Query 000161
Match_columns 1988
No_of_seqs 441 out of 1876
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 21:19:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iay_A DNA polymerase delta ca 100.0 7E-123 2E-127 1233.6 75.4 791 41-1121 46-904 (919)
2 2gv9_A DNA polymerase; polymer 100.0 5E-121 2E-125 1235.1 62.0 822 62-1131 136-1156(1193)
3 1qht_A Protein (DNA polymerase 100.0 9E-121 3E-125 1203.7 61.6 752 45-1157 1-772 (775)
4 1s5j_A DNA polymerase I; repli 100.0 3E-115 1E-119 1157.9 45.1 781 40-1158 12-843 (847)
5 3k59_A POL II, DNA polymerase 100.0 2E-110 6E-115 1096.7 67.0 740 42-1121 6-768 (786)
6 3qex_A DNA polymerase, GP43; d 100.0 4.3E-95 1.5E-99 953.5 53.9 778 67-1155 16-902 (903)
7 1noy_A Protein (DNA polymerase 100.0 2.5E-46 8.7E-51 460.4 19.0 342 64-493 13-383 (388)
8 2py5_A DNA polymerase; protein 99.9 2.6E-26 8.9E-31 294.4 18.7 158 238-444 5-180 (575)
9 2p1j_A POLIII, DNA polymerase 98.3 2E-06 7E-11 95.3 12.1 155 235-444 8-172 (186)
10 1y97_A Three prime repair exon 98.2 5E-06 1.7E-10 95.5 13.2 118 312-463 98-224 (238)
11 3mxm_B Three prime repair exon 98.1 3.1E-06 1E-10 98.0 7.0 102 311-444 102-211 (242)
12 3u3y_B Three prime repair exon 98.0 1.2E-05 4.2E-10 95.9 9.5 102 311-444 102-211 (314)
13 3v9w_A Ribonuclease T; DEDD nu 97.9 0.00011 3.8E-09 84.3 15.1 163 236-444 34-217 (235)
14 2f96_A Ribonuclease T; RNAse, 97.8 0.00023 7.8E-09 81.1 15.5 165 236-444 26-209 (224)
15 2gui_A DNA polymerase III epsi 97.7 0.00026 8.9E-09 78.7 14.0 165 238-444 8-181 (194)
16 1w0h_A 3'-5' exonuclease ERI1; 97.7 0.0003 1E-08 78.7 14.3 170 237-444 8-191 (204)
17 2qxf_A Exodeoxyribonuclease I; 97.6 0.00048 1.6E-08 86.9 15.7 166 237-444 7-197 (482)
18 1zbh_A 3'-5' exonuclease ERI1; 97.5 0.00083 2.8E-08 80.0 14.4 170 237-444 76-259 (299)
19 1zbu_A ERI-1 homolog, 3'-5' ex 97.2 0.0011 3.9E-08 80.4 12.0 170 237-444 126-309 (349)
20 1wlj_A Interferon stimulated g 96.7 0.0026 8.8E-08 70.6 8.3 154 238-444 4-165 (189)
21 2xri_A ERI1 exoribonuclease 3; 96.7 0.0051 1.7E-07 70.1 10.6 158 239-444 31-210 (224)
22 3tr8_A Oligoribonuclease; tran 96.0 0.0052 1.8E-07 68.3 5.3 101 236-350 6-127 (186)
23 1x9m_A DNA polymerase; DNA plo 95.9 0.02 6.7E-07 75.8 10.9 153 241-444 1-179 (698)
24 2igi_A Oligoribonuclease; RNAs 95.8 0.0064 2.2E-07 66.6 4.9 106 238-350 4-123 (180)
25 1qht_A Protein (DNA polymerase 95.8 0.055 1.9E-06 72.4 14.6 108 1569-1677 489-597 (775)
26 3cg7_A CRN-4, cell death-relat 95.5 0.027 9.1E-07 67.4 9.2 163 238-444 18-205 (308)
27 3iay_A DNA polymerase delta ca 95.4 0.065 2.2E-06 72.7 13.4 111 1568-1679 636-755 (919)
28 3k59_A POL II, DNA polymerase 95.3 0.066 2.2E-06 71.5 12.7 112 1568-1679 497-625 (786)
29 2gbz_A Oligoribonuclease; ORN, 94.9 0.018 6E-07 64.2 4.7 107 237-350 7-127 (194)
30 2kfn_A Klenow fragment of DNA 94.4 0.33 1.1E-05 63.2 15.4 154 240-444 27-189 (605)
31 1s5j_A DNA polymerase I; repli 88.9 1.2 4.1E-05 60.2 11.3 101 1569-1678 570-671 (847)
32 2gv9_A DNA polymerase; polymer 87.8 1 3.4E-05 62.8 9.7 111 1569-1679 771-904 (1193)
33 3saf_A Exosome component 10; e 78.1 4.3 0.00015 50.6 8.8 142 239-444 129-273 (428)
34 3flo_B DNA polymerase alpha ca 72.3 8.5 0.00029 43.3 8.4 112 1850-1967 11-132 (206)
35 2e6m_A Werner syndrome ATP-dep 71.9 7.8 0.00027 43.0 8.1 94 325-444 94-191 (208)
36 3pv8_A DNA polymerase I; DNA p 51.0 39 0.0013 43.8 10.0 142 241-444 31-177 (592)
37 4dfk_A DNA polymerase I, therm 41.8 11 0.00037 48.4 2.7 100 235-405 6-105 (540)
38 1yt3_A Ribonuclease D, RNAse D 41.7 1.3E+02 0.0043 36.6 12.1 100 315-444 64-166 (375)
39 2hbj_A Exosome complex exonucl 37.0 72 0.0025 39.4 8.9 98 316-444 150-250 (410)
40 3qex_A DNA polymerase, GP43; d 33.6 35 0.0012 46.3 5.7 112 1568-1679 561-713 (903)
41 4hec_A Putative uncharacterize 28.2 53 0.0018 36.5 5.0 96 238-344 21-123 (190)
42 1vk0_A Hypothetical protein; h 23.9 1.8E+02 0.006 32.5 8.4 104 314-444 97-203 (206)
43 3cym_A Uncharacterized protein 22.4 4E+02 0.014 33.1 12.0 98 314-444 84-183 (440)
44 2kr4_A Ubiquitin conjugation f 22.0 50 0.0017 31.5 3.0 43 1865-1933 14-56 (85)
45 3ikm_A DNA polymerase subunit 20.5 18 0.00061 49.2 -0.7 48 393-444 287-343 (1172)
No 1
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-123 Score=1233.64 Aligned_cols=791 Identities=18% Similarity=0.239 Sum_probs=628.4
Q ss_pred ceEEEEEeeeecccccccCCCCeEEEEEEEEecCCCeEEEEe-CCccEEEEEecCC---C-hHHHHH---HHHHhccccc
Q 000161 41 KRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKY-KFRPYFYAATKEK---M-EMDVEA---YLRRRYESQI 112 (1988)
Q Consensus 41 ~~~g~L~n~~~~~~~d~~~~~~~~~v~ly~~t~dG~~~~v~v-~f~PYFyv~~~~~---~-~~~v~~---~l~~~~~~~i 112 (1988)
.-..|+++..+.++.......++++|++||+|++|.+||++| +|+|||||.++++ . .+++++ .|++.+.+.+
T Consensus 46 ~~~f~~ld~~~~~~~~~~~~~~~~virlfg~t~~G~sv~v~V~gf~PYFYv~~~~~~~~~~~~~~~~~~~~L~~~~~~~v 125 (919)
T 3iay_A 46 DISFQQIDAEQSVLNGIKDENTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSSDANDQEQINKFVHYLNETFDHAI 125 (919)
T ss_dssp CEEEEEEEEEEEECSSSCBTTBCEEEEEEEEETTSCEEEEEEESCCCEEEEECCSSGGGGCHHHHHHHHHHHHTTTTTCE
T ss_pred ceEEEEEeccccccccccccCCeeEEEEEEEeCCCCEEEEEECCcCCEEEEEcCCcccccchhHHHHHHHHHHHhhcCCc
Confidence 466899999987652111113689999999999999999999 9999999999887 3 344544 4555556789
Q ss_pred eeEEEEEEeeCCCcCcCCCCCeEEEEEEEechhhHHHHHHHHHHHHHhhcccchhHHHHHHhhhcccCCCCccccccccc
Q 000161 113 ADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVD 192 (1988)
Q Consensus 113 ~~ie~v~k~dl~~~nhl~g~~~~~lKl~f~~~~~l~~vr~~l~~~~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~~i~~ 192 (1988)
.+||+|+|++|+..|| +.+++|+||+|.+|.++.++|+.|++ +.. .|. ...+.+++
T Consensus 126 ~~ve~v~K~~l~gy~~--~~~~~~lKI~~~~p~~v~~~r~~l~~----g~~------~~~------------~~~~~~~~ 181 (919)
T 3iay_A 126 DSIEVVSKQSIWGYSG--DTKLPFWKIYVTYPHMVNKLRTAFER----GHL------SFN------------SWFSNGTT 181 (919)
T ss_dssp EEEEEEEEEESSCCSC--SCCEEEEEEEESSTTHHHHHHHHHHH----SCC------CGG------------GSSTTCCC
T ss_pred eEEEEEeeeccccCCC--CCceEEEEEEEcCHHHHHHHHHHHHc----ccc------ccc------------cccccCcc
Confidence 9999999999985554 56799999999999999999999984 110 010 11124678
Q ss_pred ccccCCCccceeeeecCCccceeEEEeeCC-------C-----CceEEEe----------ccccCCCCceEEEEEEEEcc
Q 000161 193 LREYDVPYHIRFAIDNDVRCGQWYDVSISS-------T-----GPLLEKR----------VDLLQRAEVHVCAFDIETTK 250 (1988)
Q Consensus 193 i~E~DI~~~~R~~iD~~I~~g~W~~v~~~~-------~-----~~~i~~~----------~~~~~~p~lrvLsfDIEt~s 250 (1988)
+|| ||||++||+||++|+||+||+++... . ++++.+. .++...|++++|||||||.+
T Consensus 182 ~yE-dI~~~~RfliD~~I~g~~W~~i~~~~~~~~~~~~~~S~c~~Ev~v~~~~l~~~~~~~~~~~~PplrilSfDIEt~~ 260 (919)
T 3iay_A 182 TYD-NIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINYRNLIAHPAEGDWSHTAPLRIMSFDIECAG 260 (919)
T ss_dssp CBC-CCCHHHHHHHHHTCCTTCEEEECTTSEEECCGGGCCBCCSEEEEEETTTCEEECSSGGGSCCCCCEEEEEEEEECC
T ss_pred ccc-CCChHhhheeecCCccceEEEEecCcceeccccCCccceeEEEEeeccccccccccccccCCCCceEEEEEEEECC
Confidence 999 99999999999999999999997432 1 2344331 12335799999999999999
Q ss_pred CCCCCCCCCCCeEEEEEEEEcCCceEEE-cccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHHHHHHhhCCCEE
Q 000161 251 LPLKFPDADYDIIMMISYMLDGQGYLII-NRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIY 329 (1988)
Q Consensus 251 ~~~~fPdp~~D~Ii~IS~~~~~~g~li~-nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~~~I~~~DPDII 329 (1988)
.++.||+|+.|+|||||+++..+|.... .+. -|.+.+++...| +.|..+++|++||.+|+++|+++|||||
T Consensus 261 ~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~-------~f~l~~~~~~~~-~~V~~~~sE~eLL~~F~~~i~~~DPDII 332 (919)
T 3iay_A 261 RIGVFPEPEYDPVIQIANVVSIAGAKKPFIRN-------VFTLNTCSPITG-SMIFSHATEEEMLSNWRNFIIKVDPDVI 332 (919)
T ss_dssp CTTSCCCTTTCCEEEEEEEEEETTCSSCSEEE-------EEEESCCCCBTT-BEEEEESSHHHHHHHHHHHHHHHCCSEE
T ss_pred CCCCCCCCCCCcEEEEEEEEecCCCcccceeE-------EEEecCCCCCCC-CeEEECCCHHHHHHHHHHHHHHhCCCEE
Confidence 8888999999999999998866553110 011 133334444443 6899999999999999999999999999
Q ss_pred EeeCcccCCHHHHHHHHHHcCCCCCcccCccccCC-------------CC-----ceeeccceEechHHHHhhccCCCCC
Q 000161 330 VTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKN-------------QG-----ECRAKFACHLDCFAWVKRDSYLPQG 391 (1988)
Q Consensus 330 vGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~-------------~g-----~~~i~GRihiDl~~~vkrd~~L~~~ 391 (1988)
+|||+++||||||.+||+.||++.+..+|+. ++. .| .+.+.||+|+|+|++++++. ++.
T Consensus 333 vGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~-~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~lDl~~~~k~~~--~l~ 409 (919)
T 3iay_A 333 IGYNTTNFDIPYLLNRAKALKVNDFPYFGRL-KTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDLLQFIQREY--KLR 409 (919)
T ss_dssp EESSTTTTHHHHHHHHHHHTTCTTCSCCSSB-TTCCCCBCCEEEEETTTEEEEECCBCCTTCEEEEHHHHHHHHC--CCS
T ss_pred EecCCccCCHHHHHHHHHHcCCCchhhhccc-cCccccccccccccccccccccceeEEcCeEEEEhHHHHHhhc--CCC
Confidence 9999999999999999999999988777765 211 11 24689999999999999974 559
Q ss_pred CCCHHHHHHHHcCCCCCCCChHHHHHHHhhC---hHHHHHHHHHhhHHHHHHHHHh-ccchHhhhhhhcCCChHHHhhhh
Q 000161 392 SQGLKAVTKAKLGYDPLEVNPEDMVRFAKEK---PQMMASYSVSDAVATYYLYMTY-VHPFIFSLATIIPMSPDEVLRKG 467 (1988)
Q Consensus 392 SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~---~~~La~Y~l~Da~lt~~L~~Kl-v~~~i~~La~i~~l~~~~vlr~G 467 (1988)
||+|++||+++||++|.++++++|.++|.++ +.+++.||++||.+|++|+.|+ ++++++++|+++|+++++|+++|
T Consensus 410 sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl~~l~~~~elArl~Gi~~~~vl~rG 489 (919)
T 3iay_A 410 SYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARG 489 (919)
T ss_dssp CCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHSC
T ss_pred CCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHcCCCHHHhhccc
Confidence 9999999999999999999999999999854 5699999999999999999998 78999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHCCeeccCCCCCCchhhhcccccCCCCCCcceeeeccCccccCCCCCCccCChhHHHHHhhhhhhh
Q 000161 468 SGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRD 547 (1988)
Q Consensus 468 sg~~~E~LLm~~a~~~n~i~Pnk~~~~~~~~~~g~l~~setY~GG~V~~p~~GvY~~d~~~~f~~~~~~~~~l~~~~~~~ 547 (1988)
++.+||++|+++|+++|+|+|+++... ..++|.||+|++|++|+|.+
T Consensus 490 ~qi~ves~Llr~a~~~~~ilP~~~~~~----------~~~~y~Gg~V~eP~~G~y~~----------------------- 536 (919)
T 3iay_A 490 QQIKVVSQLFRKCLEIDTVIPNMQSQA----------SDDQYEGATVIEPIRGYYDV----------------------- 536 (919)
T ss_dssp HHHHHHHHHHHHHHHTTEECBCCCCCC----------CSSCCCCCCBCCCCCEEECS-----------------------
T ss_pred chHHHHHHHHHHHhhCCeeCCCccccc----------ccccCCCCEEecCCCCceec-----------------------
Confidence 999999999999999999999987531 24689999999999999987
Q ss_pred hHHHHhHhcccccccccchHHHHHHHHHHHHhhccCCCcccCCeEEEEeccccchHHHHhcCCCCCccccccccccccCC
Q 000161 548 LQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFN 627 (1988)
Q Consensus 548 l~~~~~~e~~~~~~~~~n~~~v~~~i~~~l~~l~~~p~~~~~p~V~~LDf~SLYPsII~t~NL~p~Tiv~~~~c~~c~~n 627 (1988)
||++|||+|||||||++|||||+|++.+..+.. ++
T Consensus 537 -------------------------------------------pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~~~~--~~ 571 (919)
T 3iay_A 537 -------------------------------------------PIATLDFNSLYPSIMMAHNLCYTTLCNKATVER--LN 571 (919)
T ss_dssp -------------------------------------------CEEEEEETTHHHHHHHHTTCSGGGEECHHHHHH--TT
T ss_pred -------------------------------------------cEEEEEecccchHHHHhcCcCcccccccchhhh--cC
Confidence 699999999999999999999999986531100 00
Q ss_pred CCCCccccccccccccccccCCcchhhHhhhhcccccccCCCCCcccccccCchHHHHHHHHHHHHHhhhhhcccccccc
Q 000161 628 RPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKP 707 (1988)
Q Consensus 628 ~p~~~c~r~m~w~~~ge~~p~~~~ey~~i~~~l~~e~f~~~~~g~~~~~~~L~~~~q~~~lkkrl~~y~~kvy~k~~~~~ 707 (1988)
.+ | ..+| ...|. |. .| .+.
T Consensus 572 ~~-----------------~--~~~~---------~~~p~---g~--~f------------------------~~~---- 590 (919)
T 3iay_A 572 LK-----------------I--DEDY---------VITPN---GD--YF------------------------VTT---- 590 (919)
T ss_dssp CC-----------------B--TTTE---------EECTT---SC--EE------------------------ECT----
T ss_pred CC-----------------C--Ccce---------eeCCC---Cc--EE------------------------ecc----
Confidence 00 0 0011 00010 00 01 110
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000161 708 VTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYG 787 (1988)
Q Consensus 708 ~~~~r~~~icqre~~f~~~~lr~f~drR~~~K~l~K~~k~~~~~a~~~~d~~~~~e~~~~~~lyds~QlA~K~ilNS~YG 787 (1988)
.+..+++|.+|+.|+++|.++|+.||. +.|+. +..+||++|+|+|++|||+||
T Consensus 591 ----------~~~~gilp~~l~~ll~~R~~~K~~mk~----------~~d~~-------~~~~ld~~Q~AlKi~~NS~YG 643 (919)
T 3iay_A 591 ----------KRRRGILPIILDELISARKRAKKDLRD----------EKDPF-------KRDVLNGRQLALKISANSVYG 643 (919)
T ss_dssp ----------TTCCCHHHHHHHHHHHHHHHHHHHHHT----------CCCHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHhh----------cCChH-------HHHHHHHHHHhhccccccccc
Confidence 123469999999999999999998874 23554 247999999999999999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc---------CCe-EEEccceeeEEcCCCCCcccccccccccccc
Q 000161 788 YVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKI---------GKP-LELDTDGIWCVLPGSFPENFTFKTKDLKKKL 857 (1988)
Q Consensus 788 y~g~~~sR~ys~e~A~~VT~~Gr~iI~~a~~lve~~---------G~~-vygDTDSI~~~lp~~~pe~~~~k~~~g~k~i 857 (1988)
|+|+.++||||.++|++||++||++|+.|++++|+. |.. ||||||||||.+++...++ ++ +.| +++
T Consensus 644 ~~G~~~~r~~~~~iA~siT~~GR~~l~~t~~~ie~~~~~~~g~~~~~~ViYGDTDSvfv~~~~~~~~~-~~--~~g-~~~ 719 (919)
T 3iay_A 644 FTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKE-AM--DLG-TEA 719 (919)
T ss_dssp HHTCSSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGTCSSCCEEEECBSSEEEEECSCSCHHH-HH--HHH-HHH
T ss_pred ccccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCCeeEEEcCCCCHHH-HH--HHH-HHH
Confidence 999999999999999999999999999999999986 666 6999999999988643221 21 233 332
Q ss_pred cccccccccchhhhccccchhhhhccCCccccccccccceeEEeeeceeeeeecccccccCcccccceEEEcCC-----C
Q 000161 858 TISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDD-----G 932 (1988)
Q Consensus 858 ~~sy~~~~ln~~V~~~~tN~~y~~l~~~~~~~y~~~s~~~I~fE~Dg~Y~~miLp~s~~~~~~~KKRYa~~~~d-----G 932 (1988)
+..|++.| +.+|++|+||+|++|+|.+ ||||||+..+ |
T Consensus 720 ---------~~~v~~~~--------------------~~~i~le~E~vy~~~ll~~--------KKrYag~~~~~~~~~~ 762 (919)
T 3iay_A 720 ---------AKYVSTLF--------------------KHPINLEFEKAYFPYLLIN--------KKRYAGLFWTNPDKFD 762 (919)
T ss_dssp ---------HHHHHTTS--------------------CTTCCEEEEEEEEEEEEEE--------TTEEEEEEESSSSSCC
T ss_pred ---------HHHHHHhC--------------------CCCEEEEEeeeehhhhhhc--------ccceEEEEeccCCCCc
Confidence 23332222 2235666669999999965 9999997422 3
Q ss_pred CEEEEEeeeeccCChhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhccccccCh
Q 000161 933 TLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSL 1012 (1988)
Q Consensus 933 ~~~e~KG~E~kRRd~~~liK~~q~~v~~~~L~g~~lee~~~~v~~v~~~~~d~L~~~~~~~~~~eLi~~i~~~k~lsK~l 1012 (1988)
+ +++||+|++|||||+++|++|+++++.+|.+.+++++.+.+++++. +++.++++.++|+ ++|+|+|
T Consensus 763 ~-~~~KGie~vRrD~~~~~k~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~l~~~~~~~~~lv----i~k~l~k-- 829 (919)
T 3iay_A 763 K-LDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETIN------DILHNRVDISKLI----ISKTLAP-- 829 (919)
T ss_dssp E-EEEESSGGGCTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------HHHTTCSCGGGGC----EEEECCS--
T ss_pred e-EEEEeEEEEeCCchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------HHHcCCCCHHHeE----Eeeeccc--
Confidence 4 4999999999999999999999999999999999999998887665 3568999989988 8999999
Q ss_pred hhhCCCCChHHHHHHHHHhhcCCCcccCCCCeeEEEEEcCCCCCCCcccccchhhhcchHHHHHHHHHhhhcCCCCCCCc
Q 000161 1013 ADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSSDVGIR 1092 (1988)
Q Consensus 1013 ~eY~~~k~~~v~~A~rl~e~lG~~~~~~~G~~i~YVI~~~p~g~~v~eRa~p~~if~~~~~~~~~~l~~w~~~~~~~d~~ 1092 (1988)
+|++ ++|||.+|+||+++.| ..+.+|++|+|||+ + .|++.++||+++..+..+ .
T Consensus 830 -~Y~~-~~phv~~A~r~~~~~~--~~~~~G~rI~YVi~-g-~~~~~~~ra~~p~~~~~~--------------------~ 883 (919)
T 3iay_A 830 -NYTN-PQPHAVLAERMKRREG--VGPNVGDRVDYVII-G-GNDKLYNRAEDPLFVLEN--------------------N 883 (919)
T ss_dssp -CCSS-CCHHHHHHHHHHHHHS--CCCCTTSEEEEEEB-C-SSSCGGGCEECHHHHHHT--------------------T
T ss_pred -CCCC-CChHHHHHHHHHHhcC--CCCCCCCEEEEEEE-C-CCCchhhhccCHHHHhcc--------------------C
Confidence 8986 6999999999998644 77899999999999 6 678999999999654321 4
Q ss_pred cccCHHHHHHhhhhhhhheeechhhhhhc
Q 000161 1093 SIVDWSYYKQRLSSAIQKIITIPAAMQKV 1121 (1988)
Q Consensus 1093 ~~iD~~YYierl~~~i~ki~~iPa~lq~~ 1121 (1988)
..||++|||++ |++|+++|.+
T Consensus 884 ~~iD~~yYi~~--------qi~ppl~Ri~ 904 (919)
T 3iay_A 884 IQVDSRYYLTN--------QLQNPIISIV 904 (919)
T ss_dssp CCBCHHHHHHH--------TTHHHHHHHH
T ss_pred CCCCHHHHHHh--------ccHHHHHHHH
Confidence 68999999999 9999999864
No 2
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=100.00 E-value=4.6e-121 Score=1235.13 Aligned_cols=822 Identities=17% Similarity=0.228 Sum_probs=582.2
Q ss_pred CeEEEEEEEEecCCCeEEEEe-CCccEEEEEecCC-------ChHHHHHHH----HHh-------ccccceeEEEEEEee
Q 000161 62 VYSCIDLYFVSQDGSTFKSKY-KFRPYFYAATKEK-------MEMDVEAYL----RRR-------YESQIADIEILEKED 122 (1988)
Q Consensus 62 ~~~~v~ly~~t~dG~~~~v~v-~f~PYFyv~~~~~-------~~~~v~~~l----~~~-------~~~~i~~ie~v~k~d 122 (1988)
.+++|++||+|++|.+||++| +|+|||||.++++ ...++.++| ++. ....+.++++|+|+|
T Consensus 136 ~g~vi~l~g~t~~G~sv~v~v~~f~pYFYv~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ve~V~k~~ 215 (1193)
T 2gv9_A 136 TGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCERMAAALRESPGASFRGISADHFEAEVVERTD 215 (1193)
T ss_dssp CEEEEEEEEECSSCCEEEEEEECCCEEEEEEHHHHHHTTCCCSHHHHHHHHHHHHHHSSSCCTTCCCGGGCEEEEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEECCCCeEEEEECCCcccccccccHHHHHHHHHHHHHhhccccccccccCcceEEEEEEee
Confidence 468999999999999999999 9999999998753 234566665 322 123578899999999
Q ss_pred CCCcCcCCCCCeEEEEEEEechhhHHHHHHHHHHHHHhhcccchhHHHHHHhhhcccCCCCcccccccccccccCCCccc
Q 000161 123 LDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYHI 202 (1988)
Q Consensus 123 l~~~nhl~g~~~~~lKl~f~~~~~l~~vr~~l~~~~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~~i~~i~E~DI~~~~ 202 (1988)
|+..| +.+.+|+||+|.+|+++..+|+.+. ..+++||+||+|+.
