Query 000162
Match_columns 1987
No_of_seqs 689 out of 3034
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 21:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1802 RNA helicase nonsense 100.0 3.6E-51 7.9E-56 491.9 16.8 270 2-277 567-841 (935)
2 KOG1803 DNA helicase [Replicat 100.0 3.2E-45 6.9E-50 444.4 17.4 265 3-277 358-633 (649)
3 TIGR00376 DNA helicase, putati 100.0 1E-43 2.2E-48 458.7 23.1 264 2-278 360-636 (637)
4 KOG1805 DNA replication helica 100.0 1E-38 2.2E-43 400.2 11.1 258 2-273 795-1076(1100)
5 KOG1801 tRNA-splicing endonucl 100.0 1.2E-36 2.6E-41 401.1 18.0 281 2-282 535-819 (827)
6 KOG1807 Helicases [Replication 100.0 6.4E-37 1.4E-41 374.1 13.6 299 3-324 720-1019(1025)
7 COG1112 Superfamily I DNA and 100.0 2E-34 4.4E-39 383.4 19.4 264 3-277 488-754 (767)
8 PF13087 AAA_12: AAA domain; P 100.0 1.2E-33 2.7E-38 316.6 6.1 196 55-250 1-199 (200)
9 TIGR01448 recD_rel helicase, p 99.9 4.4E-25 9.5E-30 289.8 12.1 102 472-577 284-403 (720)
10 KOG1804 RNA helicase [RNA proc 99.9 3.1E-25 6.7E-30 283.6 8.1 263 2-277 441-724 (775)
11 PRK10875 recD exonuclease V su 99.9 5.2E-22 1.1E-26 255.0 10.3 101 472-578 115-252 (615)
12 KOG3616 Selective LIM binding 99.9 3.5E-20 7.5E-25 224.3 23.5 287 843-1149 662-984 (1636)
13 TIGR01447 recD exodeoxyribonuc 99.8 1.4E-21 3.1E-26 250.8 10.8 70 472-548 111-185 (586)
14 KOG1538 Uncharacterized conser 99.8 1.3E-18 2.7E-23 210.4 19.9 309 808-1166 558-881 (1081)
15 KOG3617 WD40 and TPR repeat-co 99.8 1E-17 2.2E-22 206.3 21.0 258 831-1139 901-1183(1416)
16 KOG1806 DEAD box containing he 99.8 6.9E-20 1.5E-24 230.9 1.8 244 3-255 991-1248(1320)
17 KOG3616 Selective LIM binding 99.7 4.4E-17 9.5E-22 197.9 21.4 231 841-1078 708-988 (1636)
18 KOG2041 WD40 repeat protein [G 99.7 2.4E-16 5.2E-21 192.0 25.8 282 820-1114 671-976 (1189)
19 COG0507 RecD ATP-dependent exo 99.7 2.1E-17 4.4E-22 219.0 7.8 276 472-803 277-668 (696)
20 PRK11054 helD DNA helicase IV; 99.7 2.1E-16 4.5E-21 206.6 15.5 160 617-805 494-662 (684)
21 TIGR02768 TraA_Ti Ti-type conj 99.7 1.4E-16 3E-21 210.9 12.3 93 472-573 317-427 (744)
22 PRK13889 conjugal transfer rel 99.6 6.5E-16 1.4E-20 206.2 8.1 97 472-573 307-421 (988)
23 PRK10919 ATP-dependent DNA hel 99.6 8.8E-15 1.9E-19 192.6 14.0 60 719-804 552-611 (672)
24 PRK13826 Dtr system oriT relax 99.6 1.4E-14 3E-19 194.3 14.3 95 472-575 346-459 (1102)
25 TIGR01073 pcrA ATP-dependent D 99.6 2.2E-14 4.8E-19 191.1 16.3 35 513-547 4-39 (726)
26 TIGR02760 TraI_TIGR conjugativ 99.5 1E-13 2.2E-18 197.6 22.4 71 3-83 529-601 (1960)
27 PRK11773 uvrD DNA-dependent he 99.5 3.8E-14 8.1E-19 188.5 14.4 59 720-804 555-614 (721)
28 TIGR01075 uvrD DNA helicase II 99.5 4.5E-14 9.8E-19 187.8 14.5 35 513-547 4-39 (715)
29 COG3973 Superfamily I DNA and 99.4 1.2E-13 2.6E-18 169.7 9.0 140 617-805 590-745 (747)
30 TIGR01447 recD exodeoxyribonuc 99.4 1.2E-12 2.6E-17 169.1 14.5 55 195-254 521-575 (586)
31 TIGR01074 rep ATP-dependent DN 99.4 1.1E-12 2.4E-17 173.6 14.5 58 720-803 553-610 (664)
32 TIGR01448 recD_rel helicase, p 99.4 1.2E-12 2.6E-17 173.2 13.8 76 3-88 416-495 (720)
33 PRK10875 recD exonuclease V su 99.3 3.8E-12 8.3E-17 164.8 12.5 55 195-254 539-593 (615)
34 KOG1538 Uncharacterized conser 99.3 6.1E-11 1.3E-15 145.0 18.2 214 838-1095 629-859 (1081)
35 PRK11054 helD DNA helicase IV; 99.3 1.9E-11 4.2E-16 160.5 12.4 211 2-250 429-663 (684)
36 KOG3617 WD40 and TPR repeat-co 99.2 1.4E-09 3.1E-14 136.0 24.1 265 810-1079 712-1006(1416)
37 TIGR02768 TraA_Ti Ti-type conj 99.2 8E-11 1.7E-15 156.7 13.6 69 2-81 438-508 (744)
38 COG0210 UvrD Superfamily I DNA 99.1 2E-10 4.3E-15 152.1 10.5 62 719-806 555-618 (655)
39 PRK13826 Dtr system oriT relax 99.0 1.2E-09 2.5E-14 147.8 12.6 70 2-82 467-538 (1102)
40 PRK13889 conjugal transfer rel 98.9 2.2E-09 4.7E-14 144.7 10.8 70 2-82 432-503 (988)
41 PF01443 Viral_helicase1: Vira 98.9 4.1E-09 8.9E-14 121.5 11.0 80 3-90 62-141 (234)
42 PRK13709 conjugal transfer nic 98.9 8.6E-10 1.9E-14 154.4 4.2 92 472-575 936-1048(1747)
43 PRK13909 putative recombinatio 98.9 6.3E-09 1.4E-13 142.1 11.1 155 2-184 327-492 (910)
44 TIGR00376 DNA helicase, putati 98.8 1.5E-08 3.2E-13 133.2 12.2 79 697-807 529-610 (637)
45 KOG1586 Protein required for f 98.8 1.1E-07 2.3E-12 107.4 16.1 173 843-1044 34-225 (288)
46 TIGR00609 recB exodeoxyribonuc 98.8 2.3E-08 4.9E-13 138.8 13.1 173 2-184 295-490 (1087)
47 COG1074 RecB ATP-dependent exo 98.8 1.1E-08 2.4E-13 142.0 9.9 177 2-185 377-576 (1139)
48 PRK14712 conjugal transfer nic 98.7 5.6E-09 1.2E-13 144.7 4.4 94 472-575 804-916 (1623)
49 TIGR02784 addA_alphas double-s 98.7 7.6E-08 1.7E-12 134.8 15.0 85 2-93 390-496 (1141)
50 PF14938 SNAP: Soluble NSF att 98.7 2.8E-07 6.1E-12 110.4 17.6 177 846-1044 39-226 (282)
51 PF13538 UvrD_C_2: UvrD-like h 98.7 2.3E-09 5.1E-14 108.6 -0.1 50 718-803 55-104 (104)
52 PRK10876 recB exonuclease V su 98.7 4.5E-08 9.8E-13 136.2 12.3 172 2-183 376-571 (1181)
53 TIGR01073 pcrA ATP-dependent D 98.7 8.2E-08 1.8E-12 128.9 13.9 85 2-93 208-295 (726)
54 PRK11773 uvrD DNA-dependent he 98.6 1.8E-07 4E-12 125.3 13.8 85 2-93 212-299 (721)
55 TIGR02785 addA_Gpos recombinat 98.6 1.4E-07 3E-12 132.5 13.0 85 2-93 387-482 (1232)
56 PF13361 UvrD_C: UvrD-like hel 98.6 5.3E-09 1.2E-13 126.2 -1.1 99 71-186 1-100 (351)
57 TIGR01075 uvrD DNA helicase II 98.6 2E-07 4.3E-12 125.0 12.0 85 2-93 207-294 (715)
58 KOG2041 WD40 repeat protein [G 98.6 3.3E-06 7.2E-11 105.3 20.7 148 846-993 738-905 (1189)
59 COG0507 RecD ATP-dependent exo 98.5 1.9E-08 4E-13 134.4 -0.0 55 195-255 622-676 (696)
60 KOG1920 IkappaB kinase complex 98.5 3.4E-06 7.4E-11 111.5 19.8 173 855-1027 893-1087(1265)
61 PRK13909 putative recombinatio 98.4 1.8E-07 4E-12 128.0 4.2 88 719-808 608-704 (910)
62 TIGR02785 addA_Gpos recombinat 98.4 8.2E-08 1.8E-12 134.7 0.2 91 717-807 781-880 (1232)
63 KOG1803 DNA helicase [Replicat 98.4 5.5E-07 1.2E-11 112.9 7.3 35 508-542 180-218 (649)
64 PRK13709 conjugal transfer nic 98.3 2.6E-06 5.7E-11 120.5 13.5 72 3-84 1062-1136(1747)
65 KOG1920 IkappaB kinase complex 98.3 3.5E-05 7.7E-10 102.3 22.5 161 894-1081 889-1054(1265)
66 COG1074 RecB ATP-dependent exo 98.3 2.3E-07 5E-12 129.2 2.2 88 717-807 742-837 (1139)
67 TIGR02784 addA_alphas double-s 98.3 2.1E-07 4.5E-12 130.5 1.4 91 717-807 774-875 (1141)
68 PF14938 SNAP: Soluble NSF att 98.3 1.2E-05 2.6E-10 96.5 15.4 54 1055-1108 157-225 (282)
69 PRK14712 conjugal transfer nic 98.2 3.1E-06 6.8E-11 118.3 11.4 76 3-88 930-1008(1623)
70 TIGR00609 recB exodeoxyribonuc 98.2 4.7E-07 1E-11 125.9 1.6 83 717-804 651-735 (1087)
71 TIGR02917 PEP_TPR_lipo putativ 98.1 0.00084 1.8E-08 90.5 31.0 79 1021-1105 710-796 (899)
72 KOG1805 DNA replication helica 98.1 5.3E-06 1.1E-10 108.2 9.0 92 697-819 975-1069(1100)
73 PRK10876 recB exonuclease V su 98.1 7.3E-07 1.6E-11 124.5 0.8 78 717-802 734-815 (1181)
74 COG3973 Superfamily I DNA and 98.1 3.4E-06 7.4E-11 105.6 5.9 206 3-249 528-745 (747)
75 TIGR00990 3a0801s09 mitochondr 98.1 0.00059 1.3E-08 90.6 26.8 30 839-868 157-186 (615)
76 TIGR02917 PEP_TPR_lipo putativ 98.0 0.00089 1.9E-08 90.2 27.8 176 839-1039 598-795 (899)
77 PLN03081 pentatricopeptide (PP 98.0 0.0004 8.7E-09 93.5 23.1 236 840-1104 288-553 (697)
78 TIGR02760 TraI_TIGR conjugativ 97.9 1.2E-05 2.7E-10 116.7 8.3 75 3-87 1112-1191(1960)
79 PF13604 AAA_30: AAA domain; P 97.9 5.7E-06 1.2E-10 94.2 3.9 76 2-87 92-170 (196)
80 PRK11788 tetratricopeptide rep 97.9 0.0028 6.1E-08 78.6 26.2 146 942-1105 143-308 (389)
81 PF13604 AAA_30: AAA domain; P 97.9 1E-05 2.3E-10 92.1 4.2 61 513-576 1-80 (196)
82 PLN03081 pentatricopeptide (PP 97.8 0.0011 2.3E-08 89.4 23.3 165 916-1102 264-449 (697)
83 KOG1840 Kinesin light chain [C 97.8 0.0021 4.5E-08 82.7 24.3 225 846-1102 203-473 (508)
84 PF09848 DUF2075: Uncharacteri 97.8 2.6E-05 5.6E-10 96.5 5.9 85 2-95 82-183 (352)
85 KOG1802 RNA helicase nonsense 97.8 7.5E-05 1.6E-09 94.1 9.7 87 697-819 728-826 (935)
86 PLN03218 maturation of RBCL 1; 97.8 0.0056 1.2E-07 85.5 28.8 19 1549-1567 1004-1022(1060)
87 PLN03218 maturation of RBCL 1; 97.7 0.0019 4.1E-08 90.0 23.1 239 840-1104 505-779 (1060)
88 PLN03077 Protein ECB2; Provisi 97.7 0.01 2.2E-07 82.0 30.1 110 1022-1141 532-651 (857)
89 PLN03077 Protein ECB2; Provisi 97.7 0.0049 1.1E-07 85.1 26.5 45 948-992 532-580 (857)
90 PF13429 TPR_15: Tetratricopep 97.6 0.00023 4.9E-09 85.0 10.7 210 839-1078 41-273 (280)
91 PRK11447 cellulose synthase su 97.6 0.011 2.4E-07 84.3 29.0 242 840-1103 383-661 (1157)
92 KOG0985 Vesicle coat protein c 97.6 0.0021 4.6E-08 84.1 19.2 181 898-1079 1061-1305(1666)
93 TIGR00990 3a0801s09 mitochondr 97.6 0.006 1.3E-07 81.2 24.1 183 901-1103 402-592 (615)
94 PRK11447 cellulose synthase su 97.6 0.012 2.5E-07 84.0 28.3 31 840-870 301-331 (1157)
95 PRK11788 tetratricopeptide rep 97.6 0.013 2.9E-07 72.6 25.5 214 841-1079 68-308 (389)
96 PF13538 UvrD_C_2: UvrD-like h 97.5 1.4E-05 3.1E-10 81.0 -0.8 50 194-247 55-104 (104)
97 PF13087 AAA_12: AAA domain; P 97.5 3.1E-05 6.7E-10 87.5 1.7 77 697-805 114-198 (200)
98 KOG1585 Protein required for f 97.5 0.00087 1.9E-08 77.0 13.1 154 899-1089 25-186 (308)
99 KOG4626 O-linked N-acetylgluco 97.5 0.0032 7E-08 79.4 18.8 225 841-1105 149-414 (966)
100 PF13086 AAA_11: AAA domain; P 97.5 6.5E-05 1.4E-09 85.8 3.9 30 513-542 1-34 (236)
101 PF00580 UvrD-helicase: UvrD/R 97.5 7E-05 1.5E-09 89.8 4.2 34 514-547 1-35 (315)
102 KOG4626 O-linked N-acetylgluco 97.5 0.0052 1.1E-07 77.6 20.0 267 848-1137 190-526 (966)
103 KOG2076 RNA polymerase III tra 97.4 0.0064 1.4E-07 80.2 20.4 237 839-1105 204-475 (895)
104 PF13245 AAA_19: Part of AAA d 97.4 0.00014 3.1E-09 70.8 3.9 19 524-542 9-27 (76)
105 KOG1804 RNA helicase [RNA proc 97.4 4.4E-05 9.5E-10 100.5 -0.1 260 3-276 265-546 (775)
106 KOG2247 WD40 repeat-containing 97.3 5.5E-05 1.2E-09 92.9 0.1 236 843-1085 4-323 (615)
107 PRK15174 Vi polysaccharide exp 97.3 0.033 7.1E-07 74.9 26.1 166 921-1105 187-378 (656)
108 PF04053 Coatomer_WDAD: Coatom 97.3 0.011 2.4E-07 75.5 20.2 153 835-992 288-441 (443)
109 KOG1586 Protein required for f 97.3 0.0037 8E-08 71.7 14.0 73 900-987 29-114 (288)
110 KOG1840 Kinesin light chain [C 97.2 0.033 7.1E-07 72.0 23.5 166 900-1079 201-393 (508)
111 PF04053 Coatomer_WDAD: Coatom 97.2 0.0072 1.6E-07 77.1 17.4 137 899-1080 296-442 (443)
112 PRK10919 ATP-dependent DNA hel 97.1 0.0015 3.3E-08 87.5 10.7 156 2-185 206-364 (672)
113 KOG0985 Vesicle coat protein c 97.1 0.15 3.3E-06 67.8 27.4 128 839-966 1101-1305(1666)
114 PF13429 TPR_15: Tetratricopep 97.0 0.0032 7E-08 75.2 11.1 25 843-867 9-33 (280)
115 PF01443 Viral_helicase1: Vira 97.0 0.00027 5.8E-09 81.8 1.5 50 720-803 184-233 (234)
116 KOG1585 Protein required for f 96.9 0.036 7.9E-07 64.3 17.8 26 896-921 29-54 (308)
117 PRK10049 pgaA outer membrane p 96.9 0.28 6E-06 67.4 29.9 198 1020-1237 278-514 (765)
118 COG5290 IkappaB kinase complex 96.9 0.072 1.6E-06 69.1 21.2 207 896-1135 875-1087(1243)
119 TIGR01074 rep ATP-dependent DN 96.8 0.0033 7.1E-08 84.4 10.1 157 2-186 205-364 (664)
120 TIGR02521 type_IV_pilW type IV 96.8 0.08 1.7E-06 59.2 19.4 96 841-966 30-125 (234)
121 COG3972 Superfamily I DNA and 96.8 0.0011 2.3E-08 82.3 4.1 37 512-548 161-199 (660)
122 PRK10747 putative protoheme IX 96.8 0.21 4.6E-06 63.3 24.7 116 847-966 89-213 (398)
123 PRK15174 Vi polysaccharide exp 96.7 0.19 4.1E-06 67.8 25.4 240 839-1102 73-341 (656)
124 COG2956 Predicted N-acetylgluc 96.7 0.07 1.5E-06 64.2 18.5 147 943-1106 110-276 (389)
125 KOG2114 Vacuolar assembly/sort 96.7 0.031 6.7E-07 73.4 17.0 163 918-1101 341-512 (933)
126 PF05970 PIF1: PIF1-like helic 96.7 0.0011 2.4E-08 82.6 4.0 62 513-577 1-80 (364)
127 KOG1155 Anaphase-promoting com 96.7 0.04 8.7E-07 68.5 16.9 138 840-991 362-532 (559)
128 KOG1126 DNA-binding cell divis 96.5 0.039 8.5E-07 71.3 15.1 147 839-997 418-588 (638)
129 COG5290 IkappaB kinase complex 96.4 0.1 2.2E-06 67.7 18.0 186 899-1091 936-1132(1243)
130 PF13361 UvrD_C: UvrD-like hel 96.4 0.00056 1.2E-08 82.9 -1.8 58 193-250 286-350 (351)
131 PRK10747 putative protoheme IX 96.3 0.79 1.7E-05 58.2 25.6 87 841-936 116-212 (398)
132 KOG2076 RNA polymerase III tra 96.2 0.3 6.4E-06 65.3 21.6 125 840-994 171-308 (895)
133 KOG0276 Vesicle coat complex C 96.2 0.025 5.3E-07 71.9 11.3 160 830-994 602-762 (794)
134 KOG2003 TPR repeat-containing 96.2 0.075 1.6E-06 65.2 14.5 28 841-868 489-516 (840)
135 PRK10049 pgaA outer membrane p 96.1 0.57 1.2E-05 64.4 24.6 176 922-1102 248-450 (765)
136 PRK09782 bacteriophage N4 rece 96.0 0.35 7.5E-06 67.8 22.2 136 946-1100 582-732 (987)
137 KOG0276 Vesicle coat complex C 95.9 0.097 2.1E-06 66.8 14.2 123 913-1080 639-761 (794)
138 TIGR02521 type_IV_pilW type IV 95.9 0.35 7.6E-06 54.0 17.6 127 840-994 63-197 (234)
139 KOG2108 3'-5' DNA helicase [Re 95.8 0.0038 8.2E-08 82.2 1.8 68 721-808 677-745 (853)
140 TIGR00540 hemY_coli hemY prote 95.7 1.6 3.5E-05 55.6 24.8 119 846-966 88-213 (409)
141 PRK12370 invasion protein regu 95.6 1.2 2.6E-05 59.1 23.9 186 905-1120 345-547 (553)
142 COG3972 Superfamily I DNA and 95.6 0.012 2.7E-07 73.3 5.0 236 2-250 294-576 (660)
143 KOG1126 DNA-binding cell divis 95.6 0.078 1.7E-06 68.6 12.2 230 841-1101 352-613 (638)
144 KOG2047 mRNA splicing factor [ 95.6 2.3 4.9E-05 55.5 24.3 51 941-991 388-450 (835)
145 KOG0547 Translocase of outer m 95.4 3.4 7.3E-05 52.6 24.7 69 1064-1137 439-532 (606)
146 KOG2002 TPR-containing nuclear 95.4 0.51 1.1E-05 63.6 18.6 151 839-990 561-740 (1018)
147 COG2956 Predicted N-acetylgluc 95.3 3.6 7.9E-05 50.2 23.5 176 843-1039 70-274 (389)
148 TIGR03302 OM_YfiO outer membra 95.3 1.8 4E-05 50.2 21.3 64 839-921 30-93 (235)
149 PRK09782 bacteriophage N4 rece 95.2 2 4.4E-05 60.5 24.8 212 841-1078 506-736 (987)
150 PF05970 PIF1: PIF1-like helic 95.2 0.0071 1.5E-07 75.6 1.2 74 2-81 101-192 (364)
151 KOG1155 Anaphase-promoting com 95.2 0.35 7.7E-06 60.6 15.2 139 842-992 330-492 (559)
152 PF12569 NARP1: NMDA receptor- 95.1 0.59 1.3E-05 61.2 17.9 99 1021-1129 235-333 (517)
153 KOG2003 TPR repeat-containing 95.0 1.5 3.3E-05 54.4 19.7 67 922-988 535-614 (840)
154 COG0210 UvrD Superfamily I DNA 94.9 0.087 1.9E-06 70.9 10.3 157 2-185 212-371 (655)
155 PRK11189 lipoprotein NlpI; Pro 94.9 1.7 3.8E-05 52.9 20.4 119 842-990 64-189 (296)
156 PF04840 Vps16_C: Vps16, C-ter 94.9 1.2 2.7E-05 55.0 19.1 82 1023-1105 186-288 (319)
157 smart00299 CLH Clathrin heavy 94.5 1.3 2.9E-05 47.5 16.3 120 968-1102 9-132 (140)
158 PRK15359 type III secretion sy 94.5 0.28 6E-06 53.5 11.0 98 839-966 21-118 (144)
159 smart00487 DEXDc DEAD-like hel 94.4 0.043 9.3E-07 60.3 4.7 38 510-547 5-46 (201)
160 smart00382 AAA ATPases associa 94.4 0.024 5.2E-07 58.4 2.5 17 526-542 3-19 (148)
161 PF03266 NTPase_1: NTPase; In 94.3 0.032 6.9E-07 62.5 3.2 22 528-549 2-25 (168)
162 cd00009 AAA The AAA+ (ATPases 94.2 0.041 8.9E-07 57.4 3.9 18 525-542 19-36 (151)
163 KOG1156 N-terminal acetyltrans 94.0 6.7 0.00014 51.6 23.0 31 840-870 73-103 (700)
164 PF13238 AAA_18: AAA domain; P 94.0 0.04 8.6E-07 57.4 3.1 15 528-542 1-15 (129)
165 PF00004 AAA: ATPase family as 93.9 0.039 8.5E-07 57.6 2.9 20 528-547 1-22 (132)
166 PF12569 NARP1: NMDA receptor- 93.9 0.91 2E-05 59.5 15.7 151 900-1064 196-363 (517)
167 PRK14720 transcript cleavage f 93.7 1.3 2.8E-05 61.0 17.2 114 918-1039 123-248 (906)
168 KOG2034 Vacuolar sorting prote 93.6 1.5 3.2E-05 59.1 16.7 68 916-983 363-433 (911)
169 PF13207 AAA_17: AAA domain; P 93.6 0.049 1.1E-06 56.6 3.0 16 527-542 1-16 (121)
170 PRK14574 hmsH outer membrane p 93.6 2.4 5.3E-05 58.6 19.6 248 840-1141 32-312 (822)
171 PF13521 AAA_28: AAA domain; P 93.6 0.033 7.1E-07 61.5 1.7 15 528-542 2-16 (163)
172 TIGR02881 spore_V_K stage V sp 93.5 0.05 1.1E-06 64.9 3.1 18 525-542 42-59 (261)
173 COG1936 Predicted nucleotide k 93.4 0.05 1.1E-06 60.7 2.7 19 527-545 2-21 (180)
174 PF00270 DEAD: DEAD/DEAH box h 93.4 0.075 1.6E-06 58.1 4.1 33 515-547 1-36 (169)
175 PRK11189 lipoprotein NlpI; Pro 93.3 7 0.00015 47.7 21.2 89 899-995 65-161 (296)
176 COG3063 PilF Tfp pilus assembl 93.3 7.2 0.00016 45.9 19.6 118 846-993 39-166 (250)
177 KOG2002 TPR-containing nuclear 93.1 20 0.00043 49.4 25.7 135 1017-1162 273-432 (1018)
178 COG3911 Predicted ATPase [Gene 93.1 0.05 1.1E-06 59.0 2.0 17 526-542 10-26 (183)
179 COG3071 HemY Uncharacterized e 92.9 11 0.00024 47.2 21.5 84 1018-1101 267-383 (400)
180 KOG0991 Replication factor C, 92.9 0.071 1.5E-06 61.6 2.9 18 525-542 48-65 (333)
181 PF04840 Vps16_C: Vps16, C-ter 92.9 28 0.0006 43.4 25.4 57 1035-1092 245-301 (319)
182 PF02562 PhoH: PhoH-like prote 92.8 0.085 1.8E-06 61.0 3.6 34 514-547 5-41 (205)
183 PRK06851 hypothetical protein; 92.8 0.071 1.5E-06 66.5 3.2 24 525-548 30-55 (367)
184 COG1618 Predicted nucleotide k 92.7 0.08 1.7E-06 58.5 3.0 23 526-548 6-30 (179)
185 PF05729 NACHT: NACHT domain 92.7 0.082 1.8E-06 57.3 3.2 16 527-542 2-17 (166)
186 PRK10536 hypothetical protein; 92.6 0.13 2.8E-06 61.3 4.7 32 512-543 58-92 (262)
187 PF13424 TPR_12: Tetratricopep 92.6 0.5 1.1E-05 45.4 8.0 62 899-966 6-72 (78)
188 cd02019 NK Nucleoside/nucleoti 92.6 0.1 2.2E-06 49.8 3.1 21 527-547 1-23 (69)
189 KOG3347 Predicted nucleotide k 92.5 0.086 1.9E-06 57.4 2.9 18 525-542 7-24 (176)
190 PLN03088 SGT1, suppressor of 92.5 0.7 1.5E-05 57.9 11.2 93 843-965 3-95 (356)
191 PF13191 AAA_16: AAA ATPase do 92.3 0.11 2.4E-06 57.6 3.7 18 525-542 24-41 (185)
192 TIGR00540 hemY_coli hemY prote 92.3 12 0.00026 47.9 22.1 25 845-869 121-145 (409)
193 PRK01184 hypothetical protein; 92.3 0.087 1.9E-06 59.3 2.8 16 527-542 3-18 (184)
194 PF07728 AAA_5: AAA domain (dy 92.3 0.095 2.1E-06 56.1 2.9 21 527-547 1-23 (139)
195 TIGR02640 gas_vesic_GvpN gas v 92.3 0.13 2.7E-06 61.7 4.2 19 524-542 20-38 (262)
196 PF13401 AAA_22: AAA domain; P 92.2 0.1 2.2E-06 54.8 2.9 23 525-547 4-28 (131)
197 PF13424 TPR_12: Tetratricopep 92.0 0.65 1.4E-05 44.6 8.1 71 844-935 7-77 (78)
198 cd01129 PulE-GspE PulE/GspE Th 92.0 0.12 2.7E-06 61.9 3.8 29 514-542 64-97 (264)
199 TIGR01360 aden_kin_iso1 adenyl 92.0 0.1 2.3E-06 58.3 3.0 17 526-542 4-20 (188)
200 KOG0744 AAA+-type ATPase [Post 92.0 0.076 1.6E-06 63.9 1.8 22 521-542 173-194 (423)
201 TIGR02795 tol_pal_ybgF tol-pal 92.0 1.2 2.7E-05 45.2 10.5 99 842-965 2-101 (119)
202 PRK08233 hypothetical protein; 92.0 0.096 2.1E-06 58.3 2.6 17 526-542 4-20 (182)
203 PF09848 DUF2075: Uncharacteri 91.9 0.096 2.1E-06 65.3 2.8 22 526-547 2-25 (352)
204 PRK13833 conjugal transfer pro 91.9 0.15 3.2E-06 63.0 4.2 23 520-542 139-161 (323)
205 KOG0550 Molecular chaperone (D 91.8 0.88 1.9E-05 56.7 10.5 95 841-936 248-346 (486)
206 TIGR01359 UMP_CMP_kin_fam UMP- 91.8 0.12 2.5E-06 58.0 3.0 16 527-542 1-16 (183)
207 TIGR03015 pepcterm_ATPase puta 91.7 0.15 3.2E-06 60.7 3.8 30 513-542 23-60 (269)
208 COG2256 MGS1 ATPase related to 91.7 0.13 2.8E-06 63.8 3.4 25 518-542 39-65 (436)
209 PF05496 RuvB_N: Holliday junc 91.6 0.12 2.5E-06 60.4 2.8 18 525-542 50-67 (233)
210 PF13525 YfiO: Outer membrane 91.6 10 0.00023 43.7 18.6 31 840-870 3-33 (203)
211 KOG2280 Vacuolar assembly/sort 91.5 16 0.00035 48.9 21.7 85 1023-1107 693-798 (829)
212 PRK04040 adenylate kinase; Pro 91.5 0.13 2.7E-06 58.8 2.9 17 526-542 3-19 (188)
213 KOG0543 FKBP-type peptidyl-pro 91.5 0.83 1.8E-05 57.0 9.9 103 844-966 210-317 (397)
214 PRK06762 hypothetical protein; 91.4 0.13 2.9E-06 56.8 2.9 17 526-542 3-19 (166)
215 PRK06526 transposase; Provisio 91.4 0.21 4.6E-06 59.6 4.8 35 508-542 75-115 (254)
216 PHA00729 NTP-binding motif con 91.3 0.13 2.7E-06 60.4 2.7 16 527-542 19-34 (226)
217 CHL00181 cbbX CbbX; Provisiona 91.2 0.14 3.1E-06 62.2 3.0 16 527-542 61-76 (287)
218 cd02022 DPCK Dephospho-coenzym 91.2 0.14 3.1E-06 57.7 2.8 16 527-542 1-16 (179)
219 TIGR02928 orc1/cdc6 family rep 91.1 0.18 4E-06 62.7 4.1 18 525-542 40-57 (365)
220 TIGR02880 cbbX_cfxQ probable R 91.1 0.14 3.1E-06 62.0 3.0 16 527-542 60-75 (284)
221 PRK10370 formate-dependent nit 91.1 1.6 3.4E-05 50.4 11.3 99 839-966 70-170 (198)
222 KOG2066 Vacuolar assembly/sort 91.0 12 0.00026 50.3 19.8 67 1029-1095 621-690 (846)
223 cd01428 ADK Adenylate kinase ( 90.9 0.15 3.3E-06 57.4 2.8 15 528-542 2-16 (194)
224 PRK13894 conjugal transfer ATP 90.9 0.19 4.2E-06 61.9 3.9 22 521-542 144-165 (319)
225 PF13671 AAA_33: AAA domain; P 90.9 0.13 2.9E-06 54.9 2.2 16 527-542 1-16 (143)
226 COG0237 CoaE Dephospho-CoA kin 90.8 0.15 3.2E-06 58.9 2.6 16 527-542 4-19 (201)
227 cd01130 VirB11-like_ATPase Typ 90.7 0.22 4.7E-06 56.5 3.8 29 514-542 10-42 (186)
228 cd00189 TPR Tetratricopeptide 90.6 1.3 2.7E-05 41.1 8.4 93 844-966 2-94 (100)
229 PRK03839 putative kinase; Prov 90.6 0.18 3.9E-06 56.6 3.0 16 527-542 2-17 (180)
230 TIGR01650 PD_CobS cobaltochela 90.6 0.26 5.7E-06 60.6 4.6 35 508-542 43-81 (327)
231 TIGR02782 TrbB_P P-type conjug 90.5 0.24 5.1E-06 60.6 4.1 27 521-547 128-156 (299)
232 PF13555 AAA_29: P-loop contai 90.5 0.23 5E-06 46.9 3.1 16 527-542 25-40 (62)
233 PRK10866 outer membrane biogen 90.3 21 0.00046 42.6 20.1 73 839-936 29-101 (243)
234 PRK14530 adenylate kinase; Pro 90.3 0.2 4.3E-06 58.0 3.2 17 526-542 4-20 (215)
235 PRK15453 phosphoribulokinase; 90.3 0.2 4.3E-06 60.4 3.2 24 525-548 5-30 (290)
236 cd00046 DEXDc DEAD-like helica 90.3 0.23 4.9E-06 51.2 3.2 21 527-547 2-22 (144)
237 PRK09183 transposase/IS protei 90.3 0.33 7.1E-06 58.2 5.0 56 481-542 58-119 (259)
238 PRK04841 transcriptional regul 90.2 64 0.0014 45.4 27.9 48 945-992 578-638 (903)
239 TIGR00152 dephospho-CoA kinase 90.1 0.2 4.3E-06 56.8 2.8 15 528-542 2-16 (188)
240 cd01131 PilT Pilus retraction 90.1 0.21 4.6E-06 57.3 3.1 18 525-542 1-18 (198)
241 KOG1173 Anaphase-promoting com 90.0 6.6 0.00014 51.0 15.9 125 839-967 309-441 (611)
242 PF12895 Apc3: Anaphase-promot 89.8 0.41 8.9E-06 46.9 4.4 49 918-966 32-84 (84)
243 cd01124 KaiC KaiC is a circadi 89.6 0.2 4.3E-06 56.1 2.3 16 527-542 1-16 (187)
244 PRK06851 hypothetical protein; 89.6 0.23 5E-06 62.2 3.0 23 525-547 214-238 (367)
245 cd01120 RecA-like_NTPases RecA 89.5 0.26 5.6E-06 53.0 3.0 16 527-542 1-16 (165)
246 COG2019 AdkA Archaeal adenylat 89.4 0.2 4.4E-06 55.7 2.0 17 526-542 5-21 (189)
247 PF13476 AAA_23: AAA domain; P 89.4 0.24 5.2E-06 55.5 2.8 18 525-542 19-36 (202)
248 PRK10536 hypothetical protein; 89.3 0.27 5.9E-06 58.6 3.3 37 5-41 178-215 (262)
249 TIGR03302 OM_YfiO outer membra 89.3 2 4.4E-05 49.8 10.4 26 843-868 71-96 (235)
250 PF09976 TPR_21: Tetratricopep 89.3 4.2 9E-05 44.2 12.1 96 843-966 49-144 (145)
251 TIGR02322 phosphon_PhnN phosph 89.2 0.25 5.4E-06 55.3 2.8 16 527-542 3-18 (179)
252 COG1474 CDC6 Cdc6-related prot 89.2 0.32 7E-06 61.1 4.0 23 525-547 42-66 (366)
253 PRK14531 adenylate kinase; Pro 89.2 0.27 5.9E-06 55.6 3.0 17 526-542 3-19 (183)
254 PRK15363 pathogenicity island 89.2 3.6 7.8E-05 45.9 11.4 92 841-962 34-125 (157)
255 cd05804 StaR_like StaR_like; a 89.1 65 0.0014 39.7 24.6 143 841-992 42-212 (355)
256 PF00437 T2SE: Type II/IV secr 89.0 0.24 5.3E-06 59.2 2.6 22 521-542 123-144 (270)
257 PRK02496 adk adenylate kinase; 89.0 0.29 6.2E-06 55.2 3.0 16 527-542 3-18 (184)
258 TIGR03420 DnaA_homol_Hda DnaA 88.9 0.28 6E-06 56.7 3.0 18 525-542 38-55 (226)
259 PLN02200 adenylate kinase fami 88.9 0.27 5.8E-06 58.1 2.8 18 525-542 43-60 (234)
260 PRK13531 regulatory ATPase Rav 88.9 0.28 6E-06 63.2 3.1 18 525-542 39-56 (498)
261 PLN03025 replication factor C 88.9 0.31 6.6E-06 60.0 3.4 18 525-542 34-51 (319)
262 PRK03846 adenylylsulfate kinas 88.7 0.42 9.1E-06 54.8 4.2 29 514-542 11-41 (198)
263 PRK12377 putative replication 88.7 0.42 9.1E-06 57.0 4.3 22 526-547 102-125 (248)
264 PRK14730 coaE dephospho-CoA ki 88.7 0.29 6.4E-06 56.1 2.9 16 527-542 3-18 (195)
265 PRK14532 adenylate kinase; Pro 88.7 0.29 6.2E-06 55.3 2.8 15 528-542 3-17 (188)
266 KOG1156 N-terminal acetyltrans 88.7 5.9 0.00013 52.1 14.3 202 899-1123 76-292 (700)
267 PRK07952 DNA replication prote 88.6 0.38 8.1E-06 57.3 3.8 17 526-542 100-116 (244)
268 COG4088 Predicted nucleotide k 88.6 0.32 7E-06 55.7 3.0 26 526-551 2-29 (261)
269 TIGR02533 type_II_gspE general 88.5 0.33 7.1E-06 63.2 3.4 30 513-542 225-259 (486)
270 PRK14961 DNA polymerase III su 88.5 0.31 6.8E-06 61.1 3.2 18 525-542 38-55 (363)
271 PRK08118 topology modulation p 88.5 0.32 7E-06 54.4 3.0 16 527-542 3-18 (167)
272 KOG0548 Molecular co-chaperone 88.4 9.7 0.00021 49.3 15.8 113 946-1079 304-418 (539)
273 PRK04296 thymidine kinase; Pro 88.4 0.31 6.7E-06 55.6 2.8 21 527-547 4-24 (190)
274 PRK13342 recombination factor 88.4 0.3 6.4E-06 62.3 2.9 18 525-542 36-53 (413)
275 PRK13900 type IV secretion sys 88.3 0.36 7.9E-06 59.9 3.5 24 519-542 154-177 (332)
276 PF13414 TPR_11: TPR repeat; P 88.2 2 4.4E-05 40.1 7.7 59 841-921 2-61 (69)
277 PRK10436 hypothetical protein; 88.2 0.39 8.4E-06 62.1 3.8 30 513-542 201-235 (462)
278 KOG2028 ATPase related to the 88.2 0.55 1.2E-05 57.5 4.7 58 482-542 119-179 (554)
279 KOG0553 TPR repeat-containing 88.2 1.8 3.9E-05 52.3 8.9 115 842-994 81-197 (304)
280 PRK14528 adenylate kinase; Pro 88.2 0.35 7.6E-06 55.0 3.0 16 527-542 3-18 (186)
281 PF04851 ResIII: Type III rest 88.2 0.43 9.3E-06 52.6 3.7 32 512-543 2-43 (184)
282 TIGR02538 type_IV_pilB type IV 88.0 0.41 9E-06 63.4 4.0 30 513-542 299-333 (564)
283 PRK00411 cdc6 cell division co 88.0 0.37 8E-06 60.7 3.4 18 525-542 55-72 (394)
284 PF02492 cobW: CobW/HypB/UreG, 88.0 0.33 7.2E-06 54.7 2.7 20 526-545 1-22 (178)
285 PRK06217 hypothetical protein; 88.0 0.34 7.4E-06 54.7 2.8 16 527-542 3-18 (183)
286 PRK00131 aroK shikimate kinase 88.0 0.39 8.4E-06 52.9 3.2 18 525-542 4-21 (175)
287 cd02023 UMPK Uridine monophosp 88.0 0.37 8E-06 54.9 3.1 21 527-547 1-23 (198)
288 PRK13851 type IV secretion sys 87.9 0.32 7E-06 60.5 2.8 26 517-542 154-179 (344)
289 PTZ00112 origin recognition co 87.9 0.45 9.7E-06 64.3 4.1 21 527-547 783-805 (1164)
290 PRK14731 coaE dephospho-CoA ki 87.9 0.34 7.3E-06 56.1 2.7 16 527-542 7-22 (208)
291 KOG2114 Vacuolar assembly/sort 87.8 22 0.00048 48.3 18.9 114 849-989 341-454 (933)
292 PRK15179 Vi polysaccharide bio 87.8 3 6.4E-05 56.8 11.7 115 839-966 83-214 (694)
293 cd02021 GntK Gluconate kinase 87.7 0.37 8E-06 52.3 2.8 16 527-542 1-16 (150)
294 cd00227 CPT Chloramphenicol (C 87.7 0.41 8.8E-06 53.7 3.1 17 526-542 3-19 (175)
295 PRK14732 coaE dephospho-CoA ki 87.7 0.36 7.9E-06 55.5 2.8 15 528-542 2-16 (196)
296 PF14532 Sigma54_activ_2: Sigm 87.7 0.46 9.9E-06 51.2 3.4 18 525-542 21-38 (138)
297 PRK14962 DNA polymerase III su 87.7 0.41 8.8E-06 62.1 3.5 18 525-542 36-53 (472)
298 PRK13407 bchI magnesium chelat 87.6 0.43 9.4E-06 59.2 3.6 17 526-542 30-46 (334)
299 KOG0547 Translocase of outer m 87.6 5.8 0.00013 50.7 13.0 31 840-870 392-422 (606)
300 PRK05480 uridine/cytidine kina 87.6 0.38 8.2E-06 55.4 2.9 23 525-547 6-30 (209)
301 PRK05541 adenylylsulfate kinas 87.5 0.43 9.3E-06 53.4 3.2 18 525-542 7-24 (176)
302 PRK08181 transposase; Validate 87.5 0.62 1.3E-05 56.3 4.7 56 481-542 61-123 (269)
303 PRK08356 hypothetical protein; 87.5 0.32 6.9E-06 55.6 2.2 16 527-542 7-22 (195)
304 PRK00279 adk adenylate kinase; 87.4 0.41 8.8E-06 55.5 3.0 16 527-542 2-17 (215)
305 PF00406 ADK: Adenylate kinase 87.4 0.38 8.2E-06 52.5 2.6 13 530-542 1-13 (151)
306 cd02028 UMPK_like Uridine mono 87.4 0.44 9.6E-06 53.9 3.2 21 527-547 1-23 (179)
307 PF03215 Rad17: Rad17 cell cyc 87.3 0.37 8E-06 63.1 2.9 18 525-542 45-62 (519)
308 TIGR01351 adk adenylate kinase 87.3 0.4 8.6E-06 55.4 2.8 15 528-542 2-16 (210)
309 KOG1129 TPR repeat-containing 87.3 11 0.00023 46.3 14.3 113 901-1035 259-379 (478)
310 TIGR00455 apsK adenylylsulfate 87.3 0.61 1.3E-05 52.6 4.2 34 514-547 5-42 (184)
311 PRK12370 invasion protein regu 87.3 23 0.0005 47.2 19.4 29 840-868 336-364 (553)
312 TIGR00635 ruvB Holliday juncti 87.1 0.36 7.7E-06 58.7 2.5 18 525-542 30-47 (305)
313 PRK07261 topology modulation p 87.1 0.43 9.3E-06 53.6 2.9 16 527-542 2-17 (171)
314 TIGR03574 selen_PSTK L-seryl-t 87.1 0.44 9.5E-06 56.5 3.1 16 527-542 1-16 (249)
315 PF01078 Mg_chelatase: Magnesi 87.0 0.47 1E-05 55.0 3.1 18 525-542 22-39 (206)
316 PRK13341 recombination factor 86.9 0.43 9.4E-06 64.7 3.3 24 519-542 44-69 (725)
317 PRK14733 coaE dephospho-CoA ki 86.9 0.42 9E-06 55.4 2.7 16 527-542 8-23 (204)
318 PRK15179 Vi polysaccharide bio 86.9 21 0.00046 48.8 18.9 95 897-996 48-150 (694)
319 PRK00081 coaE dephospho-CoA ki 86.9 0.42 9E-06 54.7 2.7 16 527-542 4-19 (194)
320 PRK02603 photosystem I assembl 86.8 8.1 0.00018 43.1 12.8 93 841-960 34-126 (172)
321 PRK10078 ribose 1,5-bisphospho 86.7 0.42 9E-06 54.2 2.5 17 526-542 3-19 (186)
322 KOG0989 Replication factor C, 86.7 0.55 1.2E-05 56.8 3.5 19 525-543 57-75 (346)
323 cd02029 PRK_like Phosphoribulo 86.7 0.5 1.1E-05 56.7 3.2 22 528-549 2-25 (277)
324 cd03115 SRP The signal recogni 86.6 0.5 1.1E-05 52.6 3.1 16 527-542 2-17 (173)
325 COG3063 PilF Tfp pilus assembl 86.6 16 0.00035 43.2 15.0 124 839-966 66-199 (250)
326 PF00485 PRK: Phosphoribulokin 86.6 0.5 1.1E-05 53.9 3.1 21 528-548 2-24 (194)
327 PF04097 Nic96: Nup93/Nic96; 86.5 19 0.0004 48.8 18.1 131 848-978 264-452 (613)
328 KOG0495 HAT repeat protein [RN 86.5 65 0.0014 43.0 21.4 142 839-993 615-780 (913)
329 PF13173 AAA_14: AAA domain 86.5 0.52 1.1E-05 50.2 3.0 18 525-542 2-19 (128)
330 PRK06547 hypothetical protein; 86.5 0.48 1E-05 53.4 2.8 18 525-542 15-32 (172)
331 cd02024 NRK1 Nicotinamide ribo 86.5 0.47 1E-05 54.3 2.8 16 527-542 1-16 (187)
332 PRK07667 uridine kinase; Provi 86.4 0.51 1.1E-05 54.0 3.1 22 526-547 18-41 (193)
333 PRK08154 anaerobic benzoate ca 86.4 0.51 1.1E-05 58.0 3.2 18 525-542 133-150 (309)
334 PRK00440 rfc replication facto 86.3 0.59 1.3E-05 56.9 3.8 18 525-542 38-55 (319)
335 KOG1174 Anaphase-promoting com 86.2 29 0.00062 44.0 17.5 139 841-990 231-392 (564)
336 TIGR02525 plasmid_TraJ plasmid 86.1 0.72 1.6E-05 58.1 4.4 27 521-547 145-173 (372)
337 PRK10751 molybdopterin-guanine 86.0 0.54 1.2E-05 53.2 2.9 24 525-548 6-31 (173)
338 TIGR02552 LcrH_SycD type III s 86.0 4 8.8E-05 42.9 9.4 94 842-965 17-110 (135)
339 cd02020 CMPK Cytidine monophos 86.0 0.58 1.3E-05 50.1 3.1 16 527-542 1-16 (147)
340 PRK08903 DnaA regulatory inact 86.0 0.53 1.1E-05 54.9 3.0 18 525-542 42-59 (227)
341 KOG1130 Predicted G-alpha GTPa 85.9 48 0.001 42.0 19.0 18 1021-1038 242-259 (639)
342 KOG2066 Vacuolar assembly/sort 85.9 62 0.0013 44.0 21.3 80 843-938 506-585 (846)
343 CHL00033 ycf3 photosystem I as 85.9 5 0.00011 44.5 10.4 104 841-977 34-137 (168)
344 cd02027 APSK Adenosine 5'-phos 85.8 0.61 1.3E-05 51.2 3.1 16 527-542 1-16 (149)
345 PF01583 APS_kinase: Adenylyls 85.8 0.64 1.4E-05 51.7 3.3 21 527-547 4-26 (156)
346 PRK08099 bifunctional DNA-bind 85.8 0.52 1.1E-05 59.9 3.0 23 525-547 219-243 (399)
347 PRK14738 gmk guanylate kinase; 85.8 0.45 9.7E-06 55.0 2.2 18 525-542 13-30 (206)
348 PRK14526 adenylate kinase; Pro 85.8 0.55 1.2E-05 54.7 3.0 15 528-542 3-17 (211)
349 PRK14527 adenylate kinase; Pro 85.8 0.58 1.3E-05 53.2 3.1 18 525-542 6-23 (191)
350 PRK00080 ruvB Holliday junctio 85.7 0.46 9.9E-06 58.7 2.4 18 525-542 51-68 (328)
351 KOG1125 TPR repeat-containing 85.7 10 0.00022 49.4 14.1 54 905-966 437-490 (579)
352 PRK06645 DNA polymerase III su 85.7 0.56 1.2E-05 61.3 3.3 18 525-542 43-60 (507)
353 COG5192 BMS1 GTP-binding prote 85.7 0.56 1.2E-05 59.4 3.0 19 530-548 74-94 (1077)
354 KOG2280 Vacuolar assembly/sort 85.7 61 0.0013 43.9 21.0 71 1034-1104 751-822 (829)
355 TIGR03499 FlhF flagellar biosy 85.6 0.66 1.4E-05 56.3 3.6 18 525-542 194-211 (282)
356 KOG1524 WD40 repeat-containing 85.6 5.3 0.00011 51.1 11.2 149 913-1106 575-727 (737)
357 PRK12402 replication factor C 85.5 0.47 1E-05 58.2 2.3 17 526-542 37-53 (337)
358 PRK14734 coaE dephospho-CoA ki 85.4 0.56 1.2E-05 54.1 2.8 19 527-545 3-22 (200)
359 PLN02422 dephospho-CoA kinase 85.4 0.55 1.2E-05 55.4 2.7 19 527-545 3-22 (232)
360 PRK14722 flhF flagellar biosyn 85.3 1.1 2.4E-05 56.5 5.4 18 525-542 137-154 (374)
361 PTZ00088 adenylate kinase 1; P 85.3 0.6 1.3E-05 55.1 3.0 15 528-542 9-23 (229)
362 PRK14956 DNA polymerase III su 85.3 0.58 1.3E-05 60.4 3.0 16 527-542 42-57 (484)
363 PRK14963 DNA polymerase III su 85.3 0.6 1.3E-05 61.1 3.3 17 526-542 37-53 (504)
364 cd00464 SK Shikimate kinase (S 85.2 0.66 1.4E-05 50.2 3.1 16 527-542 1-16 (154)
365 PRK00889 adenylylsulfate kinas 85.2 0.63 1.4E-05 52.0 3.0 22 526-547 5-28 (175)
366 PHA02530 pseT polynucleotide k 85.2 0.52 1.1E-05 57.2 2.5 17 526-542 3-19 (300)
367 COG0572 Udk Uridine kinase [Nu 85.1 0.6 1.3E-05 54.4 2.8 21 527-547 10-32 (218)
368 PRK06620 hypothetical protein; 85.1 0.54 1.2E-05 54.9 2.4 17 526-542 45-61 (214)
369 TIGR01313 therm_gnt_kin carboh 85.1 0.52 1.1E-05 51.9 2.2 15 528-542 1-15 (163)
370 PRK06893 DNA replication initi 85.1 0.54 1.2E-05 55.3 2.4 18 525-542 39-56 (229)
371 PRK13695 putative NTPase; Prov 85.0 0.68 1.5E-05 51.8 3.1 15 528-542 3-17 (174)
372 TIGR02524 dot_icm_DotB Dot/Icm 85.0 0.88 1.9E-05 57.1 4.4 31 517-547 125-158 (358)
373 PF04665 Pox_A32: Poxvirus A32 85.0 0.6 1.3E-05 55.4 2.7 18 525-542 13-30 (241)
374 smart00763 AAA_PrkA PrkA AAA d 84.9 0.66 1.4E-05 57.9 3.2 23 525-547 78-102 (361)
375 PF13414 TPR_11: TPR repeat; P 84.8 3.2 6.8E-05 38.8 7.0 59 900-966 5-64 (69)
376 COG2804 PulE Type II secretory 84.7 0.67 1.4E-05 59.6 3.2 29 514-542 242-275 (500)
377 PRK08084 DNA replication initi 84.7 0.57 1.2E-05 55.3 2.5 18 525-542 45-62 (235)
378 PRK04182 cytidylate kinase; Pr 84.7 0.64 1.4E-05 51.6 2.7 16 527-542 2-17 (180)
379 PRK14574 hmsH outer membrane p 84.6 24 0.00052 49.2 18.0 175 903-1105 39-229 (822)
380 PRK14974 cell division protein 84.5 0.68 1.5E-05 57.5 3.1 24 525-548 140-165 (336)
381 PF08433 KTI12: Chromatin asso 84.4 0.69 1.5E-05 55.9 3.0 22 526-547 2-25 (270)
382 PTZ00301 uridine kinase; Provi 84.3 0.71 1.5E-05 53.8 2.9 16 527-542 5-20 (210)
383 TIGR00643 recG ATP-dependent D 84.3 0.94 2E-05 61.0 4.5 40 508-547 230-278 (630)
384 cd05804 StaR_like StaR_like; a 84.2 81 0.0018 38.8 21.0 88 943-1040 117-212 (355)
385 TIGR02173 cyt_kin_arch cytidyl 84.1 0.7 1.5E-05 50.9 2.7 16 527-542 2-17 (171)
386 KOG0495 HAT repeat protein [RN 84.1 1.1E+02 0.0024 41.1 21.8 120 842-966 516-644 (913)
387 smart00299 CLH Clathrin heavy 84.1 11 0.00024 40.4 11.9 49 943-991 72-121 (140)
388 PRK06696 uridine kinase; Valid 83.9 0.76 1.6E-05 53.7 3.0 23 525-547 22-46 (223)
389 PRK04841 transcriptional regul 83.8 48 0.001 46.6 20.9 132 894-1039 337-477 (903)
390 PF05673 DUF815: Protein of un 83.7 1 2.3E-05 53.4 4.0 26 525-550 52-79 (249)
391 COG3071 HemY Uncharacterized e 83.6 1.4E+02 0.003 38.1 23.0 22 915-936 191-212 (400)
392 PRK05439 pantothenate kinase; 83.6 0.75 1.6E-05 56.5 2.9 22 526-547 87-110 (311)
393 COG2909 MalT ATP-dependent tra 83.6 11 0.00024 51.4 13.5 41 896-936 345-385 (894)
394 PRK05800 cobU adenosylcobinami 83.6 0.63 1.4E-05 52.4 2.1 16 527-542 3-18 (170)
395 KOG1524 WD40 repeat-containing 83.6 10 0.00022 48.8 12.3 54 943-996 647-700 (737)
396 PRK03992 proteasome-activating 83.4 0.66 1.4E-05 58.8 2.4 19 524-542 164-182 (389)
397 cd01983 Fer4_NifH The Fer4_Nif 83.3 1 2.2E-05 43.9 3.3 21 527-547 1-23 (99)
398 PF08477 Miro: Miro-like prote 83.3 0.74 1.6E-05 47.5 2.3 15 528-542 2-16 (119)
399 TIGR00041 DTMP_kinase thymidyl 83.3 0.86 1.9E-05 51.6 3.0 16 527-542 5-20 (195)
400 PRK14737 gmk guanylate kinase; 83.2 0.77 1.7E-05 52.4 2.6 18 525-542 4-21 (186)
401 PRK04195 replication factor C 83.2 0.77 1.7E-05 59.9 2.9 18 525-542 39-56 (482)
402 PHA02244 ATPase-like protein 83.2 1 2.2E-05 56.4 3.9 22 521-542 115-136 (383)
403 TIGR01420 pilT_fam pilus retra 83.2 1.1 2.4E-05 55.9 4.2 18 525-542 122-139 (343)
404 PTZ00451 dephospho-CoA kinase; 83.2 0.77 1.7E-05 54.7 2.7 16 527-542 3-18 (244)
405 TIGR01242 26Sp45 26S proteasom 83.2 0.69 1.5E-05 58.0 2.4 18 525-542 156-173 (364)
406 PLN02674 adenylate kinase 83.1 0.87 1.9E-05 54.2 3.0 18 525-542 31-48 (244)
407 PRK10803 tol-pal system protei 83.0 6.5 0.00014 47.5 10.4 100 841-965 141-242 (263)
408 PRK13946 shikimate kinase; Pro 83.0 0.91 2E-05 51.5 3.1 18 525-542 10-27 (184)
409 TIGR00176 mobB molybdopterin-g 83.0 0.99 2.1E-05 50.1 3.3 22 527-548 1-24 (155)
410 COG1102 Cmk Cytidylate kinase 82.9 0.82 1.8E-05 50.9 2.5 15 528-542 3-17 (179)
411 PRK06761 hypothetical protein; 82.9 0.83 1.8E-05 55.5 2.8 17 526-542 4-20 (282)
412 PF12688 TPR_5: Tetratrico pep 82.9 13 0.00028 39.9 11.4 111 842-977 1-117 (120)
413 PRK11331 5-methylcytosine-spec 82.8 0.84 1.8E-05 58.5 2.9 18 525-542 194-211 (459)
414 KOG1173 Anaphase-promoting com 82.8 8 0.00017 50.3 11.3 28 843-870 347-374 (611)
415 PF06414 Zeta_toxin: Zeta toxi 82.8 0.74 1.6E-05 52.8 2.3 18 525-542 15-32 (199)
416 TIGR03263 guanyl_kin guanylate 82.8 0.8 1.7E-05 51.2 2.5 17 526-542 2-18 (180)
417 PRK05973 replicative DNA helic 82.7 0.9 2E-05 53.9 3.0 19 525-543 64-82 (237)
418 PRK13947 shikimate kinase; Pro 82.7 0.93 2E-05 50.2 2.9 16 527-542 3-18 (171)
419 KOG3079 Uridylate kinase/adeny 82.7 0.85 1.8E-05 51.7 2.6 23 525-547 8-32 (195)
420 KOG0624 dsRNA-activated protei 82.6 81 0.0018 39.3 18.7 23 846-868 42-64 (504)
421 PRK00300 gmk guanylate kinase; 82.6 0.88 1.9E-05 52.0 2.8 22 526-547 6-29 (205)
422 KOG2047 mRNA splicing factor [ 82.5 95 0.0021 41.6 20.4 122 837-966 382-537 (835)
423 cd02025 PanK Pantothenate kina 82.5 0.93 2E-05 53.1 3.0 20 528-547 2-23 (220)
424 PF00910 RNA_helicase: RNA hel 82.5 0.89 1.9E-05 47.1 2.5 20 528-547 1-22 (107)
425 COG0529 CysC Adenylylsulfate k 82.5 1.4 3.1E-05 49.8 4.1 35 513-547 9-47 (197)
426 KOG1128 Uncharacterized conser 82.4 7.5 0.00016 51.8 11.1 186 896-1105 409-613 (777)
427 PRK10689 transcription-repair 82.4 0.89 1.9E-05 64.8 3.2 66 477-547 563-643 (1147)
428 cd00071 GMPK Guanosine monopho 82.4 0.87 1.9E-05 49.3 2.5 16 527-542 1-16 (137)
429 PF12895 Apc3: Anaphase-promot 82.3 3.5 7.5E-05 40.4 6.5 74 912-991 3-83 (84)
430 PRK15359 type III secretion sy 82.2 17 0.00036 39.7 12.3 85 902-994 28-120 (144)
431 PRK13764 ATPase; Provisional 82.1 1.3 2.7E-05 59.0 4.3 27 521-547 253-281 (602)
432 TIGR00235 udk uridine kinase. 82.1 0.97 2.1E-05 52.1 2.9 21 527-547 8-30 (207)
433 PF07719 TPR_2: Tetratricopept 82.0 2.1 4.5E-05 34.3 4.0 27 842-868 1-27 (34)
434 PTZ00454 26S protease regulato 82.0 0.82 1.8E-05 58.2 2.4 18 525-542 179-196 (398)
435 PF10602 RPN7: 26S proteasome 81.9 12 0.00026 42.6 11.5 103 840-966 34-139 (177)
436 PF13432 TPR_16: Tetratricopep 81.8 3.2 7E-05 38.4 5.8 55 904-966 3-57 (65)
437 PRK10917 ATP-dependent DNA hel 81.7 1 2.2E-05 61.2 3.4 41 507-547 255-304 (681)
438 KOG0729 26S proteasome regulat 81.7 1.6 3.5E-05 51.5 4.4 18 525-542 211-228 (435)
439 TIGR03878 thermo_KaiC_2 KaiC d 81.7 0.81 1.8E-05 54.9 2.2 18 525-542 36-53 (259)
440 COG0467 RAD55 RecA-superfamily 81.7 1 2.3E-05 53.7 3.1 19 524-542 22-40 (260)
441 PF12846 AAA_10: AAA-like doma 81.6 0.99 2.2E-05 53.9 2.9 18 525-542 1-18 (304)
442 PLN02459 probable adenylate ki 81.5 1.1 2.3E-05 53.9 3.0 16 527-542 31-46 (261)
443 cd01394 radB RadB. The archaea 81.4 1.1 2.4E-05 51.8 3.0 18 526-543 20-37 (218)
444 PF00448 SRP54: SRP54-type pro 81.3 1.1 2.4E-05 51.6 2.9 23 525-547 1-25 (196)
445 cd00268 DEADc DEAD-box helicas 81.2 1.7 3.8E-05 49.3 4.5 35 513-547 21-58 (203)
446 PF02689 Herpes_Helicase: Heli 81.2 1.2 2.6E-05 59.2 3.6 21 717-737 738-758 (818)
447 TIGR02788 VirB11 P-type DNA tr 81.1 1 2.2E-05 55.4 2.8 22 521-542 140-161 (308)
448 COG3854 SpoIIIAA ncharacterize 81.1 1.1 2.4E-05 52.2 2.8 27 521-547 132-161 (308)
449 PRK08116 hypothetical protein; 81.0 1.6 3.4E-05 52.8 4.2 16 527-542 116-131 (268)
450 PRK14529 adenylate kinase; Pro 81.0 1.1 2.5E-05 52.6 3.0 20 528-547 3-24 (223)
451 PRK14964 DNA polymerase III su 81.0 1.1 2.4E-05 58.3 3.2 18 525-542 35-52 (491)
452 TIGR02552 LcrH_SycD type III s 81.0 11 0.00024 39.6 10.2 87 901-995 20-114 (135)
453 TIGR00580 mfd transcription-re 80.9 1 2.3E-05 62.7 3.1 42 506-547 444-494 (926)
454 TIGR01241 FtsH_fam ATP-depende 80.9 0.94 2E-05 59.3 2.5 18 525-542 88-105 (495)
455 PRK05416 glmZ(sRNA)-inactivati 80.8 1 2.2E-05 54.9 2.6 19 526-544 7-26 (288)
456 PF01121 CoaE: Dephospho-CoA k 80.8 1.1 2.4E-05 51.0 2.7 15 528-542 3-17 (180)
457 KOG1970 Checkpoint RAD17-RFC c 80.7 1.2 2.7E-05 57.3 3.3 18 525-542 110-127 (634)
458 PRK13949 shikimate kinase; Pro 80.6 1.2 2.5E-05 50.1 2.8 16 527-542 3-18 (169)
459 KOG4340 Uncharacterized conser 80.6 24 0.00052 42.8 13.3 147 912-1079 11-170 (459)
460 KOG0926 DEAH-box RNA helicase 80.6 0.93 2E-05 60.0 2.2 61 508-569 253-319 (1172)
461 PRK00625 shikimate kinase; Pro 80.6 1 2.2E-05 51.0 2.3 16 527-542 2-17 (173)
462 PRK15331 chaperone protein Sic 80.5 13 0.00028 42.0 10.7 94 843-966 38-131 (165)
463 PF01695 IstB_IS21: IstB-like 80.4 1.3 2.8E-05 50.3 3.1 18 525-542 47-64 (178)
464 PRK14957 DNA polymerase III su 80.4 1.3 2.8E-05 58.5 3.5 18 525-542 38-55 (546)
465 PRK13948 shikimate kinase; Pro 80.4 0.93 2E-05 51.7 2.0 18 525-542 10-27 (182)
466 cd00544 CobU Adenosylcobinamid 80.4 1 2.3E-05 50.7 2.3 17 527-543 1-17 (169)
467 COG0378 HypB Ni2+-binding GTPa 80.3 1.5 3.3E-05 50.2 3.6 24 527-550 15-40 (202)
468 TIGR00750 lao LAO/AO transport 80.3 1.3 2.7E-05 54.4 3.2 24 525-548 34-59 (300)
469 PRK03731 aroL shikimate kinase 80.2 1.3 2.9E-05 49.1 3.1 17 526-542 3-19 (171)
470 PRK14958 DNA polymerase III su 80.2 1.2 2.6E-05 58.4 3.1 18 525-542 38-55 (509)
471 PRK14949 DNA polymerase III su 80.2 1.2 2.6E-05 61.0 3.1 18 525-542 38-55 (944)
472 cd01672 TMPK Thymidine monopho 80.2 1.3 2.9E-05 49.7 3.1 21 527-547 2-24 (200)
473 TIGR00064 ftsY signal recognit 80.1 1.3 2.7E-05 53.7 3.0 23 525-547 72-96 (272)
474 COG0563 Adk Adenylate kinase a 80.1 1.3 2.8E-05 50.4 2.9 16 527-542 2-17 (178)
475 TIGR01618 phage_P_loop phage n 80.1 1.1 2.3E-05 52.7 2.4 18 525-542 12-29 (220)
476 KOG3785 Uncharacterized conser 80.0 13 0.00029 45.7 11.3 78 899-976 36-127 (557)
477 PRK12723 flagellar biosynthesi 80.0 2 4.4E-05 54.5 4.9 23 525-547 174-198 (388)
478 TIGR02030 BchI-ChlI magnesium 80.0 1.4 3E-05 54.9 3.4 18 525-542 25-42 (337)
479 PHA02544 44 clamp loader, smal 80.0 1.1 2.4E-05 54.8 2.6 18 525-542 43-60 (316)
480 PRK10370 formate-dependent nit 80.0 35 0.00075 39.5 14.5 86 940-1039 73-169 (198)
481 KOG0962 DNA repair protein RAD 79.8 0.78 1.7E-05 64.1 1.3 30 513-542 14-44 (1294)
482 cd03112 CobW_like The function 79.7 1.3 2.8E-05 49.2 2.7 17 526-542 1-17 (158)
483 PF00580 UvrD-helicase: UvrD/R 79.7 0.58 1.3E-05 56.3 0.1 55 3-64 256-311 (315)
484 PF00005 ABC_tran: ABC transpo 79.6 1.3 2.8E-05 47.1 2.6 18 525-542 11-28 (137)
485 TIGR01526 nadR_NMN_Atrans nico 79.6 1.3 2.7E-05 55.0 2.9 23 525-547 162-186 (325)
486 COG2805 PilT Tfp pilus assembl 79.6 1.6 3.6E-05 52.8 3.7 30 519-548 118-150 (353)
487 PRK09435 membrane ATPase/prote 79.6 1.3 2.9E-05 54.9 3.1 25 525-549 56-82 (332)
488 PTZ00424 helicase 45; Provisio 79.6 1.8 3.8E-05 54.7 4.2 35 513-547 50-87 (401)
489 TIGR03689 pup_AAA proteasome A 79.6 1.1 2.3E-05 58.7 2.3 18 525-542 216-233 (512)
490 TIGR02237 recomb_radB DNA repa 79.4 1.1 2.4E-05 51.4 2.2 18 525-542 12-29 (209)
491 TIGR02902 spore_lonB ATP-depen 79.3 1.3 2.8E-05 58.5 3.0 18 525-542 86-103 (531)
492 PF06745 KaiC: KaiC; InterPro 79.3 1.5 3.3E-05 51.0 3.3 18 525-542 19-36 (226)
493 PF00158 Sigma54_activat: Sigm 79.3 1.8 3.8E-05 48.8 3.7 20 523-542 20-39 (168)
494 PF01926 MMR_HSR1: 50S ribosom 79.2 1.2 2.7E-05 46.1 2.2 15 528-542 2-16 (116)
495 PRK12608 transcription termina 79.1 1.3 2.8E-05 55.7 2.7 16 527-542 135-150 (380)
496 TIGR00764 lon_rel lon-related 79.1 1.5 3.3E-05 58.7 3.6 24 524-547 36-61 (608)
497 PRK05703 flhF flagellar biosyn 79.0 2 4.4E-05 55.1 4.6 18 525-542 221-238 (424)
498 PHA02575 1 deoxynucleoside mon 79.0 1.3 2.9E-05 51.9 2.6 16 527-542 2-17 (227)
499 PTZ00361 26 proteosome regulat 78.9 1.2 2.6E-05 57.3 2.5 18 525-542 217-234 (438)
500 KOG0292 Vesicle coat complex C 78.9 14 0.00029 50.1 11.6 137 800-936 613-778 (1202)
No 1
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=100.00 E-value=3.6e-51 Score=491.93 Aligned_cols=270 Identities=37% Similarity=0.515 Sum_probs=241.1
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCCCc
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMHP 81 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmhP 81 (1987)
.+|..|+||||.|++||++++||.+ +++++||||||+||+|+++.+.+..+++.+|||+||+..|+.+++|.+||||||
T Consensus 567 ~kfr~VLiDEaTQatEpe~LiPlvl-G~kq~VlVGDh~QLgpvi~~kK~a~Agl~qsLferli~lg~~P~~L~vQYRmhP 645 (935)
T KOG1802|consen 567 FKFRTVLIDEATQATEPECLIPLVL-GAKQLVLVGDHKQLGPVIMCKKAATAGLSQSLFERLISLGIKPIRLQVQYRMHP 645 (935)
T ss_pred ccccEEEEecccccCCcchhhhhhh-cceeEEEeccccccCceeeeHHHHHhHHHHHHHHHHHhccCCceEEEEeeeeCh
Confidence 3689999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCccccCccccccccccccCCCCCCC-CeEEEEeCCCcccc--cccccCCHHHHHHHHHHHHHHHHHhh
Q 000162 82 SISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYG-PYSFINVFGGREEF--IEHSCRNMVEVSVVMKILRNLYKAWV 158 (1987)
Q Consensus 82 ~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~-pl~fidV~~g~E~~--~~~S~~N~~Ea~~V~~lV~~L~~~~~ 158 (1987)
.|++|||..||+|.|.++-....+......+|.|... |+.|... .|.|+. .|+|+.|..||..+.++++.|++.+.
