BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000162
(1987 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 156/275 (56%), Gaps = 10/275 (3%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL 66
V+IDEAAQ E + IPL C Q LVGD QLPA V S+V+ ++ +G S+FERL
Sbjct: 487 VIIDEAAQAVEPATLIPLATRCKQ-VFLVGDPKQLPATVISTVAQDSGYGTSMFERLQKA 545
Query: 67 GHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVF 126
G+P +L QYRMHP I FP+ FYE + D + ++ + + +GP+ F ++
Sbjct: 546 GYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQT-TRDWHKYRCFGPFCFFDIH 604
Query: 127 GGREEFIEH-----SCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVIAIQE 181
G+E +H S N+ EV V+ I L + E K + I+SPY+ QV ++
Sbjct: 605 EGKES--QHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFKD 662
Query: 182 KLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRAR 241
+ + A V + ++DGFQG E+D+ I S VR+N G IGF S +R+NV +TRA+
Sbjct: 663 RFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAK 722
Query: 242 HCLWILGSERTLNHSESVWESLLDDAKARQCFFNI 276
+ ++GS TL S+ +W++L++ A+ R F +
Sbjct: 723 SSVLVVGSAATLK-SDPLWKNLIESAEQRNRLFKV 756
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 166/275 (60%), Gaps = 16/275 (5%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL 66
V+IDEA Q E S IPL+ + I+VGD QLP V S + + +SLF R+
Sbjct: 1587 VIIDEACQCTELSSIIPLRYGG-KRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEKN 1645
Query: 67 GHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAP---TVRKRSYEKRFLPGPMYGPYSFI 123
P +LL +QYRMHPSIS FP+S FY+ +++D P + KR + + P+ PY F
Sbjct: 1646 SSP-YLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQL---EPL-APYKFF 1700
Query: 124 NVFGGREE--FIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLS--IGIVSPYSAQVIAI 179
++ GR+E S NM E+ V ++++ L++ + ++K + IGI+SPY Q+ +
Sbjct: 1701 DIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKF-DNKIDFTGKIGIISPYREQMQKM 1759
Query: 180 QEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNT-GSIGFASTPQRINVALT 238
+++ + + ++ +IDGFQG E++II+IS VR+++T S+GF +R+NVALT
Sbjct: 1760 RKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALT 1819
Query: 239 RARHCLWILGSERTLNHSESVWESLLDDAKARQCF 273
RA+ +W+LG +R+L S+ +W L++DAK R C
Sbjct: 1820 RAKTSIWVLGHQRSLAKSK-LWRDLIEDAKDRSCL 1853
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 157/272 (57%), Gaps = 12/272 (4%)
Query: 4 LKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERL 63
+ V+IDEAAQ E S IPL+ C + ++VGD QLP V S S + + +SL+ R+
Sbjct: 1510 FRTVIIDEAAQAVELSSIIPLKYGC-ESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRM 1568
Query: 64 SYLGHPKH--LLSMQYRMHPSISFFPNSYFYENKIRDAP---TVRKRSYEKRFLPGPMYG 118
+ H + LLS+QYRM+P IS FP+ +FY +K+ D P V R + + P G
Sbjct: 1569 -FKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSRPWHE----DPQLG 1623
Query: 119 PYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVIA 178
Y F NV G S N+ E S ++ + L + ++ + IG+V+PY +QV
Sbjct: 1624 IYRFFNVHGTEAFSNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQ 1683
Query: 179 IQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALT 238
++ + KY I + + ++DGFQG E+DIII S VRS+ +G IGF +R+NVALT
Sbjct: 1684 LRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALT 1743
Query: 239 RARHCLWILGSERTLNHSESVWESLLDDAKAR 270
RA+ L+I+G+ + L E ++ SL++DAK R
Sbjct: 1744 RAKSSLYIVGNSKPL-MQEDIFYSLIEDAKTR 1774
>sp|Q8BV79|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1 OS=Mus musculus GN=Trank1
PE=2 SV=3
Length = 2999
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 152/515 (29%), Positives = 236/515 (45%), Gaps = 58/515 (11%)
Query: 618 IFNLSQNFRTHVGVLNLAQSVIELLYRFFPHSVDILKPETSLIYGEPPVLLESGNDENAI 677
I L QN+R+H G+LNLA V++LL +FP S D L ++ L G P LL+S + +
Sbjct: 1535 IHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLPRDSGLFDGPKPTLLDSCSVSDLA 1594
Query: 678 IKIFGNSGDAGGNMVGFGAEQVILVRDDCVRKEISNYVGKQALVLTIVESKGLEFQDVLL 737
I + GN + FGA QVILV ++ +++I +G ALVLT+ E+KGLEF DVLL
Sbjct: 1595 ILLRGNKRKT--QPIEFGAHQVILVANEKAKEKIPEELG-LALVLTVYEAKGLEFDDVLL 1651
Query: 738 YDFFGSSPLKNQWRVVYEYMKEQ-------ALLDSTLPASFPS------FNEAKHNVLCP 784
Y+FF S +W+++ + L+D L S PS N + +L
Sbjct: 1652 YNFFTDSEAYKEWKIISSFTPSSDSREEKWPLVDVPLERSSPSQARSLMVNPEMYKLLNG 1711
Query: 785 ELKQLYVAITRTRQRLWIWENMEEFSKPMFDYWKKRLLVQVRQLDDS--LAQAMQV-ASS 841
ELKQLY AITR R LWI++ E P F Y+ +R VQV + D++ +M V S+
Sbjct: 1712 ELKQLYTAITRARVNLWIFDENLEKRAPAFKYFIRRDFVQVVKTDENKDFDDSMFVKTST 1771
Query: 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKA--TGLKAASDHIRSSNPLEANV 899
P EW +G +++A C++K E + A T L S + +P E +
Sbjct: 1772 PYEWIIQGDYYAKHQCWKVAAKCYQKGDALEKEKLALAHYTALNMKS---KKFSPKEKEL 1828
Query: 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHA 959
E A + + + KC E++ + ++ E G+ + A
Sbjct: 1829 QYLELAKTYLECNEPKLSLKCLSYAKEFQLSAQLCER----------------LGKIRDA 1872
Query: 960 AEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGL-VRRSKEINK------- 1011
A Y R F + + + FD+ L+ Y ++ + + + V + +E+ K
Sbjct: 1873 AYFYKRSQCFQDAFRCFEQIQEFDLALRM--YCQEELFEEAAIAVEKYEEMLKNKTFPIP 1930
Query: 1012 -----VEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEA 1066
Q +L++ A Y N K MM + D + FLKS+ C E L
Sbjct: 1931 KLSYSASQFYLEAAA-KYLSANKSKEMMAVLSKLDVEDQL-VFLKSRKCLAEAAELLNRE 1988
Query: 1067 GNFMDAANIARLTGDILLTADLLQKAGNFKEACNL 1101
G +AA + + G LL A L +F+ +C L
Sbjct: 1989 GRREEAALLMKQHG-CLLEAARLTANKDFQASCLL 2022
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 15/166 (9%)
Query: 390 YIQVLKVWDILPLEDVQKLVTRLDNIFVKYTDEFINLCKEKCFEGNLEVPKTWAVTSNIV 449
Y +++++WDI+ D KL + I YT + ++K L+ V++N+
Sbjct: 967 YTEIIRIWDIV--LDHCKLSDSIMAICSAYTRGLSCVLRKK-----LKGINKGQVSANMK 1019
Query: 450 ---RFKNLADNESGSDMSGAASDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGR 506
R ++ ++ S D + S V +MKF+ S+ + ++L+D
Sbjct: 1020 IQKRIPRCYVEDTEAEKSLEQVDPEYFPPASAVETEYSIMKFHSFSTNMALNILNDMTA- 1078
Query: 507 ELDLPFEVTDEQLEMI-LFPRS---TFILGRSGTGKTTILTMKLFQ 548
++ PF V + + +I L P+ ++GRSGTGKTT +L++
Sbjct: 1079 TVEYPFRVGELEYAVIDLNPKPLEPIILIGRSGTGKTTCCLYRLWK 1124
>sp|O15050|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1
PE=2 SV=4
Length = 2925
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 150/503 (29%), Positives = 238/503 (47%), Gaps = 33/503 (6%)
Query: 618 IFNLSQNFRTHVGVLNLAQSVIELLYRFFPHSVDILKPETSLIYGEPPVLLESGNDENAI 677
I L QN+R+H G+LNLA V++LL +FP S D L ++ L G P +LES + +
Sbjct: 1461 IHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLPRDSGLFDGPKPTVLESCSVSDLA 1520
Query: 678 IKIFGNSGDAGGNMVGFGAEQVILVRDDCVRKEISNYVGKQALVLTIVESKGLEFQDVLL 737
I + GN + FGA QVILV ++ +++I +G ALVLTI E+KGLEF DVLL
Sbjct: 1521 ILLRGNKRKT--QPIEFGAHQVILVANETAKEKIPEELG-LALVLTIYEAKGLEFDDVLL 1577
Query: 738 YDFFGSSPLKNQWRVVYEYM------KEQALLDSTLPASFPSFNEAKHNVLCP------- 784
Y+FF S +W+++ + +E+ +P P ++ + ++ P
Sbjct: 1578 YNFFTDSEAYKEWKIISSFTPTSTDSREENRPLVEVPLDKPGSSQGRSLMVNPEMYKLLN 1637
Query: 785 -ELKQLYVAITRTRQRLWIWENMEEFSKPMFDYWKKRLLVQVRQLDDS--LAQAMQV-AS 840
ELKQLY AITR R LWI++ E P F Y+ +R VQV + D++ +M V S
Sbjct: 1638 GELKQLYTAITRARVNLWIFDENREKRAPAFKYFIRRDFVQVVKTDENKDFDDSMFVKTS 1697
Query: 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKA--TGLKAASDHIRSSNPLEAN 898
+P EW ++G +++A C++K E + A T L S + +P E
Sbjct: 1698 TPAEWIAQGDYYAKHQCWKVAAKCYQKGGAFEKEKLALAHDTALSMKSKKV---SPKEKQ 1754
Query: 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKH 958
+ E A + + + KC E++ + ++ ER GK + A + + YK
Sbjct: 1755 LEYLELAKTYLECKEPTLSLKCLSYAKEFQLSAQLC-ERLGK--IRDAAYFYKRSQCYKD 1811
Query: 959 AAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQ 1018
A + + F L + + ELF+ + +++ + T + SK Q +L+
