 E-KERQDIQAYSSWHIKNFLAPIYQQEFDDWLVIILDSMIKCKQQFYELSGTQRLTQ--- 1940
Query: 1741 SCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMKKMN-NDQHNSPGVM 1799
P+ + AA E+ E+ + F ++ + + ++ N + P +
Sbjct: 1941 --LPNRSQAADEDDENSVFAGFTKRFYQPFINRISKLYKTQQEYILDPNFRADYIIPDLP 1998
Query: 1800 QTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCP 1859
+ + LE +K +C L + +V +RK L+ +REF A F +P
Sbjct: 1999 GRNPKMKAGNPLLELVKSLCHVLLLCKERTLEVRALRKEALEVFEIREFDSSASFENPAS 2058
Query: 1860 SFILPNVICSYCNDCRDLDLCRDMALLAQDWHCAMPQCGQPYDREVMENALLQIVRQRER 1919
S I+ N +C C DLD+C M+ L + C+ +C + + +E L+Q ++ +
Sbjct: 2059 SLIINNFMCENCAYFSDLDIC--MSDLRSMFKCS--KCYRTLRKPFIEENLIQKLQIQTI 2114
Query: 1920 LYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLL 1977
Y QDL C +C ++K+ ++ C C+G + + +Q+F ++A GF LL
Sbjct: 2115 AYISQDLRCAKCRKIKSDTMSAYCTCSGKWVQTISKDTYLKNVQLFYHVAEYFGFSLL 2172
>sp|Q6C4J0|DPOE_YARLI DNA polymerase epsilon catalytic subunit A OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=POL2 PE=3 SV=1
Length = 2183
Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/1451 (40%), Positives = 851/1451 (58%), Gaps = 96/1451 (6%)
Query: 1 MDRRRWDRQDGRRTKKQKLIRSAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTR 60
+RRR +R + K + R + ++ ++G+ FS +KR+GWL+ + L+ E
Sbjct: 20 FERRRLERIEQLGQKFAAVER--RDAIDDRMGFTRFSGDEKRVGWLVNMHETLLQSETAE 77
Query: 61 KVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEK 120
+ + +D YF ++G FKS FRPYF+ K E V+ + + +E +A EI+ K
Sbjct: 78 RGLAAVDYYFYDEEGGNFKSTVVFRPYFFVICKPHTEHAVKDLMEKMFERVLASTEIVTK 137
Query: 121 EDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVER-NQAKFDAAEAYESILTGKR 179
EDL+L NHL+G + +K+ F + L + L +V+R Q YE L G
Sbjct: 138 EDLNLTNHLTGKKRKAVKLEFHNSEDLSSTRFTLSKIVDRQTQQTEQHLNIYE--LEGDV 195
Query: 180 EQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEV 239
+ D I ++E+DVP+ R AID D+R G WY+V+ + +L+ V+ RA+
Sbjct: 196 DTS-TDVESSITGIKEFDVPFETRVAIDLDIRVGNWYEVTKENDTAVLKHMVEREYRADP 254
Query: 240 HVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFE 299
V A+DIET K PL+FPD+ D IMMISYM+DG+G+LI NRE V EDIED EYTPKPEF
Sbjct: 255 VVMAYDIETEKAPLRFPDSAVDRIMMISYMIDGEGFLITNREMVSEDIEDFEYTPKPEFP 314
Query: 300 GYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGF 359
G F + N NE +L WF H+++V P + +YNGD+FD+PF++ R A HG + +E+G+
Sbjct: 315 GNFTIFNEPNEKAVLEKWFEHIRDVCPTVMTSYNGDFFDFPFIDKRTAFHGMNLYDEIGW 374
Query: 360 Q-CDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF 418
+ ++ + EC + H+DC WVKRDSYLPQGSQGLKAVTK KL YDP E++PE M +
Sbjct: 375 KKVEEERYEC--SYCVHMDCLNWVKRDSYLPQGSQGLKAVTKVKLSYDPKELDPEKMTPY 432
Query: 419 AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMV 478
A++ PQ++A YSVSDAVATYYLYM YVHPFIFSL IIP++PD VLRKG+GTLCEMLLMV
Sbjct: 433 ARDHPQILAEYSVSDAVATYYLYMKYVHPFIFSLCCIIPLNPDAVLRKGTGTLCEMLLMV 492
Query: 479 QAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYE 538
+AY+ +I P+KH+ E+ Y+ HL+++ETY GGHVE L +GVFRSD+ F +D ++ +
Sbjct: 493 KAYEGRIILPDKHKPALERHYKGHLVDNETYTGGHVESLAAGVFRSDIMVDFDIDTNSID 552
Query: 539 QLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVA 598
+LL NLD L++ + VE N DEV++ I+E+L L+ P R + PLIYH+DVA
Sbjct: 553 ELLVNLDETLEFCVTVEAGKKSSDFENLDEVRDQIIEQLQELKSNPKRSDYPLIYHVDVA 612
Query: 599 AMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKK 658
+MYPNI+ TNRLQP S+V ++ C CD+NRP KTC R+LEW R + + + D +LK+
Sbjct: 613 SMYPNIMTTNRLQPDSMVDEKDCAVCDYNRPDKTCARELEWARRVDYYPVSKGDVNNLKQ 672
Query: 659 QIESEFVDGTNGHLS-------------------KSFLDLPKMEQQSRLKDRLKKYCQKA 699
+ E+ G G+ S K + L EQ ++LK+R+ + K
Sbjct: 673 GLVEEYSGGRFGNGSSVEISYDEGMTEREKFQKRKGWAGLSGQEQANKLKERVAAFSLKT 732
Query: 700 YKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSI 759
R D T +++ +C REN FYVD V+ F+ RR +YK K W EA ++ +
Sbjct: 733 KARKTDSETT-VQKTIVCQRENPFYVDVVQEFKQRRIDYKTKAKRWN---KEAASASDPA 788
Query: 760 KIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLL 819
+EA+ M + DS+QLAHK ILNSFYGYVMRKG+RWYSMEMAGV YTGAKII+ AR
Sbjct: 789 SREEAKKMAITNDSMQLAHKVILNSFYGYVMRKGSRWYSMEMAGVTCYTGAKIIKIARQT 848
Query: 820 IEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQY 879
+E +G PLELDTDGIWC+LP +FPE F K KD + YPC ++N V R+ TN QY
Sbjct: 849 MEGLGIPLELDTDGIWCMLPKTFPEKFKCKFKD-GSSYELEYPCSIMNYLVHRDFTNHQY 907
Query: 880 QTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKG 939
Q L +P + Y+THSE SI FE+DGPYK M++P S ++G +KKRY VF+D + ELKG
Sbjct: 908 QKL-NPETGKYDTHSENSIFFELDGPYKCMMMPTSTDKGKGLKKRYVVFDDRNKIVELKG 966
Query: 940 FEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELI 999
FE+KRRGEL LIK FQ++L+D FL GS + ECY+A A VA WL ++D++GK+++D ELI
Sbjct: 967 FEVKRRGELSLIKKFQSQLWDTFLEGSNLVECYAAQARVAEAWLAVIDSRGKNLSDEELI 1026
Query: 1000 DYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGT-PV 1058
D + E+ +MSK + +YG QKS A+TTARRL++ +GD+++ L +YI+A + + PV
Sbjct: 1027 DLVCENKSMSKPVHEYGSQKSTALTTARRLAEIMGDSILTGGKLSTKYIIAVRTKNSMPV 1086
Query: 1059 SE-------------RAVPVAIFETDA--EIMKFYLRKWCKTS-SDVGIRSIVDWSYYKQ 1102
E RA+P +FET++ E ++F L++W R ++DW YY++
Sbjct: 1087 PEAKKGSDEDSSTADRAIPTLVFETESLDEKLRF-LKRWMGPRWESTDPRDVIDWMYYRE 1145
Query: 1103 RLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKDDF 1162
RL++ I K++ IPA + + NPV P+W ++++++ +Q L F K
Sbjct: 1146 RLATTINKLVVIPAILLGLKNPVRGCDPPEWASDIIKQRDNPIKQSTLSSYFVKGKLPT- 1204
Query: 1163 LNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLRQ 1222
+ E +M+ V D+E S P R +KTV+ TD+
Sbjct: 1205 PEPILSEEDEVMEIQVGDIESIGTTPSPS-RPPGVPARVVVSKRVRKTVEETDK------ 1257
Query: 1223 QLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKRKWKDNLDRRKKQKLGSLRASHQ 1282
S ++ + D DY +++ K KWK +R ++
Sbjct: 1258 -------------STPSLPHKAPDPFADYAAYIKYAKVKWKHQKAQRDRRA--------- 1295
Query: 1283 ANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVVE 1342
H + G+ S + + + + W ++ + + + G A V++
Sbjct: 1296 -------------HLFGESDNGIASSWVSKNAHLAQDAWHLVSIHAAEKPGQVEASVIIG 1342
Query: 1343 GIMVRIPITVPRLFYLNSKDPIV-EKFPGRRVNKTLPHGRRSFNLIEVMIDEDQFRKESK 1401
M R+ I VPR Y+ S++P+ +KF + + L ++ ED ++ E
Sbjct: 1343 DKMQRVQINVPRKVYVGSREPLKWDKFTDVTNAMAVAEEEQPKYLYRAVMSEDMYQTEMT 1402
Query: 1402 KLAALLADPEV 1412
+ L DP V
Sbjct: 1403 NPESPLKDPHV 1413
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 150/631 (23%), Positives = 275/631 (43%), Gaps = 83/631 (13%)
Query: 1380 GRRSFNLIEVMIDEDQFRKESKKLAALL---------ADPEVEVLGWQQNAAKIGMQRCA 1430
G R+ L+ + D R +K+AAL P +GWQ++ + +
Sbjct: 1569 GSRNGQLVFALHSPD--RNVDEKVAALARIPCIRLRPVPPSTAAVGWQRDLVRRLIASFL 1626
Query: 1431 ASSQWFNERISLARYAH--------------------------ILWISDDGVPDLGGTSE 1464
+ + + +ARYA +LW S GG
Sbjct: 1627 SHGANISYLVEMARYAKMPLCHVQDTRDVIDVSYARRLIQNSVVLWWS--AALSTGG--- 1681
Query: 1465 EDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGGLFGFDQDMNS 1524
D+ PV PG Y + E+KI HL +NALL+S + + EG
Sbjct: 1682 ---ALTDQAEVPVANNPGLYTNICFEIKIEHLVLNALLQSAVIQDTEGD----------- 1727
Query: 1525 GPYNNELCGFDETTSSAPAFRVVKQLIQRCLTDAVTSGNVFADAILQHLYRWLCSPHSKL 1584
+NEL + A + +K +++ +L + W+ +P S+L
Sbjct: 1728 --IHNELLS---NAFNPHALKTLKMVVKEWWEHG--DKKRPPQDLLDNFTVWVYAPESRL 1780
Query: 1585 HDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLK 1644
P L + +K F L E RK A +++A+ K+++ T K +L +Y + +++
Sbjct: 1781 FSPQLLYHTQNLTKKTFLYLAQECRKHQAQLVYADQHKLVLQTEKTELQLVYSYSNYIVR 1840
Query: 1645 ALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPARADESLDDDSQVD-IVSSWNIAEYL 1703
++T + +++ ++ +W + L+MD++NYGG +D +D Q + ++ W+IA +L
Sbjct: 1841 QIRTHPILKYVSVDITRYWDTFLWMDKWNYGGY--SSDVIVDPSKQSESLLMHWHIANFL 1898
Query: 1704 PKEIQDHFVLVVSEFMYIPWKHAQKLAASRAS-LQEGSSCTPSITVAAAENFESHIVQYV 1762
P+ +Q F V E++++ +K +R + + + S TP +T ++ ++
Sbjct: 1899 PETLQQEFSKWVQEYIHL--LRLRKYPENRTTDVDDMPSDTPMLTDGDKDDAALLSDKFF 1956
Query: 1763 KGEISSYFTGKLLSIVRDAIHHMKKM--NNDQHNS------PGVMQTAANIHKVDAPLEF 1814
+ SY KL+ V+ + + + D ++ PG M + + +EF
Sbjct: 1957 GKGVVSYLHPKLVRRVKLLAQKLSDVLSSGDSIDAFKFPVLPGSMIQP----ETNPVVEF 2012
Query: 1815 IKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFILPNVICSYCNDC 1874
K+VC + ++ +V ++ ++LL + EF+ E FRDP S L N++C C +
Sbjct: 2013 AKYVCHIYGINAKANFEVQILLRDLLNIFDINEFSEEGTFRDPSMSLKLTNMMCFKCKNP 2072
Query: 1875 RDLDLCRDMALLAQDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQV 1934
DLDLC+D + C P C YD ++E L+ +++ Y QD C +C +V
Sbjct: 2073 CDLDLCKDSCCTKSGFRC--PLCNSLYDMVIVEQRLVGQLQRMILEYETQDFRCDKCRRV 2130
Query: 1935 KAAHLAEQCACAGSFRCKEDASDFRSKMQIF 1965
K L E C C+GS+ A D ++ I+
Sbjct: 2131 KEYELTEFCPCSGSWVTIMSAEDVHKELSIY 2161
>sp|Q58295|DPOL_METJA DNA polymerase OS=Methanocaldococcus jannaschii (strain ATCC 43067
/ DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pol
PE=3 SV=2