T Consensus 646 ~lSefpsn~fY~G~LqnGVT~~~R~~~g~~~pwp~p~~pl~fy~~-~g~eeisasGtSf~Nr~Ea~~~ekii~~l~~~gv 724 (935)
T KOG1802|consen 646 ALSEFPSNMFYEGELQNGVTEIERSPLGVDFPWPQPDKPLFFYVC-YGQEEISASGTSFLNRTEAANCEKIITKLLKSGV 724 (935)
T ss_pred hhhhcchhhhccchhhcCcchhhhccCCCCCCCCCCCCccceEEe-ccceeeeccccceecHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999998877776665555544333 5555555 777765 78999999999999999999999875
Q ss_pred cccCCccEEEEccCHHHHHHHHHHhhhhhhccc--CccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEe
Q 000162 159 ESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIA--GFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVA 236 (1987)
Q Consensus 159 ~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~--~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVA 236 (1987)
.+..|||||||.+|+.+|-+.++..-.... ...|.|.|||+|||+|+|+||+||||++....|||+.|++|+|||
T Consensus 725 ---~~~qIGVITpYegQr~~i~~ym~~~gsl~~~ly~~veVasVDaFQGrEKdfIIlSCVRsn~~qgIGFl~d~RRlNVa 801 (935)
T KOG1802|consen 725 ---KPSQIGVITPYEGQRSYIVNYMQTNGSLHKDLYKEVEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRRLNVA 801 (935)
T ss_pred ---CHHHeeeecccchhHHHHHHHHHhcCccccchhheeEEEeeccccCcccceEEEEEeecccccccccccCchhhhhh
Confidence 678999999999999999998864321111 135799999999999999999999999999999999999999999
Q ss_pred cccccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccC
Q 000162 237 LTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNID 277 (1987)
Q Consensus 237 LTRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~ 277 (1987)
+||||++|+||||+..|.++ ++|.+++.++++++|++..+
T Consensus 802 LTRaK~glvivGN~~~L~k~-~LW~~li~h~~eke~l~eg~ 841 (935)
T KOG1802|consen 802 LTRAKYGLVIVGNPKVLRKH-PLWGHLITHYKEKEVLVEGP 841 (935)
T ss_pred hhhcccceEEecCHHHhhhc-hHHHHHHHHhhcccceeecc
Confidence 99999999999999999995 99999999999999999865
No 2
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.2e-45 Score=444.44 Aligned_cols=265 Identities=33% Similarity=0.464 Sum_probs=227.6
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC--CCCceecccccCCC
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL--GHPKHLLSMQYRMH 80 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~--g~p~~~L~~QYRmh 80 (1987)
.||+||||||+|+.||++++|+. ..+++||+|||+||||++.+..+...|++.|+|+|+... +....+|++|||||
T Consensus 358 ~fD~vIIDEaaQamE~~cWipvl--k~kk~ILaGDp~QLpP~v~S~~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QYRMn 435 (649)
T KOG1803|consen 358 TFDLVIIDEAAQAMEPQCWIPVL--KGKKFILAGDPKQLPPTVLSDKAKRGGLQVSLLERLAEKFGNLSKILLNEQYRMN 435 (649)
T ss_pred CCCEEEEehhhhhccchhhhHHh--cCCceEEeCCcccCCcccccchhhhccchhhHHHHHHHHcccchhhhhhhhhcch
Confidence 49999999999999999999995 347999999999999999999999999999999999874 45578999999999
Q ss_pred ccccccccccccCCccccCccccccccccccC---CCCCCCCeEEEEeCCCcc------cccccccCCHHHHHHHHHHHH
Q 000162 81 PSISFFPNSYFYENKIRDAPTVRKRSYEKRFL---PGPMYGPYSFINVFGGRE------EFIEHSCRNMVEVSVVMKILR 151 (1987)
Q Consensus 81 P~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l---~~p~~~pl~fidV~~g~E------~~~~~S~~N~~Ea~~V~~lV~ 151 (1987)
..|+.|+|..||+|++.+++.+..+....... ..+.+.|++++|+.+... +....|+.|..||+.|+..+.
T Consensus 436 ~~Im~wsn~~fY~~qlka~~~v~~~lL~dl~~v~~t~~t~~PlvlvDT~~~~~~e~~~e~~~~~S~~N~gEa~Iv~~Hv~ 515 (649)
T KOG1803|consen 436 EKIMNWSNEVFYNGQLKAASSVASHLLRDLPNVLATESTKSPLVLVDTQGEKDEEKRGEEEELGSKYNEGEAKIVMEHVK 515 (649)
T ss_pred HHHhhCcHhhhcCCeeeecchhhhhhhhcccCCCCccccCCcEEEEecccchhhhhccchhhccccCCHHHHHHHHHHHH
Confidence 99999999999999999998887654322111 123467999999943221 113358999999999999999
Q ss_pred HHHHHhhcccCCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCC
Q 000162 152 NLYKAWVESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQ 231 (1987)
Q Consensus 152 ~L~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~n 231 (1987)
.|+..+. ++.+|||||||++|+.++++.. ..+..++.|+|||+|||+|+|+||||+||+|+.+.+||+.+.+
T Consensus 516 ~L~~~gV---~p~dIaVIsPY~aQv~llR~~~-----~~~~~~veV~TVD~fQGrEkdvVIfsmVRSN~k~evGFL~e~R 587 (649)
T KOG1803|consen 516 RLLEAGV---QPSDIAVISPYNAQVSLLREED-----EEDFRDVEVGTVDGFQGREKDVVIFSLVRSNDKGEVGFLGETR 587 (649)
T ss_pred HHHHcCC---ChhHeEEeccchHHHHHHhhcc-----cccCccceeecccccccceeeEEEEEEEeecCcccccccCCcc
Confidence 9998865 7789999999999999999322 2334569999999999999999999999999999999999999
Q ss_pred ceEEecccccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccC
Q 000162 232 RINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNID 277 (1987)
Q Consensus 232 RLNVALTRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~ 277 (1987)
|+|||+||||+++.||||..++...+...+.++.++.+++-++.++
T Consensus 588 RLNVAiTRaRRh~~vIgds~tl~~~~~~l~k~~~f~~~~~~~~~p~ 633 (649)
T KOG1803|consen 588 RLNVAITRARRHFVVIGDSRTLKEGNEFLKKLVEFLEENKLVFGPS 633 (649)
T ss_pred eeeEEEEeccceEEEEcCcHHHHhhHHHHHHHHHHhhhcceecccc
Confidence 9999999999999999999999866678899999999988877543
No 3
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=100.00 E-value=1e-43 Score=458.68 Aligned_cols=264 Identities=34% Similarity=0.450 Sum_probs=223.8
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC-CCCceecccccCCC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL-GHPKHLLSMQYRMH 80 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~-g~p~~~L~~QYRmh 80 (1987)
..||+||||||+|++||++++|+. .++++||||||+||||++.+.. ..+++.|+|+||... +...++|++|||||
T Consensus 360 ~~Fd~vIIDEAsQ~~ep~~lipl~--~~~~~vLvGD~~QLpP~v~s~~--~~~l~~SlferL~~~~~~~~~~L~~QYRMh 435 (637)
T TIGR00376 360 WEFDVAVIDEASQAMEPSCLIPLL--KARKLILAGDHKQLPPTILSHD--AEELELTLFERLIKEYPERSRTLNVQYRMN 435 (637)
T ss_pred CCCCEEEEECccccchHHHHHHHh--hCCeEEEecChhhcCCcccccc--ccccchhHHHHHHHhCCCceeecchhcCCC
Confidence 479999999999999999999996 3479999999999999997644 457899999999875 44578999999999
Q ss_pred ccccccccccccCCccccCcccccccccccc--CC------CCCCCCeEEEEeCCCcc----cccccccCCHHHHHHHHH
Q 000162 81 PSISFFPNSYFYENKIRDAPTVRKRSYEKRF--LP------GPMYGPYSFINVFGGRE----EFIEHSCRNMVEVSVVMK 148 (1987)
Q Consensus 81 P~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~--l~------~p~~~pl~fidV~~g~E----~~~~~S~~N~~Ea~~V~~ 148 (1987)
|+|++|+|..||+|.|.+++.+..+...... .+ .....|+.|+|+.+... ...++|+.|..||..|.+
T Consensus 436 ~~I~~f~s~~fY~g~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~fidt~g~~~~e~~~~~~~S~~N~~EA~~V~~ 515 (637)
T TIGR00376 436 QKIMEFPSREFYNGKLTAHESVANILLRDLPKVEATDSEDDLETEIPLLFIDTSGCELFELKEADSTSKYNPGEAELVSE 515 (637)
T ss_pred HHHHhhhHHhhcCCccccCcchhhhhhhhcccccccccccccCCCCCEEEEECCCccccccccCCCCCcCCHHHHHHHHH
Confidence 9999999999999999988766543211100 00 01124899999943321 225679999999999999
Q ss_pred HHHHHHHHhhcccCCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccCEEEEEecccCCCCcccCCC
Q 000162 149 ILRNLYKAWVESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFAS 228 (1987)
Q Consensus 149 lV~~L~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~ 228 (1987)
++..|+..+. ++.+|||||||++|+.+|++.|... ...+.|.|||+|||+|+|+||+|+||++..+.+||+.
T Consensus 516 ~v~~l~~~g~---~~~~IgVItPY~aQv~~L~~~l~~~-----~~~i~v~TVd~fQG~E~DvIi~S~vrsn~~~~~gFl~ 587 (637)
T TIGR00376 516 IIQALVKMGV---PANDIGVITPYDAQVDLLRQLLEHR-----HIDIEVSSVDGFQGREKEVIIISFVRSNRKGEVGFLK 587 (637)
T ss_pred HHHHHHhcCC---CcceEEEEcccHHHHHHHHHHHHhh-----CCCeEEccccccCCccccEEEEEEEecCCCCCccccc
Confidence 9999987654 5679999999999999999998643 2358999999999999999999999999988899999
Q ss_pred CCCceEEecccccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccCc
Q 000162 229 TPQRINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNIDE 278 (1987)
Q Consensus 229 d~nRLNVALTRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~~ 278 (1987)
|++|+|||+||||++||||||..+|..+ +.|+.++++++++||+..++.
T Consensus 588 d~rRLNVAlTRAK~~LiIvGn~~~l~~~-~~~~~li~~~~~~~~~~~~~~ 636 (637)
T TIGR00376 588 DLRRLNVALTRARRKLIVIGDSRTLSNH-KFYKRLIEWCKQHGEVREAFK 636 (637)
T ss_pred CcceeeeehhhhhCceEEEECHHHhccC-hHHHHHHHHHHHCCCEEcCCC
Confidence 9999999999999999999999999864 899999999999999988763
No 4
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-38 Score=400.24 Aligned_cols=258 Identities=32% Similarity=0.455 Sum_probs=216.1
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHh-CCCCceecccccCCC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY-LGHPKHLLSMQYRMH 80 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~-~g~p~~~L~~QYRmh 80 (1987)
.+||++|||||||+..|-++.||.+. +++||||||.||||.|.+..++..|++.|||+||.. ....+..|+.||||.
T Consensus 795 R~FD~cIiDEASQI~lP~~LgPL~~s--~kFVLVGDh~QLpPLV~s~ear~~Gl~~SLFkrL~e~hpeaV~~Lt~QYRMn 872 (1100)
T KOG1805|consen 795 RQFDYCIIDEASQILLPLCLGPLSFS--NKFVLVGDHYQLPPLVRSSEARQEGLSESLFKRLSEKHPEAVSSLTLQYRMN 872 (1100)
T ss_pred cccCEEEEccccccccchhhhhhhhc--ceEEEecccccCCccccchhhhhcCcchHHHHHHhhhCchHHHhHHHHHhhc
Confidence 46999999999999999999999754 899999999999999999999999999999999987 344578899999999
Q ss_pred ccccccccccccCCccccCcccccccc----------------ccc---cCCCCCCCCeEEEEeCCC--cccc-cccccC
Q 000162 81 PSISFFPNSYFYENKIRDAPTVRKRSY----------------EKR---FLPGPMYGPYSFINVFGG--REEF-IEHSCR 138 (1987)
Q Consensus 81 P~Is~f~s~~FY~g~L~~~~~v~~~~~----------------~~~---~l~~p~~~pl~fidV~~g--~E~~-~~~S~~ 138 (1987)
.+|..++|.+||+|+|.++........ ... .+-.| ..+++|+++..- -+.. ..+.-.
T Consensus 873 ~~I~~LSN~L~Yg~~L~Cgs~eVs~~~~~~~~~~~~~~~~~s~s~~wl~~v~~p-~~~v~f~~~D~~~~ie~~~e~~~i~ 951 (1100)
T KOG1805|consen 873 REIMRLSNKLIYGNRLKCGSKEVSRASELDRKGALSVYMDDSSSDHWLQAVLEP-TRDVCFVNTDTCSTIESQGEKGGIT 951 (1100)
T ss_pred chHHhhhhhheECCeeeecChhhhhhhccccchhhhhhcccccchHHHHHhhcC-CccceEEecCcccchhhhccccCcC
Confidence 999999999999999998876544210 001 11233 346778776321 1221 344456
Q ss_pred CHHHHHHHHHHHHHHHHHhhcccCCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccCEEEEEeccc
Q 000162 139 NMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRS 218 (1987)
Q Consensus 139 N~~Ea~~V~~lV~~L~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrs 218 (1987)
|..||..+.+++..++..|. ++.+|||||||++|+.+|+..+... .++|.|||+|||+++|+||+|+||+
T Consensus 952 N~~EA~li~~~~~~fv~sGv---~~~dIGIis~YraQv~Li~~~l~~~-------~lEinTVD~yQGRDKd~IivSfvrs 1021 (1100)
T KOG1805|consen 952 NHGEAKLISELVEDFVKSGV---KPSDIGIISPYRAQVELIRKILSSA-------VLEINTVDRYQGRDKDCIIVSFVRS 1021 (1100)
T ss_pred chhHHHHHHHHHHHHHHcCC---CHHHeeeeehHHHHHHHHHhhcccc-------ceeeeehhhhcCCCCCEEEEEEEec
Confidence 99999999999999999876 6779999999999999999998653 2899999999999999999999999
Q ss_pred CCCCccc-CCCCCCceEEecccccccEEEEcchhhhccCchHHHHHHHHHHhcCce
Q 000162 219 NNTGSIG-FASTPQRINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCF 273 (1987)
Q Consensus 219 n~~~~iG-FL~d~nRLNVALTRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~ 273 (1987)
+.....| .+.|.+|+|||+||||+.||+||+..+|... +.+++|+++...+..+
T Consensus 1022 n~~~~~~eLLkD~rRlNVAlTRAK~KLIlvGs~s~l~~~-~~~~~l~~~l~~~~~l 1076 (1100)
T KOG1805|consen 1022 NKKSKVGELLKDWRRLNVALTRAKKKLILVGSKSTLESY-PPFRQLLKLLENRIEL 1076 (1100)
T ss_pred CCcccHHHHHHhhHHHHHHHHhhhceEEEEecccccccC-chHHHHHhhhhhhhhH
Confidence 9876665 6789999999999999999999999999876 7899999988665543
No 5
>KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=401.15 Aligned_cols=281 Identities=47% Similarity=0.697 Sum_probs=261.6
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCCCc
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMHP 81 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmhP 81 (1987)
.+||.||||||+|..||..++||.+.+..+.+++||+.|||++|.+..+....+.+|+|+|+...+.+...|++||||||
T Consensus 535 ~p~~~vviDeaaq~~e~~s~~PL~l~g~~~~~lvgd~~qlP~~V~s~~~~~~k~~~slf~rl~l~~~~~~~L~vqyrmhp 614 (827)
T KOG1801|consen 535 PPLDTVVIDEAAQKYEPSSLEPLQLAGYQHCILVGDLAQLPATVHSSPAGCFKYMTSLFERLELAGHKTLLLTVQYRMHP 614 (827)
T ss_pred CCceEEEEehhhhhcCccchhhhhhcCCceEEEecccccCChhhccchhccccchhhHHHHHHHccCccceecceeecCC
Confidence 57999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccc-cccccCCHHHHHHHHHHHHHHHHHhhcc
Q 000162 82 SISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEF-IEHSCRNMVEVSVVMKILRNLYKAWVES 160 (1987)
Q Consensus 82 ~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~-~~~S~~N~~Ea~~V~~lV~~L~~~~~~~ 160 (1987)
+|+.||+..||++.|.+.+.+....+...++.+++++|+.|+++..|+|.. .+.|..|..|+.++..++..+++.....
T Consensus 615 ~Is~fP~~~fy~~~i~d~~~vs~~~~~~~~~~~~~~~~y~f~~v~~g~e~~~~~~s~~n~~E~~~~~~~~~~l~~~~~~~ 694 (827)
T KOG1801|consen 615 EISRFPSKEFYGGRLKDVNNVSESNTVKLWHSGETFGPYPFFNVHYGKERAGGGKSPVNNEEVRFVGAIYSRLYKVSQPQ 694 (827)
T ss_pred ccccCccccccccccccCcccchhhccccCcCCCccCceEEEEecccccccCCCCCcccHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999988888899999999999999998898887 4589999999999999999999887655
Q ss_pred cC-CccEEEEccCHHHHHHHHHHhhhhhhcccC--ccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEec
Q 000162 161 KE-KLSIGIVSPYSAQVIAIQEKLGSKYEKIAG--FAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237 (1987)
Q Consensus 161 ~~-~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~--~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVAL 237 (1987)
.. +..||||+||+.|+..+++.....+..... ..+.+.|||+|||.|.|++|+|+||++..+++||+.|.+|+|||+
T Consensus 695 ~~~~~~vGvisPY~~q~~~l~~~~~~~~~~~~~~~~~i~v~tvD~fqg~e~diii~s~vrs~~~g~igf~~~~~RlnvAL 774 (827)
T KOG1801|consen 695 VSVPGSVGVISPYKNQVKALRERFPEAYSLLLANNVDLSVSTVDSFQGGERDIIIISTVRSIDEGSIGFECNLRRLNVAL 774 (827)
T ss_pred CCCCcceeeECchHHHHHHHHHHHHHHhcchhcccceeEEEecccccCCCCceeEEEEEEecccCccchhhhHHHHHHhh
Confidence 55 779999999999999999999887664333 579999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccCcchHH
Q 000162 238 TRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNIDEDKDL 282 (1987)
Q Consensus 238 TRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~~d~~l 282 (1987)
||||.++|++||...|...++.|..++.+++.++|+.+...+..+
T Consensus 775 tra~~~l~v~Gne~~L~~~~~~w~~li~da~~r~~~~~~~~~~~~ 819 (827)
T KOG1801|consen 775 TRARTCFWLVGNEITLAPSCSIWASLILDAKGRGCFMDRAADVND 819 (827)
T ss_pred cccccceEEecCccccccccchhhhhcchhcccccccccccccch
Confidence 999999999999999999988999999999999999998765543
No 6
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=100.00 E-value=6.4e-37 Score=374.14 Aligned_cols=299 Identities=28% Similarity=0.404 Sum_probs=239.8
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCccccc-ccccccccCccHHHHHHhCCCCceecccccCCCc
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVES-SVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMHP 81 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s-~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmhP 81 (1987)
.+.+|||+||+.+.|++.+..+ .+...|+||||||+||+|.... ..+...++..|+||||+..|.|-.+|+.||||+|
T Consensus 720 ~pkivivEEAAEVlEahiIaal-~p~~EhviLIGDHKQLrP~~~vy~L~q~fnL~iSlFERLVe~glpfsrLn~QhRM~p 798 (1025)
T KOG1807|consen 720 QPKIVIVEEAAEVLEAHIIAAL-TPHTEHVILIGDHKQLRPFSGVYKLPQIFNLSISLFERLVEAGLPFSRLNLQHRMRP 798 (1025)
T ss_pred CCcEEEEhhHhHHhhcchhhhh-cccceeEEEecchhhcCCCcchhhHhHhcchhHHHHHHHHHcCCChhhhhHHhhhch
Confidence 4689999999999999976655 5667999999999999997543 3445578889999999999999999999999999
Q ss_pred cccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhhccc
Q 000162 82 SISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESK 161 (1987)
Q Consensus 82 ~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~~~~ 161 (1987)
.|+++....||++ |.+++++....- .++ |...+.|+.+....+..++.|+.|..||.++++++.+|+.+.+
T Consensus 799 ~IsrllvpsiYdd-l~d~esvk~yed----I~g-ms~nlfFv~hnspee~~de~S~~NlhEa~mlv~l~kyli~q~y--- 869 (1025)
T KOG1807|consen 799 CISRLLVPSIYDD-LLDSESVKEYED----IRG-MSKNLFFVQHNSPEECMDEMSIGNLHEAGMLVKLTKYLIQQQY--- 869 (1025)
T ss_pred HHHHHhhHHHhhh-hhcchhhccccc----ccc-ccceeeEEecCCcccCcchhhhhhHHHHHHHHHHHHHHHhcCC---
Confidence 9999999999975 677777764321 122 2345677776444455578999999999999999999999765
Q ss_pred CCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEeccccc
Q 000162 162 EKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRAR 241 (1987)
Q Consensus 162 ~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVALTRAK 241 (1987)
.+.+|.|+|||.+|...|++.+.+.+.. .|.|.|||+|||.|+|||++|+||+|..+.+|||..+||+|||+||||
T Consensus 870 ~psdIviLttY~gQk~ci~rllp~~~~s----tv~VatVDsfQGeEndIVLlSLVRsn~~griGFL~~anRvCVALSRAr 945 (1025)
T KOG1807|consen 870 KPSDIVILTTYNGQKECIKRLLPQNYRS----TVQVATVDSFQGEENDIVLLSLVRSNISGRIGFLRQANRVCVALSRAR 945 (1025)
T ss_pred CccceEEEeechhHHHHHHHHhHHHhcC----cceEEEeccccCccccEEEEEEEeccCCceeeeeeccchhhhhhhhhh
Confidence 6679999999999999999999876543 499999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcchhhhccCchHHHHHHHHHHhcCceeccCcchHHHHHHHHHHHhhhhhhhccCCCCccccccccccccChhHH
Q 000162 242 HCLWILGSERTLNHSESVWESLLDDAKARQCFFNIDEDKDLAKAILEVKKELDELDELLNPGSILFRSERWKVNFSDNFL 321 (1987)
Q Consensus 242 ~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~~d~~l~~~i~~~~~e~d~l~~ll~~~s~~f~s~~w~~~~s~~f~ 321 (1987)
++++||||...+..+.++|+++++-.+++..+=.+-.- ++ ..........++.+.+-++|.-.+.-.+++.
T Consensus 946 ~glyiiGN~q~la~~~pLWnkivntLrenn~Ig~~lpl--~c-------~~h~~~~t~v~k~~~fqk~peggc~~pce~~ 1016 (1025)
T KOG1807|consen 946 WGLYIIGNVQILADTPPLWNKIVNTLRENNAIGEALPL--IC-------STHKDGTTYVNKSKQFQKNPEGGCVDPCELL 1016 (1025)
T ss_pred cceEEecceeecccCchhHHHHHHHHHhcccccccccc--ce-------eecCCceEEEchHHhhccCCCCCccchhHHh
Confidence 99999999999999889999999998886533111000 00 0111122344555566667777766666666
Q ss_pred Hhh
Q 000162 322 RSF 324 (1987)
Q Consensus 322 ~~~ 324 (1987)
.-+
T Consensus 1017 ~~c 1019 (1025)
T KOG1807|consen 1017 DVC 1019 (1025)
T ss_pred hhh
Confidence 554
No 7
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-34 Score=383.45 Aligned_cols=264 Identities=38% Similarity=0.566 Sum_probs=227.6
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCC-CceecccccCCCc
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGH-PKHLLSMQYRMHP 81 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~-p~~~L~~QYRmhP 81 (1987)
.||+||||||+|++++.+++|+.. ++++|++|||+||||++........++..|+|+++...+. ...+|+.||||||
T Consensus 488 ~fd~viiDEAsQ~~~~~~~~~l~~--~~~~il~GD~kQL~p~~~~~~~~~~~~~~slf~~~~~~~~~~~~~L~~qyRm~~ 565 (767)
T COG1112 488 EFDYVIIDEASQATEPSALIALSR--AKKVILVGDHKQLPPTVFFKESSPEGLSASLFERLIDNGPEVVYLLRVQYRMHP 565 (767)
T ss_pred ccCEEEEcchhcccchhHHHhHhh--cCeEEEecCCccCCCeecchhhcccchhHhHHHHHHHhCCchheeeeeecccCh
Confidence 499999999999999999999965 7999999999999999876544567889999999999775 8899999999999
Q ss_pred cccccccccccCCccccCccccccccccccCCCC-CCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhhcc
Q 000162 82 SISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGP-MYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVES 160 (1987)
Q Consensus 82 ~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p-~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~~~ 160 (1987)
.|+.|+|..||++.+..++............+.+ ...|+.++++....+.....+..|..|+..+..++..+...+.
T Consensus 566 ~i~~f~s~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~-- 643 (767)
T COG1112 566 DIIAFSSKVFYNGRLEVHTSFLAFTLLDGEIPEVVISNPLEFYDTLGAEEFFESKSKLNELEAEIVKVIVDELLKDGL-- 643 (767)
T ss_pred hhhhCchhhccCCccccCcchhhhhhhccccccccccCceEEEEecCcccccCccceecHHHHHHHHHHHHHHHHcCC--
Confidence 9999999999999999887765543322212221 1358889998554443578899999999999999999998765
Q ss_pred cCCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccCEEEEEecccCCC-CcccCCCCCCceEEeccc
Q 000162 161 KEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNT-GSIGFASTPQRINVALTR 239 (1987)
Q Consensus 161 ~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~-~~iGFL~d~nRLNVALTR 239 (1987)
...+|||||||++|+..|++.+.... ..+.|.|||+|||+|+|+||+|+|+++.. +.+||+.|+||+|||+||
T Consensus 644 -~~~~igvis~y~~q~~~i~~~~~~~~-----~~v~v~tvd~fQG~EkdvIi~S~v~s~~~~~~i~~l~d~rRLNVAlTR 717 (767)
T COG1112 644 -EENDIGVISPYRAQVSLIRRLLNEAG-----KGVEVGTVDGFQGREKDVIILSLVRSNDDKGEIGFLGDPRRLNVALTR 717 (767)
T ss_pred -cHHHcceecccHHHHHHHHHHHHhcC-----CceEEeeccccCCccCcEEEEEEEeecCCCccccccCchhhhhhhhhc
Confidence 34459999999999999999987643 46899999999999999999999999988 699999999999999999
Q ss_pred ccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccC
Q 000162 240 ARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNID 277 (1987)
Q Consensus 240 AK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~ 277 (1987)
||++|||||+...+... +.|+.++.+++.++++....
T Consensus 718 Ak~~livvg~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 754 (767)
T COG1112 718 AKRKLIVVGSSSTLESD-PLYKRLINDLKRKGLLAELN 754 (767)
T ss_pred ccceEEEEcChhHhhhc-hhHHHHHHHHHhcCcEeecc
Confidence 99999999999988775 89999999999999987754
No 8
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=99.98 E-value=1.2e-33 Score=316.59 Aligned_cols=196 Identities=39% Similarity=0.608 Sum_probs=138.8
Q ss_pred cCccHHHHHHhCC-CCceecccccCCCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCccccc
Q 000162 55 FGRSLFERLSYLG-HPKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFI 133 (1987)
Q Consensus 55 l~~SLFeRL~~~g-~p~~~L~~QYRmhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~ 133 (1987)
+++|||+|+...+ .+.++|++||||||+|++|+|..||+|.|.+.++.............+...|+.|+++.+..+...
T Consensus 1 ~~~Slferl~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~ 80 (200)
T PF13087_consen 1 LDRSLFERLIKNGSVPVVMLTEQYRMHPEIADFSSRLFYNGKLVSGPSVKNRPAPLLKLLPSPQNPIVFIDVSGSESSSE 80 (200)
T ss_dssp TTS-HHHHHHHCT----EE--EE-SS-HHHHHHHHHHHSTT--EESS-TCCCS-T-----SSTTSSEEEEE----EEEET
T ss_pred CCccHHHHHHHcCCCCceecccccCCCHHHHHHHHHHHhchhcccCcccccccccccccccCCCCceEEEeccccccccc
Confidence 4789999999998 999999999999999999999999999999888766554431111222356899999954444333
Q ss_pred c--cccCCHHHHHHHHHHHHHHHHHhhcccCCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccCEE
Q 000162 134 E--HSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDII 211 (1987)
Q Consensus 134 ~--~S~~N~~Ea~~V~~lV~~L~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~DVV 211 (1987)
. +|+.|..||+.+++++..|+..+.....+.+|||||||++|+.+|++.+...........+.|+|||+|||+|+|+|
T Consensus 81 ~~~~s~~N~~Ea~~i~~~~~~l~~~~~~~~~~~~I~Iitpy~~Q~~~i~~~l~~~~~~~~~~~~~v~Tvd~~QG~E~diV 160 (200)
T PF13087_consen 81 SSQTSYYNPDEAEFIVELVRDLLDNGPDSNKPSSIGIITPYRAQVALIRKALRSRYPSSPIKDIKVSTVDSFQGQEADIV 160 (200)
T ss_dssp TC-SCEEEHHHHHHHHHHHHHHHHTT--G---GGEEEEES-HHHHHHHHHHHHHCSTCHHHHCSEEEEHHHHTT--EEEE
T ss_pred ccccceechhhHHHHHHHHhhhhhccccccccCCceEEcCchHHHHHHHHHHhhhccccccceEEEecHHHhccccceEE
Confidence 3 89999999999999999999876533235799999999999999999998654332222389999999999999999
Q ss_pred EEEecccCCCCcccCCCCCCceEEecccccccEEEEcch
Q 000162 212 IISTVRSNNTGSIGFASTPQRINVALTRARHCLWILGSE 250 (1987)
Q Consensus 212 IlS~Vrsn~~~~iGFL~d~nRLNVALTRAK~~LiIVGn~ 250 (1987)
|||+|++++...+||+.+++|+|||+||||.++|||||+
T Consensus 161 i~s~v~~~~~~~~~f~~~~~r~nVA~SRAk~~liiig~~ 199 (200)
T PF13087_consen 161 IVSLVRTNSSSNIGFLNDPNRLNVALSRAKSGLIIIGNP 199 (200)
T ss_dssp EEEE---STTS-SGGGC-HHHHHHHHTSEEEEEEEEE-H
T ss_pred EEEeccCCccccccccCCcCeeeeeHHHHhcCEEEEecC
Confidence 999999987778999999999999999999999999996
No 9
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.91 E-value=4.4e-25 Score=289.84 Aligned_cols=102 Identities=19% Similarity=0.163 Sum_probs=74.6
Q ss_pred cccchhhhHhHHHhhcccC-CChhhHhhhhhhccccccccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHH--HHH
Q 000162 472 SYVENSNVTDSLLLMKFYP-LSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTIL--TMK 545 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~~-~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVI--Iik 545 (1987)
|.+|..+++.+.++..... +.. .+....+...|...++.|+++|++||+. ++.++|||||||||||++ |++
T Consensus 284 ~~~E~~ia~~l~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~ 360 (720)
T TIGR01448 284 FRAEKQIASHIRRLLATSPAIGA---INDQEHIWEVEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIE 360 (720)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHH
Confidence 6699999999999875432 222 2233334445566789999999999999 889999999999999999 888
Q ss_pred HHhhhh------------hhhhhhccccCCccchhHHhhhcccc
Q 000162 546 LFQNEK------------HHRMAKEQFDGVNNSLTLHTSWEVEA 577 (1987)
Q Consensus 546 l~~~~~------------raa~a~~~l~~~~~AaTIHrLLe~~~ 577 (1987)
+++..+ +++.++.+.++.+ +.|||++|++..
T Consensus 361 ~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~-a~Tih~lL~~~~ 403 (720)
T TIGR01448 361 LAEELGGLLPVGLAAPTGRAAKRLGEVTGLT-ASTIHRLLGYGP 403 (720)
T ss_pred HHHHcCCCceEEEEeCchHHHHHHHHhcCCc-cccHHHHhhccC
Confidence 886432 2334444444544 569999998753
No 10
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.1e-25 Score=283.59 Aligned_cols=263 Identities=29% Similarity=0.318 Sum_probs=212.6
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCCC-cceEEEEecCCCCCcccccccccccccCccHHHHHHhC------------CC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLPC-IQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL------------GH 68 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~~-~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~------------g~ 68 (1987)
..|..+++|||++.+||+.++|+...+ ..++||.|||+||+|++.+..+...|++.|||+|+... ..
T Consensus 441 ~~f~hil~DeAg~stEpe~lv~i~~~~~~~~vvLsgdh~Qlgpv~~s~~A~~~gl~rsLler~l~r~~~~~~~~g~~~~l 520 (775)
T KOG1804|consen 441 GHFRHILVDEAGVSTEPELLVPGKQFRQPFQVVLSGDHTQLGPVSKSARAEELGLDRSLLERALTRAQSLVAVVGDYNAL 520 (775)
T ss_pred cceeeeeecccccccCcccccccccccceeEEEEccCcccccccccchhhhhhcccHHHHHHHHHHHhhccccCCCcccc
Confidence 467889999999999999999997443 34899999999999999999999999999999999763 12
Q ss_pred CceecccccCCCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccc--cccccCCHHHHHHH
Q 000162 69 PKHLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEF--IEHSCRNMVEVSVV 146 (1987)
Q Consensus 69 p~~~L~~QYRmhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~--~~~S~~N~~Ea~~V 146 (1987)
-.+.|-.+||+||.|....|+.||.+.|..............|. ..+.|.-+ .|..+. ...|+.|..||..|
T Consensus 521 ~~t~l~rnyrshp~il~l~~~l~y~~eL~~~~~~~~v~~~~~w~-----~liif~g~-~G~~~r~~~s~S~~n~~Ea~~V 594 (775)
T KOG1804|consen 521 CSTGLCRNYRSHPIILCLENRLYYLGELTAEASEVDVRGLELWS-----GLILFYGA-PGFTERAGNSPSWLNLEEAAVV 594 (775)
T ss_pred cchhhHHHHhhhhHhhhcccccccccceeeeccHHHHHHHHhcc-----cceecccc-ccccccccCChhhccHHHHHHH
Confidence 24679999999999999999999999998655444322221111 12455555 454444 55689999999999
Q ss_pred HHHHHHHHHHhhcccCCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccCEEEEEecccCCC-----
Q 000162 147 MKILRNLYKAWVESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNT----- 221 (1987)
Q Consensus 147 ~~lV~~L~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~----- 221 (1987)
..++..+..... ....+|||||||++|+..|+..+... +...+.|++|..|||+|+.|||+|+||+...
T Consensus 595 ~~~~k~l~~~~~--~~~~DIgvitpy~aq~~~i~~~l~~~----~~~~~~vgsVe~fqGqE~~viiiStVrS~~~~~~~~ 668 (775)
T KOG1804|consen 595 VRMTKALPLGEV--AQPQDIGVITPYTAQVSEIRKALRRL----GVPGVKVGSVEEFQGQEPWVILGSTVRSFALPLLDD 668 (775)
T ss_pred HHHHhccCCCCc--cccccceeeCcHHHHHHHHHHHhccc----CCCCCcccceeeeccccceeeEeecccccCCCcccc
Confidence 888887765433 33449999999999999999999753 3346889999999999999999999999764
Q ss_pred -CcccCCCCCCceEEecccccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccC
Q 000162 222 -GSIGFASTPQRINVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNID 277 (1987)
Q Consensus 222 -~~iGFL~d~nRLNVALTRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~ 277 (1987)
...+|+.++.|+|||+|||+.-++++|+...+.. ++.|+.++..+..++.+...+
T Consensus 669 ~~~~~fls~pk~l~v~V~rp~~l~i~~~~~h~~~~-~~~~~~~l~~~~~n~~y~~c~ 724 (775)
T KOG1804|consen 669 RYFGLFLSRPKRLLVAVGRPRALLINLGNPHLLGG-DPPWGLLLLLRVENGRYPGCD 724 (775)
T ss_pred cccceeecCcccceeeccCccccccccCCcccccC-CCChhhheeeeecCCcccCCC
Confidence 1223899999999999999999999999998876 589999999998887666654
No 11
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.86 E-value=5.2e-22 Score=255.04 Aligned_cols=101 Identities=18% Similarity=0.045 Sum_probs=65.7
Q ss_pred cccchhhhHhHHHhhcccCCChhhHhhhhhhccccccccCcc--cCHHHHHhhcc---CCcEEEEcCCCCChhHHH--HH
Q 000162 472 SYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFE--VTDEQLEMILF---PRSTFILGRSGTGKTTIL--TM 544 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~~~s~~~~~~l~~~~~~~e~d~~I~--l~~eQk~AI~~---~~~~iItGgPGTGKTTVI--Ii 544 (1987)
|..|..++..+.++......++ ..+...++.. ++.. ..+.|++|+.. ++.+||||||||||||++ ++
T Consensus 115 ~~~E~~iA~~l~~~~~~~~~~~---~~~~~~l~~l---f~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll 188 (615)
T PRK10875 115 WQNERTVARFFNEVNHAIEVDE---ALLRQTLDAL---FGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLL 188 (615)
T ss_pred HHHHHHHHHHHHHhccCCCCCh---HHHHHHHHHh---cCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4499999999988764333444 2233333321 1223 34899999988 889999999999999999 66
Q ss_pred HHHhhh--------------hhhhhhhccccCC----------------ccchhHHhhhccccc
Q 000162 545 KLFQNE--------------KHHRMAKEQFDGV----------------NNSLTLHTSWEVEAE 578 (1987)
Q Consensus 545 kl~~~~--------------~raa~a~~~l~~~----------------~~AaTIHrLLe~~~~ 578 (1987)
..+.+. ++++.++.+.++. ..+.||||+|++...
T Consensus 189 ~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg~~~~ 252 (615)
T PRK10875 189 AALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLGAQPG 252 (615)
T ss_pred HHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhCcCCC
Confidence 555221 1344555443321 236799999998653
No 12
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.85 E-value=3.5e-20 Score=224.28 Aligned_cols=287 Identities=15% Similarity=0.175 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhc-------CChHHHHHHHHHHHHHHHHcCCHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRS-------SNPLEANVILREAANIFEAIGKAD 915 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s-------~~~~ea~~~y~eAAelYe~~G~~d 915 (1987)
+..-+.|+.+++..+++.|..||.+ ||.... |..+.+-|..... ..-.+..++++.|.++|.+++..-
T Consensus 662 elydkagdlfeki~d~dkale~fkk-gdaf~k----aielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKK-GDAFGK----AIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHc-ccHHHH----HHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 4556677777888888888888885 443321 1112211111111 122457788999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHH
Q 000162 916 SAAKCFYDLGEYERAGKIYEERCG----KPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 916 kAAk~y~kaGdyekA~eLy~e~~~----~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~q 991 (1987)
+|++..+.+++|.+|+-+..++-+ ...|..+|++|...|+|+.|.++|.+++.+..||.||.+++.|+.|.++.+.
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHH
Confidence 999999999999999999886433 3458899999999999999999999999999999999999999999999976
Q ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHH---------
Q 000162 992 WKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVL--------- 1062 (1987)
Q Consensus 992 y~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiel--------- 1062 (1987)
......... .|+.+ |.-..++|.+.+|-+++......+.|.+++.++++.|+.+++
T Consensus 817 ~~~~e~t~~--------------~yiak-aedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 817 CHGPEATIS--------------LYIAK-AEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred hcCchhHHH--------------HHHHh-HHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhh
Confidence 544221111 12222 223344444555555555555555555555555555554443
Q ss_pred ----------HHHhCCHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHH------HHHHhhhcCCCCCCCCchhhhh
Q 000162 1063 ----------EEEAGNFMDAANIARLTGDILLTADLLQKAGNFKEACNLTLN------YVLSNSLWSPGSKGWPLKQFTE 1126 (1987)
Q Consensus 1063 ----------l~kaG~f~EA~~iAkq~Gd~l~Aae~L~kAg~fdeA~rL~l~------~~~~~~LW~~~~~g~p~k~f~~ 1126 (1987)
+...|+..+|...+.++|++..+++||...+.|++|.|++.- ++.|..||+++-+|.++++++.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavklln 961 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLN 961 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHH
Confidence 556899999999999999999999999999999999999875 4999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccchhhh
Q 000162 1127 KKELFEKAKSLAKSNSNQFYEFV 1149 (1987)
Q Consensus 1127 k~~ll~~a~~~a~~~~~~~~~~~ 1149 (1987)
|-+||+.|++||.++|+|.|+|-
T Consensus 962 k~gll~~~id~a~d~~afd~afd 984 (1636)
T KOG3616|consen 962 KHGLLEAAIDFAADNCAFDFAFD 984 (1636)
T ss_pred hhhhHHHHhhhhhcccchhhHHH
Confidence 99999999999999999998873
No 13
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.85 E-value=1.4e-21 Score=250.80 Aligned_cols=70 Identities=19% Similarity=0.078 Sum_probs=47.1
Q ss_pred cccchhhhHhHHHhhcccCCChhhHhhhhhhccccccccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHH--HHHH
Q 000162 472 SYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTIL--TMKL 546 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~~~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVI--Iikl 546 (1987)
|..|..++..+.++......... ...+...+...+ + .+.|+.||.. ++.++|||||||||||++ |+.+
T Consensus 111 ~~~E~~ia~~l~~~~~~~~~~~~-~~~l~~~~~~~~-----~-~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 111 WREEEKLAAKLRTLLEARKRTAP-SAILENLFPLLN-----E-QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred HHHHHHHHHHHHHHhccCCCCcc-hHHHHHhhcccc-----c-cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 44899999999987754321110 122222222211 1 2799999998 899999999999999999 6666
Q ss_pred Hh
Q 000162 547 FQ 548 (1987)
Q Consensus 547 ~~ 548 (1987)
+.
T Consensus 184 l~ 185 (586)
T TIGR01447 184 LV 185 (586)
T ss_pred HH
Confidence 53
No 14
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=210.40 Aligned_cols=309 Identities=17% Similarity=0.211 Sum_probs=238.2
Q ss_pred ccCCcHHHHHHhhhhhHHhccChHHHHHhhh-cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhH-Hh
Q 000162 808 EFSKPMFDYWKKRLLVQVRQLDDSLAQAMQV-ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLK-AA 885 (1987)
Q Consensus 808 ~~s~Pm~~ywek~~Lvev~~~de~la~~la~-~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~-~a 885 (1987)
....+|++|.+.. ++..+..+++ +.+..||+.+|+.++...+|+.|.++|.|..|..+.++.-..... ..
T Consensus 558 p~~~~m~q~Ieag--------~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 558 PQSAPMYQYIERG--------LFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred cccccchhhhhcc--------chhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3578999999887 4444566666 899999999999999999999999999999996654433222211 11
Q ss_pred h---hhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC---hhHHHHHHHHHHHcCCHHHH
Q 000162 886 S---DHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG---KPELEKAGECFFLAGQYKHA 959 (1987)
Q Consensus 886 A---~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~---~~ll~~aAe~fE~agqy~kA 959 (1987)
+ +.+...+...+++.|.|||++|.++|.-.+|.+||.++++|+-|.+......+ +.++++-|+|....++...|
T Consensus 630 ge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaA 709 (1081)
T KOG1538|consen 630 GETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAA 709 (1081)
T ss_pred CCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHH
Confidence 1 12333444568899999999999999999999999999999999998776443 46799999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 960 AEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 960 AeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
||+...+|+..|||+++...++.|.++.|..+.. ..+.+-++.|+.++.++..+-
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld-----------------~~ere~l~~~a~ylk~l~~~g-------- 764 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD-----------------KAEREPLLLCATYLKKLDSPG-------- 764 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc-----------------hhhhhHHHHHHHHHhhccccc--------
Confidence 9999999999999999999999999999884332 333445667788887765443
Q ss_pred hccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHH-----HHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 000162 1040 FHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLTGDIL-----LTADLLQKAGNFKEACNLTLNYVLSNSLWSP 1114 (1987)
Q Consensus 1040 ~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l-----~Aae~L~kAg~fdeA~rL~l~~~~~~~LW~~ 1114 (1987)
.|++.+++.|++...++++++.|+|.|||++|..|+++. ..|.+|+..++|+||.+.+.+-
T Consensus 765 -----LAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA--------- 830 (1081)
T KOG1538|consen 765 -----LAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA--------- 830 (1081)
T ss_pred -----hHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh---------
Confidence 566777889999999999999999999999999997655 4489999999999999985543
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHhhhccccchhhhh--hhhcccccCcchHHHH
Q 000162 1115 GSKGWPLKQFTEKKELFEKAKSLAKSNSNQFYEFVC--TEASILSNDESDLFIM 1166 (1987)
Q Consensus 1115 ~~~g~p~k~f~~k~~ll~~a~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 1166 (1987)
|.---.---.|||-..|+...+...+.+|++.- -=+++.+-+.+-||-|
T Consensus 831 ---Gr~~EA~~vLeQLtnnav~E~Rf~DA~y~yw~L~~q~Ld~~~~k~~~lftl 881 (1081)
T KOG1538|consen 831 ---GRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLSMQCLDIAQSKVKILFTL 881 (1081)
T ss_pred ---cchHHHHHHHHHhhhhhhhhhhhccchhHHHHhhhhhhhhhhhhhhheeeh
Confidence 111111122478889999999999998887631 1134444444444443
No 15
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1e-17 Score=206.30 Aligned_cols=258 Identities=18% Similarity=0.216 Sum_probs=202.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhccc--------chhHHHHHhhhHHhhhhhhcCChHHHHHHHH
Q 000162 831 SLAQAMQVASSPEEWKSRGIKLFYENNYEMATICFEKAKDT--------YWEGRSKATGLKAASDHIRSSNPLEANVILR 902 (1987)
Q Consensus 831 ~la~~la~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~--------~la~la~A~~l~~aA~~l~s~~~~ea~~~y~ 902 (1987)
.+..-++...++..|+++|++++..|+.+.|+..|..|.|- ...+..+|..++++.. + .+.++
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esg-----d----~AAcY 971 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESG-----D----KAACY 971 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcc-----c----HHHHH
Confidence 44555777899999999999999999999999999999993 2223333333332211 1 35688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhc------------ChhHHHHHHHHHHHcC-CHHHHHHHHHhcCCH
Q 000162 903 EAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERC------------GKPELEKAGECFFLAG-QYKHAAEVYARGNFF 969 (1987)
Q Consensus 903 eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~------------~~~ll~~aAe~fE~ag-qy~kAAeLYeKaGd~ 969 (1987)
..|++||.-|++.+|+++|.++..|..|++|+++.. +...+..+|.|||+.| ++.+|+.+|.|||++
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMI 1051 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcch
Confidence 999999999999999999999999999999998722 1345778999999998 999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHH
Q 000162 970 SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNF 1049 (1987)
Q Consensus 970 ~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~f 1049 (1987)
.+|+++..+.++|. |+++| .+...+.+. .+.+..|+.+|...
T Consensus 1052 ~kALelAF~tqQf~-aL~lI---a~DLd~~sD------------p~ll~RcadFF~~~---------------------- 1093 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFS-ALDLI---AKDLDAGSD------------PKLLRRCADFFENN---------------------- 1093 (1416)
T ss_pred HHHHHHHHhhcccH-HHHHH---HHhcCCCCC------------HHHHHHHHHHHHhH----------------------
Confidence 99999999999998 66766 232222111 13455666666654
Q ss_pred HhhcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHH--HHHHHHc--CCHHHHHHHHHHHHHHhhhcCCCCCCCCchhhh
Q 000162 1050 LKSKSCFDELLVLEEEAGNFMDAANIARLTGDILLT--ADLLQKA--GNFKEACNLTLNYVLSNSLWSPGSKGWPLKQFT 1125 (1987)
Q Consensus 1050 L~k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~A--ae~L~kA--g~fdeA~rL~l~~~~~~~LW~~~~~g~p~k~f~ 1125 (1987)
..|+.|+.+++.+..|.+|..+++..|....+ ++++..+ +++.++.|.=+.-.+++.+.+||+||-++||||
T Consensus 1094 ----~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1094 ----QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 45666777888999999999999998765544 8888554 899999999899999999999999999999999
Q ss_pred hHHHHHHHHHHHhh
Q 000162 1126 EKKELFEKAKSLAK 1139 (1987)
Q Consensus 1126 ~k~~ll~~a~~~a~ 1139 (1987)
|--.=|-.-+..-|
T Consensus 1170 QAGdKl~AMraLLK 1183 (1416)
T KOG3617|consen 1170 QAGDKLSAMRALLK 1183 (1416)
T ss_pred hhhhHHHHHHHHHh
Confidence 97766654443333
No 16
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=99.77 E-value=6.9e-20 Score=230.88 Aligned_cols=244 Identities=28% Similarity=0.367 Sum_probs=197.0
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCC-------cceEEEEecCCCCCcccc-cccccccccCccHHHHHHhCCCCceecc
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPC-------IQHAILVGDEVQLPAMVE-SSVSGEAYFGRSLFERLSYLGHPKHLLS 74 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~-------~krlILVGD~kQLpPiV~-s~~~~~~gl~~SLFeRL~~~g~p~~~L~ 74 (1987)
.+|=+++.|++|++|.+..+|+-+.+ .+++|++|||.|+||++. ..........+|+|.|+.+.++|.+.|+
T Consensus 991 ~ydnl~mEesaqile~etfiplLlq~p~dg~~rlkr~iligdhhqlPPv~~n~afqkysnm~qslf~r~vRl~ip~i~ln 1070 (1320)
T KOG1806|consen 991 KYDNLLMEESAQILEIETFIPLLLQNPQDGHNRLKRWILIGDHHQLPPVVKNQAFQKYSNMEQSLFTRLVRLGVPIIDLN 1070 (1320)
T ss_pred eechhhhhhccCCcccccccHHHhcCCcchhhHhhheeecccccccCCcccchHHHHHhcchhhhhhcceecccceecch
Confidence 46778999999999999999985432 479999999999999984 3455566778999999999999999999
Q ss_pred cccCCCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCC----cccccccccCCHHHHHHHHHHH
Q 000162 75 MQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGG----REEFIEHSCRNMVEVSVVMKIL 150 (1987)
Q Consensus 75 ~QYRmhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g----~E~~~~~S~~N~~Ea~~V~~lV 150 (1987)
.|+|..++|+.+.+.. |. .+...+.+...........+. ..+++|+++.+- ..+.....+.|..||+.++.+.