Sbjct: 1812 AFRCFEQIQEFDLALKMYCQEELFEEAAIAVEKYEEMLKTKTLPI--SKLSYSASQFYLE 1869
Query: 1019 SCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARL 1078
+ A Y N K MM + D + FLKS+ E L G +AA + +
Sbjct: 1870 AAA-KYLSANKMKEMMAVLSKLDIEDQL-VFLKSRKRLAEAADLLNREGRREEAALLMKQ 1927
Query: 1079 TGDILLTADLLQKAGNFKEACNL 1101
G LL A L +F+ +C L
Sbjct: 1928 HG-CLLEAARLTADKDFQASCLL 1949
Score = 38.1 bits (87), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 390 YIQVLKVWDILPLEDVQKLVTRLDNIFVKYTDEFINLCKEKCFEGNL-EVPKTWAVTSNI 448
Y +++++WDI+ D KL + I Y + ++K N +V + I
Sbjct: 891 YTEIIRIWDIVL--DHCKLADSIKAICNAYNRGLSCVLRKKLKGINKGQVSANMKIQKRI 948
Query: 449 VR-FKNLADNESGSDMSGAASDCRSYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRE 507
R + + E G + + S V +MKF+ S+ + ++L+D
Sbjct: 949 PRCYVEDTEAEKGREHVNP----EYFPPASAVETEYNIMKFHSFSTNMAFNILNDTTA-T 1003
Query: 508 LDLPFEVTDEQLEMI-LFPRS---TFILGRSGTGKTTILTMKLFQ 548
++ PF V + + +I L PR ++GRSGTGKTT +L++
Sbjct: 1004 VEYPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWK 1048
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 155/286 (54%), Gaps = 26/286 (9%)
Query: 6 FVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY 65
V+IDEAAQ E+ + IP+Q C + +LVGD QLPA + S ++ + + +SLF+RL
Sbjct: 587 IVIIDEAAQAVETSTLIPIQHGC-KKVVLVGDPKQLPATIISPLAIKYKYDQSLFQRLQE 645
Query: 66 LGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINV 125
P H+L+ QYRMH I FP+ +FY++ + D P + R+ + P +GP F ++
Sbjct: 646 KNSP-HMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRA--THYHSNPFFGPLVFYDL 702
Query: 126 F-------GGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVIA 178
GG F EH C+ + M + + K + + IGI+SPY QV+A
Sbjct: 703 SWSTETKPGGGSVFNEHECK------MAMYLFQLFTKVYPDEDFASRIGIISPYRQQVLA 756
Query: 179 IQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRS--NNTGSIGFASTPQRINVA 236
++E + Y I+ + ++DGFQG E +III S VR+ IGF S +R+NVA
Sbjct: 757 LRE-IFKNYPGIS-----IDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVA 810
Query: 237 LTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNIDEDKDL 282
LTR R L ILG+ + L+ ++ W L+ + Q + +D+ L
Sbjct: 811 LTRPRSSLLILGNTKALSINKD-WNELIQHTQNNQQLIPVTKDQPL 855
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 151/266 (56%), Gaps = 4/266 (1%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY- 65
V+IDEAAQ E ++ IPL+ + ILVGD QLP V S + + +SLF R+
Sbjct: 1375 VIIDEAAQAVELDTIIPLRYGA-KKCILVGDPNQLPPTVLSKKAASLNYSQSLFVRIQKN 1433
Query: 66 LGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINV 125
+ LLS+QYRMHP IS FP+ FY++++ D + +++ ++ + P + Y +V
Sbjct: 1434 FSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKT-QQVWHVNPKFTQYRLFDV 1492
Query: 126 FGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVIAIQEKLGS 185
G S N+ EV ++ ++ L + + IG+++PY +Q+ ++
Sbjct: 1493 RGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKV 1552
Query: 186 KYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRARHCLW 245
KY K + ++++DGFQG E+DII S V+S + IGF +R+NVALTRAR L
Sbjct: 1553 KYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLL 1612
Query: 246 ILGSERTLNHSESVWESLLDDAKARQ 271
I+G+ TL ++ +W SL+DDA +R+
Sbjct: 1613 IIGNMETLK-TDDLWGSLVDDALSRK 1637
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 156/276 (56%), Gaps = 11/276 (3%)
Query: 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFER 62
+ + V+IDE+ Q E E IP+ + + ILVGD QL ++ + +A +SLFER
Sbjct: 565 KFRTVLIDESTQASEPECLIPI-VKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFER 623
Query: 63 LSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYG-PYS 121
L LGH L +QYRM+P +S FP++ FYE +++ T+ +R+ P P+ G P
Sbjct: 624 LISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMM 683
Query: 122 FINVFGGREEFIEH--SCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVIAI 179
F + GREE + S N +E +I+ L++ V+ ++ IG+++PY Q I
Sbjct: 684 FWANY-GREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQ---IGVITPYEGQRAYI 739
Query: 180 QE--KLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237
+ ++ +K V+V S+D FQG E+D II+S VR+N +IGF P+R+NV L
Sbjct: 740 LQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGL 799
Query: 238 TRARHCLWILGSERTLNHSESVWESLLDDAKARQCF 273
TRA++ L ILG+ R+L + ++W LL + + C
Sbjct: 800 TRAKYGLVILGNPRSLARN-TLWNHLLIHFREKGCL 834
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 157/280 (56%), Gaps = 13/280 (4%)
Query: 1 MEQLKF--VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRS 58
+ ++KF V+IDE+ Q E E IPL L C Q +LVGD QL ++ + + +A +S
Sbjct: 610 LSKMKFRNVLIDESTQSAEPECMIPLVLGCKQ-VVLVGDHKQLGPVIMNKKAAKAGLNQS 668
Query: 59 LFERLSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMY- 117
LFERL L L +QYRMHP +S FP++ FYE +++ T +R + P P+
Sbjct: 669 LFERLVKLQFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPE 728
Query: 118 GPYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ- 175
P F + G E S N E + V KI+ +KA V+ + IG+++PY Q
Sbjct: 729 TPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPAD---IGVITPYEGQR 785
Query: 176 --VIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRI 233
++ + G+ ++K + V+V S+D FQG E+D I++S VRSN IGF S P+R+
Sbjct: 786 SYIVNTMQNTGT-FKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRL 844
Query: 234 NVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCF 273
NVALTRA++ L I+G+ + L E +W LL K ++C
Sbjct: 845 NVALTRAKYGLVIIGNPKVLCKHE-LWHHLLVHFKDKKCL 883
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 152/276 (55%), Gaps = 11/276 (3%)
Query: 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFER 62
+ + V+IDE+ Q E E IPL L ++ +LVGD QL ++ + A +SLFER
Sbjct: 649 RFRQVLIDESTQATEPECLIPLVL-GVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFER 707
Query: 63 LSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSF 122
L LG L +QYRMHP++S FP++ FYE +++ T+ +R P P+ F
Sbjct: 708 LVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMF 767
Query: 123 INVFGGREEFIEH--SCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ---VI 177
V G+EE S N E + V K++ K+ V + IG+++PY Q ++
Sbjct: 768 FYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQ---IGVITPYEGQRAYIV 824
Query: 178 AIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237
+ GS +++ ++V S+D FQG E+D II+S VRSN IGF + P+R+NVAL
Sbjct: 825 NYMARNGSLRQQLYK-EIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVAL 883
Query: 238 TRARHCLWILGSERTLNHSESVWESLLDDAKARQCF 273
TRAR+ + ILG+ + L+ + +W LL K +C
Sbjct: 884 TRARYGIVILGNPKVLS-KQPLWNGLLTHYKEHECL 918
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 13/307 (4%)
Query: 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFER 62
Q + ++IDE+ Q E E +P+ L Q ILVGD QL +V + +A +SLFER
Sbjct: 640 QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLGPVVMCKKAAKAGLSQSLFER 698
Query: 63 LSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSF 122
L LG L +QYRMHP++S FP++ FYE +++ T R + P F
Sbjct: 699 LVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMF 758
Query: 123 INVFGGREEFIEH--SCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ---VI 177
V G+EE S N E + V KI L KA + + IGI++PY Q ++
Sbjct: 759 FYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLV 815
Query: 178 AIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237
+ GS + K+ V++ S+D FQG E+D II+S VR+N IGF + P+R+NVAL
Sbjct: 816 QYMQFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL 874
Query: 238 TRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNIDEDKDLAKAILEVKKELDELD 297
TRAR+ + I+G+ + L+ + +W LL+ K ++ +L +++++ K +L
Sbjct: 875 TRARYGVIIVGNPKALS-KQPLWNHLLNYYKEQKVLVE-GPLNNLRESLMQFSKP-RKLV 931