Length = 1634
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 159/354 (44%), Gaps = 41/354 (11%)
Query: 188 DCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIE 247
+ + ++ E+D+P+ R+ IDN++ ++D K+ ++ ++ AFD+E
Sbjct: 113 EIVKEIYEHDIPFAKRYLIDNEIIPMTYWDFE--------NKKPVSIEIPKLKSVAFDME 164
Query: 248 TTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNV 307
+ P+ + D I+M S+ + G +I +E +IE V
Sbjct: 165 VYNRDTE-PNPERDPILMASFWDENGGKVITYKEFNHPNIE-----------------VV 206
Query: 308 NNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGF-----KMSEELGFQCD 362
NE EL++ ++E + TYNGD FD+P+L+ RA +G K EEL +
Sbjct: 207 KNEKELIKKIIETLKEY--DVIYTYNGDNFDFPYLKARAKIYGIDINLGKDGEELKIKRG 264
Query: 363 KNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEK 422
+ H+D + +R L L+ V G + L++ +V +
Sbjct: 265 GMEYRSYIPGRVHIDLYPISRR--LLKLTKYTLEDVVYNLFGIEKLKIPHTKIVDYWANN 322
Query: 423 PQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYK 482
+ + YS+ DA TY + Y P + I+ +P E+ R SG + E LLM +A+K
Sbjct: 323 DKTLIEYSLQDAKYTYKI-GKYFFPLEVMFSRIVNQTPFEITRMSSGQMVEYLLMKRAFK 381
Query: 483 ANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSA 536
N+I PNK D E++ R L TY GG+V+ E G+F + F+ P
Sbjct: 382 ENMIVPNK--PDEEEYRRRVL---TTYEGGYVKEPEKGMFEDIISMDFRCHPKG 430
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 103/263 (39%), Gaps = 54/263 (20%)
Query: 783 NSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIG-KPLELDTDGIWCVLPGS 841
NS YGY+ AR+YS E A +VTY G K I EK G K L +DTDG + +
Sbjct: 1358 NSVYGYLAFPRARFYSRECAEIVTYLGRKYILETVKEAEKFGFKVLYIDTDGFYAIWKEK 1417
Query: 842 FP-ENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEF 900
E K + + + P M E
Sbjct: 1418 ISKEELIKKAMEFVEYINSKLPGTM---------------------------------EL 1444
Query: 901 EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFD 960
E +G +K I + KKRYA+ +++G + +KG E RR + K+ Q + +
Sbjct: 1445 EFEGYFKRGIF--------VTKKRYALIDENGRVT-VKGLEFVRRDWSNIAKITQRRVLE 1495
Query: 961 KFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDY--ISESSTMSKSLADYGEQ 1018
L +IE+ + V D + K I +LI Y +++ K+ A + E
Sbjct: 1496 ALLVEGSIEKAKKIIQDVIK------DLREKKIKKEDLIIYTQLTKDPKEYKTTAPHVEI 1549
Query: 1019 KSCAVTTARRL--SDFLGDTMVK 1039
+ +R+ D +G +VK
Sbjct: 1550 AKKLMREGKRIKVGDIIGYIIVK 1572
>sp|P61876|DPOL_PYRWO DNA polymerase OS=Pyrococcus woesei GN=pol PE=1 SV=1
Length = 775
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 175/387 (45%), Gaps = 66/387 (17%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
+VD+ EYD+P+ R+ ID + + + E+ + AFDIET
Sbjct: 105 AVVDIFEYDIPFAKRYLIDKGL--------------------IPMEGEEELKILAFDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY + + +I + DL Y V V+
Sbjct: 145 --LYHEGEEFGKGPIIMISYADENEAKVITWKNI------DLPY-----------VEVVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS-----EELGFQCDK 363
+E E+++ + ++E P I VTYNGD FD+P+L RA G K++ E Q
Sbjct: 186 SEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLTIGRDGSEPKMQRIG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
+ K H D + + R LP + L+AV +A G +V +++ + + E
Sbjct: 246 DMTAVEVKGRIHFDLYHVITRTINLP--TYTLEAVYEAIFGKPKEKVYADEIAKAWESGE 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA ATY L ++ P L+ ++ +V R +G L E L+ +AY
Sbjct: 304 NLERVAKYSMEDAKATYELGKEFL-PMEIQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFK-LDPSAYEQL 540
+ N + PNK E+ Y+ L ES Y GG V+ E G++ + + F+ L PS +
Sbjct: 363 ERNEVAPNKPS---EEEYQRRLRES--YTGGFVKEPEKGLWENIVYLDFRALYPSII--I 415
Query: 541 LNNLDRDLQYAIKVEGKMDLESVSNYD 567
+N+ D ++LE NYD
Sbjct: 416 THNVSPDT---------LNLEGCKNYD 433
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 95/226 (42%), Gaps = 46/226 (20%)
Query: 760 KIQEAQDMV--VLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNA- 816
K++E QD + +L D Q A K + NSFYGY ARWY E A VT G K I+
Sbjct: 467 KMKETQDPIEKILLDYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVW 526
Query: 817 RLLIEKIG-KPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNT 875
+ L EK G K L +DTDG++ +PG E K + K + P ++
Sbjct: 527 KELEEKFGFKVLYIDTDGLYATIPGGESEEIKKKALEFVKYINSKLPGLL---------- 576
Query: 876 NDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLA 935
E E +G YK + KKRYAV +++G +
Sbjct: 577 -----------------------ELEYEGFYKRGFF--------VTKKRYAVIDEEGKVI 605
Query: 936 ELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANR 981
+G EI RR ++ K QA + + L +EE V V +
Sbjct: 606 -TRGLEIVRRDWSEIAKETQARVLETILKHGDVEEAVRIVKEVIQK 650
>sp|P61875|DPOL_PYRFU DNA polymerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638
/ JCM 8422 / Vc1) GN=pol PE=1 SV=1
Length = 775
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 175/387 (45%), Gaps = 66/387 (17%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
+VD+ EYD+P+ R+ ID + + + E+ + AFDIET
Sbjct: 105 AVVDIFEYDIPFAKRYLIDKGL--------------------IPMEGEEELKILAFDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY + + +I + DL Y V V+
Sbjct: 145 --LYHEGEEFGKGPIIMISYADENEAKVITWKNI------DLPY-----------VEVVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS-----EELGFQCDK 363
+E E+++ + ++E P I VTYNGD FD+P+L RA G K++ E Q
Sbjct: 186 SEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLTIGRDGSEPKMQRIG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
+ K H D + + R LP + L+AV +A G +V +++ + + E
Sbjct: 246 DMTAVEVKGRIHFDLYHVITRTINLP--TYTLEAVYEAIFGKPKEKVYADEIAKAWESGE 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA ATY L ++ P L+ ++ +V R +G L E L+ +AY
Sbjct: 304 NLERVAKYSMEDAKATYELGKEFL-PMEIQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFK-LDPSAYEQL 540
+ N + PNK E+ Y+ L ES Y GG V+ E G++ + + F+ L PS +
Sbjct: 363 ERNEVAPNKPS---EEEYQRRLRES--YTGGFVKEPEKGLWENIVYLDFRALYPSII--I 415
Query: 541 LNNLDRDLQYAIKVEGKMDLESVSNYD 567
+N+ D ++LE NYD
Sbjct: 416 THNVSPDT---------LNLEGCKNYD 433
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 95/226 (42%), Gaps = 46/226 (20%)
Query: 760 KIQEAQDMV--VLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNA- 816
K++E QD + +L D Q A K + NSFYGY ARWY E A VT G K I+
Sbjct: 467 KMKETQDPIEKILLDYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVW 526
Query: 817 RLLIEKIG-KPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNT 875
+ L EK G K L +DTDG++ +PG E K + K + P ++
Sbjct: 527 KELEEKFGFKVLYIDTDGLYATIPGGESEEIKKKALEFVKYINSKLPGLL---------- 576
Query: 876 NDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLA 935
E E +G YK + KKRYAV +++G +
Sbjct: 577 -----------------------ELEYEGFYKRGFF--------VTKKRYAVIDEEGKVI 605
Query: 936 ELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANR 981
+G EI RR ++ K QA + + L +EE V V +
Sbjct: 606 -TRGLEIVRRDWSEIAKETQARVLETILKHGDVEEAVRIVKEVIQK 650
>sp|P30317|DPOL_THELI DNA polymerase OS=Thermococcus litoralis GN=pol PE=1 SV=1
Length = 1702
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 166/374 (44%), Gaps = 68/374 (18%)
Query: 175 LTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLL 234
+ GK + P +VD+ EYD+P+ R+ ID + + +
Sbjct: 96 MRGKIREHP-----AVVDIYEYDIPFAKRYLIDKGL--------------------IPME 130
Query: 235 QRAEVHVCAFDIETTKLPLKFPDAD---YDIIMMISYMLDGQGYLIINRECVGEDIEDLE 291
E+ + AFDIET + + D I+MISY + + +I + DL
Sbjct: 131 GDEELKLLAFDIETF-----YHEGDEFGKGEIIMISYADEEEARVITWKNI------DLP 179
Query: 292 YTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGF 351
Y V V+NE E+++ + ++E P + +TYNGD FD P+L RA G
Sbjct: 180 Y-----------VDVVSNEREMIKRFVQVVKEKDPDVIITYNGDNFDLPYLIKRAEKLGV 228
Query: 352 KM-------SEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLG 404
++ E Q + K H D F V+R LP + L+AV +A LG
Sbjct: 229 RLVLGRDKEHPEPKIQRMGDSFAVEIKGRIHFDLFPVVRRTINLP--TYTLEAVYEAVLG 286
Query: 405 YDPLEVNPEDMVRF--AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDE 462
++ E++ +E + +A YS+ DA ATY L + P LA +I S +
Sbjct: 287 KTKSKLGAEEIAAIWETEESMKKLAQYSMEDARATYELGKEF-FPMEAELAKLIGQSVWD 345
Query: 463 VLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVF 522
V R +G L E L+ AY N + PNK D E++ R TY+GG+V+ E G++
Sbjct: 346 VSRSSTGNLVEWYLLRVAYARNELAPNK--PDEEEYKRRL---RTTYLGGYVKEPEKGLW 400
Query: 523 RSDLPTSFK-LDPS 535
+ + F+ L PS
Sbjct: 401 ENIIYLDFRSLYPS 414
>sp|O33845|DPOL_THEAG DNA polymerase OS=Thermococcus aggregans GN=pol PE=3 SV=1
Length = 1829
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 166/377 (44%), Gaps = 75/377 (19%)
Query: 175 LTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLL 234
L GK + P ++D+ EYD+P+ R+ ID + + +
Sbjct: 96 LRGKIREHP-----AVIDIYEYDIPFAKRYLIDKGL--------------------IPME 130
Query: 235 QRAEVHVCAFDIETTKLPLKFPDAD---YDIIMMISYMLDGQGYLIINRECVGEDIEDLE 291
E+ + AFDIET + + D I+MISY + + +I + DL