T Consensus 1071 aqgrar~sI~~Ly~wr-y~-lLg~l~~v~~lp~f~~aNagf-~~~~qlinv~Df~g~gEt~p~p~fyQnlgeaey~vAly 1147 (1320)
T KOG1806|consen 1071 AQGRARASIASLYNWR-YP-LLGNLPHVSPLPRFQYANAGF-AYEFQFINVPDFKGSGETEPSPGFYQNLGEAEYAVALF 1147 (1320)
T ss_pred hhhhHHHHHHHHHHhh-hc-ccccCcCCccchhhhccccCc-eeeEEEecchhhccccccCCCcccccCCchhhhHHHHH
Confidence 9999999999998855 43 345555554433333223333 237899999642 2223556788999999999999
Q ss_pred HHHHHHhhcccCCccEEEEccCHHHHHHHHHHhhhhhhcc--cCccEEEeccCCCCCcccCEEEEEecccCCCCcccCCC
Q 000162 151 RNLYKAWVESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKI--AGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFAS 228 (1987)
Q Consensus 151 ~~L~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~--~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~ 228 (1987)
.++..-|. +...|.|.|.|.+|+.+|++.+..++... .+....|.|||+|||+..|+||+|+|++.. +|.+.
T Consensus 1148 ~YMr~Lgy---pa~Kisilttyngq~~lirdii~rrc~~nPfig~pAkv~tvdk~qgqqndfiIlslv~tr~---~gh~r 1221 (1320)
T KOG1806|consen 1148 QYMRLLGY---PANKISILTTYNGQKSLIRDIINRRCSHNPFIGQPAKVTTVDKFQGQQNDFIILSLVRTRE---VGHLR 1221 (1320)
T ss_pred HHHHHhCC---chhHeeEEEeecchHHHHHHHHHHhccCCCccCCcccCCccccccccccceEEeeehhhhh---hhhhc
Confidence 99887765 55689999999999999999998776532 345678999999999999999999999875 68899
Q ss_pred CCCceEEecccccccEEEEcchhhhcc
Q 000162 229 TPQRINVALTRARHCLWILGSERTLNH 255 (1987)
Q Consensus 229 d~nRLNVALTRAK~~LiIVGn~~~L~~ 255 (1987)
|++|+.||+||||.+++|.+....+.+
T Consensus 1222 dvrrlvva~srarlglyv~~r~~lf~~ 1248 (1320)
T KOG1806|consen 1222 DVRRLVVAMSRARLGLYVLCRRSLFRS 1248 (1320)
T ss_pred cHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 999999999999999999998877654
No 17
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.75 E-value=4.4e-17 Score=197.85 Aligned_cols=231 Identities=16% Similarity=0.114 Sum_probs=180.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHH-HHhhhHHhhhhhhc----------CChH-----HHHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRS-KATGLKAASDHIRS----------SNPL-----EANVILREA 904 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la-~A~~l~~aA~~l~s----------~~~~-----ea~~~y~eA 904 (1987)
..+.| |.++.+.|+++.|+++|..|++...+.-+ .....+.+|..+.. --++ ...+.|+.|
T Consensus 708 lee~w---g~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 708 LEEAW---GDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHH---hHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHH
Confidence 34556 99999999999999999999986543211 11122222222110 0111 234679999
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcC
Q 000162 905 ANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG----KPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGE 980 (1987)
Q Consensus 905 AelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~----~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak 980 (1987)
.++|.++|.+..|+.||.++|.|+.|-++.++-.+ ..+|...|+-+.+.|.|.+|.++|...|+.++||.||.+.+
T Consensus 785 e~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~ 864 (1636)
T KOG3616|consen 785 EELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHG 864 (1636)
T ss_pred HHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhC
Confidence 99999999999999999999999999999988333 35688899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHH----------
Q 000162 981 LFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQD-FLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNF---------- 1049 (1987)
Q Consensus 981 ~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~-~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~f---------- 1049 (1987)
..|.+++++++|......+++. +.+.+.+.+ -+..+..+|++.||++++++|++....|++|.+.
T Consensus 865 ~~ddmirlv~k~h~d~l~dt~~----~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~ 940 (1636)
T KOG3616|consen 865 LDDDMIRLVEKHHGDHLHDTHK----HFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAE 940 (1636)
T ss_pred cchHHHHHHHHhChhhhhHHHH----HHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHH
Confidence 9999999999987765544443 223333222 3667889999999999999999999999986544
Q ss_pred -------------------HhhcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 000162 1050 -------------------LKSKSCFDELLVLEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1050 -------------------L~k~~~~dEaiell~kaG~f~EA~~iAkq 1078 (1987)
|.++|.+.+++++.++.+.|+-||.+++-
T Consensus 941 k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari 988 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARI 988 (1636)
T ss_pred HHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHH
Confidence 77899999999998888888888777664
No 18
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.4e-16 Score=191.98 Aligned_cols=282 Identities=17% Similarity=0.133 Sum_probs=216.3
Q ss_pred hhhhHHhccChHHHHHhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHH
Q 000162 820 RLLVQVRQLDDSLAQAMQVASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANV 899 (1987)
Q Consensus 820 ~~Lvev~~~de~la~~la~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~ 899 (1987)
.+|++...+++. .+.+....+|+.|+.+|+++++...++-|..+|.|+||....++.+..+-. ..+..+..+....-+
T Consensus 671 ~~Lve~vgledA-~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i-~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 671 MNLVEAVGLEDA-IQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTI-HSKEQQRAEISAFYG 748 (1189)
T ss_pred HHHHHHhchHHH-HHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhh-hhHHHHhHhHhhhhc
Confidence 556666665554 466777899999999999999999999999999999997776666544311 011122233345678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC-------hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG-------KPELEKAGECFFLAGQYKHAAEVYARGNFFSEC 972 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~-------~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kA 972 (1987)
.|+||.++|..+.+-|.|++++.+.|||.++.++++..++ +..++.+|++|.....|++|+++|.++|+.+..
T Consensus 749 ~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~ 828 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQ 828 (1189)
T ss_pred chhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhH
Confidence 8999999999999999999999999999999999998433 455889999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHH-----HHHHHHHHhcCCHHHHHHHHHHhccHHHHH
Q 000162 973 LAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFL-----QSCALHYYQLNDKKSMMKFVKAFHSMDLMR 1047 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~l-----e~cA~~ylklgD~~~Am~~vk~~~s~d~aa 1047 (1987)
++++....+|+++..++....+.. ..+..++..|. ++|...|++.+++++|+..++..+.|.+|-
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~s----------~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPEDS----------ELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCccc----------chHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 999999999999998887666532 33556666663 678889999999999999999999998877
Q ss_pred HHHhhcCCH-------HHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhhcCC
Q 000162 1048 NFLKSKSCF-------DELLVLEEEAGNFMDAANIARLTGDILLTADLLQK-----AGNFKEACNLTLNYVLSNSLWSP 1114 (1987)
Q Consensus 1048 ~fL~k~~~~-------dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~k-----Ag~fdeA~rL~l~~~~~~~LW~~ 1114 (1987)
+..+++..- ..+++++ ..++..||.+..+.+|.++.||+++.+ +.++..-.|+-..|++++.|=.+
T Consensus 899 elaq~~~l~qv~tliak~aaqll-~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 899 ELAQRFQLPQVQTLIAKQAAQLL-ADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred HHHHhccchhHHHHHHHHHHHHH-hhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 776654331 1222333 456677777777777777777776643 23444455666667777766543
No 19
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=99.69 E-value=2.1e-17 Score=219.04 Aligned_cols=276 Identities=22% Similarity=0.260 Sum_probs=180.2
Q ss_pred cccchhhhHhHHHhhcc--cC--CChhhHhhhhhhccccccccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHH--
Q 000162 472 SYVENSNVTDSLLLMKF--YP--LSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTIL-- 542 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~--~~--~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVI-- 542 (1987)
+++|..++.....+... .+ +.. ..+..-+...+....++|++.|++++.. ++.++|||||||||||++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~t~~~ll~~~~~~~~~~~~~~q~~a~~vl~~de~smlt~~~~~~~~~~~~~ 353 (696)
T COG0507 277 RLAERLIARAELRILDSLFVALKIRA---GTVHRLLGEVPAKVKLRLSLEQKEALDVLVVDEVSMLTGGPGTGKTTAIKA 353 (696)
T ss_pred HHHHHHHHHHHHHHhhhhccccccch---hHHHHHhhhcccccCCCcCcccHHHHHHHhcCCeeEEeccCCcchHHHHHH
Confidence 67788777777765543 12 334 6777788888888889999999999999 999999999999999999
Q ss_pred HHHHHhhh----------hhhhhhhccccCCccchhHHhhhccccccC----------CCCCcc----------------
Q 000162 543 TMKLFQNE----------KHHRMAKEQFDGVNNSLTLHTSWEVEAEEG----------LGGSER---------------- 586 (1987)
Q Consensus 543 Iikl~~~~----------~raa~a~~~l~~~~~AaTIHrLLe~~~~~~----------f~~ned---------------- 586 (1987)
+.+++... +++++++.+.++.. +.|||+++++...+. +..++-
T Consensus 354 ~~~l~~~~~~~~l~aa~tG~a~~~l~e~tg~~-a~ti~~~~~~~~~~~~~~~~~~~d~~iiDe~~ml~~~~~~~l~~~i~ 432 (696)
T COG0507 354 IARLIKEGDGDQLLAAPTGKAAKRLNESTGLE-ARTIHRLLGLWEKTGNNEEPLDGDLLIIDEASMLDTSLAFGLLSAIG 432 (696)
T ss_pred HHHHHHhcCCcEEeechhhHHHHHHHHhhCcc-hhHHHHHHhccccCCCCCCccccceeEEehhhhHHHHHhhhhhcccc
Confidence 88887522 13446666666444 779999999876443 011110
Q ss_pred ----------------------------------ccccEEEeecccccccchhhhhhhhcCCcc----------------
Q 000162 587 ----------------------------------CILRQLFVTKFVLESRNTRNVERQEKGQLS---------------- 616 (1987)
Q Consensus 587 ----------------------------------~dL~~IFrqa~~~~S~iv~~a~~~~~g~l~---------------- 616 (1987)
..+..+|+|+ ..+.++..++++..+..+
T Consensus 433 ~~a~~i~vGD~~ql~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (696)
T COG0507 433 KLAKVILVGDVDQLPSVGAGAVFRDLIESIGIPELKLEKRFRQA--RDSSIILAAGQIYEGLLPLLATGRIQDRSAEAAD 510 (696)
T ss_pred cCCeEEEeCCHHhcCCCCCCchHHHHHhhhccchhhhHHHHHHH--hhhHHHHHHHHhhcccchhhcccchhhhhhhhhc
Confidence 1222233333 345566666666433211
Q ss_pred -------------cccccCcccCChhHHHHHHHHHHHHhhccCCCCccCCCCccccccCCCCeEeccCCcHHHHHHHHhc
Q 000162 617 -------------DIFNLSQNFRTHVGVLNLAQSVIELLYRFFPHSVDILKPETSLIYGEPPVLLESGNDENAIIKIFGN 683 (1987)
Q Consensus 617 -------------~i~~Lt~NYRs~~~I~~LAn~VleLl~~~~p~~~d~l~~e~~v~~G~kP~~l~~~~~~n~i~~i~~~ 683 (1987)
+++.|.++++...|+..++..|.+.+++.-.. +. .+....+.|++.+++.++... .+++.
T Consensus 511 ~~~~~~~~~~~~~~~~~L~~m~~g~~Gv~~lN~~lq~~l~~~~~~--~~-~~~~~~~~Gd~vm~~~N~~~~----~vfNG 583 (696)
T COG0507 511 QLVAAVEIIRALGDIQVLAPMRKGPLGVAKLNQALQALLNPKGDL--DR-RGLREFREGDKVMQLRNDRAL----GVFNG 583 (696)
T ss_pred ccchHHHHHHHhhhHHhhhhhhcCcccHHHHHHHHHHHhCCCccc--cc-ccccceecCCeeEEeeccccc----ceecC
Confidence 35567899999999999999999987654432 11 355667788777777554331 13321
Q ss_pred cCCCCCCcccc--CCc-EEEEecChh-----HHHHHHhhhcCCceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHH
Q 000162 684 SGDAGGNMVGF--GAE-QVILVRDDC-----VRKEISNYVGKQALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYE 755 (1987)
Q Consensus 684 ~~~~~~~~i~f--g~~-~vIiVr~d~-----~k~~l~~~Lg~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~ 755 (1987)
.. |. ...+ +.. .+++++.+. ....+.+. +++|++|||||||+|||.|++ ++.. ...|++
T Consensus 584 di--G~-~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~--~~ayA~TIHKsQGSef~~v~v-------~l~~-~~~~l~ 650 (696)
T COG0507 584 DI--GV-ILSIVKRRQGDVLVVDFDGREVVVARSELPEL--ELAYAMTIHKSQGSEFDRVIV-------LLPS-HSPMLS 650 (696)
T ss_pred cc--ce-EEeeccccCceEEEEecCCCEEEEehhhhhhh--hhheeeeEecccCCCCCeEEE-------EcCC-Cchhhh
Confidence 11 10 0110 000 223333321 11235553 689999999999999999999 4544 444443
Q ss_pred HHHHhhhccCCCCCCCCChhhhhhhcccccccCcEEecccccccchhc
Q 000162 756 YMKEQALLDSTLPASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIW 803 (1987)
Q Consensus 756 ~~k~q~~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIv 803 (1987)
+ +++||||||||++|.|+
T Consensus 651 r------------------------------~l~YtAiTRar~~l~l~ 668 (696)
T COG0507 651 R------------------------------ELLYTAITRARDRLILY 668 (696)
T ss_pred h------------------------------hHHHHHhhhhheeEEEE
Confidence 3 66999999999999998
No 20
>PRK11054 helD DNA helicase IV; Provisional
Probab=99.68 E-value=2.1e-16 Score=206.62 Aligned_cols=160 Identities=23% Similarity=0.304 Sum_probs=95.9
Q ss_pred cccccCcccCChhHHHHHHHHHHHHhhccCCCCccCCCCccccccCCCCeEeccCC-cHHHHHHHHhccCCCCCCccccC
Q 000162 617 DIFNLSQNFRTHVGVLNLAQSVIELLYRFFPHSVDILKPETSLIYGEPPVLLESGN-DENAIIKIFGNSGDAGGNMVGFG 695 (1987)
Q Consensus 617 ~i~~Lt~NYRs~~~I~~LAn~VleLl~~~~p~~~d~l~~e~~v~~G~kP~~l~~~~-~~n~i~~i~~~~~~~~~~~i~fg 695 (1987)
.+..|+.|||++.+|.++|+.++..-....+ .+-.+...|++|.+....+ ....+...+...... +
T Consensus 494 ~~~~L~~nYRs~~~I~~~An~~i~~n~~~~~------k~l~s~~~g~~p~v~~~~~~~~~~il~~l~~~~~~-------~ 560 (684)
T PRK11054 494 DRCHLDTTYRFNSRIGEVANRFIQQNPHQLK------KPLNSLTKGDKKAVTLLPEDQLEALLDKLSGYAKP-------D 560 (684)
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhCccccC------CcccccCCCCCceEEEeCCHHHHHHHHHHHHhhcC-------C
Confidence 4567999999999999999999863211111 1233456788877654433 233333333221111 2
Q ss_pred CcEEEEecChhHHHHHHhhh----cC-CceeeeeecccCCCCCeEEEeecCCCC---CcchhhHHHHHHHHHhhhccCCC
Q 000162 696 AEQVILVRDDCVRKEISNYV----GK-QALVLTIVESKGLEFQDVLLYDFFGSS---PLKNQWRVVYEYMKEQALLDSTL 767 (1987)
Q Consensus 696 ~~~vIiVr~d~~k~~l~~~L----g~-~a~VlTIhkSKGLEFD~VIL~dFfsds---pv~~~~~~l~~~~k~q~~~~~~~ 767 (1987)
...+|++|+...+..+.+.. .. ...++|+|.|||||||.|||+++.++. |....-..+.+. ..
T Consensus 561 ~~I~IL~R~~~~~~~~l~~~~~~~~~~~i~~~T~h~sKGLEfD~ViI~g~~~g~~gfP~~~~~~~~~~~---------~~ 631 (684)
T PRK11054 561 ERILLLARYHHLRPALLDKAATRWPKLQIDFMTIHASKGQQADYVIILGLQEGQDGFPAPARESIMEEA---------LL 631 (684)
T ss_pred CcEEEEEechhhHHHHHHHHHhhcccCCeEEEehhhhcCCcCCEEEEecCCcCcccCCcccccchhhhc---------cc
Confidence 35779999986654443321 12 234899999999999999999876532 211100001100 00
Q ss_pred CCCCCChhhhhhhcccccccCcEEecccccccchhccc
Q 000162 768 PASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIWEN 805 (1987)
Q Consensus 768 ~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~ 805 (1987)
|. ...| ....|+++||||+||||+.|+|+-+
T Consensus 632 ----~~--~~~~-~~~eERRLlYVAlTRAr~~l~i~~~ 662 (684)
T PRK11054 632 ----PP--PEDF-PDAEERRLLYVALTRAKHRVWLLFN 662 (684)
T ss_pred ----cc--cccc-ccHHHHHHHHHHhhhhhcEEEEEEc
Confidence 00 0011 1245789999999999999999876
No 21
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.67 E-value=1.4e-16 Score=210.86 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=65.7
Q ss_pred cccchhhhHhHHHhhcccC--CChhhHhhhhhhccccccccCcccCHHHHHhhcc----CCcEEEEcCCCCChhHHH--H
Q 000162 472 SYVENSNVTDSLLLMKFYP--LSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF----PRSTFILGRSGTGKTTIL--T 543 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~~--~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~----~~~~iItGgPGTGKTTVI--I 543 (1987)
+..|..++..+..|+.... .++ ..+...+. ..+.|+++|++||.. ++.++|+|+|||||||++ +
T Consensus 317 ~~~E~~i~~~~~~l~~~~~~~~~~---~~~~~~l~-----~~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i 388 (744)
T TIGR02768 317 IRLEAQMARSAEALSQSQGHGVSP---PIVDAAID-----QHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAA 388 (744)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCH---HHHHHHHh-----ccCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 5689999999988764332 444 22222222 458899999999997 479999999999999999 7
Q ss_pred HHHHhhhh----------hhhhhhccccCCccchhHHhhh
Q 000162 544 MKLFQNEK----------HHRMAKEQFDGVNNSLTLHTSW 573 (1987)
Q Consensus 544 ikl~~~~~----------raa~a~~~l~~~~~AaTIHrLL 573 (1987)
..+++..+ +++.++.+.++.+ +.|||+++
T Consensus 389 ~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~-a~Ti~~~~ 427 (744)
T TIGR02768 389 REAWEAAGYRVIGAALSGKAAEGLQAESGIE-SRTLASLE 427 (744)
T ss_pred HHHHHhCCCeEEEEeCcHHHHHHHHhccCCc-eeeHHHHH
Confidence 77776433 3444444444544 55999984
No 22
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=99.60 E-value=6.5e-16 Score=206.24 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=66.9
Q ss_pred cccchhhhHhHHHhhccc--CCChhhHhhhhhhccccccccCcccCHHHHHhhcc----CCcEEEEcCCCCChhHHH--H
Q 000162 472 SYVENSNVTDSLLLMKFY--PLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF----PRSTFILGRSGTGKTTIL--T 543 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~--~~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~----~~~~iItGgPGTGKTTVI--I 543 (1987)
+..|..++..+..|.... .+++. .+...+.. +...++.|+++|++||.. ++.++|+|+|||||||++ +
T Consensus 307 l~~E~~I~~~~~~l~~~~~~~v~~~---~~~~~l~~-~~~~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~ 382 (988)
T PRK13889 307 IETEQRLHRAAELMAERERHAVSDA---DREAALAR-AEARGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVA 382 (988)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHH-HHhcCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHH
Confidence 568999999888876533 35552 23333332 234579999999999997 568999999999999998 7
Q ss_pred HHHHhhhh----------hhhhhhccccCCccchhHHhhh
Q 000162 544 MKLFQNEK----------HHRMAKEQFDGVNNSLTLHTSW 573 (1987)
Q Consensus 544 ikl~~~~~----------raa~a~~~l~~~~~AaTIHrLL 573 (1987)
.++++..+ +++..+.+.+|.. +.|||+++
T Consensus 383 ~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~-a~TI~sll 421 (988)
T PRK13889 383 REAWEAAGYEVRGAALSGIAAENLEGGSGIA-SRTIASLE 421 (988)
T ss_pred HHHHHHcCCeEEEecCcHHHHHHHhhccCcc-hhhHHHHH
Confidence 77776433 2334444434444 55999986
No 23
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=99.57 E-value=8.8e-15 Score=192.62 Aligned_cols=60 Identities=28% Similarity=0.323 Sum_probs=45.0
Q ss_pred ceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhhhhhhcccccccCcEEecccccc
Q 000162 719 ALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNEAKHNVLCPELKQLYVAITRTRQ 798 (1987)
Q Consensus 719 a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk 798 (1987)
..++|||.|||||||+|+|+++.++.. |.-....-..++.|++|+||||||||+
T Consensus 552 V~L~TiH~sKGLEf~~Vfi~gl~eg~~--------------------------P~~~~~~~~~leEERRLfYVA~TRAk~ 605 (672)
T PRK10919 552 VQLMTLHASKGLEFPYVYLVGMEEGLL--------------------------PHQSSIDEDNIDEERRLAYVGITRAQK 605 (672)
T ss_pred EEEEeeecccCcCCCEEEEeCCcCCCC--------------------------CCcccCCcccHHHHHHHHHHhHhhhhh
Confidence 358899999999999999999765431 110000012467889999999999999
Q ss_pred cchhcc
Q 000162 799 RLWIWE 804 (1987)
Q Consensus 799 ~LvIve 804 (1987)
+|+|+-
T Consensus 606 ~L~Ls~ 611 (672)
T PRK10919 606 ELTFTL 611 (672)
T ss_pred heEEee
Confidence 999974
No 24
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.56 E-value=1.4e-14 Score=194.34 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=64.3
Q ss_pred cccchhhhHhHHHhhcccC--CChhhHhhhhhhccccccccCcccCHHHHHhhcc----CCcEEEEcCCCCChhHHH--H
Q 000162 472 SYVENSNVTDSLLLMKFYP--LSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF----PRSTFILGRSGTGKTTIL--T 543 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~~--~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~----~~~~iItGgPGTGKTTVI--I 543 (1987)
+.+|..++..+..|..... .++ ..+...+ ..++.|+++|++||.. +++++|+|+|||||||++ +
T Consensus 346 l~~E~~ia~~a~~l~~~~~~~v~~---~~l~a~~-----~~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~ 417 (1102)
T PRK13826 346 IRLEAEMARRAIWLSGRSSHGVRE---AVLAATF-----ARHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAA 417 (1102)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCH---HHHHHHH-----hcCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHH
Confidence 4488899988888754333 333 1222222 2368999999999986 779999999999999999 8
Q ss_pred HHHHhhhh----------hhhhhhccccCCccchhHHhh-hcc
Q 000162 544 MKLFQNEK----------HHRMAKEQFDGVNNSLTLHTS-WEV 575 (1987)
Q Consensus 544 ikl~~~~~----------raa~a~~~l~~~~~AaTIHrL-Le~ 575 (1987)
.++++..+ +++..+.+.+|.+ +.|||++ +.+
T Consensus 418 ~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~-a~TIas~ll~~ 459 (1102)
T PRK13826 418 REAWEAAGYRVVGGALAGKAAEGLEKEAGIQ-SRTLSSWELRW 459 (1102)
T ss_pred HHHHHHcCCeEEEEcCcHHHHHHHHHhhCCC-eeeHHHHHhhh
Confidence 88886443 2333333334443 4499996 454
No 25
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=99.56 E-value=2.2e-14 Score=191.09 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=31.3
Q ss_pred ccCHHHHHhhcc-CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~-~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.|+++|++||.+ .++++|+||||||||||++.|+.
T Consensus 4 ~Ln~~Q~~av~~~~g~~lV~AgaGSGKT~~l~~ria 39 (726)
T TIGR01073 4 HLNPEQREAVKTTEGPLLIMAGAGSGKTRVLTHRIA 39 (726)
T ss_pred ccCHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHH
Confidence 589999999998 89999999999999999955544
No 26
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.55 E-value=1e-13 Score=197.62 Aligned_cols=71 Identities=21% Similarity=0.172 Sum_probs=55.5
Q ss_pred CCcEEEEecCCCCChhhHhhhcc--CCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCCC
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQ--LPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMH 80 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~--l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmh 80 (1987)
+-|+||||||||+...++...+. .....++|||||+.|||||- ..+.|.-|...|.+.+.|+..-|..
T Consensus 529 ~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlvGD~~QL~sV~----------aG~~f~~L~~~gv~t~~l~~i~rq~ 598 (1960)
T TIGR02760 529 NKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLNDSAQRQGMS----------AGSAIDLLKEGGVTTYAWVDTKQQK 598 (1960)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEEcChhhcCccc----------cchHHHHHHHCCCcEEEeecccccC
Confidence 56899999999999888766664 22458999999999999984 2356777788889999998876654
Q ss_pred ccc
Q 000162 81 PSI 83 (1987)
Q Consensus 81 P~I 83 (1987)
-.+
T Consensus 599 ~~v 601 (1960)
T TIGR02760 599 ASV 601 (1960)
T ss_pred cce
Confidence 444
No 27
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=99.53 E-value=3.8e-14 Score=188.51 Aligned_cols=59 Identities=32% Similarity=0.378 Sum_probs=44.6
Q ss_pred eeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhh-hhhhcccccccCcEEecccccc
Q 000162 720 LVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNE-AKHNVLCPELKQLYVAITRTRQ 798 (1987)
Q Consensus 720 ~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~-~~~~~L~~ELnLLYVAITRAKk 798 (1987)
.+||||.|||||||+|+|+++.++. +|.... ..-..+..|++|+||||||||+
T Consensus 555 ~LmTiH~AKGLEf~~Vfl~gl~eg~--------------------------~P~~~~~~~~~~leEERRL~YVAiTRAk~ 608 (721)
T PRK11773 555 QLMTLHSAKGLEFPLVFIVGMEEGL--------------------------FPSQMSLEEGGRLEEERRLAYVGITRAMQ 608 (721)
T ss_pred EEEechhccCCcCCEEEEeCCccCC--------------------------CCCccccccchhhHHHHhHHHhhhhhhhh
Confidence 5899999999999999999976543 111000 0012467889999999999999
Q ss_pred cchhcc
Q 000162 799 RLWIWE 804 (1987)
Q Consensus 799 ~LvIve 804 (1987)
+|+|.-
T Consensus 609 ~L~ls~ 614 (721)
T PRK11773 609 KLTLTY 614 (721)
T ss_pred eeEEEe
Confidence 999974
No 28
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=99.52 E-value=4.5e-14 Score=187.80 Aligned_cols=35 Identities=31% Similarity=0.553 Sum_probs=31.3
Q ss_pred ccCHHHHHhhcc-CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~-~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.|+++|++||.+ .++++|.||||||||||++.|+.
T Consensus 4 ~Ln~~Q~~av~~~~g~~lV~AgaGSGKT~~L~~Ria 39 (715)
T TIGR01075 4 GLNDKQREAVAAPPGNLLVLAGAGSGKTRVLTHRIA 39 (715)
T ss_pred ccCHHHHHHHcCCCCCEEEEecCCCCHHHHHHHHHH
Confidence 589999999998 89999999999999999955554
No 29
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=99.45 E-value=1.2e-13 Score=169.71 Aligned_cols=140 Identities=21% Similarity=0.293 Sum_probs=93.3
Q ss_pred cccccCcccCChhHHHHHHHHHHHHhhccCCCCccCCCCccccccCCCCeEeccCCcHHHHHHHHhccCCCCCCccccCC
Q 000162 617 DIFNLSQNFRTHVGVLNLAQSVIELLYRFFPHSVDILKPETSLIYGEPPVLLESGNDENAIIKIFGNSGDAGGNMVGFGA 696 (1987)
Q Consensus 617 ~i~~Lt~NYRs~~~I~~LAn~VleLl~~~~p~~~d~l~~e~~v~~G~kP~~l~~~~~~n~i~~i~~~~~~~~~~~i~fg~ 696 (1987)
....|...|||+.+|+++||+++. |..+..+-.++|.+|..+.....+.. .+...... +.....-..
T Consensus 590 e~v~l~~syrSt~eI~efan~~l~----------d~~~~~p~~rsge~p~~i~~~~ne~l-~qr~~~ii--~~mkk~~~e 656 (747)
T COG3973 590 EYVGLIASYRSTAEIDEFANSLLP----------DRFRIHPLTRSGEKPAVIMSVANEEL-VQRNPDII--PRMKKRGSE 656 (747)
T ss_pred hhhhhhhhhcChHHHHHHHHHhcc----------CCCccchhhcCCCCceeeeccchHHH-HHhhHHHH--HHHHhcCCC
Confidence 445678999999999999999875 12334567788999999866554432 22211100 000011122
Q ss_pred cEEEEecChhHHHHHHhhhc----------------CCceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHh
Q 000162 697 EQVILVRDDCVRKEISNYVG----------------KQALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQ 760 (1987)
Q Consensus 697 ~~vIiVr~d~~k~~l~~~Lg----------------~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q 760 (1987)
..+|+++++.+...+.+.|. .-..|++++-+||||||+||+||.-
T Consensus 657 tiaVi~kt~~d~~~~~d~lre~~~~r~I~k~nq~f~~~~~vipvy~aKGlEFD~viv~d~s------------------- 717 (747)
T COG3973 657 TIAVICKTDHDCKAVMDSLREKDSQRTIAKENQRFHHGSDVIPVYDAKGLEFDHVIVVDPS------------------- 717 (747)
T ss_pred ceEEECCcHHHHHHHHHHHhhcchhhHHHhhcccccCCceEEEeeecccceeeeEEEecch-------------------
Confidence 57899999977766555442 1225899999999999999999821
Q ss_pred hhccCCCCCCCCChhhhhhhcccccccCcEEecccccccchhccc
Q 000162 761 ALLDSTLPASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIWEN 805 (1987)
Q Consensus 761 ~~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~ 805 (1987)
.+..-...++.||||+|||.+.|+|+-.
T Consensus 718 -----------------~~e~te~~~r~LYva~TRAlh~l~if~~ 745 (747)
T COG3973 718 -----------------IVEETEQDLRDLYVAVTRALHSLYIFGE 745 (747)
T ss_pred -----------------hhcccccchhhHHHHHHHHHHHHHHhhc
Confidence 0111123468899999999999998754
No 30
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.41 E-value=1.2e-12 Score=169.12 Aligned_cols=55 Identities=25% Similarity=0.272 Sum_probs=46.1
Q ss_pred EEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEecccccccEEEEcchhhhc
Q 000162 195 VKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRARHCLWILGSERTLN 254 (1987)
Q Consensus 195 V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVALTRAK~~LiIVGn~~~L~ 254 (1987)
..+.|||++||+|+|.||+...... .-+.+++.+|||+||||+.++|+|+...+.
T Consensus 521 ayA~TvHKSQGsef~~Vi~~l~~~~-----~~~l~r~llYTaiTRAk~~l~i~~~~~~l~ 575 (586)
T TIGR01447 521 AFAMTVHKSQGSEFDHVILILPNGN-----SPVLTRELLYTGITRAKDQLSVWSDKETLN 575 (586)
T ss_pred EEEEEeeHhcCCcCCeEEEECCCCC-----CcccccceeEEEeeehhCeEEEEECHHHHH
Confidence 5689999999999999999876432 235678999999999999999999977553
No 31
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=99.41 E-value=1.1e-12 Score=173.60 Aligned_cols=58 Identities=28% Similarity=0.355 Sum_probs=43.6
Q ss_pred eeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhhhhhhcccccccCcEEeccccccc
Q 000162 720 LVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNEAKHNVLCPELKQLYVAITRTRQR 799 (1987)
Q Consensus 720 ~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~ 799 (1987)
.++|||.|||||||+|+|+++.++.. |......-..+..|++++||||||||++
T Consensus 553 ~l~TiH~sKGLEf~~Vfv~gl~eg~~--------------------------P~~~~~~~~~~~EErRlfYVA~TRAk~~ 606 (664)
T TIGR01074 553 QLMTLHASKGLEFPYVFIVGMEEGIL--------------------------PHQSSIEEDNVEEERRLAYVGITRAQKE 606 (664)
T ss_pred EEEeeecccCccCCeEEEeCCcCCCC--------------------------CCccccccchHHHHHHHHHHhhhhhhhe
Confidence 58899999999999999999776431 1100000113467889999999999999
Q ss_pred chhc
Q 000162 800 LWIW 803 (1987)
Q Consensus 800 LvIv 803 (1987)
|+|.
T Consensus 607 L~Ls 610 (664)
T TIGR01074 607 LTFT 610 (664)
T ss_pred eEEE
Confidence 9997
No 32
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.39 E-value=1.2e-12 Score=173.21 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=56.5
Q ss_pred CCcEEEEecCCCCChhhHhhhcc-CCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC-CCCceecccccCCC
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQ-LPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL-GHPKHLLSMQYRMH 80 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~-l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~-g~p~~~L~~QYRmh 80 (1987)
+.|+||||||||++...+...+. ++...++|||||+.|||||-. | ..|..+... ..|.+.|++.||..
T Consensus 416 ~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rlilvGD~~QLpsV~~---------G-~v~~dl~~~~~~~~~~L~~i~RQ~ 485 (720)
T TIGR01448 416 DCDLLIVDESSMMDTWLALSLLAALPDHARLLLVGDTDQLPSVGP---------G-QVLKDLILSQAIPVTRLTKVYRQA 485 (720)
T ss_pred cCCEEEEeccccCCHHHHHHHHHhCCCCCEEEEECccccccCCCC---------C-chHHHHHhcCCCCEEEeCeeeccC
Confidence 57999999999999876544443 345579999999999999842 2 345555554 47899999999996
Q ss_pred c--ccccccc
Q 000162 81 P--SISFFPN 88 (1987)
Q Consensus 81 P--~Is~f~s 88 (1987)
. .|...+.
T Consensus 486 ~~s~i~~~a~ 495 (720)
T TIGR01448 486 AGSPIITLAH 495 (720)
T ss_pred CCcHHHHHHH
Confidence 3 4665554
No 33
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.33 E-value=3.8e-12 Score=164.75 Aligned_cols=55 Identities=25% Similarity=0.218 Sum_probs=44.8
Q ss_pred EEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEecccccccEEEEcchhhhc
Q 000162 195 VKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRARHCLWILGSERTLN 254 (1987)
Q Consensus 195 V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVALTRAK~~LiIVGn~~~L~ 254 (1987)
..+.|||++||+|+|.||+...... ..+.+++.+|||+||||+.++|+|+...|.
T Consensus 539 ayA~TVHKSQGsEf~~Vilvlp~~~-----~~~l~R~LlYTaiTRAk~~l~l~~~~~~l~ 593 (615)
T PRK10875 539 AWAMTVHKSQGSEFDHTALVLPNQF-----TPVVTRELVYTAITRARRRLSLYADERVLS 593 (615)
T ss_pred EEEEehhhhcCCCCCeEEEECCCcc-----chhhhhhhHHhhhhhhhceEEEEeCHHHHH
Confidence 4578999999999999988764322 124568899999999999999999987654
No 34
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.29 E-value=6.1e-11 Score=145.01 Aligned_cols=214 Identities=14% Similarity=0.177 Sum_probs=171.7
Q ss_pred hcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHH-HHhhhH-HhhhhhhcCChHHHHHHHHHHHHHHHHcCCHH
Q 000162 838 VASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRS-KATGLK-AASDHIRSSNPLEANVILREAANIFEAIGKAD 915 (1987)
Q Consensus 838 ~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la-~A~~l~-~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~d 915 (1987)
.+.+|.+- .+|..++++|.|.+|.+.|.++|....+.-. -..... .+.+.+...++++.+....+-|+.-..+.++.
T Consensus 629 rge~P~~i-LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk 707 (1081)
T KOG1538|consen 629 RGETPNDL-LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK 707 (1081)
T ss_pred cCCCchHH-HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence 35567765 5799999999999999999999986443110 011111 12334566788888888889999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhcC---------------hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcC
Q 000162 916 SAAKCFYDLGEYERAGKIYEERCG---------------KPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGE 980 (1987)
Q Consensus 916 kAAk~y~kaGdyekA~eLy~e~~~---------------~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak 980 (1987)
.||+|.+.+|+-.||+++..+.+. .+-+..+|.++.....+-.|+++|.+.||....+.|.++.+
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~ 787 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQ 787 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecc
Confidence 999999999999999988654221 24488899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHH
Q 000162 981 LFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELL 1060 (1987)
Q Consensus 981 ~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEai 1060 (1987)
.|++|+++++.+++..+. .|.++ ++||.+.++|+||.
T Consensus 788 ~W~eAFalAe~hPe~~~d------------------------Vy~py-------------------aqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 788 RWDEAFALAEKHPEFKDD------------------------VYMPY-------------------AQWLAENDRFEEAQ 824 (1081)
T ss_pred cchHhHhhhhhCcccccc------------------------ccchH-------------------HHHhhhhhhHHHHH
Confidence 999999999888775443 45555 68899999999999
Q ss_pred HHHHHhCCHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000162 1061 VLEEEAGNFMDAANIARLTGDILLTADLLQKAGNF 1095 (1987)
Q Consensus 1061 ell~kaG~f~EA~~iAkq~Gd~l~Aae~L~kAg~f 1095 (1987)
+.+.++|+-.||.+++++--...-+.+.|.+|+.|
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~y~ 859 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYY 859 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhhhhhhhhhccchhH
Confidence 99999999999999999987666666667666544
No 35
>PRK11054 helD DNA helicase IV; Provisional
Probab=99.25 E-value=1.9e-11 Score=160.54 Aligned_cols=211 Identities=19% Similarity=0.270 Sum_probs=128.8
Q ss_pred CCCcEEEEecCCCCChhhHhhhccC---CCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC--CCCceecccc
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQL---PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL--GHPKHLLSMQ 76 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l---~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~--g~p~~~L~~Q 76 (1987)
.+|++|+|||+..++..+.-+.-.+ .+..++++|||+.|- |. ...|....++..+... ....+.|+++
T Consensus 429 ~~~~~IlVDE~QD~s~~q~~ll~~l~~~~~~~~l~~VGD~~Qs--IY-----~frGa~~~~~~~f~~~f~~~~~~~L~~n 501 (684)
T PRK11054 429 SPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQA--IY-----RFSGADLSLTTAFHERFGEGDRCHLDTT 501 (684)
T ss_pred hcccEEEEEccccCCHHHHHHHHHHhccCCCCeEEEEECCCcc--cc-----ccCCCChHHHHHHHhhcCCCeEEEeCCC
Confidence 3699999999999987775333222 234689999999993 22 1223344455544331 2246789999
Q ss_pred cCCCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHH
Q 000162 77 YRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKA 156 (1987)
Q Consensus 77 YRmhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~ 156 (1987)
||+++.|.+++|..+=.+. ........ ....++ .|.+.+.- + .+.+.+++.+..+.
T Consensus 502 YRs~~~I~~~An~~i~~n~-----~~~~k~l~-s~~~g~--~p~v~~~~-------------~-~~~~~il~~l~~~~-- 557 (684)
T PRK11054 502 YRFNSRIGEVANRFIQQNP-----HQLKKPLN-SLTKGD--KKAVTLLP-------------E-DQLEALLDKLSGYA-- 557 (684)
T ss_pred CCCCHHHHHHHHHHHHhCc-----cccCCccc-ccCCCC--CceEEEeC-------------C-HHHHHHHHHHHHhh--
Confidence 9999999999986542211 00000000 000111 12222211 0 13444444444332
Q ss_pred hhcccCCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccCEEEEEecccCCC--C------------
Q 000162 157 WVESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNT--G------------ 222 (1987)
Q Consensus 157 ~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~--~------------ 222 (1987)
.+..+|+||+.|..+...+.+.+...+ +...|.+.|+|.+.|.|+|+||+..+..+.. +
T Consensus 558 ----~~~~~I~IL~R~~~~~~~~l~~~~~~~---~~~~i~~~T~h~sKGLEfD~ViI~g~~~g~~gfP~~~~~~~~~~~~ 630 (684)
T PRK11054 558 ----KPDERILLLARYHHLRPALLDKAATRW---PKLQIDFMTIHASKGQQADYVIILGLQEGQDGFPAPARESIMEEAL 630 (684)
T ss_pred ----cCCCcEEEEEechhhHHHHHHHHHhhc---ccCCeEEEehhhhcCCcCCEEEEecCCcCcccCCcccccchhhhcc
Confidence 235799999999988765555444332 3447999999999999999999876643320 0
Q ss_pred ---cccC--CCCCCceEEecccccccEEEEcch
Q 000162 223 ---SIGF--ASTPQRINVALTRARHCLWILGSE 250 (1987)
Q Consensus 223 ---~iGF--L~d~nRLNVALTRAK~~LiIVGn~ 250 (1987)
.-.| -.+++.++||+||||+.|+|+.+.
T Consensus 631 ~~~~~~~~~~eERRLlYVAlTRAr~~l~i~~~~ 663 (684)
T PRK11054 631 LPPPEDFPDAEERRLLYVALTRAKHRVWLLFNK 663 (684)
T ss_pred cccccccccHHHHHHHHHHhhhhhcEEEEEEcC
Confidence 0011 124677999999999999999873
No 36
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.4e-09 Score=135.96 Aligned_cols=265 Identities=12% Similarity=0.148 Sum_probs=160.3
Q ss_pred CCcHHHHHHhhhhhHHhc---cCh---------HH-HHHhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHH
Q 000162 810 SKPMFDYWKKRLLVQVRQ---LDD---------SL-AQAMQVASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGR 876 (1987)
Q Consensus 810 s~Pm~~ywek~~Lvev~~---~de---------~l-a~~la~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~l 876 (1987)
++|+.+|..-.++-++.. +++ +- ...++...+...|-.+|..+.+..+.+.|.-|.-..+..+.++.
T Consensus 712 ~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA 791 (1416)
T KOG3617|consen 712 AKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA 791 (1416)
T ss_pred hhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH
Confidence 467777765544444321 222 11 24456677889999999999999999999999988888655432
Q ss_pred HHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC---hhHHHHHHHHHHHc
Q 000162 877 SKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG---KPELEKAGECFFLA 953 (1987)
Q Consensus 877 a~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~---~~ll~~aAe~fE~a 953 (1987)
.+....-......+..-+....+..++|..+|.++.++|.--++|...|+|.+|.++++.... ...|.+.|.+++..
T Consensus 792 lR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 792 LRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222111000000111122335677999999999999999999999999999999999987433 45688999999999
Q ss_pred CCHHHHHHHHHhcCC-----------HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHH
Q 000162 954 GQYKHAAEVYARGNF-----------FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCAL 1022 (1987)
Q Consensus 954 gqy~kAAeLYeKaGd-----------~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~ 1022 (1987)
++-+.|.+.|+|+|. +-++++.|++-+.=+.+.+-=-+|.+. .+-...|...|..+++|+..+..
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaAl~~Y~~A~D~fs~VrI 947 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAALSFYSSAKDYFSMVRI 947 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHHHHHHHHhhhhhhheee
Confidence 999999999999964 355666666544433333333233331 12223445566666676654333
Q ss_pred HHHhcCCHHHHHHHHHHhccHHH---HHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc
Q 000162 1023 HYYQLNDKKSMMKFVKAFHSMDL---MRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT 1079 (1987)
Q Consensus 1023 ~ylklgD~~~Am~~vk~~~s~d~---aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~ 1079 (1987)
++. .|...+|-++......... .++.++..|++-+|+.++-++.-|.-|.++++++
T Consensus 948 ~C~-qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn 1006 (1416)
T KOG3617|consen 948 KCI-QGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN 1006 (1416)
T ss_pred Eee-ccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333 2333333333332221111 2222333444455555555555555555555544
No 37
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.19 E-value=8e-11 Score=156.67 Aligned_cols=69 Identities=23% Similarity=0.220 Sum_probs=52.0
Q ss_pred CCCcEEEEecCCCCChhhHhhhcc--CCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQ--LPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRM 79 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~--l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRm 79 (1987)
.+.|+||||||||++...+...+. .....++|||||+.|||||..+ ..|..+.. ..+.+.|+..||.
T Consensus 438 ~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliLVGD~~QLpsVgaG----------~~f~~l~~-~~~~~~Lt~I~RQ 506 (744)
T TIGR02768 438 SDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAG----------AAFRAIAE-RIGYAELETIRRQ 506 (744)
T ss_pred CCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECChHHccccccC----------cHHHHHHH-hhCeEEeeeEEec
Confidence 357999999999999776544443 2235789999999999999532 35555554 4688999999998
Q ss_pred Cc
Q 000162 80 HP 81 (1987)
Q Consensus 80 hP 81 (1987)
..
T Consensus 507 ~~ 508 (744)
T TIGR02768 507 RE 508 (744)
T ss_pred CC
Confidence 54
No 38
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=99.09 E-value=2e-10 Score=152.12 Aligned_cols=62 Identities=34% Similarity=0.462 Sum_probs=46.0
Q ss_pred ceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhhhhhh--cccccccCcEEecccc
Q 000162 719 ALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNEAKHN--VLCPELKQLYVAITRT 796 (1987)
Q Consensus 719 a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~~~--~L~~ELnLLYVAITRA 796 (1987)
..+||+|.|||||||.|+++++..+. +|+.....-. .+..|++++|||||||
T Consensus 555 V~lmT~H~aKGlEf~~Vfl~g~~eg~--------------------------~P~~~~~~~~~~~~eEERRL~YVaiTRA 608 (655)
T COG0210 555 VNLMTIHAAKGLEFPYVFLVGLEEGL--------------------------FPADRSLDEGDEPLEEERRLLYVAITRA 608 (655)
T ss_pred eEEEechhccCCCCCeEEEecccCCC--------------------------CCChhhcccCCCCccHHHHHHHHHHHHH
Confidence 34789999999999999999876543 1221000000 4778999999999999
Q ss_pred cccchhcccc
Q 000162 797 RQRLWIWENM 806 (1987)
Q Consensus 797 Kk~LvIve~~ 806 (1987)
++.|+|.-..
T Consensus 609 ~~~L~~t~~~ 618 (655)
T COG0210 609 KKKLYLTYAA 618 (655)
T ss_pred HHhhhhhHHH
Confidence 9999998654
No 39
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.01 E-value=1.2e-09 Score=147.79 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=53.6
Q ss_pred CCCcEEEEecCCCCChhhHhhhccC--CCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQL--PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRM 79 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l--~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRm 79 (1987)
.+-++||||||||+....+...+.. ....++|||||+.|||||-.+ ..|..+.. .++.+.|++.||.
T Consensus 467 ~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~~V~aG----------~~f~~l~~-~i~~a~LteI~RQ 535 (1102)
T PRK13826 467 DNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAG----------AAFRAIAD-RIGYAELETIYRQ 535 (1102)
T ss_pred CCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECCHHHcCCCCCC----------cHHHHHHh-hcCEEEeeeeeec
Confidence 3457999999999998877555432 235799999999999999532 35666654 5788999999998
Q ss_pred Ccc
Q 000162 80 HPS 82 (1987)
Q Consensus 80 hP~ 82 (1987)
..+
T Consensus 536 ~~~ 538 (1102)
T PRK13826 536 REQ 538 (1102)
T ss_pred CCh
Confidence 554
No 40
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.93 E-value=2.2e-09 Score=144.69 Aligned_cols=70 Identities=23% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCCcEEEEecCCCCChhhHhhhcc--CCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQ--LPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRM 79 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~--l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRm 79 (1987)
.+.++||||||||+....+.-.+. .....++|||||+.|||||-. ...|.-|.. .++.+.|++.+|.
T Consensus 432 ~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLVGD~~QLpsV~a----------G~~f~~L~~-~~~~a~LteI~RQ 500 (988)
T PRK13889 432 TSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEA----------GAAFRSIHE-RHGGAEIGEVRRQ 500 (988)
T ss_pred ccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEECCHHHcCCCCC----------CchHHHHHH-hcCeEEeceeecC
Confidence 356899999999999877655543 234579999999999999942 245655543 3678999999999
Q ss_pred Ccc
Q 000162 80 HPS 82 (1987)
Q Consensus 80 hP~ 82 (1987)
..+
T Consensus 501 ~~~ 503 (988)
T PRK13889 501 RED 503 (988)
T ss_pred CCH
Confidence 654
No 41
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=98.92 E-value=4.1e-09 Score=121.53 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=53.5
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCCCcc
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMHPS 82 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmhP~ 82 (1987)
+++++||||+.+++.......+...+++.++++|||.|.+..-.........+.... .....+.+.||+...
T Consensus 62 ~~~~liiDE~~~~~~g~l~~l~~~~~~~~~~l~GDp~Q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~~~~ 133 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLLLLLSLSPAKNVILFGDPLQIPYISRNDSFLLPHFISDI--------SHRFGKRTSYRCPSD 133 (234)
T ss_pred cCCEEEEeccccCChHHHHHHHhhccCcceEEEECchhccCCcccccceecccccce--------eeeecceeEeecccc
Confidence 489999999999997555554445667899999999998776432211111111111 233456778999888
Q ss_pred cccccccc
Q 000162 83 ISFFPNSY 90 (1987)
Q Consensus 83 Is~f~s~~ 90 (1987)
+..+.+..
T Consensus 134 ~~~~~~~~ 141 (234)
T PF01443_consen 134 RFDIISAL 141 (234)
T ss_pred cceeeecc
Confidence 88887755
No 42
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=98.88 E-value=8.6e-10 Score=154.45 Aligned_cols=92 Identities=21% Similarity=0.151 Sum_probs=61.2
Q ss_pred cccchhhhHhHHHhhcccCCChhhHhhhhhhccccccccCcccCHHHHHhhcc-----CCcEEEEcCCCCChhHHH--HH
Q 000162 472 SYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF-----PRSTFILGRSGTGKTTIL--TM 544 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~~~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI--Ii 544 (1987)
|..|..|+..+...... ..+ ++.. .+..+.+.|++.|++||.. .++++|+|+|||||||++ ++
T Consensus 936 ~~~E~~I~~~i~~gk~~--~~~-~~~~-------~~~~~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~ 1005 (1747)
T PRK13709 936 YEAEKSILRHILEGKEA--VTP-LMER-------VPGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVM 1005 (1747)
T ss_pred HHHHHHHHHHHHHhccC--Ccc-hhhh-------HHHHhcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 55888998888775432 111 1111 2234457899999999988 469999999999999999 77
Q ss_pred HHHhhh----h----------hhhhhhccccCCccchhHHhhhcc
Q 000162 545 KLFQNE----K----------HHRMAKEQFDGVNNSLTLHTSWEV 575 (1987)
Q Consensus 545 kl~~~~----~----------raa~a~~~l~~~~~AaTIHrLLe~ 575 (1987)
.+++.. + ++++++.+ +|.+ +.|||++|..
T Consensus 1006 ~~~~~l~~~~~~~V~glAPTgrAAk~L~e-~Gi~-A~TI~s~L~~ 1048 (1747)
T PRK13709 1006 SAVNTLPESERPRVVGLGPTHRAVGEMRS-AGVD-AQTLASFLHD 1048 (1747)
T ss_pred HHHHHhhcccCceEEEECCcHHHHHHHHh-cCcc-hhhHHHHhcc
Confidence 777421 1 22333333 2333 4599999964
No 43
>PRK13909 putative recombination protein RecB; Provisional
Probab=98.85 E-value=6.3e-09 Score=142.08 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=91.6
Q ss_pred CCCcEEEEecCCCCChhhH--hhhcc---CCC-----cceEEEEecCCCCCcccccccccccccCccHHHHHHhC-CCCc
Q 000162 2 EQLKFVVIDEAAQLKESES--AIPLQ---LPC-----IQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL-GHPK 70 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~--LipL~---l~~-----~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~-g~p~ 70 (1987)
.+|++|+|||+...+..+. +.+|. +.+ ...+++|||++| .|. ...|....+|.++... +...
T Consensus 327 ~~~~~ilVDEfQDTs~~Q~~il~~L~~~~~~~~~~~~~~~lf~VGD~kQ--SIY-----~FRGA~~~~f~~~~~~~~~~~ 399 (910)
T PRK13909 327 SKISHILIDEFQDTSVLQYKILLPLIDEIKSGEGQKKFRSFFYVGDVKQ--SIY-----RFRGGKKELFDKVSKDFKQKV 399 (910)
T ss_pred cCCCEEEEECccCCCHHHHHHHHHHHHHhhcccccCCCCeEEEEcCchh--hhh-----hhcCCChHHHHHHHHHhhhhh
Confidence 4699999999999987664 33432 111 357999999999 222 2233345677776542 2245
Q ss_pred eecccccCCCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHH
Q 000162 71 HLLSMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKIL 150 (1987)
Q Consensus 71 ~~L~~QYRmhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV 150 (1987)
..|+++||++|.|.++.|..|-.. ....+.... ... . .++.+.+.... .....+++.+.+.+
T Consensus 400 ~~L~~NyRS~~~Iv~~~N~~f~~~-~~~~~~~~~------~~~-~-~~g~v~i~~~~---------~~~~~~a~~ia~~I 461 (910)
T PRK13909 400 DNLDTNYRSAPLIVDFVNEVFKKK-YKNYKTQYA------EQH-K-SGGYVEVVEVA---------DESEELLEQLLQEI 461 (910)
T ss_pred cccccCCCCChHHHHHHHHHHHHH-HHhhhhhhc------ccc-c-CCCcEEEEECC---------CccHHHHHHHHHHH
Confidence 789999999999999999887431 111000000 000 0 11122222211 01233567777777
Q ss_pred HHHHHHhhcccCCccEEEEccCHHHHHHHHHHhh
Q 000162 151 RNLYKAWVESKEKLSIGIVSPYSAQVIAIQEKLG 184 (1987)
Q Consensus 151 ~~L~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~ 184 (1987)
..+...+ ....+|+|+++.+.|...+.+.|.
T Consensus 462 ~~l~~~g---~~~~dIaILvR~~~~~~~l~~~L~ 492 (910)
T PRK13909 462 QFLLEKG---IDPDDIAILCWTNDDALEIKEFLQ 492 (910)
T ss_pred HHHHHcC---CCcCCEEEEEecCccHHHHHHHHH
Confidence 7776653 356789999888776666655443
No 44
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.81 E-value=1.5e-08 Score=133.18 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=54.4
Q ss_pred cEEEEecChhHHHHHHhhhcC---CceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCC
Q 000162 697 EQVILVRDDCVRKEISNYVGK---QALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPS 773 (1987)
Q Consensus 697 ~~vIiVr~d~~k~~l~~~Lg~---~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~ 773 (1987)
+.+||++.......+.+.+.. ...|-|++.-||.|.|+||+--..++.. .+
T Consensus 529 ~IgVItPY~aQv~~L~~~l~~~~~~i~v~TVd~fQG~E~DvIi~S~vrsn~~-----------------------~~--- 582 (637)
T TIGR00376 529 DIGVITPYDAQVDLLRQLLEHRHIDIEVSSVDGFQGREKEVIIISFVRSNRK-----------------------GE--- 582 (637)
T ss_pred eEEEEcccHHHHHHHHHHHHhhCCCeEEccccccCCccccEEEEEEEecCCC-----------------------CC---
Confidence 577999999877666665532 3468899999999999888743221110 00
Q ss_pred hhhhhhhcccccccCcEEecccccccchhccccc
Q 000162 774 FNEAKHNVLCPELKQLYVAITRTRQRLWIWENME 807 (1987)
Q Consensus 774 ~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~~~ 807 (1987)
...+ .+.+.|+||+||||+.|+|+-+..
T Consensus 583 -----~gFl-~d~rRLNVAlTRAK~~LiIvGn~~ 610 (637)
T TIGR00376 583 -----VGFL-KDLRRLNVALTRARRKLIVIGDSR 610 (637)
T ss_pred -----cccc-cCcceeeeehhhhhCceEEEECHH
Confidence 0011 234779999999999999997654
No 45
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.1e-07 Score=107.37 Aligned_cols=173 Identities=20% Similarity=0.271 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHhcccchhHH---HHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 843 EEWKSRGIKLFYE-NNYEMATICFEKAKDTYWEGR---SKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 843 eeWkklA~~l~~~-g~ye~A~k~F~rAgd~~la~l---a~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
.+....|..+++. ++|+.|..+|.+|.+.++..- ..+....++++..++.+|.++...++.|.++|..+|++..|+
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aA 113 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAA 113 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3555666666665 899999999999999776532 245566778888899999999999999999999999999998
Q ss_pred HHHHHhC--------CHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHH-------HhcCCHHHHHHHHHhcCChH
Q 000162 919 KCFYDLG--------EYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVY-------ARGNFFSECLAVCSRGELFD 983 (1987)
Q Consensus 919 k~y~kaG--------dyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLY-------eKaGd~~kAIemy~kak~wd 983 (1987)
+.+...+ ++++|+.. |+++|+||..-..-..|-+++ .+.+.|.+||.+|.+
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~---------YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeq----- 179 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAH---------YEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQ----- 179 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHH---------HHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 8875443 33344433 344666666543333333444 444455555555443
Q ss_pred HHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHH
Q 000162 984 IGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMD 1044 (1987)
Q Consensus 984 ~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d 1044 (1987)
...+. .+ ...+.-.+++|+-+++.|++...|.-.+.+.+..+...+
T Consensus 180 --------va~~s-~~------n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 180 --------VARSS-LD------NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred --------HHHHh-cc------chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 33321 11 133666788899999999999999999988888877666
No 46
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=2.3e-08 Score=138.76 Aligned_cols=173 Identities=14% Similarity=0.046 Sum_probs=94.4
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCC-Cc--ceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLP-CI--QHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYR 78 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~-~~--krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYR 78 (1987)
.+|++|+|||....+..+.-+.-.+. +. ..+++||||+| .|. ...|.+...|.+....-...+.|+++||
T Consensus 295 ~ry~~vLVDEFQDTd~~Q~~il~~L~~~~~~~~L~~VGDpKQ--SIY-----~FRGAD~~~~~~~~~~~~~~~~L~~NyR 367 (1087)
T TIGR00609 295 EQYPIALIDEFQDTDPQQYRIFSKLFIAQKTTSLFLIGDPKQ--AIY-----SFRGADIFTYLQAKSKADARYTLGTNWR 367 (1087)
T ss_pred hCCCEEEEECCcCCCHHHHHHHHHHHhCCCCCeEEEEECCcc--ccc-----cCCCCCHHHHHHHHHhcCcEEECCCCCC
Confidence 47999999999999877653332222 22 27999999999 332 1223344455444432225679999999
Q ss_pred CCccccccccccccCCccc-----cCcccccccc---ccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHH
Q 000162 79 MHPSISFFPNSYFYENKIR-----DAPTVRKRSY---EKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKIL 150 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~g~L~-----~~~~v~~~~~---~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV 150 (1987)
++|.|.+++|..|-...-. +..++..... .....+++..+++.++.... ... +....-..+++.+.+-+
T Consensus 368 S~~~Iv~~~N~lf~~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--~~~~~~~~~a~~~a~~I 444 (1087)
T TIGR00609 368 STPALVGSLNKLFSLISNPFLEKPIFIPVLAHQKNSKGSFVINGQEQPPIHFFTTEV-ESE--GVDDYRQTIAQKCAREI 444 (1087)
T ss_pred CcHHHHHHHHHHHhccccccccCCCCCcccchhhcCCCccccCCCCCCCeEEeecCC-ccc--ccchHHHHHHHHHHHHH
Confidence 9999999999887432110 0001110000 00011222234555554421 110 00001123455555655
Q ss_pred HHHHHHhh------------cccCCccEEEEccCHHHHHHHHHHhh
Q 000162 151 RNLYKAWV------------ESKEKLSIGIVSPYSAQVIAIQEKLG 184 (1987)
Q Consensus 151 ~~L~~~~~------------~~~~~~sIgIITPY~aQv~~Ir~~L~ 184 (1987)
..++..+. .+.+..+|+|++.-+.|...|++.|.
T Consensus 445 ~~ll~~~~~~~~~~~~~~~~r~v~~~DIAVLvRs~~~a~~i~~aL~ 490 (1087)
T TIGR00609 445 ALWLASAALGLANFIATFGGRPLRAGDIAVLVRGRKEANQIRKALK 490 (1087)
T ss_pred HHHHHhccccccccccccCcCCCCcccEEEEEeCCchHHHHHHHHH
Confidence 55554321 12346789999988877777766553
No 47
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=98.78 E-value=1.1e-08 Score=141.98 Aligned_cols=177 Identities=17% Similarity=0.053 Sum_probs=100.9
Q ss_pred CCCcEEEEecCCCCChhhH--hhhccCCC---cceEEEEecCCCCCcccccccccccccCccHHHHHHh--CCCCceecc
Q 000162 2 EQLKFVVIDEAAQLKESES--AIPLQLPC---IQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY--LGHPKHLLS 74 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~--LipL~l~~---~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~--~g~p~~~L~ 74 (1987)
.+|+.|.|||+...+..+- +-.+.... ...++|||||+| .|. ...|.+..+|..... .......|.