T Consensus 216 l~~~~---~~~~~~~ki~~~~p~~v~~lr~~~~---------------------------------~~~~~~E~dI~~~~ 259 (1193)
T 2gv9_A 216 VYYYE---TRPALFYRVYVRSGRVLSYLCDNFC---------------------------------PAIKKYEGGVDATT 259 (1193)
T ss_dssp SSCSS---CCCEEEEEEEESCHHHHHHHHHHTC---------------------------------SSSCEESTTCCHHH
T ss_pred ccccC---CCcceEEEEeccCHHHHHHHHhhcc---------------------------------CCceEEeccCchhh
Confidence 98654 7889999999999999998886422 23679999999999
Q ss_pred eeeeec-CCccceeEEEeeCCC----------------CceEEE-------eccccCCCCceEEEEEEEEccC---CCCC
Q 000161 203 RFAIDN-DVRCGQWYDVSISST----------------GPLLEK-------RVDLLQRAEVHVCAFDIETTKL---PLKF 255 (1988)
Q Consensus 203 R~~iD~-~I~~g~W~~v~~~~~----------------~~~i~~-------~~~~~~~p~lrvLsfDIEt~s~---~~~f 255 (1988)
||+||+ +|++|+||+++.... ++++.+ .++...+|++++|||||||++. +++|
T Consensus 260 RfliD~~~i~~~~W~~i~~~~~g~~~~~r~~~~~~s~c~~E~~~~~~~~~~~~~~~~~P~lrvlsfDIE~~~~g~~~~~F 339 (1193)
T 2gv9_A 260 RFILDNPGFVTFGWYRLKPGRNNTLAQPRAPMAFGTSSDVEFNCTADNLAIEGGMSDLPAYKLMCFDIECKAGGEDELAF 339 (1193)
T ss_dssp HHHHHSTTCCSSEEEEECCBTTTBCCEECCGGGCSBSCSEEEEEEGGGEEECCSCCCCCCCEEEEEEEEEECCSSCTTSC
T ss_pred eEeEEcCCCCCcceEEEecccccceeeeccccccCCCCceEEEEEcccceEccccCCCCCceEEEEEEEEcccCCCCCCC
Confidence 999999 999999999987410 233333 1233458999999999999975 5689
Q ss_pred CCCC--CCeEEEEEEEEcCC---ce----EEEcccccccccccccCCCCCC-CCCceEEecCCCHHHHHHHHHHHHHhhC
Q 000161 256 PDAD--YDIIMMISYMLDGQ---GY----LIINRECVGEDIEDLEYTPKPE-FEGYFKVTNVNNEIELLRLWFAHMQEVK 325 (1988)
Q Consensus 256 Pdp~--~D~Ii~IS~~~~~~---g~----li~nreivs~di~~feytp~~~-~~g~f~V~~~~dE~eLL~~F~~~I~~~D 325 (1988)
|+|+ .|+|||||+++... +. ++..+. ..++.+|+++++++ ++|. .|..+++|++||.+|+++|+++|
T Consensus 340 P~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~--~~~~~~f~~~~k~~~~~~~-~V~~~~sE~eLL~~F~~~I~~~D 416 (1193)
T 2gv9_A 340 PVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGS--CDLPESHLNELAARGLPTP-VVLEFDSEFEMLLAFMTLVKQYG 416 (1193)
T ss_dssp CCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESC--CCCCHHHHHHHHHTTCCCC-EEEEESSHHHHHHHHHHHHHHHC
T ss_pred CCccccCCceEEEEEEEEeccCCCcceEEEEECCC--cCCcchhhhhcccccCCCc-eEEecCCHHHHHHHHHHHHHhcC
Confidence 9995 59999999987533 22 122221 13456777777654 3343 58899999999999999999999
Q ss_pred CCEEEeeCcccCCHHHHHHHH-HHcCCCCC--cccCccc----cC-------CCCceeeccceEechHHHHhhccCCCCC
Q 000161 326 PGIYVTYNGDYFDWPFLETRA-AHHGFKMS--EELGFQC----DK-------NQGECRAKFACHLDCFAWVKRDSYLPQG 391 (1988)
Q Consensus 326 PDIIvGYNgd~FDlPyL~~Ra-~~lGi~l~--~~iG~~~----~~-------~~g~~~i~GRihiDl~~~vkrd~~L~~~ 391 (1988)
||||+|||+++||||||.+|| ..||+++. +++++.. .+ ..+.+.+.||+|+|+|.++++... +.
T Consensus 417 PDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~GRv~lDl~~~~~~~~k--l~ 494 (1193)
T 2gv9_A 417 PEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDKIK--LS 494 (1193)
T ss_dssp CSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETTBEEEEHHHHHTTTCC--CS
T ss_pred CCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEcCeEeehHHHHHHHHhc--cC
Confidence 999999999999999999996 67888763 3332210 00 012467899999999999988654 58
Q ss_pred CCCHHHHHHHHcCCCCCCCChHHHHHHHhhCh---HHHHHHHHHhhHHHHHHHHHhccch-HhhhhhhcCCChHHHhhhh
Q 000161 392 SQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKP---QMMASYSVSDAVATYYLYMTYVHPF-IFSLATIIPMSPDEVLRKG 467 (1988)
Q Consensus 392 SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~---~~La~Y~l~Da~lt~~L~~Klv~~~-i~~La~i~~l~~~~vlr~G 467 (1988)
||+|++||+++||++|.++++++|.++|.+++ ..+++||++||.+|++|+.|+++.+ ++++|+|+|+++++|+++|
T Consensus 495 sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl~~~lel~elarl~gi~~~~vl~~G 574 (1193)
T 2gv9_A 495 SYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINITRTIYDG 574 (1193)
T ss_dssp CCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGTTSSC
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 99999999999999999999999999999776 4799999999999999999985543 4689999999999999999
Q ss_pred hHHHHHHHHHHHHHHCCeeccCCCCCCchh----------hhccc----------------------------ccCCCCC
Q 000161 468 SGTLCEMLLMVQAYKANVICPNKHQSDPEK----------FYRNH----------------------------LLESETY 509 (1988)
Q Consensus 468 sg~~~E~LLm~~a~~~n~i~Pnk~~~~~~~----------~~~g~----------------------------l~~setY 509 (1988)
++.+||++||++|++.|+|+|+++.....+ +.+++ .....+|
T Consensus 575 ~~irves~Ll~~a~~~~~ilP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 654 (1193)
T 2gv9_A 575 QQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGY 654 (1193)
T ss_dssp STHHHHHHHHHHHHHHTEECBCCC--------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHCCEeCCCcccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 999999999999999999999987532110 00000 0123489
Q ss_pred CcceeeeccCccccCCCCCCccCChhHHHHHhhhhhhhhHHHHhHhcccccccccchHHHHHHHHHHHHhhccCCCcccC
Q 000161 510 IGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREEC 589 (1988)
Q Consensus 510 ~GG~V~~p~~GvY~~d~~~~f~~~~~~~~~l~~~~~~~l~~~~~~e~~~~~~~~~n~~~v~~~i~~~l~~l~~~p~~~~~ 589 (1988)
.||+|++|++|+|.+
T Consensus 655 ~Gg~VleP~~Gly~~----------------------------------------------------------------- 669 (1193)
T 2gv9_A 655 QGAKVLDPTSGFHVN----------------------------------------------------------------- 669 (1193)
T ss_dssp ----CCCCCCEEECS-----------------------------------------------------------------
T ss_pred CCCEEeecCCCeeeC-----------------------------------------------------------------
Confidence 999999999999876
Q ss_pred CeEEEEeccccchHHHHhcCCCCCccccccccccccCCCCCCccccccccccccccccCCcchhhHhhhhcccccccCCC
Q 000161 590 PLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTN 669 (1988)
Q Consensus 590 p~V~~LDf~SLYPsII~t~NL~p~Tiv~~~~c~~c~~n~p~~~c~r~m~w~~~ge~~p~~~~ey~~i~~~l~~e~f~~~~ 669 (1988)
||++|||+|||||||++|||||+|++.+..| |....| .++| ..++..
T Consensus 670 -pV~vLDF~SLYPSII~a~Nlc~sTl~~~~~~--~~~l~~--------------------~~dy---------~~~~~~- 716 (1193)
T 2gv9_A 670 -PVVVFDFASLYPSIIQAHNLCFSTLSLRADA--VAHLEA--------------------GKDY---------LEIEVG- 716 (1193)
T ss_dssp -CEEEEEEETHHHHHHHHTTCCTTTEESCSTT--STTCCT--------------------TTTE---------EEEECS-
T ss_pred -cEEEEeccccchHHHHHhcCCcceeccCchh--hccCCC--------------------ccce---------eEecCC-
Confidence 5999999999999999999999999876432 110001 0122 111110
Q ss_pred CCcccccccCchHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000161 670 GHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKL 749 (1988)
Q Consensus 670 ~g~~~~~~~L~~~~q~~~lkkrl~~y~~kvy~k~~~~~~~~~r~~~icqre~~f~~~~lr~f~drR~~~K~l~K~~k~~~ 749 (1988)
|.... |.+.+ ...++++++|+.|+++|+++|++||.+
T Consensus 717 -~~~~~------------------------fvk~~--------------~~~gilp~lL~~ll~~Rk~~K~~mk~~---- 753 (1193)
T 2gv9_A 717 -GRRLF------------------------FVKAH--------------VRESLLSILLRDWLAMRKQIRSRIPQS---- 753 (1193)
T ss_dssp -SSEEE------------------------EECTT--------------TSCCHHHHHHHHHHHHHHHHHHHGGGS----
T ss_pred -CCcee------------------------eccCc--------------cccchHHHHHHHHHHHHHHHHHhcccC----
Confidence 00000 11111 123699999999999999999998863
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc------
Q 000161 750 SEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKI------ 823 (1988)
Q Consensus 750 ~~a~~~~d~~~~~e~~~~~~lyds~QlA~K~ilNS~YGy~g~~~sR~ys~e~A~~VT~~Gr~iI~~a~~lve~~------ 823 (1988)
++. +..+||++|+|+||+|||+|||+|++++||||+++|++||++||++|++|+++||+.
T Consensus 754 -------~~~-------~~~llD~~QlAlKi~aNS~YG~~G~~~grlpc~~iA~sVT~~GR~~L~~tk~~IE~~~~~~~~ 819 (1193)
T 2gv9_A 754 -------SPE-------EAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATREYVHARWAAFEQ 819 (1193)
T ss_dssp -------CHH-------HHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHH
T ss_pred -------CHH-------HHHHHHHHHHHHHHhhcceecccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 232 347999999999999999999999999999999999999999999999999999863
Q ss_pred -----------------CCe-EEEccceeeEEcCCCCCcccccccccccccccccccccccchhhhccccchhhhhccCC
Q 000161 824 -----------------GKP-LELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDP 885 (1988)
Q Consensus 824 -----------------G~~-vygDTDSI~~~lp~~~pe~~~~k~~~g~k~i~~sy~~~~ln~~V~~~~tN~~y~~l~~~ 885 (1988)
|+. ||||||||||.+|+..+++ ++ +.| +++ +..| +|+.+
T Consensus 820 l~~~f~~~~~~~~~~~~g~~VIYGDTDSvfV~~~~~~~~~-~~--~~g-~~i---------~~~i----~~~~~------ 876 (1193)
T 2gv9_A 820 LLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAG-LT--AMG-DKM---------ASHI----SRALF------ 876 (1193)
T ss_dssp HHHHCGGGGGGBCSSCCEEEEEEECSSEEEEEEETBCSTT-HH--HHH-HHH---------HHHH----HHHHC------
T ss_pred hhhhcccccccccccccccceeeccCCceEEecCCCCHHH-HH--HHH-HHH---------HHHH----HHhcc------
Confidence 554 7999999999998765443 22 123 322 2222 22221
Q ss_pred ccccccccccceeEEeeeceeeeeecccccccCcccccceEEEcCCCCEEEEEeeeeccCChhHHHHHHHHHHHHHHhCC
Q 000161 886 VSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHG 965 (1988)
Q Consensus 886 ~~~~y~~~s~~~I~fE~Dg~Y~~miLp~s~~~~~~~KKRYa~~~~dG~~~e~KG~E~kRRd~~~liK~~q~~v~~~~L~g 965 (1988)
+.+|+||+||+|++|+|++ ||||||++.+|++ ++||+|+||||||+|+|++|+++++.||.|
T Consensus 877 ---------~~~i~LE~Ekvy~~~ll~~--------KKRYag~~~~g~l-~~KG~e~vRRD~~~lvk~~~~~vl~~ll~~ 938 (1193)
T 2gv9_A 877 ---------LPPIKLECEKTFTKLLLIA--------KKKYIGVIYGGKM-LIKGVDLVRKNNCAFINRTSRALVDLLFYD 938 (1193)
T ss_dssp ---------CTTCEEEEEEEEEEEEEEE--------TTEEEEEETTSCE-EEESCCSCCTTSCHHHHHHHHHHHHHHHHC
T ss_pred ---------CCCEEEEeceeeHHHhhhc--------cceEEEEecCCEe-EEECCeeecCchHHHHHHHHHHHHHHHHcC
Confidence 3568888889999999987 9999999999998 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH---------------------HHHHHHHHHHhcCCCCCchhhhhhhhhccccccChhhhCCCCChHHH
Q 000161 966 STIEECYSAVAA---------------------VANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVT 1024 (1988)
Q Consensus 966 ~~lee~~~~v~~---------------------v~~~~~d~L~~~~~~~~~~eLi~~i~~~k~lsK~l~eY~~~k~~~v~ 1024 (1988)
+++++|+++|++ +.+.|.++ +.+++++++|+ ++|+|||++++|.++++|||+
T Consensus 939 ~d~~~a~~~v~~~~~~e~~~~~~~~~~~~i~~~l~~~~~~l---~~~~v~i~~lv----itk~LsK~~~~Y~~~~~phv~ 1011 (1193)
T 2gv9_A 939 DTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRI---TDPERDIQDFV----LTAELSRHPRAYTNKRLAHLT 1011 (1193)
T ss_dssp HHHHHHHHHGGGSCHHHHHHSCCCGGGHHHHHHHHHHHHHH---HSSCSCCGGGC----BCC------------------
T ss_pred CCHHHHHHHHhhcchhhhhhccchhHHHHHHHHHHHHHHHH---HcCCCCHHHHH----HHhhcCCChhHhcccCCcHHH
Confidence 999999987643 34555554 46889999988 799999999999987899999
Q ss_pred HHHHHHhhcCCCcccCCCCeeEEEEEcCCCCCCCcccccchhhhc-------ch------------------HH------
Q 000161 1025 TARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFE-------TD------------------AE------ 1073 (1988)
Q Consensus 1025 ~A~rl~e~lG~~~~~~~G~~i~YVI~~~p~g~~v~eRa~p~~if~-------~~------------------~~------ 1073 (1988)
+|+||+++.| ..++.|++|+|||++++.+ +.++|++++.++ .+ +.
T Consensus 1012 vA~rl~~~~~--~~p~~GdrI~YVI~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1087 (1193)
T 2gv9_A 1012 VYYKLMARRA--QVPSIKDRIPYVIVAQTRE--VEETVARLAALRELDAAAPGDEPAPPAALPSPAKRPRETPSHADPPG 1087 (1193)
T ss_dssp ---------------CCTTTSCBEEBCC----------------------------------------------------
T ss_pred HHHHHHHhcC--CCCCCCCEEEEEEEECCCC--ccccccchhhhhcccccccCCcccccccccccccccccccccccccc
Confidence 9999998755 5789999999999988764 347777777764 10 00
Q ss_pred ----HHHHHHHhhhcCCC-CCCCccccCHHHHHHhhhhhh----hheeec--hhhhhhccCCCCCcchh
Q 000161 1074 ----IMKFYLRKWCKTSS-DVGIRSIVDWSYYKQRLSSAI----QKIITI--PAAMQKVSNPVPRVVHP 1131 (1988)
Q Consensus 1074 ----~~~~~l~~w~~~~~-~~d~~~~iD~~YYierl~~~i----~ki~~i--Pa~lq~~~npv~rv~~p 1131 (1988)
.++.++..|-.|+. ..+.+.+||++||+++|..++ +.|.-. +++.+.+.|+||++.+.
T Consensus 1088 ~~~~~~~~~~~~~aedp~yv~~~~~~i~~~yY~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1156 (1193)
T 2gv9_A 1088 GASKPRKLLVSELAEDPAYAIAHGVALNTDYYFSHLLGAACVTFKALFGNNAKITESLLKRFIPEVWHP 1156 (1193)
T ss_dssp ------CCCSSCCEECHHHHHHTTCCBCHHHHHHHHHHHHHHHSGGGGTTCHHHHHHHHHTTSCGGGC-
T ss_pred cccccccchhhhhccCcHHHhhcCCcccHHHHHHHhhhHHHHHHHHhcCcchhHHHHHhhccCCceeeC
Confidence 00001111222211 112257999999999988876 333322 46667777777766543
No 3
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=100.00 E-value=9e-121 Score=1203.75 Aligned_cols=752 Identities=26% Similarity=0.383 Sum_probs=572.1
Q ss_pred EEEeeeecccccccCCCCeEEEEEEEEecCCCeEEEEe-CCccEEEEEecCCChHHHHHHHHHhc---cc----cceeEE
Q 000161 45 WLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKY-KFRPYFYAATKEKMEMDVEAYLRRRY---ES----QIADIE 116 (1988)
Q Consensus 45 ~L~n~~~~~~~d~~~~~~~~~v~ly~~t~dG~~~~v~v-~f~PYFyv~~~~~~~~~v~~~l~~~~---~~----~i~~ie 116 (1988)
||+++.|.+. .|.++|++||.+ +|+++++.+ +|+|||||.++++.. .+.+.+.. .+ .+.+++
T Consensus 1 ~ll~~~y~~~------~~~~~i~~~~~~-~g~~~~~~~~~f~PYfyv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 70 (775)
T 1qht_A 1 MILDTDYITE------NGKPVIRVFKKE-NGEFKIEYDRTFEPYFYALLKDDSA---IEDVKKVTAKRHGTVVKVKRAEK 70 (775)
T ss_dssp CEEEEEEEEE------TTEEEEEEEEEE-TTEEEEEEECCCCCEEEEEESCGGG---HHHHTTCEEEETTEEEECCEEEE
T ss_pred CeEEEEEecc------CCCEEEEEEEee-CCEEEEEEECCCceEEEEECCCCcc---HHHHHHHHHHhcCCCcceEEEEE
Confidence 6889988652 267999999987 477776655 999999999988632 23332221 12 233444
Q ss_pred EEEEeeCCCcCcCCCCCeEEEEEEEechhhHHHHHHHHHHHHHhhcccchhHHHHHHhhhcccCCCCccccccccccccc
Q 000161 117 ILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREY 196 (1988)
Q Consensus 117 ~v~k~dl~~~nhl~g~~~~~lKl~f~~~~~l~~vr~~l~~~~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~~i~~i~E~ 196 (1988)
|+|+ +.|.+++|+||+|.+|.++.++|+.+++ .+.+.++||+
T Consensus 71 -v~k~-------~~g~~~~~~ki~~~~~~~~~~~r~~l~~------------------------------~~~~~~~~E~ 112 (775)
T 1qht_A 71 -VQKK-------FLGRPIEVWKLYFNHPQDVPAIRDRIRA------------------------------HPAVVDIYEY 112 (775)
T ss_dssp -EEEE-------ETTEEEEEEEEECSCTTHHHHHHHHHHT------------------------------STTEEEEESC
T ss_pred -EEee-------ecCCCceEEEEEEcCHHHHHHHHHHHHh------------------------------CCCceeeEec
Confidence 4444 6688999999999999999999998883 1235789999
Q ss_pred CCCccceeeeecCCccceeEEEeeCCCCceEEEeccccCCCCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEcCCceE
Q 000161 197 DVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYL 276 (1988)
Q Consensus 197 DI~~~~R~~iD~~I~~g~W~~v~~~~~~~~i~~~~~~~~~p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~~g~l 276 (1988)
||||+.||+||++|.++.| .|+++++||||||++ .+||+|..|+|+|||++.++.+.+
T Consensus 113 dI~~~~r~lid~~i~~~~~--------------------~~~l~ilsfDIEt~~--~~~p~~~~d~Ii~Is~~~~~~~~~ 170 (775)
T 1qht_A 113 DIPFAKRYLIDKGLIPMEG--------------------DEELTMLAFAIATLY--HEGEEFGTGPILMISYADGSEARV 170 (775)
T ss_dssp SSCHHHHHHHHTTCCTTCS--------------------CCCCCEEEEEEEECC--CTTCCTTCSCEEEEEEECSSCEEE
T ss_pred cCChHheeeEEcCccccCC--------------------CCCcEEEEEEEEEcC--CCCCCCCCCcEEEEEEEecCCCee
Confidence 9999999999999999877 369999999999997 468999999999999987665555
Q ss_pred EEcccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHHcCCCCCcc
Q 000161 277 IINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEE 356 (1988)
Q Consensus 277 i~nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~ 356 (1988)
++++++... .|..+++|++||.+|+++|+++|||||+|||+++||||||.+||..||+++.
T Consensus 171 ~t~~~i~~~-----------------~v~~~~~E~~LL~~f~~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~-- 231 (775)
T 1qht_A 171 ITWKKIDLP-----------------YVDVVSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFT-- 231 (775)
T ss_dssp EESSCCCCS-----------------SEEECSCHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCC--
T ss_pred Eeecccccc-----------------ceEEcCCHHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcc--
Confidence 555433111 2667899999999999999999999999999999999999999999999873
Q ss_pred cCccccC-----CCC---ceeeccceEechHHHHhhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhCh--HHH
Q 000161 357 LGFQCDK-----NQG---ECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKP--QMM 426 (1988)
Q Consensus 357 iG~~~~~-----~~g---~~~i~GRihiDl~~~vkrd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~--~~L 426 (1988)
+|+. .. ..| .+.++||+|+|+|.+++++.++ .||+|++||+++||.+|.++++++|.++|.+++ .++
T Consensus 232 lgR~-~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l--~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l 308 (775)
T 1qht_A 232 LGRD-GSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINL--PTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERV 308 (775)
T ss_dssp CSTT-SCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCC--SCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHH
T ss_pred cccC-CCcCceeecCceeeEEecCeEEEEHHHHHHHhcCc--CcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHH
Confidence 4442 11 012 2457899999999999997655 899999999999999999999999999999776 899
Q ss_pred HHHHHHhhHHHHHHHHHhccchHhhhhhhcCCChHHHhhhhhHHHHHHHHHHHHHHCCeeccCCCCCCchhhhcccccCC
Q 000161 427 ASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLES 506 (1988)
Q Consensus 427 a~Y~l~Da~lt~~L~~Klv~~~i~~La~i~~l~~~~vlr~Gsg~~~E~LLm~~a~~~n~i~Pnk~~~~~~~~~~g~l~~s 506 (1988)
++||++||.+|++|+.++ +|+++++|+++|+++++|+|.|+|++||++||++|+++|+++|+++... ...++ .
T Consensus 309 ~~Y~~~Da~lt~~L~~~~-~~~~~~la~i~g~~~~~v~r~~~~~~ve~~Ll~~~~~~~~i~P~~~~~~---~~~~~---~ 381 (775)
T 1qht_A 309 ARYSMEDAKVTYELGREF-FPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDER---ELARR---R 381 (775)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSCHHHHTTCCHHHHHHHHHHHHHHHTTBCCCCCCCHH---HHHHT---T
T ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHhCCCchhceecccHHHHHHHHhHHHHhCCEeCCCCCchh---hhhcc---c
Confidence 999999999999999875 7899999999999999999999999999999999999999999986431 12222 5
Q ss_pred CCCCcceeeeccCccccCCCCCCccCChhHHHHHhhhhhhhhHHHHhHhcccccccccchHHHHHHHHHHHHhhccCCCc
Q 000161 507 ETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIR 586 (1988)
Q Consensus 507 etY~GG~V~~p~~GvY~~d~~~~f~~~~~~~~~l~~~~~~~l~~~~~~e~~~~~~~~~n~~~v~~~i~~~l~~l~~~p~~ 586 (1988)
++|.||+|++|++|+|++
T Consensus 382 ~~y~Gg~V~eP~~G~y~~-------------------------------------------------------------- 399 (775)
T 1qht_A 382 GGYAGGYVKEPERGLWDN-------------------------------------------------------------- 399 (775)
T ss_dssp TCCCCCCBCCCCCSCEEE--------------------------------------------------------------
T ss_pred cccCCceEecccCCcccc--------------------------------------------------------------
Confidence 789999999999999988
Q ss_pred ccCCeEEEEeccccchHHHHhcCCCCCccccccccccccCCCCCCccccccccccccccccCCcchhhHhhhhccccccc
Q 000161 587 EECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVD 666 (1988)
Q Consensus 587 ~~~p~V~~LDf~SLYPsII~t~NL~p~Tiv~~~~c~~c~~n~p~~~c~r~m~w~~~ge~~p~~~~ey~~i~~~l~~e~f~ 666 (1988)
|++|||+|||||||++|||||+|++.. .|+... . .|
T Consensus 400 -----v~~lDF~SLYPSIi~~~nl~~~t~~~~----~~~~~~------------------~-----------------~~ 435 (775)
T 1qht_A 400 -----IVYLDFRSLYPSIIITHNVSPDTLNRE----GCKEYD------------------V-----------------AP 435 (775)
T ss_dssp -----EEEEECSSHHHHHHHHTTCSTTTBTCT----TCSCEE------------------E-----------------CT
T ss_pred -----eeecchhcccHHHHHhcCCCccccccc----cccccc------------------c-----------------CC
Confidence 999999999999999999999999633 332110 0 00
Q ss_pred CCCCCcccccccCchHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHHHHhhhhhhh
Q 000161 667 GTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWK 746 (1988)
Q Consensus 667 ~~~~g~~~~~~~L~~~~q~~~lkkrl~~y~~kvy~k~~~~~~~~~r~~~icqre~~f~~~~lr~f~drR~~~K~l~K~~k 746 (1988)
. .| ...|++..+++|.+|+.++++|.++|+.||.