Sbjct: 131 GDEELKLMAFDIETF-----YHEGDEFGKGEIIMISYADEEEARVITWKNI------DLP 179
Query: 292 YTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGF 351
Y V V+NE E+++ + ++E P + +TYNGD FD P+L RA
Sbjct: 180 Y-----------VDVVSNEREMIKRFVQIVREKDPDVLITYNGDNFDLPYLIKRAE---- 224
Query: 352 KMSEELGFQCDKNQGECR-----------AKFACHLDCFAWVKRDSYLPQGSQGLKAVTK 400
K+ L DK E + K H D F V+R LP + L+AV +
Sbjct: 225 KLGVTLLLGRDKEHPEPKIHRMGDSFAVEIKGRIHFDLFPVVRRTINLP--TYTLEAVYE 282
Query: 401 AKLGYDPLEVNPEDMVRF--AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPM 458
A LG ++ E++ +E + +A YS+ DA ATY L + P LA +I
Sbjct: 283 AVLGKTKSKLGAEEIAAIWETEESMKKLAQYSMEDARATYELGKEFF-PMEAELAKLIGQ 341
Query: 459 SPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLE 518
S +V R +G L E L+ AY+ N + PNK E+ YR L TY+GG+V+ E
Sbjct: 342 SVWDVSRSSTGNLVEWYLLRVAYERNELAPNKPD---EEEYRRRL--RTTYLGGYVKEPE 396
Query: 519 SGVFRSDLPTSFKLDPS 535
G++ + F+ P+
Sbjct: 397 RGLWENIAYLDFRCHPA 413
>sp|Q7SIG7|DPOL_DESST DNA polymerase OS=Desulfurococcus sp. (strain Tok) GN=pol PE=1 SV=1
Length = 773
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 161/355 (45%), Gaps = 56/355 (15%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
+VD+ EYD+P+ R+ ID + + + E+ + AFDIET
Sbjct: 105 AVVDIYEYDIPFAKRYLIDRGL--------------------IPMEGDEELRMLAFDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY D +G +I + + DL Y V +V+
Sbjct: 145 --LYHEGEEFGEGPILMISYA-DEEGARVITWKNI-----DLPY-----------VESVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKM-----SEELGFQCDK 363
E E+++ + +QE P + +TYNGD FD+ +L+ R+ G K E Q
Sbjct: 186 TEKEMIKRFLKVIQEKDPDVLITYNGDNFDFAYLKKRSEMLGVKFILGRDGSEPKIQRMG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
++ K H D + ++R LP + L+ V + G +V E++ R + E
Sbjct: 246 DRFAVEVKGRIHFDLYPVIRRTINLP--TYTLETVYEPVFGQPKEKVYAEEIARAWESGE 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA ATY L + P L+ ++ S +V R +G L E L+ +AY
Sbjct: 304 GLERVARYSMEDAKATYELGKEFF-PMEAQLSRLVGQSLWDVSRSSTGNLVEWFLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFK-LDPS 535
+ N + PNK R +E+Y GG+V+ E G++ + + +K L PS
Sbjct: 363 ERNDVAPNKPDE------RELARRTESYAGGYVKEPEKGLWENIVYLDYKSLYPS 411
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 116/302 (38%), Gaps = 60/302 (19%)
Query: 770 LYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNA-RLLIEKIG-KPL 827
L D Q A K + NS+YGY ARWY E A VT G + I+ R + EK G K L
Sbjct: 478 LLDYRQRAIKILANSYYGYYAYANARWYCRECAESVTAWGRQYIETTMREIEEKFGFKVL 537
Query: 828 ELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVS 887
DTDG + +PG+ E K K+ + P ++
Sbjct: 538 YADTDGFFATIPGADAETVKNKAKEFLNYINPRLPGLL---------------------- 575
Query: 888 KTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGE 947
E E +G Y+ + KK+YAV +++ + +G EI RR
Sbjct: 576 -----------ELEYEGFYRRGFF--------VTKKKYAVIDEEDKIT-TRGLEIVRRDW 615
Query: 948 LKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESST 1007
++ K QA + + L +EE V V + ++ +L+ Y
Sbjct: 616 SEIAKETQARVLEAILKHGDVEEAVRIVKEVTEKL------SRHEVPPEKLVIY----EQ 665
Query: 1008 MSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAI 1067
+++ L Y V A+RL+ + G YIV P V +RA+P
Sbjct: 666 ITRDLRSY-RATGPHVAVAKRLA---ARGIKIRPGTVISYIVLKGPGR--VGDRAIPFDE 719
Query: 1068 FE 1069
F+
Sbjct: 720 FD 721
>sp|Q9HH05|DPOL_THEHY DNA polymerase (Fragment) OS=Thermococcus hydrothermalis GN=pol
PE=1 SV=1
Length = 1668
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 152/341 (44%), Gaps = 55/341 (16%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
+VD+ EYD+P+ R+ ID + + + E+ + +FDIET
Sbjct: 72 AVVDIYEYDIPFAKRYLIDKGL--------------------IPMEGDEELKMMSFDIET 111
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY +G+ +I ++ DL Y V V+
Sbjct: 112 --LYHEGEEFGTGPILMISYADEGEARVITWKKI------DLPY-----------VEVVS 152
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS-----EELGFQCDK 363
E E+++ + ++E P + +TYNGD FD+ +L+ R G K + E Q
Sbjct: 153 TEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRCEKIGIKFTLRRDGSEPKIQRMG 212
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
++ K H D + ++R LP + L+AV +A G +V PE++ E
Sbjct: 213 DRFAVEVKGRIHFDLYPVIRRTINLP--TYTLEAVYEAVFGTPKEKVYPEEITTAWETGE 270
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA TY L + P L+ +I S +V R +G L E L+ +AY
Sbjct: 271 GLERVARYSMEDAKVTYELGREFF-PMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAY 329
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVF 522
+ N I PNK D + R Y GG+V+ E G++
Sbjct: 330 ERNEIAPNK--PDERELARRR----GGYAGGYVKEPERGLW 364
>sp|P77933|DPOL_PYRKO DNA polymerase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=pol PE=1 SV=3
Length = 1671
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 66/388 (17%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
++D+ EYD+P+ R+ ID + V + E+ + AFDIET
Sbjct: 105 AVIDIYEYDIPFAKRYLIDKGL--------------------VPMEGDEELKMLAFDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY D +G +I + V DL Y V V+
Sbjct: 145 --LYHEGEEFAEGPILMISYA-DEEGARVITWKNV-----DLPY-----------VDVVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS-----EELGFQCDK 363
E E+++ + ++E P + +TYNGD FD+ +L+ R G + E Q
Sbjct: 186 TEREMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGINFALGRDGSEPKIQRMG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
++ K H D + ++R LP + L+AV +A G +V E++ E
Sbjct: 246 DRFAVEVKGRIHFDLYPVIRRTINLP--TYTLEAVYEAVFGQPKEKVYAEEITTAWETGE 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA TY L ++ P L+ +I S +V R +G L E L+ +AY
Sbjct: 304 NLERVARYSMEDAKVTYELGKEFL-PMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLL 541
+ N + PNK D ++ R ++Y GG+V+ E G++ + + F+ P+
Sbjct: 363 ERNELAPNK--PDEKELARRR----QSYEGGYVKEPERGLWENIVYLDFRCHPA------ 410
Query: 542 NNLDRDLQYAIKVEGKMDLESVSNYDEV 569
D + +K +G +++ V D V
Sbjct: 411 -----DTKVVVKGKGIINISEVQEGDYV 433
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 44/188 (23%)
Query: 796 WYSMEMAGVVTYTGAK-IIQNARLLIEKIG-KPLELDTDGIWCVLPGSFPENFTFKTKDL 853
WY E A VT G + I + + EK G K + DTDG + +PG+ E K +
Sbjct: 1401 WYCKECAESVTAWGREYITMTIKEIEEKYGFKVIYSDTDGFFATIPGADAETVKKKAMEF 1460
Query: 854 KKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPA 913
K + P ++E E +G YK
Sbjct: 1461 LKYINAKLP---------------------------------GALELEYEGFYKRGFF-- 1485
Query: 914 SKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYS 973
+ KK+YAV +++G + +G EI RR ++ K QA + + L +E+
Sbjct: 1486 ------VTKKKYAVIDEEGKIT-TRGLEIVRRDWSEIAKETQARVLEALLKDGDVEKAVR 1538
Query: 974 AVAAVANR 981
V V +
Sbjct: 1539 IVKEVTEK 1546
>sp|P56689|DPOL_THEGO DNA polymerase OS=Thermococcus gorgonarius GN=pol PE=1 SV=1
Length = 773
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 159/355 (44%), Gaps = 56/355 (15%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
+VD+ EYD+P+ R+ ID + + + E+ + AFDIET
Sbjct: 105 AVVDIYEYDIPFAKRYLIDKGL--------------------IPMEGDEELKMLAFDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY D +G +I + + DL Y V V+
Sbjct: 145 --LYHEGEEFAEGPILMISYA-DEEGARVITWKNI-----DLPY-----------VDVVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKM-----SEELGFQCDK 363
E E+++ + ++E P + +TYNGD FD+ +L+ R+ G K E Q
Sbjct: 186 TEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKFILGREGSEPKIQRMG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
++ K H D + ++R LP + L+AV +A G +V E++ + E
Sbjct: 246 DRFAVEVKGRIHFDLYPVIRRTINLP--TYTLEAVYEAIFGQPKEKVYAEEIAQAWETGE 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA TY L + P L+ ++ S +V R +G L E L+ +AY
Sbjct: 304 GLERVARYSMEDAKVTYELGKEF-FPMEAQLSRLVGQSLWDVSRSSTGNLVEWFLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFK-LDPS 535
+ N + PNK R E+Y GG+V+ E G++ + + F+ L PS
Sbjct: 363 ERNELAPNKPDE------RELARRRESYAGGYVKEPERGLWENIVYLDFRSLYPS 411
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 120/303 (39%), Gaps = 62/303 (20%)
Query: 770 LYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNA-RLLIEKIG-KPL 827
L D Q A K + NSFYGY ARWY E A VT G + I+ R + EK G K L
Sbjct: 478 LLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFGFKVL 537
Query: 828 ELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVS 887
DTDG + +PG+ E K K+ + P ++
Sbjct: 538 YADTDGFFATIPGADAETVKKKAKEFLDYINAKLPGLL---------------------- 575
Query: 888 KTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGE 947
E E +G YK + KK+YAV +++ + +G EI RR
Sbjct: 576 -----------ELEYEGFYKRGFF--------VTKKKYAVIDEEDKIT-TRGLEIVRRDW 615
Query: 948 LKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESST 1007
++ K QA + + L +EE V V + ++ +L+ Y
Sbjct: 616 SEIAKETQARVLEAILKHGDVEEAVRIVKEVTEKL------SKYEVPPEKLVIY----EQ 665