T Consensus 377 ~~~~~iLIDEfQDT~~~Q~~Il~~l~~~~~~~~~~lF~VGD~KQ--SIY-----~FRgAD~~~f~~a~~~~~~~~~~~L~ 449 (1139)
T COG1074 377 EQYPHILIDEFQDTDPQQWRILSRLFAGFKAGNRTLFLVGDPKQ--SIY-----RFRGADIFTFLEAASSEKAFARITLE 449 (1139)
T ss_pred hcCCeEEeeccccCCHHHHHHHHHHHhcCCCCCCceEEecCchH--Hhh-----hhcCCChHHHHHHhhccccCceeecc
Confidence 4789999999988775542 23332221 258999999999 232 334556777777776 566788999
Q ss_pred cccCCCccccccccccccCCc-cc----cCccccccccc--cccCCCCCCCCeEEEEeCC---Ccccc-cccccCCHHHH
Q 000162 75 MQYRMHPSISFFPNSYFYENK-IR----DAPTVRKRSYE--KRFLPGPMYGPYSFINVFG---GREEF-IEHSCRNMVEV 143 (1987)
Q Consensus 75 ~QYRmhP~Is~f~s~~FY~g~-L~----~~~~v~~~~~~--~~~l~~p~~~pl~fidV~~---g~E~~-~~~S~~N~~Ea 143 (1987)
++||+.|++.+.+|..|=.-. .. ...++...... ......+...+........ +.+.. .........+|
T Consensus 450 ~N~RS~~~vl~avN~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~a 529 (1139)
T COG1074 450 TNYRSTPELLNAVNALFKQAMFAYPGEIDYDPVAELGARNGSPGSVNGEPLPALKFWEEEDDWTAPENEEDEREIADLEA 529 (1139)
T ss_pred cccCCcHHHHHHHHHHHhhhhhhcCCCCCCchhhhhhcccCCCCCCCcccchhhhhhcCcccccCCCCchhHHHHHHHHH
Confidence 999999999999998875321 00 00011110000 0000111011111111100 00000 00023345566
Q ss_pred HHHHHHHHHHHHHhh-----cccCCccEEEEccCHHHHHHHHHHhhh
Q 000162 144 SVVMKILRNLYKAWV-----ESKEKLSIGIVSPYSAQVIAIQEKLGS 185 (1987)
Q Consensus 144 ~~V~~lV~~L~~~~~-----~~~~~~sIgIITPY~aQv~~Ir~~L~~ 185 (1987)
..|...+..+...+. ++.+.++|+|++.-+.++..|++.|++
T Consensus 530 ~~Ia~~L~~~~~~~~~~~~~r~i~~~DIaILVR~~~ea~~i~~aL~~ 576 (1139)
T COG1074 530 RQIAAWLRELIEGEAVLDGERPIRAGDIAVLVRSRNEAAAIERALKK 576 (1139)
T ss_pred HHHHHHHHHHhhCCccccCCCCCChhheEEEeecchhHHHHHHHHHh
Confidence 666666666654321 246678999999999999988877755
No 48
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=98.73 E-value=5.6e-09 Score=144.70 Aligned_cols=94 Identities=19% Similarity=0.122 Sum_probs=59.3
Q ss_pred cccchhhhHhHHHhhcccCCChhhHhhhhhhccccccccCcccCHHHHHhhcc-----CCcEEEEcCCCCChhHHH--HH
Q 000162 472 SYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF-----PRSTFILGRSGTGKTTIL--TM 544 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~~~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI--Ii 544 (1987)
+..|..|+..+...-. ...+ ++.. .+..+.+.|++.|++||.. .++++|+|+|||||||++ ++
T Consensus 804 l~~E~~Il~~~~~G~g--~~~p-l~~~-------~~~~~~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~ 873 (1623)
T PRK14712 804 YEAEKSILRHILEGKE--AVTP-LMER-------VPGELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVM 873 (1623)
T ss_pred HHHHHHHHHHHHhcCC--CCCc-hhhh-------hhhhhhcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHH
Confidence 5578888887765432 2222 1121 2234446899999999987 479999999999999998 66
Q ss_pred HHHhhhhhh-hhhhccccCCcc-----------chhHHhhhcc
Q 000162 545 KLFQNEKHH-RMAKEQFDGVNN-----------SLTLHTSWEV 575 (1987)
Q Consensus 545 kl~~~~~ra-a~a~~~l~~~~~-----------AaTIHrLLe~ 575 (1987)
++++..... .....++.|+++ +.|||++|..
T Consensus 874 ~~~~~l~e~~g~~V~glAPTgkAa~~L~e~Gi~A~TIasfL~~ 916 (1623)
T PRK14712 874 SAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHD 916 (1623)
T ss_pred HHHHHHhhccCceEEEEechHHHHHHHHHhCchHhhHHHHhcc
Confidence 665321000 011222334443 4499999985
No 49
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=98.71 E-value=7.6e-08 Score=134.77 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=59.6
Q ss_pred CCCcEEEEecCCCCChhhH--hhhccC---C-------CcceEEEEecCCCCCcccccccccccccCccHHHHHHhC---
Q 000162 2 EQLKFVVIDEAAQLKESES--AIPLQL---P-------CIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL--- 66 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~--LipL~l---~-------~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~--- 66 (1987)
.+|++|+|||+...+..+. +.+|.- . ..+.+++|||++| .|. ...|.+..+|.++...
T Consensus 390 ~r~~~iLVDEFQDTs~~Q~~il~~L~~~~~~g~~~~~~~~~~lf~VGD~kQ--SIY-----~FRGAd~~~f~~~~~~~~~ 462 (1141)
T TIGR02784 390 RGIDHILVDEAQDTSPEQWDIIQALAEEFFSGEGARSGVERTIFAVGDEKQ--SIY-----SFQGADPDRFAEERREFNR 462 (1141)
T ss_pred cCCCEEEEECCcCCCHHHHHHHHHHHHhhcccccccCCCCCeEEEEeCCcc--cCc-----cccCCCHHHHHHHHHHHHH
Confidence 4799999999999987764 333421 0 1368999999999 332 2334455666654321
Q ss_pred -------CCCceecccccCCCccccccccccccC
Q 000162 67 -------GHPKHLLSMQYRMHPSISFFPNSYFYE 93 (1987)
Q Consensus 67 -------g~p~~~L~~QYRmhP~Is~f~s~~FY~ 93 (1987)
......|+++||++|.|.++.|..|-.
T Consensus 463 ~~~~~~~~~~~~~L~~NyRS~~~Il~~~N~lf~~ 496 (1141)
T TIGR02784 463 KVRAVGAKFEDLSLNYSFRSTPDVLAAVDLVFAD 496 (1141)
T ss_pred hhhhccCCceEeeCCcCCCChHHHHHHHHHHHhC
Confidence 123578999999999999999988854
No 50
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.71 E-value=2.8e-07 Score=110.36 Aligned_cols=177 Identities=21% Similarity=0.304 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhcccchh---HHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 846 KSRGIKLFYENNYEMATICFEKAKDTYWE---GRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 846 kklA~~l~~~g~ye~A~k~F~rAgd~~la---~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
.+.|..+-..++|+.|..||.+|++++.. ....+..+..++......++..+...|.+|.++|.+.|+++.|++++.
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34444444459999999999999987553 122233344556666667888888999999999999999988877764
Q ss_pred H-------h-CCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 923 D-------L-GEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 923 k-------a-GdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
+ . |++++|++.| .+++++|+..+....|.+++.++ +.++.+.++|++|+.+.++...
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y---------~~A~~~y~~e~~~~~a~~~~~~~------A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYY---------QKAAELYEQEGSPHSAAECLLKA------ADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHH---------HHHHHHHHHTT-HHHHHHHHHHH------HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH---------HHHHHHHHHCCChhhHHHHHHHH------HHHHHHhCCHHHHHHHHHHHHH
Confidence 3 2 4555555554 45777777777666555555433 3456666666666666655443
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHH
Q 000162 995 HVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMD 1044 (1987)
Q Consensus 995 ~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d 1044 (1987)
..... . ......++++-.+..+++..||+..|-+.+..+.+.+
T Consensus 184 ~~l~~-~------l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 184 KCLEN-N------LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp TCCCH-C------TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred Hhhcc-c------ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 32111 1 1223455676677889999999999999888766554
No 51
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.71 E-value=2.3e-09 Score=108.60 Aligned_cols=50 Identities=40% Similarity=0.561 Sum_probs=36.5
Q ss_pred CceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhhhhhhcccccccCcEEeccccc
Q 000162 718 QALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNEAKHNVLCPELKQLYVAITRTR 797 (1987)
Q Consensus 718 ~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAK 797 (1987)
.++++|+|+|||||||.|++++.... .+. ....++|||||||||
T Consensus 55 ~~~~~Tih~akGle~d~V~v~~~~~~----------------------------------~~~--~~~~~~lYva~TRA~ 98 (104)
T PF13538_consen 55 HAYAMTIHKAKGLEFDAVIVVDPDSS----------------------------------NFD--ELSRRLLYVAITRAK 98 (104)
T ss_dssp CCSEEETGGCTT--EEEEEEEEGGGG----------------------------------SGC--GCHHHHHHHHHTTEE
T ss_pred cEEEEEhHHhcCccccEEEEEcCCcc----------------------------------cCC--chhhccEEeeHhHhh
Confidence 78999999999999999999763210 000 122366999999999
Q ss_pred ccchhc
Q 000162 798 QRLWIW 803 (1987)
Q Consensus 798 k~LvIv 803 (1987)
+.|+||
T Consensus 99 ~~L~iv 104 (104)
T PF13538_consen 99 HELYIV 104 (104)
T ss_dssp EEEEEE
T ss_pred hhhCCC
Confidence 999986
No 52
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=98.71 E-value=4.5e-08 Score=136.20 Aligned_cols=172 Identities=15% Similarity=0.099 Sum_probs=91.3
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCC---CcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLP---CIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYR 78 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~---~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYR 78 (1987)
.+|++|+|||....+..+.-+.-.+. +...+++||||+| .|.. ..|.+...|-...........|+++||
T Consensus 376 ~~y~~ilIDEfQDT~~~Q~~il~~L~~~~~~~~l~~VGDpkQ--sIY~-----FRGAd~~~~l~~~~~~~~~~~L~~NyR 448 (1181)
T PRK10876 376 TRYPVAMIDEFQDTDPQQYRIFRRIYRHQPETALLLIGDPKQ--AIYA-----FRGADIFTYMKARSEVSAHYTLDTNWR 448 (1181)
T ss_pred hCCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEeCCcc--cccc-----CCCCCchHHHHHHhccCCeeECCCCcC
Confidence 47999999999999877653332222 2357999999999 3321 112222222222221234578999999
Q ss_pred CCccccccccccccCCccc------cCcccccc--ccccccC-CCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHH
Q 000162 79 MHPSISFFPNSYFYENKIR------DAPTVRKR--SYEKRFL-PGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKI 149 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~g~L~------~~~~v~~~--~~~~~~l-~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~l 149 (1987)
++|.|.+++|..|-...-. +..++... .....+. .+....++.+... .+... ........|++.+..-
T Consensus 449 S~~~Iv~~~N~lf~~~~~~~~~~~i~~~~v~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~~~~~eA~~iA~~ 525 (1181)
T PRK10876 449 SAPGMVNSVNKLFSQTDDPFLFREIPFIPVKAAGKNQALRFVVKGETQPAMKFWLM-EGEGV--GVGDYQQTMAQQCAAQ 525 (1181)
T ss_pred cCHHHHHHHHHHHhcccccccCCCCCccccccccccccccccccCCCCCceeeeec-CCCcc--CcchHHHHHHHHHHHH
Confidence 9999999999887543210 00001000 0000000 0110122333222 11111 1111234577778777
Q ss_pred HHHHHHHhh------------cccCCccEEEEccCHHHHHHHHHHh
Q 000162 150 LRNLYKAWV------------ESKEKLSIGIVSPYSAQVIAIQEKL 183 (1987)
Q Consensus 150 V~~L~~~~~------------~~~~~~sIgIITPY~aQv~~Ir~~L 183 (1987)
+..++..+. .+....+|+|+++.+.|...+++.|
T Consensus 526 I~~ll~~g~~~~~~~~~~~~~r~~~~~DIAVLvRs~~~a~~i~~aL 571 (1181)
T PRK10876 526 IRDWLQAGQRGEALLMNGDDSRPVRASDITVLVRSRQEAALIRDAL 571 (1181)
T ss_pred HHHHHhcccccceeeccCCCcCCCCcccEEEEEecCchHHHHHHHH
Confidence 777765431 1234568888888877776665444
No 53
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=98.70 E-value=8.2e-08 Score=128.88 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=58.0
Q ss_pred CCCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC--CCCceecccccC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL--GHPKHLLSMQYR 78 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~--g~p~~~L~~QYR 78 (1987)
.+|++|+|||+...+..+.-+.-.+ ...+++++|||+.| .|. ...|.....+.++... +...+.|+++||
T Consensus 208 ~~~~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~Q--sIY-----~fRgA~~~~~~~f~~~~~~~~~i~L~~NyR 280 (726)
T TIGR01073 208 RKFQYIHVDEYQDTNRAQYTLVRLLASRFRNLCVVGDADQ--SIY-----GWRGADIQNILSFEKDYPNATTILLEQNYR 280 (726)
T ss_pred HhCCEEEEEccccCCHHHHHHHHHHhCCCCEEEEEeCCCc--ccc-----ccCCCChHHHHHHHHhCCCCeEEECccCCC
Confidence 3699999999999998775332112 23578999999999 232 1223333444443321 234578999999
Q ss_pred CCccccccccccccC
Q 000162 79 MHPSISFFPNSYFYE 93 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~ 93 (1987)
++|.|..++|..+-.
T Consensus 281 S~~~Il~~an~li~~ 295 (726)
T TIGR01073 281 STKNILQAANEVIEH 295 (726)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999877654
No 54
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=98.62 E-value=1.8e-07 Score=125.29 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHh--CCCCceecccccC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY--LGHPKHLLSMQYR 78 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~--~g~p~~~L~~QYR 78 (1987)
.+|++|+|||+...+..+.-+.-.+ ....++++|||+.| .|. ...|.+...+.++.. .+...+.|+++||
T Consensus 212 ~~~~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~dQ--sIY-----~fRGA~~~~~~~f~~~~~~~~~i~L~~NyR 284 (721)
T PRK11773 212 ERFTHILVDEFQDTNAIQYAWIRLLAGDTGKVMIVGDDDQ--SIY-----GWRGAQVENIQRFLNDFPGAETIRLEQNYR 284 (721)
T ss_pred HhCCEEEEEchhcCCHHHHHHHHHHhCCCCeEEEEecCcc--ccc-----ccCCCChHHHHHHHHhCCCCeEEECCcCCC
Confidence 3689999999999987664322222 23578999999999 332 122333444444433 1345688999999
Q ss_pred CCccccccccccccC
Q 000162 79 MHPSISFFPNSYFYE 93 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~ 93 (1987)
+++.|.+++|..+-.
T Consensus 285 St~~Il~~an~li~~ 299 (721)
T PRK11773 285 STANILKAANALIAN 299 (721)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999877644
No 55
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=98.62 E-value=1.4e-07 Score=132.53 Aligned_cols=85 Identities=21% Similarity=0.142 Sum_probs=59.2
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCCC----cceEEEEecCCCCCcccccccccccccCccHHHHHHhC-------CCCc
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLPC----IQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL-------GHPK 70 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~~----~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~-------g~p~ 70 (1987)
.+|++|+|||.......+.-+.-.+.+ ...+++|||++| .|. ...|.+.++|...... ....
T Consensus 387 ~rf~~ILVDEfQDTn~lQ~~Il~~L~~~~~~~~nLf~VGD~KQ--SIY-----~FRGAdp~lf~~~~~~f~~~~~~~~~~ 459 (1232)
T TIGR02785 387 EKFKEVLVDEYQDTNLLQESILQLLKRGEEDEGNLFMVGDVKQ--SIY-----RFRQADPSLFLEKYHRFAQEGNEHGKR 459 (1232)
T ss_pred hCCCEEEEECCcCCCHHHHHHHHHHhccCCCCCeEEEEcCCcc--hhh-----hhcCCChHHHHHHHHHhhhhccCCceE
Confidence 479999999999998776422211222 368999999999 232 2334456666544321 1246
Q ss_pred eecccccCCCccccccccccccC
Q 000162 71 HLLSMQYRMHPSISFFPNSYFYE 93 (1987)
Q Consensus 71 ~~L~~QYRmhP~Is~f~s~~FY~ 93 (1987)
+.|.++||++|.|.++.|..|..
T Consensus 460 i~L~~NfRS~~~Il~~~N~lF~~ 482 (1232)
T TIGR02785 460 IDLAENFRSRKEVLDTTNYLFKQ 482 (1232)
T ss_pred EECCcCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999988854
No 56
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=98.61 E-value=5.3e-09 Score=126.20 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=58.7
Q ss_pred eecccccCCCccccccccccccCCccccC-ccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHH
Q 000162 71 HLLSMQYRMHPSISFFPNSYFYENKIRDA-PTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKI 149 (1987)
Q Consensus 71 ~~L~~QYRmhP~Is~f~s~~FY~g~L~~~-~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~l 149 (1987)
+.|+++||++|.|.++.|..|=. ..... ......... ........++.++.. .....|+..+.+.
T Consensus 1 i~L~~NyRS~~~Iv~~~N~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~e~~~i~~~ 66 (351)
T PF13361_consen 1 ITLTTNYRSSPNIVDFANRLFEN-ILPNDNKDRYEKEIQ--SAENSEDGKISIIEF-----------DNEEEEAEYIAEE 66 (351)
T ss_dssp EEE-EESSS-HHHHHHHHHHHCC----TTSSSSCCCEEE--ESSTCEESSEEEEEE-----------SSHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHHh-hhhhhccchhhhhhc--cccccccCCceeecc-----------CCHHHHHHHHHHH
Confidence 46999999999999999988711 00000 000000000 000111123344433 1234588889888
Q ss_pred HHHHHHHhhcccCCccEEEEccCHHHHHHHHHHhhhh
Q 000162 150 LRNLYKAWVESKEKLSIGIVSPYSAQVIAIQEKLGSK 186 (1987)
Q Consensus 150 V~~L~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~ 186 (1987)
+..+... +.+..+|+|++..+.|...|.+.|.+.
T Consensus 67 I~~l~~~---~~~~~diAVL~R~~~~~~~i~~~L~~~ 100 (351)
T PF13361_consen 67 IKELIRN---GIPPSDIAVLVRTNSQIKEIEDALKEA 100 (351)
T ss_dssp HHHHHHT---TS-GGGEEEEESSGGHHHHHHHHHHHT
T ss_pred HHHHhhc---CCCcccEEEEEECchhHHHHHHHHhhh
Confidence 8887765 346789999999999999999999764
No 57
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=98.57 E-value=2e-07 Score=124.98 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=58.2
Q ss_pred CCCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC--CCCceecccccC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL--GHPKHLLSMQYR 78 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~--g~p~~~L~~QYR 78 (1987)
.+|++|+|||+...+..+.-+.-.+ ....++++|||+.| .|. ...|.+...+.++... +...+.|+++||
T Consensus 207 ~~~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~Q--sIY-----~fRGA~~~~i~~f~~~~~~~~~~~L~~NyR 279 (715)
T TIGR01075 207 ERFTHILVDEFQDTNKIQYAWIRLLAGNTGNVMIVGDDDQ--SIY-----GWRGAQVENIQKFLKDFPGAETIRLEQNYR 279 (715)
T ss_pred HhCCEEEEEccccCCHHHHHHHHHHhCCCCeEEEEeCCcc--ccc-----ccCCCCHHHHHHHHHhCCCCeEEECcccCC
Confidence 3689999999999987775333222 33578999999999 332 1223334444444331 234688999999
Q ss_pred CCccccccccccccC
Q 000162 79 MHPSISFFPNSYFYE 93 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~ 93 (1987)
+++.|.+++|..+-.
T Consensus 280 S~~~Il~~an~li~~ 294 (715)
T TIGR01075 280 STANILAAANALIAN 294 (715)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999877644
No 58
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=3.3e-06 Score=105.34 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=112.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhcccchhH--------HHHHhhhHHhhhhhhc-CCh----------HHHHHHHHHHHH
Q 000162 846 KSRGIKLFYENNYEMATICFEKAKDTYWEG--------RSKATGLKAASDHIRS-SNP----------LEANVILREAAN 906 (1987)
Q Consensus 846 kklA~~l~~~g~ye~A~k~F~rAgd~~la~--------la~A~~l~~aA~~l~s-~~~----------~ea~~~y~eAAe 906 (1987)
.++|+.-..-|+|++|.+.|..+..-.++. +...+.+.+.+..-.. ... ......+++|++
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888899999999999887754432 1222222211100000 000 112345889999
Q ss_pred HHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC-hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHH
Q 000162 907 IFEAIGKADSAAKCFYDLGEYERAGKIYEERCG-KPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIG 985 (1987)
Q Consensus 907 lYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~-~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~A 985 (1987)
+|..+|..+.-++|+.++.+|+..-.+.+.+.. ..++...|+.|...|--+.|++.|.+.++..+|+..|...++|.+|
T Consensus 818 yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 818 YYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887777776554 4779999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 000162 986 LQYINYWK 993 (1987)
Q Consensus 986 lrLi~qy~ 993 (1987)
+++++++.
T Consensus 898 velaq~~~ 905 (1189)
T KOG2041|consen 898 VELAQRFQ 905 (1189)
T ss_pred HHHHHhcc
Confidence 99996543
No 59
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=98.51 E-value=1.9e-08 Score=134.45 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=47.3
Q ss_pred EEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEecccccccEEEEcchhhhcc
Q 000162 195 VKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRARHCLWILGSERTLNH 255 (1987)
Q Consensus 195 V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVALTRAK~~LiIVGn~~~L~~ 255 (1987)
-.+.|||++||+|+|.|||..++ .. -+.+++.+|||+||||+.++++|++..+..
T Consensus 622 ayA~TIHKsQGSef~~v~v~l~~-~~-----~~l~r~l~YtAiTRar~~l~l~~~~~~~~~ 676 (696)
T COG0507 622 AYAMTIHKSQGSEFDRVIVLLPS-HS-----PMLSRELLYTAITRARDRLILYGDEKAFAA 676 (696)
T ss_pred heeeeEecccCCCCCeEEEEcCC-Cc-----hhhhhhHHHHHhhhhheeEEEEcChHHHHH
Confidence 46899999999999999999987 32 156799999999999999999998877753
No 60
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=3.4e-06 Score=111.53 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=126.2
Q ss_pred hcCHHHHHHHHHHhcccch---hHHHHHhhhHHhhhhhhcCChHH-------------HHHHHHHHHHHHHHcCCHHHHH
Q 000162 855 ENNYEMATICFEKAKDTYW---EGRSKATGLKAASDHIRSSNPLE-------------ANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 855 ~g~ye~A~k~F~rAgd~~l---a~la~A~~l~~aA~~l~s~~~~e-------------a~~~y~eAAelYe~~G~~dkAA 918 (1987)
.++|+.|+.+-.++|.... ....+..++...|..+-..+++. ....|++||-+|+.+|+.++|.
T Consensus 893 L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl 972 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKAL 972 (1265)
T ss_pred HHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHH
Confidence 3889999999888885322 34555556655555544444332 2345899999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhcC-h-hHH---HHHHHHHHHcCCHHHHHHHHHh-cCCHHHHHHHHHhcCChHHHHHHHHHh
Q 000162 919 KCFYDLGEYERAGKIYEERCG-K-PEL---EKAGECFFLAGQYKHAAEVYAR-GNFFSECLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~-~-~ll---~~aAe~fE~agqy~kAAeLYeK-aGd~~kAIemy~kak~wd~AlrLi~qy 992 (1987)
++|..+|+|++|+.+..+... + +.. ...+.-+.+.+++.+||++-.. ++++++|+..|+++..|++|++++..+
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhc
Confidence 999999999999999875322 2 222 5667777788888888887655 699999999999999999999999887
Q ss_pred hhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 000162 993 KQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQL 1027 (1987)
Q Consensus 993 ~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylkl 1027 (1987)
.+....+....+.+.++....-.+++.+...|.++
T Consensus 1053 ~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~y 1087 (1265)
T KOG1920|consen 1053 KRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKY 1087 (1265)
T ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76555554555555555555555666666666554
No 61
>PRK13909 putative recombination protein RecB; Provisional
Probab=98.37 E-value=1.8e-07 Score=128.02 Aligned_cols=88 Identities=27% Similarity=0.426 Sum_probs=49.7
Q ss_pred ceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhcc--C--CCCCCCCC-----hhhhhhhcccccccCc
Q 000162 719 ALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLD--S--TLPASFPS-----FNEAKHNVLCPELKQL 789 (1987)
Q Consensus 719 a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~--~--~~~s~~p~-----~d~~~~~~L~~ELnLL 789 (1987)
..|||||+|||||||+||+.|........ ....+.+. ...++.. . .....++. ........+..++|+|
T Consensus 608 V~imTIHkSKGLEfpvVil~d~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~rlL 685 (910)
T PRK13909 608 VQIMTVHKSKGLEFEHVIVCDRLGKPNSD-SSNLLFEY-DGIELWQIYYRIKGRENFDKDYARALEKEKALKYEEEINVL 685 (910)
T ss_pred eEEEEeeccCCCCCcEEEEccCccCCCCC-CCcEEEcc-CCCCcceeccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhH
Confidence 35999999999999999998854211101 11111110 0000000 0 00001111 1122234556778999
Q ss_pred EEecccccccchhcccccc
Q 000162 790 YVAITRTRQRLWIWENMEE 808 (1987)
Q Consensus 790 YVAITRAKk~LvIve~~~~ 808 (1987)
|||+|||+++|+|+-..+.
T Consensus 686 YVAlTRA~~~L~i~~~~~~ 704 (910)
T PRK13909 686 YVAFTRAKNSLIVVKKDES 704 (910)
T ss_pred heeccchhhceEEEecccc
Confidence 9999999999999998654
No 62
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=98.36 E-value=8.2e-08 Score=134.72 Aligned_cols=91 Identities=26% Similarity=0.405 Sum_probs=53.2
Q ss_pred CCceeeeeecccCCCCCeEEEeecCCCCCcc--hhhHHHHHHHH-HhhhccCCCCCCCCChh------hhhhhccccccc
Q 000162 717 KQALVLTIVESKGLEFQDVLLYDFFGSSPLK--NQWRVVYEYMK-EQALLDSTLPASFPSFN------EAKHNVLCPELK 787 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~--~~~~~l~~~~k-~q~~~~~~~~s~~p~~d------~~~~~~L~~ELn 787 (1987)
+...+||||+|||||||+||+.++...-... ..+-.+..... .-.+.++.....+|... ......+..|++
T Consensus 781 daV~IMTIHkSKGLEFPvVfl~~l~~~fn~~d~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Ee~R 860 (1232)
T TIGR02785 781 NAVRLMTIHKSKGLEFPVVFVLGMGKQFNKQDLNSSYLLNRQLGLGITYIDPQERLSYPSLPKVAIKQKMKRELLSEEMR 860 (1232)
T ss_pred CeEEEEeeecccCCCCCEEEEeCCCCCCCccccccceEeccccCCCCceecchhccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999999865321111 01111110000 00011111222344321 222345678899
Q ss_pred CcEEecccccccchhccccc
Q 000162 788 QLYVAITRTRQRLWIWENME 807 (1987)
Q Consensus 788 LLYVAITRAKk~LvIve~~~ 807 (1987)
+||||+||||++|+|+-...
T Consensus 861 lLYVAlTRAke~Lil~g~~~ 880 (1232)
T TIGR02785 861 VLYVALTRAKEKLILVGSVK 880 (1232)
T ss_pred HHHhhhhhhhheEEEEecHH
Confidence 99999999999999998753
No 63
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.36 E-value=5.5e-07 Score=112.92 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=31.7
Q ss_pred cccCcccCHHHHHhhcc----CCcEEEEcCCCCChhHHH
Q 000162 508 LDLPFEVTDEQLEMILF----PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 508 ~d~~I~l~~eQk~AI~~----~~~~iItGgPGTGKTTVI 542 (1987)
.-++..+++.|++||.. ..+++|-|+||||||+++
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL 218 (649)
T ss_pred ccCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeH
Confidence 55678899999999999 479999999999999998
No 64
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=98.32 E-value=2.6e-06 Score=120.46 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCCChhhHhhhccCC--CcceEEEEecCCCCCcccccccccccccCccHHHHHHh-CCCCceecccccCC
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLP--CIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY-LGHPKHLLSMQYRM 79 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~--~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~-~g~p~~~L~~QYRm 79 (1987)
+-+++|||||||+....+...+... ...++|||||+.|||||-. ...|..|+. .+++.+.|++.+|.
T Consensus 1062 ~~~llIVDEaSMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~sV~a----------G~~f~~l~~~~~i~~~~L~eI~RQ 1131 (1747)
T PRK13709 1062 SNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAP----------GQPFRLMQTRSAADVAIMKEIVRQ 1131 (1747)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhcCCCEEEEecchHhcCCCCC----------ChHHHHHHHhCCCCeEEeCeEEcC
Confidence 3589999999999977765554322 2479999999999999942 267777776 57899999999999
Q ss_pred Ccccc
Q 000162 80 HPSIS 84 (1987)
Q Consensus 80 hP~Is 84 (1987)
.+.+-
T Consensus 1132 ~~~lr 1136 (1747)
T PRK13709 1132 TPELR 1136 (1747)
T ss_pred cHHHH
Confidence 87443
No 65
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=3.5e-05 Score=102.34 Aligned_cols=161 Identities=14% Similarity=0.087 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCCHHHHHHHHHHhcC--hhHHHHHHHHHHHcCCHHHHHHHHHhcCCH
Q 000162 894 PLEANVILREAANIFEAIG--KADSAAKCFYDLGEYERAGKIYEERCG--KPELEKAGECFFLAGQYKHAAEVYARGNFF 969 (1987)
Q Consensus 894 ~~ea~~~y~eAAelYe~~G--~~dkAAk~y~kaGdyekA~eLy~e~~~--~~ll~~aAe~fE~agqy~kAAeLYeKaGd~ 969 (1987)
...+.+.|..|..+.-++| .++.+..+-.+-|.|.+|..+|+-... +..+...|+++.+.+.|++||-+|+++|..
T Consensus 889 ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl 968 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL 968 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH
Confidence 3457789999999999998 789999999999999999999864111 345778999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHH
Q 000162 970 SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNF 1049 (1987)
Q Consensus 970 ~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~f 1049 (1987)
++|+++|...++|++|+.++.+...... +....+.+.... . ...+.+. +|++.
T Consensus 969 ekAl~a~~~~~dWr~~l~~a~ql~~~~d----------e~~~~a~~L~s~---L-~e~~kh~-------------eAa~i 1021 (1265)
T KOG1920|consen 969 EKALKAYKECGDWREALSLAAQLSEGKD----------ELVILAEELVSR---L-VEQRKHY-------------EAAKI 1021 (1265)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhcCCHH----------HHHHHHHHHHHH---H-HHcccch-------------hHHHH
Confidence 9999999999999999999955443211 122222111111 1 1111111 12222
Q ss_pred -HhhcCCHHHHHHHHHHhCCHHHHHHHHHHcCC
Q 000162 1050 -LKSKSCFDELLVLEEEAGNFMDAANIARLTGD 1081 (1987)
Q Consensus 1050 -L~k~~~~dEaiell~kaG~f~EA~~iAkq~Gd 1081 (1987)
++-.++..+|+.+|+++..|++|.++|..+++
T Consensus 1022 l~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1022 LLEYLSDPEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHHhcCHHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 22356788999999999999999999998873
No 66
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=98.29 E-value=2.3e-07 Score=129.21 Aligned_cols=88 Identities=31% Similarity=0.397 Sum_probs=50.3
Q ss_pred CCceeeeeecccCCCCCeEEEeecCCCCCcch--hhHHHHHHHHHhhhccCCCCCCCCCh------hhhhhhcccccccC
Q 000162 717 KQALVLTIVESKGLEFQDVLLYDFFGSSPLKN--QWRVVYEYMKEQALLDSTLPASFPSF------NEAKHNVLCPELKQ 788 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~--~~~~l~~~~k~q~~~~~~~~s~~p~~------d~~~~~~L~~ELnL 788 (1987)
+.+-|||||+|||||||.|+|.+..+...... .+...++.... .+.. ..++++.. ....-..+..++++
T Consensus 742 ~~VrImTIHkSKGLEfPiVflp~~~~~~~~~~~~~~~~~~d~~~~-~~~~--~~~~~~~~~~~~~k~~~~~e~~~E~~RL 818 (1139)
T COG1074 742 DLVRIMTIHKSKGLEFPIVFLPFILSKRFNDSDVPLLVYYDGLRF-ELFD--DLKSYPTPESQANKELAEEEALAEELRL 818 (1139)
T ss_pred CeEEEEEEeccCCCCCCEEEecCCCCcccccccccceeecCCCce-eeEe--ccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999977333211110 11111110000 0000 00122221 11223456677999
Q ss_pred cEEecccccccchhccccc
Q 000162 789 LYVAITRTRQRLWIWENME 807 (1987)
Q Consensus 789 LYVAITRAKk~LvIve~~~ 807 (1987)
||||+||||++|||+=...
T Consensus 819 LYVAlTRAk~~L~l~g~~~ 837 (1139)
T COG1074 819 LYVALTRAKEQLILIGAPS 837 (1139)
T ss_pred HHHHHHHHHHheEEEeecc
Confidence 9999999999999987654
No 67
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=98.28 E-value=2.1e-07 Score=130.50 Aligned_cols=91 Identities=23% Similarity=0.180 Sum_probs=49.8
Q ss_pred CCceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHH-HHHHHhhh--ccCC--CCCC-CCC-----hhhhhhhccccc
Q 000162 717 KQALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVY-EYMKEQAL--LDST--LPAS-FPS-----FNEAKHNVLCPE 785 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~-~~~k~q~~--~~~~--~~s~-~p~-----~d~~~~~~L~~E 785 (1987)
+...|||||+|||||||+|||.+.............+. ......+. .... .... .|. ...........+
T Consensus 774 daV~ImTIH~SKGLEfpvV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 853 (1141)
T TIGR02784 774 DEVRVMTVHGAKGLEAPVVFLVDTGSAPFASQHAPKLLFTGGSGEASDGKAPLWRPPSAFDPALSAAARERLKERAEDEY 853 (1141)
T ss_pred CeEEEEeccccCCCCCCEEEEeCCCCCCCCccccccccccccCCCccccccccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999988743211111101110 00000000 0000 0000 111 111222345677
Q ss_pred ccCcEEecccccccchhccccc
Q 000162 786 LKQLYVAITRTRQRLWIWENME 807 (1987)
Q Consensus 786 LnLLYVAITRAKk~LvIve~~~ 807 (1987)
+|+||||+||||++|+|+-..+
T Consensus 854 ~RLLYVAlTRA~~~L~l~g~~~ 875 (1141)
T TIGR02784 854 RRLLYVAMTRAEDRLIVCGYRG 875 (1141)
T ss_pred hhHHHHhhhhhhheeEEEeecC
Confidence 8999999999999999987643
No 68
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.26 E-value=1.2e-05 Score=96.50 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHcC--------------C-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000162 1055 CFDELLVLEEEAGNFMDAANIARLTG--------------D-ILLTADLLQKAGNFKEACNLTLNYVLS 1108 (1987)
Q Consensus 1055 ~~dEaiell~kaG~f~EA~~iAkq~G--------------d-~l~Aae~L~kAg~fdeA~rL~l~~~~~ 1108 (1987)
++..++.++.+.|+|++|..++.+.+ + ++.++=++.-.|++..|.+.+-.|+-.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34456677777777777777776541 1 122233344457887787776666543
No 69
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=98.24 E-value=3.1e-06 Score=118.28 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=59.3
Q ss_pred CCcEEEEecCCCCChhhHhhhccC--CCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC-CCCceecccccCC
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQL--PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL-GHPKHLLSMQYRM 79 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l--~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~-g~p~~~L~~QYRm 79 (1987)
+.+++|||||||+....+...+.+ ....++|||||+.|||||- ..+.|+-++.. +.+...|++.+|.
T Consensus 930 ~~~llIVDEASMV~~~~m~~ll~~~~~~garvVLVGD~~QL~sV~----------aG~~F~~lq~~~~~~ta~L~eI~RQ 999 (1623)
T PRK14712 930 SNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIA----------PGQPFRLQQTRSAADVVIMKEIVRQ 999 (1623)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhhCCCEEEEEcchhhcCCCC----------CCHHHHHHHHcCCCCeEEeCeeecC
Confidence 458999999999998776443322 2237999999999999995 34688888875 6899999999999
Q ss_pred Ccccccccc
Q 000162 80 HPSISFFPN 88 (1987)
Q Consensus 80 hP~Is~f~s 88 (1987)
.|++-..+.
T Consensus 1000 ~~elr~AV~ 1008 (1623)
T PRK14712 1000 TPELREAVY 1008 (1623)
T ss_pred CHHHHHHHH
Confidence 887665543
No 70
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.19 E-value=4.7e-07 Score=125.94 Aligned_cols=83 Identities=25% Similarity=0.262 Sum_probs=47.1
Q ss_pred CCceeeeeecccCCCCCeEEEeecCCCCCcc-hhhHHHHHHHHHhhhccCCCCCCCCC-hhhhhhhcccccccCcEEecc
Q 000162 717 KQALVLTIVESKGLEFQDVLLYDFFGSSPLK-NQWRVVYEYMKEQALLDSTLPASFPS-FNEAKHNVLCPELKQLYVAIT 794 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~-~~~~~l~~~~k~q~~~~~~~~s~~p~-~d~~~~~~L~~ELnLLYVAIT 794 (1987)
+...|||||+|||||||+|++.++....... ..|..-. ..+...... ...+. ........+..+++|||||+|
T Consensus 651 ~aV~ImTIHkSKGLEfPvVflp~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~e~~~E~lRLLYVAlT 725 (1087)
T TIGR00609 651 ELVKIVTIHKSKGLEYPIVFLPFITDAKKSNFASLHDQH---SHEYQLYDF--NQSEENQKLARVERLAEDLRLLYVALT 725 (1087)
T ss_pred ccEEEEEEEccCCCCCCEEEEeccccccCCccceeeecc---CCceeecCC--cccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4567999999999999999997764321100 0000000 000000000 00000 112223456788999999999
Q ss_pred cccccchhcc
Q 000162 795 RTRQRLWIWE 804 (1987)
Q Consensus 795 RAKk~LvIve 804 (1987)
||+.+|+|.=
T Consensus 726 RA~~~l~l~~ 735 (1087)
T TIGR00609 726 RAKKQLFIGI 735 (1087)
T ss_pred HHhHeeEEEe
Confidence 9999999953
No 71
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.14 E-value=0.00084 Score=90.45 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc----CC----HHHHHHHHHHc
Q 000162 1021 ALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT----GD----ILLTADLLQKA 1092 (1987)
Q Consensus 1021 A~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~----Gd----~l~Aae~L~kA 1092 (1987)
+..|...|+++.|++.++..-... .....+...+.++...|++++|.+.+.+. .+ +...+.++...
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRA------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 455666677777766655321110 00111223455666778888887766653 11 12226667777
Q ss_pred CCHHHHHHHHHHH
Q 000162 1093 GNFKEACNLTLNY 1105 (1987)
Q Consensus 1093 g~fdeA~rL~l~~ 1105 (1987)
|++++|...+.+-
T Consensus 784 g~~~~A~~~~~~~ 796 (899)
T TIGR02917 784 KDYDKAIKHYRTV 796 (899)
T ss_pred cCHHHHHHHHHHH
Confidence 8888888875543
No 72
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=98.12 E-value=5.3e-06 Score=108.17 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=59.3
Q ss_pred cEEEEecChhHHHHHHhhhcCCc-eeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChh
Q 000162 697 EQVILVRDDCVRKEISNYVGKQA-LVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFN 775 (1987)
Q Consensus 697 ~~vIiVr~d~~k~~l~~~Lg~~a-~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d 775 (1987)
+..|+++.++..+-+...+.... =|-||.+=||-+=|.||+ -|.-.+.- ..
T Consensus 975 dIGIis~YraQv~Li~~~l~~~~lEinTVD~yQGRDKd~Iiv-Sfvrsn~~----~~----------------------- 1026 (1100)
T KOG1805|consen 975 DIGIISPYRAQVELIRKILSSAVLEINTVDRYQGRDKDCIIV-SFVRSNKK----SK----------------------- 1026 (1100)
T ss_pred HeeeeehHHHHHHHHHhhccccceeeeehhhhcCCCCCEEEE-EEEecCCc----cc-----------------------
Confidence 56699999987766666653222 267999999999987666 33211100 00
Q ss_pred hhhhhcccccccCcEEecccccccchhccccc--ccCCcHHHHHHh
Q 000162 776 EAKHNVLCPELKQLYVAITRTRQRLWIWENME--EFSKPMFDYWKK 819 (1987)
Q Consensus 776 ~~~~~~L~~ELnLLYVAITRAKk~LvIve~~~--~~s~Pm~~ywek 819 (1987)
-..|-.+.+.|=||+||||+.|+++-..+ ....|+.++...
T Consensus 1027 ---~~eLLkD~rRlNVAlTRAK~KLIlvGs~s~l~~~~~~~~l~~~ 1069 (1100)
T KOG1805|consen 1027 ---VGELLKDWRRLNVALTRAKKKLILVGSKSTLESYPPFRQLLKL 1069 (1100)
T ss_pred ---HHHHHHhhHHHHHHHHhhhceEEEEecccccccCchHHHHHhh
Confidence 00111223558899999999999999876 445566666544
No 73
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=98.10 E-value=7.3e-07 Score=124.46 Aligned_cols=78 Identities=27% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhh---hccCCCCCCCCC-hhhhhhhcccccccCcEEe
Q 000162 717 KQALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQA---LLDSTLPASFPS-FNEAKHNVLCPELKQLYVA 792 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~---~~~~~~~s~~p~-~d~~~~~~L~~ELnLLYVA 792 (1987)
+.+.|+|||+|||||||+|++..+.....- . ..++.. .++ ..+-.. .+. ........+..|++|||||
T Consensus 734 ~~V~ImTIH~SKGLEfPvVflp~l~~~~~~--~-~~~~h~--~~~~~~~~~~~~---~~~~~~~~~~E~l~Ee~RLlYVA 805 (1181)
T PRK10876 734 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQ--D-QAFYHD--RHSFEAVLDLNA---AEESVALAEEERLAEDLRLLYVA 805 (1181)
T ss_pred CcEEEEEEeccCCcCCCEEEecccccccCC--c-cceeec--CCCCeeEeecCC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999765310000 0 000000 000 000000 000 0011123577889999999
Q ss_pred cccccccchh
Q 000162 793 ITRTRQRLWI 802 (1987)
Q Consensus 793 ITRAKk~LvI 802 (1987)
+||||++|+|
T Consensus 806 lTRAk~~l~l 815 (1181)
T PRK10876 806 LTRSVWHCSL 815 (1181)
T ss_pred hhhHhhhhee
Confidence 9999999998
No 74
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=98.08 E-value=3.4e-06 Score=105.58 Aligned_cols=206 Identities=22% Similarity=0.188 Sum_probs=132.2
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHh----CCCCceecccccC
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY----LGHPKHLLSMQYR 78 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~----~g~p~~~L~~QYR 78 (1987)
.+..+|||||...+.-++..-=.+.++..+-++||..|- ++. ..-..+..+|+.. ..+..+.|..+||
T Consensus 528 ~~kh~vIDeaqdys~~q~~~~r~l~~~as~tivgd~gq~--i~~------~~~e~~~~e~~~~~fed~~~e~v~l~~syr 599 (747)
T COG3973 528 RLKHTVIDEAQDYSRFQFTDNRTLAERASMTIVGDYGQV--IYD------EAQELSPMERMDVFFEDPSFEYVGLIASYR 599 (747)
T ss_pred cccceeechhhhcchhhhHHHhhhhhhccceEeccCCce--ehh------hhcccCHHHHHHHHHhCCCchhhhhhhhhc
Confidence 356799999988876665444446677899999999993 110 0112344555433 2355688999999
Q ss_pred CCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhh
Q 000162 79 MHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWV 158 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~ 158 (1987)
++.+|.+|++...=+ ..+..+.. -....|.+.. +-.|..=++.+..++..+-+.
T Consensus 600 St~eI~efan~~l~d--~~~~~p~~----------rsge~p~~i~------------~~~ne~l~qr~~~ii~~mkk~-- 653 (747)
T COG3973 600 STAEIDEFANSLLPD--RFRIHPLT----------RSGEKPAVIM------------SVANEELVQRNPDIIPRMKKR-- 653 (747)
T ss_pred ChHHHHHHHHHhccC--CCccchhh----------cCCCCceeee------------ccchHHHHHhhHHHHHHHHhc--
Confidence 999999999865431 11110000 0001122222 223444455555566665443
Q ss_pred cccCCccEEEEccCHHHHHHHHHHhhhhhh--------cccCccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCC
Q 000162 159 ESKEKLSIGIVSPYSAQVIAIQEKLGSKYE--------KIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTP 230 (1987)
Q Consensus 159 ~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~--------~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~ 230 (1987)
...+||||||...|...+...|+..-. ..-.....|--|+-..|.|||.||+.-.- ... .--.+.
T Consensus 654 ---~~etiaVi~kt~~d~~~~~d~lre~~~~r~I~k~nq~f~~~~~vipvy~aKGlEFD~viv~d~s-~~e---~te~~~ 726 (747)
T COG3973 654 ---GSETIAVICKTDHDCKAVMDSLREKDSQRTIAKENQRFHHGSDVIPVYDAKGLEFDHVIVVDPS-IVE---ETEQDL 726 (747)
T ss_pred ---CCCceEEECCcHHHHHHHHHHHhhcchhhHHHhhcccccCCceEEEeeecccceeeeEEEecch-hhc---ccccch
Confidence 457899999999999999988875311 11123567889999999999998875432 111 112457
Q ss_pred CceEEecccccccEEEEcc
Q 000162 231 QRINVALTRARHCLWILGS 249 (1987)
Q Consensus 231 nRLNVALTRAK~~LiIVGn 249 (1987)
+-|+||+|||-+.|+|+|-
T Consensus 727 r~LYva~TRAlh~l~if~~ 745 (747)
T COG3973 727 RDLYVAVTRALHSLYIFGE 745 (747)
T ss_pred hhHHHHHHHHHHHHHHhhc
Confidence 8899999999999999874
No 75
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.06 E-value=0.00059 Score=90.56 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKA 868 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rA 868 (1987)
..++..|..+|..++..|+|+.|+.+|.++
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~a 186 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAA 186 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345666777777777777777777777765
No 76
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.02 E-value=0.00089 Score=90.23 Aligned_cols=176 Identities=14% Similarity=0.086 Sum_probs=96.4
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcC----
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIG---- 912 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G---- 912 (1987)
..++..|..+|..+...|+++.|..+|.++-. +.........+. .....+.+.+|..+|.++-
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD-----------AYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH-----------HHHHcCCHHHHHHHHHHHHhcCC
Confidence 34677888888888888889998888887532 111000000000 0011222333333333211
Q ss_pred ----CHHHHHHHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhcC-------CHHHHHHHH
Q 000162 913 ----KADSAAKCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARGN-------FFSECLAVC 976 (1987)
Q Consensus 913 ----~~dkAAk~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKaG-------d~~kAIemy 976 (1987)
-....+.++...|+++.|.+++..... ...+...|..+...|+|++|.+.|.++- .+...+.++
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL 746 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 012235555566666666666554211 2345667778888888888888887751 223345567
Q ss_pred HhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 977 SRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 977 ~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
.+.+++++|.+.++++.+....+. ......+..|...|+++.|++.++.
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~--------------~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDA--------------VLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH--------------HHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 777788888777766554332211 1112234556666666666665553
No 77
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.98 E-value=0.0004 Score=93.47 Aligned_cols=236 Identities=12% Similarity=0.098 Sum_probs=156.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchh--HHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHc---C--
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWE--GRSKATGLKAASDHIRSSNPLEANVILREAANIFEAI---G-- 912 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la--~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~---G-- 912 (1987)
.+..-|..+...+.+.|++++|.++|.+....... ......-+. .....+.+++|.+++..+ |
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~----------a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR----------IFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----------HHHhccchHHHHHHHHHHHHhCCC
Confidence 35567999999999999999999999876431110 000000000 001123344444444432 2
Q ss_pred ----CHHHHHHHHHHhCCHHHHHHHHHHhcC--hhHHHHHHHHHHHcCCHHHHHHHHHhcCC---------HHHHHHHHH
Q 000162 913 ----KADSAAKCFYDLGEYERAGKIYEERCG--KPELEKAGECFFLAGQYKHAAEVYARGNF---------FSECLAVCS 977 (1987)
Q Consensus 913 ----~~dkAAk~y~kaGdyekA~eLy~e~~~--~~ll~~aAe~fE~agqy~kAAeLYeKaGd---------~~kAIemy~ 977 (1987)
-+.--+.+|.+.|++++|.+++.+... ...|......|.+.|++++|.++|.+.-. |.-.+..|.
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 234458888888888888888876433 23488899999999999999999998522 677888899
Q ss_pred hcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHH
Q 000162 978 RGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFD 1057 (1987)
Q Consensus 978 kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~d 1057 (1987)
+.+..++|.++.+.-.+.. +..+.. ..+......|.+.|++++|.++++.....-.+. -+.
T Consensus 438 ~~g~~~~a~~~f~~m~~~~----g~~p~~--------~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~-------~~~ 498 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENH----RIKPRA--------MHYACMIELLGREGLLDEAYAMIRRAPFKPTVN-------MWA 498 (697)
T ss_pred cCCcHHHHHHHHHHHHHhc----CCCCCc--------cchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH-------HHH
Confidence 9999999999886543311 110110 112334567888999999998876532211111 245
Q ss_pred HHHHHHHHhCCHHHHHHHHHHc--------CCHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 1058 ELLVLEEEAGNFMDAANIARLT--------GDILLTADLLQKAGNFKEACNLTLN 1104 (1987)
Q Consensus 1058 Eaiell~kaG~f~EA~~iAkq~--------Gd~l~Aae~L~kAg~fdeA~rL~l~ 1104 (1987)
.++..+...|+++.|..++++. +.+..-++.|.++|++++|.+++-.
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 6777888899999888887763 4566678999999999999998543
No 78
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.94 E-value=1.2e-05 Score=116.66 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=55.3
Q ss_pred CCcEEEEecCCCCChhhHhhhcc--CCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC-CCCceecccccCC
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQ--LPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL-GHPKHLLSMQYRM 79 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~--l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~-g~p~~~L~~QYRm 79 (1987)
+.+++|||||||+....+...+. .....++|||||+.|||||- .| ..|+-++.. .++.+.|++.+|.
T Consensus 1112 ~~~v~ivDEasMv~~~~~~~l~~~~~~~~ak~vlvGD~~QL~sV~---------aG-~~f~~~~~~~~~~~~~L~~I~RQ 1181 (1960)
T TIGR02760 1112 RNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLA---------AG-KPFELAITFDIIDTAIMKEIVRQ 1181 (1960)
T ss_pred cccEEEEEccccccHHHHHHHHHhccCCCCEEEEeCChhhcCCCC---------CC-cCHHHHHhcCCCCeEEeeeEecC
Confidence 45899999999999877655543 23447999999999999983 22 345555544 4889999999999
Q ss_pred --Cccccccc
Q 000162 80 --HPSISFFP 87 (1987)
Q Consensus 80 --hP~Is~f~ 87 (1987)
.|.+....
T Consensus 1182 ~~~~~l~~a~ 1191 (1960)
T TIGR02760 1182 NNSAELKAAH 1191 (1960)
T ss_pred CCCHHHHHHH
Confidence 46654433
No 79
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.94 E-value=5.7e-06 Score=94.23 Aligned_cols=76 Identities=28% Similarity=0.295 Sum_probs=52.0
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCC--CcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLP--CIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRM 79 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~--~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRm 79 (1987)
.+.++||||||||++...+...+... ...++|++||++|||||.. .+.|.-+...+...+.|++.+|.
T Consensus 92 ~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL~pV~~----------g~~~~~l~~~~~~~~~L~~i~Rq 161 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQLPPVGA----------GSPFADLQESGGITVELTEIRRQ 161 (196)
T ss_dssp TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSHHHCST----------TCHHHHHCGCSTTEEEE---SCC
T ss_pred CcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchhcCCcC----------CcHHHHHHhcCCCeEEeChhhcC
Confidence 45799999999999988775554322 2479999999999999953 36777777766558999999999
Q ss_pred C-ccccccc
Q 000162 80 H-PSISFFP 87 (1987)
Q Consensus 80 h-P~Is~f~ 87 (1987)
. |.+.+.+
T Consensus 162 ~~~~~~~~~ 170 (196)
T PF13604_consen 162 KDPELREAA 170 (196)
T ss_dssp CCTHHHHHH
T ss_pred CChHHHHHH
Confidence 6 5554433
No 80
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.87 E-value=0.0028 Score=78.58 Aligned_cols=146 Identities=13% Similarity=0.060 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCH-------------HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHH
Q 000162 942 ELEKAGECFFLAGQYKHAAEVYARGNFF-------------SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKE 1008 (1987)
Q Consensus 942 ll~~aAe~fE~agqy~kAAeLYeKaGd~-------------~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~ 1008 (1987)
.+...|..+.+.|+|++|.++|.++-.. -....++.+.+++++|.++.++..+..... ..
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 215 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VR 215 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HH
Confidence 4566778888888888888888775211 122334566788888888776543321110 00
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc----CC---
Q 000162 1009 INKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT----GD--- 1081 (1987)
Q Consensus 1009 a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~----Gd--- 1081 (1987)
.....+..|.+.|+++.|++.+......+- ... ...+..++..+.+.|++++|...+.+. ++
T Consensus 216 -------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 216 -------ASILLGDLALAQGDYAAAIEALERVEEQDP--EYL--SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred -------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--hhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 111235677888899888887775332110 000 011234556777888888887776653 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1082 ILLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1082 ~l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
....++.+.+.|++++|..++...
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 122366667778888887765443
No 81
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.86 E-value=1e-05 Score=92.10 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=41.9
Q ss_pred ccCHHHHHhhcc-----CCcEEEEcCCCCChhHHH--HHHHHhhhhhhhhhhccccCCccc------------hhHHhhh
Q 000162 513 EVTDEQLEMILF-----PRSTFILGRSGTGKTTIL--TMKLFQNEKHHRMAKEQFDGVNNS------------LTLHTSW 573 (1987)
Q Consensus 513 ~l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI--Iikl~~~~~raa~a~~~l~~~~~A------------aTIHrLL 573 (1987)
+|+++|++||+. .+.++|+|+|||||||++ +.+.++..+ ..-..++|++.| .|||+++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l 77 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKELREKTGIEAQTIHSFL 77 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHHHHHHHTS-EEEHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHHHHHhhCcchhhHHHHH
Confidence 489999999998 358999999999999999 777775432 122233344433 3888887
Q ss_pred ccc
Q 000162 574 EVE 576 (1987)
Q Consensus 574 e~~ 576 (1987)
...
T Consensus 78 ~~~ 80 (196)
T PF13604_consen 78 YRI 80 (196)
T ss_dssp TEE
T ss_pred hcC
Confidence 764
No 82
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.83 E-value=0.0011 Score=89.45 Aligned_cols=165 Identities=12% Similarity=0.070 Sum_probs=97.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhcC--hhHHHHHHHHHHHcCCHHHHHHHHHhc---------CCHHHHHHHHHhcCChHH
Q 000162 916 SAAKCFYDLGEYERAGKIYEERCG--KPELEKAGECFFLAGQYKHAAEVYARG---------NFFSECLAVCSRGELFDI 984 (1987)
Q Consensus 916 kAAk~y~kaGdyekA~eLy~e~~~--~~ll~~aAe~fE~agqy~kAAeLYeKa---------Gd~~kAIemy~kak~wd~ 984 (1987)
.-+.+|.+.|++++|.+++.+... ...|......|.+.|++++|.++|.+. --|...+..|.+.+.+++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 346677777777777777765332 234677777788888888888887654 124566777778888887
Q ss_pred HHHHHHHhhhcc-cccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHH
Q 000162 985 GLQYINYWKQHV-DTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLE 1063 (1987)
Q Consensus 985 AlrLi~qy~~~~-e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell 1063 (1987)
|.++.....+.. ..+... .......|.+.|+++.|.+.+......+ ..-+...+..|
T Consensus 344 a~~i~~~m~~~g~~~d~~~--------------~~~Li~~y~k~G~~~~A~~vf~~m~~~d--------~~t~n~lI~~y 401 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVA--------------NTALVDLYSKWGRMEDARNVFDRMPRKN--------LISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHhCCCCCeee--------------hHHHHHHHHHCCCHHHHHHHHHhCCCCC--------eeeHHHHHHHH
Confidence 777765443321 111011 1223456777777777777665433221 22355566666
Q ss_pred HHhCCHHHHHHHHHHc---C---CHHH---HHHHHHHcCCHHHHHHHH
Q 000162 1064 EEAGNFMDAANIARLT---G---DILL---TADLLQKAGNFKEACNLT 1102 (1987)
Q Consensus 1064 ~kaG~f~EA~~iAkq~---G---d~l~---Aae~L~kAg~fdeA~rL~ 1102 (1987)
.+.|++++|.+++++- | +... -...+.++|..++|.+++
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 6777777776666652 1 2111 134455567777777664
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.82 E-value=0.0021 Score=82.68 Aligned_cols=225 Identities=20% Similarity=0.238 Sum_probs=142.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 000162 846 KSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLG 925 (1987)
Q Consensus 846 kklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaG 925 (1987)
..+|..++.+|+|+.|...|.+|=+. +++..++. .+ .-.....-.|.+|...+++++|+.+|
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~----l~k~~G~~---------hl-~va~~l~~~a~~y~~~~k~~eAv~ly---- 264 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRI----LEKTSGLK---------HL-VVASMLNILALVYRSLGKYDEAVNLY---- 264 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH----HHHccCcc---------CH-HHHHHHHHHHHHHHHhccHHHHHHHH----
Confidence 55899999999999999999987653 33333311 11 11122336888999999999999999
Q ss_pred CHHHHHHHHHHhcCh------hHHHHHHHHHHHcCCHHHHHHHHHhcCC----------------HHHHHHHHHhcCChH
Q 000162 926 EYERAGKIYEERCGK------PELEKAGECFFLAGQYKHAAEVYARGNF----------------FSECLAVCSRGELFD 983 (1987)
Q Consensus 926 dyekA~eLy~e~~~~------~ll~~aAe~fE~agqy~kAAeLYeKaGd----------------~~kAIemy~kak~wd 983 (1987)
++|..+.++..|+ ..+.+.|..|...|+|++|..+|.++=+ +...+.+|.-.+.++
T Consensus 265 --~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 265 --EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 8888888876662 3488899999999999999988777611 122333445555666
Q ss_pred HHHHHHHH----hhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhh-----cC
Q 000162 984 IGLQYINY----WKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKS-----KS 1054 (1987)
Q Consensus 984 ~AlrLi~q----y~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k-----~~ 1054 (1987)
+|..+.+. |......+ .-....+...-+..|.+-|.+.+|.++++..-+... +...+ ..
T Consensus 343 ea~~l~q~al~i~~~~~g~~----------~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~--~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGED----------NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR--ELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHHHHHHHHhhcccc----------chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--hcccCcChhhhH
Confidence 66665542 11111000 001222334557788889999999988885332221 11110 00
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHcCCHHHH---------------HHHHHHcCCHHHHHHHH
Q 000162 1055 CFDELLVLEEEAGNFMDAANIARLTGDILLT---------------ADLLQKAGNFKEACNLT 1102 (1987)
Q Consensus 1055 ~~dEaiell~kaG~f~EA~~iAkq~Gd~l~A---------------ae~L~kAg~fdeA~rL~ 1102 (1987)
-+-.....+.+.+++.+|++++.+..++..+ +..|..-|+|++|.++.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1223445556777777777777766544432 67778889999999983
No 84
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.77 E-value=2.6e-05 Score=96.54 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=55.5
Q ss_pred CCCcEEEEecCCCCCh----------hhHhhhccCCCcceEEEEecCCCC-CcccccccccccccCccHHHHHHh-CCCC
Q 000162 2 EQLKFVVIDEAAQLKE----------SESAIPLQLPCIQHAILVGDEVQL-PAMVESSVSGEAYFGRSLFERLSY-LGHP 69 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E----------~e~LipL~l~~~krlILVGD~kQL-pPiV~s~~~~~~gl~~SLFeRL~~-~g~p 69 (1987)
.++|+||||||..+.. ...+.-+ +..++.+|++-|+.|- .|- .-.+...++.+.. .+..