T Consensus 436 ~--~~------------------------------------------~~f~~~~~g~lp~~l~~l~~~R~~~K~~~k~-- 469 (775)
T 1qht_A 436 E--VG------------------------------------------HKFCKDFPGFIPSLLGDLLEERQKIKRKMKA-- 469 (775)
T ss_dssp T--TC------------------------------------------CEEECSSCCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred c--cC------------------------------------------cccccccCCCchHHHHHHHHHHHHHHHHhhc--
Confidence 0 00 0123445579999999999999999988875
Q ss_pred hhhHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Q 000161 747 GKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLI-EKIGK 825 (1988)
Q Consensus 747 ~~~~~a~~~~d~~~~~e~~~~~~lyds~QlA~K~ilNS~YGy~g~~~sR~ys~e~A~~VT~~Gr~iI~~a~~lv-e~~G~ 825 (1988)
+.|+. +..+||++|+|+|+++||+|||+|+++|||||++||++||++||++|++|++.+ ++.|+
T Consensus 470 --------~~~~~-------~~~~~d~~Q~A~Ki~~NS~YG~~g~~~~r~~~~~~A~~vT~~Gr~~i~~~~~~i~~~~g~ 534 (775)
T 1qht_A 470 --------TVDPL-------EKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGF 534 (775)
T ss_dssp --------CCCHH-------HHHHHHHHHHHHHHHHTTHHHHHHCTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred --------CCCHH-------HHHHHHHHHHhhheeeccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 23443 347999999999999999999999999999999999999999999999999775 55697
Q ss_pred e-EEEccceeeEEcCCCCCcccccccccccccccccccccccchhhhccccchhhhhccCCccccccccccceeEEeeec
Q 000161 826 P-LELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDG 904 (1988)
Q Consensus 826 ~-vygDTDSI~~~lp~~~pe~~~~k~~~g~k~i~~sy~~~~ln~~V~~~~tN~~y~~l~~~~~~~y~~~s~~~I~fE~Dg 904 (1988)
. ||||||||||.+|+.++++.. ..| +++ .. .+|..+ +.+|+||+||
T Consensus 535 ~ViygDTDSi~v~~~~~~~~~~~---~~~-~~~---------~~-----~i~~~~---------------~~~~~le~e~ 581 (775)
T 1qht_A 535 KVLYADTDGLHATIPGADAETVK---KKA-KEF---------LK-----YINPKL---------------PGLLELEYEG 581 (775)
T ss_dssp EEEEEETTEEEEECTTCCHHHHH---HHH-HHH---------HH-----HHC---------------------CCCEEEE
T ss_pred eEEEeeccceEEEcCCCCHHHHH---HHH-HHH---------HH-----HHHhcC---------------CCCeEEEEeE
Confidence 6 699999999999987665432 123 222 11 112111 3457788889
Q ss_pred eeeeeecccccccCcccccceEEEcCCCCEEEEEeeeeccCChhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000161 905 PYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLD 984 (1988)
Q Consensus 905 ~Y~~miLp~s~~~~~~~KKRYa~~~~dG~~~e~KG~E~kRRd~~~liK~~q~~v~~~~L~g~~lee~~~~v~~v~~~~~d 984 (1988)
+|++|+|++ |||||+++.+|++ ++||+|+||||||+++|++|+++++.+|.++++++|++.+++++++
T Consensus 582 ~y~~~~l~~--------KKrYa~~~~~g~l-~~KG~e~vRrd~~~l~k~~~~~vl~~ll~~~d~~~~~~~v~~~~~~--- 649 (775)
T 1qht_A 582 FYVRGFFVT--------KKKYAVIDEEGKI-TTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVKEVTEK--- 649 (775)
T ss_dssp EEEEEEEEE--------TTEEEEECTTCCC-EEESCSCCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC-----
T ss_pred Eeeeheecc--------cCeEEEEccCCeE-EEEeeEEEeCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---
Confidence 999999976 9999999999998 9999999999999999999999999999999999999999877664
Q ss_pred HHHhcCCCCCchhhhhhhhhccccccChhhhCCCCChHHHHHHHHHhhcCCCcccCCCCeeEEEEEcCCCCCCCcccccc
Q 000161 985 LLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVP 1064 (1988)
Q Consensus 985 ~L~~~~~~~~~~eLi~~i~~~k~lsK~l~eY~~~k~~~v~~A~rl~e~lG~~~~~~~G~~i~YVI~~~p~g~~v~eRa~p 1064 (1988)
++++.++.++|+ ++|+|+|++++|++ ++|||++|+||+++ | ..+.+|++|+|||++++. ++++||+|
T Consensus 650 ---l~~~~~~~~~lv----i~k~lsk~~~~Y~~-~~phv~~A~rl~~~-g--~~~~~GdrI~YVi~~g~~--~~~~ra~~ 716 (775)
T 1qht_A 650 ---LSKYEVPPEKLV----IHEQITRDLRDYKA-TGPHVAVAKRLAAR-G--VKIRPGTVISYIVLKGSG--RIGDRAIP 716 (775)
T ss_dssp -------------CC----BCCBC--------C-CHHHHHHHHHHHTT-T--CCCCTTCBCCEEECCC-------CSEEE
T ss_pred ---HHcCCCCHHHhh----hhHHhcCCHHHcCC-CChHHHHHHHHHhc-C--CCCCCCCEEEEEEEeCCC--ChhhcccC
Confidence 456889989988 78999999999997 68999999999985 7 457899999999998764 89999999
Q ss_pred hhhhcchHHHHHHHHHhhhcCCCCCCCccccCHHHHHHhhhhhhhheeechhhhhhccCCCCCcchhhhhhhhhhccccc
Q 000161 1065 VAIFETDAEIMKFYLRKWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDK 1144 (1988)
Q Consensus 1065 ~~if~~~~~~~~~~l~~w~~~~~~~d~~~~iD~~YYierl~~~i~ki~~iPa~lq~~~npv~rv~~p~w~~~~~~~~~~~ 1144 (1988)
++.|..+ ...|||+|||++ |++|++.|.+. |+ ++...+|.. ..
T Consensus 717 ~~~~~~~--------------------~~~iD~~yYi~~--------qi~ppl~ri~~-~~-g~~~~~l~~-------~~ 759 (775)
T 1qht_A 717 ADEFDPT--------------------KHRYDAEYYIEN--------QVLPAVERILK-AF-GYRKEDLRY-------QK 759 (775)
T ss_dssp TTCC-----------------------------CHHHHT--------THHHHSHHHHH-TT-TC----------------
T ss_pred HHHhccC--------------------CCCCCHHHHHHh--------cCHHHHHHHHH-Hh-CCCHHHhhh-------cC
Confidence 9988532 357999999999 99999999764 32 443333321 22
Q ss_pred cccccHHHhhhcc
Q 000161 1145 FRQRKLVDIFSSL 1157 (1988)
Q Consensus 1145 ~kq~~l~~~f~~~ 1157 (1988)
-+|.+|++||.+.
T Consensus 760 ~~q~~L~~ff~~~ 772 (775)
T 1qht_A 760 TKQVGLGAWLKVK 772 (775)
T ss_dssp -------------
T ss_pred CccccHHHHhhhc
Confidence 3699999999753
No 4
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=100.00 E-value=3e-115 Score=1157.91 Aligned_cols=781 Identities=22% Similarity=0.268 Sum_probs=517.3
Q ss_pred CceEEEEEeeeecccccccCCCCeEEEEEEEEecCCCeEEEEe-CCccEEEEEecCCChHHHHHHHHHhccccceeEEEE
Q 000161 40 DKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKY-KFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEIL 118 (1988)
Q Consensus 40 ~~~~g~L~n~~~~~~~d~~~~~~~~~v~ly~~t~dG~~~~v~v-~f~PYFyv~~~~~~~~~v~~~l~~~~~~~i~~ie~v 118 (1988)
..+.|||+|++|++. .+.++|++||++++|..+++++ +|+|||||.++++...++.+++++ ..+.+||.|
T Consensus 12 ~~~~~~ll~~~y~~~------~~~~vi~l~~~~~~~~~~~~~v~gf~pYfyv~~~~~~~~~~~~~~~~---~~~~~ve~v 82 (847)
T 1s5j_A 12 ENKIYFLLQVDYDGK------KGKAVCKLFDKETQKIYALYDNTGHKPYFLVDLEPDKVGKIPKIVRD---PSFDHIETV 82 (847)
T ss_dssp TTCEEEEEEEEEETT------TTEEEEEEEETTTTEEEEEECCSCCCCEEEESSCHHHHTTCHHHHTC---TTEEEEEEE
T ss_pred cCCeEEEEeeeeecC------CCCeEEEEEEeeCCccEEEEEcCCCceEEEEECCcHHHHHHHHHhcc---CCceEEEEE
Confidence 568899999999653 2679999999999998888998 899999998876532233344432 358999999
Q ss_pred EEeeCCCcCcCCCCCeEEEEEEEechhhHHHHHHHHHHHHHhhcccchhHHHHHHhhhcccCCCCcccccccccccccCC
Q 000161 119 EKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDV 198 (1988)
Q Consensus 119 ~k~dl~~~nhl~g~~~~~lKl~f~~~~~l~~vr~~l~~~~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~~i~~i~E~DI 198 (1988)
+|+|+ +.|.+++|+||+|.+|.+++++|+.|. ++||+||
T Consensus 83 ~k~~~-----~~~~~~~~~ki~~~~p~~v~~~r~~l~------------------------------------~~~EadI 121 (847)
T 1s5j_A 83 SKIDP-----YTWNKFKLTKIVVRDPLAVRRLRNDVP------------------------------------KAYEAHI 121 (847)
T ss_dssp EEECT-----TTCCEEEEEEEEESSHHHHHHHTTSSS------------------------------------CEESCSS
T ss_pred EeEec-----cCCCceeEEEEEEeCHHHHHHHHHHhh------------------------------------hheecCC
Confidence 99987 347889999999999999988764221 7899999
Q ss_pred CccceeeeecCCccceeEEEeeCCC---CceEE----E-------e---------ccc-----cCCCCceEEEEEEEE-c
Q 000161 199 PYHIRFAIDNDVRCGQWYDVSISST---GPLLE----K-------R---------VDL-----LQRAEVHVCAFDIET-T 249 (1988)
Q Consensus 199 ~~~~R~~iD~~I~~g~W~~v~~~~~---~~~i~----~-------~---------~~~-----~~~p~lrvLsfDIEt-~ 249 (1988)
||+.||+||++|++|+||+++.... ..++. + . .++ ..+|+++++|||||| +
T Consensus 122 ~~~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ilsfDIEt~s 201 (847)
T 1s5j_A 122 KYFNNYMYDIGLIPGMPYVVKNGKLESVYLSLDEKDVEEIKKAFADSDEMTRQMAVDWLPIFETEIPKIKRVAIDIEVYT 201 (847)
T ss_dssp CHHHHHHHHHTCCTTSEEEEETTEEEECCCCCCHHHHHHHHHHTTTSCHHHHHHHHHHTHHHHSCCCCCCEEEEEEEECC
T ss_pred chHhhhheecCccceEEEEEecccccccccccchhhccchhhhhccchhhhcccccccchhcccCCCCceEEEEEEEeCc
Confidence 9999999999999999999876431 00110 0 0 011 137999999999999 4
Q ss_pred cCCCCCCCCCC--CeEEEEEEEEcCCc---eEEEcccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHHHHHHhh
Q 000161 250 KLPLKFPDADY--DIIMMISYMLDGQG---YLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEV 324 (1988)
Q Consensus 250 s~~~~fPdp~~--D~Ii~IS~~~~~~g---~li~nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~~~I~~~ 324 (1988)
+.+++||+|+. |+|++||+.. ++| .++++++..+.++.+ +. ++.|..+++|++||.+|+++|+++
T Consensus 202 ~~~g~fP~~~~~~d~Ii~Is~~~-~~g~~~~~~~~~~~~~~~~~~--------i~-~~~v~~~~~E~~LL~~f~~~i~~~ 271 (847)
T 1s5j_A 202 PVKGRIPDSQKAEFPIISIALAG-SDGLKKVLVLNRNDVNEGSVK--------LD-GISVERFNTEYELLGRFFDILLEY 271 (847)
T ss_dssp SSSSCCCCTTTCCSCEEEEEEEE-TTSCEEEEEECSSCCCCCCEE--------ET-TEEEEEESSHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCccccCCcEEEEEEEc-cCCCcEEEEEeCCcccccccC--------CC-CCeEEEeCCHHHHHHHHHHHhccC
Confidence 46789999975 9999999973 333 344555443332211 12 256888999999999999999764
Q ss_pred CCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhcc---C---CCCCCCCHHHH
Q 000161 325 KPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDS---Y---LPQGSQGLKAV 398 (1988)
Q Consensus 325 DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~---~---L~~~SysL~~V 398 (1988)
|+|+|||+++||||||.+||+.||++.. .+++. ..+.+...+.||+|+|+|++++++. | .+..||+|++|
T Consensus 272 --diivgyN~~~FDlPyL~~Ra~~lgi~~~-~~p~~-~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~sysL~~V 347 (847)
T 1s5j_A 272 --PIVLTFNGDDFDLPYIYFRALKLGYFPE-EIPID-VAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAV 347 (847)
T ss_dssp --SEEEESSTTTTHHHHHHHHHHTTTCCGG-GCSEE-CCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSCSHHHH
T ss_pred --CEEEEeCCCCchHHHHHHHHHHcCCCcc-cCCee-ecCCCceEeccEEEeehHHHHhhhhhhhhccccccccccHHHH
Confidence 7999999999999999999999999742 22222 1012345679999999999987632 1 13479999999
Q ss_pred HHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHH--Hh-ccchHhhhhhhcCCChHHHhhhhhHHHHHHH
Q 000161 399 TKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYM--TY-VHPFIFSLATIIPMSPDEVLRKGSGTLCEML 475 (1988)
Q Consensus 399 a~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~--Kl-v~~~i~~La~i~~l~~~~vlr~Gsg~~~E~L 475 (1988)
|+++||++|.+++ .++ ...++.++++||++||.+|++|+. +. ++++++++|+++|+|+++|+|.|+|++||++
T Consensus 348 a~~~Lg~~K~dv~-~~i---~~~~~~~l~~Ycl~Da~lt~~L~~~~~~~~~~~~~~la~i~~lp~~~l~r~~~~~~v~sl 423 (847)
T 1s5j_A 348 AKALLGTSKVKVD-TLI---SFLDVEKLIEYNFRDAEITLQLTTFNNDLTMKLIVLFSRISRLGIEELTRTEISTWVKNL 423 (847)
T ss_dssp HHHHHCCCCC--S-SCT---TTCCHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHCCCHHHHTTSCHHHHHHHH
T ss_pred HHHHhCCCCcchh-Hhh---hhccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhCCCchhhcccchhhhhHHH
Confidence 9999999999986 323 234678999999999999999953 33 6889999999999999999999999999999
Q ss_pred HHHHHHHCCeeccCCCCCCc--hhhhcccccCCCCCCcceeeeccCccccCCCCCCccCChhHHHHHhhhhhhhhHHHHh
Q 000161 476 LMVQAYKANVICPNKHQSDP--EKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIK 553 (1988)
Q Consensus 476 Lm~~a~~~n~i~Pnk~~~~~--~~~~~g~l~~setY~GG~V~~p~~GvY~~d~~~~f~~~~~~~~~l~~~~~~~l~~~~~ 553 (1988)
|+++|+++|+++|+++.... .....+++.++++|.||+|++|++|+|.+
T Consensus 424 ll~~~~~~~~i~P~~~~~~~~~~~~~~~~~~~~~~y~Gg~V~eP~~G~y~~----------------------------- 474 (847)
T 1s5j_A 424 YYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIFFN----------------------------- 474 (847)
T ss_dssp HHHHHHHHTBCCCCHHHHHHTTCC--------------CCCCCCCSEEEEE-----------------------------
T ss_pred HHHHHHhcCcccCCchhhhhhcccccchhccccccccCCcccCCCCCcccc-----------------------------
Confidence 99999999999999853110 01123344566899999999999999987
Q ss_pred HhcccccccccchHHHHHHHHHHHHhhccCCCcccCCeEEEEeccccchHHHHhcCCCCCccccccccccccCCCCCCcc
Q 000161 554 VEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTC 633 (1988)
Q Consensus 554 ~e~~~~~~~~~n~~~v~~~i~~~l~~l~~~p~~~~~p~V~~LDf~SLYPsII~t~NL~p~Tiv~~~~c~~c~~n~p~~~c 633 (1988)
|++|||+|||||||++|||||+|++.+. |.. + .|
T Consensus 475 --------------------------------------v~~lDf~SLYPSIi~~~Nl~~~T~~~~~-~~~---~----~~ 508 (847)
T 1s5j_A 475 --------------------------------------ITVLDFASLYPSIIRTWNLSYETVDIQQ-CKK---P----YE 508 (847)
T ss_dssp --------------------------------------EEEEEETTHHHHHHHHTTCCTTTBSCSC-CSS---C----CE
T ss_pred --------------------------------------eeEeehhhhchHHHHHcCCCcceecccc-ccc---c----cc
Confidence 9999999999999999999999998652 310 0 00
Q ss_pred ccccccccccccccCCcchhhHhhhhcccccccCCCCCcccccccCchHHHHHHHHHHHHHhhhhhcccccccccccccc
Q 000161 634 LRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELRE 713 (1988)
Q Consensus 634 ~r~m~w~~~ge~~p~~~~ey~~i~~~l~~e~f~~~~~g~~~~~~~L~~~~q~~~lkkrl~~y~~kvy~k~~~~~~~~~r~ 713 (1988)
. ....|+ ..
T Consensus 509 ~---------------------------~~~~~~--------------------------------------------~~ 517 (847)
T 1s5j_A 509 V---------------------------KDETGE--------------------------------------------VL 517 (847)
T ss_dssp E---------------------------CCSSSC--------------------------------------------CC
T ss_pred c---------------------------cccCCC--------------------------------------------Cc
Confidence 0 000111 12
Q ss_pred cccccccccchHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccC
Q 000161 714 AGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKG 793 (1988)
Q Consensus 714 ~~icqre~~f~~~~lr~f~drR~~~K~l~K~~k~~~~~a~~~~d~~~~~e~~~~~~lyds~QlA~K~ilNS~YGy~g~~~ 793 (1988)
..+|+++++++|.+++.|++.|.++|+.+++. +..|+. +..+||++|+|+|+++||+|||+|+++
T Consensus 518 ~~~~~~~~g~~p~~l~~l~~~R~~~kk~~~k~--------~~~~~~-------~~~~~d~~Q~AlKi~~NS~YG~~g~~~ 582 (847)
T 1s5j_A 518 HIVCMDRPGITAVITGLLRDFRVKIYKKKAKN--------PNNSEE-------QKLLYDVVQRAMKVFINATYGVFGAET 582 (847)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHTHHHHHTC--------TTSCHH-------HHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred eeEeccCCcccHHHHHHHHHHHHHHHHHHHhc--------cCCCHH-------HHHHHHHHHHHHHHHhhcccccccccc
Confidence 24678888999999999999999887654321 112443 457999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCe-EEEccceeeEEcCCCCCcccccccccccccccccccccccchhhhc
Q 000161 794 ARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKP-LELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVAR 872 (1988)
Q Consensus 794 sR~ys~e~A~~VT~~Gr~iI~~a~~lve~~G~~-vygDTDSI~~~lp~~~pe~~~~k~~~g~k~i~~sy~~~~ln~~V~~ 872 (1988)
+||||+++|++||++||++|++|++++|+.|+. ||||||||||.+|+. +. . +++ ...|
T Consensus 583 ~~~~~~~~A~~iT~~GR~~l~~t~~~ve~~g~~ViYGDTDSi~v~~~~~--~~-------~-~~~---------~~~v-- 641 (847)
T 1s5j_A 583 FPLYAPRVAESVTALGRYVITSTVKKAREEGLTVLYGDTDSLFLLNPPK--NS-------L-ENI---------IKWV-- 641 (847)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEESCCH--HH-------H-HHH---------HHHH--
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCcceEEecCcH--HH-------H-HHH---------HHHH--
Confidence 999999999999999999999999999999986 699999999987642 00 0 111 0111
Q ss_pred cccchhhhhccCCccccccccccceeEEeeeceeeeeecccccccCcccccceEEEcCCCCEEEEEeeeeccCChhHHHH
Q 000161 873 NNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIK 952 (1988)
Q Consensus 873 ~~tN~~y~~l~~~~~~~y~~~s~~~I~fE~Dg~Y~~miLp~s~~~~~~~KKRYa~~~~dG~~~e~KG~E~kRRd~~~liK 952 (1988)
+ ++.+|++|+||+|++|+|+ +.||||||++.||++ ++||+|++|||||+|+|
T Consensus 642 ---~-----------------~~~~i~le~e~vy~~~ll~-------~~KKrYag~~~~g~~-~~KG~e~vRrd~~~l~k 693 (847)
T 1s5j_A 642 ---K-----------------TTFNLDLEVDKTYKFVAFS-------GLKKNYFGVYQDGKV-DIKGMLVKKRNTPEFVK 693 (847)
T ss_dssp ---H-----------------HHSSCCEEEEEEEEEEEEC-----------CEEEECSSSCC-CEESCCC--------CC
T ss_pred ---H-----------------hhcCccEEecchhHhHccc-------hhhCcEEEEecCCee-eeeeeEEeeCCcHHHHH
Confidence 1 1235788888999999885 349999999999998 99999999999999999
Q ss_pred HHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhccccccChhhhCCCCChHHHHHHHH
Q 000161 953 VFQAELFDKFLHGS---TIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRL 1029 (1988)
Q Consensus 953 ~~q~~v~~~~L~g~---~lee~~~~v~~v~~~~~d~L~~~~~~~~~~eLi~~i~~~k~lsK~l~eY~~~k~~~v~~A~rl 1029 (1988)
++|+++++.+|.+. +++++++.+++.+.+|.+ +++++.++.++|+ ++++|+|++++|.++++|||++|++|
T Consensus 694 ~~~~~~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~~~~~l~----~~k~l~k~~~~Y~~~~~~hv~~A~~~ 767 (847)
T 1s5j_A 694 KVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYE--KLKNKGYNLDELA----FKVMLSKPLDAYKKNTPQHVKAALQL 767 (847)
T ss_dssp SHHHHHHHHHHTTCCSCCTTHHHHHHHHHHHHHHC--TTC----------------------------------------
T ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH--HHHcCCCCHHHEE----EEEEeccChhHhccCCCHHHHHHHHH
Confidence 99999999999876 466677777777776665 3556788878877 89999999999998889999999999
Q ss_pred HhhcCCCcccCCCCeeEEEEEcCCCCCCCcccccchhhhcchHHHHHHHHHhhhcCCCCCCCccccCHHHHHHhhhhhhh
Q 000161 1030 SDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSSDVGIRSIVDWSYYKQRLSSAIQ 1109 (1988)
Q Consensus 1030 ~e~lG~~~~~~~G~~i~YVI~~~p~g~~v~eRa~p~~if~~~~~~~~~~l~~w~~~~~~~d~~~~iD~~YYierl~~~i~ 1109 (1988)
++ .| ..++.|++|+|||++++.|+ .|.+... ...|||+||+++|..+++
T Consensus 768 ~~-~g--~~~~~GdrI~Yvi~~~~~g~------~~~~~~~----------------------~~~iD~~~Yl~~l~~~~~ 816 (847)
T 1s5j_A 768 RP-FG--VNVLPRDIIYYVKVRSKDGV------KPVQLAK----------------------VTEIDAEKYLEALRSTFE 816 (847)
T ss_dssp -----------------------------------------------------------------CCSSTTHHHHHTTST
T ss_pred Hh-cC--CCCCCCCEEEEEEEeCCCCC------Chhhhcc----------------------ccCCCHHHHHHhhhhHHH
Confidence 88 47 56799999999999887663 3433221 126899999999554444
Q ss_pred heeechhhhhhccCCCCCcchhhhhhhhhhccccccc-cccHHHhhhccc
Q 000161 1110 KIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFR-QRKLVDIFSSLK 1158 (1988)
Q Consensus 1110 ki~~iPa~lq~~~npv~rv~~p~w~~~~~~~~~~~~k-q~~l~~~f~~~~ 1158 (1988)
+| .+-++...+... +++|.+||.+..
T Consensus 817 ~i-----------------------l~~~g~~~~~i~~~~~l~~ff~~~~ 843 (847)
T 1s5j_A 817 QI-----------------------LRAFGVSWDEIAATMSIDSFFSYPS 843 (847)
T ss_dssp TH-----------------------HHHHSCCCCCC--------------
T ss_pred HH-----------------------HHHhCCCHHHhcCcCcHHHHhCccc
Confidence 43 333444444443 367999998643
No 5
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=100.00 E-value=1.8e-110 Score=1096.69 Aligned_cols=740 Identities=21% Similarity=0.274 Sum_probs=576.6
Q ss_pred eEEEEEeeeecccccccCCCCeEEEEEEEEecCCCeEEEEe-CCccEEEEEecCCChHHHHHHHHHhccccceeEEEEEE
Q 000161 42 RLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKY-KFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEK 120 (1988)
Q Consensus 42 ~~g~L~n~~~~~~~d~~~~~~~~~v~ly~~t~dG~~~~v~v-~f~PYFyv~~~~~~~~~v~~~l~~~~~~~i~~ie~v~k 120 (1988)
..||||+.|+.+++ ++++|++|++|++|. +||.+ +|+|||||..++. ..++..+.. ....+++.+..