Query: 1008 MSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTP-VSERAVPVA 1066
+++ L DY + V A+RL+ + G YIV +G+ + +RA+P
Sbjct: 666 ITRDLKDY-KATGPHVAVAKRLA---ARGIKIRPGTVISYIVL---KGSGRIGDRAIPFD 718
Query: 1067 IFE 1069
F+
Sbjct: 719 EFD 721
>sp|O59610|DPOL_PYRHO DNA polymerase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pol PE=3 SV=1
Length = 1235
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 158/355 (44%), Gaps = 55/355 (15%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
+VD+ EYD+P+ R+ ID + + ++ A DIET
Sbjct: 105 AVVDIFEYDIPFAKRYLIDKGL--------------------TPMEGNEKLTFLAVDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + ++MISY D +G +I + + DL Y V V+
Sbjct: 145 --LYHEGEEFGKGPVIMISYA-DEEGAKVITWKKI-----DLPY-----------VEVVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKM-----SEELGFQCDK 363
+E E+++ ++E P + +TYNGD FD+P+L RA G K+ + E Q
Sbjct: 186 SEREMIKRLIRVIKEKDPDVIITYNGDNFDFPYLLKRAEKLGIKLLLGRDNSEPKMQKMG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
+ K H D F ++R LP + L+AV +A G +V +++ + E
Sbjct: 246 DSLAVEIKGRIHFDLFPVIRRTINLP--TYTLEAVYEAIFGKPKEKVYADEIAKAWETGE 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA TY L + P LA ++ +V R +G L E L+ +AY
Sbjct: 304 GLERVAKYSMEDAKVTYELGREF-FPMEAQLARLVGQPVWDVSRSSTGNLVEWFLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFK-LDPS 535
+ N + PNK EK Y L ES Y GG+V+ E G++ + F+ L PS
Sbjct: 363 ERNELAPNKPD---EKEYERRLRES--YEGGYVKEPEKGLWEGIVSLDFRSLYPS 412
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 130/312 (41%), Gaps = 63/312 (20%)
Query: 759 IKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARL 818
+ +++ ++ +V + L AH NS+YGY ARWY E A VT G + I R
Sbjct: 933 LSVEDNENFLVGF-GLLYAH----NSYYGYYGYAKARWYCKECAESVTAWGRQYIDLVRR 987
Query: 819 LIEKIG-KPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTND 877
+E G K L +DTDG++ +PG KD + +V R
Sbjct: 988 ELEARGFKVLYIDTDGLYATIPG---------VKDWE--------------EVKRRALE- 1023
Query: 878 QYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAEL 937
VD ++ + +E E +G Y + KK+YA+ +++G +
Sbjct: 1024 ----FVDYIN----SKLPGVLELEYEGFYARGFF--------VTKKKYALIDEEGKIV-T 1066
Query: 938 KGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSE 997
+G EI RR ++ K QA + + L +EE V V + + ++ +
Sbjct: 1067 RGLEIVRRDWSEIAKETQARVLEAILKHGNVEEAVKIVKDVTEKLTNY------EVPPEK 1120
Query: 998 LIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTP 1057
L+ Y +++ + +Y + V A+RL + + G+ YIV P
Sbjct: 1121 LVIY----EQITRPINEY-KAIGPHVAVAKRL---MARGIKVKPGMVIGYIVLR--GDGP 1170
Query: 1058 VSERAVPVAIFE 1069
+S+RA+ + F+
Sbjct: 1171 ISKRAISIEEFD 1182
>sp|Q56366|DPOL_THES9 DNA polymerase OS=Thermococcus sp. (strain 9oN-7) GN=pol PE=1 SV=1
Length = 775
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 160/355 (45%), Gaps = 56/355 (15%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
+VD+ EYD+P+ R+ ID + + + E+ + AFDIET
Sbjct: 105 AVVDIYEYDIPFAKRYLIDKGL--------------------IPMEGDEELTMLAFDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY DG +I + + DL Y V V+
Sbjct: 145 --LYHEGEEFGTGPILMISYA-DGSEARVITWKKI-----DLPY-----------VDVVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS-----EELGFQCDK 363
E E+++ + ++E P + +TYNGD FD+ +L+ R G K + E Q
Sbjct: 186 TEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
++ K H D + ++R LP + L+AV +A G +V E++ + + E
Sbjct: 246 DRFAVEVKGRIHFDLYPVIRRTINLP--TYTLEAVYEAVFGKPKEKVYAEEIAQAWESGE 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA TY L + P L+ +I S +V R +G L E L+ +AY
Sbjct: 304 GLERVARYSMEDAKVTYELGREFF-PMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFK-LDPS 535
K N + PNK P++ R Y GG+V+ E G++ + + F+ L PS
Sbjct: 363 KRNELAPNK----PDE--RELARRRGGYAGGYVKEPERGLWDNIVYLDFRSLYPS 411
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 86/214 (40%), Gaps = 44/214 (20%)
Query: 770 LYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNA-RLLIEKIG-KPL 827
L D Q A K + NSFYGY ARWY E A VT G + I+ R L EK G K L
Sbjct: 478 LLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVL 537
Query: 828 ELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVS 887
DTDG+ +PG+ E K K+ K + P ++
Sbjct: 538 YADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLL---------------------- 575
Query: 888 KTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGE 947
E E +G Y + KK+YAV +++G + +G EI RR
Sbjct: 576 -----------ELEYEGFYVRGFF--------VTKKKYAVIDEEGKIT-TRGLEIVRRDW 615
Query: 948 LKLIKVFQAELFDKFLHGSTIEECYSAVAAVANR 981
++ K QA + + L +EE V V +
Sbjct: 616 SEIAKETQARVLEAILKHGDVEEAVRIVKEVTEK 649
>sp|P74918|DPOL_THEFM DNA polymerase OS=Thermococcus fumicolans GN=pol PE=1 SV=1
Length = 1523
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 170/393 (43%), Gaps = 62/393 (15%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
+VD+ EYD+P+ R+ ID + + + E+ + AFDIET
Sbjct: 105 AVVDIYEYDIPFAKRYLIDKGL--------------------IPMEGDEELKMLAFDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY D +G +I + + DL Y V V+
Sbjct: 145 --LYHEGEEFAEGPILMISYA-DEEGARVITWKKI-----DLPY-----------VDVVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKM-----SEELGFQCDK 363
E E+++ + ++E P + +TYNGD FD+ +L+ R+ G K E Q
Sbjct: 186 TEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKFILGRDGSEPKIQRMG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
++ K H D + ++ LP + L+AV +A G +V E++ + E
Sbjct: 246 DRFAVEVKGRIHFDLYPVIRHTINLP--TYTLEAVYEAIFGQPKEKVYAEEIAQAWETGE 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA TY L + P L+ ++ S +V R +G L E L+ +AY
Sbjct: 304 GLERVARYSMEDAKVTYELGREFF-PMEAQLSRLVGQSFWDVSRSSTGNLVEWYLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLL 541
+ N + PNK + R Y GG+V+ E G++ + F+ P+ + ++
Sbjct: 363 ERNELAPNKPSGRELERRRG------GYAGGYVKEPERGLWENIAYLDFRCHPADTKVIV 416
Query: 542 NNLD-------RDLQYAIKVEGKMDLESVSNYD 567
R+ Y + ++G ++ V YD
Sbjct: 417 KGKGVVNISEVREGDYVLGIDGWQKVQRVWEYD 449
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 770 LYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNA-RLLIEKIG 824
L D Q A K + NSFYGY ARWY E A VT G + I+ R + EK G
Sbjct: 838 LLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTMREIEEKFG 893
>sp|Q9HH84|DPOL_THEG8 DNA polymerase OS=Thermococcus sp. (strain GE8) GN=pol PE=3 SV=1
Length = 1699
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 56/355 (15%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
++D+ EYD+P+ R+ ID + + + ++ + AFDIET
Sbjct: 105 AVIDIYEYDIPFAKRYLIDKGL--------------------IPMEGDEKLKMLAFDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY D +G +I + V DL Y V V+
Sbjct: 145 --LYHEGEEFAEGPILMISYA-DEEGARVITWKKV-----DLPY-----------VDVVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKM-----SEELGFQCDK 363
E E+++ + ++E P + +TYNGD FD+ +L+ R+ G K E Q
Sbjct: 186 TEKEMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKRRSEKLGVKFILGRDGSEPKIQRMG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
++ K H D + ++R LP + L+AV +A G +V E++ E
Sbjct: 246 DRFAVEVKGRIHFDLYPVIRRTINLP--TYTLEAVYEAIFGKPKEKVYAEEIATAWETGE 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA T+ L + P L+ +I S +V R +G L E L+ +AY
Sbjct: 304 GLERVARYSMEDAKVTFELGKEFF-PMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFK-LDPS 535
+ N + PNK D + R ++Y GG+V+ E G++ + + F+ L PS
Sbjct: 363 ERNELAPNK--PDERELARRR----QSYAGGYVKEPERGLWNNIVYLDFRSLYPS 411
>sp|Q9HH06|DPOL_PYRGL DNA polymerase OS=Pyrococcus glycovorans GN=pol PE=3 SV=1
Length = 775
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 198/492 (40%), Gaps = 102/492 (20%)
Query: 65 CIDLYFVSQDG-----------STFKSKY--KFRPYFYAATKEKMEMDVEAYLRRRYESQ 111
+D ++++DG FK +Y FRPY YA K+ ++D + +
Sbjct: 2 ILDADYITEDGKPIIRIFKKENGEFKVEYDRNFRPYIYALLKDDSQIDEVKKITAERHGK 61
Query: 112 IADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAY 171
I I +EK +K G K+ F+ Q + ++ +
Sbjct: 62 IVRIVDVEK----VKKKFLGRPIEVWKLYFEHPQDVPAIRDKI----------------- 100
Query: 172 ESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRV 231
RE +VD+ EYD+P+ R+ ID + +
Sbjct: 101 -------REH------PAVVDIFEYDIPFAKRYLIDKGL--------------------I 127
Query: 232 DLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLE 291
+ E+ + AFDIET L + + I+MISY D +G +I + V DL
Sbjct: 128 PMEGDEELKLLAFDIET--LYHEGEEFAKGPIIMISYA-DEEGAKVITWKKV-----DLP 179
Query: 292 YTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGF 351
Y V V++E E+++ + ++E P + +TYNGD FD P+L RA G
Sbjct: 180 Y-----------VEVVSSEREMIKRFLKVIREKDPDVIITYNGDSFDLPYLVKRAEKLGI 228
Query: 352 KM-----SEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYD 406
K+ E Q + K H D + ++R LP + L+AV +A G