Query: 298 ELLNPGS 304
+NPG+
Sbjct: 932 NTINPGA 938
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 164/307 (53%), Gaps = 13/307 (4%)
Query: 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFER 62
Q + ++IDE+ Q E E +P+ L Q ILVGD QL +V + +A +SLFER
Sbjct: 635 QFRSILIDESTQATEPECMVPVVLGAKQ-LILVGDHCQLGPVVMCKKAAKAGLSQSLFER 693
Query: 63 LSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSF 122
L LG L +QYRMHP++S FP++ FYE +++ T R + P F
Sbjct: 694 LVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMF 753
Query: 123 INVFGGREEFIEH--SCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ---VI 177
V G+EE S N E + V KI L KA + + IGI++PY Q ++
Sbjct: 754 FYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLV 810
Query: 178 AIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237
+ GS + K+ V++ S+D FQG E+D II+S VR+N IGF + P+R+NVAL
Sbjct: 811 QYMQFSGSLHTKLYQ-EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL 869
Query: 238 TRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNIDEDKDLAKAILEVKKELDELD 297
TRAR+ + I+G+ + L+ + +W LL K ++ +L +++++ K +L
Sbjct: 870 TRARYGVIIVGNPKALS-KQPLWNHLLSYYKEQKALVE-GPLNNLRESLMQFSKP-RKLV 926
Query: 298 ELLNPGS 304
+NPG+
Sbjct: 927 NTVNPGA 933
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 153/278 (55%), Gaps = 14/278 (5%)
Query: 1 MEQLKF--VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRS 58
+ ++KF ++IDE+ Q E E +P+ L Q ILVGD QL +V + A +S
Sbjct: 606 LSRVKFTSILIDESMQSTEPECMVPVVLGAKQ-LILVGDHCQLGPVVMCKKAARAGLSQS 664
Query: 59 LFERLSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYG 118
LFERL LG L +QYRMHP +S FP+++FYE +++ R + F P P
Sbjct: 665 LFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDF-PWPQPE 723
Query: 119 PYSFINVFGGREEFIEH--SCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ- 175
F V G+EE S N E + V KI KA ++ ++ IGI++PY Q
Sbjct: 724 RPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQ---IGIITPYEGQR 780
Query: 176 --VIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRI 233
++ + GS + ++ +++ S+D FQG E+DIII+S VRSN IGF + P+R+
Sbjct: 781 AYLVQYMQYQGSLHSRLYQ-EIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRL 839
Query: 234 NVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQ 271
NVALTRA+ + I+G+ + L + +W LL+ K R+
Sbjct: 840 NVALTRAKFGIIIVGNPKVLA-KQQLWNHLLNFYKDRK 876
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 143/258 (55%), Gaps = 14/258 (5%)
Query: 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFER 62
+ + V+IDEA Q E E IPL L Q +LVGD QL +V + A +SLFER
Sbjct: 557 KFRSVLIDEATQASEPECMIPLVLGAKQ-VVLVGDHQQLGPVVMNKKVALASLSQSLFER 615
Query: 63 LSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSF 122
L LG+ L +QYRMHP +S FP++ FYE +++ T +R R + P P S
Sbjct: 616 LIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERI--ARHVDFPWIQPDSP 673
Query: 123 INVFG--GREEFIEH--SCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ--- 175
+ + G+EE S N E S KI+ ++ V ++ IGIV+PY Q
Sbjct: 674 LMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQ---IGIVTPYDGQRSY 730
Query: 176 VIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINV 235
++ + GS + + AV+V S+D FQG E+D II+S VRS+ IGF + P+R+NV
Sbjct: 731 IVQYMQNNGSMQKDLYK-AVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNV 789
Query: 236 ALTRARHCLWILGSERTL 253
ALTRA++ + +LG+ + L
Sbjct: 790 ALTRAKYGVIVLGNPKVL 807
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 161/319 (50%), Gaps = 31/319 (9%)
Query: 1 MEQLKF--VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRS 58
+ Q +F ++IDE+ Q E E IPL + Q ILVGD QL ++ +A +S
Sbjct: 695 LSQFRFPHILIDESTQASEPECLIPLMMGAKQ-VILVGDHRQLGPVLLCKKVVDAGLSQS 753
Query: 59 LFERLSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFL-PGPMY 117
LFERL LGH L++QYRMHPS++ FP++ YE ++ + R + +F P P
Sbjct: 754 LFERLISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPK- 812
Query: 118 GPYSFINVFGGRE------EFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSP 171
P F N G E FI N E S+ KI+ + + IGI++P
Sbjct: 813 DPMFFFNCTGSEEISSSGTSFI-----NTTEASICEKIVTKFLELGSLPGQ---IGIITP 864
Query: 172 YSAQVIAIQEKL--GSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFAST 229
Y Q I + K +++V S+D FQG E+D II+S VRSN+ IGF
Sbjct: 865 YEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQD 924
Query: 230 PQRINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNIDEDKDLA-----K 284
P+R+NVALTRAR L ILG+ + L+ + +W SL+ K + N+ + LA
Sbjct: 925 PRRLNVALTRARFGLIILGNAKVLS-KDPLWNSLISHFKNK----NVLVEGSLANLKQSP 979
Query: 285 AILEVKKELDELDELLNPG 303
IL+ K+L +L PG
Sbjct: 980 VILQKPKKLYGQGKLPIPG 998
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 21/276 (7%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL 66
V++DEA Q E E+ PL C ILVGD QLP V S + E + +S+ R L
Sbjct: 2178 VIVDEAGQSCEIETLTPLIHRC-NKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCRL 2236
Query: 67 GH-----------PKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGP 115
P L++QYRMHP I FP++Y Y ++ +++ R
Sbjct: 2237 LEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLK----TNRQTEAIRCSSDW 2292
Query: 116 MYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ 175
+ PY +V G E S N+ E+ +VM+I++ L K + +IGI++ Y AQ
Sbjct: 2293 PFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIK-LIKDKRKDVSFRNIGIITHYKAQ 2351
Query: 176 VIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNN-TGSIGFASTPQRIN 234
IQ+ L ++++ +V ++D FQG ++D +I++ VR+N+ GSIGF ++ QR+N
Sbjct: 2352 KTMIQKDLDKEFDRKG--PAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLN 2409
Query: 235 VALTRARHCLWILGSERTLNHSESVWESLLDDAKAR 270
V +TRA++ L+ILG RTL ++ W L+ DA+ R
Sbjct: 2410 VTITRAKYSLFILGHLRTLMENQH-WNQLIQDAQKR 2444
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 151/276 (54%), Gaps = 13/276 (4%)
Query: 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFER 62
Q + ++IDE+ Q E + P++L Q +++G+ + V + +A +SLFER
Sbjct: 611 QFRSILIDESTQATEPKCIGPVELGAKQ--LILGEITASWSCVMCKKAAKAGLSQSLFER 668
Query: 63 LSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSF 122
L LG L +QYRMHP++S FP++ FYE +++ T R + P F
Sbjct: 669 LVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEKPMF 728
Query: 123 INVFGGREEFIEH--SCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ---VI 177
V G+EE S N E + V KI L KA + + IGI++PY Q ++
Sbjct: 729 FYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ---IGIITPYEGQRSYLV 785
Query: 178 AIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237
+ GS + K+ + V++ S+D FQG E+D II+S VR+N IGF + P+R+NVAL
Sbjct: 786 QYMQFSGSLHTKL--YQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL 843
Query: 238 TRARHCLWILGSERTLNHSESVWESLLDDAKARQCF 273
TRA++ + I+G+ + L+ + +W +LL++ K ++
Sbjct: 844 TRAKYGVIIVGNPKALS-KQPLWNNLLNNYKEQKVL 878
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 167/337 (49%), Gaps = 25/337 (7%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL 66
V++DEA Q E E+ PL C ILVGD QLP V S + E + +S+ R L
Sbjct: 2154 VIVDEAGQSCEVETLSPLIHRC-NKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKL 2212
Query: 67 GH-----------PKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGP 115
P L++QYRMHP I FP++Y Y ++ + + R
Sbjct: 2213 LEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLK----TNRLTESIRCSSEW 2268
Query: 116 MYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ 175
+ PY +V G E S N+ E+ +VM+I++ L K + +IGI++ Y AQ
Sbjct: 2269 PFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIK-LIKEKRKDISFRNIGIITHYKAQ 2327
Query: 176 VIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNT-GSIGFASTPQRIN 234