T Consensus 82 ~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i-~~~~kv~v~f~D~~Q~i~~~--------e~~~~~~l~~~~~~~~~~ 152 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEI-IKRAKVVVFFYDENQSIRPS--------EIGTLENLEEIAENLGIE 152 (352)
T ss_pred CcCCEEEEehhHhhhhccccccccccHHHHHHH-HhcCCEEEEEEccccEeecc--------cCCCHHHHHHHHHhcCCc
Confidence 5799999999999987 1223222 2235788888999983 221 1112233444333 3333
Q ss_pred c---eecccccCC--CccccccccccccCCc
Q 000162 70 K---HLLSMQYRM--HPSISFFPNSYFYENK 95 (1987)
Q Consensus 70 ~---~~L~~QYRm--hP~Is~f~s~~FY~g~ 95 (1987)
. +.|+.|||| .+++.+|++..++...
T Consensus 153 ~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~ 183 (352)
T PF09848_consen 153 VRHFFELKTQFRCHGSKEYIDWIDNLLDNKN 183 (352)
T ss_pred cccCcCcCcceecCCCHHHHHHHHHHHhccc
Confidence 2 389999999 8999999998877644
No 85
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.76 E-value=7.5e-05 Score=94.11 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=56.3
Q ss_pred cEEEEecChhHHHHHHhhhcCCc----------eeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHh--hhcc
Q 000162 697 EQVILVRDDCVRKEISNYVGKQA----------LVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQ--ALLD 764 (1987)
Q Consensus 697 ~~vIiVr~d~~k~~l~~~Lg~~a----------~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q--~~~~ 764 (1987)
...||++.+..+..+.+.++..+ -|.|+..-||=|=|.+|+--.-+ . ..| |+++
T Consensus 728 qIGVITpYegQr~~i~~ym~~~gsl~~~ly~~veVasVDaFQGrEKdfIIlSCVRs-n-------------~~qgIGFl~ 793 (935)
T KOG1802|consen 728 QIGVITPYEGQRSYIVNYMQTNGSLHKDLYKEVEVASVDAFQGREKDFIILSCVRS-N-------------EHQGIGFLN 793 (935)
T ss_pred HeeeecccchhHHHHHHHHHhcCccccchhheeEEEeeccccCcccceEEEEEeec-c-------------ccccccccc
Confidence 35699999988877777553222 37899999999999888721100 0 011 1111
Q ss_pred CCCCCCCCChhhhhhhcccccccCcEEecccccccchhcccccccCCcHHHHHHh
Q 000162 765 STLPASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIWENMEEFSKPMFDYWKK 819 (1987)
Q Consensus 765 ~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~~~~~s~Pm~~ywek 819 (1987)
+-+.|=||+||||..|+|+-+-...++ ..+|..
T Consensus 794 --------------------d~RRlNVaLTRaK~glvivGN~~~L~k--~~LW~~ 826 (935)
T KOG1802|consen 794 --------------------DPRRLNVALTRAKYGLVIVGNPKVLRK--HPLWGH 826 (935)
T ss_pred --------------------CchhhhhhhhhcccceEEecCHHHhhh--chHHHH
Confidence 115689999999999999998654333 244543
No 86
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.76 E-value=0.0056 Score=85.46 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=15.5
Q ss_pred cCCcEEeechhhhhhhhcc
Q 000162 1549 LKGYIFTTKSSFVDWLIYQ 1567 (1987)
Q Consensus 1549 ~~~~~~~tks~~~~~~~~~ 1567 (1987)
.+|.+-+|.-....||.-.
T Consensus 1004 ~~g~~~~~~~~~~~wl~~~ 1022 (1060)
T PLN03218 1004 SHGKLRINGLSLRRWFQPK 1022 (1060)
T ss_pred CCCeEEeccHHHHHHhccc
Confidence 3588899999999999654
No 87
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.72 E-value=0.0019 Score=90.01 Aligned_cols=239 Identities=11% Similarity=0.083 Sum_probs=149.6
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcC-------
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIG------- 912 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G------- 912 (1987)
.+..-|..+...+.+.|+++.|.++|.+........-...+...-. .....+.+++|.++|.++.
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~--------a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS--------ACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--------HHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 4566788888888888999999999987643211000000000000 0001233455555555431
Q ss_pred ----CHHHHHHHHHHhCCHHHHHHHHHHhcC------hhHHHHHHHHHHHcCCHHHHHHHHHhcC---------CHHHHH
Q 000162 913 ----KADSAAKCFYDLGEYERAGKIYEERCG------KPELEKAGECFFLAGQYKHAAEVYARGN---------FFSECL 973 (1987)
Q Consensus 913 ----~~dkAAk~y~kaGdyekA~eLy~e~~~------~~ll~~aAe~fE~agqy~kAAeLYeKaG---------d~~kAI 973 (1987)
-+.--+.+|.+.|++++|.++|.+... ...+......|.+.|++++|.++|.+.. -|...+
T Consensus 577 PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI 656 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 133457778888888888888776322 2457788889999999999999988762 256788
Q ss_pred HHHHhcCChHHHHHHHHHhhhcc-cccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhh
Q 000162 974 AVCSRGELFDIGLQYINYWKQHV-DTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKS 1052 (1987)
Q Consensus 974 emy~kak~wd~AlrLi~qy~~~~-e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k 1052 (1987)
.+|.+.+++++|.++...-.+.. ..+. . .+......|.+.|++++|.+++.......... .
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~-------~-------tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P----d 718 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGT-------V-------SYSSLMGACSNAKNWKKALELYEDIKSIKLRP----T 718 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCH-------H-------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----C
Confidence 89999999999999886544321 1110 0 12333567888999999888776432111000 1
Q ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHHc---C---CH---HHHHHHHHHcCCHHHHHHHHHH
Q 000162 1053 KSCFDELLVLEEEAGNFMDAANIARLT---G---DI---LLTADLLQKAGNFKEACNLTLN 1104 (1987)
Q Consensus 1053 ~~~~dEaiell~kaG~f~EA~~iAkq~---G---d~---l~Aae~L~kAg~fdeA~rL~l~ 1104 (1987)
.--+..++..+++.|++++|.+++.+- | +. ..-...+.+.|++++|.+++-.
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 112566788889999999998888753 2 22 2224567778999998887443
No 88
>PLN03077 Protein ECB2; Provisional
Probab=97.70 E-value=0.01 Score=82.04 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=59.1
Q ss_pred HHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc---C---CH---HHHHHHHHHc
Q 000162 1022 LHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT---G---DI---LLTADLLQKA 1092 (1987)
Q Consensus 1022 ~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~---G---d~---l~Aae~L~kA 1092 (1987)
..|.+.|+++.|.+.+... ..+ .--+...+..+.+.|+.++|.+++.+- | +. ..-...+.++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~-~~d--------~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH-EKD--------VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc-CCC--------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 4455666666665544332 111 112455677788888888888887752 2 21 1124456777
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCCC-CCchhhhhHHHHHHHHHHHhhhc
Q 000162 1093 GNFKEACNLTLNYVLSNSLWSPGSKG-WPLKQFTEKKELFEKAKSLAKSN 1141 (1987)
Q Consensus 1093 g~fdeA~rL~l~~~~~~~LW~~~~~g-~p~k~f~~k~~ll~~a~~~a~~~ 1141 (1987)
|++++|.+++-.-+-... ..+...+ -.....+-+.+.+++|.++-+.-
T Consensus 603 g~v~ea~~~f~~M~~~~g-i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYS-ITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred ChHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 888888887543221110 0010000 11345566667778888777754
No 89
>PLN03077 Protein ECB2; Provisional
Probab=97.68 E-value=0.0049 Score=85.14 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=31.0
Q ss_pred HHHHHcCCHHHHHHHHHhcCC----HHHHHHHHHhcCChHHHHHHHHHh
Q 000162 948 ECFFLAGQYKHAAEVYARGNF----FSECLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 948 e~fE~agqy~kAAeLYeKaGd----~~kAIemy~kak~wd~AlrLi~qy 992 (1987)
+.|.+.|++++|.++|.+... |...|..|.++|+.++|+++.++-
T Consensus 532 ~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667777777777777776622 456667777777777777777643
No 90
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.62 E-value=0.00023 Score=84.98 Aligned_cols=210 Identities=16% Similarity=0.120 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHH-------c
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEA-------I 911 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~-------~ 911 (1987)
...++-|+.+|..+...++++.|..+|.+.=........ ....... . ...+.+.+|.+++++ .
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~---~~~~l~~------l-~~~~~~~~A~~~~~~~~~~~~~~ 110 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ---DYERLIQ------L-LQDGDPEEALKLAEKAYERDGDP 110 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc---ccccccc------c-ccccccccccccccccccccccc
Confidence 457788999999999999999999999975332111000 0000000 0 123344444444433 2
Q ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHhc-------ChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHHHHHH
Q 000162 912 GKADSAAKCFYDLGEYERAGKIYEERC-------GKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SECLAVC 976 (1987)
Q Consensus 912 G~~dkAAk~y~kaGdyekA~eLy~e~~-------~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kAIemy 976 (1987)
.....++.+|...++|+++.+++.+.. +...+...|.++.+.|++++|.++|.++ ++. ...+-++
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL 190 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 234567888999999999888876621 1245778899999999999999999888 222 2233466
Q ss_pred HhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHH-HHHHHHhhcCC
Q 000162 977 SRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMD-LMRNFLKSKSC 1055 (1987)
Q Consensus 977 ~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d-~aa~fL~k~~~ 1055 (1987)
++.++.+++.+++..|.+....+.. +...-+..|..+|+++.|...+...-... .-.. -
T Consensus 191 i~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~------~ 250 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAAPDDPD--------------LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL------W 250 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH-HTSCC--------------HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH------H
T ss_pred HHCCChHHHHHHHHHHHHHCcCHHH--------------HHHHHHHHhccccccccccccccccccccccccc------c
Confidence 7778888888888777665322211 22233567777888888877666321100 0001 1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Q 000162 1056 FDELLVLEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1056 ~dEaiell~kaG~f~EA~~iAkq 1078 (1987)
....++++...|++++|..+.++
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccc
Confidence 22344566666666666655544
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.62 E-value=0.011 Score=84.32 Aligned_cols=242 Identities=13% Similarity=0.008 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchhH----HHHHhh--hHHhhhhhhcC-ChH-----------HHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWEG----RSKATG--LKAASDHIRSS-NPL-----------EANV 899 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la~----la~A~~--l~~aA~~l~s~-~~~-----------ea~~ 899 (1987)
..+..+..+|..+...|+++.|.++|.++-. +.... +...+. -.++|...... ... ....
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 4566788999999999999999999998754 21111 111000 00011110000 000 0001
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCHHH--H
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFFSE--C 972 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~~k--A 972 (1987)
.+..-++.|...|++++|+++| ++|+++.. .....+...|..+...|++++|...|.++ ++.+. +
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~------~~Al~~~P--~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a 534 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQ------RQRLALDP--GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYA 534 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHH------HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 1222334444444444444444 33333211 11345778999999999999999999886 22111 1
Q ss_pred -HHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHH
Q 000162 973 -LAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEIN-KVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFL 1050 (1987)
Q Consensus 973 -Iemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~-~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL 1050 (1987)
...+.+.+.+++|+..+++.......+ .+ ..+. .+.....-..+..+...|++++|+.+++....-.
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~-~~----~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~------ 603 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNS-NI----QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST------ 603 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcCh-hH----HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc------
Confidence 124456788999998886544321111 00 1111 1111112233566788889998888877422111
Q ss_pred hhcCCHHHHHHHHHHhCCHHHHHHHHHHc----CCH----HHHHHHHHHcCCHHHHHHHHH
Q 000162 1051 KSKSCFDELLVLEEEAGNFMDAANIARLT----GDI----LLTADLLQKAGNFKEACNLTL 1103 (1987)
Q Consensus 1051 ~k~~~~dEaiell~kaG~f~EA~~iAkq~----Gd~----l~Aae~L~kAg~fdeA~rL~l 1103 (1987)
........++.+.|++++|...+++. ++. ...+..|...|++++|...+-
T Consensus 604 ---~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 604 ---RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred ---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 11122344555556666665555542 111 112555556666666665543
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0021 Score=84.07 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH-HhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC---HHHHH
Q 000162 898 NVILREAANIFEAIGKADSAAKCFY-DLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF---FSECL 973 (1987)
Q Consensus 898 ~~~y~eAAelYe~~G~~dkAAk~y~-kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd---~~kAI 973 (1987)
.+.|+||-.+|-+......|++..+ ..+..++|.+.++.......+-+.|+.--+.|.-.+|++-|.|+.| |.+.+
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi 1140 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVI 1140 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHH
Confidence 3569999999999999999998887 7789999999988733357899999999999999999999999965 57888
Q ss_pred HHHHhcCChHHHHHHHHHhhhccc----------------------------------------ccchhhhhhHHHHHHH
Q 000162 974 AVCSRGELFDIGLQYINYWKQHVD----------------------------------------TDVGLVRRSKEINKVE 1013 (1987)
Q Consensus 974 emy~kak~wd~AlrLi~qy~~~~e----------------------------------------~e~~~~~ra~~a~~~a 1013 (1987)
+.+.+.+.|++.++++..-.+... -+++.|+.|+.++...
T Consensus 1141 ~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1141 DVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 899999999999998874322111 1344444444444443
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcc---HHH-------HHHH--Hh--------hcCCHHHHHHHHHHhCCHHHHH
Q 000162 1014 QDFLQSCALHYYQLNDKKSMMKFVKAFHS---MDL-------MRNF--LK--------SKSCFDELLVLEEEAGNFMDAA 1073 (1987)
Q Consensus 1014 ~~~le~cA~~ylklgD~~~Am~~vk~~~s---~d~-------aa~f--L~--------k~~~~dEaiell~kaG~f~EA~ 1073 (1987)
..| .+-|..+..+|++++|+...++.++ |.+ +.+| .+ ..+.+++++++|...|.|+|-.
T Consensus 1221 SN~-a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1221 SNF-AKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 333 2345567888999999988886444 333 1112 11 3466888999999999999988
Q ss_pred HHHHHc
Q 000162 1074 NIARLT 1079 (1987)
Q Consensus 1074 ~iAkq~ 1079 (1987)
.+++..
T Consensus 1300 sl~Ea~ 1305 (1666)
T KOG0985|consen 1300 SLLEAG 1305 (1666)
T ss_pred HHHHhh
Confidence 877664
No 93
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.57 E-value=0.006 Score=81.19 Aligned_cols=183 Identities=10% Similarity=0.060 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcC-----C---HHHH
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGN-----F---FSEC 972 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaG-----d---~~kA 972 (1987)
+...+.+|...|++++|+++| ++|+++... ....+...|..+...|++++|..+|.++- + +...
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~------~kal~l~P~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l 473 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDY------QKSIDLDPD--FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYY 473 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHH------HHHHHcCcc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 334444555555555555555 333333111 12346678999999999999999998861 1 1233
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhh
Q 000162 973 LAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKS 1052 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k 1052 (1987)
..++...++|++|++..++-.+........ .......+..+...|...|+++.|.+.+...-..+- +.
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~-------~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p--~~--- 541 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPM-------YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP--EC--- 541 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccc-------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--Cc---
Confidence 457778888998888776543322111000 001111233444455566888888887764211110 00
Q ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHH
Q 000162 1053 KSCFDELLVLEEEAGNFMDAANIARLTGDILLTADLLQKAGNFKEACNLTL 1103 (1987)
Q Consensus 1053 ~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~kAg~fdeA~rL~l 1103 (1987)
...+....+++...|++++|.+.+.+.-.......-...+..|.+|.++.+
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~ 592 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQI 592 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 001234556677777777777776665433333333555566666766633
No 94
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.57 E-value=0.012 Score=84.02 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
.+++.|..+|..++..|++++|..+|.++-.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999998643
No 95
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.56 E-value=0.013 Score=72.60 Aligned_cols=214 Identities=10% Similarity=0.033 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccc-hhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCC------
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTY-WEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGK------ 913 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~-la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~------ 913 (1987)
++.-|..+|..+...|+++.|...|.++-... .........+...+.. ....+.+.+|...|.+.-.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~------~~~~g~~~~A~~~~~~~l~~~~~~~ 141 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD------YLKAGLLDRAEELFLQLVDEGDFAE 141 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHcCCcchH
Confidence 45678888999999999999999988754311 0000000000000100 1122334445444444321
Q ss_pred --HHHHHHHHHHhCCHHHHHHHHHHhcC----------hhHHHHHHHHHHHcCCHHHHHHHHHhcCCH--------HHHH
Q 000162 914 --ADSAAKCFYDLGEYERAGKIYEERCG----------KPELEKAGECFFLAGQYKHAAEVYARGNFF--------SECL 973 (1987)
Q Consensus 914 --~dkAAk~y~kaGdyekA~eLy~e~~~----------~~ll~~aAe~fE~agqy~kAAeLYeKaGd~--------~kAI 973 (1987)
+..-+.+|.+.|+|++|.+++..... ...+...|..+.+.|++++|.++|.++-.. -...
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 221 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLG 221 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHH
Confidence 11125566677777777777665311 013456788888999999999999986221 2344
Q ss_pred HHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhc
Q 000162 974 AVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSK 1053 (1987)
Q Consensus 974 emy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~ 1053 (1987)
.+|.+.+++++|.++.++..+.... . ....+...+..|...|+++.|+..+....... ...
T Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~~p~---~----------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------p~~ 282 (389)
T PRK11788 222 DLALAQGDYAAAIEALERVEEQDPE---Y----------LSEVLPKLMECYQALGDEAEGLEFLRRALEEY------PGA 282 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHChh---h----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCc
Confidence 5788899999999988654432110 0 00112334567888999999998777532211 001
Q ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHc
Q 000162 1054 SCFDELLVLEEEAGNFMDAANIARLT 1079 (1987)
Q Consensus 1054 ~~~dEaiell~kaG~f~EA~~iAkq~ 1079 (1987)
..+...++++.+.|++++|...+.+.
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11233456777888888887766653
No 96
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.54 E-value=1.4e-05 Score=81.02 Aligned_cols=50 Identities=30% Similarity=0.315 Sum_probs=39.1
Q ss_pred cEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEecccccccEEEE
Q 000162 194 AVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRARHCLWIL 247 (1987)
Q Consensus 194 ~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVALTRAK~~LiIV 247 (1987)
.+.+.|+|++||.|+|.||+......+ .-....++++||+||||+.|+||
T Consensus 55 ~~~~~Tih~akGle~d~V~v~~~~~~~----~~~~~~~~lYva~TRA~~~L~iv 104 (104)
T PF13538_consen 55 HAYAMTIHKAKGLEFDAVIVVDPDSSN----FDELSRRLLYVAITRAKHELYIV 104 (104)
T ss_dssp CCSEEETGGCTT--EEEEEEEEGGGGS----GCGCHHHHHHHHHTTEEEEEEEE
T ss_pred cEEEEEhHHhcCccccEEEEEcCCccc----CCchhhccEEeeHhHhhhhhCCC
Confidence 578999999999999999998876551 11334677999999999999987
No 97
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=97.54 E-value=3.1e-05 Score=87.46 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=48.5
Q ss_pred cEEEEecChhHHHHHHhhhcC---C-----ceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCC
Q 000162 697 EQVILVRDDCVRKEISNYVGK---Q-----ALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLP 768 (1987)
Q Consensus 697 ~~vIiVr~d~~k~~l~~~Lg~---~-----a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~ 768 (1987)
+.+||++....+..+.+.+.+ . ..|.|||..||.|+|+||+- +..+. +
T Consensus 114 ~I~Iitpy~~Q~~~i~~~l~~~~~~~~~~~~~v~Tvd~~QG~E~diVi~s-~v~~~-----------------------~ 169 (200)
T PF13087_consen 114 SIGIITPYRAQVALIRKALRSRYPSSPIKDIKVSTVDSFQGQEADIVIVS-LVRTN-----------------------S 169 (200)
T ss_dssp GEEEEES-HHHHHHHHHHHHHCSTCHHHHCSEEEEHHHHTT--EEEEEEE-E---S-----------------------T
T ss_pred CceEEcCchHHHHHHHHHHhhhccccccceEEEecHHHhccccceEEEEE-eccCC-----------------------c
Confidence 577999999888766665531 1 57999999999999999882 11000 0
Q ss_pred CCCCChhhhhhhcccccccCcEEecccccccchhccc
Q 000162 769 ASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIWEN 805 (1987)
Q Consensus 769 s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~ 805 (1987)
. .... .-.+.+.+-||+||||+.|||+-+
T Consensus 170 ~-------~~~~-f~~~~~r~nVA~SRAk~~liiig~ 198 (200)
T PF13087_consen 170 S-------SNIG-FLNDPNRLNVALSRAKSGLIIIGN 198 (200)
T ss_dssp T-------S-SG-GGC-HHHHHHHHTSEEEEEEEEE-
T ss_pred c-------cccc-ccCCcCeeeeeHHHHhcCEEEEec
Confidence 0 0000 112346799999999999999864
No 98
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00087 Score=77.03 Aligned_cols=154 Identities=15% Similarity=0.098 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHh
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSR 978 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~k 978 (1987)
..|+-|+. .|.+|+-+|..+++|++|..- +.++++++|....+-+||+.|+++++. ..+
T Consensus 25 ad~dgaas------~yekAAvafRnAk~feKakdc---------LlkA~~~yEnnrslfhAAKayEqaamL------ake 83 (308)
T KOG1585|consen 25 ADWDGAAS------LYEKAAVAFRNAKKFEKAKDC---------LLKASKGYENNRSLFHAAKAYEQAAML------AKE 83 (308)
T ss_pred CCchhhHH------HHHHHHHHHHhhccHHHHHHH---------HHHHHHHHHhcccHHHHHHHHHHHHHH------HHH
Confidence 34555555 445788888888888888764 346888999999999999999888763 333
Q ss_pred cCChHHHHHHHHH----hhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----hccHHHHHHHH
Q 000162 979 GELFDIGLQYINY----WKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA----FHSMDLMRNFL 1050 (1987)
Q Consensus 979 ak~wd~AlrLi~q----y~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~----~~s~d~aa~fL 1050 (1987)
...|.++..++++ |.+....++.. +-+++|+.. ++..+++.|+.+++. +..-+....
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAA------------maleKAak~-lenv~Pd~AlqlYqralavve~~dr~~m-- 148 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAA------------MALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQM-- 148 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHH------------HHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHH--
Confidence 3444445555442 44444333221 123344443 334556666666552 111111000
Q ss_pred hhcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHH
Q 000162 1051 KSKSCFDELLVLEEEAGNFMDAANIARLTGDILLTADLL 1089 (1987)
Q Consensus 1051 ~k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L 1089 (1987)
..+++..+..++++-.+|+||...+...+.+....+-|
T Consensus 149 -a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 149 -AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred -HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 01123344455666666677766666665544443333
No 99
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.52 E-value=0.0032 Score=79.37 Aligned_cols=225 Identities=16% Similarity=0.172 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cch-------hHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHH-----
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKD--TYW-------EGRSKATGLKAASDHIRSSNPLEANVILREAAN----- 906 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~l-------a~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAe----- 906 (1987)
-.+.|-.+|..+..+|+.+.|..||..|=. +.+ ..+.++.|. ..++..+|.+|.+
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr-----------l~ea~~cYlkAi~~qp~f 217 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR-----------LEEAKACYLKAIETQPCF 217 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc-----------cchhHHHHHHHHhhCCce
Confidence 346788889999999999999999987643 211 111111111 1233334444433
Q ss_pred ---------HHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc----CCHHHH-
Q 000162 907 ---------IFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----NFFSEC- 972 (1987)
Q Consensus 907 ---------lYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----Gd~~kA- 972 (1987)
.|...|+...|++.| ++|+.+=-. =...|...|.-|.+++.|+.|..+|.++ .++..|
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y------~eAvkldP~--f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~ 289 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHY------EEAVKLDPN--FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH 289 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHH------HHhhcCCCc--chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc
Confidence 344445555555555 444443000 0245778899999999999999999987 111111
Q ss_pred ---HHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--hccHHHHH
Q 000162 973 ---LAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA--FHSMDLMR 1047 (1987)
Q Consensus 973 ---Iemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~--~~s~d~aa 1047 (1987)
.-+|.+.|+.|.|+.- |++..+.+.+. ..++ ..-|..+...|++.+|++++.. .-.|..
T Consensus 290 gNla~iYyeqG~ldlAI~~---Ykral~~~P~F----~~Ay-------~NlanALkd~G~V~ea~~cYnkaL~l~p~h-- 353 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDT---YKRALELQPNF----PDAY-------NNLANALKDKGSVTEAVDCYNKALRLCPNH-- 353 (966)
T ss_pred cceEEEEeccccHHHHHHH---HHHHHhcCCCc----hHHH-------hHHHHHHHhccchHHHHHHHHHHHHhCCcc--
Confidence 1123344444433322 12211111111 0111 1224556667888888877663 112221
Q ss_pred HHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc----CCHHHH----HHHHHHcCCHHHHHHHHHHH
Q 000162 1048 NFLKSKSCFDELLVLEEEAGNFMDAANIARLT----GDILLT----ADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1048 ~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~----Gd~l~A----ae~L~kAg~fdeA~rL~l~~ 1105 (1987)
.+-+--+..++.++|++++|.++++.. .++..| |-.|.+.|++++|...+..-
T Consensus 354 -----adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 354 -----ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred -----HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 112333556777888888888887765 333333 55567789999998876655
No 100
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.51 E-value=6.5e-05 Score=85.83 Aligned_cols=30 Identities=43% Similarity=0.541 Sum_probs=23.1
Q ss_pred ccCHHHHHhhcc---CC-cEEEEcCCCCChhHHH
Q 000162 513 EVTDEQLEMILF---PR-STFILGRSGTGKTTIL 542 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~-~~iItGgPGTGKTTVI 542 (1987)
.|++.|++||.. ++ .++|.|+|||||||++
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTL 34 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH
Confidence 478999999998 44 4999999999999988
No 101
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.50 E-value=7e-05 Score=89.78 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=29.0
Q ss_pred cCHHHHHhhcc-CCcEEEEcCCCCChhHHHHHHHH
Q 000162 514 VTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 514 l~~eQk~AI~~-~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
|+++|+++|.. +++++|.||||||||||++.++.
T Consensus 1 l~~eQ~~~i~~~~~~~lV~a~AGSGKT~~l~~ri~ 35 (315)
T PF00580_consen 1 LTDEQRRIIRSTEGPLLVNAGAGSGKTTTLLERIA 35 (315)
T ss_dssp S-HHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCEEEEeCCCCCchHHHHHHHH
Confidence 68999999999 99999999999999999966554
No 102
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.50 E-value=0.0052 Score=77.62 Aligned_cols=267 Identities=16% Similarity=0.125 Sum_probs=144.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHhcccc--hh-HHH------HHhh-------hHHhhhhhhcCChHHHHHHHHHHHHHHHHc
Q 000162 848 RGIKLFYENNYEMATICFEKAKDTY--WE-GRS------KATG-------LKAASDHIRSSNPLEANVILREAANIFEAI 911 (1987)
Q Consensus 848 lA~~l~~~g~ye~A~k~F~rAgd~~--la-~la------~A~~-------l~~aA~~l~s~~~~ea~~~y~eAAelYe~~ 911 (1987)
.|.-+-.+|..++|..||.+|=.++ ++ .|. .+.| ..++|..+ +| .....|.-.+..|.++
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP-~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DP-NFLDAYINLGNVYKEA 265 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CC-cchHHHhhHHHHHHHH
Confidence 3555666789999999999875421 11 111 1111 11111111 11 1223455667777788
Q ss_pred CCHHHHHHHHHHhC---------------------CHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 912 GKADSAAKCFYDLG---------------------EYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 912 G~~dkAAk~y~kaG---------------------dyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
+.|++|+.||.++- +.+-|++-|+.... ...+...|..+.+.|.-.+|+.+|-+
T Consensus 266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 88888888886653 23445555554211 34477788888888888888888877
Q ss_pred cC----CH----HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000162 966 GN----FF----SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFV 1037 (1987)
Q Consensus 966 aG----d~----~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~v 1037 (1987)
+= .+ .....+|.+.+.+++|.++-..--+. -++. .. --..-+..|.+.|++.+|+..+
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~----aa-------a~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEF----AA-------AHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---Chhh----hh-------hhhhHHHHHHhcccHHHHHHHH
Confidence 61 11 12223555556666665554211110 0000 00 0112244577788888888777
Q ss_pred HHhccHH--------HHHHHHhhcCCHHHHHHHHHHhCC----HHHH----HHHHHHcCCHHHHHHHHHHc----CCHHH
Q 000162 1038 KAFHSMD--------LMRNFLKSKSCFDELLVLEEEAGN----FMDA----ANIARLTGDILLTADLLQKA----GNFKE 1097 (1987)
Q Consensus 1038 k~~~s~d--------~aa~fL~k~~~~dEaiell~kaG~----f~EA----~~iAkq~Gd~l~Aae~L~kA----g~fde 1097 (1987)
+..-..+ -...-+++.|+.++|++.+.++=. |.|| +.+++..|.+.+|...|..+ -+|.+
T Consensus 412 kealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 412 KEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 7432222 112236778888888888877542 4444 34566678888887777664 55666
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCchhhhhHHHHHHHHHHH
Q 000162 1098 ACNLTLNYVLSNSLWSPGSKGWPLKQFTEKKELFEKAKSL 1137 (1987)
Q Consensus 1098 A~rL~l~~~~~~~LW~~~~~g~p~k~f~~k~~ll~~a~~~ 1137 (1987)
|..-.+.-.+-=+-|..-+ |.|.+-++....-.++
T Consensus 492 A~cNllh~lq~vcdw~D~d-----~~~~kl~sivrdql~~ 526 (966)
T KOG4626|consen 492 AYCNLLHCLQIVCDWTDYD-----KRMKKLVSIVRDQLEK 526 (966)
T ss_pred hhhHHHHHHHHHhcccchH-----HHHHHHHHHHHHHHhh
Confidence 6655444444445564322 4444444444444333
No 103
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.42 E-value=0.0064 Score=80.19 Aligned_cols=237 Identities=15% Similarity=0.173 Sum_probs=138.2
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
.++++.|..+|+...++|++++|.-||.||=.. +|.. ...+.+-+.+|.+.|+..+|+
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~---------------------~p~n-~~~~~ers~L~~~~G~~~~Am 261 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQA---------------------NPSN-WELIYERSSLYQKTGDLKRAM 261 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc---------------------CCcc-hHHHHHHHHHHHHhChHHHHH
Confidence 456699999999999999999999999875321 1111 234567788999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc----------CCHHHHHHHHHhcCChHHHHHH
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----------NFFSECLAVCSRGELFDIGLQY 988 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----------Gd~~kAIemy~kak~wd~AlrL 988 (1987)
++|.++=++.-=+++-+- .+.....|++|-..+.-+.|++..+.+ .+++=.++++.+.++|+.|.+.
T Consensus 262 ~~f~~l~~~~p~~d~er~---~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 262 ETFLQLLQLDPPVDIERI---EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHhhCCchhHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 999655432211111000 345667889999888888888876554 4567788999999999999998
Q ss_pred HHHhhhc----ccccchhhhhhHH----HHHHHHH--H-HH--HHHHHHHhcCC--HHHH-HHHHHHhccHHHHHHHHhh
Q 000162 989 INYWKQH----VDTDVGLVRRSKE----INKVEQD--F-LQ--SCALHYYQLND--KKSM-MKFVKAFHSMDLMRNFLKS 1052 (1987)
Q Consensus 989 i~qy~~~----~e~e~~~~~ra~~----a~~~a~~--~-le--~cA~~ylklgD--~~~A-m~~vk~~~s~d~aa~fL~k 1052 (1987)
+..-..- +..+..-.++-+. ......+ | +. ....+..++++ ..++ ..++...+-|- -..
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~-----~d~ 413 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWV-----SDD 413 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCCh-----hhh
Confidence 8643220 0000000000000 0000000 0 00 11222333322 2222 22222222111 112
Q ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHHc---------CCHHHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1053 KSCFDELLVLEEEAGNFMDAANIARLT---------GDILLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1053 ~~~~dEaiell~kaG~f~EA~~iAkq~---------Gd~l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
-|.+-++++++...|++.+|.+++... +.|..-|.+|..-|.+++|...+-+-
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345667778888888888887777653 35556677777777777777664433
No 104
>PF13245 AAA_19: Part of AAA domain
Probab=97.38 E-value=0.00014 Score=70.77 Aligned_cols=19 Identities=42% Similarity=0.440 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI 542 (1987)
.++.++|+|+|||||||++
T Consensus 9 ~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred hCCeEEEECCCCCCHHHHH
Confidence 3667888999999999777
No 105
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=97.35 E-value=4.4e-05 Score=100.52 Aligned_cols=260 Identities=22% Similarity=0.244 Sum_probs=167.2
Q ss_pred CCcEEEEecCCCCChhhHhhhccCC-CcceEEEEecCCCCCcccccccccccccCccHHHHHH----hCCCCceeccccc
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLP-CIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLS----YLGHPKHLLSMQY 77 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~-~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~----~~g~p~~~L~~QY 77 (1987)
.+-+.+.|||.++.++.++.|+.++ ..++++|.||+.||-|...+....+..+. .+..++. -.+-|.+-.+.+|
T Consensus 265 ~~t~~~~~eaae~~~~~~l~P~~~~~~~~~~~L~~~~~ql~~~l~s~~~~~~~~~-~~~~~~~~~y~~~~p~~~g~~~n~ 343 (775)
T KOG1804|consen 265 FFTHILLDEAAQAMECELLMPLALPSSGTRIVLAGPHLQLTPFLNSVAREEQALH-LLLCRLPEPYIVFGPPGTGKTENY 343 (775)
T ss_pred ceeeeeHHHHHhcCCceeecccccCCCCceeeecccccccccchhhhhhhhhhhh-hcccccccccccccCCCcCCccch
Confidence 4668889999999999999997654 35899999999999999877655544433 2222222 2345567789999
Q ss_pred CCCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccc--cccccCCHHHHHHHHHHHHHHHH
Q 000162 78 RMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEF--IEHSCRNMVEVSVVMKILRNLYK 155 (1987)
Q Consensus 78 RmhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~--~~~S~~N~~Ea~~V~~lV~~L~~ 155 (1987)
|++-.+..|.+..||... +++....-... .....-|..|... .+.... ......|..|+..++.-+..+.+
T Consensus 344 ~~a~~~v~~~~~~~~il~--~~p~~a~~k~~----~~rl~~p~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~e~~~~ 416 (775)
T KOG1804|consen 344 REAIAIVSFTSPHFYILV--CAPSNASGKQP----AHRLHYPLTFSTA-RGEDVRAKSSTAWYNNAEVSEVVEKVEELRK 416 (775)
T ss_pred HHHHHHHHhcchHHHhhc--ccccccccccc----ccccccccccccc-ccccccccchhHHhhhHHHHHHHHHHHHHhh
Confidence 999999999999999642 33322211111 1111234455544 222221 33456688888888888888875
Q ss_pred Hhhcc---cCCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccC---EEEEEecccCCC------Cc
Q 000162 156 AWVES---KEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEED---IIIISTVRSNNT------GS 223 (1987)
Q Consensus 156 ~~~~~---~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~D---VVIlS~Vrsn~~------~~ 223 (1987)
.+.-. ..-.++|++++|..|+..++..|.+.- ++.+.-.--.+|..+- .||+++....-. ..
T Consensus 417 ~~~~~i~i~t~~sag~~~~~g~~v~~f~hil~DeA------g~stEpe~lv~i~~~~~~~~vvLsgdh~Qlgpv~~s~~A 490 (775)
T KOG1804|consen 417 VWPYRWGITTCTSAGCVTSYGFQVGHFRHILVDEA------GVSTEPELLVPGKQFRQPFQVVLSGDHTQLGPVSKSARA 490 (775)
T ss_pred ccceEEEEeeccceeeeecccccccceeeeeeccc------ccccCcccccccccccceeEEEEccCcccccccccchhh
Confidence 54321 123479999999999999988874321 1222233334444443 566665433211 11
Q ss_pred ccCCCCCCceEEecccccccEEEEcchhhhccC---chHHHHHHHHHHhcCceecc
Q 000162 224 IGFASTPQRINVALTRARHCLWILGSERTLNHS---ESVWESLLDDAKARQCFFNI 276 (1987)
Q Consensus 224 iGFL~d~nRLNVALTRAK~~LiIVGn~~~L~~s---~~~W~~Ll~~ak~r~c~~~a 276 (1987)
-.+-.+...+|.|+|||-...-.+|+.+.+... ...|.+....+-.+.-++..
T Consensus 491 ~~~gl~rsLler~l~r~~~~~~~~g~~~~l~~t~l~rnyrshp~il~l~~~l~y~~ 546 (775)
T KOG1804|consen 491 EELGLDRSLLERALTRAQSLVAVVGDYNALCSTGLCRNYRSHPIILCLENRLYYLG 546 (775)
T ss_pred hhhcccHHHHHHHHHHHhhccccCCCcccccchhhHHHHhhhhHhhhccccccccc
Confidence 113335778999999999999999999877654 45777777776666655543
No 106
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.31 E-value=5.5e-05 Score=92.86 Aligned_cols=236 Identities=8% Similarity=-0.031 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
..|+.-+..+...-+-..|.+.|++.||..+..-.. ..+..+...+.......-...|++|++++.+.....+|+.|-.
T Consensus 4 ~~~~~~~~~a~~d~~~~~airiyr~ledaalv~pi~-~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~w 82 (615)
T KOG2247|consen 4 KVIPCTLTKAQEDFKCVSAIRIYRRLEDAALVGPII-HRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAW 82 (615)
T ss_pred cchhhHHHhhhhhccchHHHHHHHHhhhhhccccce-eeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhh
Confidence 457778888888888999999999999965532110 0111111112222222334578999999999888888888888
Q ss_pred HhCCHHHHHHHHHHhc----------------------------------------------------------------
Q 000162 923 DLGEYERAGKIYEERC---------------------------------------------------------------- 938 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~---------------------------------------------------------------- 938 (1987)
+. +|+.|+-++++.+
T Consensus 83 Dk-egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR 161 (615)
T KOG2247|consen 83 DK-EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR 161 (615)
T ss_pred cc-ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccc
Confidence 77 8888775544200
Q ss_pred ---------ChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHH---------Hhhhcccccc
Q 000162 939 ---------GKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYIN---------YWKQHVDTDV 1000 (1987)
Q Consensus 939 ---------~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~---------qy~~~~e~e~ 1000 (1987)
+.....+|++.++..+++.+||.+|+.+|.++.|--.|.+.+.|.+|-+++. +|.+..+.|.
T Consensus 162 gtq~av~lEd~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~ 241 (615)
T KOG2247|consen 162 GTQIAVTLEDYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE 241 (615)
T ss_pred eeEEEecccceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC
Confidence 0122556999999999999999999999999999999999999998877553 2332222221
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHH-HhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 000162 1001 GLVRRSKEINKVEQDFLQSCALHYY-QLNDKKSMMKFVK-AFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1001 ~~~~ra~~a~~~a~~~le~cA~~yl-klgD~~~Am~~vk-~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq 1078 (1987)
. .+. -++...++....+.+.- ...+..+|..++. +.++.+..++|+++. ++..++++++.++++.+||.++..
T Consensus 242 p---val-~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkl-dy~~aLqsiavsqcvnkaftlgdn 316 (615)
T KOG2247|consen 242 P---VAL-QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKL-DYRGALQSIAVSQCVNKAFTLGDN 316 (615)
T ss_pred c---cce-EeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHh-hHHhhhHHHHHHHHHHHHHHHHhh
Confidence 0 000 00111111111011111 1223334444333 344445566666666 666777777777777777766666
Q ss_pred cCCHHHH
Q 000162 1079 TGDILLT 1085 (1987)
Q Consensus 1079 ~Gd~l~A 1085 (1987)
+.....-
T Consensus 317 ~nkvRdl 323 (615)
T KOG2247|consen 317 MNKVRDL 323 (615)
T ss_pred hHHHHHH
Confidence 6543333
No 107
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.31 E-value=0.033 Score=74.93 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=88.9
Q ss_pred HHHhCCHHHHHHHHHHhcC------hhHHHHHHHHHHHcCCHHHHHHHHHhcC-----CH---HHHHHHHHhcCChHH--
Q 000162 921 FYDLGEYERAGKIYEERCG------KPELEKAGECFFLAGQYKHAAEVYARGN-----FF---SECLAVCSRGELFDI-- 984 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~------~~ll~~aAe~fE~agqy~kAAeLYeKaG-----d~---~kAIemy~kak~wd~-- 984 (1987)
+...|++++|...|..... .......+..+...|++++|.+.|.++- +. .....+|.+.+.+++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 3445666666655544211 1122344667777788888888777751 11 122345556666664
Q ss_pred --HHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHH
Q 000162 985 --GLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVL 1062 (1987)
Q Consensus 985 --AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiel 1062 (1987)
|....++-.+....+ . .....-+..+...|+++.|+..++..-..+- . ...-..-....
T Consensus 267 ~~A~~~~~~Al~l~P~~-------~-------~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P--~---~~~a~~~La~~ 327 (656)
T PRK15174 267 LQAAEHWRHALQFNSDN-------V-------RIVTLYADALIRTGQNEKAIPLLQQSLATHP--D---LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHHHhhCCCC-------H-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C---CHHHHHHHHHH
Confidence 444443322211111 0 0111225677888999988877664221110 0 00001123466
Q ss_pred HHHhCCHHHHHHHHHHc----CCH----HHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1063 EEEAGNFMDAANIARLT----GDI----LLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1063 l~kaG~f~EA~~iAkq~----Gd~----l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
+...|++++|...+.+. ++. ...+..+...|++++|...+-..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77788888888777653 322 22366677889999999986554
No 108
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.29 E-value=0.011 Score=75.50 Aligned_cols=153 Identities=11% Similarity=0.041 Sum_probs=110.7
Q ss_pred HhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchh-HHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCC
Q 000162 835 AMQVASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWE-GRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGK 913 (1987)
Q Consensus 835 ~la~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la-~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~ 913 (1987)
.+-+...++.-...+..+.++|..+.|+.+ +.|++.. .++...+-.+.|..+..... ....|.+.++...+.|+
T Consensus 288 ~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~---~~D~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 288 NLLPNIPKDQGQSIARFLEKKGYPELALQF---VTDPDHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HTGGG--HHHHHHHHHHHHHTT-HHHHHHH---SS-HHHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred hhcccCChhHHHHHHHHHHHCCCHHHHHhh---cCChHHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 333333444556677888888999998876 4454332 34444443334433322111 23479999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHh
Q 000162 914 ADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 914 ~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy 992 (1987)
++.|.+||.++++|.+..-||.-.++.+.+.+.|+..+..|++.-|-..+...||+++|++++.+.+++.+|.-.++.|
T Consensus 363 ~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty 441 (443)
T PF04053_consen 363 IELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTY 441 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 9999999999999999999998866678899999999999999999999999999999999999999999888777555
No 109
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0037 Score=71.74 Aligned_cols=73 Identities=22% Similarity=0.360 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHH-------HHHHhc------
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAA-------EVYARG------ 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAA-------eLYeKa------ 966 (1987)
.|++|+++|++ |+.+|.-+++|..|+..|.+ +|+++.++|.-.+|+ .+|.++
T Consensus 29 k~eeAadl~~~------Aan~yklaK~w~~AG~aflk---------aA~~h~k~~skhDaat~YveA~~cykk~~~~eAv 93 (288)
T KOG1586|consen 29 KYEEAAELYER------AANMYKLAKNWSAAGDAFLK---------AADLHLKAGSKHDAATTYVEAANCYKKVDPEEAV 93 (288)
T ss_pred chHHHHHHHHH------HHHHHHHHHhHHHHHHHHHH---------HHHHHHhcCCchhHHHHHHHHHHHhhccChHHHH
Confidence 46666665543 44555555555555555432 444444444322222 222222
Q ss_pred CCHHHHHHHHHhcCChHHHHH
Q 000162 967 NFFSECLAVCSRGELFDIGLQ 987 (1987)
Q Consensus 967 Gd~~kAIemy~kak~wd~Alr 987 (1987)
+..++||++|...|+|..|.+
T Consensus 94 ~cL~~aieIyt~~Grf~~aAk 114 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMGRFTMAAK 114 (288)
T ss_pred HHHHHHHHHHHhhhHHHHHHh
Confidence 234566777777777766554
No 110
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.23 E-value=0.033 Score=72.01 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC------hhHHHHHHHHHHHcCCHHHHHHHHHhc-------
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG------KPELEKAGECFFLAGQYKHAAEVYARG------- 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~------~~ll~~aAe~fE~agqy~kAAeLYeKa------- 966 (1987)
-+...+.+|...|++++|...+ ++|+++..+..+ ...+..+|..|...++|.+|+.+|.++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~------k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLC------KQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHH------HHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3555999999999999999998 777777655333 233556999999999999999999998
Q ss_pred -CCHH--------HHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000162 967 -NFFS--------ECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFV 1037 (1987)
Q Consensus 967 -Gd~~--------kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~v 1037 (1987)
|.-. ....+|.+.+.|++|..+++.-.+-.+...+ ....+. ...+...+..+...++++.|...+
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~-----~~~~~v-~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG-----ASHPEV-AAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc-----cChHHH-HHHHHHHHHHHHHhcchhHHHHHH
Confidence 2222 2223466778888888777532110000000 001111 223334455666677788777776
Q ss_pred HHhccHHHHHHHHh-----hcCCHHHHHHHHHHhCCHHHHHHHHHHc
Q 000162 1038 KAFHSMDLMRNFLK-----SKSCFDELLVLEEEAGNFMDAANIARLT 1079 (1987)
Q Consensus 1038 k~~~s~d~aa~fL~-----k~~~~dEaiell~kaG~f~EA~~iAkq~ 1079 (1987)
+..-..- .+.+. -.+-...+..++..+|+|.||.+++++.
T Consensus 349 q~al~i~--~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 349 QKALKIY--LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHH--HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6211111 01111 1123445667888888888888888774
No 111
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.21 E-value=0.0072 Score=77.12 Aligned_cols=137 Identities=20% Similarity=0.124 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHcCCHHHH----------HHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 000162 899 VILREAANIFEAIGKADSA----------AKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF 968 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkA----------Ak~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd 968 (1987)
...+..+..+++.|.++.| -++..++|+.+.|.+++.+......+++.|+..-..|+++-|.++|.+++|
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 3456677777777777777 356678999999999987766678899999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHH
Q 000162 969 FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRN 1048 (1987)
Q Consensus 969 ~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~ 1048 (1987)
+++..=+|.-.|+-+++.+++..- ...|++-.|. .
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~~~a--------------------------------~~~~~~n~af-------------~ 410 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLAKIA--------------------------------EERGDINIAF-------------Q 410 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH--------------------------------HHTT-HHHHH-------------H
T ss_pred ccccHHHHHHhCCHHHHHHHHHHH--------------------------------HHccCHHHHH-------------H
Confidence 999999988888766555554111 1223322211 1
Q ss_pred HHhhcCCHHHHHHHHHHhCCHHHHHHHHHHcC
Q 000162 1049 FLKSKSCFDELLVLEEEAGNFMDAANIARLTG 1080 (1987)
Q Consensus 1049 fL~k~~~~dEaiell~kaG~f~EA~~iAkq~G 1080 (1987)
.+--.|++++.++++.+.|++.+|+-.|+.+|
T Consensus 411 ~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIETGRLPEAALFARTYG 442 (443)
T ss_dssp HHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 11235788889999999999999998887764
No 112
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.12 E-value=0.0015 Score=87.51 Aligned_cols=156 Identities=16% Similarity=0.054 Sum_probs=93.1
Q ss_pred CCCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC--CCCceecccccC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL--GHPKHLLSMQYR 78 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~--g~p~~~L~~QYR 78 (1987)
.+|++|+|||+..+...+.-+.-.+ ....++++|||+.| .|. ...|.+...|.++... +...+.|+++||
T Consensus 206 ~~~~~ilVDE~QDtn~~Q~~ll~~l~~~~~~l~~VGD~~Q--sIY-----~frGA~~~~~~~f~~~~~~~~~~~L~~NyR 278 (672)
T PRK10919 206 NKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQ--SIY-----SWRGARPQNLVLLSQDFPALQVIKLEQNYR 278 (672)
T ss_pred hcCCEEEEEchhcCCHHHHHHHHHHHcCCCEEEEEcCCcc--ccc-----ccCCCChHHHHHHHHhCCCCcEEECCCCCC
Confidence 4699999999999998775433222 23468999999999 222 2234444555554331 345688999999
Q ss_pred CCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhh
Q 000162 79 MHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWV 158 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~ 158 (1987)
++|.|..+.|..+-.+.-. . ..... ...+...++.++.. . .-..|+..|+..+..... .
T Consensus 279 s~~~I~~~an~li~~n~~~-~---~k~~~----~~~~~g~~~~~~~~-~----------~~~~ea~~i~~~i~~~~~--~ 337 (672)
T PRK10919 279 SSGRILKAANILIANNPHV-F---EKRLF----SELGYGDELKVLSA-N----------NEEHEAERVTGELIAHHF--V 337 (672)
T ss_pred CcHHHHHHHHHHHhhCccc-c---ccccc----cCCCCCCceEEEcC-C----------CHHHHHHHHHHHHHHHHH--h
Confidence 9999999999766332110 0 00000 00010112222222 1 013567666543322211 1
Q ss_pred cccCCccEEEEccCHHHHHHHHHHhhh
Q 000162 159 ESKEKLSIGIVSPYSAQVIAIQEKLGS 185 (1987)
Q Consensus 159 ~~~~~~sIgIITPY~aQv~~Ir~~L~~ 185 (1987)
.+.+..+|+|++.-+.|...+.+.|.+
T Consensus 338 ~~~~~~diAVL~Rs~~~~~~le~~L~~ 364 (672)
T PRK10919 338 NKTQYKDYAILYRGNHQSRVFEKFLMQ 364 (672)
T ss_pred cCCCcCcEEEEEeCchhHHHHHHHHHH
Confidence 234567999999999999999998865
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.15 Score=67.79 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccch-h---HHHHHhhhHHh-------------------------hhhh
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYW-E---GRSKATGLKAA-------------------------SDHI 889 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~l-a---~la~A~~l~~a-------------------------A~~l 889 (1987)
-.+|+.|-++|...+..+....|+.-|.||.|+.- . ..+...+.++. |.--
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTN 1180 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhc
Confidence 56999999999999999999999999999999521 1 11211111100 0000
Q ss_pred hcCChHH------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHH---------------
Q 000162 890 RSSNPLE------------------ANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEE--------------- 936 (1987)
Q Consensus 890 ~s~~~~e------------------a~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e--------------- 936 (1987)
+-.+.++ ..+.|+.|--+|....++.+-+.....+|+|+-|++-+++
T Consensus 1181 rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1181 RLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred hHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 0000000 1123555555566667777777777777777777765443
Q ss_pred ---------hcC------hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 937 ---------RCG------KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 937 ---------~~~------~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.|| ...+.+.-++|+..|.|++-+.+.+.+
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 233 233667778888888887777665544
No 114
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.01 E-value=0.0032 Score=75.19 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEK 867 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~r 867 (1987)
++...+|..++..|+++.|..++.+
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~ 33 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKK 33 (280)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4566779999999999999999954
No 115
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.98 E-value=0.00027 Score=81.79 Aligned_cols=50 Identities=34% Similarity=0.491 Sum_probs=35.8
Q ss_pred eeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhhhhhhcccccccCcEEeccccccc
Q 000162 720 LVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNEAKHNVLCPELKQLYVAITRTRQR 799 (1987)
Q Consensus 720 ~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~ 799 (1987)
-++|+|++||+|||.|+++-..... ...+....+.+|||+||||+.
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~~~----------------------------------~~~~~~~~~~~~VALTR~~~~ 229 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSDTD----------------------------------NELYSESRNHLYVALTRHTKS 229 (234)
T ss_pred ceechHHcceEEeCCEEEEECCCcc----------------------------------cccccCCcccEEEEccccccE
Confidence 3899999999999999997522100 000111137799999999999
Q ss_pred chhc
Q 000162 800 LWIW 803 (1987)
Q Consensus 800 LvIv 803 (1987)
|.|+
T Consensus 230 l~i~ 233 (234)
T PF01443_consen 230 LVIL 233 (234)
T ss_pred EEEE
Confidence 9875
No 116
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.036 Score=64.25 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 896 EANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 896 ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
.+...|.+|+.-|..+.+|++|..|.
T Consensus 29 gaas~yekAAvafRnAk~feKakdcL 54 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCL 54 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34455666666666666665554444
No 117
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.95 E-value=0.28 Score=67.42 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=99.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHcC-------------------
Q 000162 1020 CALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLTG------------------- 1080 (1987)
Q Consensus 1020 cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~G------------------- 1080 (1987)
.+..|...|++++|...++..-..+.... -............+.+.|++++|...+....
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~-~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIA-DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 34566667777777666553211100000 0000011222334567788888877755431
Q ss_pred CH----HHHHHHHHHcCCHHHHHHHHHHH------------HHHhhhcCCCCCCCCchhhhhHHHHHHHHHHHhhhcccc
Q 000162 1081 DI----LLTADLLQKAGNFKEACNLTLNY------------VLSNSLWSPGSKGWPLKQFTEKKELFEKAKSLAKSNSNQ 1144 (1987)
Q Consensus 1081 d~----l~Aae~L~kAg~fdeA~rL~l~~------------~~~~~LW~~~~~g~p~k~f~~k~~ll~~a~~~a~~~~~~ 1144 (1987)
.+ ...+..+...|++++|..++-.- .++..+ ...|+| .+=+++|++|+...-++...
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~---~~~g~~----~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL---QARGWP----RAAENELKKAEVLEPRNINL 429 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HhcCCH----HHHHHHHHHHHhhCCCChHH
Confidence 11 23466777789999998875543 222222 122333 55577888888877666555
Q ss_pred chhhhhhhhcccccCcchHHHHHHHHhhhccCCcceeehhhhhHhhhhccccccccccccchhhhchhhhhhh-hhhccc
Q 000162 1145 FYEFVCTEASILSNDESDLFIMNQQLNASKRHQSICGETLSARKILDCHLKTNSCKYGWEDEFVLDLKAYSEE-TICRNW 1223 (1987)
Q Consensus 1145 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1223 (1987)
.|..+-+-.. .++-.-.-.+...+.+. ..--..+....+.+|+|=.. ...++...+. |+.. ....|-
T Consensus 430 ~~~~a~~al~--~~~~~~A~~~~~~ll~~---~Pd~~~~~~~~~~~~~~~~~---~l~~~~~~~~----~~~~~~~~~~~ 497 (765)
T PRK10049 430 EVEQAWTALD--LQEWRQMDVLTDDVVAR---EPQDPGVQRLARARDVHHMA---ELRIAGSTGL----DSDGPDSGKHD 497 (765)
T ss_pred HHHHHHHHHH--hCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHhccCc---eEEEEecccC----CCCCCccccCc
Confidence 5444432211 12212222223333332 11234567788888888433 1122222211 1112 235588
Q ss_pred cccceeeh---hhhhhh
Q 000162 1224 VTVQTLVY---FWDYWK 1237 (1987)
Q Consensus 1224 ~~~~~~~~---~w~~~~ 1237 (1987)
.+.+|-+| +++.|.
T Consensus 498 ~~~~~~~ys~~~~~~~r 514 (765)
T PRK10049 498 VDITTILYSPPLADNWR 514 (765)
T ss_pred CcceeEEecCccCCCee
Confidence 99999998 667775
No 118
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=96.88 E-value=0.072 Score=69.11 Aligned_cols=207 Identities=12% Similarity=0.024 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHhCCHHHHHHHHHHhcC--hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHH
Q 000162 896 EANVILREAANIFEAIG-KADSAAKCFYDLGEYERAGKIYEERCG--KPELEKAGECFFLAGQYKHAAEVYARGNFFSEC 972 (1987)
Q Consensus 896 ea~~~y~eAAelYe~~G-~~dkAAk~y~kaGdyekA~eLy~e~~~--~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kA 972 (1987)
.+.+.|+.|..++.+.. -+++-+++-++-.-|..+..+|+--+. +-.+...|.++..++.+-.||.+|+-.|.+.+|
T Consensus 875 ~yl~~ye~ALghl~E~~n~~~Ev~~yi~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea 954 (1243)
T COG5290 875 NYLSIYESALGHLNEDLNVIREVMKYICRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEA 954 (1243)
T ss_pred hhHHHHHHHHHhhHhHHHHHHHHHHHHHhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 35577888888887664 356667777788889999999875222 345888999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhh
Q 000162 973 LAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKS 1052 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k 1052 (1987)
+.+|..+++|.++..|..|-... +....+.+.....-..+.+++|...+. ..+
T Consensus 955 ~gay~sA~mwrec~si~~q~~~~------------e~~~~AE~L~S~l~ve~R~~~da~~i~------------l~y--- 1007 (1243)
T COG5290 955 HGAYDSALMWRECGSISTQEKGY------------EFNLCAELLPSDLLVEFRKAGDAEKIL------------LTY--- 1007 (1243)
T ss_pred HHHHHHHHHHHHHhhHHhhhcch------------HHHHHHHhhhhhHHHHHHHhcCHHHHH------------HHH---
Confidence 99999999999999888432221 122233333333223334456554333 222
Q ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhhHHH
Q 000162 1053 KSCFDELLVLEEEAGNFMDAANIARLTGDILLTADLLQKA---GNFKEACNLTLNYVLSNSLWSPGSKGWPLKQFTEKKE 1129 (1987)
Q Consensus 1053 ~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~kA---g~fdeA~rL~l~~~~~~~LW~~~~~g~p~k~f~~k~~ 1129 (1987)
.+...+|.-++++.-.+.+|+.+|...+.....-+..... +--..+++++-.|.+.+| -|..+.-...|+.
T Consensus 1008 l~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikS------q~~rlrvlr~kk~ 1081 (1243)
T COG5290 1008 LENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKS------QGDRLRVLRDKKC 1081 (1243)
T ss_pred HhCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHH------HHHHHHHHhhhhh
Confidence 3467788888999999999999999887755443333221 112335566666776664 2444555555554
Q ss_pred HHHHHH
Q 000162 1130 LFEKAK 1135 (1987)
Q Consensus 1130 ll~~a~ 1135 (1987)
+--.|.
T Consensus 1082 e~p~a~ 1087 (1243)
T COG5290 1082 EMPEAR 1087 (1243)
T ss_pred cChHHH
Confidence 444443
No 119
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.83 E-value=0.0033 Score=84.44 Aligned_cols=157 Identities=15% Similarity=0.057 Sum_probs=92.2
Q ss_pred CCCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHh-C-CCCceecccccC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY-L-GHPKHLLSMQYR 78 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~-~-g~p~~~L~~QYR 78 (1987)
.+|++|+|||+...+..+.-+.-.+ .....+.+|||+.|- |. ...|.+...|.++.. . +...+.|+++||
T Consensus 205 ~~~~~ilVDEfQD~~~~Q~~ll~~L~~~~~~l~~vGD~~Qs--IY-----~frga~~~~~~~~~~~~~~~~~~~L~~NyR 277 (664)
T TIGR01074 205 NKIRYLLVDEYQDTNTSQYELVKLLVGDRARFTVVGDDDQS--IY-----SWRGARPENLVLLKEDFPQLKVIKLEQNYR 277 (664)
T ss_pred HhCCEEEEeehccCCHHHHHHHHHHhcCCCeEEEEcCCccc--cc-----CCCCCCHHHHHHHHHhCCCCeEEECCCCCC
Confidence 3689999999999997775333222 234689999999991 11 112223333433332 1 334678999999
Q ss_pred CCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhh
Q 000162 79 MHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWV 158 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~ 158 (1987)
++|+|.++.|..|-.+. ...... .....+..+++.++.. . ....|++.|...+..... .