Sbjct: 229 KLPLGRDGSEPKMQRLGDMTAVEIKGRIHFDLYHVIRRTINLP--TYTLEAVYEAIFGKP 286
Query: 407 PLEVNPEDMVRF--AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVL 464
+V ++ + + +A YS+ DA TY L + P L+ ++ +V
Sbjct: 287 KEKVYAHEIAEAWETGKGLERVAKYSMEDAKVTYELGREFF-PMEAQLSRLVGQPLWDVS 345
Query: 465 RKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRS 524
R +G L E L+ +AY+ N + PNK E+Y GG+V+ E G++
Sbjct: 346 RSSTGNLVEWYLLRKAYERNELAPNKPDER-----EYERRLRESYAGGYVKEPEKGLWEG 400
Query: 525 DLPTSFK-LDPS 535
+ F+ L PS
Sbjct: 401 LVSLDFRSLYPS 412
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 121/296 (40%), Gaps = 60/296 (20%)
Query: 770 LYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARL-LIEKIG-KPL 827
+ D Q A K + NS+YGY ARWY E A VT G + I+ R L EK G K L
Sbjct: 479 MLDYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFGFKVL 538
Query: 828 ELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVS 887
+DTDG++ +PG+ PE K + + + P ++
Sbjct: 539 YIDTDGLYATIPGAKPEEIKRKALEFVEYINAKLPGLL---------------------- 576
Query: 888 KTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGE 947
E E +G Y + KK+YA+ +++G + +G EI RR
Sbjct: 577 -----------ELEYEGFYVRGFF--------VTKKKYALIDEEGKII-TRGLEIVRRDW 616
Query: 948 LKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESST 1007
++ K QA++ + L +EE V V + +I +L+ Y
Sbjct: 617 SEIAKETQAKVLEAILKHGNVEEAVKIVKEVTEKL------SKYEIPPEKLVIY----EQ 666
Query: 1008 MSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAV 1063
+++ L +Y + V A+RL+ + G+ YIV P+S+RA+
Sbjct: 667 ITRPLHEY-KAIGPHVAVAKRLA---ARGVKVRPGMVIGYIVLR--GDGPISKRAI 716
>sp|P0CL76|DPOL_PYRAY DNA polymerase 1 OS=Pyrococcus abyssi GN=polI PE=1 SV=1
Length = 771
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 118/492 (23%), Positives = 198/492 (40%), Gaps = 102/492 (20%)
Query: 65 CIDLYFVSQDG-----------STFKSKY--KFRPYFYAATKEKMEMDVEAYLRRRYESQ 111
ID ++++DG FK +Y FRPY YA K+ +D + +
Sbjct: 2 IIDADYITEDGKPIIRIFKKEKGEFKVEYDRTFRPYIYALLKDDSAIDEVKKITAERHGK 61
Query: 112 IADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAY 171
I I +EK + K +L + + ++ +D+ + E+ +
Sbjct: 62 IVRITEVEK-----------VQKKFLGRPIEVWKLYLEHPQDVPAIREKIR--------- 101
Query: 172 ESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRV 231
+ P +VD+ EYD+P+ R+ ID +
Sbjct: 102 ---------EHP-----AVVDIFEYDIPFAKRYLIDKGL--------------------T 127
Query: 232 DLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLE 291
+ E+ A DIET L + + I+MISY D +G +I + + DL
Sbjct: 128 PMEGNEELTFLAVDIET--LYHEGEEFGKGPIIMISYA-DEEGAKVITWKSI-----DLP 179
Query: 292 YTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGF 351
Y V V++E E+++ ++E P + +TYNGD FD+P+L RA G
Sbjct: 180 Y-----------VEVVSSEREMIKRLVKVIREKDPDVIITYNGDNFDFPYLLKRAEKLGI 228
Query: 352 KM-----SEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYD 406
K+ + E Q + K H D F ++R LP + L+AV +A G
Sbjct: 229 KLPLGRDNSEPKMQRMGDSLAVEIKGRIHFDLFPVIRRTINLP--TYTLEAVYEAIFGKS 286
Query: 407 PLEVNPEDMVRF--AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVL 464
+V ++ + + +A YS+ DA T+ L + P LA ++ +V
Sbjct: 287 KEKVYAHEIAEAWETGKGLERVAKYSMEDAKVTFELGKEF-FPMEAQLARLVGQPVWDVS 345
Query: 465 RKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRS 524
R +G L E L+ +AY+ N + PNK E+Y GG+V+ E G++
Sbjct: 346 RSSTGNLVEWFLLRKAYERNELAPNKPDER-----EYERRLRESYEGGYVKEPEKGLWEG 400
Query: 525 DLPTSFK-LDPS 535
+ F+ L PS
Sbjct: 401 IVSLDFRSLYPS 412
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 129/313 (41%), Gaps = 61/313 (19%)
Query: 760 KIQEAQDMV--VLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNAR 817
+++E++D V L D Q A K + NS+YGY ARWY E A VT G + I R
Sbjct: 467 RMKESKDPVEKKLLDYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGRQYIDLVR 526
Query: 818 LLIEKIG-KPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTN 876
+E G K L +DTDG++ +PG+ P K + + P ++
Sbjct: 527 RELESSGFKVLYIDTDGLYATIPGAKPNEIKEKALKFVEYINSKLPGLL----------- 575
Query: 877 DQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAE 936
E E +G Y + KK+YA+ +++G +
Sbjct: 576 ----------------------ELEYEGFYARGFF--------VTKKKYALIDEEGKIV- 604
Query: 937 LKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADS 996
+G EI RR ++ K QA++ + L ++E V V + +I
Sbjct: 605 TRGLEIVRRDWSEIAKETQAKVLEAILKHGNVDEAVKIVKEVTEKL------SKYEIPPE 658
Query: 997 ELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGT 1056
+L+ Y +++ L++Y + V A+RL+ + G+ YIV
Sbjct: 659 KLVIY----EQITRPLSEY-KAIGPHVAVAKRLA---AKGVKVKPGMVIGYIVLR--GDG 708
Query: 1057 PVSERAVPVAIFE 1069
P+S+RA+ + F+
Sbjct: 709 PISKRAIAIEEFD 721
>sp|P0CL77|DPOL_PYRAB DNA polymerase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=polI
PE=1 SV=1
Length = 771
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 118/492 (23%), Positives = 198/492 (40%), Gaps = 102/492 (20%)
Query: 65 CIDLYFVSQDG-----------STFKSKY--KFRPYFYAATKEKMEMDVEAYLRRRYESQ 111
ID ++++DG FK +Y FRPY YA K+ +D + +
Sbjct: 2 IIDADYITEDGKPIIRIFKKEKGEFKVEYDRTFRPYIYALLKDDSAIDEVKKITAERHGK 61
Query: 112 IADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAY 171
I I +EK + K +L + + ++ +D+ + E+ +
Sbjct: 62 IVRITEVEK-----------VQKKFLGRPIEVWKLYLEHPQDVPAIREKIR--------- 101
Query: 172 ESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRV 231
+ P +VD+ EYD+P+ R+ ID +
Sbjct: 102 ---------EHP-----AVVDIFEYDIPFAKRYLIDKGL--------------------T 127
Query: 232 DLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLE 291
+ E+ A DIET L + + I+MISY D +G +I + + DL
Sbjct: 128 PMEGNEELTFLAVDIET--LYHEGEEFGKGPIIMISYA-DEEGAKVITWKSI-----DLP 179
Query: 292 YTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGF 351
Y V V++E E+++ ++E P + +TYNGD FD+P+L RA G
Sbjct: 180 Y-----------VEVVSSEREMIKRLVKVIREKDPDVIITYNGDNFDFPYLLKRAEKLGI 228
Query: 352 KM-----SEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYD 406
K+ + E Q + K H D F ++R LP + L+AV +A G
Sbjct: 229 KLPLGRDNSEPKMQRMGDSLAVEIKGRIHFDLFPVIRRTINLP--TYTLEAVYEAIFGKS 286
Query: 407 PLEVNPEDMVRF--AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVL 464
+V ++ + + +A YS+ DA T+ L + P LA ++ +V
Sbjct: 287 KEKVYAHEIAEAWETGKGLERVAKYSMEDAKVTFELGKEF-FPMEAQLARLVGQPVWDVS 345
Query: 465 RKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRS 524
R +G L E L+ +AY+ N + PNK E+Y GG+V+ E G++
Sbjct: 346 RSSTGNLVEWFLLRKAYERNELAPNKPDER-----EYERRLRESYEGGYVKEPEKGLWEG 400
Query: 525 DLPTSFK-LDPS 535
+ F+ L PS
Sbjct: 401 IVSLDFRSLYPS 412
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 129/313 (41%), Gaps = 61/313 (19%)
Query: 760 KIQEAQDMV--VLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNAR 817
+++E++D V L D Q A K + NS+YGY ARWY E A VT G + I R
Sbjct: 467 RMKESKDPVEKKLLDYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGRQYIDLVR 526
Query: 818 LLIEKIG-KPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTN 876
+E G K L +DTDG++ +PG+ E K + + P ++
Sbjct: 527 RELESRGFKVLYIDTDGLYATIPGAKHEEIKEKALKFVEYINSKLPGLL----------- 575
Query: 877 DQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAE 936
E E +G Y + KK+YA+ +++G +
Sbjct: 576 ----------------------ELEYEGFYARGFF--------VTKKKYALIDEEGKIV- 604
Query: 937 LKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADS 996
+G EI RR ++ K QA++ + L ++E V V + +I
Sbjct: 605 TRGLEIVRRDWSEIAKETQAKVLEAILKHGNVDEAVKIVKEVTEKL------SKYEIPPE 658
Query: 997 ELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGT 1056
+L+ Y +++ L++Y + V A+RL+ + G+ YIV
Sbjct: 659 KLVIY----EQITRPLSEY-KAIGPHVAVAKRLA---AKGVKVKPGMVIGYIVLR--GDG 708
Query: 1057 PVSERAVPVAIFE 1069
P+S+RA+ + F+
Sbjct: 709 PISKRAIAIEEFD 721
>sp|Q51334|DPOL_PYRSD DNA polymerase OS=Pyrococcus sp. (strain GB-D) GN=pol PE=1 SV=1
Length = 1312
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 153/355 (43%), Gaps = 55/355 (15%)
Query: 189 CIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIET 248
++D+ EYD+P+ R+ ID + + + E+ + AFDIET
Sbjct: 105 AVIDIFEYDIPFAKRYLIDKGL--------------------IPMEGDEELKLLAFDIET 144
Query: 249 TKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVN 308
L + + I+MISY + + +I ++ DL Y V V+
Sbjct: 145 --LYHEGEEFAKGPIIMISYADEEEAKVITWKKI------DLPY-----------VEVVS 185
Query: 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKM-----SEELGFQCDK 363
+E E+++ + ++E P + +TYNGD FD P+L RA G K+ E Q
Sbjct: 186 SEREMIKRFLKVIREKDPDVIITYNGDSFDLPYLVKRAEKLGIKLPLGRDGSEPKMQRLG 245
Query: 364 NQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF--AKE 421
+ K H D + ++R LP + L+AV +A G +V ++ +
Sbjct: 246 DMTAVEIKGRIHFDLYHVIRRTINLP--TYTLEAVYEAIFGKPKEKVYAHEIAEAWETGK 303
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