IQ+ L +++K +V ++D FQG ++D II++ VR++ GSIGF ++ QR+N
Sbjct: 2328 KTMIQKDLEKEFDKKG--PAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLN 2385
Query: 235 VALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNIDED--KDLAKAILEVKKE 292
V +TRA++ L+ILG RTL ++ W L+ DA+ R + + A IL++K
Sbjct: 2386 VTITRAKYSLFILGHLRTLMENQH-WYELIQDAQKRGAIIKTSDPNYRHDAMKILKLKPV 2444
Query: 293 LDELDELLNPGSILFRSERWKVNFSDNFLRSFKKLTS 329
L L +P + + R + N L S TS
Sbjct: 2445 LQR--SLTHPPATAPEAPRPQGGLPSNRLDSGLATTS 2479
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 147/279 (52%), Gaps = 19/279 (6%)
Query: 5 KFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLS 64
+ V+IDE+ Q E E + + + ++ +LVGD QL +V + A +SLFERL
Sbjct: 605 RTVLIDESTQATEPEILVSI-MRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLV 663
Query: 65 YLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFIN 124
LG L +QYRMHP +S FP++ FY+ +++ T R P +F
Sbjct: 664 LLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPAFFW 723
Query: 125 VFGGREEFIEH--SCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ------V 176
G EE S N E + V K++ L KA V+ + IG+++ Y Q
Sbjct: 724 HCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQ---IGVITSYEGQRSFIVNY 780
Query: 177 IAIQEKLGSK-YEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINV 235
+ Q L SK YE V++ S+D FQG E+D II++ VRSN+ IGF S P+R+NV
Sbjct: 781 MHTQGTLNSKLYEN-----VEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNV 835
Query: 236 ALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFF 274
A+TRA++ L ++G+ + L + +W L++ K+++ +
Sbjct: 836 AITRAKYGLVLVGNAKVLARHD-LWHELINHYKSKEMLY 873
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 147/275 (53%), Gaps = 16/275 (5%)
Query: 1 MEQLKF--VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESS-VSGEAYFGR 57
M LKF VV+DE +Q+ E S +P+ + ILVGD QLP ++ S + E +
Sbjct: 620 MNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQ 679
Query: 58 SLFERLSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMY 117
+LF+RL +GH LL QYR HP+IS N FY+ + + T +RS +LP
Sbjct: 680 TLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPT--- 736
Query: 118 GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVI 177
F NV G + ++S N+ E + +K++++L + + IG+++ Y +Q+
Sbjct: 737 --LCFYNVKGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGS---MIGVITLYKSQMY 791
Query: 178 AIQEKLGS-KYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVA 236
+ L + + V+V ++D FQG E++III+S VR T +GF + +R+NVA
Sbjct: 792 KLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVR---TRQVGFIDSEKRMNVA 848
Query: 237 LTRARHCLWILGSERTLNHSESVWESLLDDAKARQ 271
LTR + L I+G+ L ++ +W ++ + R+
Sbjct: 849 LTRGKRHLLIVGNLACLRKNQ-LWGRVIQHCEGRE 882
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 154/319 (48%), Gaps = 59/319 (18%)
Query: 1 MEQLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLF 60
+++ V++DEA Q E+ + +PL LP I++ + VGDE QL SS S SLF
Sbjct: 811 IKECPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQL-----SSFSNIPQLETSLF 865
Query: 61 ERLSYLGHPKH--LLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYG 118
ER+ G K+ +L QYRMHP IS FP Y +++D T ++++ PG +
Sbjct: 866 ERVLSNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKDGVTDEQKAW-----PGVQH- 919
Query: 119 PYSFINVFGGREEFIEHSCRNMV--------EVSVVMKILRNLYKAWVESKEKL-SIGIV 169
P F G E + + R++V E ++KI++ L ++ K L IG++
Sbjct: 920 PLFFYQCDLGPESRVRSTQRDIVGFTYENKHECVEIVKIIQIL---MLDKKVPLEEIGVI 976
Query: 170 SPYSAQ-------------VIAIQEKLGSKYEKIAGF---------------------AV 195
+PYSAQ + Q + +Y++I F +
Sbjct: 977 TPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGL 1036
Query: 196 KVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRARHCLWILGSERTLNH 255
V ++D FQG E+ II S VR+N IGF +R+NVALTRA+H L ++G++ L
Sbjct: 1037 HVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRK 1096
Query: 256 SESVWESLLDDAKARQCFF 274
+ +W+ + + ++ F
Sbjct: 1097 GDPLWKDYITYLEEQEVIF 1115
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 145/289 (50%), Gaps = 37/289 (12%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERL--S 64
V+IDEA+Q E + IPL + IL GD +QL V+S Y S+FERL S
Sbjct: 386 VIIDEASQALEPQCWIPLL--GMNKVILAGDHMQLSPNVQSK---RPYI--SMFERLVKS 438
Query: 65 YLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSY-------EKRFLPGPMY 117
K L++QYRMH IS FP+ FY++K+ A V+KR E P+Y
Sbjct: 439 QGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIY 498
Query: 118 GPYSFINVFGGREE---------FIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGI 168
F + G +E F + S N E +V + L +A +E+K+ I +
Sbjct: 499 ----FYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKD---IAV 551
Query: 169 VSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFAS 228
V+PY+AQV I++ L K G V++ S+D QG E++ II S VRSN+ +GF +
Sbjct: 552 VTPYNAQVALIRQLLKEK-----GIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLA 606
Query: 229 TPQRINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNID 277
+R+NVA+TR + L ++G T+ + + +D + +ID
Sbjct: 607 EKRRLNVAITRPKRHLCVIGDSNTVKWASEFFHQWVDFLEENAIVMDID 655
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 146/276 (52%), Gaps = 34/276 (12%)
Query: 6 FVVIDEAAQLKESESAIPL-QLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLS 64
VV+DE AQ E+ IPL + P IL GD QLP S + A RSL ERL+
Sbjct: 370 VVVVDECAQALEASCWIPLLKAP---KCILAGDHKQLPPTTVSHKAALAGLSRSLMERLA 426
Query: 65 YLGHPKH------LLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPG---- 114
KH +L++QYRMH +I+ + + Y ++ P+V + + LPG
Sbjct: 427 E----KHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVA--GHLLKDLPGVADT 480
Query: 115 -PMYGPYSFINVFGGR----EEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIV 169
P I+ G EE S N EV +V ++ L A V++ + I ++
Sbjct: 481 EETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGD---IAVI 537
Query: 170 SPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFAST 229
+PY+ QV +++ L +K+ ++ ++KS+DGFQG E++ +I++ VRSN G +GF +
Sbjct: 538 APYNLQVDLLRQSLSNKHPEL-----EIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAE 592
Query: 230 PQRINVALTRARHCLWILGSERTLNHSESVWESLLD 265
+RINVA+TRAR + ++ T+N + + ++L+D
Sbjct: 593 DRRINVAVTRARRHVAVICDSHTVN-NHAFLKTLVD 627
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 145/272 (53%), Gaps = 26/272 (9%)
Query: 6 FVVIDEAAQLKESESAIPL-QLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERL- 63
VV+DE AQ E+ IPL + P IL GD QLP S + A RSL ERL
Sbjct: 370 VVVVDECAQALEASCWIPLLKAP---KCILAGDHRQLPPTTISHKAALAGLSRSLMERLV 426
Query: 64 -SYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPG-----PMY 117
+ +L++QYRMH +I+ + + Y ++ P+V + + LPG
Sbjct: 427 EKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVA--GHLLKDLPGVADTEETS 484
Query: 118 GPYSFINVFG-GREEFIEHSCR---NMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYS 173
P I+ G G E E + N EV +V ++ L A V + + I +++PY+
Sbjct: 485 VPLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGD---IAVIAPYN 541
Query: 174 AQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRI 233
QV +++ L +K+ ++ ++KS+DGFQG E++ +I++ VRSN G +GF + +RI
Sbjct: 542 LQVDLLRQSLSNKHPEL-----EIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRI 596
Query: 234 NVALTRARHCLWILGSERTLNHSESVWESLLD 265
NVA+TRAR + ++ RT+N + + ++L+D
Sbjct: 597 NVAVTRARRHVAVICDSRTVN-NHAFLKTLVD 627
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 144/276 (52%), Gaps = 34/276 (12%)
Query: 6 FVVIDEAAQLKESESAIPL-QLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLS 64
VV+DE AQ E+ IPL + P IL GD QLP S + A RSL ERL+
Sbjct: 370 VVVVDECAQALEASCWIPLLKAP---KCILAGDHRQLPPTTVSHRAALAGLSRSLMERLA 426