T Consensus 278 s~~~Il~~~n~l~~~~~-----~~~~~~---~~~~~~~g~~v~~~~~-~----------~~~~Ea~~ia~~I~~~~~--~ 336 (664)
T TIGR01074 278 STGRILKAANILIANNP-----HVFEKK---LFSELGYGEKIKVIEC-N----------NEEHEAERIAGEIIAHKL--V 336 (664)
T ss_pred ChHHHHHHHHHHHhcCc-----cccccc---ccccCCCCCceEEEeC-C----------CHHHHHHHHHHHHHHHHH--c
Confidence 99999999997543221 000000 0000011112333322 1 123577777766542211 1
Q ss_pred cccCCccEEEEccCHHHHHHHHHHhhhh
Q 000162 159 ESKEKLSIGIVSPYSAQVIAIQEKLGSK 186 (1987)
Q Consensus 159 ~~~~~~sIgIITPY~aQv~~Ir~~L~~~ 186 (1987)
.+.+..+|+|++..+.|...+...|.+.
T Consensus 337 ~~~~~~diAVL~R~~~~~~~l~~~l~~~ 364 (664)
T TIGR01074 337 NKTQYKDYAILYRGNHQSRLLEKALMQN 364 (664)
T ss_pred CCCCcccEEEEEecCchHHHHHHHHHHc
Confidence 1346689999999999999999988653
No 120
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.81 E-value=0.08 Score=59.15 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
.+..+..+|..++..|+++.|...|.++-... |.. ...+...+..|...|++++|.+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---------------------p~~-~~~~~~la~~~~~~~~~~~A~~~ 87 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD---------------------PDD-YLAYLALALYYQQLGELEKAEDS 87 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------ccc-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 45677888999999999999999998762210 000 11234456777777888888777
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|.++... ....+...|.++...|++++|.+.|.++
T Consensus 88 ~------~~al~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 88 F------RRALTLNPN--NGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred H------HHHHhhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 7 444443211 1234556677777777777777777765
No 121
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.76 E-value=0.0011 Score=82.26 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=31.0
Q ss_pred cccCHHHHHhhcc--CCcEEEEcCCCCChhHHHHHHHHh
Q 000162 512 FEVTDEQLEMILF--PRSTFILGRSGTGKTTILTMKLFQ 548 (1987)
Q Consensus 512 I~l~~eQk~AI~~--~~~~iItGgPGTGKTTVIIikl~~ 548 (1987)
..||..|++|.-. .|+-.|.|=.|+|||.++.+|+..
T Consensus 161 anfD~~Q~kaa~~~~~G~qrIrGLAGSGKT~~La~Kaa~ 199 (660)
T COG3972 161 ANFDTDQTKAAFQSGFGKQRIRGLAGSGKTELLAHKAAE 199 (660)
T ss_pred hcccchhheeeeecCCchhhhhcccCCCchhHHHHHHHH
Confidence 4678889888655 777799999999999999888775
No 122
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.75 E-value=0.21 Score=63.28 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhcccc-hhHHHHHhhhHHhhh-hhhcCChHHHHHHHHHHHHHHHHcCCHH--HHHHHHH
Q 000162 847 SRGIKLFYENNYEMATICFEKAKDTY-WEGRSKATGLKAASD-HIRSSNPLEANVILREAANIFEAIGKAD--SAAKCFY 922 (1987)
Q Consensus 847 klA~~l~~~g~ye~A~k~F~rAgd~~-la~la~A~~l~~aA~-~l~s~~~~ea~~~y~eAAelYe~~G~~d--kAAk~y~ 922 (1987)
..|...+..|+|+.|.++..++.+.. ...+. +.+ ++. .....++..+...+.+|++......-.. .+++.+.
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~--~ll--aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAEQPVVN--YLL--AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccchHHH--HHH--HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 45777777899999998888765521 10000 000 011 1223334444444555544322222111 3467777
Q ss_pred HhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 923 DLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
..|++++|.+.+++.-. ...+.-.++.|...|+|++|.+++.+.
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l 213 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM 213 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777777665221 344666777777777777777666554
No 123
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.74 E-value=0.19 Score=67.78 Aligned_cols=240 Identities=9% Similarity=-0.008 Sum_probs=122.4
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHc-CCHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAI-GKAD 915 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~-G~~d 915 (1987)
..+++.++.+|...+..|+++.|...|.++-. +.....-...+. ......+...+...|.+|..+.-.. .-+.
T Consensus 73 p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~----~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~ 148 (656)
T PRK15174 73 KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS----VLLKSKQYATVADLAEQAWLAFSGNSQIFA 148 (656)
T ss_pred CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH----HHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 44677788888888888888888888887532 111100000000 0011112222222233332221100 0011
Q ss_pred HHHHHHHHhCCHHHHHHHHHHh----cC-hhHHHHHHHHHHHcCCHHHHHHHHHhcCCH---------HHHHHHHHhcCC
Q 000162 916 SAAKCFYDLGEYERAGKIYEER----CG-KPELEKAGECFFLAGQYKHAAEVYARGNFF---------SECLAVCSRGEL 981 (1987)
Q Consensus 916 kAAk~y~kaGdyekA~eLy~e~----~~-~~ll~~aAe~fE~agqy~kAAeLYeKaGd~---------~kAIemy~kak~ 981 (1987)
..+.++...|++++|+..|... .+ ...+...+ .+...|++.+|.++|.++-.. ..+..++.+.++
T Consensus 149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~ 227 (656)
T PRK15174 149 LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK 227 (656)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC
Confidence 2244555555555555554432 11 12232333 367789999999988774111 122456778888
Q ss_pred hHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHhccHHHHHHHHhhcCCHH
Q 000162 982 FDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKS----MMKFVKAFHSMDLMRNFLKSKSCFD 1057 (1987)
Q Consensus 982 wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~----Am~~vk~~~s~d~aa~fL~k~~~~d 1057 (1987)
+++|.+..++..+....+. .....-+..|...|++++ |+..+...-..+ .. ...-+.
T Consensus 228 ~~eA~~~~~~al~~~p~~~--------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~---~~~a~~ 288 (656)
T PRK15174 228 YQEAIQTGESALARGLDGA--------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SD---NVRIVT 288 (656)
T ss_pred HHHHHHHHHHHHhcCCCCH--------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CC---CHHHHH
Confidence 8988888876554322110 111223556777788775 444443211110 00 001123
Q ss_pred HHHHHHHHhCCHHHHHHHHHHc----CCHH----HHHHHHHHcCCHHHHHHHH
Q 000162 1058 ELLVLEEEAGNFMDAANIARLT----GDIL----LTADLLQKAGNFKEACNLT 1102 (1987)
Q Consensus 1058 Eaiell~kaG~f~EA~~iAkq~----Gd~l----~Aae~L~kAg~fdeA~rL~ 1102 (1987)
....++...|++++|...+++. .+.. .-+..+.+.|++++|...+
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456677788888887777654 2211 1256667778888888875
No 124
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.07 Score=64.15 Aligned_cols=147 Identities=15% Similarity=0.189 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCC---H-----HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHH
Q 000162 943 LEKAGECFFLAGQYKHAAEVYARGNF---F-----SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQ 1014 (1987)
Q Consensus 943 l~~aAe~fE~agqy~kAAeLYeKaGd---~-----~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~ 1014 (1987)
+.+.|+-|..+|-++.|.++|...-+ + .-.+.+|...+.|++|+..++++......+.. -++++
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~--------~eIAq 181 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR--------VEIAQ 181 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch--------hHHHH
Confidence 66899999999999999999998744 2 34566899999999999999887765443211 13443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHH---HHHHHHHhCCHHHHHHHHH----HcCCHHHH--
Q 000162 1015 DFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDE---LLVLEEEAGNFMDAANIAR----LTGDILLT-- 1085 (1987)
Q Consensus 1015 ~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dE---aiell~kaG~f~EA~~iAk----q~Gd~l~A-- 1085 (1987)
-|-+- |..+....|.+.|+..++..-..+ ..+... .-+++...|+|..|.+... +..+++-+
T Consensus 182 fyCEL-Aq~~~~~~~~d~A~~~l~kAlqa~--------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 182 FYCEL-AQQALASSDVDRARELLKKALQAD--------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred HHHHH-HHHHhhhhhHHHHHHHHHHHHhhC--------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 34444 334455567777777666432222 111111 1145556677776665444 33444433
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHH
Q 000162 1086 ---ADLLQKAGNFKEACNLTLNYV 1106 (1987)
Q Consensus 1086 ---ae~L~kAg~fdeA~rL~l~~~ 1106 (1987)
.+.|.+-|+.++....+..++
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444566688887777655554
No 125
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.031 Score=73.41 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=110.7
Q ss_pred HHHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc-C--CHHHHHHHHHhcCChHHHHHHH
Q 000162 918 AKCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG-N--FFSECLAVCSRGELFDIGLQYI 989 (1987)
Q Consensus 918 Ak~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa-G--d~~kAIemy~kak~wd~AlrLi 989 (1987)
+.+.++-.+|.-|+.|++.... .+.+++.|.++...|+|++|..-|.+. | +....|.=|.+++...++..++
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YL 420 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYL 420 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHH
Confidence 4444444555555555544221 456889999999999999999999997 3 3345555555666556666666
Q ss_pred HHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCH
Q 000162 990 NYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNF 1069 (1987)
Q Consensus 990 ~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f 1069 (1987)
+...+...+.. ++...--.+|.+++|.++.+++++.....+ ..=+++.|++++.+++-.
T Consensus 421 e~L~~~gla~~--------------dhttlLLncYiKlkd~~kL~efI~~~~~g~-------~~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 421 EALHKKGLANS--------------DHTTLLLNCYIKLKDVEKLTEFISKCDKGE-------WFFDVETALEILRKSNYL 479 (933)
T ss_pred HHHHHcccccc--------------hhHHHHHHHHHHhcchHHHHHHHhcCCCcc-------eeeeHHHHHHHHHHhChH
Confidence 55444322211 112222458999999999998888765222 133678888888889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc-CCHHHHHHH
Q 000162 1070 MDAANIARLTGDILLTADLLQKA-GNFKEACNL 1101 (1987)
Q Consensus 1070 ~EA~~iAkq~Gd~l~Aae~L~kA-g~fdeA~rL 1101 (1987)
++|..+|+..+......+.+... ++|++|.+-
T Consensus 480 ~~a~~LA~k~~~he~vl~ille~~~ny~eAl~y 512 (933)
T KOG2114|consen 480 DEAELLATKFKKHEWVLDILLEDLHNYEEALRY 512 (933)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHH
Confidence 99999999888877777766665 888888875
No 126
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.71 E-value=0.0011 Score=82.64 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=41.6
Q ss_pred ccCHHHHHhhcc---------CCcEEEEcCCCCChhHHH--HHHHHhhhhhhhhhhccccCCccch-------hHHhhhc
Q 000162 513 EVTDEQLEMILF---------PRSTFILGRSGTGKTTIL--TMKLFQNEKHHRMAKEQFDGVNNSL-------TLHTSWE 574 (1987)
Q Consensus 513 ~l~~eQk~AI~~---------~~~~iItGgPGTGKTTVI--Iikl~~~~~raa~a~~~l~~~~~Aa-------TIHrLLe 574 (1987)
.|+++|++++.. +..++|+|++|||||+++ |...++..... -.-+++++.|| |+|+...
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~---~~~~a~tg~AA~~i~~G~T~hs~f~ 77 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKK---VLVTAPTGIAAFNIPGGRTIHSFFG 77 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccce---EEEecchHHHHHhccCCcchHHhcC
Confidence 478889888554 678999999999999999 66666543211 00112333333 9999888
Q ss_pred ccc
Q 000162 575 VEA 577 (1987)
Q Consensus 575 ~~~ 577 (1987)
+..
T Consensus 78 i~~ 80 (364)
T PF05970_consen 78 IPI 80 (364)
T ss_pred ccc
Confidence 753
No 127
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.04 Score=68.55 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccc---hh-------------HHHHHhhhHHhhhhhhcCChHHHHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTY---WE-------------GRSKATGLKAASDHIRSSNPLEANVILRE 903 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~---la-------------~la~A~~l~~aA~~l~s~~~~ea~~~y~e 903 (1987)
.....|--+|-.+...++-..|..+|++|=|.. .. +-..+.-..++|..++..++. .+.-
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR----lw~a 437 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR----LWVA 437 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH----HHHH
Confidence 356689999999999999999999999987631 11 111122223445555544443 3567
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC--hhHHHHHHHHHHHcCCHHHHHHHHHhcCC-----------HH
Q 000162 904 AANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG--KPELEKAGECFFLAGQYKHAAEVYARGNF-----------FS 970 (1987)
Q Consensus 904 AAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~--~~ll~~aAe~fE~agqy~kAAeLYeKaGd-----------~~ 970 (1987)
.++.|++.++.++|++|| .+|+.. ++ ...+.+.|+.+++.+++.+||++|++.=+ ..
T Consensus 438 LG~CY~kl~~~~eAiKCy------krai~~----~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCY------KRAILL----GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred HHHHHHHhccHHHHHHHH------HHHHhc----cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 789999999999999999 455543 22 25688999999999999999999988622 22
Q ss_pred HHH----HHHHhcCChHHHHHHHHH
Q 000162 971 ECL----AVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 971 kAI----emy~kak~wd~AlrLi~q 991 (1987)
+|. +.+.+.++|++|..++..
T Consensus 508 ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 508 KARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHH
Confidence 332 234577778877776643
No 128
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=0.039 Score=71.29 Aligned_cols=147 Identities=17% Similarity=0.138 Sum_probs=99.0
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhH----------Hhhh-hh---hcCChHHHHHHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLK----------AASD-HI---RSSNPLEANVILREA 904 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~----------~aA~-~l---~s~~~~ea~~~y~eA 904 (1987)
..+|+-|-.+|.-+=-|++++.|++||.||-...- ..+.|+-+. +.|. .. ...++.- -..+.-.
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-YnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-YNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-hHHHHhh
Confidence 56999999999999999999999999999876321 112222111 0000 00 0111211 1235566
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC-hhHHHHHHHHHHHcCCHHHHHHHHHhc---------CCHHHHHH
Q 000162 905 ANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG-KPELEKAGECFFLAGQYKHAAEVYARG---------NFFSECLA 974 (1987)
Q Consensus 905 AelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~-~~ll~~aAe~fE~agqy~kAAeLYeKa---------Gd~~kAIe 974 (1987)
+-.|.+.++++.|.-.| ++|+++= .. ..++--++..+.+.|+.++|.++|.+| -.|. .+.
T Consensus 496 G~vy~Kqek~e~Ae~~f------qkA~~IN---P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~ 565 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHF------QKAVEIN---PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RAS 565 (638)
T ss_pred hhheeccchhhHHHHHH------HhhhcCC---ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHH
Confidence 77777888888887776 6677661 11 244667899999999999999999999 2233 445
Q ss_pred HHHhcCChHHHHHHHHHhhhccc
Q 000162 975 VCSRGELFDIGLQYINYWKQHVD 997 (1987)
Q Consensus 975 my~kak~wd~AlrLi~qy~~~~e 997 (1987)
++...+.+++|++.++..++-..
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCc
Confidence 77778889999999987766543
No 129
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=96.38 E-value=0.1 Score=67.75 Aligned_cols=186 Identities=13% Similarity=0.075 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHc-----CCHHHHHHHHHh-cCCHHHH
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLA-----GQYKHAAEVYAR-GNFFSEC 972 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~a-----gqy~kAAeLYeK-aGd~~kA 972 (1987)
+.+.+||.+|+..|++.+|...|..+++|++++.|..+..+ ..++.+|+-+... .++-.|+.+-.. ..+..+|
T Consensus 936 ~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~-~e~~~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~ea 1014 (1243)
T COG5290 936 LYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKG-YEFNLCAELLPSDLLVEFRKAGDAEKILLTYLENLYEA 1014 (1243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcc-hHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHHHH
Confidence 45889999999999999999999999999999988766222 3366777665542 223334443332 4778889
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHH---HHHHHHHHhcCCHHHHHHHHHHhccHHHHHHH
Q 000162 973 LAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFL---QSCALHYYQLNDKKSMMKFVKAFHSMDLMRNF 1049 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~l---e~cA~~ylklgD~~~Am~~vk~~~s~d~aa~f 1049 (1987)
+.|++++..+++|..++..-... +...+ ..+-.+...|. +.+|.+|.+.+..-.+++.++.-...+-.+.+
T Consensus 1015 va~~ckgs~y~ea~~~a~~s~~~-e~~k~-----~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~kk~e~p~a~~ 1088 (1243)
T COG5290 1015 VAMDCKGSEYREAFCEAMVSRLV-ESEKH-----YEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDKKCEMPEARE 1088 (1243)
T ss_pred HHHHcccccchHHHHHHHHhhhh-hHHHH-----hhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcChHHHH
Confidence 99999999999998877422111 11000 11222333342 45566666655544455544432222211111
Q ss_pred H--hhcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 1050 L--KSKSCFDELLVLEEEAGNFMDAANIARLTGDILLTADLLQK 1091 (1987)
Q Consensus 1050 L--~k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~k 1091 (1987)
- ++..-.++......+-..-.+|+..+.+.+.+..+-....+
T Consensus 1089 ~~~~e~~t~dDvs~a~~~~st~~s~~t~ytk~~~~sk~sr~ttk 1132 (1243)
T COG5290 1089 ILREELLTLDDVSEAFVKYSTRLSALTEYTKDECMSKTSRSTTK 1132 (1243)
T ss_pred hhhhhhcCccchhhhhhhhhhHHHHHHHHhcccccchhhhhhhh
Confidence 1 11122233333334444455555555544444444333333
No 130
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=96.36 E-value=0.00056 Score=82.88 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=43.0
Q ss_pred ccEEEeccCCCCCcccCEEEEEecccCCCCc---c----cCCCCCCceEEecccccccEEEEcch
Q 000162 193 FAVKVKSIDGFQGGEEDIIIISTVRSNNTGS---I----GFASTPQRINVALTRARHCLWILGSE 250 (1987)
Q Consensus 193 ~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~---i----GFL~d~nRLNVALTRAK~~LiIVGn~ 250 (1987)
..|.|.|||++.|.|+|+|++.....+.-+. + .+-.+.|.++||+||||+.|+|++..
T Consensus 286 ~~V~i~TiH~sKGLEf~~V~v~~~~~~~~p~~~~~~~~~~~~Ee~rl~YVA~TRAk~~L~l~~~~ 350 (351)
T PF13361_consen 286 DGVQIMTIHKSKGLEFDIVFVPGLNEGTFPSYRSIEDRQELEEERRLFYVAMTRAKERLYLSYPK 350 (351)
T ss_dssp GSEEEEECGGGTT--EEEEEEETTBTBTTTCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEC
T ss_pred cCcEEeeheeccccCCCeEEEecccCCcChHHHHHhhHhhhHHHHhHheEecchhhceEEEEEec
Confidence 4799999999999999999998764442111 1 12245677999999999999999863
No 131
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.28 E-value=0.79 Score=58.20 Aligned_cols=87 Identities=10% Similarity=-0.003 Sum_probs=48.3
Q ss_pred CHHHHHHH-HHHHHHhcCHHHHHHHHHHhcccch-hHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcC----C-
Q 000162 841 SPEEWKSR-GIKLFYENNYEMATICFEKAKDTYW-EGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIG----K- 913 (1987)
Q Consensus 841 tpeeWkkl-A~~l~~~g~ye~A~k~F~rAgd~~l-a~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G----~- 913 (1987)
+|..-..+ |..+...|+++.|...|.++....- ..+.. ........+ ..+.+++|...+++.- +
T Consensus 116 ~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~--~l~~a~l~l-------~~g~~~~Al~~l~~~~~~~P~~ 186 (398)
T PRK10747 116 QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV--EITRVRIQL-------ARNENHAARHGVDKLLEVAPRH 186 (398)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHH-------HCCCHHHHHHHHHHHHhcCCCC
Confidence 35544445 5555888999999999999765211 11111 001011111 2233444444444321 1
Q ss_pred ---HHHHHHHHHHhCCHHHHHHHHHH
Q 000162 914 ---ADSAAKCFYDLGEYERAGKIYEE 936 (1987)
Q Consensus 914 ---~dkAAk~y~kaGdyekA~eLy~e 936 (1987)
....+++|.+.|+|++|.+++..
T Consensus 187 ~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 187 PEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 23457888888888888877665
No 132
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.24 E-value=0.3 Score=65.30 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
-.+.-|+.+|.....+|+.+.|..++..|.. +. |... ..+-..+++.++.|.+++|+-
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------L~---p~d~-e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------LN---PKDY-ELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------cC---CCCh-HHHHHHHHHHHhcccHHHHHH
Confidence 4667788888888888887777776664332 11 1122 457788899999999999999
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc----C--CH-------HHHHHHHHhcCChHHHH
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----N--FF-------SECLAVCSRGELFDIGL 986 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----G--d~-------~kAIemy~kak~wd~Al 986 (1987)
|| .||+.+-- ...+.+.+-+.-|.+.|++..|++-|.+. + ++ ..++..+...+.-+.|.
T Consensus 229 cy------~rAI~~~p--~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 229 CY------SRAIQANP--SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HH------HHHHhcCC--cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99 67776611 11356777888999999999999988886 2 22 23455556666557777
Q ss_pred HHHHHhhh
Q 000162 987 QYINYWKQ 994 (1987)
Q Consensus 987 rLi~qy~~ 994 (1987)
++++.+..
T Consensus 301 ~~le~~~s 308 (895)
T KOG2076|consen 301 KALEGALS 308 (895)
T ss_pred HHHHHHHh
Confidence 77765544
No 133
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.025 Score=71.86 Aligned_cols=160 Identities=13% Similarity=0.062 Sum_probs=116.1
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchh-HHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHH
Q 000162 830 DSLAQAMQVASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWE-GRSKATGLKAASDHIRSSNPLEANVILREAANIF 908 (1987)
Q Consensus 830 e~la~~la~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la-~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelY 908 (1987)
.+.++.+-+....+.--+.|.-++++|..++|+.. +.|+... .++...+..+.|..+... ......+.+.++.+
T Consensus 602 ~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~---s~D~d~rFelal~lgrl~iA~~la~e--~~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 602 LEVADGVLPTIPKEIRTKVAHFLESQGMKEQALEL---STDPDQRFELALKLGRLDIAFDLAVE--ANSEVKWRQLGDAA 676 (794)
T ss_pred ccccccccccCchhhhhhHHhHhhhccchHhhhhc---CCChhhhhhhhhhcCcHHHHHHHHHh--hcchHHHHHHHHHH
Confidence 33344333333344556677778888888887765 4443221 233333222222222100 01134689999999
Q ss_pred HHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHH
Q 000162 909 EAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQY 988 (1987)
Q Consensus 909 e~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrL 988 (1987)
.+.|++..|.+||.++.+|.--.-+|-..++.+.+..+|.-.+++|..-.|--.|-..|++++|++++++.+.+-+|.-+
T Consensus 677 l~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ 756 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALF 756 (794)
T ss_pred hhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHH
Confidence 99999999999999999999888887765667779999999999999999999999999999999999999988888888
Q ss_pred HHHhhh
Q 000162 989 INYWKQ 994 (1987)
Q Consensus 989 i~qy~~ 994 (1987)
+..|..
T Consensus 757 ArtYlp 762 (794)
T KOG0276|consen 757 ARTYLP 762 (794)
T ss_pred HhhhCh
Confidence 877765
No 134
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.15 E-value=0.075 Score=65.24 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKA 868 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rA 868 (1987)
++......|...+..|+++.|...|..|
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 5555666788889999999999999876
No 135
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.11 E-value=0.57 Score=64.45 Aligned_cols=176 Identities=10% Similarity=-0.076 Sum_probs=102.2
Q ss_pred HHhCCHHHHHHHHHHhcCh----h--HHHHHHHHHHHcCCHHHHHHHHHhc--CC-------HHHHHH---HHHhcCChH
Q 000162 922 YDLGEYERAGKIYEERCGK----P--ELEKAGECFFLAGQYKHAAEVYARG--NF-------FSECLA---VCSRGELFD 983 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~----~--ll~~aAe~fE~agqy~kAAeLYeKa--Gd-------~~kAIe---my~kak~wd 983 (1987)
...|++++|+..|+..... . ...-.|..+...|++++|.++|.++ .+ ...... ++.+.+.++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 4667888888887764321 1 1223688999999999999999986 22 122233 567889999
Q ss_pred HHHHHHHHhhhcccccchhhhh-hHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHH
Q 000162 984 IGLQYINYWKQHVDTDVGLVRR-SKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVL 1062 (1987)
Q Consensus 984 ~AlrLi~qy~~~~e~e~~~~~r-a~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiel 1062 (1987)
+|.+++++.............. ...............+..+...|++++|++.+...-... . ...+..-..+.+
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P---~n~~l~~~lA~l 402 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--P---GNQGLRIDYASV 402 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C---CCHHHHHHHHHH
Confidence 9999987655432110000000 000000000112233567788899999998766421110 0 011223445567
Q ss_pred HHHhCCHHHHHHHHHHc----CCH----HHHHHHHHHcCCHHHHHHHH
Q 000162 1063 EEEAGNFMDAANIARLT----GDI----LLTADLLQKAGNFKEACNLT 1102 (1987)
Q Consensus 1063 l~kaG~f~EA~~iAkq~----Gd~----l~Aae~L~kAg~fdeA~rL~ 1102 (1987)
+...|++++|.+.+++. ++- ...+..+...|+|++|..++
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 78889999998888875 221 12244566678899988874
No 136
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.04 E-value=0.35 Score=67.78 Aligned_cols=136 Identities=12% Similarity=0.107 Sum_probs=66.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC-------HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHH
Q 000162 946 AGECFFLAGQYKHAAEVYARGNF-------FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQ 1018 (1987)
Q Consensus 946 aAe~fE~agqy~kAAeLYeKaGd-------~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le 1018 (1987)
.+...+..|++++|..+|.++=. +.....++.+.+.+++|....++..+....+. ....
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~--------------~a~~ 647 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS--------------NYQA 647 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------------HHHH
Confidence 34444455777777777776621 22233456667777777776655444322210 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc-------CCH-HHHHHHHH
Q 000162 1019 SCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT-------GDI-LLTADLLQ 1090 (1987)
Q Consensus 1019 ~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~-------Gd~-l~Aae~L~ 1090 (1987)
.-+..+...|++++|+..+...-..+ . ..........-++...|++++|...+++. ..+ ...++.+.
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~--P---~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGL--P---DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 23455666777777777655311100 0 00011223334555666666666665554 111 12244444
Q ss_pred HcCCHHHHHH
Q 000162 1091 KAGNFKEACN 1100 (1987)
Q Consensus 1091 kAg~fdeA~r 1100 (1987)
...+|+.|.+
T Consensus 723 ~~~~~~~a~~ 732 (987)
T PRK09782 723 QRFNFRRLHE 732 (987)
T ss_pred HHHHHHHHHH
Confidence 4455555555
No 137
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.097 Score=66.76 Aligned_cols=123 Identities=18% Similarity=0.138 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHh
Q 000162 913 KADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 913 ~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy 992 (1987)
+.++--++..++|+++-|-+|+.+...+..+++.|+++-+++++..|.|++.++.|+...+-++.-.++-+.+..+...-
T Consensus 639 D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 639 DPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred ChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHH
Confidence 34444677788999999999998877788899999999999999999999999999999998888877755444433111
Q ss_pred hhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHH
Q 000162 993 KQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDA 1072 (1987)
Q Consensus 993 ~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA 1072 (1987)
++... ...|=.+|. ..|+++++++++++.+++.||
T Consensus 719 ~~~g~-------------------~N~AF~~~~--------------------------l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 719 KKQGK-------------------NNLAFLAYF--------------------------LSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred Hhhcc-------------------cchHHHHHH--------------------------HcCCHHHHHHHHHhcCcCcHH
Confidence 11000 001111112 257888888889999999999
Q ss_pred HHHHHHcC
Q 000162 1073 ANIARLTG 1080 (1987)
Q Consensus 1073 ~~iAkq~G 1080 (1987)
+-+|+...
T Consensus 754 al~ArtYl 761 (794)
T KOG0276|consen 754 ALFARTYL 761 (794)
T ss_pred HHHHhhhC
Confidence 88887764
No 138
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.86 E-value=0.35 Score=54.03 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
.++.-|..+|..+...|+++.|.+.|.++-...- .+ ...+...+..|...|++++|.+
T Consensus 63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------------~~----~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------------NN----GDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------------CC----HHHHHHHHHHHHHcccHHHHHH
Confidence 3567888999999999999999999987643110 00 0123344566666777777777
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcC-----C---HHHHHHHHHhcCChHHHHHHHHH
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGN-----F---FSECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaG-----d---~~kAIemy~kak~wd~AlrLi~q 991 (1987)
+|.++ .+..........+...|.++...|++++|.+.|.++- + +.....++...+++++|.+++++
T Consensus 121 ~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 121 QFEQA------IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHH------HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77433 2211000112345567788888888888888887751 1 22333466677777777777765
Q ss_pred hhh
Q 000162 992 WKQ 994 (1987)
Q Consensus 992 y~~ 994 (1987)
..+
T Consensus 195 ~~~ 197 (234)
T TIGR02521 195 YQQ 197 (234)
T ss_pred HHH
Confidence 544
No 139
>KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair]
Probab=95.82 E-value=0.0038 Score=82.24 Aligned_cols=68 Identities=32% Similarity=0.450 Sum_probs=42.9
Q ss_pred eeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhhhh-hhcccccccCcEEeccccccc
Q 000162 721 VLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNEAK-HNVLCPELKQLYVAITRTRQR 799 (1987)
Q Consensus 721 VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~-~~~L~~ELnLLYVAITRAKk~ 799 (1987)
.-|+|.+||+|||.|-+-|-+-. .. ..+ ++++...... ......|.|.||||+||||++
T Consensus 677 l~Tih~akglefd~v~~~n~~~~--~~---~s~---------------~~~~r~~~~r~~t~~~~e~n~lyV~vtRakkr 736 (853)
T KOG2108|consen 677 LGTIHQAKGLEFDNVHLQNDFVK--VF---GSV---------------SNFERLPSFRVETYNEDEWNFLYVAVTRAKKR 736 (853)
T ss_pred hHHHHhccCcccceeecccCccc--cc---ccc---------------cchhhcchhhhhhhhhhhhhheeeeecchhhh
Confidence 45999999999999988652211 10 000 1111111111 113345789999999999999
Q ss_pred chhcccccc
Q 000162 800 LWIWENMEE 808 (1987)
Q Consensus 800 LvIve~~~~ 808 (1987)
||.+...++
T Consensus 737 l~~~k~~~~ 745 (853)
T KOG2108|consen 737 LIMCKSLHE 745 (853)
T ss_pred ccccccccc
Confidence 999988753
No 140
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.74 E-value=1.6 Score=55.60 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCC-HHH-HHHHHHH
Q 000162 846 KSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGK-ADS-AAKCFYD 923 (1987)
Q Consensus 846 kklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~-~dk-AAk~y~k 923 (1987)
...|...+..|+|+.|.+...++.+..-... ...-+...+ .....+...+...+.+|.+.+-..+- ... +++.+..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~-~~~llaA~a-a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPV-LNLIKAAEA-AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH-HHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3457888888999999999988765211100 000011000 11223444555555565554433331 233 4788888
Q ss_pred hCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 924 LGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.|+|+.|.+.+...-. ...+.-.+..+.+.|+|++|.+++.+.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8999888877665322 345778888889999999888876665
No 141
>PRK12370 invasion protein regulator; Provisional
Probab=95.64 E-value=1.2 Score=59.10 Aligned_cols=186 Identities=12% Similarity=0.051 Sum_probs=97.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC----HHHHHHH
Q 000162 905 ANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF----FSECLAV 975 (1987)
Q Consensus 905 AelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd----~~kAIem 975 (1987)
+.++...|++++|+.+| ++|+++-- .....+...|..+...|++++|.+.|.++ .+ +..+. +
T Consensus 345 g~~~~~~g~~~~A~~~~------~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~-~ 415 (553)
T PRK12370 345 GLINTIHSEYIVGSLLF------KQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-I 415 (553)
T ss_pred HHHHHHccCHHHHHHHH------HHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH-H
Confidence 44444455555555555 44444311 11245777899999999999999999997 22 12222 3
Q ss_pred HHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCC
Q 000162 976 CSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSC 1055 (1987)
Q Consensus 976 y~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~ 1055 (1987)
+...+.+++|...+++.......+.. ......+..|...|++++|...+.......... .. .
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~-------------~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~-~~----~ 477 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNP-------------ILLSMQVMFLSLKGKHELARKLTKEISTQEITG-LI----A 477 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCH-------------HHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh-HH----H
Confidence 45567789998887654432111100 012233567788999999998776532221000 00 0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHH--------HcCCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 000162 1056 FDELLVLEEEAGNFMDAANIAR--------LTGDILLTADLLQKAGNFKEACNLTLNYVLSNSLWSPGSKGWP 1120 (1987)
Q Consensus 1056 ~dEaiell~kaG~f~EA~~iAk--------q~Gd~l~Aae~L~kAg~fdeA~rL~l~~~~~~~LW~~~~~g~p 1120 (1987)
...+...+...| ++|...+. ...+....+..+.-.|+.+.|..+ .+-.--.++|-.-....|
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~d~ 547 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWFKRWKQDP 547 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccchHhhhhhhcCc
Confidence 011112222222 12222111 122333334445555777777776 444455677766665555
No 142
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.62 E-value=0.012 Score=73.30 Aligned_cols=236 Identities=16% Similarity=0.157 Sum_probs=121.8
Q ss_pred CCCcEEEEecCCCCChhhH-hhhccCCCcceEEEEecCCCC------Ccc--cccccccccccCccHHHHHHhCCCCcee
Q 000162 2 EQLKFVVIDEAAQLKESES-AIPLQLPCIQHAILVGDEVQL------PAM--VESSVSGEAYFGRSLFERLSYLGHPKHL 72 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~-LipL~l~~~krlILVGD~kQL------pPi--V~s~~~~~~gl~~SLFeRL~~~g~p~~~ 72 (1987)
+-+|+|+|||+...+..-. |+-+.....+++|.++|..|= +|- ++. ....|-.+--+.| ..-.-+.
T Consensus 294 ~~yD~ilIDE~QDFP~~F~~Lcf~~tkd~KrlvyAyDelQnls~~~m~ppe~iFg--~d~dg~P~V~l~r---adr~DiV 368 (660)
T COG3972 294 KAYDYILIDESQDFPQSFIDLCFMVTKDKKRLVYAYDELQNLSNVKMRPPEEIFG--PDSDGEPRVNLAR---ADRNDIV 368 (660)
T ss_pred ccccEEEecccccCCHHHHHHHHHHhcCcceEEEehHhhhcccccCCCCHHHhcC--cCCCCCccccccc---Cccccch
Confidence 4589999999988763221 222334567999999999993 221 000 0011111111111 1122367
Q ss_pred cccccCCCcccccccccc---ccCCccc--cCcccc-ccccc-----------cccCCCCCCCCeEEEEeCCCcccc--c
Q 000162 73 LSMQYRMHPSISFFPNSY---FYENKIR--DAPTVR-KRSYE-----------KRFLPGPMYGPYSFINVFGGREEF--I 133 (1987)
Q Consensus 73 L~~QYRmhP~Is~f~s~~---FY~g~L~--~~~~v~-~~~~~-----------~~~l~~p~~~pl~fidV~~g~E~~--~ 133 (1987)
|..-||..|..--++-.+ .|.+.++ +.|..- .-.|. -.....|. ..-.|++.....+.. -
T Consensus 369 L~kCYRnsp~nLvaAHaLGfG~ysnlVqlfd~p~lW~diGY~vk~g~l~vG~~V~L~Rdpe-ssp~fl~e~~~p~~i~~f 447 (660)
T COG3972 369 LKKCYRNSPKNLVAAHALGFGLYSNLVQLFDKPPLWDDIGYKVKKGDLQVGDRVHLSRDPE-SSPEFLPENHKPTAIHLF 447 (660)
T ss_pred HHHHhcCCchhhhHHhhccchhhhHHHHHhcCchhhhhcCceeecccccCCCceeeccCcc-cCcccccccCChhhhhee
Confidence 899999877653333221 1222111 111100 00000 00011111 112233221111111 0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhhcccCCccEEEEccCHHH----HHHHHHHhhhhh-h--------------cccCcc
Q 000162 134 EHSCRNMVEVSVVMKILRNLYKAWVESKEKLSIGIVSPYSAQ----VIAIQEKLGSKY-E--------------KIAGFA 194 (1987)
Q Consensus 134 ~~S~~N~~Ea~~V~~lV~~L~~~~~~~~~~~sIgIITPY~aQ----v~~Ir~~L~~~~-~--------------~~~~~~ 194 (1987)
-.+-.-..|+.+++.-+....+. .....+|.||.+-... ...+.+.|..+- . ..+ ..
T Consensus 448 i~fd~~~deivwi~~qI~~~~ed---eLe~dDIiVi~lDp~t~Rgy~~~li~sL~s~giq~hl~gvd~s~e~~f~~d-gk 523 (660)
T COG3972 448 IGFDNGPDEIVWIIIQIKEFRED---ELEQDDIIVIFLDPGTMRGYIYELIHSLKSKGIQQHLWGVDISHETKFKQD-GK 523 (660)
T ss_pred eccCCcchhhHHHHHHHHHhccc---ccccCCEEEEecCCccccchHHHHHHHHHHhhhhhhccccCcccccccccC-ce
Confidence 01112356777776666653332 2456789999875432 222223332210 0 011 26
Q ss_pred EEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEecccccccEEEEcch
Q 000162 195 VKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRARHCLWILGSE 250 (1987)
Q Consensus 195 V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVALTRAK~~LiIVGn~ 250 (1987)
|.+.+|-+..|.|+.+|+.--+..-. .|....+|.+.+|+||.|.=+-|+|-.
T Consensus 524 vtis~IyrAKGnEapfV~aL~a~~ls---~~la~~RN~LfTamTRSkawvrv~glg 576 (660)
T COG3972 524 VTISRIYRAKGNEAPFVYALGAAYLS---TGLADWRNILFTAMTRSKAWVRVVGLG 576 (660)
T ss_pred EEeeeehhccCCCCcEEEEehhhhhC---ccchhHHhHHHHHHhhhhhhhhhhccC
Confidence 89999999999999999977654432 466677889999999999988888843
No 143
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=0.078 Score=68.65 Aligned_cols=230 Identities=13% Similarity=0.094 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccc--hhH---------HHH--HhhhHHhhhhhhcCChHHHHHHHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTY--WEG---------RSK--ATGLKAASDHIRSSNPLEANVILREAANI 907 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~--la~---------la~--A~~l~~aA~~l~s~~~~ea~~~y~eAAel 907 (1987)
+.--.-++|..+|..++|++|.++|..+.+.+ ... |-. ...+-..|..+...++. .-.-+=-+++.
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~-sPesWca~GNc 430 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPN-SPESWCALGNC 430 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCC-CcHHHHHhcch
Confidence 44333788999999999999999999988731 110 000 00111112222222211 01224456777
Q ss_pred HHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCHHH---HHHHHHhc
Q 000162 908 FEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFFSE---CLAVCSRG 979 (1987)
Q Consensus 908 Ye~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~~k---AIemy~ka 979 (1987)
|---++.+.|++||.++-+.+.--. =.|.-+|.-+.....|++|...|.+| .+|.. +=-+|.|.
T Consensus 431 fSLQkdh~~Aik~f~RAiQldp~fa--------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLDPRFA--------YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccCCccc--------hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc
Confidence 7777788889998844433222111 11444556666667777777777766 22221 11245566
Q ss_pred CChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHH---HHHHHhhcCCH
Q 000162 980 ELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDL---MRNFLKSKSCF 1056 (1987)
Q Consensus 980 k~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~---aa~fL~k~~~~ 1056 (1987)
++++.|.-..++-.+-...+ + -.+-.+...+.+.|..+.|.+++...--.|. ..+|
T Consensus 503 ek~e~Ae~~fqkA~~INP~n------s--------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~------- 561 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVEINPSN------S--------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY------- 561 (638)
T ss_pred chhhHHHHHHHhhhcCCccc------h--------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH-------
Confidence 66665554442211110000 0 0123445677788888888877664222221 1111
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHcC--------CHHHHHHHHHHcCCHHHHHHH
Q 000162 1057 DELLVLEEEAGNFMDAANIARLTG--------DILLTADLLQKAGNFKEACNL 1101 (1987)
Q Consensus 1057 dEaiell~kaG~f~EA~~iAkq~G--------d~l~Aae~L~kAg~fdeA~rL 1101 (1987)
.-+.++...++++||+..+++-. .+..-++.+.+-|+.+.|...
T Consensus 562 -~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 562 -HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred -HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 12345556677777766665531 112224555555666665554
No 144
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.58 E-value=2.3 Score=55.51 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhc-----CCHHHH-------HHHHHhcCChHHHHHHHHH
Q 000162 941 PELEKAGECFFLAGQYKHAAEVYARG-----NFFSEC-------LAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 941 ~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~~kA-------Iemy~kak~wd~AlrLi~q 991 (1987)
.++-..|+.|+..|+.+.|-.+++++ +-.+.. ++|=.++++++.|+++++.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 56889999999999999999999998 333333 3444578899999999875
No 145
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=3.4 Score=52.63 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=43.9
Q ss_pred HHhCCHHHHHHHHHHc--------CCHHHHHHHHHHcCCHHHHHHHHHHHH-----------------HHhhhcCCCCCC
Q 000162 1064 EEAGNFMDAANIARLT--------GDILLTADLLQKAGNFKEACNLTLNYV-----------------LSNSLWSPGSKG 1118 (1987)
Q Consensus 1064 ~kaG~f~EA~~iAkq~--------Gd~l~Aae~L~kAg~fdeA~rL~l~~~-----------------~~~~LW~~~~~g 1118 (1987)
-+.+++.++.+.+.+. ..+...|+.|.+.++|++|.+-+-+-+ .=+.|-.+
T Consensus 439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---- 514 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---- 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc----
Confidence 3556677766666554 244556888888888888877543321 11122222
Q ss_pred CCchhhhhHHHHHHHHHHH
Q 000162 1119 WPLKQFTEKKELFEKAKSL 1137 (1987)
Q Consensus 1119 ~p~k~f~~k~~ll~~a~~~ 1137 (1987)
|...|-+-++||+||++.
T Consensus 515 -wk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 515 -WKEDINQAENLLRKAIEL 532 (606)
T ss_pred -hhhhHHHHHHHHHHHHcc
Confidence 448899999999999864
No 146
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.51 Score=63.57 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=107.7
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccc------hhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcC
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTY------WEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIG 912 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~------la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G 912 (1987)
.++|+.|--+|...++...|.-|.+-|+..-.-. +..++... .+-++..-.+.+++.++.++++|..+|.++=
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN-~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN-VYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH-HHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999888754411 22233222 3334444456677778889999999998654
Q ss_pred CHH----HH----HHHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc----------CCH
Q 000162 913 KAD----SA----AKCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG----------NFF 969 (1987)
Q Consensus 913 ~~d----kA----Ak~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa----------Gd~ 969 (1987)
+.+ -| .-++...|+|..|.+++.+.-. ...+...|.||...|+|..|+++|+.+ +..
T Consensus 640 ~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 640 RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 333 22 4567788999999999876311 355888999999999999999999987 111
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 000162 970 SECLAVCSRGELFDIGLQYIN 990 (1987)
Q Consensus 970 ~kAIemy~kak~wd~AlrLi~ 990 (1987)
.-..+++.+.+.|.++.+.+.
T Consensus 720 ~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 334456667777777776554
No 147
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.30 E-value=3.6 Score=50.21 Aligned_cols=176 Identities=15% Similarity=0.142 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcc-cch--hHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCC---H-H
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKD-TYW--EGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGK---A-D 915 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd-~~l--a~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~---~-d 915 (1987)
+.=..+|.-+-..|..+.|++.-.-.-+ +.+ .....| +.+-+. ..++.+.++.|.++|...-+ + .
T Consensus 70 e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lA--l~qL~~------Dym~aGl~DRAE~~f~~L~de~efa~ 141 (389)
T COG2956 70 EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA--LQQLGR------DYMAAGLLDRAEDIFNQLVDEGEFAE 141 (389)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHH------HHHHhhhhhHHHHHHHHHhcchhhhH
Confidence 3335677777777899998887664322 211 111111 111111 13556778888888886422 2 2
Q ss_pred HH----HHHHHHhCCHHHHHHHHHHh---cChhH-------HHHHHHHHHHcCCHHHHHHHHHhcCCH-HHHH-------
Q 000162 916 SA----AKCFYDLGEYERAGKIYEER---CGKPE-------LEKAGECFFLAGQYKHAAEVYARGNFF-SECL------- 973 (1987)
Q Consensus 916 kA----Ak~y~kaGdyekA~eLy~e~---~~~~l-------l~~aAe~fE~agqy~kAAeLYeKaGd~-~kAI------- 973 (1987)
.| +..|...++|+||++.+++. .++.. +-+.|..+....++++|.++..|+=.- .+|+
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 22 67888899999999887752 33333 344455555556777777776665111 1111
Q ss_pred HHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 974 AVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 974 emy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
.++...|+|++|++..+...++.. .. ..+-++.-..+|.++|++.+...+++.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~---~y----------l~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNP---EY----------LSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhCh---HH----------HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 133445566666666654444311 11 111234556788889998888777763
No 148
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.26 E-value=1.8 Score=50.18 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
...++.+..+|..++..|+|+.|...|.++-...- .++. ....+..-+..|.+.|++++|+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p------------------~~~~-~~~a~~~la~~~~~~~~~~~A~ 90 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP------------------FSPY-AEQAQLDLAYAYYKSGDYAEAI 90 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------Cchh-HHHHHHHHHHHHHhcCCHHHHH
Confidence 44677899999999999999999999986422100 0011 1122445567777788888888
Q ss_pred HHH
Q 000162 919 KCF 921 (1987)
Q Consensus 919 k~y 921 (1987)
..|
T Consensus 91 ~~~ 93 (235)
T TIGR03302 91 AAA 93 (235)
T ss_pred HHH
Confidence 888
No 149
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.22 E-value=2 Score=60.47 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=113.4
Q ss_pred CHHHHHHH--HHHHHHhcCHHHHHHHHHHhcccc--hhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHH
Q 000162 841 SPEEWKSR--GIKLFYENNYEMATICFEKAKDTY--WEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADS 916 (1987)
Q Consensus 841 tpeeWkkl--A~~l~~~g~ye~A~k~F~rAgd~~--la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dk 916 (1987)
.|+.|..+ |..+...|+++.|..+|.++.... ...+.. . ........+..++...|.+|.+.- -.....
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~---l--a~all~~Gd~~eA~~~l~qAL~l~--P~~~~l 578 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLA---A--ANTAQAAGNGAARDRWLQQAEQRG--LGDNAL 578 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHH---H--HHHHHHCCCHHHHHHHHHHHHhcC--CccHHH
Confidence 45556554 555568899999999999865421 111100 0 000112223333444444443321 111122
Q ss_pred HHHHHHHh---CCHHHHHHHHHHhc----ChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHHHHHHHhcCC
Q 000162 917 AAKCFYDL---GEYERAGKIYEERC----GKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SECLAVCSRGEL 981 (1987)
Q Consensus 917 AAk~y~ka---GdyekA~eLy~e~~----~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kAIemy~kak~ 981 (1987)
...+.... |++++|...|.+.. +...+...|..+.+.|++++|.+.|.++ ++. .....++.+.++
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 22222233 66666666665422 2456778999999999999999999987 222 112235667788
Q ss_pred hHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHH
Q 000162 982 FDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLV 1061 (1987)
Q Consensus 982 wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaie 1061 (1987)
+++|+...++..+....+ .......+..|...|++++|...++..-..+ . ....-.+...+
T Consensus 659 ~eeAi~~l~~AL~l~P~~--------------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P---~~a~i~~~~g~ 719 (987)
T PRK09782 659 IAQSREMLERAHKGLPDD--------------PALIRQLAYVNQRLDDMAATQHYARLVIDDI--D---NQALITPLTPE 719 (987)
T ss_pred HHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C---CCchhhhhhhH
Confidence 888888776543322211 0122344678889999999988766421111 0 00111233445
Q ss_pred HHHHhCCHHHHHHHHHH
Q 000162 1062 LEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1062 ll~kaG~f~EA~~iAkq 1078 (1987)
++....+|..|.+.+..
T Consensus 720 ~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 720 QNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666554444
No 150
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.20 E-value=0.0071 Score=75.57 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=46.1
Q ss_pred CCCcEEEEecCCCCChhhHhhhc----c----------CCCcceEEEEecCCCCCcccccccccccc---c-CccHHHHH
Q 000162 2 EQLKFVVIDEAAQLKESESAIPL----Q----------LPCIQHAILVGDEVQLPAMVESSVSGEAY---F-GRSLFERL 63 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL----~----------l~~~krlILVGD~kQLpPiV~s~~~~~~g---l-~~SLFeRL 63 (1987)
...+++||||+||+....+ ..+ . .++..++|++||..|||||+......... + ...++..
T Consensus 101 ~~~~~lIiDEism~~~~~l-~~i~~~lr~i~~~~~~~~pFGG~~vil~GDf~QlpPV~~~~~~~~~~~~~~~~s~lw~~- 178 (364)
T PF05970_consen 101 RKADVLIIDEISMVSADML-DAIDRRLRDIRKSKDSDKPFGGKQVILFGDFLQLPPVVPRGEREEIFNASIFSSPLWNQ- 178 (364)
T ss_pred hhheeeecccccchhHHHH-HHHHHhhhhhhcccchhhhcCcceEEeehhhhhcCCCcccccccceehhhccccccccc-
Confidence 4568999999999985443 222 0 13457899999999999998553222110 1 1122222
Q ss_pred HhCCCCceecccccCCCc
Q 000162 64 SYLGHPKHLLSMQYRMHP 81 (1987)
Q Consensus 64 ~~~g~p~~~L~~QYRmhP 81 (1987)
+..+.|++++|..-
T Consensus 179 ----~~~~~L~~~~R~~~ 192 (364)
T PF05970_consen 179 ----FKIFELTKNMRQSD 192 (364)
T ss_pred ----hhhhhhhhceeecc
Confidence 33567888888644
No 151
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.35 Score=60.60 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccc---chhHHH-------------HHhhhHHhhhhhhcCChHHHHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDT---YWEGRS-------------KATGLKAASDHIRSSNPLEANVILREAA 905 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~---~la~la-------------~A~~l~~aA~~l~s~~~~ea~~~y~eAA 905 (1987)
|+-.=-.|.+.--.++.+.|.+.|.||=.. ....+. .|..-.+.|.. -+|..+. .+.-.+
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyR-AWYGLG 405 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYR-AWYGLG 405 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHH-HHhhhh
Confidence 333334578888889999999999997431 111111 11111122211 2343333 355667
Q ss_pred HHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc---CCH-----HHHHHHHH
Q 000162 906 NIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG---NFF-----SECLAVCS 977 (1987)
Q Consensus 906 elYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa---Gd~-----~kAIemy~ 977 (1987)
..|+-.+..--|.-+| ++|.++- -.+..++...|+||++.++.++|..+|.++ ||. -+...+|.
T Consensus 406 QaYeim~Mh~YaLyYf------qkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYF------QKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHHhcchHHHHHHH------HHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 7777777777777776 5555441 123466889999999999999999999987 554 22333444
Q ss_pred hcCChHHHHHHHHHh
Q 000162 978 RGELFDIGLQYINYW 992 (1987)
Q Consensus 978 kak~wd~AlrLi~qy 992 (1987)
+.++.++|.+.-+++
T Consensus 478 ~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHhHHHHHHHHHHH
Confidence 444444444444333
No 152
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.07 E-value=0.59 Score=61.21 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=65.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHH
Q 000162 1021 ALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLTGDILLTADLLQKAGNFKEACN 1100 (1987)
Q Consensus 1021 A~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~kAg~fdeA~r 1100 (1987)
|+.|.+.||+++|.+.+...+..|.+.+|+.. .++..+.++|+.++|.+++..--+-.. ....+.-+.+=
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNs-----K~aKy~LRa~~~e~A~~~~~~Ftr~~~-----~~~~~L~~mQc 304 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLADRYINS-----KCAKYLLRAGRIEEAEKTASLFTREDV-----DPLSNLNDMQC 304 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChhhHHHHH-----HHHHHHHHCCCHHHHHHHHHhhcCCCC-----CcccCHHHHHH
Confidence 67788899999998888888888877777763 688888888888888777654211000 01123333333
Q ss_pred HHHHHHHHhhhcCCCCCCCCchhhhhHHH
Q 000162 1101 LTLNYVLSNSLWSPGSKGWPLKQFTEKKE 1129 (1987)
Q Consensus 1101 L~l~~~~~~~LW~~~~~g~p~k~f~~k~~ 1129 (1987)
.-..--.+++...+|.+|.++|+|..=.+
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32333556777778889999888765433
No 153
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.02 E-value=1.5 Score=54.44 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=37.4
Q ss_pred HHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhcCC--------HHHHHHHHHhcCChHHHHHH
Q 000162 922 YDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARGNF--------FSECLAVCSRGELFDIGLQY 988 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKaGd--------~~kAIemy~kak~wd~AlrL 988 (1987)
...|..++|.+.+.++.+ .+.+.++|..||...+...|+++|.++.- +.+..++|.+.++-..|++.
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 344555666655544222 34566666666666666666666666632 24555566655555555543
No 154
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=94.93 E-value=0.087 Score=70.88 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=99.6
Q ss_pred CCCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC--CCCceecccccC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL--GHPKHLLSMQYR 78 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~--g~p~~~L~~QYR 78 (1987)
.+|++|+|||.......+.-+.-.+ .....+.+|||+.| .|+ ...|.....+..+... ..+.+.|..+||
T Consensus 212 ~rf~~iLvDE~QDtn~~Q~~ll~~la~~~~~l~~VGD~dQ--sIY-----~frGA~~~ni~~f~~df~~~~~i~Le~NyR 284 (655)
T COG0210 212 ARFRYILVDEFQDTNPLQYELLKLLAGNAANLFVVGDDDQ--SIY-----GFRGADPENILDFEKDFPAAKVIKLEQNYR 284 (655)
T ss_pred hhCCEEEEeCcCCCCHHHHHHHHHHhCCCCCEEEEcCCcc--ccc-----eeCCCChHHHHHHHhhCCCCcEEEecCCCC
Confidence 4799999999988876554322222 22468889999999 221 2344444554444432 246899999999
Q ss_pred CCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhh
Q 000162 79 MHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWV 158 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~ 158 (1987)
+.|.|....|...=.+. ........... ..+ ...+.++. ......|+..+...+..+...+.
T Consensus 285 St~~Il~~An~~i~~n~-----~r~~k~l~~~~-~~~-~~~~~~~~-----------~~~~~~ea~~i~~~I~~l~~~~~ 346 (655)
T COG0210 285 STPNILAAANKVIANNK-----KRQAKTLRTEV-EGS-GEKVVLLL-----------ANDEEDEARWIASEIDALIEIGK 346 (655)
T ss_pred CcHHHHHHHHHHHhcCC-----ccCCCcceecc-CCC-CCCceEEe-----------CCChHHHHHHHHHHHHHHHHcCC
Confidence 99999999886543111 11110000000 011 11222222 23356799999999998877653
Q ss_pred cccCCccEEEEccCHHHHHHHHHHhhh
Q 000162 159 ESKEKLSIGIVSPYSAQVIAIQEKLGS 185 (1987)
Q Consensus 159 ~~~~~~sIgIITPY~aQv~~Ir~~L~~ 185 (1987)
....+++|+.-.+.|...+...+..
T Consensus 347 --~~~~d~aiL~R~n~~s~~~e~~l~~ 371 (655)
T COG0210 347 --VNYSDIAILYRTNAQSRLIEEALRA 371 (655)
T ss_pred --CChhhEEEEEecCcchHHHHHHHHH
Confidence 4667999999999999999998864
No 155
>PRK11189 lipoprotein NlpI; Provisional
Probab=94.87 E-value=1.7 Score=52.90 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
+.-|..+|..+...|+++.|...|.++-.. +|.. ...+...+..|...|+++.|+++|
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---------------------~P~~-~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL---------------------RPDM-ADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------------------CCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455899999999999999999998876331 0111 123566778889999999999888
Q ss_pred HHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCHHHHHH--HHHhcCChHHHHHHHH
Q 000162 922 YDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFFSECLA--VCSRGELFDIGLQYIN 990 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~~kAIe--my~kak~wd~AlrLi~ 990 (1987)
++|+++--+ ....+...|..+...|+|++|.+.|.++ ++...++- ++...+++++|.+...
T Consensus 122 ------~~Al~l~P~--~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 122 ------DSVLELDPT--YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred ------HHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 677666211 1345677888888899999999888776 23222221 2233445666666653
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.87 E-value=1.2 Score=54.96 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=51.3
Q ss_pred HHHhcCCHHHHHHHHHHhccHHHHHHH-----HhhcCCHHHHH----------------HHHHHhCCHHHHHHHHHHcCC
Q 000162 1023 HYYQLNDKKSMMKFVKAFHSMDLMRNF-----LKSKSCFDELL----------------VLEEEAGNFMDAANIARLTGD 1081 (1987)
Q Consensus 1023 ~ylklgD~~~Am~~vk~~~s~d~aa~f-----L~k~~~~dEai----------------ell~kaG~f~EA~~iAkq~Gd 1081 (1987)
.++..|+.+.|.++.+.|.-.|...-| |.+.++++++- +.+.+.|+..+|........+
T Consensus 186 ~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~ 265 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD 265 (319)
T ss_pred HHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh
Confidence 345566666666666665555542222 22344444443 445567777777776666556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1082 ILLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1082 ~l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
...+++|.+.|+|.+|...+.+.
T Consensus 266 -~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 266 -EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHc
Confidence 66688888888888888887766
No 157
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.51 E-value=1.3 Score=47.48 Aligned_cols=120 Identities=13% Similarity=0.201 Sum_probs=80.6
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-Hhc--cHH
Q 000162 968 FFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVK-AFH--SMD 1044 (1987)
Q Consensus 968 d~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk-~~~--s~d 1044 (1987)
+.++.+..+.+.+....++.+++..-.....+.. ....+++ .|.+. +....+++++ ..+ ..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~----------~~~~li~----ly~~~-~~~~ll~~l~~~~~~yd~~ 73 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPA----------LQTKLIE----LYAKY-DPQKEIERLDNKSNHYDIE 73 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchh----------HHHHHHH----HHHHH-CHHHHHHHHHhccccCCHH
Confidence 3456666666666777777777654433211111 1111222 23333 4567777777 333 345
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc-CCHHHHHHHHHHcCCHHHHHHHH
Q 000162 1045 LMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT-GDILLTADLLQKAGNFKEACNLT 1102 (1987)
Q Consensus 1045 ~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~-Gd~l~Aae~L~kAg~fdeA~rL~ 1102 (1987)
.+.+.+.+.+.+++++-++.+.|++.+|..++.++ +++..|.+...+.++.+-..+++
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~ 132 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVL 132 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHH
Confidence 58889999999999999999999999999999998 88888888888877766555543
No 158
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.51 E-value=0.28 Score=53.49 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
...|+.|...|..+...|+|+.|..+|.++=.. +|.. ...+..-|..+...|++++|+
T Consensus 21 ~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~P~~-~~a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 21 SVDPETVYASGYASWQEGDYSRAVIDFSWLVMA---------------------QPWS-WRAHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------CCCc-HHHHHHHHHHHHHHhhHHHHH
Confidence 446777889999999999999999999974221 1111 123556777888899999999
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.+| ++|+++- -.....+...|.++...|++++|.+.|.++
T Consensus 79 ~~y------~~Al~l~--p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 79 NFY------GHALMLD--ASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHH------HHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999 6666651 122455778888888888888888888665
No 159
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=94.44 E-value=0.043 Score=60.30 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=31.7
Q ss_pred cCcccCHHHHHhhcc---C-CcEEEEcCCCCChhHHHHHHHH
Q 000162 510 LPFEVTDEQLEMILF---P-RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 510 ~~I~l~~eQk~AI~~---~-~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+.++++.|++++.. . +.++|+|++|||||++++.-++
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~ 46 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPAL 46 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHH
Confidence 356789999999998 4 7999999999999998744444
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.39 E-value=0.024 Score=58.37 Aligned_cols=17 Identities=41% Similarity=0.730 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|+|||||||++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 57899999999999997
No 161
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.26 E-value=0.032 Score=62.54 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=17.6
Q ss_pred EEEEcCCCCChhHHH--HHHHHhh
Q 000162 528 TFILGRSGTGKTTIL--TMKLFQN 549 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI--Iikl~~~ 549 (1987)
++|||.||+||||++ +++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999998 6666643
No 162
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.25 E-value=0.041 Score=57.40 Aligned_cols=18 Identities=44% Similarity=0.857 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|+|||||||++
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999987
No 163
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.05 E-value=6.7 Score=51.63 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
.++-=|--+|...-..++|++|+|||+.|=.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 3666799999999999999999999999743
No 164
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.98 E-value=0.04 Score=57.37 Aligned_cols=15 Identities=53% Similarity=0.587 Sum_probs=14.0
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|.|||||||++
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 579999999999997
No 165
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.93 E-value=0.039 Score=57.63 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhHHH--HHHHH
Q 000162 528 TFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++|+|+|||||||++ +.+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 589999999999998 44444
No 166
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.90 E-value=0.91 Score=59.52 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCH--------HH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFF--------SE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~--------~k 971 (1987)
.+.-.|.||...|++++|.++. ++|++.-.. ..+++.--|+.+..+|++.+|++.+..|... .+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~I------d~aI~htPt--~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYI------DKAIEHTPT--LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH------HHHHhcCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4566777888888888887776 666654111 1356778899999999999999999998544 78
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHH----hccHHH-
Q 000162 972 CLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQ-DFLQSCALHYYQLNDKKSMMKFVKA----FHSMDL- 1045 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~-~~le~cA~~ylklgD~~~Am~~vk~----~~s~d~- 1045 (1987)
|+..+.+++..++|.+++..+..... +.. ..+..+.- -|.-.||..|.+.|++-.|.+.+.. |..|.+
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~---~~~---~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDV---DPL---SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED 341 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCC---Ccc---cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988766542 121 22333333 3778999999999999888776553 333332
Q ss_pred H---HHHHhhcCCHHHHHHHHH
Q 000162 1046 M---RNFLKSKSCFDELLVLEE 1064 (1987)
Q Consensus 1046 a---a~fL~k~~~~dEaiell~ 1064 (1987)
. ..|+.+.+-+...++++.