+ +A YS+ DA TY L + P L+ ++ +V R +G L E L+ +AY
Sbjct: 304 GLERVAKYSMEDAKVTYELGREFF-PMEAQLSRLVGQPLWDVSRSSTGNLVEWYLLRKAY 362
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFK-LDPS 535
+ N + PNK E+Y GG+V+ E G++ + F+ L PS
Sbjct: 363 ERNELAPNKPDER-----EYERRLRESYAGGYVKEPEKGLWEGLVSLDFRSLYPS 412
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 44/201 (21%)
Query: 783 NSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARL-LIEKIG-KPLELDTDGIWCVLPG 840
NS+YGY ARWY E A VT G + I+ R L EK G K L +DTDG++ +PG
Sbjct: 1029 NSYYGYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFGFKVLYIDTDGLYATIPG 1088
Query: 841 SFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEF 900
+ PE K + + P ++ E
Sbjct: 1089 AKPEEIKKKALEFVDYINAKLPGLL---------------------------------EL 1115
Query: 901 EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFD 960
E +G Y + KK+YA+ +++G + +G EI RR ++ K QA++ +
Sbjct: 1116 EYEGFYVRGFF--------VTKKKYALIDEEGKII-TRGLEIVRRDWSEIAKETQAKVLE 1166
Query: 961 KFLHGSTIEECYSAVAAVANR 981
L +EE V V +
Sbjct: 1167 AILKHGNVEEAVKIVKEVTEK 1187
>sp|O29753|DPOL_ARCFU DNA polymerase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16
/ DSM 4304 / JCM 9628 / NBRC 100126) GN=pol PE=3 SV=1
Length = 781
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 150/364 (41%), Gaps = 43/364 (11%)
Query: 184 QDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLE-------KRVDLLQR 236
+D+L D+RE D+P+ R+ ID D+ C + G ++ +R+ ++
Sbjct: 100 RDYLSQFGDVREADIPFAYRYLIDKDLACMDGIAIEGEKQGGVIRSYKIEKVERIPRMEF 159
Query: 237 AEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKP 296
E+ + FD E P+ + D I++IS + +I+
Sbjct: 160 PELKMLVFDCEMLS-SFGMPEPEKDPIIVISVKTNDDDEIILT----------------- 201
Query: 297 EFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS-E 355
+E +++ + ++ P I V YN D FDWP+L RA +
Sbjct: 202 -----------GDERKIISDFVKLIKSYDPDIIVGYNQDAFDWPYLRKRAERWNIPLDVG 250
Query: 356 ELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLP-QGSQGLKAVTKAKLGYDPLEVNPED 414
G G + ++D + R S + + + + K+ + ++ +D
Sbjct: 251 RDGSNVVFRGGRPKITGRLNVDLYDIAMRISDIKIKKLENVAEFLGTKI--EIADIEAKD 308
Query: 415 MVRF-AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCE 473
+ R+ ++ + + + +Y+ DA+ TY L + P + L+ +I + D+V R G G +
Sbjct: 309 IYRYWSRGEKEKVLNYARQDAINTY-LIAKELLPMHYELSKMIRLPVDDVTRMGRGKQVD 367
Query: 474 MLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLD 533
LL+ +A K I PN + E + +LE E + +V CL+ + +F +
Sbjct: 368 WLLLSEAKKIGEIAPNPPEH-AESYEGAFVLEPERGLHENVACLDFASMYPSIMIAFNIS 426
Query: 534 PSAY 537
P Y
Sbjct: 427 PDTY 430
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 83/213 (38%), Gaps = 49/213 (23%)
Query: 770 LYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIG-KPLE 828
L D Q K + NSFYGY+ ARWY A T G I+ + + E +G K L
Sbjct: 484 LLDIKQQTLKVLTNSFYGYMGWNLARWYCHPCAEATTAWGRHFIRTSAKIAESMGFKVLY 543
Query: 829 LDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSK 888
DTD I+ G M DV R L+D +
Sbjct: 544 GDTDSIFVTKAG------------------------MTKEDVDR---------LIDKL-- 568
Query: 889 TYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGEL 948
H E I+ EVD Y A+ + KKRYA +DG L +KG E++R
Sbjct: 569 ----HEELPIQIEVDEYYSAIFF--------VEKKRYAGLTEDGRLV-VKGLEVRRGDWC 615
Query: 949 KLIKVFQAELFDKFLHGSTIEECYSAVAAVANR 981
+L K Q E+ + L E+ S V V R
Sbjct: 616 ELAKKVQREVIEVILKEKNPEKALSLVKDVILR 648
>sp|O27276|DPOL_METTH DNA polymerase OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=pol PE=3 SV=1
Length = 586
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 165/375 (44%), Gaps = 56/375 (14%)
Query: 187 LDCIVDLREYDVPYHIRFAIDNDVRC-------GQWYDVSISSTGPLLEKRVDLLQRAE- 238
L+ + D+RE+D+P++ R+ ID + G D + S T + + V++ R +
Sbjct: 104 LESVRDIREHDIPFYRRYLIDKSIVPMEELEFQGVEVDSAPSVTTDV--RTVEVTGRVQS 161
Query: 239 -------VHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLE 291
+ + +FDIE + P PD + D I+MI + GY + G+ ++ +E
Sbjct: 162 TGSGAHGLDILSFDIEV-RNPHGMPDPEKDEIVMIG-VAGNMGYESVI-STAGDHLDFVE 218
Query: 292 YTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGF 351
V +E ELL + + + KP I V YN D FD+P++ RAA G
Sbjct: 219 V--------------VEDERELLERFAEIVIDKKPDILVGYNSDNFDFPYITRRAAILGA 264
Query: 352 KMSEELGFQCDKNQGECRA-------KFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLG 404
++ +LG+ K + R K H+D + ++R Y+ L+ V + G
Sbjct: 265 EL--DLGWDGSKIRTMRRGFANATAIKGTVHVDLYPVMRR--YMNLDRYTLERVYQELFG 320
Query: 405 YDPLEVNPEDMVRF--AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDE 462
+ +++ + + + E + YS+ D VAT+ + + P L ++ +
Sbjct: 321 EEKIDLPGDRLWEYWDRDELRDELFRYSLDDVVATHRI-AEKILPLNLELTRLVGQPLFD 379
Query: 463 VLRKGSGTLCEMLLMVQAYKANVICPNK-HQSDPEKFYRNHLLESETYIGGHVECLESGV 521
+ R +G E L+ +AY+ + PNK QSD +GG+V+ E G+
Sbjct: 380 ISRMATGQQAEWFLVRKAYQYGELVPNKPSQSDFSS------RRGRRAVGGYVKEPEKGL 433
Query: 522 FRSDLPTSFK-LDPS 535
+ + F+ L PS
Sbjct: 434 HENIVQFDFRSLYPS 448
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 775 QLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIG-KPLELDTDG 833
Q A K + N+ YG RWYSME A +T G I+ E+ G + DTDG
Sbjct: 520 QEALKRLANTMYGVYGYSRFRWYSMECAEAITAWGRDYIKKTIKTAEEFGFHTVYADTDG 579
Query: 834 IWCVLPG 840
+ G
Sbjct: 580 FYATYRG 586
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 131/574 (22%), Positives = 222/574 (38%), Gaps = 104/574 (18%)
Query: 66 IDLYFVSQDG-STFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLD 124
I +Y + +DG S + + F PYFY + + D E ++ +E+L E+L+
Sbjct: 119 IRIYSLRKDGCSVLINVHNFFPYFYVEKPD--DFDNEDLIK---------LEMLMNENLN 167
Query: 125 LKNHLSGLHKSYLKISFDTVQQLM----DVKKDLLHVVERNQAKFDAAEAYESILTGKRE 180
L + K LKI + LM + KKD L + ++L K
Sbjct: 168 LNSQYKIYEKKILKIEIVKTESLMYFKKNGKKDFLKI---------------TVLLPKMV 212
Query: 181 QRPQDFLDCIVDLR---------EYDVPYHIRFAIDNDVRCGQWY--------------- 216
+ + + IV + E ++P+ +R+ ID+ + W
Sbjct: 213 PSLKKYFEGIVHVNNKSIGGIVYEANLPFILRYIIDHKITGSSWINCKKGHYYIRNKNKK 272
Query: 217 --------DVSISSTGPL-LEKRVDLLQRAEVHVCAFDIETTKLPLK-FPDADYDIIMMI 266
D+S P+ LE Q ++ + +FDIE KL K FP+A D I+ I
Sbjct: 273 ISNCTFEIDISYEHVEPITLENEYQ--QIPKLRILSFDIECIKLDGKGFPEAKNDPIIQI 330
Query: 267 SYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKP 326
S +L QG I N C LE P V N+E LL W + + P
Sbjct: 331 SSILYFQGEPIDN--CTKFIFTLLECASIPGSN----VIWFNDEKTLLEAWNEFIIRIDP 384
Query: 327 GIYVTYNGDYFDWPFLETRAAHHGFKMSEELG-----FQCDKNQGECRAKFACH----LD 377
YN FD P++ R K + LG K+ +F H ++
Sbjct: 385 DFLTGYNIINFDLPYILNRGTALNLKKLKFLGRIKNVASTVKDSSFSSKQFGTHETKEIN 444
Query: 378 CFAWVKRDSY-LPQGSQGLKAVTKAKLGYDPLEVNPED-----MVRFAKEKPQM---MAS 428
F ++ D Y L + LK+ T + ++ L+ ED M E P+ +A+
Sbjct: 445 IFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDVHYSIMNDLQNESPESRKRIAT 504
Query: 429 YSVSDAVATYYLY--MTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVI 486
Y + D V L + +++ ++ +A + +L +G L + + N +
Sbjct: 505 YCIKDGVLPLRLIDKLLFIYNYV-EMARVTGTPFVYLLTRGQQIKVTSQLYRKCKELNYV 563
Query: 487 CPNKHQ--SDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLL--N 542
P+ + + EK+ +LE G ++E + + F S P+ Y L+ N
Sbjct: 564 IPSTYMKVNTNEKYEGATVLEPIK--GYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSN 621
Query: 543 NLDRDLQY--AIKVEGKMDLESVSNYDEVKNAIM 574
+ DLQ ++GK +L+ V VK I+
Sbjct: 622 HEVSDLQNDDITTIQGKNNLKFVK--KNVKKGIL 653
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 36/200 (18%)
Query: 185 DFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSI-------SSTGPLLEKR----VDL 233
DF DC E ++ + IRF +D DV W ++ + S + PL E R VD+
Sbjct: 217 DFQDCRA--FENNIDFDIRFMVDTDVVGCNWIELPMGHWRIRNSHSKPLPESRCQIEVDV 274
Query: 234 L--------------QRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIIN 279
+ A + +FDIE FP+A D ++ I+ M+ QG
Sbjct: 275 AFDRFISHEPEGEWSKVAPFRILSFDIECAGRKGIFPEAKIDPVIQIANMVIRQG----E 330
Query: 280 RECVGEDIEDL-EYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFD 338
RE ++ L E P G +V + E ++L W A ++EV P I YN + FD
Sbjct: 331 REPFIRNVFTLNECAP---IIGS-QVLCHDKETQMLDKWSAFVREVDPDILTGYNINNFD 386
Query: 339 WPFLETRAAHHGFKMSEELG 358
+P+L RAAH + E LG
Sbjct: 387 FPYLLNRAAHLKVRNFEYLG 406
>sp|P52025|DPOL_METVO DNA polymerase OS=Methanococcus voltae GN=pol PE=3 SV=1
Length = 824
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 138/336 (41%), Gaps = 57/336 (16%)
Query: 195 EYDVPYHIRFAIDNDVRCGQWY--DVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLP 252
E+D+P+ R+ ID D+ Y D I ++ P E++ AFD+E
Sbjct: 141 EFDIPFLRRYMIDQDIVPSAKYSEDNKIDNSIP------------ELNCIAFDMEL--YC 186
Query: 253 LKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIE 312
K P+A D I+M++ +I ++ E+ EY ++ V +E E
Sbjct: 187 KKEPNAKKDPIIMVNLFSKDYQKVITYKK-----FENSEYNGCVDY--------VKDEKE 233