Query: 65 YLGHPKH------LLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPG---- 114
KH +L++QYRMH +I + + Y + P+V + + LPG
Sbjct: 427 E----KHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVA--GHLLKDLPGVTDT 480
Query: 115 -PMYGPYSFINVFGGR----EEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIV 169
P I+ G EE S N EV +V ++ L A V++ + I ++
Sbjct: 481 EETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGD---IAVI 537
Query: 170 SPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFAST 229
+PY+ QV +++ L +K+ ++ ++KS+DGFQG E++ ++++ VRSN G +GF +
Sbjct: 538 APYNLQVDLLRQSLSNKHPEL-----EIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAE 592
Query: 230 PQRINVALTRARHCLWILGSERTLNHSESVWESLLD 265
+RINVA+TRAR + ++ T+N + + E+L+D
Sbjct: 593 DRRINVAVTRARRHVAVICDSHTVN-NHAFLETLVD 627
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 146/287 (50%), Gaps = 26/287 (9%)
Query: 6 FVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLS- 64
VVIDE AQ E+ IPL + IL GD QLP S + A SL ERL+
Sbjct: 371 VVVIDECAQALEASCWIPLLK--ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAE 428
Query: 65 -YLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYG----- 118
Y L++QYRMH +I + + Y ++ +V + + R LPG
Sbjct: 429 EYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVAR--HLLRDLPGVAATEETGV 486
Query: 119 PYSFINVFGGR----EEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSA 174
P ++ G EE E S N EV +V ++ L A V +++ I +VSPY+
Sbjct: 487 PLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARD---IAVVSPYNL 543
Query: 175 QVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRIN 234
QV +++ L ++ ++ ++KS+DGFQG E++ +I+S VRSN G +GF + +RIN
Sbjct: 544 QVDLLRQSLVHRHPEL-----EIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRIN 598
Query: 235 VALTRARHCLWILGSERTLNHS---ESVWESLLDDAKARQCFFNIDE 278
VA+TRAR + ++ RT+N+ +++ E + R F +D+
Sbjct: 599 VAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDD 645
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 143/295 (48%), Gaps = 44/295 (14%)
Query: 4 LKFVVIDEAAQLKESESAIPL-QLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFER 62
++ +++DEA E E+ IPL Q P + +L+GD QL +V++ RSLFER
Sbjct: 2354 VRQILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNLGLDRSLFER 2413
Query: 63 LSYLGHPKHLLSMQYRMHPSISFFPNSYFYENK------IRDAPTVRKRSYEKRFLPGPM 116
H+L QYRMH I FP+ FY++K +R P+V + G
Sbjct: 2414 YH---EDAHMLDTQYRMHEGICAFPSVAFYKSKLKTWQGLRRPPSVLGHA-------GKE 2463
Query: 117 YGPYSFINVFGGREEFI-------EHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIV 169
P F +V G + E+S N+ EV+ V++I + L + E I ++
Sbjct: 2464 SCPVIFGHVQGHERSLLVSTDEGNENSKANLEEVAEVVRITKQLTLG--RTVEPQDIAVL 2521
Query: 170 SPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRS--------NNT 221
+PY+AQ I + L + E IAG A V SI QG E +++STVR+ T
Sbjct: 2522 TPYNAQASEISKAL--RREGIAGVA--VSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPT 2577
Query: 222 GS-----IGFASTPQRINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQ 271
S +GF P ++NVA+TRA+ L ++G L +W SLLD +A+Q
Sbjct: 2578 KSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGDHLLLRCC-PLWRSLLDFCEAQQ 2631
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 41/291 (14%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHA---ILVGDEVQLPAMVESSVSGEAYFGRSLFERL 63
++IDEAAQ+ E E+ PL H +L GD +Q+ + S A +L RL
Sbjct: 664 ILIDEAAQMLECEALTPLAY--ASHGTRLVLAGDHMQVTPRLFSVARARAA-EHTLLHRL 720
Query: 64 SYLGHPK--HLLSMQ--------YRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLP 113
+L + + H ++ Q YR +I F + +FY K + R + P
Sbjct: 721 -FLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRHFYVAK---GNPIHARG---KVPP 773
Query: 114 GPMYGPYSFINVFGGREEFIE-HSCRNMVEVSVVMKILRNLYKAWVE---SKEKLSIGIV 169
P + P F +V G + + S N+ E++ V++ ++ Y W +E+ I +V
Sbjct: 774 HPRHYPLMFCHVAGSPDRDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVV 833
Query: 170 SPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNT----GSIG 225
S + AQV A++++L + V V S + G + ++++STV + + G++
Sbjct: 834 S-HGAQVSALRQELRRRDLG----QVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALA 888
Query: 226 --FASTPQRINVALTRARHCLWILGSERTL---NHSESVWESLLDDAKARQ 271
F + + +N LTRA+ L ++G L +WES + + R
Sbjct: 889 PEFFTDARVLNTVLTRAQSQLVVVGDAVALCSFGACGKLWESFIRECVERH 939
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 142/275 (51%), Gaps = 33/275 (12%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL 66
+VIDE +Q E IP+ + I+ GD QLP V +S ++LFERL
Sbjct: 398 IVIDEGSQAMEPSCLIPIVKG--RKLIMAGDHKQLPPTV---LSENEELKKTLFERL-IK 451
Query: 67 GHPK--HLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRK-------RSYEKRFLPGPMY 117
+P+ +L +QYRM+ I FPN FY NK++ +V+ + E + +
Sbjct: 452 KYPEFSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRDII 511
Query: 118 G--PYSFINVFG-GREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSA 174
P FINV G R++ S N+ E V++I++ L K K+ +++PY A
Sbjct: 512 NEIPVQFINVEGIERKDKESPSYYNIEEAEKVLEIVKKLVKY------KIPTNVITPYDA 565
Query: 175 QVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRIN 234
QV ++ +L ++ ++V ++DGFQG E + I+IS VR+ N GF +R+N
Sbjct: 566 QVRYLR-RLFEEH----NIDIEVNTVDGFQGRENEAIVISFVRTKN---FGFLKDLRRLN 617
Query: 235 VALTRARHCLWILGSERTLNHSESVWESLLDDAKA 269
VA+TRA+ L ++G+E L + V+ ++ AK+
Sbjct: 618 VAITRAKRKLILIGNENLLKQ-DKVYNEMIKWAKS 651
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 140/297 (47%), Gaps = 34/297 (11%)
Query: 6 FVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY 65
F ++DEA+Q+ + PL +LVGD QLP +V+S+ + E SLF+RL
Sbjct: 759 FCIVDEASQISQPICLGPLFFA--DRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLER 816
Query: 66 LGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDA-----------PTVR--------KRS 106
L++QYRM+ I N YE ++ A P ++ + S
Sbjct: 817 NQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRES 876
Query: 107 YEKRFLPGPM--YGPYSFINV--FGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKE 162
E ++ + P F+N E + N +E +V + + KA +
Sbjct: 877 QESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSD 936
Query: 163 KLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTG 222
IGI++PY Q+ I S ++ AV+V ++D +QG ++ +II+S VRSN G
Sbjct: 937 ---IGIIAPYRQQLKMISNYFNS----LSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDG 989
Query: 223 SIG-FASTPQRINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNIDE 278
+G +R+NVALTRA+H L +LG TLN + + E L+ + K +++ E
Sbjct: 990 KLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCL-EQLICNLKTENQIYDLPE 1045
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 35/286 (12%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHAILV--GDEVQLPAMVESSVSGEAYFGRSLFERL- 63
+++DEA Q E E+ I + C+ ++V GD QL ++ S + G+S ERL
Sbjct: 542 ILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLF 601
Query: 64 --SYL--GHPKHL--LSMQYRMHPSISFFPNSYFYENKI----RDAPTVRKRSYEKRFLP 113
Y G ++ L YR HP I P+ FY+ ++ D +V FLP
Sbjct: 602 ECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLA---SLNFLP 658
Query: 114 GPMYGPYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPY 172
+ P F + G E E S N +E+S V++ ++ L + ++ IG+++PY
Sbjct: 659 NKEF-PMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTAN--DCVQEEDIGVITPY 715
Query: 173 SAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRS-------NNTGSIG 225
QV+ I+E L +++ VKV S++ FQG E+ +IIISTVRS + +G
Sbjct: 716 RQQVMKIKEVL----DRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLG 771
Query: 226 FASTPQRINVALTRARHCLWILGSE----RTLNHSESVWESLLDDA 267
F S P+R NVA+TRA L I+G+ + +N ++ +W + ++A
Sbjct: 772 FLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNA 817