T Consensus 342 QfDFH~Yc~RK~t~r~Y~~~L~ 363 (517)
T PF12569_consen 342 QFDFHSYCLRKMTLRAYVDMLR 363 (517)
T ss_pred cccHHHHHHhhccHHHHHHHHH
Confidence 2 233555555555555553
No 167
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.73 E-value=1.3 Score=60.99 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=68.7
Q ss_pred HHHHHHhCCHHHHHHHHHHhc-----ChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHh
Q 000162 918 AKCFYDLGEYERAGKIYEERC-----GKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 918 Ak~y~kaGdyekA~eLy~e~~-----~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy 992 (1987)
|.||.++|++++|..+|++.- +...++..|.+|.+. +.++|.++|.+ |+..++.-+++..+.++-+.+
T Consensus 123 A~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K------AV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 123 AEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK------AIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH------HHHHHHhhhcchHHHHHHHHH
Confidence 667777777777777766521 145689999999999 99999998764 677788777888777766655
Q ss_pred hhcccccchh-------hhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 993 KQHVDTDVGL-------VRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 993 ~~~~e~e~~~-------~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
-.....+... +..+.. .....+++...-.+|-+.+||..++.+++.
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4432221111 000000 011112233334566666667777666664
No 168
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=1.5 Score=59.09 Aligned_cols=68 Identities=26% Similarity=0.316 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHh--cChhHHHHHHHHHHHcCCHHHHHHHHHhc-CCHHHHHHHHHhcCChH
Q 000162 916 SAAKCFYDLGEYERAGKIYEER--CGKPELEKAGECFFLAGQYKHAAEVYARG-NFFSECLAVCSRGELFD 983 (1987)
Q Consensus 916 kAAk~y~kaGdyekA~eLy~e~--~~~~ll~~aAe~fE~agqy~kAAeLYeKa-Gd~~kAIemy~kak~wd 983 (1987)
.+=+.|.+.|+|++|.+++... +-+..+.+.|+++-+.+.|..||++|++. .-|++-+-=+...++.+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHhcCCHH
Confidence 3344455555555555553321 11356889999999999999999999997 44455444455555555
No 169
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.61 E-value=0.049 Score=56.63 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.|||||||++
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3689999999999996
No 170
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.58 E-value=2.4 Score=58.58 Aligned_cols=248 Identities=7% Similarity=0.006 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
..|..=+.+|...+++|+|+.|...|.++-...-..... .+ ..+.+|...|+.++|..
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~a---------------------v~-dll~l~~~~G~~~~A~~ 89 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQ---------------------VD-DWLQIAGWAGRDQEVID 89 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhh---------------------HH-HHHHHHHHcCCcHHHHH
Confidence 477778899999999999999999999764311100000 00 22222333344444444
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HHHHHHHHHhcCChHHHHHHHHH
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF---FSECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~kAIemy~kak~wd~AlrLi~q 991 (1987)
.+.++-+... .....+.-.|..+...|+|.+|+++|.++ ++ +...+.+|.+.++.++|++.+++
T Consensus 90 ~~eka~~p~n--------~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 90 VYERYQSSMN--------ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred HHHHhccCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 4322221000 00011222344555555555555555554 11 11123345556666666666655
Q ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhh----cCCHHHHHHHHHHhC
Q 000162 992 WKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKS----KSCFDELLVLEEEAG 1067 (1987)
Q Consensus 992 y~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k----~~~~dEaiell~kaG 1067 (1987)
..+..... . .+ .. . +..+...++...|++.++. .+.. .+.+-+....+.+.|
T Consensus 162 l~~~dp~~-~-------~~-l~-----l-ayL~~~~~~~~~AL~~~ek---------ll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 162 LAERDPTV-Q-------NY-MT-----L-SYLNRATDRNYDALQASSE---------AVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred hcccCcch-H-------HH-HH-----H-HHHHHhcchHHHHHHHHHH---------HHHhCCCCHHHHHHHHHHHHHcC
Confidence 44432210 0 00 10 0 1111122333224433331 1111 112344556677888
Q ss_pred CHHHHHHHHHHcCCHHHH-----------HHHHH--------HcCCHHHHHHHHHHHHHHhhhcCCCCCCCCc-hhhh-h
Q 000162 1068 NFMDAANIARLTGDILLT-----------ADLLQ--------KAGNFKEACNLTLNYVLSNSLWSPGSKGWPL-KQFT-E 1126 (1987)
Q Consensus 1068 ~f~EA~~iAkq~Gd~l~A-----------ae~L~--------kAg~fdeA~rL~l~~~~~~~LW~~~~~g~p~-k~f~-~ 1126 (1987)
-..-|.++++++.++... ++... ..++|..+-+.+..+--.-..|....-.-|. .++. -
T Consensus 218 ~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D 297 (822)
T PRK14574 218 IVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARID 297 (822)
T ss_pred CcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence 888888888888744433 33321 2356777777777777777777753332222 2211 2
Q ss_pred HHHHHHHHHHHhhhc
Q 000162 1127 KKELFEKAKSLAKSN 1141 (1987)
Q Consensus 1127 k~~ll~~a~~~a~~~ 1141 (1987)
-..+|.+...|+.-.
T Consensus 298 rl~aL~~r~r~~~vi 312 (822)
T PRK14574 298 RLGALLVRHQTADLI 312 (822)
T ss_pred HHHHHHHhhhHHHHH
Confidence 234455555554433
No 171
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.57 E-value=0.033 Score=61.48 Aligned_cols=15 Identities=47% Similarity=0.700 Sum_probs=12.1
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|||+|||||||++
T Consensus 2 I~i~G~~stGKTTL~ 16 (163)
T PF13521_consen 2 IVITGGPSTGKTTLI 16 (163)
T ss_dssp EEEE--TTSHHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999997
No 172
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.47 E-value=0.05 Score=64.90 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++++|+|||||||++
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 457899999999999998
No 173
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.05 Score=60.73 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.4
Q ss_pred cEEEEcCCCCChhHHH-HHH
Q 000162 527 STFILGRSGTGKTTIL-TMK 545 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI-Iik 545 (1987)
.+.|||-|||||||+. .++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 4789999999999997 555
No 174
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=93.38 E-value=0.075 Score=58.10 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=27.7
Q ss_pred CHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 515 TDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 515 ~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
||.|.+++.. ...++|.|++|+|||++.++-++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHH
Confidence 6889999887 67899999999999999965555
No 175
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.31 E-value=7 Score=47.75 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc----CCHHHH--
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----NFFSEC-- 972 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----Gd~~kA-- 972 (1987)
..|..-+.+|.+.|++++|...| ++|+++.- .....+...|..+...|+|++|.+.|.++ -++..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~------~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~ 136 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDF------SQALALRP--DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYL 136 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------HHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44667788899999999999877 66666521 12356888999999999999999999998 122222
Q ss_pred --HHHHHhcCChHHHHHHHHHhhhc
Q 000162 973 --LAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 973 --Iemy~kak~wd~AlrLi~qy~~~ 995 (1987)
..++...+.+++|++.+++..+.
T Consensus 137 ~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 137 NRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23566789999999988766554
No 176
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.30 E-value=7.2 Score=45.93 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 000162 846 KSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLG 925 (1987)
Q Consensus 846 kklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaG 925 (1987)
-.+|..++.+|++..|.+-+++|=.. +|... ..+.--|.+|.+.|..+.|-+.|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~---------------------DPs~~-~a~~~~A~~Yq~~Ge~~~A~e~Y---- 92 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH---------------------DPSYY-LAHLVRAHYYQKLGENDLADESY---- 92 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---------------------CcccH-HHHHHHHHHHHHcCChhhHHHHH----
Confidence 46778888888888888777754221 11111 12344567889999999999998
Q ss_pred CHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc----------CCHHHHHHHHHhcCChHHHHHHHHHhh
Q 000162 926 EYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----------NFFSECLAVCSRGELFDIGLQYINYWK 993 (1987)
Q Consensus 926 dyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----------Gd~~kAIemy~kak~wd~AlrLi~qy~ 993 (1987)
++|+.+-.+ .-.+++..|.++...|.|++|-+.|.++ +-++.+--+..++|+++.|..+.++-.
T Consensus 93 --rkAlsl~p~--~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 93 --RKALSLAPN--NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred --HHHHhcCCC--ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 777777322 1256889999999999999999988887 344555556678888888888876533
No 177
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.10 E-value=20 Score=49.39 Aligned_cols=135 Identities=14% Similarity=0.159 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH-----hccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc-----CCHHHH-
Q 000162 1017 LQSCALHYYQLNDKKSMMKFVKA-----FHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT-----GDILLT- 1085 (1987)
Q Consensus 1017 le~cA~~ylklgD~~~Am~~vk~-----~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~-----Gd~l~A- 1085 (1987)
+...|.||.-.||++.+..+.-. ......+..|+. ..+.+-..|+|++|+..+.+. +.++..
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~-------~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQ-------LGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 45667788888998877665442 111122333333 456667889999999888875 222333
Q ss_pred ---HHHHHHcCCHHHHHHHHHHH-----------HHHhhhcCCCCCCCCchhhhhHHHHHHHHHHHhhhccccchhhhhh
Q 000162 1086 ---ADLLQKAGNFKEACNLTLNY-----------VLSNSLWSPGSKGWPLKQFTEKKELFEKAKSLAKSNSNQFYEFVCT 1151 (1987)
Q Consensus 1086 ---ae~L~kAg~fdeA~rL~l~~-----------~~~~~LW~~~~~g~p~k~f~~k~~ll~~a~~~a~~~~~~~~~~~~~ 1151 (1987)
++++...|++++|...+-+. ++.-+|.+... --|.+. =.-.++|+|+..-.-..+.++-.. .
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-~~~~~~-d~a~~~l~K~~~~~~~d~~a~l~l--a 421 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA-KKQEKR-DKASNVLGKVLEQTPVDSEAWLEL--A 421 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh-hhhHHH-HHHHHHHHHHHhcccccHHHHHHH--H
Confidence 88899999999888765443 44455555443 011111 112345566655554444444222 2
Q ss_pred hhcccccCcch
Q 000162 1152 EASILSNDESD 1162 (1987)
Q Consensus 1152 ~~~~l~~~~~~ 1162 (1987)
++-...|-..+
T Consensus 422 ql~e~~d~~~s 432 (1018)
T KOG2002|consen 422 QLLEQTDPWAS 432 (1018)
T ss_pred HHHHhcChHHH
Confidence 33334454544
No 178
>COG3911 Predicted ATPase [General function prediction only]
Probab=93.08 E-value=0.05 Score=59.03 Aligned_cols=17 Identities=41% Similarity=0.737 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+..|||||||.||||.+
T Consensus 10 ~~fIltGgpGaGKTtLL 26 (183)
T COG3911 10 KRFILTGGPGAGKTTLL 26 (183)
T ss_pred eEEEEeCCCCCcHHHHH
Confidence 48999999999999995
No 179
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.86 E-value=11 Score=47.24 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH--hccHHH--------------------HHHHHhhcCC----HHHHHHHHHHhCCHHH
Q 000162 1018 QSCALHYYQLNDKKSMMKFVKA--FHSMDL--------------------MRNFLKSKSC----FDELLVLEEEAGNFMD 1071 (1987)
Q Consensus 1018 e~cA~~ylklgD~~~Am~~vk~--~~s~d~--------------------aa~fL~k~~~----~dEaiell~kaG~f~E 1071 (1987)
-..+.++..+|+.++|+++++. -+.||. +..+++.++. +..+-.++.+.+.|-+
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 3668889999999999998874 233332 3444555443 3344467788888888
Q ss_pred HHHHHHHc-------CCHHHHHHHHHHcCCHHHHHHH
Q 000162 1072 AANIARLT-------GDILLTADLLQKAGNFKEACNL 1101 (1987)
Q Consensus 1072 A~~iAkq~-------Gd~l~Aae~L~kAg~fdeA~rL 1101 (1987)
|-..++.+ .++...+..|.+.|+..+|...
T Consensus 347 A~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 347 ASEALEAALKLRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 87666654 4666778889999999998876
No 180
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.85 E-value=0.071 Score=61.56 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
-|.+||+|+|||||||.+
T Consensus 48 mP~liisGpPG~GKTTsi 65 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSI 65 (333)
T ss_pred CCceEeeCCCCCchhhHH
Confidence 678999999999999997
No 181
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.85 E-value=28 Score=43.41 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHHc
Q 000162 1035 KFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLTGDILLTADLLQKA 1092 (1987)
Q Consensus 1035 ~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~kA 1092 (1987)
+.+...+...+|..|..+... ++-+++|++.|.|.+|++.|.+.++...=.+.+...
T Consensus 245 ~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRC 301 (319)
T ss_pred HHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333456666778888888776 999999999999999999999999987777777665
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.85 E-value=0.085 Score=60.99 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=25.9
Q ss_pred cCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 514 VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 514 l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+++|+.++.. .+.++++|++|||||.+++....
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al 41 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAAL 41 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHH
Confidence 47899999888 88999999999999999855444
No 183
>PRK06851 hypothetical protein; Provisional
Probab=92.83 E-value=0.071 Score=66.55 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHHh
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
+.+.+|+|||||||||++ +.+.+.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~ 55 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFL 55 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999 666664
No 184
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.75 E-value=0.08 Score=58.48 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=18.5
Q ss_pred CcEEEEcCCCCChhHHH--HHHHHh
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
-.++|||+||+||||++ |...++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 35799999999999998 655553
No 185
>PF05729 NACHT: NACHT domain
Probab=92.72 E-value=0.082 Score=57.30 Aligned_cols=16 Identities=44% Similarity=0.819 Sum_probs=15.1
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++|+|.||+||||++
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 6899999999999998
No 186
>PRK10536 hypothetical protein; Provisional
Probab=92.61 E-value=0.13 Score=61.33 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=26.7
Q ss_pred cccCHHHHHhhcc---CCcEEEEcCCCCChhHHHH
Q 000162 512 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILT 543 (1987)
Q Consensus 512 I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVII 543 (1987)
--.+..|..++.. ...+++||.+|||||++++
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISA 92 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3468888877665 7799999999999999983
No 187
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.56 E-value=0.5 Score=45.37 Aligned_cols=62 Identities=27% Similarity=0.542 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh-----hHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGK-----PELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~-----~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
..+..-|..|...|++++|+++| ++|+++....+.. ..+...|.++...|++++|.++|.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYY------EKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678888999999999999999 7888885543321 22667788888888888888777664
No 188
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.56 E-value=0.1 Score=49.85 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=16.7
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...|+|+||+||||+. +.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999997 44444
No 189
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.54 E-value=0.086 Score=57.43 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.|.++|||-|||||||+.
T Consensus 7 ~PNILvtGTPG~GKstl~ 24 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLA 24 (176)
T ss_pred CCCEEEeCCCCCCchhHH
Confidence 578999999999999995
No 190
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.46 E-value=0.7 Score=57.94 Aligned_cols=93 Identities=13% Similarity=0.201 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
.+++..|..++..++|+.|+.+|.+|=... |.. ...+...|..|...|+++.|+.++
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~---------------------P~~-~~a~~~~a~~~~~~g~~~eAl~~~- 59 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLD---------------------PNN-AELYADRAQANIKLGNFTEAVADA- 59 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCC-HHHHHHHHHHHHHcCCHHHHHHHH-
Confidence 467889999999999999999998653210 000 123556677788889999998887
Q ss_pred HhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 923 DLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
++|+++... ....+...|.++...|+|++|.+.|.+
T Consensus 60 -----~~Al~l~P~--~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 60 -----NKAIELDPS--LAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred -----HHHHHhCcC--CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 677766321 123355566666666666666665543
No 191
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.32 E-value=0.11 Score=57.57 Aligned_cols=18 Identities=50% Similarity=0.986 Sum_probs=12.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++.++|+|.|||||||++
T Consensus 24 ~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp ---EEE-B-TTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 678999999999999997
No 192
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=92.32 E-value=12 Score=47.86 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Q 000162 845 WKSRGIKLFYENNYEMATICFEKAK 869 (1987)
Q Consensus 845 WkklA~~l~~~g~ye~A~k~F~rAg 869 (1987)
....|+.+..+|+++.|...|.++-
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~ 145 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAA 145 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3556788888899999999999863
No 193
>PRK01184 hypothetical protein; Provisional
Probab=92.31 E-value=0.087 Score=59.25 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|||+|||||||+.
T Consensus 3 ~i~l~G~~GsGKsT~a 18 (184)
T PRK01184 3 IIGVVGMPGSGKGEFS 18 (184)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999985
No 194
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.30 E-value=0.095 Score=56.09 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=17.9
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+++|+|.||||||+++ +.+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999998 65555
No 195
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.29 E-value=0.13 Score=61.74 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCChhHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI 542 (1987)
...+++|+|+|||||||++
T Consensus 20 ~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred cCCeEEEEcCCCCCHHHHH
Confidence 3778999999999999997
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.16 E-value=0.1 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+.++|+|.||+||||++ +.+-+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999998 54444
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.05 E-value=0.65 Score=44.58 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
-+..+|..+...|+|++|+.+|.+|=+. .. ..+.. .......+...|..|...|++++|.++|
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~~----~~~~~----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~-- 69 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDI-EE----QLGDD----------HPDTANTLNNLGECYYRLGDYEEALEYY-- 69 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-HH----HTTTH----------HHHHHHHHHHHHHHHHHTTHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH----HHCCC----------CHHHHHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 4577899999999999999999987663 11 11110 0112345788999999999999999999
Q ss_pred hCCHHHHHHHHH
Q 000162 924 LGEYERAGKIYE 935 (1987)
Q Consensus 924 aGdyekA~eLy~ 935 (1987)
++|.++++
T Consensus 70 ----~~al~i~~ 77 (78)
T PF13424_consen 70 ----QKALDIFE 77 (78)
T ss_dssp ----HHHHHHHH
T ss_pred ----HHHHhhhc
Confidence 67777654
No 198
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.04 E-value=0.12 Score=61.91 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=24.3
Q ss_pred cCHHHHHhhcc-----CCcEEEEcCCCCChhHHH
Q 000162 514 VTDEQLEMILF-----PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 514 l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI 542 (1987)
+++.|.++++. .+.++|+|++|+||||++
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 57777776654 679999999999999997
No 199
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.01 E-value=0.1 Score=58.32 Aligned_cols=17 Identities=41% Similarity=0.686 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|+||+||||++
T Consensus 4 ~ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQC 20 (188)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57899999999999997
No 200
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=0.076 Score=63.90 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.5
Q ss_pred hhccCCcEEEEcCCCCChhHHH
Q 000162 521 MILFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 521 AI~~~~~~iItGgPGTGKTTVI 542 (1987)
.|.+++.++++|+||||||+..
T Consensus 173 lIt~NRliLlhGPPGTGKTSLC 194 (423)
T KOG0744|consen 173 LITWNRLILLHGPPGTGKTSLC 194 (423)
T ss_pred eeeeeeEEEEeCCCCCChhHHH
Confidence 4566999999999999999985
No 201
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.96 E-value=1.2 Score=45.17 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
++.+...|..++.+|+|+.|.+.|.++-... ..++. ....+...+..|.+.|+++.|.++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 62 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY------------------PKSTY-APNAHYWLGEAYYAQGKYADAAKAF 62 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------CCccc-cHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5678899999999999999999998652210 00000 0112445777888888888888888
Q ss_pred HHhCCHHHHHHHHHHhcC-hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 922 YDLGEYERAGKIYEERCG-KPELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~-~~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
+++...+..... ...+...|.++.+.|++.+|.++|.+
T Consensus 63 ------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 63 ------LAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred ------HHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 444433211000 12345566666666666666665544
No 202
>PRK08233 hypothetical protein; Provisional
Probab=91.96 E-value=0.096 Score=58.30 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
.++.|+|+|||||||++
T Consensus 4 ~iI~I~G~~GsGKtTla 20 (182)
T PRK08233 4 KIITIAAVSGGGKTTLT 20 (182)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999996
No 203
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.95 E-value=0.096 Score=65.29 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=18.0
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.++||+|+||||||.++ +++-+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 36899999999999999 44444
No 204
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.89 E-value=0.15 Score=62.96 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=19.8
Q ss_pred HhhccCCcEEEEcCCCCChhHHH
Q 000162 520 EMILFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 520 ~AI~~~~~~iItGgPGTGKTTVI 542 (1987)
.||...+.++|+|++||||||++
T Consensus 139 ~~v~~~~nilI~G~tGSGKTTll 161 (323)
T PRK13833 139 SAIDSRLNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHcCCeEEEECCCCCCHHHHH
Confidence 35555888999999999999997
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.88 Score=56.66 Aligned_cols=95 Identities=29% Similarity=0.277 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cch-hHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHH-cCCHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKD--TYW-EGRSKATGLKAASDHIRSSNPLEANVILREAANIFEA-IGKADS 916 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~l-a~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~-~G~~dk 916 (1987)
--+.|+..|..++++|+|..|..||..|=. +.- ...++-+.= ++...+.-..+.++...+.+|+++=.. +.-+-.
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n-ra~v~~rLgrl~eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN-RALVNIRLGRLREAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH-hHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence 456899999999999999999999998643 222 122222211 112223334445555555555554322 123345
Q ss_pred HHHHHHHhCCHHHHHHHHHH
Q 000162 917 AAKCFYDLGEYERAGKIYEE 936 (1987)
Q Consensus 917 AAk~y~kaGdyekA~eLy~e 936 (1987)
+++|+..++.|+.|++-|++
T Consensus 327 ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666554
No 206
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.77 E-value=0.12 Score=58.01 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++|+|+|||||||+.
T Consensus 1 ~i~i~G~pGsGKst~a 16 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQC 16 (183)
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999996
No 207
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.69 E-value=0.15 Score=60.67 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=22.6
Q ss_pred ccCHHHHHhhcc--------CCcEEEEcCCCCChhHHH
Q 000162 513 EVTDEQLEMILF--------PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 513 ~l~~eQk~AI~~--------~~~~iItGgPGTGKTTVI 542 (1987)
--++.+++|+.. .+.++|+|.||+||||++
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 345555656554 457899999999999997
No 208
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.67 E-value=0.13 Score=63.85 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.4
Q ss_pred HHHhhcc--CCcEEEEcCCCCChhHHH
Q 000162 518 QLEMILF--PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 518 Qk~AI~~--~~~~iItGgPGTGKTTVI 542 (1987)
=+.+|+. -++||+-|+|||||||++
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 3567776 679999999999999997
No 209
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.63 E-value=0.12 Score=60.44 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
-+++++.|+|||||||++
T Consensus 50 l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp --EEEEESSTTSSHHHHH
T ss_pred cceEEEECCCccchhHHH
Confidence 357999999999999997
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.57 E-value=10 Score=43.70 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
.+++.++..|..++..|+|+.|++.|.+.-+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~ 33 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLID 33 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999999997644
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=16 Score=48.90 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=58.6
Q ss_pred HHHhcCCHHHHHHHHHHhcc------------------HHHHHHHHhhcC---CHHHHHHHHHHhCCHHHHHHHHHHcCC
Q 000162 1023 HYYQLNDKKSMMKFVKAFHS------------------MDLMRNFLKSKS---CFDELLVLEEEAGNFMDAANIARLTGD 1081 (1987)
Q Consensus 1023 ~ylklgD~~~Am~~vk~~~s------------------~d~aa~fL~k~~---~~dEaiell~kaG~f~EA~~iAkq~Gd 1081 (1987)
.++..|+.+.|.++.+.|+- |++..+|.++.. =|.--++...++|+-+||.+..-..+.
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 34555666666655555444 444444444322 144445567788999999988888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000162 1082 ILLTADLLQKAGNFKEACNLTLNYVL 1107 (1987)
Q Consensus 1082 ~l~Aae~L~kAg~fdeA~rL~l~~~~ 1107 (1987)
..+-+++|...|++.+|..++.++.=
T Consensus 773 l~ekv~ay~~~~~~~eAad~A~~~rd 798 (829)
T KOG2280|consen 773 LQEKVKAYLRVGDVKEAADLAAEHRD 798 (829)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHhcC
Confidence 77789999999999999999988843
No 212
>PRK04040 adenylate kinase; Provisional
Probab=91.49 E-value=0.13 Score=58.81 Aligned_cols=17 Identities=41% Similarity=0.728 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|||.|||||||++
T Consensus 3 ~~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVL 19 (188)
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 46899999999999997
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=0.83 Score=57.01 Aligned_cols=103 Identities=24% Similarity=0.337 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
.-+..|..+|+.++|..|.+.|.||-..-- . ..+.++++.+ -.+|.. ..-+-..+-||.+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~--------~------~~~~~~ee~~--~~~~~k----~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLE--------Y------RRSFDEEEQK--KAEALK----LACHLNLAACYLK 269 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhh--------c------cccCCHHHHH--HHHHHH----HHHhhHHHHHHHh
Confidence 347789999999999999999998755200 0 0000111000 001111 0011233556666
Q ss_pred hCCHHHHHHHHHHh-----cChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 924 LGEYERAGKIYEER-----CGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 924 aGdyekA~eLy~e~-----~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++.|..|++.+... .....+.+.|+++...++|+.|...|.++
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 77777666654431 11344778899999999999999988887
No 214
>PRK06762 hypothetical protein; Provisional
Probab=91.44 E-value=0.13 Score=56.77 Aligned_cols=17 Identities=53% Similarity=0.681 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.||+||||++
T Consensus 3 ~li~i~G~~GsGKST~A 19 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIA 19 (166)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999997
No 215
>PRK06526 transposase; Provisional
Probab=91.37 E-value=0.21 Score=59.64 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=24.6
Q ss_pred cccCcccCHHHHHhhcc------CCcEEEEcCCCCChhHHH
Q 000162 508 LDLPFEVTDEQLEMILF------PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 508 ~d~~I~l~~eQk~AI~~------~~~~iItGgPGTGKTTVI 542 (1987)
.+..-.+++.|...... ...++|+|+||||||+++
T Consensus 75 ~~~~~~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKThLa 115 (254)
T PRK06526 75 FDHQRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLA 115 (254)
T ss_pred CccCCCcchHHHHHHhcCchhhcCceEEEEeCCCCchHHHH
Confidence 44434556655544322 668999999999999998
No 216
>PHA00729 NTP-binding motif containing protein
Probab=91.33 E-value=0.13 Score=60.35 Aligned_cols=16 Identities=50% Similarity=0.821 Sum_probs=15.2
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|||.|||||||++
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999997
No 217
>CHL00181 cbbX CbbX; Provisional
Probab=91.16 E-value=0.14 Score=62.21 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++++|+|||||||++
T Consensus 61 ~ill~G~pGtGKT~lA 76 (287)
T CHL00181 61 HMSFTGSPGTGKTTVA 76 (287)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999998
No 218
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.15 E-value=0.14 Score=57.69 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+.|||+||+||||++
T Consensus 1 ii~itG~~gsGKst~~ 16 (179)
T cd02022 1 IIGLTGGIGSGKSTVA 16 (179)
T ss_pred CEEEECCCCCCHHHHH
Confidence 3689999999999997
No 219
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.12 E-value=0.18 Score=62.68 Aligned_cols=18 Identities=50% Similarity=0.997 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++.++|+|+|||||||++
T Consensus 40 ~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 578999999999999997
No 220
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.12 E-value=0.14 Score=62.04 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=15.2
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++++|.|||||||++
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 7999999999999997
No 221
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.11 E-value=1.6 Score=50.36 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=62.1
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCC--HHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGK--ADS 916 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~--~dk 916 (1987)
..+++-|..+|..+...++++.|..+|.++-...- ......+..|.-+|...|+ +++
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P---------------------~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG---------------------ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 46888999999999999999999999987654211 1111123333345566666 477
Q ss_pred HHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 917 AAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 917 AAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
|.+++ ++|.++-.+ ....+...|-.+.+.|+|++|...|.++
T Consensus 129 A~~~l------~~al~~dP~--~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 129 TREMI------DKALALDAN--EVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHH------HHHHHhCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777 555544111 1233555666666666666666666554
No 222
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.01 E-value=12 Score=50.33 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHhccH--HHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc-CCHHHHHHHHHHcCCH
Q 000162 1029 DKKSMMKFVKAFHSM--DLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT-GDILLTADLLQKAGNF 1095 (1987)
Q Consensus 1029 D~~~Am~~vk~~~s~--d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~-Gd~l~Aae~L~kAg~f 1095 (1987)
|-+....|++..+.+ +.|.+.+.+.|.++|.+=++.++|+-.+|..+.... +++.+|.++-...++-
T Consensus 621 Drk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~ 690 (846)
T KOG2066|consen 621 DRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDS 690 (846)
T ss_pred hHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCH
Confidence 345556666654443 458888888888888888888888888888776654 6777766665554443
No 223
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=90.92 E-value=0.15 Score=57.39 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=14.2
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|+|||||||+.
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999996
No 224
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.88 E-value=0.19 Score=61.88 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=19.1
Q ss_pred hhccCCcEEEEcCCCCChhHHH
Q 000162 521 MILFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 521 AI~~~~~~iItGgPGTGKTTVI 542 (1987)
||+..+.++|+|+|||||||++
T Consensus 144 ~v~~~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 144 AVRAHRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHcCCeEEEECCCCCCHHHHH
Confidence 4445889999999999999997
No 225
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.85 E-value=0.13 Score=54.88 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
++++.|.|||||||++
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999996
No 226
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=90.77 E-value=0.15 Score=58.91 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=14.2
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+-||||||||||||+
T Consensus 4 iIglTG~igsGKStva 19 (201)
T COG0237 4 IIGLTGGIGSGKSTVA 19 (201)
T ss_pred EEEEecCCCCCHHHHH
Confidence 4669999999999995
No 227
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.66 E-value=0.22 Score=56.54 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=23.4
Q ss_pred cCHHHHHhhcc----CCcEEEEcCCCCChhHHH
Q 000162 514 VTDEQLEMILF----PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 514 l~~eQk~AI~~----~~~~iItGgPGTGKTTVI 542 (1987)
++++|.+.+.. ...++|+|++|+||||++
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 45666666555 779999999999999997
No 228
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=90.62 E-value=1.3 Score=41.07 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
.|..+|..++..++++.|...|.++-...-.. + ..+...+.+|...|++++|.++|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~----~~~~~~~~~~~~~~~~~~a~~~~-- 57 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------------------A----DAYYNLAAAYYKLGKYEEALEDY-- 57 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------------------H----HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 36788999999999999999998654321100 0 12344555666667777777776
Q ss_pred hCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 924 LGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+++.++... ....+...|.++...|++.+|.+.+.++
T Consensus 58 ----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 58 ----EKALELDPD--NAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred ----HHHHhCCCc--chhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333211 1234556667777777777776665543
No 229
>PRK03839 putative kinase; Provisional
Probab=90.56 E-value=0.18 Score=56.59 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.||+||||+.
T Consensus 2 ~I~l~G~pGsGKsT~~ 17 (180)
T PRK03839 2 IIAITGTPGVGKTTVS 17 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999996
No 230
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.55 E-value=0.26 Score=60.63 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=27.8
Q ss_pred cccCcccCHHHHHhhcc----CCcEEEEcCCCCChhHHH
Q 000162 508 LDLPFEVTDEQLEMILF----PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 508 ~d~~I~l~~eQk~AI~~----~~~~iItGgPGTGKTTVI 542 (1987)
.+-.+.++++-..+|.. .+.++|+|.|||||||++
T Consensus 43 ~d~~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 43 IDPAYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHH
Confidence 44456777776666555 789999999999999998
No 231
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.49 E-value=0.24 Score=60.65 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=21.5
Q ss_pred hhccCCcEEEEcCCCCChhHHH--HHHHH
Q 000162 521 MILFPRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 521 AI~~~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+|+..+.++|+|++|+||||.+ ++...
T Consensus 128 ~v~~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 128 AVLARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHHcCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4555889999999999999997 54443
No 232
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.46 E-value=0.23 Score=46.86 Aligned_cols=16 Identities=50% Similarity=0.864 Sum_probs=15.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|..|+||||++
T Consensus 25 ~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL 40 (62)
T ss_pred EEEEECCCCCCHHHHH
Confidence 8999999999999998
No 233
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.34 E-value=21 Score=42.56 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
..++++++..|..++..|+|+.|...|++.-...- ..+. +.......|..|.+.++++.|+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP------------------~s~~-a~~a~l~la~ayy~~~~y~~A~ 89 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYP------------------FGPY-SQQVQLDLIYAYYKNADLPLAQ 89 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------------------CChH-HHHHHHHHHHHHHhcCCHHHHH
Confidence 34788999999999999999999999997544111 0011 1112335566677778888888
Q ss_pred HHHHHhCCHHHHHHHHHH
Q 000162 919 KCFYDLGEYERAGKIYEE 936 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e 936 (1987)
..| ++.++.+-+
T Consensus 90 ~~~------e~fi~~~P~ 101 (243)
T PRK10866 90 AAI------DRFIRLNPT 101 (243)
T ss_pred HHH------HHHHHhCcC
Confidence 887 666666544
No 234
>PRK14530 adenylate kinase; Provisional
Probab=90.33 E-value=0.2 Score=58.05 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|+||+||||+.
T Consensus 4 ~~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 4 PRILLLGAPGAGKGTQS 20 (215)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46899999999999997
No 235
>PRK15453 phosphoribulokinase; Provisional
Probab=90.31 E-value=0.2 Score=60.41 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHHh
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
.+++.|||+||+||||+. +.++|.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 568899999999999998 556563
No 236
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=90.30 E-value=0.23 Score=51.25 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.4
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q 000162 527 STFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVIIikl~ 547 (1987)
.++|.|+||||||++++.-+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~ 22 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPIL 22 (144)
T ss_pred CEEEECCCCCchhHHHHHHHH
Confidence 579999999999999854444
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=90.29 E-value=0.33 Score=58.21 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=33.9
Q ss_pred hHHHhhcccCCChhhHhhhhhhccccccccCcccCHHHHHhhcc------CCcEEEEcCCCCChhHHH
Q 000162 481 DSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF------PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 481 ~~~~l~~~~~~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~------~~~~iItGgPGTGKTTVI 542 (1987)
.+.+++++..|+. . ..+++...+..-..+..|...+.. ...++|+|+|||||||++
T Consensus 58 ~~~~~~k~a~~p~---~---~~l~~fd~~~~~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 58 KQAMYTRMAAFPA---V---KTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred HHHHHHHhCCCCC---C---CcHhhcccccCCCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHH
Confidence 3444455555554 1 223333344445556555555533 457899999999999998
No 238
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.25 E-value=64 Score=45.36 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCH-------HH------HHHHHHhcCChHHHHHHHHHh
Q 000162 945 KAGECFFLAGQYKHAAEVYARGNFF-------SE------CLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 945 ~aAe~fE~agqy~kAAeLYeKaGd~-------~k------AIemy~kak~wd~AlrLi~qy 992 (1987)
-.|..+...|++++|.+.+.++-.. .. ...++...++++.|.+...+.
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455666678888887777665211 11 122344556666666665443
No 239
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=90.11 E-value=0.2 Score=56.82 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=14.0
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
+.|||+|||||||+.
T Consensus 2 i~itG~~gsGKst~~ 16 (188)
T TIGR00152 2 IGLTGGIGSGKSTVA 16 (188)
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999996
No 240
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.11 E-value=0.21 Score=57.29 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.|.++|+|++|+||||++
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 478999999999999997
No 241
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=6.6 Score=51.00 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADS 916 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dk 916 (1987)
-+.|--|...|.++.-.+.+.+|+++|-||-- ..+..-=.+++..-+.+. +-+.+..+|..|++++-.+-.+-.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~----EhdQAmaaY~tAarl~~G~hlP~L 384 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEG----EHDQAMAAYFTAARLMPGCHLPSL 384 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcc----hHHHHHHHHHHHHHhccCCcchHH
Confidence 45666899999999999999999999999864 222211112222212111 114567789999998877666554
Q ss_pred HHHH-HHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhcC
Q 000162 917 AAKC-FYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARGN 967 (1987)
Q Consensus 917 AAk~-y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKaG 967 (1987)
-+-+ |.+.++++.|-+.+.+.-+ .=.+.+.|--....+.|.+|..+|.++=
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 4333 3456677666666655322 2235566777777777777777776653
No 242
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=89.83 E-value=0.41 Score=46.93 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=30.9
Q ss_pred HHHHHHhCCHHHHHHHHHHh--cC--hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 918 AKCFYDLGEYERAGKIYEER--CG--KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 918 Ak~y~kaGdyekA~eLy~e~--~~--~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+.||.+.|+|++|++++.+. .. .....-.|+++.+.|+|++|.++|.++
T Consensus 32 a~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 67777777777777776431 00 122334488888888888888877764
No 243
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.62 E-value=0.2 Score=56.06 Aligned_cols=16 Identities=56% Similarity=0.773 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++|+|+|||||||+.
T Consensus 1 ~~li~G~~G~GKT~l~ 16 (187)
T cd01124 1 STLLSGGPGTGKTTFA 16 (187)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4789999999999998
No 244
>PRK06851 hypothetical protein; Provisional
Probab=89.59 E-value=0.23 Score=62.17 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+...+|+|+|||||||++ +.+..
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 467999999999999998 54444
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.52 E-value=0.26 Score=53.00 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+|||||||++
T Consensus 1 ~~~i~G~~G~GKT~l~ 16 (165)
T cd01120 1 LILVFGPTGSGKTTLA 16 (165)
T ss_pred CeeEeCCCCCCHHHHH
Confidence 4689999999999998
No 246
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=89.39 E-value=0.2 Score=55.69 Aligned_cols=17 Identities=47% Similarity=0.745 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|||=||+|||||+
T Consensus 5 kvvvitGVpGvGKTTVl 21 (189)
T COG2019 5 KVVVITGVPGVGKTTVL 21 (189)
T ss_pred eEEEEEcCCCCChHHHH
Confidence 57899999999999997
No 247
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=89.37 E-value=0.24 Score=55.51 Aligned_cols=18 Identities=50% Similarity=0.844 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+|+.+|+|+.||||||++
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 789999999999999999
No 248
>PRK10536 hypothetical protein; Provisional
Probab=89.34 E-value=0.27 Score=58.61 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=30.7
Q ss_pred cEEEEecCCCCChhhHhhhcc-CCCcceEEEEecCCCC
Q 000162 5 KFVVIDEAAQLKESESAIPLQ-LPCIQHAILVGDEVQL 41 (1987)
Q Consensus 5 DlVIIDEASQ~~E~e~LipL~-l~~~krlILVGD~kQL 41 (1987)
++||||||++++..+.-..++ .+...++|++||+.|.
T Consensus 178 ~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 178 AVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQC 215 (262)
T ss_pred CEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhc
Confidence 799999999999877655554 4456899999999995
No 249
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=89.27 E-value=2 Score=49.82 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHh
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKA 868 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rA 868 (1987)
.-|..+|..++..++++.|...|.++
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 57899999999999999999999986
No 250
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=89.26 E-value=4.2 Score=44.17 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
.-+..+|..++..|+|+.|...|.++-+... ++..........|.++...|++++|...+.
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-------------------d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~ 109 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAP-------------------DPELKPLARLRLARILLQQGQYDEALATLQ 109 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456788999999999999999987544210 011111123345677777777777777774
Q ss_pred HhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 923 DLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
....-.-. .....-.|+.+...|++++|...|.++
T Consensus 110 ~~~~~~~~---------~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 110 QIPDEAFK---------ALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred hccCcchH---------HHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 32211000 122445788888888888888888764
No 251
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.24 E-value=0.25 Score=55.27 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=15.0
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999997
No 252
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.23 E-value=0.32 Score=61.07 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+...+|+|.||||||+++ +++.+
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l 66 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEEL 66 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHH
Confidence 446999999999999998 55555
No 253
>PRK14531 adenylate kinase; Provisional
Probab=89.21 E-value=0.27 Score=55.58 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||+.
T Consensus 3 ~~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQA 19 (183)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999996
No 254
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=89.16 E-value=3.6 Score=45.94 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
+-+..+.+|-.+...|+++.|.+.|+-.-. .. |.. ...|.-.+-.+...|++.+|+++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~---------~D------------p~~-~~y~~gLG~~~Q~~g~~~~AI~a 91 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI---------YD------------AWS-FDYWFRLGECCQAQKHWGEAIYA 91 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------hC------------ccc-HHHHHHHHHHHHHHhhHHHHHHH
Confidence 345668999999999999999999993221 11 111 22456667778888899999999
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHH
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEV 962 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeL 962 (1987)
| .+|+.+- ..+..-+-.+|.|+-..|+...|.+.
T Consensus 92 Y------~~A~~L~--~ddp~~~~~ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 92 Y------GRAAQIK--IDAPQAPWAAAECYLACDNVCYAIKA 125 (157)
T ss_pred H------HHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 9 4444441 12223344455555555555555544
No 255
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=89.13 E-value=65 Score=39.66 Aligned_cols=143 Identities=13% Similarity=0.057 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchhHHHH-HhhhHH---------hhhh-hh---cCChHHHHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWEGRSK-ATGLKA---------ASDH-IR---SSNPLEANVILREA 904 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la~la~-A~~l~~---------aA~~-l~---s~~~~ea~~~y~eA 904 (1987)
..+.+...|..+...++++.|..++.++-. +.-..... ...... .+.. +. ...+.. .......
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHH
Confidence 345566778889999999999999998532 21111100 000000 0000 00 001100 0111123
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCH-----H-------HH
Q 000162 905 ANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFF-----S-------EC 972 (1987)
Q Consensus 905 AelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~-----~-------kA 972 (1987)
+..+...|++++|.+++ ++++++-.+ ....+...|..+.+.|++++|.++|.++-.. . -.
T Consensus 121 a~~~~~~G~~~~A~~~~------~~al~~~p~--~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 121 AFGLEEAGQYDRAEEAA------RRALELNPD--DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHcCCHHHHHHHH------HHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 33444555555555555 333333111 1234567788888899999999988875221 1 24
Q ss_pred HHHHHhcCChHHHHHHHHHh
Q 000162 973 LAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy 992 (1987)
..++...|++++|.++.++.
T Consensus 193 a~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 45777888888888888664
No 256
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.01 E-value=0.24 Score=59.24 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.1
Q ss_pred hhccCCcEEEEcCCCCChhHHH
Q 000162 521 MILFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 521 AI~~~~~~iItGgPGTGKTTVI 542 (1987)
+|+..+.++|+|++||||||.+
T Consensus 123 ~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 123 AVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp CHHTTEEEEEEESTTSSHHHHH
T ss_pred ccccceEEEEECCCccccchHH
Confidence 3444799999999999999997
No 257
>PRK02496 adk adenylate kinase; Provisional
Probab=88.98 E-value=0.29 Score=55.19 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||++
T Consensus 3 ~i~i~G~pGsGKst~a 18 (184)
T PRK02496 3 RLIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999997
No 258
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.95 E-value=0.28 Score=56.75 Aligned_cols=18 Identities=39% Similarity=0.781 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.++++|+|.|||||||++
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 679999999999999997
No 259
>PLN02200 adenylate kinase family protein
Probab=88.94 E-value=0.27 Score=58.10 Aligned_cols=18 Identities=50% Similarity=0.761 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||+.
T Consensus 43 ~~ii~I~G~PGSGKsT~a 60 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQC 60 (234)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 347899999999999996
No 260
>PRK13531 regulatory ATPase RavA; Provisional
Probab=88.93 E-value=0.28 Score=63.17 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|.|.|||||||++
T Consensus 39 g~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIA 56 (498)
T ss_pred CCCEEEECCCChhHHHHH
Confidence 889999999999999998
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=88.86 E-value=0.31 Score=60.05 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.+++.|+|||||||++
T Consensus 34 ~~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSI 51 (319)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999997
No 262
>PRK03846 adenylylsulfate kinase; Provisional
Probab=88.75 E-value=0.42 Score=54.76 Aligned_cols=29 Identities=34% Similarity=0.381 Sum_probs=23.0
Q ss_pred cCHHHHHhhcc--CCcEEEEcCCCCChhHHH
Q 000162 514 VTDEQLEMILF--PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 514 l~~eQk~AI~~--~~~~iItGgPGTGKTTVI 542 (1987)
.+..++++... +..+.|+|.||+||||++
T Consensus 11 v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla 41 (198)
T PRK03846 11 VTKAQREQLHGHKGVVLWFTGLSGSGKSTVA 41 (198)
T ss_pred CCHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 56677766553 558899999999999997
No 263
>PRK12377 putative replication protein; Provisional
Probab=88.74 E-value=0.42 Score=57.01 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.2
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..++|+|+||||||+++ |...+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999998 44444
No 264
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=88.70 E-value=0.29 Score=56.14 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+.||||||+||||+.
T Consensus 3 ~i~itG~~gsGKst~~ 18 (195)
T PRK14730 3 RIGLTGGIASGKSTVG 18 (195)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999997
No 265
>PRK14532 adenylate kinase; Provisional
Probab=88.68 E-value=0.29 Score=55.31 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=14.0
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|+|||||||+.
T Consensus 3 i~~~G~pGsGKsT~a 17 (188)
T PRK14532 3 LILFGPPAAGKGTQA 17 (188)
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999996
No 266
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=88.67 E-value=5.9 Score=52.11 Aligned_cols=202 Identities=12% Similarity=0.044 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc--------CCHH
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG--------NFFS 970 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa--------Gd~~ 970 (1987)
.++.--+-++..-.+|++|++||..+-.|++ ...++++++|---.+.++|+-.++.--+. ..+-
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~--------dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEK--------DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI 147 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 3455566666667799999999955544432 34577888888888888888777642221 2334
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhccc--ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHH
Q 000162 971 ECLAVCSRGELFDIGLQYINYWKQHVD--TDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRN 1048 (1987)
Q Consensus 971 kAIemy~kak~wd~AlrLi~qy~~~~e--~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~ 1048 (1987)
.++-.+.-.+.+..|..+++.+.+... .+... ++.....+.+. ....+.|.++.|.+-+...+ ..
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~-------~e~se~~Ly~n-~i~~E~g~~q~ale~L~~~e-----~~ 214 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED-------YEHSELLLYQN-QILIEAGSLQKALEHLLDNE-----KQ 214 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH-------HHHHHHHHHHH-HHHHHcccHHHHHHHHHhhh-----hH
Confidence 444455566788888999988877643 22111 11111122221 23345666776666544322 12
Q ss_pred HHhhcCCHHHHHHHHHHhCCHHHHHHHHHH----cCCHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhcCCCCCCCCchh
Q 000162 1049 FLKSKSCFDELLVLEEEAGNFMDAANIARL----TGDILLTADLLQKA-GNFKEACNLTLNYVLSNSLWSPGSKGWPLKQ 1123 (1987)
Q Consensus 1049 fL~k~~~~dEaiell~kaG~f~EA~~iAkq----~Gd~l~Aae~L~kA-g~fdeA~rL~l~~~~~~~LW~~~~~g~p~k~ 1123 (1987)
++.+......-++++.+.|++++|..++.. .++-...-+.+.++ |.+.+.... .-.+.+.+|.+--.+.+|++
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~--lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEA--LKALYAILSEKYPRHECPRR 292 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHH--HHHHHHHHhhcCcccccchh
Confidence 222333334456778888888888777665 35555555555554 544443333 12345566666667777665
No 267
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.61 E-value=0.38 Score=57.28 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.+++.|+||||||+++
T Consensus 100 ~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999998
No 268
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.55 E-value=0.32 Score=55.67 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCChhHHH--HHHHHhhhh
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLFQNEK 551 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~~~~~ 551 (1987)
+.+|+||-||+||||-. +.++++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 46899999999999998 877776553
No 269
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.52 E-value=0.33 Score=63.21 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=24.4
Q ss_pred ccCHHHHHhhcc-----CCcEEEEcCCCCChhHHH
Q 000162 513 EVTDEQLEMILF-----PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 513 ~l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI 542 (1987)
-+++.|.+.+.. .|.++|||++|+||||++
T Consensus 225 g~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL 259 (486)
T TIGR02533 225 GMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL 259 (486)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 357777766554 789999999999999996
No 270
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.48 E-value=0.31 Score=61.10 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+...+++|+|||||||++
T Consensus 38 ~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred CeEEEEecCCCCCHHHHH
Confidence 345699999999999997
No 271
>PRK08118 topology modulation protein; Reviewed
Probab=88.46 E-value=0.32 Score=54.41 Aligned_cols=16 Identities=31% Similarity=0.758 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.||+||||++
T Consensus 3 rI~I~G~~GsGKSTla 18 (167)
T PRK08118 3 KIILIGSGGSGKSTLA 18 (167)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999996
No 272
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.43 E-value=9.7 Score=49.31 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=55.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 000162 946 AGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYY 1025 (1987)
Q Consensus 946 aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~yl 1025 (1987)
.|..|.+.+.|+.|.+.|.++-.-.+.-++..+.+..+++++..++..-... +.+. -...++..+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~p-------------e~A~-e~r~kGne~F 369 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINP-------------EKAE-EEREKGNEAF 369 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhCh-------------hHHH-HHHHHHHHHH
Confidence 4445555566666666666643222222333333444444443322211100 0011 1234477889
Q ss_pred hcCCHHHHHHHHHH--hccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc
Q 000162 1026 QLNDKKSMMKFVKA--FHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT 1079 (1987)
Q Consensus 1026 klgD~~~Am~~vk~--~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~ 1079 (1987)
+.|||..||+.+.. -...+++.-|.. .+-.|.+.|.+.+|.+-++..
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsN-------RAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSN-------RAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHH-------HHHHHHHHhhHHHHHHHHHHH
Confidence 99999999987764 122333333322 233445666666666655544
No 273
>PRK04296 thymidine kinase; Provisional
Probab=88.41 E-value=0.31 Score=55.64 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=16.8
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q 000162 527 STFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVIIikl~ 547 (1987)
+.+|||+||+||||.++-.+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~ 24 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAY 24 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 678999999999999843333
No 274
>PRK13342 recombination factor protein RarA; Reviewed
Probab=88.41 E-value=0.3 Score=62.34 Aligned_cols=18 Identities=44% Similarity=0.626 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|+|||||||++
T Consensus 36 ~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 458999999999999997
No 275
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.27 E-value=0.36 Score=59.89 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.0
Q ss_pred HHhhccCCcEEEEcCCCCChhHHH
Q 000162 519 LEMILFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 519 k~AI~~~~~~iItGgPGTGKTTVI 542 (1987)
+.||+..+.++|+|++||||||.+
T Consensus 154 ~~~v~~~~nili~G~tgSGKTTll 177 (332)
T PRK13900 154 EHAVISKKNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHcCCcEEEECCCCCCHHHHH
Confidence 346667899999999999999997
No 276
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.25 E-value=2 Score=40.11 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcC-CHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIG-KADSAAK 919 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G-~~dkAAk 919 (1987)
++..|..+|..++..++|+.|+.+|.++=+.. |.. ...+..-+..|...| ++++|++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---------------------p~~-~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---------------------PNN-AEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---------------------TTH-HHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CCC-HHHHHHHHHHHHHhCccHHHHHH
Confidence 57889999999999999999999999764421 111 123555666677777 6888888
Q ss_pred HH
Q 000162 920 CF 921 (1987)
Q Consensus 920 ~y 921 (1987)
+|
T Consensus 60 ~~ 61 (69)
T PF13414_consen 60 DF 61 (69)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 277
>PRK10436 hypothetical protein; Provisional
Probab=88.23 E-value=0.39 Score=62.05 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=24.4
Q ss_pred ccCHHHHHhhcc-----CCcEEEEcCCCCChhHHH
Q 000162 513 EVTDEQLEMILF-----PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 513 ~l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI 542 (1987)
-+++.|.+.++. .|.++|||+.|+||||++
T Consensus 201 G~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 201 GMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred CcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 366777665553 889999999999999996
No 278
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.21 E-value=0.55 Score=57.46 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=37.3
Q ss_pred HHHhhcccCCChhhHh-hhhhhccccccccCcccCHHHHHhhcc--CCcEEEEcCCCCChhHHH
Q 000162 482 SLLLMKFYPLSSGIVS-HLLSDRDGRELDLPFEVTDEQLEMILF--PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 482 ~~~l~~~~~~s~~~~~-~l~~~~~~~e~d~~I~l~~eQk~AI~~--~~~~iItGgPGTGKTTVI 542 (1987)
+..|+...++++.|.- .|+...+ .+..+.-+-.=+.+|++ -+++|+-|+|||||||++
T Consensus 119 ~R~~~qh~PLaermRPktL~dyvG---Q~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 119 IRQMLQHKPLAERMRPKTLDDYVG---QSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLA 179 (554)
T ss_pred HHHHhccCChhhhcCcchHHHhcc---hhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHH
Confidence 3334555556654433 3444444 22334445566777877 679999999999999997
No 279
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.18 E-value=1.8 Score=52.33 Aligned_cols=115 Identities=23% Similarity=0.306 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
.+..|..|..+++.++|+.|+.+|.+|=.. +|..+ ..|..-|..|.+.|+++.|++=.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---------------------~P~nA-VyycNRAAAy~~Lg~~~~AVkDc 138 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL---------------------DPTNA-VYYCNRAAAYSKLGEYEDAVKDC 138 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------------------CCCcc-hHHHHHHHHHHHhcchHHHHHHH
Confidence 456788899999999999999999865220 01111 11222223344444444444433
Q ss_pred HHhCCHHHHHHHHHHhcC--hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 922 YDLGEYERAGKIYEERCG--KPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~--~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
+.|+.+ .. ...|.+.|-.|...|+|.+|++.|.|+=+ +.=...-|...++++++-..
T Consensus 139 ------e~Al~i----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLe------ldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 139 ------ESALSI----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE------LDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred ------HHHHhc----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc------cCCCcHHHHHHHHHHHHHhc
Confidence 222222 11 23478899999999999999999877633 33233345566777765433
No 280
>PRK14528 adenylate kinase; Provisional
Probab=88.15 E-value=0.35 Score=55.00 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||+.
T Consensus 3 ~i~i~G~pGsGKtt~a 18 (186)
T PRK14528 3 NIIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999997
No 281
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=88.15 E-value=0.43 Score=52.57 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=26.5
Q ss_pred cccCHHHHHhhcc-------C---CcEEEEcCCCCChhHHHH
Q 000162 512 FEVTDEQLEMILF-------P---RSTFILGRSGTGKTTILT 543 (1987)
Q Consensus 512 I~l~~eQk~AI~~-------~---~~~iItGgPGTGKTTVII 543 (1987)
++|-+.|++||.. . +..+|.|++|||||-+++
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 6788899999887 2 789999999999999984
No 282
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.04 E-value=0.41 Score=63.45 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=24.7
Q ss_pred ccCHHHHHhhcc-----CCcEEEEcCCCCChhHHH
Q 000162 513 EVTDEQLEMILF-----PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 513 ~l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI 542 (1987)
-+++.|.+.+.. .|.++|||++|+||||++
T Consensus 299 g~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 299 GFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 356777666654 789999999999999997
No 283
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.02 E-value=0.37 Score=60.68 Aligned_cols=18 Identities=50% Similarity=0.805 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++.++|+|.|||||||++
T Consensus 55 ~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999997
No 284
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=87.99 E-value=0.33 Score=54.73 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCChhHHH--HHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMK 545 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iik 545 (1987)
|+++|||-.|+||||+| +++
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999998 665
No 285
>PRK06217 hypothetical protein; Validated
Probab=87.99 E-value=0.34 Score=54.74 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.||+||||+.
T Consensus 3 ~I~i~G~~GsGKSTla 18 (183)
T PRK06217 3 RIHITGASGSGTTTLG 18 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999995
No 286
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.99 E-value=0.39 Score=52.92 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|.|||||||+.
T Consensus 4 ~~~i~l~G~~GsGKstla 21 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CCeEEEEcCCCCCHHHHH
Confidence 347899999999999996
No 287
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=87.95 E-value=0.37 Score=54.94 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=16.7
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++.|+|+||+||||++ |..++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999997 44444
No 288
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.94 E-value=0.32 Score=60.54 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.2
Q ss_pred HHHHhhccCCcEEEEcCCCCChhHHH
Q 000162 517 EQLEMILFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 517 eQk~AI~~~~~~iItGgPGTGKTTVI 542 (1987)
--+.||+..+.++|+|++||||||++
T Consensus 154 ~l~~~v~~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 154 FLHACVVGRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHcCCeEEEECCCCccHHHHH
Confidence 34556777899999999999999997
No 289
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=87.92 E-value=0.45 Score=64.32 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=17.1
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.++|.|.||||||+++ +++.+
T Consensus 783 vLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999998 55544
No 290
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=87.85 E-value=0.34 Score=56.14 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=14.3
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+-|||||||||||++
T Consensus 7 ~igitG~igsGKSt~~ 22 (208)
T PRK14731 7 LVGVTGGIGSGKSTVC 22 (208)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4568999999999997
No 291
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.79 E-value=22 Score=48.26 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=66.0
Q ss_pred HHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHH
Q 000162 849 GIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYE 928 (1987)
Q Consensus 849 A~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdye 928 (1987)
=..+++...|+.|.+.-..-+.. +..-.+.+.++|.+..+-|+++.|...|+++=.+-
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d----------------------~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLD----------------------EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 35577778888887765543332 12224456678888888889999999888665544
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHH
Q 000162 929 RAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYI 989 (1987)
Q Consensus 929 kA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi 989 (1987)
+--.+..+--+.+.+++.+.|+|....-.- .......-.+.+|+|.++-++.-++|
T Consensus 399 e~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-----a~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 399 EPSEVIKKFLDAQRIKNLTSYLEALHKKGL-----ANSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred ChHHHHHHhcCHHHHHHHHHHHHHHHHccc-----ccchhHHHHHHHHHHhcchHHHHHHH
Confidence 444444443456777788888775422111 11223333444455555544444444
No 292
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.78 E-value=3 Score=56.77 Aligned_cols=115 Identities=13% Similarity=0.044 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchh--HHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHc--C
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWE--GRSKATGLKAASDHIRSSNPLEANVILREAANIFEAI--G 912 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la--~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~--G 912 (1987)
..+++-.+.+|......|.+++|...+.++=. ++.. ....+..+. .++.+++|...+++. .
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-------------~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-------------RQQGIEAGRAEIELYFSG 149 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-------------HhccHHHHHHHHHHHhhc
Confidence 34577888999999999999999999998643 2221 111111111 122233333333221 0
Q ss_pred CH------HHHHHHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 913 KA------DSAAKCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 913 ~~------dkAAk~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.+ -.-+.+..+.|.|++|.++|++.+. ...+...|..+...|+.++|...|.++
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 1124445555555555555555331 456888999999999999999998887
No 293
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=87.72 E-value=0.37 Score=52.26 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.||+||||+.