Query: 313 LLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGE----- 367
L++ +++ + TYNGD FD+P+L+ RA + EL F N +
Sbjct: 234 LIQKTIEILKQY--DVIYTYNGDNFDFPYLKKRANIYEI----ELDFDNASNSQQPQIIK 287
Query: 368 ---------CRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF 418
+ H+D + ++ L L+ V + + V+ D+ +
Sbjct: 288 ISKGGINRKSKIPGIIHIDLYPIARK--LLNLTKYKLENVVQELFKINKEAVDYGDIPKM 345
Query: 419 AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMV 478
+ + + Y+ DA+ TY + Y P + I+ + R S + E LL+
Sbjct: 346 WETEDTTLLRYAYEDALYTYKM-GNYFLPLEIMFSRIVNQPLYDTSRMNSSQMVEFLLLK 404
Query: 479 QAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHV 514
++++ N+I PN+ S YR S Y GG+V
Sbjct: 405 RSFEQNMISPNRPSSSS---YRERAKFS--YEGGYV 435
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 775 QLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIG-KPLELDTDG 833
Q + K + NS YGY+ ARWYS + A +VT G K IQ E+ G K + DTDG
Sbjct: 522 QKSIKVLANSHYGYLAFPMARWYSDKCAEMVTGLGRKYIQETIEKAEEFGFKVIYADTDG 581
Query: 834 IWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETH 893
+ + + D KL+ + P + + ++ L K
Sbjct: 582 FYAKWDYDKLQKGKKEENDKSDKLS-NLPKL----------SKEELIILTKKFLKGINEE 630
Query: 894 SECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRR 945
+E E +G +K + + KK+YA+ DDG + +KG E+ RR
Sbjct: 631 LPEGMELEFEGHFKRGLF--------VTKKKYALIEDDGHIV-VKGLEVVRR 673
>sp|O93746|DPOL2_AERPE DNA polymerase 2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=polB PE=3 SV=3
Length = 803
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 118/315 (37%), Gaps = 78/315 (24%)
Query: 58 DTRKVYSCIDLYFVSQDGSTFKSKY-KFRPYFYAATKEKMEMDVEAYLRRRYESQIADIE 116
+ R I L+ DGS Y +FRPYFY + +D A + RR + I
Sbjct: 19 EMRGSTPVIILWGRGADGSRVVVFYGEFRPYFYVLPDGSVGLDQLAAMIRRLSRPSSPIL 78
Query: 117 ILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILT 176
+E+ ++ G LK++ + + ++ +
Sbjct: 79 SVER----VRRRFIGREVEALKVTTLVPASVREYREAVRR-------------------- 114
Query: 177 GKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWY---------------DVSIS 221
L + D+ E D+P+ +RF ID ++ +WY D + +
Sbjct: 115 ----------LGGVRDVLEADIPFALRFIIDFNLYPMRWYVAEVREVAVPHGYSVDRAYT 164
Query: 222 STGPLLE--KRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIIN 279
+G + E R+ + V AFDIE ++ PD D ++MI
Sbjct: 165 LSGDIREDETRIQEDPLKGLRVMAFDIEVYS-KMRTPDPKKDPVIMIGL----------- 212
Query: 280 RECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDW 339
+ G +IE LE ++ +++ + ++ + P + V YN + FDW
Sbjct: 213 -QQAGGEIEILE-------------AEDRSDKKVIAGFVERVKSIDPDVIVGYNQNRFDW 258
Query: 340 PFLETRAAHHGFKMS 354
P+L RA G K++
Sbjct: 259 PYLVERARVLGVKLA 273
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 770 LYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGK-PLE 828
L D Q A K + N+ YGY+ ARWY E A VT G II+ A I K G+ LE
Sbjct: 520 LLDERQKAIKLLANASYGYMGWPHARWYCRECAEAVTAWGRSIIRTA---IRKAGELGLE 576
Query: 829 L---DTDGIWC 836
+ DTD ++
Sbjct: 577 VIYGDTDSLFV 587
>sp|P21189|DPO2_ECOLI DNA polymerase II OS=Escherichia coli (strain K12) GN=polB PE=1
SV=2
Length = 783
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 89/233 (38%), Gaps = 41/233 (17%)
Query: 741 LNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSME 800
+ +W G+ EAK GN L A K I+N+FYG + R++
Sbjct: 470 VTNIWHGR-DEAKRQGNK--------------PLSQALKIIMNAFYGVLGTTACRFFDPR 514
Query: 801 MAGVVTYTGAKIIQNARLLIEKIG-KPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTI 859
+A +T G +I++ + LIE G + DTD + L G+ E K
Sbjct: 515 LASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGR------- 567
Query: 860 SYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGI 919
++ +V+ T Q Q L + YETH + ++P +
Sbjct: 568 ---ALVQHVNAWWAETL-QKQRLTSALELEYETH------------FCRFLMPTIRGADT 611
Query: 920 LIKKRYAVFNDDGTLAEL--KGFEIKRRGELKLIKVFQAELFDKFLHGSTIEE 970
KKRYA +G + KG E R L + FQ EL+ + +E
Sbjct: 612 GSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQE 664
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 27/241 (11%)
Query: 311 IELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRA 370
+E L WFA+ P + + +N FD L+ A +++ LG D ++ E R
Sbjct: 205 LEKLNAWFANYD---PDVIIGWNVVQFDLRMLQKHAER--YRLPLRLG--RDNSELEWRE 257
Query: 371 KFACHLDCFAWVK-----------RDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMV--- 416
+ FA K + ++ S L+ V + LG NP D +
Sbjct: 258 HGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEI 317
Query: 417 --RFAKEKPQMMASYSVSDA-VATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCE 473
RFA++KP +A+Y++ D + T + T + PF+ AT+ + D GS
Sbjct: 318 DRRFAEDKP-ALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDR--HGGSVAAFG 374
Query: 474 MLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLD 533
L + ++A + PN + P ++++S + V L+ + +F +D
Sbjct: 375 HLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLID 434
Query: 534 P 534
P
Sbjct: 435 P 435
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/390 (21%), Positives = 144/390 (36%), Gaps = 89/390 (22%)
Query: 195 EYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKR--------------VDLLQRAE-- 238
E ++ + +RF +D D+ G W +V TG + DL+ A
Sbjct: 242 ESNILFVLRFMVDCDIVGGNWIEVP---TGKYKKNARTLSYCQLEFHCLYSDLISHAAEG 298
Query: 239 -------VHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQG-------YLIINREC-- 282
V +FDIE FP+A +D ++ I+ ++ QG ++ + C
Sbjct: 299 EYSKMAPFRVLSFDIECAGRKGHFPEAKHDPVIQIANLVTLQGEDHPFVRNVMTLKSCAP 358
Query: 283 -VGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPF 341
VG D+ E E E+L W +++V P I + YN FD P+
Sbjct: 359 IVGVDVMSFE-----------------TEREVLLAWRDLIRDVDPDIIIGYNICKFDLPY 401
Query: 342 LETRAAHHGFKMSEELGF-----------------QCDKNQGECRAKFACHLDCFAWVKR 384
L RAA G + LG Q + E + D + R
Sbjct: 402 LIERAATLGIEEFPLLGRVKNSRVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHR 461
Query: 385 DSYLPQGSQGLKAVTKAKLGYDPLEVNPE---DMVRFAKEKPQMMASYSVSDAVATYYLY 441
D L S L +V+ L +V+ D+ E + +A Y + DA L
Sbjct: 462 DHKL--SSYSLNSVSAHFLSEQKEDVHHSIITDLQNGNAETRRRLAVYCLKDAYLPQRLL 519
Query: 442 --MTYVHPFI-FSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKF 498
+ +++ ++ + T +P+S +L +G L+ + + N++ PN QS E+
Sbjct: 520 DKLMFIYNYVEMARVTGVPIS--FLLARGQSIKVLSQLLRKGKQKNLVLPNAKQSGSEQ- 576
Query: 499 YRNHLLESETYIGGHVECLESGVFRSDLPT 528
TY G V +G + + T
Sbjct: 577 --------GTYEGATVLEARTGFYEKPIAT 598
>sp|P26811|DPOL1_SULSO DNA polymerase 1 OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=dpo1 PE=1 SV=2
Length = 882
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 129/317 (40%), Gaps = 44/317 (13%)
Query: 225 PLLEKRVDLLQRAEVHVCAFDIET-TKLPLKFPDADYDIIMMISYMLDG----QGYLIIN 279
P+ E + ++R A DIE T + + PD+ +IS L G + L++N
Sbjct: 216 PIFETEIPKIKR-----VAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLN 270
Query: 280 RECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDW 339
R V E L+ V N E ELL +F + E I +T+NGD FD
Sbjct: 271 RNDVNEGSVKLDG---------ISVERFNTEYELLGRFFDILLEYP--IVLTFNGDDFDL 319
Query: 340 PFLETRAAHHGFKMSEELGFQCDKNQGECRAKF--ACHLDCFAWVKRDSYLPQGSQG--- 394
P++ RA G+ EE+ G+ AK+ H+D + + + +G
Sbjct: 320 PYIYFRALKLGY-FPEEIPIDV---AGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYN 375
Query: 395 ---LKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFS 451
L AV KA LG ++V + ++ F + + Y+ DA T L T+ +
Sbjct: 376 EYNLDAVAKALLGTSKVKV--DTLISFLDV--EKLIEYNFRDAEITLQL-TTFNNDLTMK 430
Query: 452 LATIIP----MSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQ--SDPEKFYRNHLLE 505
L + + +E+ R T + L + K N + P K + + + L++
Sbjct: 431 LIVLFSRISRLGIEELTRTEISTWVKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIK 490
Query: 506 SETYIGGHVECLESGVF 522
+ Y G V +G+F
Sbjct: 491 GKGYKGAVVIDPPAGIF 507
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 93/417 (22%), Positives = 160/417 (38%), Gaps = 71/417 (17%)
Query: 195 EYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRV------------DLL-------- 234
E + Y +RF ID DV W + S + RV DL+
Sbjct: 229 ESNTQYLLRFMIDCDVVGMNWIHLPASKYQFRYQNRVSNCQIEAWINYKDLISLPAEGQW 288
Query: 235 -QRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQG---YLIINRECVGEDIEDL 290
+ A + + +FDIE FPD D ++ I+ ++ G + N CV + +
Sbjct: 289 SKMAPLRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGDSTPFVRNVFCV-DTCSQI 347
Query: 291 EYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAA--- 347
T EF+ N+ E+L W +++V P + + YN FD P+L RA
Sbjct: 348 VGTQVYEFQ---------NQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDRAKSLR 398
Query: 348 ----------HHGFKMSEELGFQCDKNQGECRAKFAC-----HLDCFAWVKRDSYLPQGS 392
H+ F +++E F K G +K LD ++RD L S
Sbjct: 399 IHNFPLLGRIHNFFSVAKETTFS-SKAYGTRESKTTSIPGRLQLDMLQVMQRDFKL--RS 455