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 37/269 (13%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHA------ILVGDEVQLPAMVESSVSGEAYFG--RS 58
++IDE +Q E + IPL I H +L GD QLP +++ +
Sbjct: 392 LIIDEVSQAMEPQCWIPL----IAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETT 447
Query: 59 LFERLSYLGHPKH----LLSMQYRMHPSISFFPNSYFYENKIR-----------DAPTVR 103
LF+R+ + PK L++QYRM+ I FP+ Y K+ D PTV
Sbjct: 448 LFDRIIKI-FPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVD 506
Query: 104 KRSYEK---RFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVES 160
E +P Y E I S N E+++V + + NL V
Sbjct: 507 ATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPE 566
Query: 161 KEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNN 220
SIG++SPY+AQV +++ + ++++ +++ ++DGFQG E+D+II+S VRSN
Sbjct: 567 N---SIGVISPYNAQVSHLKKLI---HDELKLTDIEISTVDGFQGREKDVIILSLVRSNE 620
Query: 221 TGSIGFASTPQRINVALTRARHCLWILGS 249
+GF +R+NVA+TR R L ++G+
Sbjct: 621 KFEVGFLKEERRLNVAMTRPRRQLVVVGN 649
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 38/262 (14%)
Query: 5 KFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQL-PAMVESSVSGEAYFGRSLFERL 63
+ V+++EAA++ E+ + L C QH IL+GD QL P+ ++ SLFERL
Sbjct: 994 RIVIVEEAAEVLEAHTIATLSKAC-QHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERL 1052
Query: 64 SYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFI 123
+ P L+ Q+RM P I+ + Y++ + + P+V K YE+ + G S
Sbjct: 1053 VKVNIPFVRLNYQHRMRPEIARLLTPHIYQD-LENHPSVLK--YEQ------IKGVSS-- 1101
Query: 124 NVFGGREEFIEH-----------SCRNMVEVSVVMKILRNLY-KAWVESKEKLSIGIVSP 171
N+F F+EH S +N E V+++ + L + ++ S+ I I++
Sbjct: 1102 NLF-----FVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQ----ITILTT 1152
Query: 172 YSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQ 231
Y+ Q+ +++ + K AG +KV +D +QG E DII++S VRSN G +GF P
Sbjct: 1153 YTGQLFCLRKLMPVK--TFAG--IKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPN 1208
Query: 232 RINVALTRARHCLWILGSERTL 253
RI VAL+RA+ ++ +G+ + L
Sbjct: 1209 RICVALSRAKKGMYCIGNMQML 1230
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 38/262 (14%)
Query: 5 KFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQL-PAMVESSVSGEAYFGRSLFERL 63
+ V+++EAA++ E+ + L C QH IL+GD QL P+ ++ SLFERL
Sbjct: 1001 RIVIVEEAAEVLEAHTIATLSKAC-QHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERL 1059
Query: 64 SYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFI 123
+ P L+ Q+RM P I+ + Y++ + + P+V K YEK + G S
Sbjct: 1060 VKVNIPFVRLNYQHRMCPEIARLLTPHIYQD-LENHPSVLK--YEK------IKGVSS-- 1108
Query: 124 NVFGGREEFIEH-----------SCRNMVEVSVVMKILRN-LYKAWVESKEKLSIGIVSP 171
N+F F+EH S +N E V+++ + L + ++ S+ I I++
Sbjct: 1109 NLF-----FVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQ----ITILTT 1159
Query: 172 YSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQ 231
Y+ Q+ +++ + +K AG V+V +D +QG E DII++S VRSN G +GF
Sbjct: 1160 YTGQLFCLRKLMPAK--TFAG--VRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISN 1215
Query: 232 RINVALTRARHCLWILGSERTL 253
RI VAL+RA+ ++ +G+ + L
Sbjct: 1216 RICVALSRAKKGMYCIGNMQML 1237
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 23/263 (8%)
Query: 5 KFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQL-PAMVESSVSGEAY-FGRSLFER 62
K I+EAA + E IP P ++ +L+GD QL P ++ + + S+FER
Sbjct: 706 KICFIEEAADVLEG-PIIPAVFPSLEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFER 764
Query: 63 LSYLGHPKHLLSMQYRMHPSISFFPNSYF-----YENKIRDAPTVRKRSYEKRFLPGPMY 117
L L+MQ RMHP I +S + YE + P++ +RF +
Sbjct: 765 LVENDMEYTRLTMQRRMHPQIRRLVSSVYEDLSDYE-ITKYWPSIPGMGEIRRF-----F 818
Query: 118 GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVI 177
+S I G I N+ E ++++ L VE ++ I ++ Y+AQ
Sbjct: 819 LTHSRIEDNDGFASKI-----NLFEAQMLVQFAVYLINNGVEPQK---ITCLTFYAAQKD 870
Query: 178 AIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237
I+ L + F +KV ++DG+QG E D++++S VR+N+ +GF S+P R+ V+L
Sbjct: 871 LIERLLSESLNREKHF-IKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSL 929
Query: 238 TRARHCLWILGSERTLNHSESVW 260
+RAR L+I G+ + + S +W
Sbjct: 930 SRARRGLFIFGNAQLVAESNPLW 952
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 25/278 (8%)
Query: 2 EQLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFE 61
+Q F ++DEA+Q+ + PL C + +LVGD QLP +V++S + + SLF+
Sbjct: 723 KQFDFCIVDEASQISQPICLGPLF--CSKRFVLVGDHQQLPPLVQNSEARDLGMSESLFK 780
Query: 62 RLSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYS 121
RL + L++QYRM+ I N YE K+ K S LP
Sbjct: 781 RLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGS--EKVSNATANLP-------- 830
Query: 122 FINVFGGREEFIEHSCRNMVEVSVVMK--ILRNLYKAWVESKEKLSIGIVSPYSAQVIAI 179
N+ + EF + S + EV K N KA + IGI+SPY Q+ I
Sbjct: 831 --NLKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCRPSD---IGIISPYRHQLKVI 885
Query: 180 QEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIG-FASTPQRINVALT 238
+ + E V+V +ID +QG ++ III+S VR++N ++G +R+NVA+T
Sbjct: 886 TDLMARLKEN----RVEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAIT 941
Query: 239 RARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNI 276
RA+H L ++G +L + E LL ++ FN+
Sbjct: 942 RAKHKLIMVGCVPSLRRYPPL-EKLLCHLQSEAMIFNL 978
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 40/306 (13%)
Query: 1 MEQLKFVVIDEAAQLKESESAIPLQL---------PCIQHAILVGDEVQLPAMVESSVSG 51
++ + IDEA E ES + + P Q +L GD QL ++ S ++
Sbjct: 636 IDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQ-LVLAGDPRQLGPVLRSPLTQ 694
Query: 52 EAYFGRSLFERLSYLGH----------PKHLLSM--QYRMHPSISFFPNSYFYENKIRDA 99
+ G SL ERL P+ + + YR HP+I PN +YE +++
Sbjct: 695 KHGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQAC 754
Query: 100 PTVRKRSYEKRFLPGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILRNLY-KA 156
V R R+ P G P F V G E E S N E + V L+ L +
Sbjct: 755 ADVVDRERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPS 814
Query: 157 WVESKEKLS---IGIVSPYSAQVIAIQEKLGSKYEKIAGFA----VKVKSIDGFQGGEED 209
+ K +LS +G++SPY QV I+ + ++ G +KV S++ FQG E
Sbjct: 815 SKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERS 874
Query: 210 IIIISTVRSNNTG-------SIGFASTPQRINVALTRARHCLWILGSERTLNHSESVWES 262
+I+ISTVRS+ + ++GF P+R NVA+TRA+ L I+G+ L H W+
Sbjct: 875 VILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPD-WKV 933
Query: 263 LLDDAK 268
L+ K
Sbjct: 934 FLEFCK 939
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 134/301 (44%), Gaps = 47/301 (15%)
Query: 6 FVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY 65
F ++DEA+Q+ + PL + +LVGD QLP +V + + SLF+RL
Sbjct: 758 FCIVDEASQISQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQ 815
Query: 66 LGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDA------PTVRKRSYEKRFLPGPMYGP 119
L++QYRM+ I N YE K+ + R ++ L Y
Sbjct: 816 NKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYAD 875
Query: 120 YS----------------FINV--FGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESK 161
YS F+N E+ + N+ E +++ + KA
Sbjct: 876 YSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPS 935
Query: 162 EKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNT 221
+ IGI++PY Q+ I + L V+V ++D +QG ++ I+++S VRSN
Sbjct: 936 D---IGIIAPYRQQLKIINDLLARSIG-----MVEVNTVDKYQGRDKSIVLVSFVRSNKD 987
Query: 222 GSIG-FASTPQRINVALTRARHCLWILGS----------ERTLNHSESVWESLLDDAKAR 270
G++G +R+NVA+TRA+H L +LG E+ LNH S E L+ D +R
Sbjct: 988 GTVGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNS--EKLIIDLPSR 1045
Query: 271 Q 271
+
Sbjct: 1046 E 1046
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 40/306 (13%)