T Consensus 6 ~~g~~l~~~~~~~~------~g~~i~~~g~t~~G~-~~v~v~~~~~yfy~~~~~~--~~~~~~~~~---~~~~~~~~~~l 73 (786)
T 3k59_A 6 QAGFILTRHWRDTP------QGTEVSFWLATDNGP-LQVTLAPQESVAFIPADQV--PRAQHILQG---EQGFRLTPLAL 73 (786)
T ss_dssp EEEEEEEEEEEEET------TEEEEEEEEEETTEE-EEEECSCCCEEEEEEGGGH--HHHHHHTTT---CCSEEEEEEEE
T ss_pred cccEEEeeEEEEeC------CceEEEEEEEcCCCC-EEEEEcCCceEEEEECCcH--HHHHHHHhc---CCceEEEEeee
Confidence 56999999997765 459999999999995 99988 9999999977663 344433322 12344444443
Q ss_pred eeCCCcCcCCCCCeEEEEEEEechhhHHHHHHHHHHHHHhhcccchhHHHHHHhhhcccCCCCcccccccccccccCCCc
Q 000161 121 EDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPY 200 (1988)
Q Consensus 121 ~dl~~~nhl~g~~~~~lKl~f~~~~~l~~vr~~l~~~~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~~i~~i~E~DI~~ 200 (1988)
++ | ..++++||+|.+|++++++|+.++. ..+++||+||+|
T Consensus 74 ~~------~--~~~~~~~i~~~~~~~~~~~r~~l~~--------------------------------~g~~v~EadI~~ 113 (786)
T 3k59_A 74 KD------F--HRQPVYGLYCRAHRQLMNYEKRLRE--------------------------------GGVTVYEADVRP 113 (786)
T ss_dssp EC------T--TCCEEEEEEESSHHHHHHHHHHHHH--------------------------------TTCCCBSTTCCH
T ss_pred ee------e--cCceEEEEEECCHHHHHHHHHHHHH--------------------------------cCCceeeccCCh
Confidence 32 3 2468999999999999999998883 235899999999
Q ss_pred cceeeeecCCccceeEEEeeCCCCceE-EEeccccCCCCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEcCCceEEEc
Q 000161 201 HIRFAIDNDVRCGQWYDVSISSTGPLL-EKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIIN 279 (1988)
Q Consensus 201 ~~R~~iD~~I~~g~W~~v~~~~~~~~i-~~~~~~~~~p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~~g~li~n 279 (1988)
+.||+||++|.++.|++++...+.+.- ...+.....|+++++||||||... .+|++|++...+...+++-
T Consensus 114 ~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~p~lrilsfDIE~~~~---------g~i~~I~~~~~~~~~v~~l 184 (786)
T 3k59_A 114 PERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRH---------GELYCIGLEGCGQRIVYML 184 (786)
T ss_dssp HHHHHHHTTCSSEEEEEEEEETTEEEEEEEEECSSCCCCCCEEEEEEEECTT---------SCEEEEEEEETTEEEEEEE
T ss_pred hheeeEecCcccceEEEEeccCCceecceEeeCCCCCCCCeEEEEEEEEcCC---------CCEEEEEecCCCCCeEEEE
Confidence 999999999999999998654321111 111212248999999999999942 2699998764333333321
Q ss_pred ccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCc
Q 000161 280 RECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGF 359 (1988)
Q Consensus 280 reivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~ 359 (1988)
.. . +. +....++.|..+++|++||.+|+++|+++|||||+|||+++||||||.+||+.||+++ .+|+
T Consensus 185 ~~----~--~~-----~~~~~~~~V~~f~~E~~lL~~f~~~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~--~lGR 251 (786)
T 3k59_A 185 GP----E--NG-----DASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPL--RLGR 251 (786)
T ss_dssp SS----C--CS-----CCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCC--CCBT
T ss_pred ec----C--CC-----CCCCCCceEEEeCCHHHHHHHHHHHHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCc--eecc
Confidence 11 0 00 0011236788999999999999999999999999999999999999999999999986 3554
Q ss_pred ccc------C--CCCc--eeeccceEechHHHHhhccCCCCCCCCHHHHHHHHcCCCCCCCCh----HHHHHHHhhChHH
Q 000161 360 QCD------K--NQGE--CRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNP----EDMVRFAKEKPQM 425 (1988)
Q Consensus 360 ~~~------~--~~g~--~~i~GRihiDl~~~vkrd~~L~~~SysL~~Va~~~LG~~K~dvd~----~~i~~~~~~~~~~ 425 (1988)
... . ..+. +.+.||+|+|+|+++++..+ ++.||+|++||+++||++|.+.++ ++|.++|.+++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~-~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~ 330 (786)
T 3k59_A 252 DNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFW-NFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPA 330 (786)
T ss_dssp TTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTC-CCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHH
T ss_pred CCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccC-CCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHH
Confidence 310 0 1122 56899999999999997533 579999999999999999987665 7899999999999
Q ss_pred HHHHHHHhhHHHHHHHHHh-ccchHhhhhhhcCCChHHHhhhhhHHHHHHHHHHHHHHCCeeccCCCCCCchhhhccccc
Q 000161 426 MASYSVSDAVATYYLYMTY-VHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLL 504 (1988)
Q Consensus 426 La~Y~l~Da~lt~~L~~Kl-v~~~i~~La~i~~l~~~~vlr~Gsg~~~E~LLm~~a~~~n~i~Pnk~~~~~~~~~~g~l~ 504 (1988)
|++||++||.+|++|+.|+ ++++++++|+++|++++++ +||+..+|+|+|++|+++|+++|++...
T Consensus 331 L~~Y~l~Da~L~~~L~~kl~ll~~~~elarl~Gi~~~~~--ggs~~~~~~lll~~~~~~~~i~P~~~~~----------- 397 (786)
T 3k59_A 331 LATYNLKNCELVTQIFHKTEIMPFLLERATVNGLPVDRH--GGSVAAFGHLYFPRMHRAGYVAPNLGEV----------- 397 (786)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCSCTTCC--CCHHHHHHHHHHHHHHHTTBCCCCTTSS-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHc--ccHHHHHHHHHHHHHHHcCeeCCCcccc-----------
Confidence 9999999999999999998 8999999999999999986 7899999999999999999999998764
Q ss_pred CCCCCCcceeeeccCccccCCCCCCccCChhHHHHHhhhhhhhhHHHHhHhcccccccccchHHHHHHHHHHHHhhccCC
Q 000161 505 ESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEP 584 (1988)
Q Consensus 505 ~setY~GG~V~~p~~GvY~~d~~~~f~~~~~~~~~l~~~~~~~l~~~~~~e~~~~~~~~~n~~~v~~~i~~~l~~l~~~p 584 (1988)
..+.|.||+|++|++|+|++
T Consensus 398 ~~~~y~Gg~V~eP~~G~y~~------------------------------------------------------------ 417 (786)
T 3k59_A 398 PPHASPGGYVMDSRPGLYDS------------------------------------------------------------ 417 (786)
T ss_dssp CCCCCCCCCBCCCCCEEESC------------------------------------------------------------
T ss_pred ccccCCCcEEeeccCCceee------------------------------------------------------------
Confidence 24679999999999999977
Q ss_pred CcccCCeEEEEeccccchHHHHhcCCCCCccccccccccccCCCCCCccccccccccccccccCCcchhhHhhhhccccc
Q 000161 585 IREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEF 664 (1988)
Q Consensus 585 ~~~~~p~V~~LDf~SLYPsII~t~NL~p~Tiv~~~~c~~c~~n~p~~~c~r~m~w~~~ge~~p~~~~ey~~i~~~l~~e~ 664 (1988)
|++|||+|||||||++|||||+|++....+ |. +.+.
T Consensus 418 -------V~~lDF~SLYPSIi~~~ni~~~t~~~~~~~-------~~------------------------------~~~~ 453 (786)
T 3k59_A 418 -------VLVLDYKSLYPSIIRTFLIDPVGLVEGMAQ-------PD------------------------------PEHS 453 (786)
T ss_dssp -------EEEEEETTHHHHHHHHHCCCHHHHHHHHHS-------CS------------------------------TTTE
T ss_pred -------EEEEEhhhccHHHHHHhCCCccccccccCC-------cc------------------------------cccc
Confidence 999999999999999999999998643210 00 0011
Q ss_pred ccCCCCCcccccccCchHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHHHHhhhhh
Q 000161 665 VDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKV 744 (1988)
Q Consensus 665 f~~~~~g~~~~~~~L~~~~q~~~lkkrl~~y~~kvy~k~~~~~~~~~r~~~icqre~~f~~~~lr~f~drR~~~K~l~K~ 744 (1988)
+++..+. .| | +..+++|.+|+.+++.|.++|+.++
T Consensus 454 ~~~~~g~---~f----------------------------------------~-~~~g~lp~~l~~l~~~R~~~K~~~~- 488 (786)
T 3k59_A 454 TEGFLDA---WF----------------------------------------S-REKHCLPEIVTNIWHGRDEAKRQGN- 488 (786)
T ss_dssp EECSTTC---EE----------------------------------------E-SSCCSHHHHHHHHHHHHHHHHHTTC-
T ss_pred ccCCCCc---eE----------------------------------------e-ecCCchHHHHHHHHHHHHHHHHhcc-
Confidence 2221110 01 1 1346999999999999998886532
Q ss_pred hhhhhHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000161 745 WKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIG 824 (1988)
Q Consensus 745 ~k~~~~~a~~~~d~~~~~e~~~~~~lyds~QlA~K~ilNS~YGy~g~~~sR~ys~e~A~~VT~~Gr~iI~~a~~lve~~G 824 (1988)
+.+|+|+|+++||+|||+|+.++||||.++|++||++||++|+.|++++|+.|
T Consensus 489 ---------------------------~~~q~AlKi~~Ns~YG~~G~~~~~~~~~~~A~~iT~~GR~~l~~~~~~ie~~g 541 (786)
T 3k59_A 489 ---------------------------KPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQG 541 (786)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHGGGSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------hHHHHhhheeeecccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 13699999999999999999999999999999999999999999999999999
Q ss_pred Ce-EEEccceeeEEcCCCCCcccccccccccccccccccccccchhhhccccchhhhhccCCccccccccccceeEEeee
Q 000161 825 KP-LELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVD 903 (1988)
Q Consensus 825 ~~-vygDTDSI~~~lp~~~pe~~~~k~~~g~k~i~~sy~~~~ln~~V~~~~tN~~y~~l~~~~~~~y~~~s~~~I~fE~D 903 (1988)
+. |||||||+||.+++....+.++ +.| +++ +..| |..|++.+.+ + .. +.+|++|+|
T Consensus 542 ~~ViYGDTDSvfv~~~~~~~~~~~~--~~g-~~l---------~~~v-----n~~~~~~~~~---~-~l--~~~i~Le~E 598 (786)
T 3k59_A 542 YDVIYGDTDSTFVWLKGAHSEEEAA--KIG-RAL---------VQHV-----NAWWAETLQK---Q-RL--TSALELEYE 598 (786)
T ss_dssp CEEEECBSSEEEEECCSCCCHHHHH--HHH-HHH---------HHHH-----HHHHHHHHHT---T-TC--CCCCCEEEE
T ss_pred CEEEEEeccceEEEcCCCCCHHHHH--HHH-HHH---------HHHH-----HHHHHhhhhh---h-cC--CCceEEEEE
Confidence 98 6999999999998732222232 234 333 3333 4444332111 1 22 345666666
Q ss_pred ceeeeeecccccccCcccccceEEEc--CCCCEEEEEeeeeccCChhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000161 904 GPYKAMILPASKEEGILIKKRYAVFN--DDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANR 981 (1988)
Q Consensus 904 g~Y~~miLp~s~~~~~~~KKRYa~~~--~dG~~~e~KG~E~kRRd~~~liK~~q~~v~~~~L~g~~lee~~~~v~~v~~~ 981 (1988)
|+|++|+||++++.+.++||||||+. .||..+++||+|++|||||+|+|++|+++++.+|.++++++.+.. +++
T Consensus 599 kvy~~~ll~t~rg~~~~~KKRYag~~~~~~~~~~~~KGle~vRrD~~~l~k~~~~~~l~~il~~~~v~~~~~~---~~~- 674 (786)
T 3k59_A 599 THFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRE---TID- 674 (786)
T ss_dssp EEESEEEECBCTTSSSBCSSCEEEEEEETTEEEEEEESSGGGCTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH---HHH-
T ss_pred EeEhhheehhccCCcccccceEEEEEecCCCCEEEEEeeEEEcCCccHHHHHHHHHHHHHHHcCCCHHHHHHH---HHH-
Confidence 99999999999999999999999974 454445999999999999999999999999999999998654433 332
Q ss_pred HHHHHHhcCCCCCchhhhhhhhhccccccChhhhCCCCChHHHHHHHHHhh---cCCCcccCCCCeeEEEEEcCCCCCCC
Q 000161 982 WLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDF---LGDTMVKDKGLRCQYIVACEPQGTPV 1058 (1988)
Q Consensus 982 ~~d~L~~~~~~~~~~eLi~~i~~~k~lsK~l~eY~~~k~~~v~~A~rl~e~---lG~~~~~~~G~~i~YVI~~~p~g~~v 1058 (1988)
+++.|+++ ++|+ ++|+|+|++++|.++.+|||.+|+|+.+. .|.+..+++|++|+|||+.++
T Consensus 675 -----~l~~g~~~-~~lv----~~k~l~k~~~~Y~~~~~phv~aa~~~~~~~~~~g~~~~~~~G~rI~YVi~~~g----- 739 (786)
T 3k59_A 675 -----KLMAGELD-ARLV----YRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNG----- 739 (786)
T ss_dssp -----HHHTTCCG-GGCC----EEEEECSCGGGCCSCCCHHHHHHHHHHHHHHHTTCCCCSTTSEEEEEEEETTE-----
T ss_pred -----HHHcCCCC-hheE----EEeeecCChHHcccCCcHHHHHHHHHHHhhhccCCCcCCCCCCEEEEEEeCCC-----
Confidence 35678887 6776 89999999999997778999999998763 375557999999999999742
Q ss_pred cccccchhhhcchHHHHHHHHHhhhcCCCCCCCccccCHHHHHHhhhhhhhheeechhhhhhc
Q 000161 1059 SERAVPVAIFETDAEIMKFYLRKWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKV 1121 (1988)
Q Consensus 1059 ~eRa~p~~if~~~~~~~~~~l~~w~~~~~~~d~~~~iD~~YYierl~~~i~ki~~iPa~lq~~ 1121 (1988)
+.|++. . +..||++|||++ |++|++.+.+
T Consensus 740 ---~~p~~~-~----------------------~~~iD~~yYi~~--------ql~p~~~~il 768 (786)
T 3k59_A 740 ---PEPLDY-Q----------------------RSPLDYEHYLTR--------QLQPVAEGIL 768 (786)
T ss_dssp ---EEEGGG-C----------------------CSCBCHHHHHHH--------THHHHHHTTG
T ss_pred ---CCChhh-c----------------------cCCCcHHHHHHH--------hhHHHHHHHH
Confidence 234431 1 247999999999 9999999875
No 6
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=100.00 E-value=4.3e-95 Score=953.52 Aligned_cols=778 Identities=16% Similarity=0.190 Sum_probs=565.4
Q ss_pred EEEEEecCCCeEEEEeCCccEEEEEecCCChHHHHHHHHHhccccceeEEEEEEeeCCCcCcCCCCCeEEEEEEEechhh
Q 000161 67 DLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQ 146 (1988)
Q Consensus 67 ~ly~~t~dG~~~~v~v~f~PYFyv~~~~~~~~~v~~~l~~~~~~~i~~ie~v~k~dl~~~nhl~g~~~~~lKl~f~~~~~ 146 (1988)
..=+++++|.++.-.+.|.|.+|+.+.++.+ ++-+||+ | ++.+++.|.+..+
T Consensus 16 ~~r~~~~~g~~~~~~~~~~p~~~~~~~~~~~--------------------~~~~~~~------g--~~~~~~~f~~~~~ 67 (903)
T 3qex_A 16 FERYIDSNGRERTREVEYKPSLFAHCPESQA--------------------TKYFDIY------G--KPCTRKLFANMRD 67 (903)
T ss_dssp EEEEECTTSCEEEEEECCCCEEEEECCTTSC--------------------CSEEETT------S--CEEEEEECSSHHH
T ss_pred EEEEecCCCcEEEEeeccCceEEEecCCccc--------------------ccceecc------C--CcccccCCCCHHH
Confidence 3345567899999899999999999877521 1123442 3 7788999998876
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhhhcccCCCCcccccccccccccCCCccceeeeecCCccceeEEEeeCCCCce
Q 000161 147 LMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPL 226 (1988)
Q Consensus 147 l~~vr~~l~~~~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~~i~~i~E~DI~~~~R~~iD~~I~~g~W~~v~~~~~~~~ 226 (1988)
.....+.... -.+++++.| +|..+|+.|.-- + .+
T Consensus 68 ~~~~~k~~~~--------------------------------~~~~~~g~~-~~~~qy~~~~~~-~-----------~i- 101 (903)
T 3qex_A 68 ASQWIKRMED--------------------------------IGLEALGMD-DFKLAYLSDTYN-Y-----------EI- 101 (903)
T ss_dssp HHHHHHHHHH--------------------------------HTCCCBSCC-SHHHHHHHHHCC-S-----------CC-
T ss_pred HHHHHHHhhc--------------------------------cCcccccCc-HHHHHHHHHHcc-c-----------cc-
Confidence 5544333331 135788888 889999888621 0 01
Q ss_pred EEEeccccCCCCceEEEEEEEEccCCCCCCCCC--CCeEEEEEEEEcCCceEEE----c------cccccc---cccccc
Q 000161 227 LEKRVDLLQRAEVHVCAFDIETTKLPLKFPDAD--YDIIMMISYMLDGQGYLII----N------RECVGE---DIEDLE 291 (1988)
Q Consensus 227 i~~~~~~~~~p~lrvLsfDIEt~s~~~~fPdp~--~D~Ii~IS~~~~~~g~li~----n------reivs~---di~~fe 291 (1988)
...++++++++|||||.. +.+||||+ .++|++||+..+.....++ + ++.... ...+-.
T Consensus 102 ------~~~~~~ir~~~~DIEv~~-~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 174 (903)
T 3qex_A 102 ------KYDHTKIRVANFDIEVTS-PDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQG 174 (903)
T ss_dssp ------CCCGGGSCEEEEEEECCC-TTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGT
T ss_pred ------ccCcccccEEEEeEEeCC-CCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeecccccccccccccccccccccc
Confidence 123789999999999986 57899998 6999999999654433222 1 111000 000011
Q ss_pred CCCCCC-CCCceEEecCCCHHHHHHHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHH-cCCCC---CcccCccc----c
Q 000161 292 YTPKPE-FEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAH-HGFKM---SEELGFQC----D 362 (1988)
Q Consensus 292 ytp~~~-~~g~f~V~~~~dE~eLL~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~-lGi~l---~~~iG~~~----~ 362 (1988)
+.+-|. .-....|..|++|++||.+|+++|+++|||||+|||+++||||||.+||+. ||+++ +..+|+.. .
T Consensus 175 ~~~~~~~~~~~v~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~ 254 (903)
T 3qex_A 175 GDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIE 254 (903)
T ss_dssp CCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEE
T ss_pred ccccccccCCCeEEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchh
Confidence 111111 112467888999999999999999999999999999999999999999998 69753 23445420 0
Q ss_pred CCCC---ceeeccceEechHHHHhhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHH
Q 000161 363 KNQG---ECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYY 439 (1988)
Q Consensus 363 ~~~g---~~~i~GRihiDl~~~vkrd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~ 439 (1988)
+..| .+.++||+|+|+|+++++..++++.||+|++||+++||++|++++ ++|.++|.++++++++||++||++|++
T Consensus 255 ~~~G~~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~-~~I~~~~~~d~~~L~~Ycl~Da~Lt~~ 333 (903)
T 3qex_A 255 NMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYD-GPISKLRESNHQRYISYNIIAVYRVLQ 333 (903)
T ss_dssp ETTEEEEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCS-SCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccH-HHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 1223 267999999999999998666677999999999999999999998 888889998999999999999999999
Q ss_pred HHHHh-ccchHhhhhhhcCCChHHHhhhhhHHHHHHHHHHHHHHCCeeccCCCCCCchhhhcccccCCCCCCcceeeecc
Q 000161 440 LYMTY-VHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLE 518 (1988)
Q Consensus 440 L~~Kl-v~~~i~~La~i~~l~~~~vlr~Gsg~~~E~LLm~~a~~~n~i~Pnk~~~~~~~~~~g~l~~setY~GG~V~~p~ 518 (1988)
|+.|+ ++++++++|+++|+++++|+ |++..+|+||+++|++.|+++|++... ..++|.||+|++|+
T Consensus 334 L~~Kl~li~~~~elArl~Gi~~~~vl--sq~~v~e~LLlr~a~~~~~iiP~~~~~-----------~~~~y~Gg~V~~p~ 400 (903)
T 3qex_A 334 IDAKRQFINLSLDMGYYAKIQIQSVF--SPIKTWDAIIFNSLKEQNKVIPQGRSH-----------PVQPYPGAFVKEPI 400 (903)
T ss_dssp HHHHHCHHHHHHHHHHHHTSCGGGGG--CHHHHHHHHHHHHHHTTTEECCCCCCC-----------CCCCCCCCCBCCCC
T ss_pred HHHHHhhHHHHHHHHHHhCCCHHHhc--chHHHHHHHHHHHHHHCCEeccCCccc-----------ccCCCCCCEEeccc
Confidence 99997 89999999999999999998 588889999999999999999998743 35689999999999
Q ss_pred CccccCCCCCCccCChhHHHHHhhhhhhhhHHHHhHhcccccccccchHHHHHHHHHHHHhhccCCCcccCCeEEEEecc
Q 000161 519 SGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVA 598 (1988)
Q Consensus 519 ~GvY~~d~~~~f~~~~~~~~~l~~~~~~~l~~~~~~e~~~~~~~~~n~~~v~~~i~~~l~~l~~~p~~~~~p~V~~LDf~ 598 (1988)
+|+|++ |++|||+
T Consensus 401 ~G~y~~-------------------------------------------------------------------v~~lDf~ 413 (903)
T 3qex_A 401 PNRYKY-------------------------------------------------------------------VMSFDLT 413 (903)
T ss_dssp CEECSS-------------------------------------------------------------------EEEEEET
T ss_pred CCceEE-------------------------------------------------------------------EEEEehh
Confidence 999977 9999999
Q ss_pred ccchHHHHhcCCCCCccccccccccccCCCCCCccccccccccccccccCCcchhhHhhhhcccccccCCCCCccccccc
Q 000161 599 AMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSKSFLD 678 (1988)
Q Consensus 599 SLYPsII~t~NL~p~Tiv~~~~c~~c~~n~p~~~c~r~m~w~~~ge~~p~~~~ey~~i~~~l~~e~f~~~~~g~~~~~~~ 678 (1988)
|||||||++|||||+|++.... .+ +++-.-.+ ..+.+.++| ....+ |
T Consensus 414 SLYPsIi~~~ni~~~T~~~~~~-----~~--------~~~~~i~~-~~~~p~~~~-----------~~~p~-g------- 460 (903)
T 3qex_A 414 SLYPSIIRQVNISPETIAGTFK-----VA--------PLHDYINA-VAERPSDVY-----------SCSPN-G------- 460 (903)
T ss_dssp THHHHHHHHHTCCGGGEEEECC-----CC--------CHHHHHTT-CSCCSCSSS-----------EECTT-S-------
T ss_pred hhchHHHHHhCcChhhcccccc-----cc--------chhccccc-ccCCCCCce-----------eeCCC-C-------
Confidence 9999999999999999986521 00 00000000 000000000 00000 0
Q ss_pred CchHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHHHHhhhhhhhhhhHHHh-----
Q 000161 679 LPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAK----- 753 (1988)
Q Consensus 679 L~~~~q~~~lkkrl~~y~~kvy~k~~~~~~~~~r~~~icqre~~f~~~~lr~f~drR~~~K~l~K~~k~~~~~a~----- 753 (1988)
..-|+...+++|.+|+.|+++|.++|+.||..+......+
T Consensus 461 -----------------------------------~~F~k~~~GiLP~iL~~Ll~~R~~~K~~mk~~~~~~~~~k~~L~~ 505 (903)
T 3qex_A 461 -----------------------------------MMYYKDRDGVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKEALHN 505 (903)
T ss_dssp -----------------------------------EEECCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -----------------------------------ceEecCCCcchHHHHHHHHHHHHHHHHHHhhccccchhhhhhccc
Confidence 0112223469999999999999999999998654211100
Q ss_pred ---hcCCh--------------------------hhHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCHHHHHH
Q 000161 754 ---ASGNS--------------------------IKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGV 804 (1988)
Q Consensus 754 ---~~~d~--------------------------~~~~e~~~~~~lyds~QlA~K~ilNS~YGy~g~~~sR~ys~e~A~~ 804 (1988)
...|| ..+++++.+..+||++|+|+|+++||+|||+|+.++||||.++|++
T Consensus 506 ~~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~d~rQ~AlKi~~NS~YG~~G~~~~r~~~~~~A~s 585 (903)
T 3qex_A 506 PNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQINRKALINGLAGALGNVWFRYYDLRNATA 585 (903)
T ss_dssp CCSSCCCCCCCCTTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTCCHHHHHH
T ss_pred ccccccCccccccccccchhhhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCHHHHHH
Confidence 01123 1234667889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHc--------C--CeEEEccceeeEEcCCCCCcc--cccccccccccccccccccccch----
Q 000161 805 VTYTGAKIIQNARLLIEKI--------G--KPLELDTDGIWCVLPGSFPEN--FTFKTKDLKKKLTISYPCVMLNV---- 868 (1988)
Q Consensus 805 VT~~Gr~iI~~a~~lve~~--------G--~~vygDTDSI~~~lp~~~pe~--~~~k~~~g~k~i~~sy~~~~ln~---- 868 (1988)
||++||++|+.+++.+++. | ..||||||||||.+|+..... .+| +.| +++ ...+|.