Query: 393 QGLKAVTKAKLGYDPLEVNPE---DMVRFAKEKPQMMASYSVSDAVATYYL---YMTYVH 446
L AV LG +V+ D+ + + +A Y + DA L M +V+
Sbjct: 456 YSLNAVCSQFLGEQKEDVHYSIITDLQNGTADSRRRLAIYCLKDAYLPQRLMDKLMCFVN 515
Query: 447 PFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLES 506
+ T +P + +L +G L +A + +++ PN + ++ Y +
Sbjct: 516 YTEMARVTGVPF--NFLLARGQQIKVISQLFRKALQHDLVVPNIRVNGTDEQYEGATV-I 572
Query: 507 ETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNN-------LDRDLQYAIKVEG 556
E G + + + F S P+ + Y LL++ L +D+ Y++ G
Sbjct: 573 EPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSVTPNG 629
>sp|O89042|DPOLA_RAT DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus
norvegicus GN=Pola1 PE=2 SV=1
Length = 1451
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 53/303 (17%)
Query: 766 DMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGK 825
D+V+ YD Q A K NS YG + +R+Y+ +A +VTY G +I+ + + +++K+
Sbjct: 944 DLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMN- 1002
Query: 826 PLEL---DTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTL 882
LE+ DTD I + +L++ + + +N N Y+ L
Sbjct: 1003 -LEVIYGDTDSIM----------INTNSTNLEEVFKLG--------NKVKNEVNKLYKLL 1043
Query: 883 VDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDG---TLAELKG 939
E ++DG +K+++L K+ L+ + + DG T ELKG
Sbjct: 1044 ----------------EIDIDGVFKSLLLLKKKKYAALVVEPTS----DGNYITKQELKG 1083
Query: 940 FEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELI 999
+I RR L K + + L + + + V + R +++ +N + S +
Sbjct: 1084 LDIVRRDWCDLAKDTGNFVIGQILSDQSRD---TIVENIQKRLIEIGENV---LNGSVPV 1137
Query: 1000 DYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVS 1059
+ ++K DY ++KS + G VK G Y++ + P +
Sbjct: 1138 SQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVK-AGDTVSYVICQDGSNLPAT 1196
Query: 1060 ERA 1062
+RA
Sbjct: 1197 QRA 1199
>sp|O50607|DPOL1_SULOH DNA polymerase 1 OS=Sulfurisphaera ohwakuensis GN=pol-alpha PE=3
SV=1
Length = 872
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 134/335 (40%), Gaps = 43/335 (12%)
Query: 225 PLLEKRVDLLQRAEVHVCAFDIET-TKLPLKFPDADYDIIMMISYMLDG----QGYLIIN 279
P+ E V ++R A DIE T + + PD + +IS L G + L++
Sbjct: 216 PIFESEVPDVKR-----VAIDIEVYTPIKGRIPDPEKAEFPIISISLAGNDGTKRVLVLL 270
Query: 280 RECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDW 339
RE V I + V +E EL+R +F + + I +T+NGD FD
Sbjct: 271 REDVNSQITKHDVI----------VETFKSERELIRRFFDIILDYP--IILTFNGDDFDI 318
Query: 340 PFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQG----- 394
P++ RA F EE+ F ++G+ A H+D + + + +G
Sbjct: 319 PYIYYRALKLNF-TPEEIPFDIINDEGKYLA--GIHIDLYKFFFNRAIRNYAFEGKYNEY 375
Query: 395 -LKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYM---TYVHPFIF 450
L AV A LG +V + ++ F + Y+ DA T L V I
Sbjct: 376 NLDAVATALLGMS--KVKLDTLISFLDL--DKLIEYNSRDAEITLKLTTFNNNLVWKLII 431
Query: 451 SLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQ--SDPEKFYRNHLLESET 508
LA I M +E+ R T + L + + N + P K + + + +++ +
Sbjct: 432 LLARISKMGLEELTRTEVSTWIKNLYYWEHRRRNWLIPLKEEILTRSSQIKTAAIIKGKR 491
Query: 509 YIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNN 543
Y G V +GVF + + F S Y ++ N
Sbjct: 492 YKGAVVIDPPAGVFFNVVVLDF---ASLYPSIIRN 523
>sp|P28040|DPOA_SCHPO DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1
Length = 1405
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 46/203 (22%)
Query: 771 YDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIG-KPLEL 829
+D Q A K NS YG + +R+Y+ +A ++TY G + + N + L +++G + +
Sbjct: 922 WDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALMNTKELADQMGLQVIYG 981
Query: 830 DTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKT 889
DTD VMLN +V + N + + K
Sbjct: 982 DTDS------------------------------VMLNTNVT--DKNHALRIGNEFKEKV 1009
Query: 890 YETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLA---ELKGFEIKRRG 946
E +S+ +E ++D Y+ M+L A KK+YA D ++KG ++KRR
Sbjct: 1010 NERYSK--LEIDIDNVYQRMLLHA--------KKKYAALQLDSQGKPNLDVKGLDMKRRE 1059
Query: 947 ELKLIKVFQAELFDKFLHGSTIE 969
L K D+ L G E
Sbjct: 1060 FCTLAKEASKFCLDQILSGELTE 1082
>sp|Q3KSP1|DPOL_EBVG DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain GD1)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 127/345 (36%), Gaps = 68/345 (19%)
Query: 203 RFAIDNDVRCGQWYDVSISSTGPLLEKR------------VDLLQRAE------VHVCAF 244
RF +DND WY S P L+ R DL R E AF
Sbjct: 238 RFVLDNDFVTFGWY--SCRRAIPRLQHRDSYAELEYDCEVGDLSVRREDSSWPSYQALAF 295
Query: 245 DIETTKLPLKFPDA--DYDIIMMISYMLDGQG--------YLIINRECVGEDIEDLEYTP 294
DIE FP A + D+I+ IS +L G L+ C EDIE +E
Sbjct: 296 DIECLGEE-GFPTATNEADLILQISCVLWSTGEEAGRYRRILLTLGTC--EDIEGVE--- 349
Query: 295 KPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS 354
V +E+++L +F ++++ I YN FDWP++ RA H
Sbjct: 350 ---------VYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSINP 400
Query: 355 EEL-----GFQC------DKNQGECRAKFACH------LDCFAWVKRDSYLPQGSQGLKA 397
L G C D +G RA +D +A V RD L L
Sbjct: 401 ASLGKIRAGGVCEVRRPHDAGKGFLRANTKVRITGLIPIDMYA-VCRDK-LSLSDYKLDT 458
Query: 398 VTKAKLGYDPLEVNPEDMVRFAKEKPQ---MMASYSVSDAVATYYLYMTYV-HPFIFSLA 453
V + LG +V+ +++ R P+ + Y V D+ L +V H + +A
Sbjct: 459 VARHLLGAKKEDVHYKEIPRLFAAGPEGRRRLGMYCVQDSALVMDLLNHFVIHVEVAEIA 518
Query: 454 TIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKF 498
I + VL G L+ A K N I P SD + +
Sbjct: 519 KIAHIPCRRVLDDGQQIRVFSCLLAAAQKENFILPMPSASDRDGY 563
>sp|Q1HVC1|DPOL_EBVA8 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
AG876) GN=BALF5 PE=3 SV=1
Length = 1015
Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 127/345 (36%), Gaps = 68/345 (19%)
Query: 203 RFAIDNDVRCGQWYDVSISSTGPLLEKR------------VDLLQRAE------VHVCAF 244
RF +DND WY S P L+ R DL R E AF
Sbjct: 238 RFVLDNDFVTFGWY--SCRRAIPRLQHRDSYAELEYDCEVGDLSVRREDSSWPSYQALAF 295
Query: 245 DIETTKLPLKFPDA--DYDIIMMISYMLDGQG--------YLIINRECVGEDIEDLEYTP 294
DIE FP A + D+I+ IS +L G L+ C EDIE +E
Sbjct: 296 DIECLGEE-GFPTATNEADLILQISCVLWSTGEEAGRYRRILLTLGTC--EDIEGVE--- 349
Query: 295 KPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS 354
V +E+++L +F ++++ I YN FDWP++ RA H
Sbjct: 350 ---------VYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSINP 400
Query: 355 EEL-----GFQC------DKNQGECRAKFACH------LDCFAWVKRDSYLPQGSQGLKA 397
L G C D +G RA +D +A V RD L L
Sbjct: 401 ASLGKIRAGGVCEVRRPHDAGKGFLRANTKVRITGLIPIDMYA-VCRDK-LSLSDYKLDT 458
Query: 398 VTKAKLGYDPLEVNPEDMVRFAKEKPQ---MMASYSVSDAVATYYLYMTYV-HPFIFSLA 453
V + LG +V+ +++ R P+ + Y V D+ L +V H + +A
Sbjct: 459 VARHLLGAKKEDVHYKEIPRLFAAGPEGRRRLGMYCVQDSALVMDLLNHFVIHVEVAEIA 518
Query: 454 TIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKF 498
I + VL G L+ A K N I P SD + +
Sbjct: 519 KIAHIPCRRVLDDGQQIRVFSCLLAAAQKENFILPMPSASDRDGY 563
>sp|P03198|DPOL_EBVB9 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
B95-8) GN=BALF5 PE=1 SV=1
Length = 1015
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 127/345 (36%), Gaps = 68/345 (19%)
Query: 203 RFAIDNDVRCGQWYDVSISSTGPLLEKR------------VDLLQRAE------VHVCAF 244
RF +DND WY S P L+ R DL R E AF
Sbjct: 238 RFVLDNDFVTFGWY--SCRRAIPRLQHRDSYAELEYDCEVGDLSVRREDSSWPSYQALAF 295
Query: 245 DIETTKLPLKFPDA--DYDIIMMISYMLDGQG--------YLIINRECVGEDIEDLEYTP 294
DIE FP A + D+I+ IS +L G L+ C EDIE +E
Sbjct: 296 DIECLGEE-GFPTATNEADLILQISCVLWSTGEEAGRYRRILLTLGTC--EDIEGVE--- 349
Query: 295 KPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS 354
V +E+++L +F ++++ I YN FDWP++ RA H
Sbjct: 350 ---------VYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSINP 400
Query: 355 EEL-----GFQC------DKNQGECRAKFACH------LDCFAWVKRDSYLPQGSQGLKA 397
L G C D +G RA +D +A V RD L L
Sbjct: 401 ASLGKIRAGGVCEVRRPHDAGKGFLRANTKVRITGLIPIDMYA-VCRDK-LSLSDYKLDT 458
Query: 398 VTKAKLGYDPLEVNPEDMVRFAKEKPQ---MMASYSVSDAVATYYLYMTYV-HPFIFSLA 453
V + LG +V+ +++ R P+ + Y V D+ L +V H + +A
Sbjct: 459 VARHLLGAKKEDVHYKEIPRLFAAGPEGRRRLGMYCVQDSALVMDLLNHFVIHVEVAEIA 518
Query: 454 TIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKF 498
I + VL G L+ A K N I P SD + +
Sbjct: 519 KIAHIPCRRVLDDGQQIRVFSCLLAAAQKENFILPMPSASDRDGY 563
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 742,557,747
Number of Sequences: 539616
Number of extensions: 32306054
Number of successful extensions: 79826
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 79182
Number of HSP's gapped (non-prelim): 386
length of query: 1988
length of database: 191,569,459
effective HSP length: 133
effective length of query: 1855
effective length of database: 119,800,531
effective search space: 222229985005
effective search space used: 222229985005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)