Query: 1 MEQLKFVVIDEAAQLKESESAIPLQL---------PCIQHAILVGDEVQLPAMVESSVSG 51
++ + IDEA E ES + + P Q +L GD QL ++ S ++
Sbjct: 637 IDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQ-LVLAGDPRQLGPVLRSPLAL 695
Query: 52 EAYFGRSLFERLS-----YLGHPKHL-------LSMQYRMHPSISFFPNSYFYENKIRDA 99
+ G SL ERL Y P L YR HP+I PN +Y+ +++
Sbjct: 696 KHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQAC 755
Query: 100 PTVRKRSYEKRFLPGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILRNLY-KA 156
V R R+ P G P F V G E E S N E + V L+ L +
Sbjct: 756 ADVVDRERFCRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPS 815
Query: 157 WVESKEKLS---IGIVSPYSAQVIAIQEKLGSKYEKIAGFA----VKVKSIDGFQGGEED 209
+ K +LS +G++SPY QV I+ + ++ G +KV S++ FQG E
Sbjct: 816 SKKGKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERS 875
Query: 210 IIIISTVRSNNTG-------SIGFASTPQRINVALTRARHCLWILGSERTLNHSESVWES 262
+I+ISTVRS+ + ++GF P+R NVA+TRA+ L ++G+ L H W++
Sbjct: 876 VILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPD-WKT 934
Query: 263 LLDDAK 268
L+ K
Sbjct: 935 FLEFCK 940
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 134/294 (45%), Gaps = 33/294 (11%)
Query: 6 FVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY 65
F ++DEA+Q+ + PL + +LVGD QLP +V + + SLF+RL
Sbjct: 758 FCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMSESLFKRLER 815
Query: 66 LGHPKHLLSMQYRMHPSISFFPNSYFYENKIR--------------DAPTVRKRSY---- 107
L++QYRM+ I N YE K+ + VR Y
Sbjct: 816 NESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADYS 875
Query: 108 EKRFLPGPMY--GPYSFINV--FGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEK 163
+ +L G P F+N E+ N+ E +++ + KA +
Sbjct: 876 DNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPSD- 934
Query: 164 LSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGS 223
IGI++PY Q+ I + L + + V+V ++D +QG ++ +I++S VRSN G+
Sbjct: 935 --IGIIAPYRQQLRTITDLLA----RSSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGT 988
Query: 224 IG-FASTPQRINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNI 276
+G +R+NVA+TRA+H L +LGS +L + E L D A Q N+
Sbjct: 989 LGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPL-EKLFDHLNAEQLISNL 1041
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 136/303 (44%), Gaps = 50/303 (16%)
Query: 7 VVIDEAAQLKESESAI----------PLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFG 56
V IDE E ES + P P +L GD QL + S ++ + G
Sbjct: 635 VFIDECGHAVEPESVVAIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLG 694
Query: 57 RSLFERL---------SYLGH-PKHLLSM--QYRMHPSISFFPNSYFYENKIR----DAP 100
SL ERL S G+ P+ + + YR H +I PN FY+++++ P
Sbjct: 695 TSLLERLMLHNALYAKSDEGYNPQFVTKLLWNYRSHKAILKVPNELFYDSELKAYEGSEP 754
Query: 101 TVRKRSYEKRFLPGPMYGPYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILRNLYKAW-- 157
VR LP P F V G E E S N E+ VV++ L+ L ++
Sbjct: 755 DVRNFYCTWEELPN-RGVPIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGR 813
Query: 158 -----VESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFA----VKVKSIDGFQGGEE 208
+ KE IGI+SPY QV I+ + SK + +KV S++ FQG E
Sbjct: 814 RGCPTISPKE---IGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQER 870
Query: 209 DIIIISTVRS-------NNTGSIGFASTPQRINVALTRARHCLWILGSERTLNHSESVWE 261
+I+ISTVRS + T +GF P+R+NVALTRA+ L ++G+ L+ + W
Sbjct: 871 RVILISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLS-KDPHWH 929
Query: 262 SLL 264
L
Sbjct: 930 RFL 932
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 128/274 (46%), Gaps = 34/274 (12%)
Query: 6 FVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY 65
F ++DEA+Q+ + PL + +LVGD QLP +V + + SLF+RL
Sbjct: 758 FCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQ 815
Query: 66 LGHPKHLLSMQYRMHPSISFFPNSYFYENKIR-----------DAPTVRKRSYEKRFLP- 113
+ L++QYRM+ I N YE K+ + P + E F
Sbjct: 816 NKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYAD 875
Query: 114 ---GPMY-------GPYSFINV--FGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESK 161
P P F+N E+ + N++E +V+ + KA +
Sbjct: 876 YSENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPS 935
Query: 162 EKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNT 221
+ IGI++PY Q+ I + L + G V+V ++D +QG ++ I+++S VRSN
Sbjct: 936 D---IGIIAPYRQQLKVISDLLA---QSSVGM-VEVNTVDRYQGRDKSIVVVSFVRSNED 988
Query: 222 GSIG-FASTPQRINVALTRARHCLWILGSERTLN 254
G++G +R+NVA+TRA+H L +LG +L+
Sbjct: 989 GTLGELLKDWRRLNVAITRAKHKLILLGCVPSLS 1022
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 40/306 (13%)
Query: 1 MEQLKFVVIDEAAQLKESESAIPLQ-LPCIQHA-------ILVGDEVQLPAMVESSVSGE 52
++ + IDEA E ES + + L ++ A +L GD QL ++ ++ +
Sbjct: 636 IDHFTHIFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQK 695
Query: 53 AYFGRSLFERLSYLG----------HPKHLLSM--QYRMHPSISFFPNSYFYENKIRDAP 100
G SL ERL +P+ + + YR HP+I PN +Y+ +++
Sbjct: 696 HGLGYSLLERLLTFNALYKKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQACA 755
Query: 101 TV--RKRSYEKRFLPGPMYGPYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILRNLY-KA 156
V R+R LP + P F V G E E S N E + V L+ L +
Sbjct: 756 DVVDRERFCRWEGLPRQDF-PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPS 814
Query: 157 WVESKEKLS---IGIVSPYSAQVIAIQEKLGSKYEKIAGFA----VKVKSIDGFQGGEED 209
+ K +LS +G++SPY QV I+ + +++ G +KV S++ FQG E
Sbjct: 815 SKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERS 874
Query: 210 IIIISTVRSNNTG-------SIGFASTPQRINVALTRARHCLWILGSERTLNHSESVWES 262
+I+ISTVRS+ + ++GF P+R NVA+TRA+ L ++G+ L H W+
Sbjct: 875 VILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPD-WKV 933
Query: 263 LLDDAK 268
L+ K
Sbjct: 934 FLEFCK 939
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 133/291 (45%), Gaps = 34/291 (11%)
Query: 7 VVIDEAAQLKESESAIP---LQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERL 63
+ +DEA E E I L +L GD QL ++ S + + G SL ERL
Sbjct: 669 IFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLERL 728
Query: 64 ------------SYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRD-APTVRKRSYEK- 109
+ L YR HPSI PN FY+N+++ A + R Y
Sbjct: 729 MTQNELYQKGDTGFDNRYVTKLLQNYRSHPSILKVPNELFYDNELKACADEISSRQYCTW 788
Query: 110 RFLPGPMYGPYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILRNLY----KAWVESKEKL 164
LP + P F V G E E S N E+ +M L+ L K +
Sbjct: 789 EHLPKRGF-PVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKISPK 847
Query: 165 SIGIVSPYSAQVIAIQE--KLGSKYEKIAGFA-VKVKSIDGFQGGEEDIIIISTVRS--- 218
IGI++PY QV I++ K+ + + ++G +KV S++ FQG E +II+STVRS
Sbjct: 848 DIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSKE 907
Query: 219 ----NNTGSIGFASTPQRINVALTRARHCLWILGSERTLNHSESVWESLLD 265
++ +IGF +R NVA+TRA+ L ++G+ L ++ +W ++
Sbjct: 908 HIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNPIIL-RTDEIWGRFMN 957
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 143/326 (43%), Gaps = 53/326 (16%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHA--ILVGDEVQLPAMVESSVSGEAYFGRSLFERL- 63
V+ DEA Q E E+ +P+ + + + +L GD QL ++V S ++ + F S ERL
Sbjct: 945 VLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLL 1004
Query: 64 --------------SYLGHPKHLLSM--QYRMHPSISFFPNSYFYENKIRDAPTV-RKRS 106
S +P L + YR PSI + FY++++ P + K S
Sbjct: 1005 ERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDEL--IPVLSEKDS 1062
Query: 107 YEKRFLPG-----------PMYGPYSFINVFG-GREEFIEHSCRNMVEVSVVMKILRNLY 154
E R L P F + G R+ S N EV V + LY
Sbjct: 1063 RESRLLSKLRCVFESEKDIPQAHGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALY 1122
Query: 155 KAWVESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIIS 214
+A V + + IGI++PY QV + L S + K+ S++ FQG E DII+IS