T Consensus 586 IT~~GR~~i~~~~~~v~~~~~~~~~~~~~~~VIYGDTDSvfV~~~~~~~~~~~~~f--~~g-~~l-----~~~i~~~~~~ 657 (903)
T 3qex_A 586 ITTFGQMALQWIERKVNEYLNEVCGTEGEAFVLYGDTDSIYVSADKIIDKVGESKF--RDT-NHW-----VDFLDKFARE 657 (903)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCEEEEETTEEEEECHHHHHHHCGGGC--SSH-HHH-----HHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCCCCCeEEEEEeCCceEEEeCCccchhhhhhh--hHH-HHH-----HHHHHHHHHH
Confidence 9999999999999999873 4 357999999999988642111 112 223 332 111222
Q ss_pred hhhccccchhhhhccCCccccccccccceeEEeeeceeee--------eecccccccCcccccceEEE--cCCCC-----
Q 000161 869 DVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKA--------MILPASKEEGILIKKRYAVF--NDDGT----- 933 (1988)
Q Consensus 869 ~V~~~~tN~~y~~l~~~~~~~y~~~s~~~I~fE~Dg~Y~~--------miLp~s~~~~~~~KKRYa~~--~~dG~----- 933 (1988)
.+ +.+.|..|++++ +|...-+.+++++.|++|.+ ++|.+ ||||||+ +.+|+
T Consensus 658 ~~-~~~i~~~~~el~-----e~~~~~~~p~~l~~E~i~~~~~gs~~~~~~l~~--------KKRYag~~~~~~g~~~~~~ 723 (903)
T 3qex_A 658 RM-EPAIDRGFREMC-----EYMNNKQHLMFMDREAIAGPPLGSKGIGGFWTG--------KKRYALNVWDMEGTRYAEP 723 (903)
T ss_dssp TH-HHHHHHHHHHHH-----HHTTCSSCCCCEEEEEEECCCTTSCCCCEEEEE--------TTEEEEEEEEETTEEEEEE
T ss_pred HH-HHhhhhHHHHHH-----HHhccCCcceeeeeeeeecCcccccccchheee--------ccceEEEEeecCCcccCCC
Confidence 22 235677777763 23333344555555699999 88865 9999996 44552
Q ss_pred EEEEEeeeeccCChhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhccccccChh
Q 000161 934 LAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLA 1013 (1988)
Q Consensus 934 ~~e~KG~E~kRRd~~~liK~~q~~v~~~~L~g~~lee~~~~v~~v~~~~~d~L~~~~~~~~~~eLi~~i~~~k~lsK~l~ 1013 (1988)
.+++||+|++|||||+++|++|+++++.+|.+.+ +++.+.+++++++ .++ ++.+||+ +.+++ +.++
T Consensus 724 kl~~kGlE~vRrd~~~~~k~~~~~~l~~ll~~~~-~~~~~yv~~~~~~------~~~--~~~~di~----~~~~~-~~l~ 789 (903)
T 3qex_A 724 KLKIMGLETQKSSTPKAVQKALKECIRRMLQEGE-ESLQEYFKEFEKE------FRQ--LNYISIA----SVSSA-NNIA 789 (903)
T ss_dssp EEEEESSGGGCTTSCHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH------GGG--SCGGGGC----EEEEC-CCTG
T ss_pred eeEEeceEEEeccchHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH------HHc--CCHHHEE----eeccc-CCHH
Confidence 3599999999999999999999999999999986 7777777766654 233 4556665 89999 6999
Q ss_pred hhCCC------CChHHHHHHHHHhhcCC--Cc-ccCCCCeeEEEEEcCCCCCCCcccccch-------hhhcchHHHHHH
Q 000161 1014 DYGEQ------KSCAVTTARRLSDFLGD--TM-VKDKGLRCQYIVACEPQGTPVSERAVPV-------AIFETDAEIMKF 1077 (1988)
Q Consensus 1014 eY~~~------k~~~v~~A~rl~e~lG~--~~-~~~~G~~i~YVI~~~p~g~~v~eRa~p~-------~if~~~~~~~~~ 1077 (1988)
+|.+. .|+||..|+......+. .. .++.|++|+||+.++|. |+.+|++.. ..|..+
T Consensus 790 ~Y~~~~~~~~~~p~hv~ga~~~n~~~~~~~~~~~~~~Gekv~~v~lk~~~--~~~~~~i~~~~~~~~p~e~~~~------ 861 (903)
T 3qex_A 790 KYDVGGFPGPKCPFHIRGILTYNRAIKGNIDAPQVVEGEKVYVLPLREGN--PFGDKCIAWPSGTEITDLIKDD------ 861 (903)
T ss_dssp GGEETTEECTTCCHHHHHHHHHHHHTTTCSSSCCCCTTSEEEEEEBCTTC--TTSSSEEEEETTSCCCHHHHHH------
T ss_pred HhCCCCCCCCCCchhHHHHHHHHHHhhcccCCCCCCCCCcceEEEEeCCC--CCCCceEeccccccCcHHHhhC------
Confidence 99863 46899877653333222 12 56899999999998643 788887642 233221
Q ss_pred HHHhhhcCCCCCCCccccCHHHHHHhhhhhhhheeechhhhhhccCCCCCcchhhhhhhhhhccccccccccHHHhhh
Q 000161 1078 YLRKWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFS 1155 (1988)
Q Consensus 1078 ~l~~w~~~~~~~d~~~~iD~~YYierl~~~i~ki~~iPa~lq~~~npv~rv~~p~w~~~~~~~~~~~~kq~~l~~~f~ 1155 (1988)
....|||+||+++ ++||++.|. .+.++...+ +..+|.+||.
T Consensus 862 -------------~~~~iD~~~~~~k--------~~~~pl~ri--------------~~~~g~~~e--~~~~~~~~~~ 902 (903)
T 3qex_A 862 -------------VLHWMDYTVLLEK--------TFIKPLEGF--------------TSAAKLDYE--KKASLFDMFD 902 (903)
T ss_dssp -------------HHHHBCHHHHHHH--------HTHHHHHHH--------------HHHHTCCSS--CCCCGGGGC-
T ss_pred -------------cccccCHHHHHHH--------hchhHHHHH--------------HHHcCCCHH--HhccHHHhcC
Confidence 2346899999999 999998886 345555555 6788888884
No 7
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=100.00 E-value=2.5e-46 Score=460.43 Aligned_cols=342 Identities=16% Similarity=0.191 Sum_probs=269.6
Q ss_pred EEEEEEEEecCCCeEEEEe-CCccEEEEEecCCChHHHHHHHHHhccccceeEEEEEEeeCCCcCcCCCCCeEEEEEEEe
Q 000161 64 SCIDLYFVSQDGSTFKSKY-KFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFD 142 (1988)
Q Consensus 64 ~~v~ly~~t~dG~~~~v~v-~f~PYFyv~~~~~~~~~v~~~l~~~~~~~i~~ie~v~k~dl~~~nhl~g~~~~~lKl~f~ 142 (1988)
..+.+||+|++|. +++.+ +|+||||+..++. +..++ +.| +++.+++|.
T Consensus 13 ~~~~~~g~~~~G~-~~v~~~~f~pyfy~~~~~~----------------------~~~~~------~~g--~~~~~i~~~ 61 (388)
T 1noy_A 13 NNIVERYIDENGK-ERTREVEYLPTMFRHCKEE----------------------SKYKD------IYG--KNCAPQKFP 61 (388)
T ss_dssp TEEEEEEECTTSC-EEEEEEECCCSEECGGGGT----------------------CSSCT------TTT--CCCCCEECS
T ss_pred CEEEEEEEcCCCC-EEEEEECCcEEEEEEcCCC----------------------cceEE------eCC--CEEEEEeCC
Confidence 5568999999998 88876 9999999965431 00122 334 567789999
Q ss_pred chhhHHHHHHHHHHHHHhhcccchhHHHHHHhhhcccCCCCcccccccccccccCCCccceeeeecCCccceeEEEeeCC
Q 000161 143 TVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISS 222 (1988)
Q Consensus 143 ~~~~l~~vr~~l~~~~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~~i~~i~E~DI~~~~R~~iD~~I~~g~W~~v~~~~ 222 (1988)
++.++.++++.++. ...++||+| +|..|+++|. .+ +|.
T Consensus 62 ~~~~~~~~~~~l~~--------------------------------~~~~v~e~~-rf~~~~~~d~--~~-g~~------ 99 (388)
T 1noy_A 62 SMKDARDWMKRMED--------------------------------IGLEALGMN-DFKLAYISDT--YG-SEI------ 99 (388)
T ss_dssp SHHHHHHHHHHHHH--------------------------------HCTTCTHHH-HHHHHHHHHH--TC-SCC------
T ss_pred CHHHHHHHHHHHHh--------------------------------cCceeccCc-HHHHHHhhhc--CC-cce------
Confidence 99999888887773 246889999 9999999987 22 342
Q ss_pred CCceEEEeccccCCCCceEEEEEEEEccCCCCCCCCCC--CeEEEEEEEEcCCce--EE--Ecccccc---------ccc
Q 000161 223 TGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADY--DIIMMISYMLDGQGY--LI--INRECVG---------EDI 287 (1988)
Q Consensus 223 ~~~~i~~~~~~~~~p~lrvLsfDIEt~s~~~~fPdp~~--D~Ii~IS~~~~~~g~--li--~nreivs---------~di 287 (1988)
...+|++++|||||||++ ++||+|+. |+|+|||++..+++. .+ ++++..+ .++
T Consensus 100 ----------~~~~p~l~vlsfDIEt~~--~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 167 (388)
T 1noy_A 100 ----------VYDRKFVRVANCDIEVTG--DKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKL 167 (388)
T ss_dssp ----------CCCGGGCCEEEEEEEECC--SSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSC
T ss_pred ----------ecCCCCeEEEEEEEEeCC--CCCCCCCCCCCeEEEEEEEEecCCeEEEEEEeeccCCCCCcccccccccc
Confidence 113799999999999998 78999975 699999999876663 22 4443222 244
Q ss_pred ccccCCCCCCCCC-ceEEecCCCHHHHHHHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHH-cCC---CCCcccCcccc
Q 000161 288 EDLEYTPKPEFEG-YFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAH-HGF---KMSEELGFQCD 362 (1988)
Q Consensus 288 ~~feytp~~~~~g-~f~V~~~~dE~eLL~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~-lGi---~l~~~iG~~~~ 362 (1988)
..|.|+++++..| .+.|..+++|++||.+|+++|+++|||||+|||+++||||||.+||+. +|+ +.+.++|+...
T Consensus 168 ~~f~~~~~~~~~~~~v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~ 247 (388)
T 1noy_A 168 DCEGGDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKS 247 (388)
T ss_dssp GGGTCCCCCHHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEE
T ss_pred ccccccccccccCCCeEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCccccccc
Confidence 5788888876554 356788999999999999999999999999999999999999999998 895 34455665310
Q ss_pred ----CCCCc---eeeccceEechHHHHhhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhH
Q 000161 363 ----KNQGE---CRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAV 435 (1988)
Q Consensus 363 ----~~~g~---~~i~GRihiDl~~~vkrd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~ 435 (1988)
+..|. +.++||+|+|+|.++++..+.+++||+|++||+++||++|.+++ ++|.++|.++++++++||++||.
T Consensus 248 ~~~~~~~g~~~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~-~~i~~~~~~~~~~l~~Y~~~D~~ 326 (388)
T 1noy_A 248 KLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYD-GPINKLRETNHQRYISYNIIDVE 326 (388)
T ss_dssp EECCGGGCSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCS-SCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ccChhhhCCcceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcH-HHHHHHHHhCHHHHHHHHHHHHH
Confidence 11232 67899999999999999434336899999999999999999976 88888888889999999999999
Q ss_pred HHHHHHHHh-ccchHhhhhhhcCCChHHHhhhhhHHHHHHHHHHHHHHCCeeccCCCCC
Q 000161 436 ATYYLYMTY-VHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQS 493 (1988)
Q Consensus 436 lt~~L~~Kl-v~~~i~~La~i~~l~~~~vlr~Gsg~~~E~LLm~~a~~~n~i~Pnk~~~ 493 (1988)
+|++|+.|+ ++++++++|+++|+++++|+ |++..+|+|||++|+++|+|+|+++..
T Consensus 327 l~~~L~~kl~~l~~~~ela~i~g~~~~~vl--~q~~~~~~lll~~~~~~~~i~P~~~~~ 383 (388)
T 1noy_A 327 SVQAIDKIRGFIDLVLSMSYYAKMPFSGVM--SPIKTWDAIIFNSLKGEHKVIPQQGSH 383 (388)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTCCGGGGG--CHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHChHHHHHHHhCccCCCHHHhC--ccHHHHHHHHHHHHHhCCEEcccCCcc
Confidence 999999998 89999999999999999998 688889999999999999999999764
No 8
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=99.94 E-value=2.6e-26 Score=294.40 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=103.9
Q ss_pred CceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEcCCceEEEcccccccccccccCCCCCCCCCceEEecCCCHHHHHHHH
Q 000161 238 EVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLW 317 (1988)
Q Consensus 238 ~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~~g~li~nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F 317 (1988)
+=++++|||||+. |+..++|++||++.. .+. .. +....+ |.+|
T Consensus 5 ~~~i~~~D~Et~~------d~~~~~~~~i~~~~~-~~~------------~~------------~~~~~~------l~~f 47 (575)
T 2py5_A 5 PRKMYSCAFETTT------KVEDCRVWAYGYMNI-EDH------------SE------------YKIGNS------LDEF 47 (575)
T ss_dssp CCCEEEEEEEECC------BTTBCCEEEEEEEES-SCT------------TC------------EEEESC------HHHH
T ss_pred cceEEEEEEEeec------CCCCCceEEEEEEeC-Cce------------EE------------EEechh------HHHH
Confidence 3469999999964 567788999998742 111 01 111122 7889
Q ss_pred HHHHHhhCCCEEEeeCcccCCHHHHHHHHHHcCCCCC-----cc----cCccccCCCCc------eeecc--ceEechHH
Q 000161 318 FAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS-----EE----LGFQCDKNQGE------CRAKF--ACHLDCFA 380 (1988)
Q Consensus 318 ~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~-----~~----iG~~~~~~~g~------~~i~G--RihiDl~~ 380 (1988)
++++..+||||+. ||. +||+.||.+|+..+|.... .. +++. ... +...| .+++|+++
T Consensus 48 i~~~~~~~~~i~~-hNl-~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~----~~~~~~~i~~~~~~k~~~~i~~~D 121 (575)
T 2py5_A 48 MAWVLKVQADLYF-HNL-KFAGAFIINWLERNGFKWSADGLPNTYNTIISRM----GQWYMIDICLGYKGKRKIHTVIYD 121 (575)
T ss_dssp HHHHHHHCCEEEE-TTH-HHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTT----CCEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHcCCEEEE-ECh-hhhHHHHHHHHHHhCcccccccccccccceeccC----CeEEEEEEEEecCCCceEEEEEEE
Confidence 9999999999554 999 9999999999999973210 01 2221 111 11123 36777777
Q ss_pred HHhhccCCCCCCCCHHHHHHHHcCC-CCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 381 WVKRDSYLPQGSQGLKAVTKAKLGY-DPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 381 ~vkrd~~L~~~SysL~~Va~~~LG~-~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
.++. + +.||+.+|+.+... .|..++++.+.+.-.+..+.++.||++||.++++++.++
T Consensus 122 s~~~---~---~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 122 SLKK---L---PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp HHHH---S---CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhh---h---hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7665 2 47999999986443 255555443321101245689999999999999999875
No 9
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.33 E-value=2e-06 Score=95.32 Aligned_cols=155 Identities=23% Similarity=0.261 Sum_probs=102.7
Q ss_pred CCCCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEcCCceEEE-cccccccccccccCCCCCCC-------CC--ceEE
Q 000161 235 QRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLII-NRECVGEDIEDLEYTPKPEF-------EG--YFKV 304 (1988)
Q Consensus 235 ~~p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~~g~li~-nreivs~di~~feytp~~~~-------~g--~f~V 304 (1988)
+..+.++++||+||++. +|..++|+.|+++.-.+|.++. -...| .|.... .| .-.+
T Consensus 8 ~l~~~~~v~iD~ETTGl-----~~~~~~IieIg~v~~~~g~i~~~f~~lv---------~P~~~i~~~~~~i~GIt~~~l 73 (186)
T 2p1j_A 8 TFGDATFVVLDFETTGL-----DPQVDEIIEIGAVKIQGGQIVDEYHTLI---------KPSREISRKSSEITGITQEML 73 (186)
T ss_dssp -----CEEEEEEEESCS-----CTTTCCEEEEEEEEEETTEEEEEEEEEC---------BCSSCCCHHHHHHHCCCHHHH
T ss_pred cCcCCCEEEEEEECCCC-----CCCCCeEEEEEEEEEECCEEEEEEEEEE---------CcCCCCCHHHhhhcCCCHHHH
Confidence 34567899999999974 3556899999987533443320 00111 011100 11 0012
Q ss_pred ecCCCHHHHHHHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhh
Q 000161 305 TNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKR 384 (1988)
Q Consensus 305 ~~~~dE~eLL~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkr 384 (1988)
...++..+.+.+|.+++.. .+++|||+ .||++||...+..+|++.. ....+|++.+.++
T Consensus 74 ~~~~~~~~v~~~~~~~l~~---~~lv~hn~-~fD~~~L~~~~~~~g~~~~-----------------~~~~iDt~~l~~~ 132 (186)
T 2p1j_A 74 ENKRSIEEVLPEFLGFLED---SIIVAHNA-NFDYRFLRLWIKKVMGLDW-----------------ERPYIDTLALAKS 132 (186)
T ss_dssp TTCCBHHHHHHHHHHHSSS---CEEEETTH-HHHHHHHHHHHHHHHCCCC-----------------CCCEEEHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHCC---CEEEEECc-HHHHHHHHHHHHHcCCCCC-----------------CCCEEeHHHHHHH
Confidence 3446788999999999864 69999999 8999999999998888632 0135788888776
Q ss_pred ccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 385 DSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 385 d~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
-. ..++++|+++++. +|..... ....+.||..|..|+.++
T Consensus 133 ~~--~~~~~~L~~l~~~-~gi~~~~-----------------~H~Al~Da~~t~~l~~~l 172 (186)
T 2p1j_A 133 LL--KLRSYSLDSVVEK-LGLGPFR-----------------HHRALDDARVTAQVFLRF 172 (186)
T ss_dssp HT--CCSCCSHHHHHHH-TTCCSTT-----------------CCHHHHHHHHHHHHHHHH
T ss_pred Hh--hcCCCCHHHHHHH-cCCCCCC-----------------CcCHHHHHHHHHHHHHHH
Confidence 43 4578999999996 7764321 245688999999999876
No 10
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.24 E-value=5e-06 Score=95.53 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhC-CCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccC---
Q 000161 312 ELLRLWFAHMQEVK-PGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSY--- 387 (1988)
Q Consensus 312 eLL~~F~~~I~~~D-PDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~--- 387 (1988)
+++..|.+++.... +.++||||+..||++||...+..+|++.. . ...++|++.+.++-..
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~-------~---------~~~~iDt~~l~~~~~~~~~ 161 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLP-------R---------DTVCLDTLPALRGLDRAHS 161 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCC-------T---------TCEEEEHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCC-------C---------CCEEEEHHHHHHHHHhccC
Confidence 56667777777654 48999999999999999999999887531 0 1246888877665320
Q ss_pred -----CCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHhccchHhhhhhhcCCChHH
Q 000161 388 -----LPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDE 462 (1988)
Q Consensus 388 -----L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Klv~~~i~~La~i~~l~~~~ 462 (1988)
....+|+|+++++.++|..... ++..+.||.+|..|+.++ ..-.+++..-.+.++.+
T Consensus 162 p~~~~p~~~~~~L~~l~~~~~gi~~~~-----------------~H~Al~Da~~ta~l~~~l-~~~~~~~~~~~~~~~~~ 223 (238)
T 1y97_A 162 HGTRARGRQGYSLGSLFHRYFRAEPSA-----------------AHSAEGDVHTLLLIFLHR-AAELLAWADEQARGWAH 223 (238)
T ss_dssp ---------CCSHHHHHHHHHSSCCC--------------------CHHHHHHHHHHHHHHT-HHHHHHHHHHHCEEGGG
T ss_pred ccccCCCCCCCCHHHHHHHHhCCCCcc-----------------CccHHHHHHHHHHHHHHH-HHHHHHHHHhcCCchhh
Confidence 1237899999999768864321 356788999999999986 23334444444555544
Q ss_pred H
Q 000161 463 V 463 (1988)
Q Consensus 463 v 463 (1988)
+
T Consensus 224 i 224 (238)
T 1y97_A 224 I 224 (238)
T ss_dssp C
T ss_pred c
Confidence 4
No 11
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.08 E-value=3.1e-06 Score=97.99 Aligned_cols=102 Identities=21% Similarity=0.172 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhh-CCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhcc---
Q 000161 311 IELLRLWFAHMQEV-KPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDS--- 386 (1988)
Q Consensus 311 ~eLL~~F~~~I~~~-DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~--- 386 (1988)
.+++..|.+++... .|.++||||+..||++||..-++.+|++.. ..+..++|++..++.-.
T Consensus 102 ~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~---------------~~~~~~iDtl~l~r~l~~~~ 166 (242)
T 3mxm_B 102 DNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP---------------LDGTFCVDSIAALKALEQAS 166 (242)
T ss_dssp HHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT---------------TTTCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCC---------------ccCCeEeehHHHHHHHHhhc
Confidence 47899999999874 347999999889999999999999887631 01235789888776421
Q ss_pred C----CCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 387 Y----LPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 387 ~----L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+ ...++|+|+++++.++|..... ++-.+.||.+|.+|+.++
T Consensus 167 ~p~~~~~~~~~~L~~l~~~~~gi~~~~-----------------~H~Al~Da~ata~l~~~~ 211 (242)
T 3mxm_B 167 SPSGNGSRKSYSLGSIYTRLYWQAPTD-----------------SHTAEGDDLTLLSICQWK 211 (242)
T ss_dssp CC------CCCSHHHHHHHHHSSCCSS-----------------TTSHHHHHHHHHHHHTSS
T ss_pred CccccCCCCCcCHHHHHHHHhCCCCCC-----------------CcChHHHHHHHHHHHHHH
Confidence 1 1247999999998888875432 133578999999998876
No 12
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=97.98 E-value=1.2e-05 Score=95.93 Aligned_cols=102 Identities=21% Similarity=0.181 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhC-CCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhh---cc
Q 000161 311 IELLRLWFAHMQEVK-PGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKR---DS 386 (1988)
Q Consensus 311 ~eLL~~F~~~I~~~D-PDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkr---d~ 386 (1988)
.+++..|.+++...+ |.++||||+..||++||..-+.++|+... . .+..++|.+..++. ..
T Consensus 102 ~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~----~-----------~~~~~iDTL~l~r~L~r~~ 166 (314)
T 3u3y_B 102 DNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP----L-----------DGTFCVDSIAALKALEQAS 166 (314)
T ss_dssp HHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT----T-----------TTCEEEEHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCC----C-----------CCceEEeHHHHHHHHHHHh
Confidence 588999999998743 46999999889999999999999887631 0 13357788876652 11
Q ss_pred CC----CCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 387 YL----PQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 387 ~L----~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+. +.++|+|++++++++|.....- +-.+.||.+|..|+.++
T Consensus 167 ~P~~~~~~~~~~L~~L~~~l~gi~~~~a-----------------HrAl~DA~ata~lf~~l 211 (314)
T 3u3y_B 167 SPSGNGSRKSYSLGSIYTRLYWQAPTDS-----------------HTAEGHVLTLLSICQWK 211 (314)
T ss_dssp -------CCCCSHHHHHHHHHSSCCSCS-----------------SSHHHHHHHHHHHHHSS
T ss_pred CccccccCCCCCHHHHHHHhcCCCCCCC-----------------CCHHHHHHHHHHHHHHH
Confidence 11 1379999999998889765332 23467999999998876
No 13
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.88 E-value=0.00011 Score=84.30 Aligned_cols=163 Identities=21% Similarity=0.226 Sum_probs=105.4
Q ss_pred CCCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEcC---CceEEEcccccccccccccCCCCC--C-------CCCc--
Q 000161 236 RAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDG---QGYLIINRECVGEDIEDLEYTPKP--E-------FEGY-- 301 (1988)
Q Consensus 236 ~p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~---~g~li~nreivs~di~~feytp~~--~-------~~g~-- 301 (1988)
..+..+++||+||++. +|..|+|+.|+++.-. +|.+.+.... ..-..|.+ . ..|-
T Consensus 34 l~~~~~vviD~ETTGl-----~~~~~~IieIgav~~~~~~~g~i~~~~~f------~~~v~P~~~~~i~~~~~~i~GIt~ 102 (235)
T 3v9w_A 34 FRGFYPVVIDVETAGF-----NAKTDALLEIAAITLKMDEQGWLMPDTTL------HFHVEPFVGANLQPEALAFNGIDP 102 (235)
T ss_dssp TTTEEEEEEEEEESSS-----CTTTBCEEEEEEEEEEECTTSCEEEEEEE------EEEBCCCTTCBCCHHHHHHHCCCT
T ss_pred ccCCcEEEEEEeCCCC-----CCCCCeEEEEEEEEEEEcCCCcccccceE------EEEECCCCCCCCCHHHHHHhCCCH
Confidence 5677899999999985 3567999999987421 3432110000 00001100 0 0010
Q ss_pred -eEEecCCCHHHHHHHHHHHHHhh------CCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccce
Q 000161 302 -FKVTNVNNEIELLRLWFAHMQEV------KPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFAC 374 (1988)
Q Consensus 302 -f~V~~~~dE~eLL~~F~~~I~~~------DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRi 374 (1988)
..+....+..+.+..|.+++.++ ...++||||+ .||++||...+..+|++.. .+. ...
T Consensus 103 e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~-~fD~~~L~~~~~~~g~~~~---p~~-----------~~~ 167 (235)
T 3v9w_A 103 NDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNA-NFDHSFMMAAAERASLKRN---PFH-----------PFA 167 (235)
T ss_dssp TCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTT-HHHHHHHHHHHHHTTCCCC---CEE-----------EEE
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeCh-HHHHHHHHHHHHHcCCCCC---CCC-----------CCc
Confidence 01223457888999999999864 3469999998 8999999998999888521 000 124
Q ss_pred EechHHHHhhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 375 HLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 375 hiDl~~~vkrd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
.+|++.+.+.- + ++++|+++++. +|..... .-..+.+.||.+|..|+.++
T Consensus 168 ~~Dt~~la~~~-~---p~~~L~~l~~~-~gi~~~~---------------~~~H~Al~DA~~ta~l~~~l 217 (235)
T 3v9w_A 168 TFDTAALAGLA-L---GQTVLSKACQT-AGMDFDS---------------TQAHSALYDTERTAVLFCEI 217 (235)
T ss_dssp EEEHHHHHHHH-H---SCCSHHHHHHH-HTCCCCT---------------TTTTCHHHHHHHHHHHHHHH
T ss_pred EEEhHHHHHHH-h---CCCCHHHHHHH-cCCCCCC---------------CCCcChHHHHHHHHHHHHHH
Confidence 68999888763 2 46899999996 5643211 11356788999999999886
No 14
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.79 E-value=0.00023 Score=81.14 Aligned_cols=165 Identities=23% Similarity=0.232 Sum_probs=104.3
Q ss_pred CCCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEcC---CceEE-E--cccccc----cccccccCCCCCCCCCce---
Q 000161 236 RAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDG---QGYLI-I--NRECVG----EDIEDLEYTPKPEFEGYF--- 302 (1988)
Q Consensus 236 ~p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~---~g~li-~--nreivs----~di~~feytp~~~~~g~f--- 302 (1988)
..+.++++||+||++. +|..++|+.|+++.-. +|.+. . -...|. ..|..+. -...|-.
T Consensus 26 ~~~~~~vviD~ETTGl-----~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~----~~ihGIt~e~ 96 (224)
T 2f96_A 26 FRGYLPVVVDVETGGF-----NSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAA----LEFTGIKLDH 96 (224)
T ss_dssp TTTEEEEEEEEEESSS-----CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHH----HHHHTCCTTC
T ss_pred ccCCcEEEEEeeCCCC-----CCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHH----HHHhCCCHHH
Confidence 5677899999999984 3456899999977422 44421 0 000110 0110000 0000100
Q ss_pred EEecCCCHHHHHHHHHHHHHhh------CCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEe
Q 000161 303 KVTNVNNEIELLRLWFAHMQEV------KPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHL 376 (1988)
Q Consensus 303 ~V~~~~dE~eLL~~F~~~I~~~------DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihi 376 (1988)
.+.......+.+..|.++|.++ +..++||||+ .||++||...+..+|+... .+. ....+
T Consensus 97 ~v~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~-~FD~~fL~~~~~~~g~~~~---p~~-----------~~~~i 161 (224)
T 2f96_A 97 PLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNS-SFDLGFLNAAVARTGIKRN---PFH-----------PFSSF 161 (224)
T ss_dssp TTCCCBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTH-HHHHHHHHHHHHHHTCCCC---CEE-----------EEEEE
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhhcccCCCEEEEeCh-hhhHHHHHHHHHHcCCCcC---Ccc-----------cccee
Confidence 0223457889999999999864 3468999999 8999999999998887520 000 12578
Q ss_pred chHHHHhhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 377 DCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 377 Dl~~~vkrd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
|++.+.++- + ++++|++++++ +|..... .-.+..+.||.+|..|+.++
T Consensus 162 Dt~~l~~~~-~---~~~~L~~l~~~-~gi~~~~---------------~~~H~Al~Da~~ta~l~~~l 209 (224)
T 2f96_A 162 DTATLAGLA-Y---GQTVLAKACQA-AGMEFDN---------------REAHSARYDTEKTAELFCGI 209 (224)
T ss_dssp EHHHHHHHH-H---SCCSHHHHHHH-TTCCCCT---------------TSCCCHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHH-c---CCCCHHHHHHH-cCCCcCC---------------CCCCChHHHHHHHHHHHHHH
Confidence 998888763 2 46899999996 6764210 00134578999999998876
No 15
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=97.71 E-value=0.00026 Score=78.70 Aligned_cols=165 Identities=16% Similarity=0.100 Sum_probs=102.7
Q ss_pred CceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEcCCceEEEcccccccccccccCCCCCCC-------CC--ceEEecCC
Q 000161 238 EVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEF-------EG--YFKVTNVN 308 (1988)
Q Consensus 238 ~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~~g~li~nreivs~di~~feytp~~~~-------~g--~f~V~~~~ 308 (1988)
..++++||+||++....-|....++|+.|+++.-.+|.++ +.. ...-..|.... .| .-.+...+
T Consensus 8 ~~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~------~~~-f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~ 80 (194)
T 2gui_A 8 ITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT------GNN-FHVYLKPDRLVDPEAFGVHGIADEFLLDKP 80 (194)
T ss_dssp CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEEC------SCC-EEEECCCSSCCCHHHHHHHCCCHHHHTTSC
T ss_pred cCCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEe------ccE-EEEEECcCCcCCHHHHHhhCcCHHHHhCCC
Confidence 3678999999998531111013589999997742233221 000 00001121111 01 00123346
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCC
Q 000161 309 NEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYL 388 (1988)
Q Consensus 309 dE~eLL~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L 388 (1988)
...+++..|.+++.. .++||||+ .||+++|...+..+|++... +. .....+|++.+.++-.
T Consensus 81 ~~~~v~~~~~~~l~~---~~lv~hn~-~fD~~~L~~~~~~~g~~~p~---~~----------~~~~~iDt~~l~~~~~-- 141 (194)
T 2gui_A 81 TFAEVADEFMDYIRG---AELVIHNA-AFDIGFMDYEFSLLKRDIPK---TN----------TFCKVTDSLAVARKMF-- 141 (194)
T ss_dssp CHHHHHHHHHHHHTT---SEEEETTH-HHHHHHHHHHHHHTCSCCCC---GG----------GTSEEEEHHHHHHHHS--
T ss_pred CHHHHHHHHHHHHCC---CeEEEEch-HHhHHHHHHHHHHcCCCCcc---cc----------ccCceeeHHHHHHHHc--
Confidence 778899999999965 58999999 89999999999999886310 00 0135789988877632
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 389 PQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 389 ~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
|..+++|++++++ ||.....- -.+-.+.||.+|..|+.++
T Consensus 142 p~~~~~L~~l~~~-~gi~~~~~---------------~~H~Al~Da~~ta~l~~~l 181 (194)
T 2gui_A 142 PGKRNSLDALCAR-YEIDNSKR---------------TLHGALLDAQILAEVYLAM 181 (194)
T ss_dssp TTSCCSHHHHHHH-TTCCCTTC---------------SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHH-cCcCCCCC---------------CCCChHHHHHHHHHHHHHH
Confidence 3457899999996 77643210 0133578999999999886
No 16
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=97.70 E-value=0.0003 Score=78.71 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=105.7
Q ss_pred CCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEE-cC-CceEEE-cccccccccccccCCCCCC----CCC--ceEEecC
Q 000161 237 AEVHVCAFDIETTKLPLKFPDADYDIIMMISYML-DG-QGYLII-NRECVGEDIEDLEYTPKPE----FEG--YFKVTNV 307 (1988)
Q Consensus 237 p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~-~~-~g~li~-nreivs~di~~feytp~~~----~~g--~f~V~~~ 307 (1988)
+.-++++||+||++.... +.+..|+|+.|+++. +. +|.++. -...|... .+.+-++ ..| .-.+...
T Consensus 8 ~~~~~vviD~ETTGl~~~-~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~----~~~~i~~~~~~i~GIt~~~l~~~ 82 (204)
T 1w0h_A 8 YYDYICIIDFEATCEEGN-PPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPE----INTQLSDFCISLTGITQDQVDRA 82 (204)
T ss_dssp SSSEEEECCCEECCCTTC-CTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCS----SSCSCCHHHHHHHCCCHHHHHTS
T ss_pred CcCEEEEEEEecCCcCCC-CCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCC----CCCccCHHHHHHhCCCHHHHhCC
Confidence 345688999999985321 113568999999764 32 444320 00111000 0000000 011 0013345
Q ss_pred CCHHHHHHHHHHHHHhhC----CCEEEeeCcccCCHH-HHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHH
Q 000161 308 NNEIELLRLWFAHMQEVK----PGIYVTYNGDYFDWP-FLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWV 382 (1988)
Q Consensus 308 ~dE~eLL~~F~~~I~~~D----PDIIvGYNgd~FDlP-yL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~v 382 (1988)
++..+.+..|.+++.... +.+++|||+ .||++ ||..-+..+|++... + ....+|+..++
T Consensus 83 ~~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~-~fD~~~~L~~~~~~~~~~~p~------------~---~~~~~dt~~l~ 146 (204)
T 1w0h_A 83 DTFPQVLKKVIDWMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPP------------F---AKKWINIRKSY 146 (204)
T ss_dssp BCHHHHHHHHHHHHHHTTBTTTBCEEEEESS-TTTTHHHHHHHHHHHTCCCCG------------G---GSEEEEHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCcEEEEEEC-cchHHHHHHHHHHHhCCCCcc------------c---ccceEEHHHHH
Confidence 688899999999999863 457999999 69997 999989888886320 0 12568888887
Q ss_pred hhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 383 KRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 383 krd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
++-...+..+++|++++++ +|.....- .+-.+.||..|..|+.++
T Consensus 147 ~~~~~~~~~~~~L~~l~~~-~gi~~~~~----------------~H~Al~Da~~ta~l~~~l 191 (204)
T 1w0h_A 147 GNFYKVPRSQTKLTIMLEK-LGMDYDGR----------------PHCGLDDSKNIARIAVRM 191 (204)
T ss_dssp HHHHTCCGGGCSHHHHHHH-TTCCCCSC----------------TTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCccchHHHHHHH-cCCCCCCC----------------ccCcHHHHHHHHHHHHHH
Confidence 7643222346999999986 77643210 123577999999998875
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=97.60 E-value=0.00048 Score=86.94 Aligned_cols=166 Identities=17% Similarity=0.083 Sum_probs=102.0
Q ss_pred CCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEE-cCCceEEEcccccccccccccCCCCCCC---------CCce--EE
Q 000161 237 AEVHVCAFDIETTKLPLKFPDADYDIIMMISYML-DGQGYLIINRECVGEDIEDLEYTPKPEF---------EGYF--KV 304 (1988)
Q Consensus 237 p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~-~~~g~li~nreivs~di~~feytp~~~~---------~g~f--~V 304 (1988)
.+.++++||+||++. +|..|+|+.|+++. +.+|..+ ++....+ ..|.... .|-. .+
T Consensus 7 ~~~~~vv~DlETTGl-----~p~~d~IIEIgaV~vd~~g~ii------~~~f~~l-VkP~~~ilp~p~a~~IhGIT~e~l 74 (482)
T 2qxf_A 7 QQSTFLFHDYETFGT-----HPALDRPAQFAAIRTDSEFNVI------GEPEVFY-CKPADDYLPQPGAVLITGITPQEA 74 (482)
T ss_dssp CCCEEEEEEEEESSS-----CTTTSCEEEEEEEEECTTSCBC------SCCEEEE-BCCCTTCCCCHHHHHHHCCCHHHH
T ss_pred CCCCEEEEEEECCCC-----CCCCCeEEEEEEEEEECCCeEE------eeeeEEE-ECCCCCCCCCHHHHHHhCCCHHHH
Confidence 356789999999985 35679999999774 4344321 1100000 0111111 1100 01
Q ss_pred e-cCCCHHHHHHHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHh
Q 000161 305 T-NVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVK 383 (1988)
Q Consensus 305 ~-~~~dE~eLL~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vk 383 (1988)
. ....|.+++..|.+++.+ ...++||||+..||++||..-+..+|++.+.. .|. .|...+|+..+++
T Consensus 75 ~~ap~~~~evl~~f~~~l~~-~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~-~w~----------~~~~~iDtl~l~r 142 (482)
T 2qxf_A 75 RAKGENEAAFAARIHSLFTV-PKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW-SWQ----------HDNSRWDLLDVMR 142 (482)
T ss_dssp HHHCBCHHHHHHHHHHHHTS-TTEEEEESSTTTTHHHHHHHHHHHTTSCSSGG-GTG----------GGCEEEEHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHcC-CCCEEEEECCHHHHHHHHHHHHHHhCCCcccc-ccc----------cCCceeeHHHHHH
Confidence 1 123578999999999985 34699999988999999999999998864310 111 1345567766655
Q ss_pred hcc-------CC-----CCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 384 RDS-------YL-----PQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 384 rd~-------~L-----~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
.-. .. ..++|+|++++++ +|..... +.-.+.||.+|..|+.++
T Consensus 143 ~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~-~Gi~~~~-----------------aHrAL~DA~aTa~l~~~l 197 (482)
T 2qxf_A 143 ACYALRPEGINWPENDDGLPSFRLEHLTKA-NGIEHSN-----------------AHDAMADVYATIAMAKLV 197 (482)
T ss_dssp HHHHHCCTTSCCCBCTTSSBCCCHHHHHHH-TTCCCC--------------------CTTHHHHHHHHHHHHH
T ss_pred HHHHhCcccccCcccccCCCCCCHHHHHHH-cCCCCCC-----------------CCCHHHHHHHHHHHHHHH
Confidence 421 00 2368999999985 6754311 133567999999998765
No 18
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=97.46 E-value=0.00083 Score=80.02 Aligned_cols=170 Identities=15% Similarity=0.097 Sum_probs=105.6
Q ss_pred CCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEE-cC-CceEEE-cccccccccccccCCCCCC----CCC--ceEEecC
Q 000161 237 AEVHVCAFDIETTKLPLKFPDADYDIIMMISYML-DG-QGYLII-NRECVGEDIEDLEYTPKPE----FEG--YFKVTNV 307 (1988)
Q Consensus 237 p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~-~~-~g~li~-nreivs~di~~feytp~~~----~~g--~f~V~~~ 307 (1988)
+.-.+++||+||++.... +++..|+|+.|+++. ++ +|.++- -...|... .+.+-++ ..| .-.|...
T Consensus 76 ~~~~~vviD~ETTGl~~~-~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~----~~~~i~~~~~~ihGIt~e~v~~a 150 (299)
T 1zbh_A 76 YYDYICIIDFEATCEEGN-PPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPE----INTQLSDFCISLTGITQDQVDRA 150 (299)
T ss_dssp SCSEEEEECCEECCCTTC-CTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCS----SSCSCCHHHHHHHCCCHHHHHTS
T ss_pred CCceEEEEEeecccCCCC-CCCCCCceEEEEEEEEECCCCeEeeeeeeeecCC----CCCCCCHHHHHHhCCCHHHHhcC
Confidence 344678999999985422 345679999999774 43 343320 00011000 0000000 011 0013345
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEeeCcccCCHH-HHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHH
Q 000161 308 NNEIELLRLWFAHMQEV----KPGIYVTYNGDYFDWP-FLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWV 382 (1988)
Q Consensus 308 ~dE~eLL~~F~~~I~~~----DPDIIvGYNgd~FDlP-yL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~v 382 (1988)
++..+++..|.+++... ..+++||||+ .||++ ||..-+..+|++... + .+..+|+...+
T Consensus 151 p~~~evl~~f~~~l~~~~~~~~~~~lVahn~-~fD~~~fL~~~~~~~g~~~p~------------~---~~~~iDt~~l~ 214 (299)
T 1zbh_A 151 DTFPQVLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPP------------F---AKKWINIRKSY 214 (299)
T ss_dssp BCHHHHHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCG------------G---GSEEEEHHHHH
T ss_pred CCHHHHHHHHHHHHhhcccCCCCcEEEEEeC-HHHHHHHHHHHHHHcCCCCCc------------c---cchHHHHHHHH
Confidence 68899999999999986 2369999999 79999 999988888876310 0 12467887666
Q ss_pred hhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 383 KRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 383 krd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+.....+.++++|++++++ +|.....- .+-.+.||.+|..|+.++
T Consensus 215 ~~~~~~~~~~~~L~~l~~~-~gi~~~g~----------------~H~Al~DA~ata~l~~~l 259 (299)
T 1zbh_A 215 GNFYKVPRSQTKLTIMLEK-LGMDYDGR----------------PNCGLDDSKNIARIAVRM 259 (299)
T ss_dssp HHHHTCCGGGCSHHHHHHH-TTCCCCSC----------------TTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCccHHHHHHH-cCCCCCCC----------------CCChHHHHHHHHHHHHHH
Confidence 5532232234999999986 77643210 133578999999998875
No 19
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=97.22 E-value=0.0011 Score=80.43 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=105.2
Q ss_pred CCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEE-cC-CceEEE-cccccccccccccCCCCCC----CCC--ceEEecC
Q 000161 237 AEVHVCAFDIETTKLPLKFPDADYDIIMMISYML-DG-QGYLII-NRECVGEDIEDLEYTPKPE----FEG--YFKVTNV 307 (1988)
Q Consensus 237 p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~-~~-~g~li~-nreivs~di~~feytp~~~----~~g--~f~V~~~ 307 (1988)
+.-.+++||+||++.... +++..|+||.|+++. ++ +|.++- -...|... .+.+-++ ..| .-.|...
T Consensus 126 ~~~~~vviD~ETTGl~~~-~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~----~~~~I~~~~t~ihGIT~e~v~~a 200 (349)
T 1zbu_A 126 YYDYICIIDFEATCEEGN-PPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPE----INTQLSDFCISLTGITQDQVDRA 200 (349)
T ss_dssp CCSEEEECCCEECCCTTC-CTTCCCCEEECCEEEEETTTTEEEEEECCBEECS----SSCSCCHHHHHHHCCCHHHHHTS
T ss_pred cCCeEEEEEEecCCCCCc-CCCCCCeEEEEEEEEEECCCceEeEEEEEEECCC----CCCCCCHHHHHHhCCCHHHHhCC
Confidence 345778999999985422 346679999999764 43 344321 00111000 0000000 011 0012334
Q ss_pred CCHHHHHHHHHHHHHhhC----CCEEEeeCcccCCHH-HHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHH
Q 000161 308 NNEIELLRLWFAHMQEVK----PGIYVTYNGDYFDWP-FLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWV 382 (1988)
Q Consensus 308 ~dE~eLL~~F~~~I~~~D----PDIIvGYNgd~FDlP-yL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~v 382 (1988)
.+..+++..|.+++...+ .+++||||+ .||++ ||..-+..+|+.... + ....+|+..++
T Consensus 201 p~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa-~FD~~~fL~~~~~~~g~~~p~------------~---~~~~iDt~~l~ 264 (349)
T 1zbu_A 201 DTFPQVLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPP------------F---AKKWINIRKSY 264 (349)
T ss_dssp EEHHHHHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCG------------G---GSEEEEHHHHH
T ss_pred CCHHHHHHHHHHHHhcccccCCCcEEEEECc-HhhHHHHHHHHHHHhCCCCcc------------c---cchHHHHHHHH
Confidence 578899999999998862 369999999 69999 999988888875310 0 12467887766
Q ss_pred hhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 383 KRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 383 krd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+....++.++++|++++++ +|.....- .+-.+.||.+|..|+.++
T Consensus 265 ~~~~~~~~~~~~L~~l~~~-~gi~~~g~----------------~HrAl~DA~ata~ll~~l 309 (349)
T 1zbu_A 265 GNFYKVPRSQTKLTIMLEK-LGMDYDGR----------------PHCGLDDSKNIARIAVRM 309 (349)
T ss_dssp HHHHTCCGGGGSHHHHHHH-TTCCCCSC----------------TTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCHHHHHHH-cCCCCCCC----------------CCCHHHHHHHHHHHHHHH
Confidence 6532232234999999986 77643210 133578999999998875
No 20
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.72 E-value=0.0026 Score=70.63 Aligned_cols=154 Identities=17% Similarity=0.125 Sum_probs=86.7
Q ss_pred CceEEEEEEEEccCCCCCCCCCC-CeEEEEEEEEcCCceEEEcccccc--cccccccCCCCCCCCCc--eEEecCCCHHH
Q 000161 238 EVHVCAFDIETTKLPLKFPDADY-DIIMMISYMLDGQGYLIINRECVG--EDIEDLEYTPKPEFEGY--FKVTNVNNEIE 312 (1988)
Q Consensus 238 ~lrvLsfDIEt~s~~~~fPdp~~-D~Ii~IS~~~~~~g~li~nreivs--~di~~feytp~~~~~g~--f~V~~~~dE~e 312 (1988)
+.+++++|+||++.. |.. ++|+.|+++ +.+|..+.. ..|. ..|.++. ....|- -.+...++..+
T Consensus 4 ~~~~vviD~ETTGl~-----~~~~~~iiei~~v-~~~g~~i~~-~lV~P~~~i~~~~----~~i~GIt~~~l~~a~~~~~ 72 (189)
T 1wlj_A 4 SREVVAMDCEMVGLG-----PHRESGLARCSLV-NVHGAVLYD-KFIRPEGEITDYR----TRVSGVTPQHMVGATPFAV 72 (189)
T ss_dssp --CEEEEEEEEEEET-----TTTEEEEEEEEEE-CTTCCEEEE-EEEECSSCEEECC----HHHHCCCHHHHTTCEEHHH
T ss_pred CCeEEEEEeECcCcC-----CCCCceEEEEEEE-eCCCCEEEe-eEecCCCCCCccc----cCCCCCCHHHHcCCCCHHH
Confidence 457899999999852 334 467789875 345543311 1110 0111100 000110 01223456788
Q ss_pred HHHHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHH--hhccCCC-
Q 000161 313 LLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWV--KRDSYLP- 389 (1988)
Q Consensus 313 LL~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~v--krd~~L~- 389 (1988)
++.+|.+++.. .++||||.. ||+.||..- . + ....+|+..+. ++...+|
T Consensus 73 v~~~~~~~l~~---~~lV~hn~~-fD~~~L~~~-----~----------~---------~~~~idt~~~~~~~~~~~~p~ 124 (189)
T 1wlj_A 73 ARLEILQLLKG---KLVVGHDLK-HDFQALKED-----M----------S---------GYTIYDTSTDRLLWREAKLDH 124 (189)
T ss_dssp HHHHHHHHHTT---SEEEESSHH-HHHHHTTCC-----C----------T---------TCEEEEGGGCHHHHHHHTC--
T ss_pred HHHHHHHHHCC---CEEEECCcH-HHHHHHHHh-----C----------C---------CCceechHhhhhhhhcccCCC
Confidence 99999999963 699999985 999998321 0 0 11356666542 2211122
Q ss_pred CCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 390 QGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 390 ~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
..+++|+++++.+||.....- .-..-.+.||.+|..|+.++
T Consensus 125 ~~~~~L~~l~~~~lgi~~~~~--------------~~~H~Al~Da~ata~l~~~l 165 (189)
T 1wlj_A 125 CRRVSLRVLSERLLHKSIQNS--------------LLGHSSVEDARATMELYQIS 165 (189)
T ss_dssp ---CCHHHHHHHHTCCCCSCC--------------TTCCCHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHcCCCCCCC--------------CCCcCcHHHHHHHHHHHHHH
Confidence 368999999998788643210 00134578999999999876
No 21
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=96.68 E-value=0.0051 Score=70.10 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=93.3
Q ss_pred ceEEEEEEEEccCCCCCCCCCC--CeEEEEEEEE-cCC-ceEEE-cccccccccccccCCCCCC----CCC--ceEEecC
Q 000161 239 VHVCAFDIETTKLPLKFPDADY--DIIMMISYML-DGQ-GYLII-NRECVGEDIEDLEYTPKPE----FEG--YFKVTNV 307 (1988)
Q Consensus 239 lrvLsfDIEt~s~~~~fPdp~~--D~Ii~IS~~~-~~~-g~li~-nreivs~di~~feytp~~~----~~g--~f~V~~~ 307 (1988)
-.++++|+||++.. +.. ++|+.|+++. ++. |.++. -...|... .+.+-++ ..| .-.+...
T Consensus 31 ~~~vviD~ETTGl~-----~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~----~~~~i~~~~~~ltGIt~~~v~~a 101 (224)
T 2xri_A 31 HYFLVLDFEATCDK-----PQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPV----VHPQLTPFCTELTGIIQAMVDGQ 101 (224)
T ss_dssp SEEEEECCEECCCC------CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCS----SSCSCCHHHHHHHCCCHHHHTTC
T ss_pred CeEEEEEEEcCCCC-----CCCCCcceEEEEEEEEecCCcEEeeeeeeEECCC----CCCcCCHHHHHHhCcCHHHHcCC
Confidence 36899999999853 333 4999999773 432 33210 00111000 0000000 011 0013345
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEeeCcc-------cCCHHHHH-HHHHHcCCCCCcccCccccCCCCceeeccceEech-
Q 000161 308 NNEIELLRLWFAHMQEVKPGIYVTYNGD-------YFDWPFLE-TRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDC- 378 (1988)
Q Consensus 308 ~dE~eLL~~F~~~I~~~DPDIIvGYNgd-------~FDlPyL~-~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl- 378 (1988)
++..+.+..|.+++... +++|||.. .||+.||. .-+..+|++... + ..-.+|+
T Consensus 102 ~~~~~v~~~f~~~l~~~---~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~------------~---~~~~iD~~ 163 (224)
T 2xri_A 102 PSLQQVLERVDEWMAKE---GLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVAD------------Y---FKQWINLK 163 (224)
T ss_dssp CCHHHHHHHHHHHHHHT---TTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCG------------G---GSCEEEHH
T ss_pred CCHHHHHHHHHHHHhhc---ccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcc------------c---ccceEeHH
Confidence 68899999999999974 56777775 89999854 667778886420 0 1246784
Q ss_pred --HHHHhhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 379 --FAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 379 --~~~vkrd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+...++. .++++|++++++ +|..... . +.-.+.||..|..|+.++
T Consensus 164 ~~~~~~~~~----~p~~~L~~l~~~-~gi~~~~------------~----~H~Al~DA~~ta~l~~~l 210 (224)
T 2xri_A 164 KAYSFAMGC----WPKNGLLDMNKG-LSLQHIG------------R----PHSGIDDCKNIANIMKTL 210 (224)
T ss_dssp HHHHHHHTS----CCTTTHHHHHHH-TTCCCCS------------C----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc----CCCCCHHHHHHH-cCCCCCC------------C----CcChHHHHHHHHHHHHHH
Confidence 4444431 256999999984 7754321 0 133578999999998876
No 22
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=95.99 E-value=0.0052 Score=68.32 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=64.6
Q ss_pred CCCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEE-cCCceEEEc-ccc-cccccccccCCCC------CCC-------C
Q 000161 236 RAEVHVCAFDIETTKLPLKFPDADYDIIMMISYML-DGQGYLIIN-REC-VGEDIEDLEYTPK------PEF-------E 299 (1988)
Q Consensus 236 ~p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~-~~~g~li~n-rei-vs~di~~feytp~------~~~-------~ 299 (1988)
.-+-+.+.||+||++. ||..|+|+.|++++ ++++.++.. ..+ + ..|. ++. .