Sbjct: 1123 RANVTADQ---IGIITPYQKQV----KMLRSMFIGTDVVMPKIGSVEEFQGQERDIILIS 1175
Query: 215 TVRSNN-------TGSIGFASTPQRINVALTRARHCLWILGSERTLNHSESVWESLLDDA 267
TVRS+ S+GF +R+NVA++RAR + I G+ L E W L+
Sbjct: 1176 TVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDE-CWRQLILFC 1234
Query: 268 KARQCFFNIDEDKDLAKAILEVKKEL 293
+F DL + ++ K E+
Sbjct: 1235 VKNNAYFGC----DLPQMVINQKDEV 1256
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 35/296 (11%)
Query: 6 FVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY 65
F ++DEA+Q+ + PL + +LVGD QLP +V + + SLF+RL
Sbjct: 759 FCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVVNREARALGMSESLFKRLER 816
Query: 66 LGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDA-----------PTVRKRSY------- 107
L++QYRM+ I N Y K+ P ++
Sbjct: 817 NESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYAD 876
Query: 108 --EKRFLPGPMY--GPYSFINV--FGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESK 161
+ +L G + P F+N E+ N+ E +++ + KA
Sbjct: 877 YSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPS 936
Query: 162 EKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNT 221
+ IG+++PY Q+ I + L + + V+V ++D +QG ++ +I++S VRSN
Sbjct: 937 D---IGVIAPYRQQLRIISDLLA----RSSVGMVEVNTVDKYQGRDKSLILVSFVRSNED 989
Query: 222 GSIG-FASTPQRINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNI 276
G++G +R+NVALTRA+H L +LGS +L + +L D A Q ++
Sbjct: 990 GTLGELLKDWRRLNVALTRAKHKLILLGSVSSLKRFPPLG-TLFDHLNAEQLILDL 1044
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 42/293 (14%)
Query: 9 IDEAAQLKESESAIPLQLPCIQHA-----ILVGDEVQLPAMVESSVSGEAYFGRSLFERL 63
+DEA ESE+ I + + +A +L GD QL ++ S ++ SL ERL
Sbjct: 676 VDEAGHAVESETII--SVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERL 733
Query: 64 ------------SYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRD-APTVRKRSYEK- 109
+ L M YR HP I PN FY+ +++ A + Y
Sbjct: 734 MTQNDLYKRGDVEFDNRYVSKLIMNYRSHPYILEVPNRLFYDGELKACADEISSNQYCMW 793
Query: 110 RFLPGPMYGPYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLS--- 165
LP + P F V G E E S N+ E+++++ L+ L + K+ +S
Sbjct: 794 EHLPSKGF-PVIFHGVPGKDERESNSPSFFNIYEINILVDYLKKLL--LTQPKKGISRIF 850
Query: 166 ---IGIVSPYSAQVIAIQEKLGSK--YEKIAGF-AVKVKSIDGFQGGEEDIIIISTVRS- 218
IGI++PY QV I+ + + ++ G +KV S++ FQG E +I++STVRS
Sbjct: 851 PKDIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSS 910
Query: 219 ------NNTGSIGFASTPQRINVALTRARHCLWILGSERTLNHSESVWESLLD 265
+ T +IGF +R NVA+TRA+ L ++G+ L ES W +D
Sbjct: 911 VKYISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMILRTDES-WGRFID 962
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 24/268 (8%)
Query: 7 VVIDEAAQLKESESAIPLQLPCIQHAI--LVGDEVQLPAMVESSVSGEAY---FGRSLFE 61
V IDEA+QL +E + L +A L+GD QLP E + G+ G ++
Sbjct: 1206 VQIDEASQL--AECTLLGLLKSFNNASFGLIGDIHQLPPYCEEGLEGKLKDFGIGNTMER 1263
Query: 62 RLSYLGHPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRS--YEKR--FLPGPMY 117
+ P L YR HP + + FY+ + + RS KR F P P +
Sbjct: 1264 AIKEKMFPVCTLRNVYRCHPKTTELLSELFYDGALVSGVSELARSDFMTKRDDFWPNPKF 1323
Query: 118 GPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVI 177
P F+N G + + S N E S+V +I++NL IG++S YSAQ
Sbjct: 1324 -PMMFVNNTGASTK-MGTSTSNSSEKSIVGEIVQNLINDPRNPVNPSDIGVISFYSAQTS 1381
Query: 178 AIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237
+ E L G VK ++D FQG E++III+ S N F R+NVA+
Sbjct: 1382 ILTEHL-------RGSGVKCGTVDAFQGSEKEIIIMC---STNERISDFMQLSNRLNVAM 1431
Query: 238 TRARHCLWILGSERTLNHSESVWESLLD 265
+RA+ I+G L + + W ++++
Sbjct: 1432 SRAKQVTIIIGHLDGLRRA-NYWSTIVN 1458
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 116/275 (42%), Gaps = 33/275 (12%)
Query: 7 VVIDEAAQLKESESAIPLQL--PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERL- 63
V +DEA Q E E IPL L +L GD +QL +++S ++ S ERL
Sbjct: 883 VFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLM 942
Query: 64 ------------SYLGHPKHLLSMQ----YRMHPSISFFPNSYFYENKIRDA--PTVRKR 105
G LL + YR H ++ P+ FY ++ PTV
Sbjct: 943 SRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTS 1002
Query: 106 SYEKRFLPGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVVMKILRNLYKAWVESKEKL 164
LP + P F V G E S N E V++ L +
Sbjct: 1003 LLGWEKLPKKGF-PLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSAS 1061
Query: 165 SIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSN----- 219
IG+++PY QV EK+ + +KV S++ FQG E +IIISTVRSN
Sbjct: 1062 DIGVITPYRKQV----EKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFE 1117
Query: 220 -NTGSIGFASTPQRINVALTRARHCLWILGSERTL 253
+ +GF S +R NVA+TR + L +LG+ L
Sbjct: 1118 DDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVL 1152
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 118/277 (42%), Gaps = 37/277 (13%)
Query: 7 VVIDEAAQLKESESAIPLQL--PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLS 64
V +DEA Q E E IPL L +L GD +QL +++S ++ S+ ERL
Sbjct: 885 VFVDEAGQASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERL- 943
Query: 65 YLGHPKHL-------------------LSMQYRMHPSISFFPNSYFYENKIRDA--PTVR 103
+ P +L L YR H ++ P+ FY ++ P V
Sbjct: 944 -MSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSHSALLALPSRLFYHRELEVCADPKVV 1002
Query: 104 KRSYEKRFLPGPMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVVMKILRNLYKAWVESKE 162
LP + P F V G E S + E VM+ L ++
Sbjct: 1003 TSLLGWEKLPRKGF-PLIFHGVRGNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVS 1061
Query: 163 KLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSN--- 219
IG+++PY QV EK+ + +KV S++ FQG E +I+ISTVRSN
Sbjct: 1062 SKDIGVITPYRKQV----EKIKILLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDR 1117
Query: 220 ---NTGSIGFASTPQRINVALTRARHCLWILGSERTL 253
+ +GF S +R NVA+TR + L ILG+ L
Sbjct: 1118 FEDDRYFLGFLSNSKRFNVAITRPKALLIILGNPHVL 1154
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 136/323 (42%), Gaps = 55/323 (17%)
Query: 7 VVIDEAAQLKESESAIPLQLPC-IQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY 65
+++DEAAQ E E+ +PL L +L GD +QL V S + E SL +RL Y
Sbjct: 784 ILLDEAAQAMECETIMPLALAVKSTRVVLAGDHMQLSPFVYSEFARERNLHVSLLDRL-Y 842
Query: 66 LGHPKH-----LLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPY 120
+P LL YR H +I + + FYE K+ + K+ K F P
Sbjct: 843 EHYPSEYPCRILLCENYRSHEAIINYTSDLFYEGKLMAS---GKQPPHKDFYP------- 892
Query: 121 SFINVFGGREEFIEH----SCRNMVEVSVVMKILRNLYKAWVESKEKL---SIGIVSPYS 173
+ F R E ++ + N EV +++ + + K W S KL SIG+VSPY+
Sbjct: 893 --LTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVSWGKLEEGSIGVVSPYA 950
Query: 174 AQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTG----------- 222
QV I+ +L K V V+ + QG + ++ +STVR+ +T
Sbjct: 951 DQVFRIRAELRKKRMS----EVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKE 1006
Query: 223 ----------SIGFASTPQRINVALTRARHCLWILGSERTL---NHSESVWESLLDDAKA 269
GF S + +N A+TRA+ + ++G L WE+ +
Sbjct: 1007 QLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFISICHE 1066
Query: 270 RQCFFNID-EDKDLAKAILEVKK 291
I E + LE+KK
Sbjct: 1067 NHSLHGITFEQIKIQLEALELKK 1089
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 718,142,498
Number of Sequences: 539616
Number of extensions: 30537246
Number of successful extensions: 88162
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 87666
Number of HSP's gapped (non-prelim): 391
length of query: 1987
length of database: 191,569,459
effective HSP length: 133
effective length of query: 1854
effective length of database: 119,800,531
effective search space: 222110184474
effective search space used: 222110184474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)