T Consensus 6 ~~~~~~v~~D~ETTGL-----~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i--------~~p~~~l~~~~~~~~~ih~lt 72 (186)
T 3tr8_A 6 FSDDNLIWLDLEMTGL-----DPERDRIIEIATIVTNSHLDILAEGPAFAI--------HQPDKLLTAMDNWNTSHHTAS 72 (186)
T ss_dssp CCTTCEEEEEEEESSS-----CTTTCCEEEEEEEEECTTCCEEEECCCEEC--------CCCHHHHTTSCHHHHHHHHHT
T ss_pred CCCCcEEEEEEECCCC-----CCCCCceEEEEEEEEcCCeEEeeeeEEEEE--------eCCccccccCCcccHHHHhcc
Confidence 3456789999999985 46789999999875 333222110 000 1 0121 010 1
Q ss_pred C--ceEEecCCCHHHHHHHHHHHHHhh---CCCEEEeeCcccCCHHHHHHHHHHcC
Q 000161 300 G--YFKVTNVNNEIELLRLWFAHMQEV---KPGIYVTYNGDYFDWPFLETRAAHHG 350 (1988)
Q Consensus 300 g--~f~V~~~~dE~eLL~~F~~~I~~~---DPDIIvGYNgd~FDlPyL~~Ra~~lG 350 (1988)
| +-.+...+++.+.+.+|+++++++ +-.+++|||. .||++||.+-+..+|
T Consensus 73 GIt~~~l~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~-~FD~~FL~~~~~~~~ 127 (186)
T 3tr8_A 73 GLLERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSV-CQDRRFLSRYMPRLN 127 (186)
T ss_dssp SHHHHHHTCCCCHHHHHHHHHHHHTTTSCTTCSCEEESST-HHHHHHHHHHCHHHH
T ss_pred CCCHHHHhcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcH-HHhHHHHHHHHHHcC
Confidence 2 001224578999999999999654 2258999998 799999988765554
No 23
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=95.88 E-value=0.02 Score=75.81 Aligned_cols=153 Identities=18% Similarity=0.110 Sum_probs=89.7
Q ss_pred EEEEEEEEccCCCCCCCCCCCeEEEEEEEEcCCceEEEcccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHHHH
Q 000161 241 VCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAH 320 (1988)
Q Consensus 241 vLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~~g~li~nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~~~ 320 (1988)
+++|||||++. ++..|.|..|.+.....|... .|.| ..-.+.+..|..+
T Consensus 1 ~vv~D~ETtGl-----~~~~d~i~~iqi~~~~~~~~~-------------~~~p-------------~~i~~~l~~L~~~ 49 (698)
T 1x9m_A 1 MIVSDIEANAL-----LESVTKFHCGVIYDYSTAEYV-------------SYRP-------------SDFGAYLDALEAE 49 (698)
T ss_dssp CEEEEEEESSC-----GGGCCCEEEEEEEETTTTEEE-------------EECG-------------GGHHHHHHHHHHH
T ss_pred CEEEEcCCCCc-----CCCCCEEEEEEEEecCCCcEE-------------EECh-------------HHHHHHHHHHHHH
Confidence 47899999985 345688887776532212111 0111 1112356777777
Q ss_pred HHhhCCCEEEeeCcccCCHHHHHHHHHHc---CCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCCCHHH
Q 000161 321 MQEVKPGIYVTYNGDYFDWPFLETRAAHH---GFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKA 397 (1988)
Q Consensus 321 I~~~DPDIIvGYNgd~FDlPyL~~Ra~~l---Gi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~SysL~~ 397 (1988)
+. .-.++++||...||+.+|...+... |+.+ +....+|++-...-- .....+|+|++
T Consensus 50 l~--~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l-----------------~~~~~~DTmlaayLL-~p~~~~~~L~~ 109 (698)
T 1x9m_A 50 VA--RGGLIVFHNGHKYDVPALTKLAKLQLNREFHL-----------------PRENCIDTLVLSRLI-HSNLKDTDMGL 109 (698)
T ss_dssp HH--TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCC-----------------CGGGEEEHHHHHHHH-TTTSCCCTTTT
T ss_pred Hh--cCCeEEEcCChHHHHHHHHHhhhhcccCCccC-----------------CCCcchhHHHHHHHh-CCCCCCCCHHH
Confidence 75 2246899998789999998765432 4421 112467887655431 11135899999
Q ss_pred HHHHHcCCCCCC---------CChHHHHH--------------HHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 398 VTKAKLGYDPLE---------VNPEDMVR--------------FAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 398 Va~~~LG~~K~d---------vd~~~i~~--------------~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+++.+|+..-.. ++.+++.. -|.+-++.+..|+..||..|+.|+.++
T Consensus 110 La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L 179 (698)
T 1x9m_A 110 LRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKL 179 (698)
T ss_dssp SCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 999887320000 01011100 011112567899999999999999986
No 24
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=95.79 E-value=0.0064 Score=66.63 Aligned_cols=106 Identities=17% Similarity=0.080 Sum_probs=63.8
Q ss_pred CceEEEEEEEEccCCCCCCCCCCCeEEEEEEEE-cCCceEEE--cccccccc--cccccCCCC----CCCCC--ceEEec
Q 000161 238 EVHVCAFDIETTKLPLKFPDADYDIIMMISYML-DGQGYLII--NRECVGED--IEDLEYTPK----PEFEG--YFKVTN 306 (1988)
Q Consensus 238 ~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~-~~~g~li~--nreivs~d--i~~feytp~----~~~~g--~f~V~~ 306 (1988)
+.++++||+||++. +|..|+|+.|+.+. +++|..+. -...|... |.+. .+|- -...| +-.+..
T Consensus 4 ~~~~v~iD~ETTGl-----~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~-i~~~~~~~~~itGIt~~~l~~ 77 (180)
T 2igi_A 4 ENNLIWIDLEMTGL-----DPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLAL-MDDWNVRTHTASGLVERVKAS 77 (180)
T ss_dssp GGCEEEEEEEESSS-----CTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTT-CCHHHHHHHHHTTHHHHHHHC
T ss_pred CCcEEEEEeeCCCC-----CCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhc-CCHHHHHHHHHcCCCHHHHhc
Confidence 45689999999985 35679999999764 54543221 01111000 0000 0000 00012 001334
Q ss_pred CCCHHHHHHHHHHHHHhhCC---CEEEeeCcccCCHHHHHHHHHHcC
Q 000161 307 VNNEIELLRLWFAHMQEVKP---GIYVTYNGDYFDWPFLETRAAHHG 350 (1988)
Q Consensus 307 ~~dE~eLL~~F~~~I~~~DP---DIIvGYNgd~FDlPyL~~Ra~~lG 350 (1988)
.++..+++..|.+++..+-| .+++|||. .||++||..-+..+|
T Consensus 78 ~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~-~fD~~fL~~~~~~~~ 123 (180)
T 2igi_A 78 TMGDREAELATLEFLKQWVPAGKSPICGNSI-GQDRRFLFKYMPELE 123 (180)
T ss_dssp CCCHHHHHHHHHHHHTTTSCTTTSCEEESSH-HHHHHHHHHHCHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCceEEecCH-HHHHHHHHHHHHHhc
Confidence 57889999999999987533 48999997 799999987766553
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=95.76 E-value=0.055 Score=72.38 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=92.3
Q ss_pred HHHhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-hHcCCeEEEEeCCeEEEEcCCCChHhHHHHHHHHHHHhh
Q 000161 1569 ILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEF-RKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQ 1647 (1988)
Q Consensus 1569 ll~~~~RWl~sp~S~LyDPaL~r~v~~LmkK~flqLlaEf-kRLGs~VVyAd~~riil~T~K~~v~~A~ay~~yi~~si~ 1647 (1988)
+++.+|-++....+.+|++.+...|-..=+..+.+...++ .+.|++|||+|-..|.+.++..+.+++...++-+.+.|.
T Consensus 489 ~~NS~YG~~g~~~~r~~~~~~A~~vT~~Gr~~i~~~~~~i~~~~g~~ViygDTDSi~v~~~~~~~~~~~~~~~~~~~~i~ 568 (775)
T 1qht_A 489 LANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHATIPGADAETVKKKAKEFLKYIN 568 (775)
T ss_dssp HHTTHHHHHHCTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred eeccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeeccceEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999888888888887775 477999999999999999998899999888888877776
Q ss_pred ccccccceecchhchheeeeeecCCCcccc
Q 000161 1648 TRELFEWIELEPVHFWHSLLFMDQYNYGGI 1677 (1988)
Q Consensus 1648 ~~~lF~~l~L~~~~yW~~LlwmD~~NygGi 1677 (1988)
+. +-+.+.|+....|..+++..+-+|+|+
T Consensus 569 ~~-~~~~~~le~e~~y~~~~l~~KKrYa~~ 597 (775)
T 1qht_A 569 PK-LPGLLELEYEGFYVRGFFVTKKKYAVI 597 (775)
T ss_dssp -------CCCEEEEEEEEEEEEETTEEEEE
T ss_pred hc-CCCCeEEEEeEEeeeheecccCeEEEE
Confidence 54 335789999999999999999999997
No 26
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=95.52 E-value=0.027 Score=67.40 Aligned_cols=163 Identities=9% Similarity=0.054 Sum_probs=96.3
Q ss_pred CceEEEEEEEEccCCCCCCCCCCC---eEEEEEEEE-cC-CceEEE---cccccccc----cccccCCCCCCCCC--ceE
Q 000161 238 EVHVCAFDIETTKLPLKFPDADYD---IIMMISYML-DG-QGYLII---NRECVGED----IEDLEYTPKPEFEG--YFK 303 (1988)
Q Consensus 238 ~lrvLsfDIEt~s~~~~fPdp~~D---~Ii~IS~~~-~~-~g~li~---nreivs~d----i~~feytp~~~~~g--~f~ 303 (1988)
.-+.++||+||++.. +..| +||.|+++. +. +|.++. -...|... |..+. .+..| .-.
T Consensus 18 ~~~~vviD~ETTGl~-----~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~----~~ltGIt~e~ 88 (308)
T 3cg7_A 18 FDTLLILDFETTSDA-----ANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNC----VDFTGIPQRS 88 (308)
T ss_dssp CSEEEEEEEEECCBT-----TBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHH----HHHHCCCHHH
T ss_pred CCeEEEEEeecCCCC-----CCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHH----HHHcCCCHHH
Confidence 346899999999853 3344 999999774 43 444321 11111100 00000 00011 001
Q ss_pred EecCCCHHHHHHHHHHHHHhhCCCEEEeeCc-----ccCCH-HHHHHHHHHcCCCCCcccCccccCCCCceeeccceEec
Q 000161 304 VTNVNNEIELLRLWFAHMQEVKPGIYVTYNG-----DYFDW-PFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLD 377 (1988)
Q Consensus 304 V~~~~dE~eLL~~F~~~I~~~DPDIIvGYNg-----d~FDl-PyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiD 377 (1988)
|...++..+++.+|.+++.... ++|||. -.||+ .||..-+..+|+..... ..-.+|
T Consensus 89 v~~ap~~~evl~~f~~~l~~~~---lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~---------------~~~~iD 150 (308)
T 3cg7_A 89 IDTADTFDVVYEQFQQWLITLG---LEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAF---------------FRQYIN 150 (308)
T ss_dssp HHTSCBHHHHHHHHHHHHHHHC---CCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGG---------------GSEEEE
T ss_pred HhcCCCHHHHHHHHHHHHHhCC---cCCcceEEeccCcccHHHHHHHHHHHcCCCCchh---------------hcceee
Confidence 3346788899999999999863 355554 16999 79988888888864210 123578
Q ss_pred hHHHHhhccC-C----CCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 378 CFAWVKRDSY-L----PQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 378 l~~~vkrd~~-L----~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+...+++... . ..++++|++++++ +|.....- .+-.+.||.+|..|+.++
T Consensus 151 t~~l~~~~~~~~~~~~~~~~~~L~~l~~~-~gi~~~~~----------------~HrAl~DA~ata~l~~~l 205 (308)
T 3cg7_A 151 LYKIFTNEMDRMGPKELSATTNIGKMNEY-YDLPTIGR----------------AHDAMDDCLNIATILQRM 205 (308)
T ss_dssp HHHHHHHHHHHHCCCCCCCCSHHHHHHHH-TTCCCCSC----------------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCcCHHHHHHH-cCCCCCCC----------------CcCHHHHHHHHHHHHHHH
Confidence 7776654211 0 1137899999974 77643210 133578999999998875
No 27
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.065 Score=72.75 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=100.3
Q ss_pred HHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHc---------CCeEEEEeCCeEEEEcCCCChHhHHHH
Q 000161 1568 AILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKL---------GATIIFANFSKVIIDTGKFDLSAAKAY 1638 (1988)
Q Consensus 1568 ~ll~~~~RWl~sp~S~LyDPaL~r~v~~LmkK~flqLlaEfkRL---------Gs~VVyAd~~riil~T~K~~v~~A~ay 1638 (1988)
.+++.+|-++....+.||++.+...|-..=+..+.+....+... |++|||+|-..|.|.++..++++|...
T Consensus 636 i~~NS~YG~~G~~~~r~~~~~iA~siT~~GR~~l~~t~~~ie~~~~~~~g~~~~~~ViYGDTDSvfv~~~~~~~~~~~~~ 715 (919)
T 3iay_A 636 ISANSVYGFTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDL 715 (919)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGTCSSCCEEEECBSSEEEEECSCSCHHHHHHH
T ss_pred ccccccccccccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCCeeEEEcCCCCHHHHHHH
Confidence 46789999999999999999999999999999999888888876 999999999999999999999999998
Q ss_pred HHHHHHHhhccccccceecchhchheeeeeecCCCcccccc
Q 000161 1639 CDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPA 1679 (1988)
Q Consensus 1639 ~~yi~~si~~~~lF~~l~L~~~~yW~~LlwmD~~NygGi~~ 1679 (1988)
++-+.+.|.++ +-+.+.|+..+.|..+|++-+-+|+|+.-
T Consensus 716 g~~~~~~v~~~-~~~~i~le~E~vy~~~ll~~KKrYag~~~ 755 (919)
T 3iay_A 716 GTEAAKYVSTL-FKHPINLEFEKAYFPYLLINKKRYAGLFW 755 (919)
T ss_dssp HHHHHHHHHTT-SCTTCCEEEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHh-CCCCEEEEEeeeehhhhhhcccceEEEEe
Confidence 88888888875 33578999999999999999999999854
No 28
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.31 E-value=0.066 Score=71.47 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=96.2
Q ss_pred HHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHcCCeEEEEeCCeEEEEcCC-CChHhHHHHHHHHHHHh
Q 000161 1568 AILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGK-FDLSAAKAYCDSLLKAL 1646 (1988)
Q Consensus 1568 ~ll~~~~RWl~sp~S~LyDPaL~r~v~~LmkK~flqLlaEfkRLGs~VVyAd~~riil~T~K-~~v~~A~ay~~yi~~si 1646 (1988)
.+++.+|-++....+.||++.+...|-..=+..+.+....++..|.+|||+|-..+.|..+. .+.++|...++-+.+.|
T Consensus 497 i~~Ns~YG~~G~~~~~~~~~~~A~~iT~~GR~~l~~~~~~ie~~g~~ViYGDTDSvfv~~~~~~~~~~~~~~g~~l~~~v 576 (786)
T 3k59_A 497 IIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHV 576 (786)
T ss_dssp HHHHHHHHGGGSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSEEEEECCSCCCHHHHHHHHHHHHHHH
T ss_pred eeeecccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeccceEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999997 79999988877777776
Q ss_pred hcc--------ccccceecchhchheeeeee--------cCCCcccccc
Q 000161 1647 QTR--------ELFEWIELEPVHFWHSLLFM--------DQYNYGGIPA 1679 (1988)
Q Consensus 1647 ~~~--------~lF~~l~L~~~~yW~~Llwm--------D~~NygGi~~ 1679 (1988)
.++ -+-..|+|+..+.|..++.. -+-+|+|+..
T Consensus 577 n~~~~~~~~~~~l~~~i~Le~Ekvy~~~ll~t~rg~~~~~KKRYag~~~ 625 (786)
T 3k59_A 577 NAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQ 625 (786)
T ss_dssp HHHHHHHHHTTTCCCCCCEEEEEEESEEEECBCTTSSSBCSSCEEEEEE
T ss_pred HHHHHhhhhhhcCCCceEEEEEEeEhhheehhccCCcccccceEEEEEe
Confidence 653 23457889999888876664 3789999854
No 29
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=94.87 E-value=0.018 Score=64.18 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=62.9
Q ss_pred CCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEE-cCCceEEEc--cccccc--ccccccCCCCC-CC---CC--ceEEe
Q 000161 237 AEVHVCAFDIETTKLPLKFPDADYDIIMMISYML-DGQGYLIIN--RECVGE--DIEDLEYTPKP-EF---EG--YFKVT 305 (1988)
Q Consensus 237 p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~-~~~g~li~n--reivs~--di~~feytp~~-~~---~g--~f~V~ 305 (1988)
.+.++++||+||++. +|..|+|+.|+.+. ++++..+.. ...|.. .+.+. ..|-+ +. .| +-.+.
T Consensus 7 ~~~~~vviD~ETTGl-----~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~-~~~~~~~~~~itGIt~~~l~ 80 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGL-----DTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEA-MDEWNRNQHRRSGLWQRVLD 80 (194)
T ss_dssp -CCEEEEEEEEESCS-----CTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHT-SCSHHHHHHHHHTHHHHHHH
T ss_pred CCCCEEEEEeECCCC-----CCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhc-cchHHHHHHHhhCCCHHHHh
Confidence 346789999999985 46679999999775 333211110 001100 00000 00000 00 12 00133
Q ss_pred cCCCHHHHHHHHHHHHHhhCC---CEEEeeCcccCCHHHHHHHHHHcC
Q 000161 306 NVNNEIELLRLWFAHMQEVKP---GIYVTYNGDYFDWPFLETRAAHHG 350 (1988)
Q Consensus 306 ~~~dE~eLL~~F~~~I~~~DP---DIIvGYNgd~FDlPyL~~Ra~~lG 350 (1988)
..++..+.+..|.+++...-| .+++|||. .||++||...+..+|
T Consensus 81 ~~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~-~FD~~fL~~~~~~~~ 127 (194)
T 2gbz_A 81 SQVTHAQAEAQTVAFLGEWIRAGASPMCGNSI-CQDRRFLHRQMSRLE 127 (194)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCTTSSCEEESSH-HHHHHHHHHHCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCceEEecCH-HHhHHHHHHHHHHhc
Confidence 457899999999999987521 24999998 799999988766554
No 30
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=94.36 E-value=0.33 Score=63.22 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=94.7
Q ss_pred eEEEEEEEEccCCCCCCCCCCCeEEEEEEEE-cCCceEEEcccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHH
Q 000161 240 HVCAFDIETTKLPLKFPDADYDIIMMISYML-DGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWF 318 (1988)
Q Consensus 240 rvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~-~~~g~li~nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~ 318 (1988)
.+++||+||++. ++..+.|+.|++.+ ++.++.+ ++... .+ | +-...+..+++..|.
T Consensus 27 ~~va~DtEttgl-----~~~~~~iv~I~~~~~~g~~~yi---p~~~~---~~---------~---~~~~l~~~~vl~~L~ 83 (605)
T 2kfn_A 27 PVFAFDTETDSL-----DNISANLVGLSFAIEPGVAAYI---PVAHD---YL---------D---APDQISRERALELLK 83 (605)
T ss_dssp SSEEEEEEESCS-----CTTTCCEEEEEEEEETTEEEEE---ECCCC---ST---------T---CCCCCCHHHHHHHHH
T ss_pred CeEEEEEecCCC-----CcccCceEEEEEEEcCCcEEEE---ecccc---cc---------c---cccccCHHHHHHHHH
Confidence 568899999985 24467899998886 4433332 00000 00 0 000123456778888
Q ss_pred HHHHhhCCC-EEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCCCHHH
Q 000161 319 AHMQEVKPG-IYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKA 397 (1988)
Q Consensus 319 ~~I~~~DPD-IIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~SysL~~ 397 (1988)
.++.+ |+ ..++||. .||+.+|.. +|+.+ .| ..+|++-...-- .....+|+|++
T Consensus 84 ~~L~d--~~i~kV~hna-k~D~~~L~~----~Gi~l-----------------~~-~~~DT~laayLL-~p~~~~~~L~~ 137 (605)
T 2kfn_A 84 PLLED--EKALKVGQNL-KYDRGILAN----YGIEL-----------------RG-IAFDTMLESYIL-NSVAGRHDMDS 137 (605)
T ss_dssp HHHTC--TTSCEEESSH-HHHHHHHHT----TTCCC-----------------CC-EEEEHHHHHHHH-CTTSSCCSHHH
T ss_pred HHHcC--CCCeEEEECc-HHHHHHHHH----CCCCC-----------------CC-ccccHHHHHHHh-CCCCCCCCHHH
Confidence 88764 44 5899998 699999964 45532 12 567887554431 11135899999
Q ss_pred HHHHHcCCCCCCCChHHHHH------HHhh-ChHHHHHHHHHhhHHHHHHHHHh
Q 000161 398 VTKAKLGYDPLEVNPEDMVR------FAKE-KPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 398 Va~~~LG~~K~dvd~~~i~~------~~~~-~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
++..+||..... .+++.. -|.. .++....|+..||..++.|+.++
T Consensus 138 La~~~Lg~~~i~--~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L 189 (605)
T 2kfn_A 138 LAERWLKHKTIT--FEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKM 189 (605)
T ss_dssp HHHHHSCCCCCC--HHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccc--HHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998865432 122110 0111 12567899999999999998875
No 31
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=88.90 E-value=1.2 Score=60.21 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=81.1
Q ss_pred HHHhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHcCCeEEEEeCCeEEEEcCCCChHhHHHHHHHHHHHhhc
Q 000161 1569 ILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQT 1648 (1988)
Q Consensus 1569 ll~~~~RWl~sp~S~LyDPaL~r~v~~LmkK~flqLlaEfkRLGs~VVyAd~~riil~T~K~~v~~A~ay~~yi~~si~~ 1648 (1988)
+++.+|-++....+.||++.+...|-..=+..+.+.......+|++|||+|-..|.|... +.+.+...++++.+.
T Consensus 570 ~~NS~YG~~g~~~~~~~~~~~A~~iT~~GR~~l~~t~~~ve~~g~~ViYGDTDSi~v~~~--~~~~~~~~~~~v~~~--- 644 (847)
T 1s5j_A 570 FINATYGVFGAETFPLYAPRVAESVTALGRYVITSTVKKAREEGLTVLYGDTDSLFLLNP--PKNSLENIIKWVKTT--- 644 (847)
T ss_dssp HHHHHHHHHHSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEESC--CHHHHHHHHHHHHHH---
T ss_pred HhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCcceEEecC--cHHHHHHHHHHHHhh---
Confidence 478899999999999999999999999999999999999999999999999999999864 344555556665432
Q ss_pred cccccceecchhchheeeeee-cCCCccccc
Q 000161 1649 RELFEWIELEPVHFWHSLLFM-DQYNYGGIP 1678 (1988)
Q Consensus 1649 ~~lF~~l~L~~~~yW~~Llwm-D~~NygGi~ 1678 (1988)
| .+.|+....|..|+.. .+-+|+|+.
T Consensus 645 ---~-~i~le~e~vy~~~ll~~~KKrYag~~ 671 (847)
T 1s5j_A 645 ---F-NLDLEVDKTYKFVAFSGLKKNYFGVY 671 (847)
T ss_dssp ---S-SCCEEEEEEEEEEEEC----CEEEEC
T ss_pred ---c-CccEEecchhHhHccchhhCcEEEEe
Confidence 2 3788888888887765 899999984
No 32
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=87.82 E-value=1 Score=62.80 Aligned_cols=111 Identities=15% Similarity=0.235 Sum_probs=88.4
Q ss_pred HHHhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHH--------------HHHHh---------HcCCeEEEEeCCeEEE
Q 000161 1569 ILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAML--------------LAEFR---------KLGATIIFANFSKVII 1625 (1988)
Q Consensus 1569 ll~~~~RWl~sp~S~LyDPaL~r~v~~LmkK~flqL--------------laEfk---------RLGs~VVyAd~~riil 1625 (1988)
+++.+|-++-...+.||++.+...|-..=+..+.+. +++|. ++|++|||.|-..|.|
T Consensus 771 ~aNS~YG~~G~~~grlpc~~iA~sVT~~GR~~L~~tk~~IE~~~~~~~~l~~~f~~~~~~~~~~~~g~~VIYGDTDSvfV 850 (1193)
T 2gv9_A 771 VCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFV 850 (1193)
T ss_dssp HHHHHHHHHHCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHCGGGGGGBCSSCCEEEEEEECSSEEEE
T ss_pred hhcceecccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhcccccccccccccccceeeccCCceEE
Confidence 568999999999999999999998855555444443 23332 4599999999999999
Q ss_pred EcCCCChHhHHHHHHHHHHHhhccccccceecchhchheeeeeecCCCcccccc
Q 000161 1626 DTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPA 1679 (1988)
Q Consensus 1626 ~T~K~~v~~A~ay~~yi~~si~~~~lF~~l~L~~~~yW~~LlwmD~~NygGi~~ 1679 (1988)
..+..+.++|...++-+.+.|.++-.-..+.|+...-|..++...+-+|+|+..
T Consensus 851 ~~~~~~~~~~~~~g~~i~~~i~~~~~~~~i~LE~Ekvy~~~ll~~KKRYag~~~ 904 (1193)
T 2gv9_A 851 LCRGLTAAGLTAMGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIY 904 (1193)
T ss_dssp EEETBCSTTHHHHHHHHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTEEEEEET
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHhccCCCEEEEeceeeHHHhhhccceEEEEec
Confidence 877778888888888887777654223469999999999999999999999853
No 33
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=78.09 E-value=4.3 Score=50.62 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=83.9
Q ss_pred ceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEcCCceEEEcccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHH
Q 000161 239 VHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWF 318 (1988)
Q Consensus 239 lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~~g~li~nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~ 318 (1988)
-.+++||.|+.+.. +....+..|++...+..+++. |-. .. +.+..|.
T Consensus 129 ~~~vavDtE~~~~~-----~~~~~l~lIQLa~~~~~~lid---------------pl~----------l~---~~l~~L~ 175 (428)
T 3saf_A 129 CQEFAVNLEHHSYR-----SFLGLTCLMQISTRTEDFIID---------------TLE----------LR---SDMYILN 175 (428)
T ss_dssp CSEEEEEEEEECTT-----CSSCEEEEEEEECSSCEEEEE---------------TTT----------TG---GGGGGGH
T ss_pred CCeEEEEEEecCCC-----CCCCeEEEEEEEeCCcEEEEE---------------ecc----------ch---hhHHHHH
Confidence 45899999998632 334567667666433333321 000 00 1123344
Q ss_pred HHHHhhCCCEE-EeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCCCHHH
Q 000161 319 AHMQEVKPGIY-VTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKA 397 (1988)
Q Consensus 319 ~~I~~~DPDII-vGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~SysL~~ 397 (1988)
.++. ||+|+ ||||. .+|+..|..+ +|+.. . ..+|+.-...- +..++++|++
T Consensus 176 ~lL~--dp~i~KV~H~~-k~Dl~~L~~~---~Gi~~-----------------~--~~fDT~lAa~l---L~~~~~gL~~ 227 (428)
T 3saf_A 176 ESLT--DPAIVKVFHGA-DSDIEWLQKD---FGLYV-----------------V--NMFDTHQAARL---LNLGRHSLDH 227 (428)
T ss_dssp HHHT--CTTSEEEESSC-HHHHHHHHHH---HCCCC-----------------S--SEEEHHHHHHH---TTCSCCSHHH
T ss_pred HHHc--CCCceEEEeeh-HHHHHHHHHH---cCCCc-----------------C--ceeechhHHHH---hCCCCCCHHH
Confidence 4443 67764 99998 6898887533 45532 1 14687755433 2235689999
Q ss_pred HHHHHcCCCCCCCChHHHHHHHhhC--hHHHHHHHHHhhHHHHHHHHHh
Q 000161 398 VTKAKLGYDPLEVNPEDMVRFAKEK--PQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 398 Va~~~LG~~K~dvd~~~i~~~~~~~--~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
++..+||..-..- +.... |... ....+.|+..||..+++|+..+
T Consensus 228 Lv~~~Lg~~l~K~--~~~sd-W~~rpLs~~q~~YAA~DA~~ll~L~~~L 273 (428)
T 3saf_A 228 LLKLYCNVDSNKQ--YQLAD-WRIRPLPEEMLSYARDDTHYLLYIYDKM 273 (428)
T ss_dssp HHHHHHCCCCCCT--TTTSC-TTCSSCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHcCCCCCcc--ccccc-cccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999642210 11111 2211 1467899999999999999986
No 34
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=72.35 E-value=8.5 Score=43.28 Aligned_cols=112 Identities=19% Similarity=0.400 Sum_probs=81.4
Q ss_pred CCCcccCCCCceeeCccccCCCCCCcccc-cccCcc--cCCCccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhccc
Q 000161 1850 PEAEFRDPCPSFILPNVICSYCNDCRDLD-LCRDMA--LLAQDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDL 1926 (1988)
Q Consensus 1850 ~eA~f~~P~~sl~L~~ViC~~Cn~~rDLD-lCrD~~--~~~~~W~C~~~~C~~~yd~~~IE~~LI~~v~~~~~~YqlQDL 1926 (1988)
++-.|++ |..|+|. |..|.+....+ +..... ....-..|+. |+..+....|-.+|--.+++.+..|..--|
T Consensus 11 DeeRfr~-c~~l~l~---Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~--C~~~~~~~~i~nQl~l~iR~~i~~YY~gwl 84 (206)
T 3flo_B 11 DVERFKD-TVTLELS---CPSCDKRFPFGGIVSSNYYRVSYNGLQCKH--CEQLFTPLQLTSQIEHSIRAHISLYYAGWL 84 (206)
T ss_dssp CTTTTTT-CCCEEEE---CTTTCCEEEECSSSCCSSEEEETTEEEETT--TCCBCCHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHhCc-CceeEEE---CCCCCCccCCCCcccCCCcccccccccCCC--CCCcCCHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3344554 6677765 77776533222 111111 1123478999 999999999999999999999999999999
Q ss_pred ccCc--chHHhhhc--ccccC---CcCCCceeccChhHHHHHHHHHHH
Q 000161 1927 VCIR--CNQVKAAH--LAEQC---ACAGSFRCKEDASDFRSKMQIFLN 1967 (1988)
Q Consensus 1927 ~C~K--C~~vk~~~--ls~~C---~CsG~~~~t~~~~~~~~~l~v~~~ 1967 (1988)
+|.- |+...+.. ....| .|.|......+..++-.+|.-|+.
T Consensus 85 vCdD~~C~~rTR~lsv~g~rC~~p~C~G~m~~eYtek~LYnQL~yf~~ 132 (206)
T 3flo_B 85 QCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDS 132 (206)
T ss_dssp EESCTTTCCEESCCCSSTTBCSSTTCCCBEEESSCHHHHHHHHHHHHH
T ss_pred ccCCcCCCcccceeeccCCCCCCCCCCeeEeeeecHHHHHHHHHHHHH
Confidence 9965 86543332 46778 599999999999999999998765
No 35
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=71.89 E-value=7.8 Score=43.04 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=56.9
Q ss_pred CCCE-EEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCCCHHHHHHHHc
Q 000161 325 KPGI-YVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKL 403 (1988)
Q Consensus 325 DPDI-IvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~SysL~~Va~~~L 403 (1988)
||+| .+|||.. +|+..|.+. +|+.+ .| .+|+-..+..-.. +..+++|+++++.+|
T Consensus 94 d~~i~Kv~~~~k-~D~~~L~~~---~gi~~-----------------~~--~fDlt~lAayll~-~~~~~~L~~L~~~~l 149 (208)
T 2e6m_A 94 NKSIKKAGVGIE-GDQWKLLRD---FDVKL-----------------ES--FVELTDVANEKLK-CAETWSLNGLVKHVL 149 (208)
T ss_dssp CTTSEEEESSHH-HHHHHHHHH---HCCCC-----------------CS--EEEHHHHHHHHTT-CCCCCCHHHHHHHHH
T ss_pred CCCceEEEEeeH-HHHHHHHHH---CCCCC-----------------CC--EEEHHHHHHHHcc-CCCChhHHHHHHHHc
Confidence 5664 5899974 577776432 55532 13 5674333332111 235899999999998
Q ss_pred CCCCCCCChHHHH-HHHhhCh--HHHHHHHHHhhHHHHHHHHHh
Q 000161 404 GYDPLEVNPEDMV-RFAKEKP--QMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 404 G~~K~dvd~~~i~-~~~~~~~--~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
|..-. .+.... .-|...| .....|...||..++.|+.++
T Consensus 150 ~~~~~--K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L 191 (208)
T 2e6m_A 150 GKQLL--KDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 191 (208)
T ss_dssp SCBCC--CCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcC--CCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 86432 111111 1122222 357899999999999999876
No 36
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=51.00 E-value=39 Score=43.76 Aligned_cols=142 Identities=13% Similarity=0.050 Sum_probs=84.2
Q ss_pred EEEEEEEEccCCCCCCCCCCCeEEEEEEEEcCCceEEEcccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHHHH
Q 000161 241 VCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAH 320 (1988)
Q Consensus 241 vLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~~g~li~nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~~~ 320 (1988)
-.++|.|+... ++...+++.|++...+..+.+ | ......+..|..+
T Consensus 31 ~~aldtE~~~~-----~~~~a~Lvgisla~~~~a~yI----------------p-------------~~~~~~l~~Lk~l 76 (592)
T 3pv8_A 31 KAALVVEVVEE-----NYHDAPIVGIAVVNEHGRFFL----------------R-------------PETALADPQFVAW 76 (592)
T ss_dssp EEEEEEECCSS-----SCTTCCCCEEEEEETTEEEEE----------------C-------------HHHHTTCHHHHHH
T ss_pred CcEEEEEEcCC-----ccCcccEEEEEEEcCCceEEE----------------c-------------cchhhHHHHHHHH
Confidence 35899999874 345567788887754322221 0 0001234455566
Q ss_pred HHhhCCC-EEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCCCHHHHH
Q 000161 321 MQEVKPG-IYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVT 399 (1988)
Q Consensus 321 I~~~DPD-IIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~SysL~~Va 399 (1988)
+. ||+ ..+|||. .||+-+|. .+|+.+. | ..+|++-...-- .....+|+|++++
T Consensus 77 Le--d~~i~KV~hn~-K~Dl~vL~----~~Gi~l~-----------------g-~~fDTmLAAYLL-~p~~~~~~L~~La 130 (592)
T 3pv8_A 77 LG--DETKKKSMFDS-KRAAVALK----WKGIELC-----------------G-VSFDLLLAAYLL-DPAQGVDDVAAAA 130 (592)
T ss_dssp HT--CTTSEEEESSH-HHHHHHHH----HTTCCCC-----------------C-EEEEHHHHHHHH-CGGGCCCSHHHHH
T ss_pred Hh--CCCCeEEEech-HHHHHHHH----HcCCCCC-----------------C-ccchHHHHHHHc-CCCCCCCCHHHHH
Confidence 55 455 5799998 67888774 3566531 2 467876332110 0012479999999
Q ss_pred HHHcCCCCCCCChHHHHHHHhh----ChHHHHHHHHHhhHHHHHHHHHh
Q 000161 400 KAKLGYDPLEVNPEDMVRFAKE----KPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 400 ~~~LG~~K~dvd~~~i~~~~~~----~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
..+||..... .+++...-.. ..+....|+..||..+++|+.++
T Consensus 131 ~~yLg~~l~~--~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L 177 (592)
T 3pv8_A 131 KMKQYEAVRP--DEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPF 177 (592)
T ss_dssp GGGTCCSSCC--HHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCch--HHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999865432 2222211000 11567899999999999998765
No 37
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=41.76 E-value=11 Score=48.39 Aligned_cols=100 Identities=7% Similarity=-0.084 Sum_probs=63.5
Q ss_pred CCCCceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEcCCceEEEcccccccccccccCCCCCCCCCceEEecCCCHHHHH
Q 000161 235 QRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELL 314 (1988)
Q Consensus 235 ~~p~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~~~g~li~nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL 314 (1988)
+.|++.-+++|.|+.... +....++.|++...+..+ ..+ ..+
T Consensus 6 ~~~~p~~valDtE~~~~~-----~~~a~Lvgi~la~~~~a~------------------------------~i~---~~l 47 (540)
T 4dfk_A 6 PWPPPEGAFVGFVLSRKE-----PMWADLLALAAARGGRVH------------------------------RAP---EPY 47 (540)
T ss_dssp CSCCCTTCEEEEEESSSC-----TTTCCEEEEEEEETTEEE------------------------------ECS---SHH
T ss_pred CCCCCCceEEEEEecCCc-----cCcccEEEEEEEcCCEEE------------------------------Eeh---hhH
Confidence 456667799999999753 455678888877433211 011 256
Q ss_pred HHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCCC
Q 000161 315 RLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQG 394 (1988)
Q Consensus 315 ~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~Sys 394 (1988)
..|..++.+ -..++||. .||+. .+|+.+ . ..+|++-...-- -|. +|+
T Consensus 48 ~~l~~~l~d---~~kV~hn~-K~Dl~-------~~Gi~~-----------------~--~~fDT~laAyLL--~p~-~~~ 94 (540)
T 4dfk_A 48 KALRDLKEA---RGLLAKDL-SVLAL-------REGLGL-----------------P--PGDDPMLLAYLL--DPS-NTT 94 (540)
T ss_dssp HHHTTCSSB---CSTTHHHH-HHHHH-------HTTCCC-----------------C--BCCCHHHHHHHH--CTT-CCC
T ss_pred HHHHHHHcC---CCEEEecc-HHHHH-------HcCCCC-----------------C--cceeHHHHHHHh--CCC-CCC
Confidence 667676665 34689988 56765 456642 1 346776543321 133 899
Q ss_pred HHHHHHHHcCC
Q 000161 395 LKAVTKAKLGY 405 (1988)
Q Consensus 395 L~~Va~~~LG~ 405 (1988)
|+++++.+||.
T Consensus 95 L~~La~~yl~~ 105 (540)
T 4dfk_A 95 PEGVARRYGGE 105 (540)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhhh
Confidence 99999999885
No 38
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=41.66 E-value=1.3e+02 Score=36.60 Aligned_cols=100 Identities=14% Similarity=0.029 Sum_probs=62.2
Q ss_pred HHHHHHHHhhCCCE-EEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCC
Q 000161 315 RLWFAHMQEVKPGI-YVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQ 393 (1988)
Q Consensus 315 ~~F~~~I~~~DPDI-IvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~Sy 393 (1988)
..|..++. ||+| .+|||. .+|+..|.. .+|+.. ...+|+.-...-- . +..+|
T Consensus 64 ~~L~~ll~--d~~i~Kv~h~~-k~Dl~~L~~---~~Gi~~-------------------~~~fDt~lAa~lL-~-~~~~~ 116 (375)
T 1yt3_A 64 SPLKAILR--DPSITKFLHAG-SEDLEVFLN---VFGELP-------------------QPLIDTQILAAFC-G-RPMSW 116 (375)
T ss_dssp HHHHHHHH--CTTSEEEESSC-HHHHHHHHH---HHSSCC-------------------SSEEEHHHHHHHT-T-CCTTC
T ss_pred HHHHHHHc--CCCceEEEeeH-HHHHHHHHH---HcCCCC-------------------CcEEEcHHHHHHc-C-CCCCh
Confidence 34445554 4665 699998 478888854 245532 1346776544331 1 12489
Q ss_pred CHHHHHHHHcCCCCCCCChHHHHHHHhhCh--HHHHHHHHHhhHHHHHHHHHh
Q 000161 394 GLKAVTKAKLGYDPLEVNPEDMVRFAKEKP--QMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 394 sL~~Va~~~LG~~K~dvd~~~i~~~~~~~~--~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+|+++++.+||..-.. ...... |...| .....|...||..++.|+.++
T Consensus 117 ~L~~L~~~~l~~~l~K--~~~~sd-w~~rpL~~~q~~YAa~Da~~l~~L~~~L 166 (375)
T 1yt3_A 117 GFASMVEEYSGVTLDK--SESRTD-WLARPLTERQCEYAAADVWYLLPITAKL 166 (375)
T ss_dssp CHHHHHHHHHCCCCCC--TTTTSC-TTSSSCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCC--CcccCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864321 111111 22222 367899999999999999876
No 39
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=36.96 E-value=72 Score=39.40 Aligned_cols=98 Identities=12% Similarity=0.147 Sum_probs=61.2
Q ss_pred HHHHHHHhhCCCE-EEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCCC
Q 000161 316 LWFAHMQEVKPGI-YVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQG 394 (1988)
Q Consensus 316 ~F~~~I~~~DPDI-IvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~Sys 394 (1988)
.|..++. ||+| .||||. .+|+..|... +|+.. .| .+|+.-...- +..++++
T Consensus 150 ~L~~lL~--d~~i~KV~h~~-k~Dl~~L~~~---~Gi~~-----------------~~--~fDt~lAa~L---L~~~~~~ 201 (410)
T 2hbj_A 150 ILNEVFT--NPSIVKVFHGA-FMDIIWLQRD---LGLYV-----------------VG--LFDTYHASKA---IGLPRHS 201 (410)
T ss_dssp GGHHHHT--CTTSEEEESSC-HHHHHHHHHH---HCCCC-----------------SS--EEEHHHHHHH---HTCSCCS
T ss_pred HHHHHHc--CCCceEEEEeh-HHHHHHHHHH---cCCCc-----------------CC--EEEcHHHHHH---hCCCccC
Confidence 3444443 5665 599998 4688888543 45532 13 5787754432 2224799
Q ss_pred HHHHHHHHcCCCCCCCChHHHHHHHhhC--hHHHHHHHHHhhHHHHHHHHHh
Q 000161 395 LKAVTKAKLGYDPLEVNPEDMVRFAKEK--PQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 395 L~~Va~~~LG~~K~dvd~~~i~~~~~~~--~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
|+.+++.+||..... ...... |... ......|...||..++.|+.++
T Consensus 202 L~~L~~~~lg~~l~K--~~~~sd-W~~rpL~~~q~~YAa~Da~~ll~L~~~L 250 (410)
T 2hbj_A 202 LAYLLENFANFKTSK--KYQLAD-WRIRPLSKPMTAAARADTHFLLNIYDQL 250 (410)
T ss_dssp HHHHHHHHSCCCCCC--TTTTSC-TTCSSCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHcCCCCCc--cccccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998864211 001111 2222 2368899999999999999886
No 40
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=33.62 E-value=35 Score=46.25 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=76.4
Q ss_pred HHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhH---------cCCeEEEEeCCeEEEEcCCCChH-----
Q 000161 1568 AILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRK---------LGATIIFANFSKVIIDTGKFDLS----- 1633 (1988)
Q Consensus 1568 ~ll~~~~RWl~sp~S~LyDPaL~r~v~~LmkK~flqLlaEfkR---------LGs~VVyAd~~riil~T~K~~v~----- 1633 (1988)
.+++.+|-.+..+.+.|||+.+...|-..=+.++.+....... -++.|||+|-..|.|+.+...-.
T Consensus 561 i~~NS~YG~~G~~~~r~~~~~~A~sIT~~GR~~i~~~~~~v~~~~~~~~~~~~~~~VIYGDTDSvfV~~~~~~~~~~~~~ 640 (903)
T 3qex_A 561 ALINGLAGALGNVWFRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEAFVLYGDTDSIYVSADKIIDKVGESK 640 (903)
T ss_dssp HHHHHHHHHTTSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCEEEEETTEEEEECHHHHHHHCGGG
T ss_pred HHHHHHHHhhcCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCeEEEEEeCCceEEEeCCccchhhhhh
Confidence 4678999999999999999999999988877776655544432 24699999999999998754211
Q ss_pred --hHHHHHHHHHHH----hh----c--ccc------c-cceecchhchhee--------eeeecCCCcccccc
Q 000161 1634 --AAKAYCDSLLKA----LQ----T--REL------F-EWIELEPVHFWHS--------LLFMDQYNYGGIPA 1679 (1988)
Q Consensus 1634 --~A~ay~~yi~~s----i~----~--~~l------F-~~l~L~~~~yW~~--------LlwmD~~NygGi~~ 1679 (1988)
...+-+++|-+- +. + ++| | +-+.|....-... ++|+=+-+|+|+.-
T Consensus 641 f~~g~~l~~~i~~~~~~~~~~~i~~~~~el~e~~~~~~~p~~l~~E~i~~~~~gs~~~~~~l~~KKRYag~~~ 713 (903)
T 3qex_A 641 FRDTNHWVDFLDKFARERMEPAIDRGFREMCEYMNNKQHLMFMDREAIAGPPLGSKGIGGFWTGKKRYALNVW 713 (903)
T ss_dssp CSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECCCTTSCCCCEEEEETTEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccCCcceeeeeeeeecCcccccccchheeeccceEEEEe
Confidence 122222322110 00 0 111 3 2366666677777 89999999999854
No 41
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=28.25 E-value=53 Score=36.48 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=52.9
Q ss_pred CceEEEEEEEEccCCCCCCCCCCCeEEEEEEEEc-CCceEEEcccccccccccccC---CCC-CCCCCceEEecCCCHHH
Q 000161 238 EVHVCAFDIETTKLPLKFPDADYDIIMMISYMLD-GQGYLIINRECVGEDIEDLEY---TPK-PEFEGYFKVTNVNNEIE 312 (1988)
Q Consensus 238 ~lrvLsfDIEt~s~~~~fPdp~~D~Ii~IS~~~~-~~g~li~nreivs~di~~fey---tp~-~~~~g~f~V~~~~dE~e 312 (1988)
+++...+|.|++.+ ....++|+|+++.. |..+-.++.++-...+.+|-- -|+ +...+. ...+-.+
T Consensus 21 ~m~r~FlDTEFt~d------~~~~eLISIGlV~EdGrEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~----~~~s~~~ 90 (190)
T 4hec_A 21 SMVRYFYDTEFIED------GHTIELISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQ----LWRSRQQ 90 (190)
T ss_dssp CEEEEEEEEEEEEC------SSCEEEEEEEEEETTSCEEEEEETTSCGGGCCHHHHHHTGGGSCCTTST----TEECHHH
T ss_pred ceeEEEEeeeecCC------CCCCCEEEEEEEcCCCCEEEEEecCCChhhCcHHHHhccccCCCCCccc----ccCCHHH
Confidence 46778999999973 23568999998752 322222221111111111100 011 000110 1236778
Q ss_pred HHHHHHHHHHhhCCC--EEEeeCcccCCHHHHHH
Q 000161 313 LLRLWFAHMQEVKPG--IYVTYNGDYFDWPFLET 344 (1988)
Q Consensus 313 LL~~F~~~I~~~DPD--IIvGYNgd~FDlPyL~~ 344 (1988)
+..++.+++.....+ .|.+|+++ ||+.+|..
T Consensus 91 i~~~L~~FL~~~~~~~~eLwa~~~~-yD~~~L~q 123 (190)
T 4hec_A 91 IRLDLEEFLRIDGTDSIELWAWVGA-YDHVALCQ 123 (190)
T ss_dssp HHHHHHHHTTTTSSCEEEEEESSCH-HHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCEEEEeccc-ccHHHHHH
Confidence 888999999765433 57898875 89988854
No 42
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=23.94 E-value=1.8e+02 Score=32.54 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhCCCEE-EeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCC-CC
Q 000161 314 LRLWFAHMQEVKPGIY-VTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLP-QG 391 (1988)
Q Consensus 314 L~~F~~~I~~~DPDII-vGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~-~~ 391 (1988)
|..|.+++. ||+|+ |||.+ .+|+..|... +|+.. .-.+|+-.++......+ ..
T Consensus 97 L~~L~~lL~--d~~i~Kvg~~~-~~D~~~L~~~---~g~~~-------------------~~~~Dl~~la~~~lg~~~~~ 151 (206)
T 1vk0_A 97 LKDLYRFFA--SKFVTFVGVQI-EEDLDLLREN---HGLVI-------------------RNAINVGKLAAEARGTLVLE 151 (206)
T ss_dssp GHHHHHHHT--CSSSEEEESSC-HHHHHHHHHH---HCCCC-------------------SSEEEHHHHHHHHHTCGGGG
T ss_pred HHHHHHHhc--CCCceEEEecc-HHHHHHHHHh---cCCCc-------------------CCeeeHHHHHHHHcCCCCCC
Confidence 334555554 67764 88877 6899988543 45532 13567654443211111 25
Q ss_pred CCCHHHHHHHHcCCCCCCCCh-HHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 392 SQGLKAVTKAKLGYDPLEVNP-EDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 392 SysL~~Va~~~LG~~K~dvd~-~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+.+|..+++++||..- . +. ..+..|...-...-+.|...||...+.||.++
T Consensus 152 ~~gL~~Lv~~~lg~~l-K-~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L 203 (206)
T 1vk0_A 152 FLGTRELAHRVLWSDL-G-QLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQL 203 (206)
T ss_dssp GCCHHHHHHHHHCCCC-H-HHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhCCcC-C-CCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999532 1 21 13344333112578999999999999999885
No 43
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=22.36 E-value=4e+02 Score=33.13 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhCCCEEEeeCcccCCHHHHHHHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCC
Q 000161 314 LRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQ 393 (1988)
Q Consensus 314 L~~F~~~I~~~DPDIIvGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~Sy 393 (1988)
+..|..++.+ | ..+|||. .+|+..|. .+|+.. ...+|+....+- +..+++
T Consensus 84 l~~L~~lL~d--~-~KV~h~~-k~Dl~~L~----~~gi~~-------------------~~~fDt~lAa~l---L~~~~~ 133 (440)
T 3cym_A 84 WNDFNRAVGD--A-VWILHDS-LQDLPGFD----ELGMEP-------------------QRLFDTEIAARL---LGLKRF 133 (440)
T ss_dssp HHHHHHHHTT--C-EEEESSH-HHHHHHHH----HHTCCC-------------------CEEEEHHHHHHH---TTCSSC
T ss_pred HHHHHHHHCC--C-CEEEEcC-HHHHHHHH----HcCCcC-------------------CceehHHHHHHH---hCCCCC
Confidence 3455555543 5 6899987 56887663 356532 146787433222 212489
Q ss_pred CHHHHHHHHcCCCCCCCChHHHHHHHhhC--hHHHHHHHHHhhHHHHHHHHHh
Q 000161 394 GLKAVTKAKLGYDPLEVNPEDMVRFAKEK--PQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 394 sL~~Va~~~LG~~K~dvd~~~i~~~~~~~--~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
+|+.++..+||..-... ..... |... ......|...||..++.|+.++
T Consensus 134 gL~~L~~~~lg~~~~K~--~~~sd-w~~rpLs~~q~~YAa~Da~~Ll~L~~~L 183 (440)
T 3cym_A 134 GLAAVTEHFLGLTLAKE--HSAAD-WSYRPLPRDWRNYAALDVELLIELETKM 183 (440)
T ss_dssp SHHHHHHHHHCEECCCC--CTTCC-TTCSSCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHhCCCcccc--cccCC-CcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998532211 01111 2211 2367899999999999999876
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=21.95 E-value=50 Score=31.52 Aligned_cols=43 Identities=19% Similarity=0.097 Sum_probs=31.9
Q ss_pred ccccCCCCCCcccccccCcccCCCccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcccccCcchH
Q 000161 1865 NVICSYCNDCRDLDLCRDMALLAQDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQ 1933 (1988)
Q Consensus 1865 ~ViC~~Cn~~rDLDlCrD~~~~~~~W~C~~~~C~~~yd~~~IE~~LI~~v~~~~~~YqlQDL~C~KC~~ 1933 (1988)
++.|.-|. ++-+||-. .. ||+.|++..|+..|-+ +..|.-|++
T Consensus 14 ~~~CpI~~-----~~m~dPV~-------~~--cGhtf~r~~I~~~l~~------------~~~cP~~~~ 56 (85)
T 2kr4_A 14 EFRDPLMD-----TLMTDPVR-------LP--SGTVMDRSIILRHLLN------------SPTDPFNRQ 56 (85)
T ss_dssp TTBCTTTC-----SBCSSEEE-------CT--TSCEEEHHHHHHHHHH------------CSBCTTTCC
T ss_pred heECcccC-----chhcCCeE-------CC--CCCEECHHHHHHHHhc------------CCCCCCCcC
Confidence 67788775 66777664 34 8889999999998853 357877764
No 45
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=20.48 E-value=18 Score=49.16 Aligned_cols=48 Identities=27% Similarity=0.321 Sum_probs=34.1
Q ss_pred CCHHHHHHHHcCCCCCCC---------ChHHHHHHHhhChHHHHHHHHHhhHHHHHHHHHh
Q 000161 393 QGLKAVTKAKLGYDPLEV---------NPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTY 444 (1988)
Q Consensus 393 ysL~~Va~~~LG~~K~dv---------d~~~i~~~~~~~~~~La~Y~l~Da~lt~~L~~Kl 444 (1988)
-+|.+|++.++|..+++- +.++|. ++.+.|+.||..|+.+|+++|.++
T Consensus 287 ~SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~----~~fq~Lm~YCA~DV~aTh~V~~kl 343 (1172)
T 3ikm_A 287 NSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIR----ENFQDLMQYCAQDVWATHEVFQQQ 343 (1172)
T ss_dssp HHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCcccChhhHhhhhcCCHHHHH----HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 379999998888633332 222332 245789999999999999999875
Done!