T Consensus 1 li~l~G~~GsGKST~a 16 (150)
T cd02021 1 IIVVMGVSGSGKSTVG 16 (150)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 3789999999999996
No 294
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.69 E-value=0.41 Score=53.69 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.||+||||+.
T Consensus 3 ~~i~l~G~~gsGKst~a 19 (175)
T cd00227 3 RIIILNGGSSAGKSSIA 19 (175)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47899999999999996
No 295
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=87.67 E-value=0.36 Score=55.52 Aligned_cols=15 Identities=47% Similarity=0.501 Sum_probs=14.0
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
+.||||||+||||+.
T Consensus 2 i~itG~~gsGKst~~ 16 (196)
T PRK14732 2 IGITGMIGGGKSTAL 16 (196)
T ss_pred EEEECCCCccHHHHH
Confidence 679999999999997
No 296
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=87.66 E-value=0.46 Score=51.24 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.+++|+|.|||||++++
T Consensus 21 ~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp SS-EEEECCTTSSHHHHH
T ss_pred CCcEEEEcCCCCCHHHHH
Confidence 789999999999999995
No 297
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.65 E-value=0.41 Score=62.10 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++++|+|||||||++
T Consensus 36 ~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345799999999999997
No 298
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=87.64 E-value=0.43 Score=59.22 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|.|+|||||||++
T Consensus 30 ~~vLl~G~pG~gKT~la 46 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAV 46 (334)
T ss_pred CcEEEEcCCCCCHHHHH
Confidence 57999999999999996
No 299
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.62 E-value=5.8 Score=50.66 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
..|+..+..|+..|-.++|+.|..=|.+|-.
T Consensus 392 ~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred CCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677889999999999999999999998754
No 300
>PRK05480 uridine/cytidine kinase; Provisional
Probab=87.60 E-value=0.38 Score=55.38 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+.++.|+|+||+||||++ |.+.+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 347889999999999997 44444
No 301
>PRK05541 adenylylsulfate kinase; Provisional
Probab=87.55 E-value=0.43 Score=53.39 Aligned_cols=18 Identities=44% Similarity=0.602 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|.||+||||++
T Consensus 7 ~~~I~i~G~~GsGKst~a 24 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIA 24 (176)
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 458899999999999997
No 302
>PRK08181 transposase; Validated
Probab=87.50 E-value=0.62 Score=56.26 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=34.9
Q ss_pred hHHHhhcccCCChhhHhhhhhhccccccccCcccCHHHHHhhcc-------CCcEEEEcCCCCChhHHH
Q 000162 481 DSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF-------PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 481 ~~~~l~~~~~~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~-------~~~~iItGgPGTGKTTVI 542 (1987)
++.++++.-.|+. . ..+++...+..-.+++.|..+... ...++|+|+||||||..+
T Consensus 61 ~~~r~lk~A~~p~---~---~tle~fd~~~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa 123 (269)
T PRK08181 61 RIERHLAEAHLPP---G---KTLDSFDFEAVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLA 123 (269)
T ss_pred HHHHHHHHCCCCC---C---CCHhhCCccCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHH
Confidence 4445555555554 2 223333234344567777777643 457999999999999997
No 303
>PRK08356 hypothetical protein; Provisional
Probab=87.49 E-value=0.32 Score=55.58 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||++
T Consensus 7 ~i~~~G~~gsGK~t~a 22 (195)
T PRK08356 7 IVGVVGKIAAGKTTVA 22 (195)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999998
No 304
>PRK00279 adk adenylate kinase; Reviewed
Probab=87.36 E-value=0.41 Score=55.53 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||+.
T Consensus 2 ~I~v~G~pGsGKsT~a 17 (215)
T PRK00279 2 RLILLGPPGAGKGTQA 17 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999996
No 305
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=87.36 E-value=0.38 Score=52.50 Aligned_cols=13 Identities=54% Similarity=0.777 Sum_probs=12.2
Q ss_pred EEcCCCCChhHHH
Q 000162 530 ILGRSGTGKTTIL 542 (1987)
Q Consensus 530 ItGgPGTGKTTVI 542 (1987)
|.|+||+||||+.
T Consensus 1 i~G~PgsGK~t~~ 13 (151)
T PF00406_consen 1 ILGPPGSGKGTQA 13 (151)
T ss_dssp EEESTTSSHHHHH
T ss_pred CcCCCCCChHHHH
Confidence 6899999999997
No 306
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.35 E-value=0.44 Score=53.92 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=17.1
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++.|+|+|||||||++ +.+.+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999998 55544
No 307
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=87.34 E-value=0.37 Score=63.08 Aligned_cols=18 Identities=44% Similarity=0.639 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
..+++|||+||+||||+|
T Consensus 45 ~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTV 62 (519)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 348999999999999997
No 308
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=87.29 E-value=0.4 Score=55.42 Aligned_cols=15 Identities=40% Similarity=0.621 Sum_probs=14.1
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|+||+||||+.
T Consensus 2 I~i~G~pGsGKsT~a 16 (210)
T TIGR01351 2 LVLLGPPGSGKGTQA 16 (210)
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999996
No 309
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.28 E-value=11 Score=46.27 Aligned_cols=113 Identities=11% Similarity=0.045 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCH----HHHHH--
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFF----SECLA-- 974 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~----~kAIe-- 974 (1987)
|.-.++.|.++.++..|...|. .+.+.+- .+..++...|..+|..+++++|+++|..+-+. -+||.
T Consensus 259 fllLskvY~ridQP~~AL~~~~------~gld~fP--~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAci 330 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIG------EGLDSFP--FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACI 330 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHh------hhhhcCC--chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeee
Confidence 6667788888888888887773 3333221 11355778999999999999999999987332 34443
Q ss_pred --HHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000162 975 --VCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMK 1035 (1987)
Q Consensus 975 --my~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~ 1035 (1987)
-|.-.++.+.|+++-++..+..-. ..+.+-..+.|++-.++++-+..
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~--------------speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQ--------------SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCC--------------ChHHHhhHHHHHHhhcchhhhHH
Confidence 244566778888876655554221 12234455777777777665544
No 310
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=87.28 E-value=0.61 Score=52.63 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=24.0
Q ss_pred cCHHHHHhhcc--CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 514 VTDEQLEMILF--PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 514 l~~eQk~AI~~--~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+..++++... ...++|+|.||+||||++ +...+
T Consensus 5 ~~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 5 ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455655543 558899999999999997 44443
No 311
>PRK12370 invasion protein regulator; Provisional
Probab=87.26 E-value=23 Score=47.21 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKA 868 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rA 868 (1987)
.++.-|..+|..+...|++++|..+|.+|
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 364 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQA 364 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46777888888888889999999999875
No 312
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.13 E-value=0.36 Score=58.71 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|+|||||||++
T Consensus 30 ~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999997
No 313
>PRK07261 topology modulation protein; Provisional
Probab=87.10 E-value=0.43 Score=53.58 Aligned_cols=16 Identities=44% Similarity=0.719 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.||+||||++
T Consensus 2 ri~i~G~~GsGKSTla 17 (171)
T PRK07261 2 KIAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3789999999999997
No 314
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=87.08 E-value=0.44 Score=56.52 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.|||||||++
T Consensus 1 LIvl~G~pGSGKST~a 16 (249)
T TIGR03574 1 LIILTGLPGVGKSTFS 16 (249)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 3789999999999997
No 315
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=86.97 E-value=0.47 Score=54.96 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|.|+|||||||++
T Consensus 22 ~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp C--EEEES-CCCTHHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 668999999999999995
No 316
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=86.91 E-value=0.43 Score=64.73 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=19.3
Q ss_pred HHhhcc--CCcEEEEcCCCCChhHHH
Q 000162 519 LEMILF--PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 519 k~AI~~--~~~~iItGgPGTGKTTVI 542 (1987)
+.+|.. .++++|+|+|||||||++
T Consensus 44 ~~~i~~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 44 RRAIKADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred HHHHhcCCCceEEEECCCCCCHHHHH
Confidence 344555 568999999999999996
No 317
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=86.88 E-value=0.42 Score=55.43 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+.||||+|+||||+.
T Consensus 8 ~IglTG~iGsGKStv~ 23 (204)
T PRK14733 8 PIGITGGIASGKSTAT 23 (204)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999996
No 318
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=86.88 E-value=21 Score=48.83 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC----H---
Q 000162 897 ANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF----F--- 969 (1987)
Q Consensus 897 a~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd----~--- 969 (1987)
.+....+|.++.+..|...+++.-.-++.+|-+ =|.+ ....+...|+...+.|.+++|..++.++=. +
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a 122 (694)
T PRK15179 48 GRELLQQARQVLERHAAVHKPAAALPELLDYVR---RYPH--TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA 122 (694)
T ss_pred HHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHH---hccc--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH
Confidence 455688899999999999888887755554432 1221 145678899999999999999999988722 2
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHhhhcc
Q 000162 970 -SECLAVCSRGELFDIGLQYINYWKQHV 996 (1987)
Q Consensus 970 -~kAIemy~kak~wd~AlrLi~qy~~~~ 996 (1987)
...+.++.+.+.+++|+..++++.+..
T Consensus 123 ~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 123 FILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 233446678888898888887766543
No 319
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=86.86 E-value=0.42 Score=54.75 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+.||||+||||||+.
T Consensus 4 ~i~ltG~~gsGKst~~ 19 (194)
T PRK00081 4 IIGLTGGIGSGKSTVA 19 (194)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999997
No 320
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=86.78 E-value=8.1 Score=43.13 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
...-+..+|..+...|++++|..+|.++-.... ++......+...|..|...|++++|+++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~ 94 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEE-------------------DPNDRSYILYNMGIIYASNGEHDKALEY 94 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-------------------ccchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344578899999999999999999997533100 0000112466778888889999999988
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHH
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAA 960 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAA 960 (1987)
| .+|+++... ....+...|..+...|+...|.
T Consensus 95 ~------~~al~~~p~--~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 95 Y------HQALELNPK--QPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred H------HHHHHhCcc--cHHHHHHHHHHHHHcCChHhHh
Confidence 8 556555322 1233445566666666654443
No 321
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=86.72 E-value=0.42 Score=54.19 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+||+||||++
T Consensus 3 ~~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLL 19 (186)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36899999999999997
No 322
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=86.68 E-value=0.55 Score=56.76 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCChhHHHH
Q 000162 525 PRSTFILGRSGTGKTTILT 543 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVII 543 (1987)
-+.++.-|+||||||+++.
T Consensus 57 lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred CceEEeeCCCCCcHhHHHH
Confidence 5789999999999999974
No 323
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=86.67 E-value=0.5 Score=56.73 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhHHH--HHHHHhh
Q 000162 528 TFILGRSGTGKTTIL--TMKLFQN 549 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI--Iikl~~~ 549 (1987)
+-|||+||+||||++ +.++|+.
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 568999999999998 6667743
No 324
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=86.60 E-value=0.5 Score=52.62 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++++|.||+||||++
T Consensus 2 ~~~~~G~~G~GKTt~~ 17 (173)
T cd03115 2 VILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999998
No 325
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.58 E-value=16 Score=43.17 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHH---HHHHcCC
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWEGRSKATGLKAASDHIRSSNPLEANVILREAAN---IFEAIGK 913 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAe---lYe~~G~ 913 (1987)
.+...-|--+|.++-+.|+.+.|.+.|++|=. +.-..+...+|..-. ....+.++...|++|.. +++..+-
T Consensus 66 Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC----~qg~~~eA~q~F~~Al~~P~Y~~~s~t 141 (250)
T COG3063 66 PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC----AQGRPEEAMQQFERALADPAYGEPSDT 141 (250)
T ss_pred cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH----hCCChHHHHHHHHHHHhCCCCCCcchh
Confidence 56778999999999999999999999999744 222334444544311 22345666666776664 3445566
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 914 ADSAAKCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 914 ~dkAAk~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+..+.-|..++|++.+|-+.+..... .....+.|.-..+.|+|..|-..|++.
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 67777888888888888877765221 234667788888888888887776654
No 326
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=86.55 E-value=0.5 Score=53.91 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHH--HHHHHh
Q 000162 528 TFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
+-|+|+||+||||++ +...+.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 569999999999998 656663
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.55 E-value=19 Score=48.77 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=71.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHhcc-----cchhHHHHHhhhHHhhhh----hhcCChH-HHHHHHHHHHHHHHH---cCCH
Q 000162 848 RGIKLFYENNYEMATICFEKAKD-----TYWEGRSKATGLKAASDH----IRSSNPL-EANVILREAANIFEA---IGKA 914 (1987)
Q Consensus 848 lA~~l~~~g~ye~A~k~F~rAgd-----~~la~la~A~~l~~aA~~----l~s~~~~-ea~~~y~eAAelYe~---~G~~ 914 (1987)
+-+.++-.|+||.|+...-+... .+++.....+++-..... +.+.++. ...-.|-.....|.+ ..++
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~ 343 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDP 343 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-H
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCH
Confidence 36778888999999999887222 223322223343322222 1111111 111245566666665 4567
Q ss_pred HHHHHHHHHhCCHHH---------HH-HHHHHh------------cC-----------------------hhHHHHHHHH
Q 000162 915 DSAAKCFYDLGEYER---------AG-KIYEER------------CG-----------------------KPELEKAGEC 949 (1987)
Q Consensus 915 dkAAk~y~kaGdyek---------A~-eLy~e~------------~~-----------------------~~ll~~aAe~ 949 (1987)
..|+++|.-...+.. ++ ++..+. .| .....++|+-
T Consensus 344 ~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~ 423 (613)
T PF04097_consen 344 REALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAARE 423 (613)
T ss_dssp HHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHH
Confidence 888888876665332 11 111110 00 2347789999
Q ss_pred HHHcCCHHHHHHHHHhcCCHHHHHHHHHh
Q 000162 950 FFLAGQYKHAAEVYARGNFFSECLAVCSR 978 (1987)
Q Consensus 950 fE~agqy~kAAeLYeKaGd~~kAIemy~k 978 (1987)
++..|++.+|+.+|.-+|+|++++++..+
T Consensus 424 ~e~~g~~~dAi~Ly~La~~~d~vl~lln~ 452 (613)
T PF04097_consen 424 AEERGRFEDAILLYHLAEEYDKVLSLLNR 452 (613)
T ss_dssp HHHCT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999998765
No 328
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=86.53 E-value=65 Score=43.04 Aligned_cols=142 Identities=13% Similarity=0.056 Sum_probs=83.7
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhccc----ch----hHHHHHhhhHHhhhhhhcCCh---HHHHHHHHHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDT----YW----EGRSKATGLKAASDHIRSSNP---LEANVILREAANI 907 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~----~l----a~la~A~~l~~aA~~l~s~~~---~ea~~~y~eAAel 907 (1987)
..+.+.|...-...+...+|+.|.++|.+|... .. +.+....+..++|..+...-. ...-..|..-+.+
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI 694 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence 346677877667777779999999999987552 11 112222222233322220000 0111223444444
Q ss_pred HHHcCCHHHHHHHHHHhCCHHHHHHHHHHh---cC--hhHHHHHHHHHHHcCCHHHHHHHHHhc--------CCHHHHHH
Q 000162 908 FEAIGKADSAAKCFYDLGEYERAGKIYEER---CG--KPELEKAGECFFLAGQYKHAAEVYARG--------NFFSECLA 974 (1987)
Q Consensus 908 Ye~~G~~dkAAk~y~kaGdyekA~eLy~e~---~~--~~ll~~aAe~fE~agqy~kAAeLYeKa--------Gd~~kAIe 974 (1987)
|++.++.+.|.+.| ... |- ..++.-.|+.-|+.|+.-+|--++.++ ..+-++|.
T Consensus 695 ~e~~~~ie~aR~aY-------------~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 695 EEQMENIEMAREAY-------------LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred HHHHHHHHHHHHHH-------------HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 44444444444444 331 22 366888888888888888888888887 44577888
Q ss_pred HHHhcCChHHHHHHHHHhh
Q 000162 975 VCSRGELFDIGLQYINYWK 993 (1987)
Q Consensus 975 my~kak~wd~AlrLi~qy~ 993 (1987)
|=.++|+-+.|-.++.+-.
T Consensus 762 ~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 8888888887777665433
No 329
>PF13173 AAA_14: AAA domain
Probab=86.50 E-value=0.52 Score=50.17 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.++++|+|+.|+||||++
T Consensus 2 ~~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLL 19 (128)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 368999999999999997
No 330
>PRK06547 hypothetical protein; Provisional
Probab=86.48 E-value=0.48 Score=53.44 Aligned_cols=18 Identities=50% Similarity=0.680 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+|||||||+.
T Consensus 15 ~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLA 32 (172)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 447778899999999996
No 331
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.47 E-value=0.47 Score=54.26 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=14.3
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
++.|+|+|||||||++
T Consensus 1 ii~i~G~sgsGKTtla 16 (187)
T cd02024 1 IVGISGVTNSGKTTLA 16 (187)
T ss_pred CEEEECCCCCCHHHHH
Confidence 3679999999999997
No 332
>PRK07667 uridine kinase; Provisional
Probab=86.45 E-value=0.51 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.158 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
-++-|+|+||+||||++ +.+.+
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999997 44444
No 333
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=86.36 E-value=0.51 Score=57.99 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.||+||||+.
T Consensus 133 ~~~I~l~G~~GsGKStvg 150 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLG 150 (309)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 668999999999999996
No 334
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.34 E-value=0.59 Score=56.86 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 38 ~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346899999999999997
No 335
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.24 E-value=29 Score=43.95 Aligned_cols=139 Identities=17% Similarity=0.125 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhc--ccchhH--HHHHhhhHHhhhhhhcCChHHHHHHH------HHHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAK--DTYWEG--RSKATGLKAASDHIRSSNPLEANVIL------REAANIFEA 910 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAg--d~~la~--la~A~~l~~aA~~l~s~~~~ea~~~y------~eAAelYe~ 910 (1987)
+-...-.+|...+..|++.+|..-|+++. |++..+ -..+..+..+..... ..+.+++ +.|+..|-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~----~~~L~~~Lf~~~~~ta~~wfV- 305 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ----DSALMDYLFAKVKYTASHWFV- 305 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh----HHHHHHHHHhhhhcchhhhhh-
Confidence 44456778999999999999999999854 444322 122222222221111 1111111 12222222
Q ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhcCC--------HHHHHHHHH
Q 000162 911 IGKADSAAKCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARGNF--------FSECLAVCS 977 (1987)
Q Consensus 911 ~G~~dkAAk~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKaGd--------~~kAIemy~ 977 (1987)
++......++|++|..+.++..+ .+.+.--|..+..+|..++|+-.|..+.+ |.-.+..|.
T Consensus 306 ------~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 306 ------HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred ------hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 12223334444554444333111 23455567778888888888888777644 456666777
Q ss_pred hcCChHHHHHHHH
Q 000162 978 RGELFDIGLQYIN 990 (1987)
Q Consensus 978 kak~wd~AlrLi~ 990 (1987)
-.+.+.+|.-++.
T Consensus 380 A~~~~kEA~~~An 392 (564)
T KOG1174|consen 380 AQKRFKEANALAN 392 (564)
T ss_pred hhchHHHHHHHHH
Confidence 7777777766653
No 336
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=86.14 E-value=0.72 Score=58.09 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.4
Q ss_pred hhccCCcEEEEcCCCCChhHHH--HHHHH
Q 000162 521 MILFPRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 521 AI~~~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++...+.++|+|++|+||||++ +++.+
T Consensus 145 l~~~~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 145 LLPAAGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444889999999999999997 44444
No 337
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=86.01 E-value=0.54 Score=53.16 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHHh
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
.+++.|+|.+||||||++ +++.+.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh
Confidence 457889999999999998 777774
No 338
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=86.00 E-value=4 Score=42.94 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
...-..+|..++..++++.|..+|.++-...- .+ ...+...+..|...|++++|.++|
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------------------~~----~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP------------------YN----SRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC------------------Cc----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999976433100 00 123445666666777777777776
Q ss_pred HHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 922 YDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
++++++... ....+...|.++...|++++|.+.|.+
T Consensus 75 ------~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 75 ------ALAAALDPD--DPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred ------HHHHhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344433111 123455667777777777777776643
No 339
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=85.97 E-value=0.58 Score=50.06 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.4
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++|+|.|||||||+.
T Consensus 1 ~I~i~G~~GsGKst~a 16 (147)
T cd02020 1 IIAIDGPAGSGKSTVA 16 (147)
T ss_pred CEEEECCCCCCHHHHH
Confidence 4689999999999995
No 340
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.97 E-value=0.53 Score=54.87 Aligned_cols=18 Identities=28% Similarity=0.735 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.++++|+|.||||||+.+
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999997
No 341
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=85.93 E-value=48 Score=41.97 Aligned_cols=18 Identities=11% Similarity=-0.033 Sum_probs=11.4
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 000162 1021 ALHYYQLNDKKSMMKFVK 1038 (1987)
Q Consensus 1021 A~~ylklgD~~~Am~~vk 1038 (1987)
+.+|+-+|+++.|++.++
T Consensus 242 gN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 242 GNCHIFLGNFELAIEHYK 259 (639)
T ss_pred chhhhhhcccHhHHHHHH
Confidence 445666677776666655
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.92 E-value=62 Score=44.00 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
..-+.+|.-++..++|+.|...|.++.+.+...+...+.+........ .-...-..++|+++..
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~I----------------v~Lmll~skka~~lLl 569 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQI----------------VLLMLLDSKKAIDLLL 569 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhHHHHHHHH----------------HHHHccchhhHHHHHh
Confidence 455669999999999999999999999987766666655543221100 0011112346666666
Q ss_pred HhCCHHHHHHHHHHhc
Q 000162 923 DLGEYERAGKIYEERC 938 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~ 938 (1987)
.-.++-...+++++..
T Consensus 570 dn~d~ip~a~Vveql~ 585 (846)
T KOG2066|consen 570 DNRDSISPSEVVEQLE 585 (846)
T ss_pred hccccCCHHHHHHHHh
Confidence 6666666666665543
No 343
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=85.86 E-value=5 Score=44.52 Aligned_cols=104 Identities=15% Similarity=0.064 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
...-|...|..+...++|+.|..+|.++-...- ++......+...+.+|...|++++|.++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-------------------~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-------------------DPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-------------------cchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345788899999999999999999998754210 0000112356778889999999999999
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHH
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCS 977 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~ 977 (1987)
| ++|..+.... ...+...|..+...| +.+.+.|+++.|+..+.
T Consensus 95 ~------~~Al~~~~~~--~~~~~~la~i~~~~~------~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 Y------FQALERNPFL--PQALNNMAVICHYRG------EQAIEQGDSEIAEAWFD 137 (168)
T ss_pred H------HHHHHhCcCc--HHHHHHHHHHHHHhh------HHHHHcccHHHHHHHHH
Confidence 8 5555542110 122333444443222 23445566655555443
No 344
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=85.80 E-value=0.61 Score=51.19 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++|+|.|||||||++
T Consensus 1 ~i~i~G~~GsGKSTla 16 (149)
T cd02027 1 VIWLTGLSGSGKSTIA 16 (149)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4789999999999997
No 345
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=85.80 E-value=0.64 Score=51.73 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=17.2
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++.|||-||+||||+. +.+.+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999997 44444
No 346
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=85.80 E-value=0.52 Score=59.92 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...++|+|+|||||||++ +.+.|
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 668999999999999998 55544
No 347
>PRK14738 gmk guanylate kinase; Provisional
Probab=85.79 E-value=0.45 Score=55.01 Aligned_cols=18 Identities=44% Similarity=0.691 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...+||+|+||+||||++
T Consensus 13 ~~~ivi~GpsG~GK~tl~ 30 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVL 30 (206)
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 457889999999999997
No 348
>PRK14526 adenylate kinase; Provisional
Probab=85.79 E-value=0.55 Score=54.69 Aligned_cols=15 Identities=47% Similarity=0.711 Sum_probs=14.1
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|+||+||||+.
T Consensus 3 i~l~G~pGsGKsT~a 17 (211)
T PRK14526 3 LVFLGPPGSGKGTIA 17 (211)
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999997
No 349
>PRK14527 adenylate kinase; Provisional
Probab=85.77 E-value=0.58 Score=53.23 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|.|+||+||||.+
T Consensus 6 ~~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQA 23 (191)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 568999999999999996
No 350
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=85.73 E-value=0.46 Score=58.75 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|.|+|||||||++
T Consensus 51 ~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CCcEEEECCCCccHHHHH
Confidence 468999999999999996
No 351
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.71 E-value=10 Score=49.44 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=37.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 905 ANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 905 AelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+-+|.-.|.|++|++|| +-|... +=.+..++.+.|..+....+..+|++.|.+|
T Consensus 437 GVLy~ls~efdraiDcf------~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCF------EAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHhcchHHHHHHHHH------HHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 34455566667777776 333322 1112467999999999999999999999998
No 352
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.71 E-value=0.56 Score=61.27 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++.++++|.|||||||++
T Consensus 43 ~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999997
No 353
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=85.70 E-value=0.56 Score=59.40 Aligned_cols=19 Identities=37% Similarity=0.830 Sum_probs=16.9
Q ss_pred EEcCCCCChhHHH--HHHHHh
Q 000162 530 ILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 530 ItGgPGTGKTTVI--Iikl~~ 548 (1987)
|.|+|||||||+| +++-|-
T Consensus 74 vvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 74 VVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred eecCCCCChhHHHHHHHHHHH
Confidence 7999999999999 877774
No 354
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=61 Score=43.88 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=55.5
Q ss_pred HHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHHc-CCHHHHHHHHHH
Q 000162 1034 MKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLTGDILLTADLLQKA-GNFKEACNLTLN 1104 (1987)
Q Consensus 1034 m~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~kA-g~fdeA~rL~l~ 1104 (1987)
++.+...+..++|.+|..+.+.+.|-..+|.+.|++.||++.|-++.+...-.+.+.+. +..+.+..+...
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~~rd~~~L~ev~~~~~~~~~~~~~~~~~ 822 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAEHRDGAELSEVLSKCTGAPDGATALKIQ 822 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHHhcChHHHHHHHHhcCCCCccchhhhhH
Confidence 44455677778899999999999999999999999999999999999877777777663 555555554333
No 355
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.62 E-value=0.66 Score=56.34 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+++.|+|++|+||||++
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 458889999999999998
No 356
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=85.57 E-value=5.3 Score=51.07 Aligned_cols=149 Identities=15% Similarity=0.083 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHh
Q 000162 913 KADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 913 ~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy 992 (1987)
.|..-..-|...+.|++|++++.-.....++.-.|......++..-+...|..+++.+|.- ++...
T Consensus 575 py~~iL~e~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVs--------------yin~i 640 (737)
T KOG1524|consen 575 PYPEILHEYLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVS--------------YINHI 640 (737)
T ss_pred ccHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHH--------------HHHHH
Confidence 3445556667788899999998765556778888888888899999999999999877652 22222
Q ss_pred hhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHH
Q 000162 993 KQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDA 1072 (1987)
Q Consensus 993 ~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA 1072 (1987)
+...+.+ ++-|...+-. ..+.+|...|.+.|....|+.+-..+-+|..|
T Consensus 641 K~ltske------------------~~mA~~~l~~-------------G~~~eAe~iLl~~gl~~qav~lni~m~nW~RA 689 (737)
T KOG1524|consen 641 KALTSKE------------------EQMAENSLML-------------GRMLEAETILLHGGLIEQAVGLNIRMHNWRRA 689 (737)
T ss_pred hccCcHH------------------HHHHHHHHHh-------------ccchhhhHHHHhcchHHHhhhhhhhhhhHHHH
Confidence 2211111 0111122222 33345677788899999999999999999999
Q ss_pred HHHHHHcCCHHHH----HHHHHHcCCHHHHHHHHHHHH
Q 000162 1073 ANIARLTGDILLT----ADLLQKAGNFKEACNLTLNYV 1106 (1987)
Q Consensus 1073 ~~iAkq~Gd~l~A----ae~L~kAg~fdeA~rL~l~~~ 1106 (1987)
.+++.++..++.- -+-|.++=.-+|--.+|+.|+
T Consensus 690 LEl~~K~K~~v~~Vl~yR~KyLk~~g~~EtdplyL~~~ 727 (737)
T KOG1524|consen 690 LELSQKHKELVPRVLQYRRKYLKALGREETDPLYLPLV 727 (737)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcccccCchhhhhh
Confidence 9999998755543 333455422234444555553
No 357
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=85.46 E-value=0.47 Score=58.24 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|+|||||||++
T Consensus 37 ~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAV 53 (337)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999997
No 358
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=85.41 E-value=0.56 Score=54.08 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.8
Q ss_pred cEEEEcCCCCChhHHH-HHH
Q 000162 527 STFILGRSGTGKTTIL-TMK 545 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI-Iik 545 (1987)
.+.||||||+||||+. ++.
T Consensus 3 ~igitG~igsGKst~~~~l~ 22 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLS 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 4689999999999997 443
No 359
>PLN02422 dephospho-CoA kinase
Probab=85.37 E-value=0.55 Score=55.44 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.9
Q ss_pred cEEEEcCCCCChhHHH-HHH
Q 000162 527 STFILGRSGTGKTTIL-TMK 545 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI-Iik 545 (1987)
.+.||||||+||||+. +++
T Consensus 3 ~igltG~igsGKstv~~~l~ 22 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK 22 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 4789999999999997 443
No 360
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.35 E-value=1.1 Score=56.48 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+++++.|+||+||||++
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 569999999999999998
No 361
>PTZ00088 adenylate kinase 1; Provisional
Probab=85.30 E-value=0.6 Score=55.06 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=14.3
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|+||+||||+.
T Consensus 9 Ivl~G~PGsGK~T~a 23 (229)
T PTZ00088 9 IVLFGAPGVGKGTFA 23 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999997
No 362
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.28 E-value=0.58 Score=60.41 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++++|+|||||||++
T Consensus 42 a~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 42 AYIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999997
No 363
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.27 E-value=0.6 Score=61.05 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++++|+|||||||++
T Consensus 37 ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTA 53 (504)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34599999999999997
No 364
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=85.24 E-value=0.66 Score=50.20 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++|+|.||+||||+.
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4789999999999996
No 365
>PRK00889 adenylylsulfate kinase; Provisional
Probab=85.21 E-value=0.63 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+++|+|.||+||||+. +.+.+
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999997 44444
No 366
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=85.20 E-value=0.52 Score=57.15 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+|++|.|||||||++
T Consensus 3 ~liil~G~pGSGKSTla 19 (300)
T PHA02530 3 KIILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35788999999999997
No 367
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=85.12 E-value=0.6 Score=54.41 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=17.5
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+-|.||+||||||++ |...|
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 4568999999999998 66666
No 368
>PRK06620 hypothetical protein; Validated
Probab=85.09 E-value=0.54 Score=54.86 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
++++|.|+||||||+.+
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67999999999999996
No 369
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=85.09 E-value=0.52 Score=51.94 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=13.5
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|.||+||||+.
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 478999999999996
No 370
>PRK06893 DNA replication initiation factor; Validated
Probab=85.06 E-value=0.54 Score=55.26 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++.++|.|+||||||+++
T Consensus 39 ~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 677899999999999997
No 371
>PRK13695 putative NTPase; Provisional
Probab=85.01 E-value=0.68 Score=51.80 Aligned_cols=15 Identities=47% Similarity=0.645 Sum_probs=14.2
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|||+||+||||++
T Consensus 3 i~ltG~~G~GKTTll 17 (174)
T PRK13695 3 IGITGPPGVGKTTLV 17 (174)
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999998
No 372
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=85.00 E-value=0.88 Score=57.13 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=23.3
Q ss_pred HHHHhhcc-CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 517 EQLEMILF-PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 517 eQk~AI~~-~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.-.+++.. .+.++|+|++|+||||++ +++.+
T Consensus 125 ~~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 125 AIIDAIAPQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred HHHHHHhccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445554 789999999999999997 54444
No 373
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=84.96 E-value=0.6 Score=55.39 Aligned_cols=18 Identities=50% Similarity=0.934 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+=.++|.|++||||||.+
T Consensus 13 ~fr~viIG~sGSGKT~li 30 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLI 30 (241)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 447999999999999998
No 374
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=84.88 E-value=0.66 Score=57.87 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..+++|+|+|||||||++ +.+.+
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999998 54444
No 375
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.76 E-value=3.2 Score=38.78 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcC-CHHHHHHHHHhc
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAG-QYKHAAEVYARG 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~ag-qy~kAAeLYeKa 966 (1987)
.+...|..|...|++++|+.+| ++|+++-.+ ....+...|.++...| +|.+|.+.|.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~------~~ai~~~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYF------EKAIELDPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHH------HHHHHHSTT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------HHHHHcCCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4667788888899999999998 777776211 1356888999999998 799998887764
No 376
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.72 E-value=0.67 Score=59.56 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=22.4
Q ss_pred cCHHHHHhhcc-----CCcEEEEcCCCCChhHHH
Q 000162 514 VTDEQLEMILF-----PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 514 l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI 542 (1987)
+++.|.+.+.. .|.+++||+-|+||||++
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL 275 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL 275 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 44555444443 899999999999999996
No 377
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.68 E-value=0.57 Score=55.28 Aligned_cols=18 Identities=22% Similarity=0.628 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.++++|+|+||||||+++
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 368999999999999997
No 378
>PRK04182 cytidylate kinase; Provisional
Probab=84.65 E-value=0.64 Score=51.59 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.||+||||+.
T Consensus 2 ~I~i~G~~GsGKstia 17 (180)
T PRK04182 2 IITISGPPGSGKTTVA 17 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999996
No 379
>PRK14574 hmsH outer membrane protein; Provisional
Probab=84.62 E-value=24 Score=49.21 Aligned_cols=175 Identities=13% Similarity=0.045 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCH------HHH--HH
Q 000162 903 EAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFF------SEC--LA 974 (1987)
Q Consensus 903 eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~------~kA--Ie 974 (1987)
+.+-+..+.|+++.|...| +++.+.... ......+.+..+-..|++.+|..+++++-+. ... +.
T Consensus 39 ~~aii~~r~Gd~~~Al~~L------~qaL~~~P~--~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYL------QEESKAGPL--QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred HHHHHHHhCCCHHHHHHHH------HHHHhhCcc--chhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 3344455667777777777 444433211 0011237788888889999999999998542 222 34
Q ss_pred HHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcC
Q 000162 975 VCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKS 1054 (1987)
Q Consensus 975 my~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~ 1054 (1987)
+|...|+|++|+++.++..+....+..+ +... +..|...++.++|++.+......+-...+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~-------------l~gL-a~~y~~~~q~~eAl~~l~~l~~~dp~~~~----- 171 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDL-------------ISGM-IMTQADAGRGGVVLKQATELAERDPTVQN----- 171 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHH-------------HHHH-HHHHhhcCCHHHHHHHHHHhcccCcchHH-----
Confidence 7778899999999987765544332111 1122 56778889999998887765444422111
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHc----CCHH----HHHHHHHHcCCHHHHHHHHHHH
Q 000162 1055 CFDELLVLEEEAGNFMDAANIARLT----GDIL----LTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1055 ~~dEaiell~kaG~f~EA~~iAkq~----Gd~l----~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
+.-.+.++...++..+|.+.+++. ++-. .-+..+.+.|-..-|.+++..|
T Consensus 172 -~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 172 -YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred -HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 111233333456665676666653 2211 1133344456666666665544
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=84.50 E-value=0.68 Score=57.55 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHHh
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
+.+++++|.||+||||++ +...+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 568999999999999998 555553
No 381
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=84.41 E-value=0.69 Score=55.89 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+.+||+|-||+||||.+ |.+.+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 46899999999999998 55554
No 382
>PTZ00301 uridine kinase; Provisional
Probab=84.32 E-value=0.71 Score=53.80 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.4
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
++-|+||||+||||++
T Consensus 5 iIgIaG~SgSGKTTla 20 (210)
T PTZ00301 5 VIGISGASGSGKSSLS 20 (210)
T ss_pred EEEEECCCcCCHHHHH
Confidence 5679999999999997
No 383
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=84.31 E-value=0.94 Score=60.97 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=32.5
Q ss_pred cccCcccCHHHHHhhcc--C-------CcEEEEcCCCCChhHHHHHHHH
Q 000162 508 LDLPFEVTDEQLEMILF--P-------RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 508 ~d~~I~l~~eQk~AI~~--~-------~~~iItGgPGTGKTTVIIikl~ 547 (1987)
..+||++++.|++||.. . -..+|.|..|||||.+.++-++
T Consensus 230 ~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il 278 (630)
T TIGR00643 230 ASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAML 278 (630)
T ss_pred HhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHH
Confidence 46789999999999987 1 1369999999999999854444
No 384
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=84.21 E-value=81 Score=38.83 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcC--------CHHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHH
Q 000162 943 LEKAGECFFLAGQYKHAAEVYARGN--------FFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQ 1014 (1987)
Q Consensus 943 l~~aAe~fE~agqy~kAAeLYeKaG--------d~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~ 1014 (1987)
+...|..+...|++.+|.+.|.++- -+.....+|.+.+.+++|.+++++..+....+... ...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~---------~~~ 187 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML---------RGH 187 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch---------hHH
Confidence 4467889999999999999999871 12333457788999999999987655432211010 000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 000162 1015 DFLQSCALHYYQLNDKKSMMKFVKAF 1040 (1987)
Q Consensus 1015 ~~le~cA~~ylklgD~~~Am~~vk~~ 1040 (1987)
.+ -..+..+...|+++.|...+...
T Consensus 188 ~~-~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 188 NW-WHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HH-HHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 12366788899999999888764
No 385
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=84.14 E-value=0.7 Score=50.90 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++|+|.|||||||++
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999996
No 386
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=84.09 E-value=1.1e+02 Score=41.09 Aligned_cols=120 Identities=13% Similarity=0.046 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccc---chhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHc-CCHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDT---YWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAI-GKADSA 917 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~---~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~-G~~dkA 917 (1987)
...|..-|+.+.+.+.++.|+..|..+=.. ....+.++..+.+. -...++-.+.+++|..+.-++ +-.-.-
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~-----hgt~Esl~Allqkav~~~pkae~lwlM~ 590 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKS-----HGTRESLEALLQKAVEQCPKAEILWLMY 590 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHhCCcchhHHHHH
Confidence 356888889999999999998888876442 22233333322211 011122233344444433222 122334
Q ss_pred HHHHHHhCCHHHHHHHHHHh----cC-hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 918 AKCFYDLGEYERAGKIYEER----CG-KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 918 Ak~y~kaGdyekA~eLy~e~----~~-~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++-+..+|+...|..++... .. +.++..+-+..-...+++.|-.++.++
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 55556666666665543321 11 344445555555567777777777766
No 387
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=84.08 E-value=11 Score=40.41 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhc-CChHHHHHHHHH
Q 000162 943 LEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRG-ELFDIGLQYINY 991 (1987)
Q Consensus 943 l~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~ka-k~wd~AlrLi~q 991 (1987)
...++...++.+.|++|+-+|.+.|++++|++++.+. ++.+.|.+++.+
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 5567777788899999999999999999999998887 788888888843
No 388
>PRK06696 uridine kinase; Validated
Probab=83.85 E-value=0.76 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+.++.|.|+|||||||++ |.+.+
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 458889999999999998 55444
No 389
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.78 E-value=48 Score=46.59 Aligned_cols=132 Identities=13% Similarity=0.047 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcC------
Q 000162 894 PLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGN------ 967 (1987)
Q Consensus 894 ~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaG------ 967 (1987)
+......+..|+..|...|++..|+..+..++++..+.++... .|..+...|++..+..+.....
T Consensus 337 ~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~---------~a~~l~~~g~~~~l~~~l~~lp~~~~~~ 407 (903)
T PRK04841 337 AQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQ---------HGWSLFNQGELSLLEECLNALPWEVLLE 407 (903)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH---------hHHHHHhcCChHHHHHHHHhCCHHHHhc
Confidence 4455667889999999999999999999999999988877543 4555555666666555554431
Q ss_pred CH---HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 968 FF---SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 968 d~---~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
+. .-..-++...++++++.+++.+..+..... .. ...... ........+..+...|++..|......
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~-~~-~~~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~ 477 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDR-NI-ELDGTL---QAEFNALRAQVAINDGDPEEAERLAEL 477 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhcccc-Cc-ccchhH---HHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 111224445667777777765433221110 00 000000 011111234556678898888877664
No 390
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=83.70 E-value=1 Score=53.37 Aligned_cols=26 Identities=19% Similarity=0.593 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHHhhh
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLFQNE 550 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~~~~ 550 (1987)
...++|.|.+|||||++| ++..|...
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 558999999999999998 66666433
No 391
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=83.63 E-value=1.4e+02 Score=38.07 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHH
Q 000162 915 DSAAKCFYDLGEYERAGKIYEE 936 (1987)
Q Consensus 915 dkAAk~y~kaGdyekA~eLy~e 936 (1987)
..|.++|.+.|+|..+..+..+
T Consensus 191 rLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 191 RLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHH
Confidence 5578888888888887776554
No 392
>PRK05439 pantothenate kinase; Provisional
Probab=83.62 E-value=0.75 Score=56.54 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
-++-|+|+||+||||++ +..++
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 36779999999999998 44444
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.60 E-value=11 Score=51.40 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 000162 896 EANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEE 936 (1987)
Q Consensus 896 ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e 936 (1987)
........|++.|...|..++|++....+||++.|+.+.++
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~ 385 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQ 385 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHh
Confidence 34567889999999999999999999999999999999876
No 394
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=83.60 E-value=0.63 Score=52.39 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|||||||||..
T Consensus 3 ~ili~G~~~sGKS~~a 18 (170)
T PRK05800 3 LILVTGGARSGKSRFA 18 (170)
T ss_pred EEEEECCCCccHHHHH
Confidence 5799999999999997
No 395
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=83.57 E-value=10 Score=48.75 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhhcc
Q 000162 943 LEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQHV 996 (1987)
Q Consensus 943 l~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~~~ 996 (1987)
-.+.|+...-.|...+|.-+..++|....|+.+-++.-+|+.|+++..+|++..
T Consensus 647 e~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K~~v 700 (737)
T KOG1524|consen 647 EEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHKELV 700 (737)
T ss_pred HHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHHHHH
Confidence 456777778889999999999999999999999999999999999998888753
No 396
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=83.38 E-value=0.66 Score=58.83 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCChhHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI 542 (1987)
.+..++|.|+||||||+++
T Consensus 164 ~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCceEEECCCCCChHHHH
Confidence 3667999999999999996
No 397
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=83.33 E-value=1 Score=43.92 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=16.9
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..+++|.+|+||||++ +...+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999998 55555
No 398
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=83.33 E-value=0.74 Score=47.48 Aligned_cols=15 Identities=47% Similarity=0.913 Sum_probs=14.0
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|.|.+|+||||.|
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 689999999999996
No 399
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=83.31 E-value=0.86 Score=51.62 Aligned_cols=16 Identities=44% Similarity=0.449 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|.|.||+||||++
T Consensus 5 ~IvieG~~GsGKsT~~ 20 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQA 20 (195)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5799999999999998
No 400
>PRK14737 gmk guanylate kinase; Provisional
Probab=83.23 E-value=0.77 Score=52.42 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.++||+|+||+||||++
T Consensus 4 ~~~ivl~GpsG~GK~tl~ 21 (186)
T PRK14737 4 PKLFIISSVAGGGKSTII 21 (186)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999997
No 401
>PRK04195 replication factor C large subunit; Provisional
Probab=83.21 E-value=0.77 Score=59.86 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|+|||||||++
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999997
No 402
>PHA02244 ATPase-like protein
Probab=83.21 E-value=1 Score=56.38 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=18.8
Q ss_pred hhccCCcEEEEcCCCCChhHHH
Q 000162 521 MILFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 521 AI~~~~~~iItGgPGTGKTTVI 542 (1987)
++....+++|+|+|||||||++
T Consensus 115 ~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHhcCCCEEEECCCCCCHHHHH
Confidence 4444778999999999999997
No 403
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=83.20 E-value=1.1 Score=55.86 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|++|+||||++
T Consensus 122 ~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 789999999999999997
No 404
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=83.16 E-value=0.77 Score=54.67 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=14.4
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+-||||+|||||||.
T Consensus 3 iIGlTGgIgSGKStVs 18 (244)
T PTZ00451 3 LIGLTGGIACGKSTVS 18 (244)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999997
No 405
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=83.15 E-value=0.69 Score=58.03 Aligned_cols=18 Identities=39% Similarity=0.802 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.-++|.|+|||||||++
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999996
No 406
>PLN02674 adenylate kinase
Probab=83.07 E-value=0.87 Score=54.25 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|.|+||+||||+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a 48 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQS 48 (244)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999997
No 407
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.00 E-value=6.5 Score=47.53 Aligned_cols=100 Identities=18% Similarity=0.102 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHH-HHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 841 SPEEWKSRGIKL-FYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 841 tpeeWkklA~~l-~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
....|+..|..+ ++.++|+.|+..|.+.=. .+- .++ -+-..+...|+.|...|+++.|+.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~--------~yP----------~s~-~a~~A~y~LG~~y~~~g~~~~A~~ 201 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVK--------KYP----------DST-YQPNANYWLGQLNYNKGKKDDAAY 201 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------HCc----------CCc-chHHHHHHHHHHHHHcCCHHHHHH
Confidence 557788888887 567999999999884322 110 000 011234577788888899999998
Q ss_pred HHHHhCCHHHHHHHHHHhcC-hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 920 CFYDLGEYERAGKIYEERCG-KPELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~-~~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
.| ++++..|..... ...+.+.|.++...|++++|.+.|.+
T Consensus 202 ~f------~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 202 YF------ASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HH------HHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87 666655543111 23344555555555555555555543
No 408
>PRK13946 shikimate kinase; Provisional
Probab=82.96 E-value=0.91 Score=51.45 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|.|||||||+.
T Consensus 10 ~~~I~l~G~~GsGKsti~ 27 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVG 27 (184)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999996
No 409
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=82.96 E-value=0.99 Score=50.09 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=17.9
Q ss_pred cEEEEcCCCCChhHHH--HHHHHh
Q 000162 527 STFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
++.|+|.+||||||++ +++.++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678999999999998 666653
No 410
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=82.94 E-value=0.82 Score=50.87 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=13.4
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
+.|.|.||||||||.
T Consensus 3 ItIsG~pGsG~TTva 17 (179)
T COG1102 3 ITISGLPGSGKTTVA 17 (179)
T ss_pred EEeccCCCCChhHHH
Confidence 568899999999996
No 411
>PRK06761 hypothetical protein; Provisional
Probab=82.93 E-value=0.83 Score=55.47 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.||+||||++
T Consensus 4 ~lIvI~G~~GsGKTTla 20 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTA 20 (282)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999997
No 412
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=82.90 E-value=13 Score=39.88 Aligned_cols=111 Identities=12% Similarity=0.048 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
|+.++..|..+-..|+.++|+.+|+++-...+. .......+-..+..|...|++++|..++
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-------------------~~~~~~a~i~lastlr~LG~~deA~~~L 61 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLS-------------------GADRRRALIQLASTLRNLGRYDEALALL 61 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------------chHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345778888999999999999999986442110 0011223445666777777787777777
Q ss_pred HHhCCHHHHHHHHHHh-cChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCHHHHHHHHH
Q 000162 922 YDLGEYERAGKIYEER-CGKPELEKAGECFFLAGQYKHAAEVYARG-----NFFSECLAVCS 977 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~-~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~~kAIemy~ 977 (1987)
.+. ..-+..- .....-.-.|-.+...|.+++|.+.+..+ ..|.+||..|.
T Consensus 62 ~~~------~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 62 EEA------LEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHH------HHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 2111000 00111222455666677777777766553 45555555554
No 413
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=82.81 E-value=0.84 Score=58.48 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++++|.|||||||++
T Consensus 194 ~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 789999999999999997
No 414
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.78 E-value=8 Score=50.29 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
.-|-..|..+...++.++|+-||-.|..
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 4699999999999999999999999866
No 415
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=82.77 E-value=0.74 Score=52.80 Aligned_cols=18 Identities=39% Similarity=0.750 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..+||.|+||+||||++
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 556777799999999998
No 416
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=82.76 E-value=0.8 Score=51.16 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
.+++|+|+||+||||++
T Consensus 2 ~ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLV 18 (180)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999997
No 417
>PRK05973 replicative DNA helicase; Provisional
Probab=82.70 E-value=0.9 Score=53.87 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHHH
Q 000162 525 PRSTFILGRSGTGKTTILT 543 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVII 543 (1987)
...++|.|+|||||||..+
T Consensus 64 Gsl~LIaG~PG~GKT~lal 82 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGL 82 (237)
T ss_pred CCEEEEEeCCCCCHHHHHH
Confidence 3488899999999999983
No 418
>PRK13947 shikimate kinase; Provisional
Probab=82.69 E-value=0.93 Score=50.24 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.|||||||+.
T Consensus 3 ~I~l~G~~GsGKst~a 18 (171)
T PRK13947 3 NIVLIGFMGTGKTTVG 18 (171)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4789999999999996
No 419
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=82.69 E-value=0.85 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+++++|.||||+||-|.. |+.-|
T Consensus 8 ~~IifVlGGPGsgKgTqC~kiv~ky 32 (195)
T KOG3079|consen 8 PPIIFVLGGPGSGKGTQCEKIVEKY 32 (195)
T ss_pred CCEEEEEcCCCCCcchHHHHHHHHc
Confidence 789999999999999997 66666
No 420
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=82.57 E-value=81 Score=39.33 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHh
Q 000162 846 KSRGIKLFYENNYEMATICFEKA 868 (1987)
Q Consensus 846 kklA~~l~~~g~ye~A~k~F~rA 868 (1987)
..+|..++-.++|..|+..|-.|
T Consensus 42 lElGk~lla~~Q~sDALt~yHaA 64 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAA 64 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 67899999999999999999887
No 421
>PRK00300 gmk guanylate kinase; Provisional
Probab=82.56 E-value=0.88 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.0
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..++|+|+||+||||++ +.+.+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999997 54444
No 422
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=82.55 E-value=95 Score=41.56 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=68.9
Q ss_pred hhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHH---HHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHH---
Q 000162 837 QVASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGR---SKATGLKAASDHIRSSNPLEANVILREAANIFEA--- 910 (1987)
Q Consensus 837 a~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~l---a~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~--- 910 (1987)
++++-...|-..|.-+...++.+.|...|++|-...+... +.....+ |+ .+.....++.|-++..+
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~w--ae------mElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAW--AE------MELRHENFEAALKLMRRATH 453 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHH--HH------HHHhhhhHHHHHHHHHhhhc
Confidence 3577788999999999999999999999999876433211 1111000 00 01111112222211111
Q ss_pred -----------cCC------------HHHHHHHHHHhCCHHHHHHHHHH-----hcChhHHHHHHHHHHHcCCHHHHHHH
Q 000162 911 -----------IGK------------ADSAAKCFYDLGEYERAGKIYEE-----RCGKPELEKAGECFFLAGQYKHAAEV 962 (1987)
Q Consensus 911 -----------~G~------------~dkAAk~y~kaGdyekA~eLy~e-----~~~~~ll~~aAe~fE~agqy~kAAeL 962 (1987)
.+. ...-+++-...|-++....+|.. ++..+.....|-.+++..-|++|-++
T Consensus 454 vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 454 VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 111 11122222333333333333332 34477788899999999999999999
Q ss_pred HHhc
Q 000162 963 YARG 966 (1987)
Q Consensus 963 YeKa 966 (1987)
|+++
T Consensus 534 YErg 537 (835)
T KOG2047|consen 534 YERG 537 (835)
T ss_pred HHcC
Confidence 9998
No 423
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=82.55 E-value=0.93 Score=53.09 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhHHH--HHHHH
Q 000162 528 TFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+-|.|+||+||||++ |..++
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 458999999999998 55554
No 424
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=82.51 E-value=0.89 Score=47.09 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=15.8
Q ss_pred EEEEcCCCCChhHHH--HHHHH
Q 000162 528 TFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+.|.|.||+||||.+ +.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999998 44444
No 425
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=82.47 E-value=1.4 Score=49.75 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=27.2
Q ss_pred ccCHHHHHhhccC--CcEEEEcCCCCChhHHH--HHHHH
Q 000162 513 EVTDEQLEMILFP--RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~~--~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..+.+++.+...+ -++-+||-||+||||++ +.+.+
T Consensus 9 ~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 9 SVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred ccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 5677888777773 37789999999999998 54444
No 426
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=82.44 E-value=7.5 Score=51.78 Aligned_cols=186 Identities=13% Similarity=0.060 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHH
Q 000162 896 EANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG----KPELEKAGECFFLAGQYKHAAEVYARGNFFSE 971 (1987)
Q Consensus 896 ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~----~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~k 971 (1987)
...|...+|..+||+.+..+.-+.||..+|+-.+|.++..+... .-+|.-.|+..-.--.|++|-++.-+..--
T Consensus 409 ~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-- 486 (777)
T KOG1128|consen 409 LSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-- 486 (777)
T ss_pred HHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH--
Confidence 34567889999999999999999999999999999888554222 233555566555555666666654332110
Q ss_pred HHHHH-----HhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcc--HH
Q 000162 972 CLAVC-----SRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHS--MD 1044 (1987)
Q Consensus 972 AIemy-----~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s--~d 1044 (1987)
+.+| ...++|.++.+..+. ....+... .+ .++ .+.-+.+++.+++.|++.+...-+ .+
T Consensus 487 -A~r~~~~~~~~~~~fs~~~~hle~---sl~~nplq---------~~-~wf-~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 487 -AQRSLALLILSNKDFSEADKHLER---SLEINPLQ---------LG-TWF-GLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred -HHHhhccccccchhHHHHHHHHHH---HhhcCccc---------hh-HHH-hccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 1222 223556655555522 11111111 00 111 234455667777777765553211 11
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHH--------HHHHHHHHcCCHHHHHHHHHHH
Q 000162 1045 LMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLTGDIL--------LTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1045 ~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l--------~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
.+..| .-....+.+.|.-.+|+...+++..+. -.+-...+-|.|++|.+++-.-
T Consensus 552 ~~eaW-------nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 552 NAEAW-------NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred chhhh-------hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 12222 224455677777788887777763222 1133334558888888874433
No 427
>PRK10689 transcription-repair coupling factor; Provisional
Probab=82.41 E-value=0.89 Score=64.76 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=46.3
Q ss_pred hhhHhHHHhhcccC------CChhhHhhhhhhccccccccCcccCHHHHHhhcc--C-------CcEEEEcCCCCChhHH
Q 000162 477 SNVTDSLLLMKFYP------LSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF--P-------RSTFILGRSGTGKTTI 541 (1987)
Q Consensus 477 ~~~~~~~~l~~~~~------~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~--~-------~~~iItGgPGTGKTTV 541 (1987)
.+|.+++.|..... ++. . .....+.+..+|+++|+.|++||.. . ...+|.|..|||||.|
T Consensus 563 ~~a~~l~~~~a~r~~~~~~~~~~---~--~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 563 DVAAELLDIYAQRAAKEGFAFKH---D--REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred HHHHHHHHHHHHHhhccCCCCCC---C--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHH
Confidence 45666666654433 332 1 1233446678899999999999997 2 4689999999999998
Q ss_pred HHHHHH
Q 000162 542 LTMKLF 547 (1987)
Q Consensus 542 IIikl~ 547 (1987)
++.-++
T Consensus 638 al~aa~ 643 (1147)
T PRK10689 638 AMRAAF 643 (1147)
T ss_pred HHHHHH
Confidence 854444
No 428
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=82.40 E-value=0.87 Score=49.34 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=14.4
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++|+|++|+||||++
T Consensus 1 ~i~i~GpsGsGKstl~ 16 (137)
T cd00071 1 LIVLSGPSGVGKSTLL 16 (137)
T ss_pred CEEEECCCCCCHHHHH
Confidence 4689999999999987
No 429
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=82.25 E-value=3.5 Score=40.41 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc--C--CH---HHHHHHHHhcCChHH
Q 000162 912 GKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG--N--FF---SECLAVCSRGELFDI 984 (1987)
Q Consensus 912 G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa--G--d~---~kAIemy~kak~wd~ 984 (1987)
|+++.|+..| +++.+..........+...|.++.+.|+|.+|.+++.+. + .. --...+|.+.++|++
T Consensus 3 ~~y~~Ai~~~------~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYY------EKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHH------HHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHH------HHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4556666655 344433221001234556899999999999999999652 1 11 112457788889998
Q ss_pred HHHHHHH
Q 000162 985 GLQYINY 991 (1987)
Q Consensus 985 AlrLi~q 991 (1987)
|++.+++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888753
No 430
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=82.17 E-value=17 Score=39.73 Aligned_cols=85 Identities=7% Similarity=-0.093 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHHH
Q 000162 902 REAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SECL 973 (1987)
Q Consensus 902 ~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kAI 973 (1987)
...+..+.+.|++++|+.+| .+|+++- -.....+...|..+...|+|++|...|.++ ++. -...
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~------~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDF------SWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHH------HHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 34566677788888888887 4454441 011356788999999999999999999998 222 2233
Q ss_pred HHHHhcCChHHHHHHHHHhhh
Q 000162 974 AVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 974 emy~kak~wd~AlrLi~qy~~ 994 (1987)
.++.+.|++++|....++-.+
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 466778888888887765433
No 431
>PRK13764 ATPase; Provisional
Probab=82.12 E-value=1.3 Score=59.01 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=21.1
Q ss_pred hhccCCcEEEEcCCCCChhHHH--HHHHH
Q 000162 521 MILFPRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 521 AI~~~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++...+.++|+|+|||||||++ ++..+
T Consensus 253 l~~~~~~ILIsG~TGSGKTTll~AL~~~i 281 (602)
T PRK13764 253 LEERAEGILIAGAPGAGKSTFAQALAEFY 281 (602)
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444677999999999999998 55444
No 432
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=82.10 E-value=0.97 Score=52.11 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=16.8
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++.|+|+||+||||++ |..++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 6679999999999997 44444
No 433
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.03 E-value=2.1 Score=34.28 Aligned_cols=27 Identities=41% Similarity=0.559 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKA 868 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rA 868 (1987)
|+-|..+|..++..|+|++|+++|.++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 467999999999999999999999986
No 434
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=82.00 E-value=0.82 Score=58.18 Aligned_cols=18 Identities=44% Similarity=0.852 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|.|+|||||||++
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 668999999999999996
No 435
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.88 E-value=12 Score=42.56 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccch---hHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYW---EGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADS 916 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~l---a~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dk 916 (1987)
+...-|..+|.++.+.|+++.|.++|.++.+.-. ..+.......+.+ ...+.+..+.. ...+
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~---------i~~~d~~~v~~------~i~k 98 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVA---------IFFGDWSHVEK------YIEK 98 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH---------HHhCCHHHHHH------HHHH
Confidence 3456788999999999999999999999877211 0111111111111 11122222222 2344
Q ss_pred HHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 917 AAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 917 AAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
|-.+..++|+|+.-.++- .-.|-+....++|.+||++|..+
T Consensus 99 a~~~~~~~~d~~~~nrlk---------~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 99 AESLIEKGGDWERRNRLK---------VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHhccchHHHHHHHH---------HHHHHHHHHhchHHHHHHHHHcc
Confidence 555555555566544431 12344555568888888888776
No 436
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=81.81 E-value=3.2 Score=38.37 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=33.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 904 AANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 904 AAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.|..|.+.|++++|+++| +++++... .....+...|.++...|++++|+++|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~------~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAF------EQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHCTHHHHHHHHH------HHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH------HHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555566666666665 33322210 01345778899999999999999888765
No 437
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=81.74 E-value=1 Score=61.17 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=33.5
Q ss_pred ccccCcccCHHHHHhhcc--C-------CcEEEEcCCCCChhHHHHHHHH
Q 000162 507 ELDLPFEVTDEQLEMILF--P-------RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 507 e~d~~I~l~~eQk~AI~~--~-------~~~iItGgPGTGKTTVIIikl~ 547 (1987)
...+||++++.|++||.. . ...+|.|..|||||.+.++-++
T Consensus 255 ~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il 304 (681)
T PRK10917 255 LASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAAL 304 (681)
T ss_pred HHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999987 2 2579999999999999854444
No 438
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.73 E-value=1.6 Score=51.48 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++-+++-|+||||||-++
T Consensus 211 pkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCceEEeCCCCCchhHHH
Confidence 456889999999999883
No 439
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=81.73 E-value=0.81 Score=54.86 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+|||||||..
T Consensus 36 gs~~lI~G~pGtGKT~l~ 53 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMV 53 (259)
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 458899999999999998
No 440
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=81.67 E-value=1 Score=53.73 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCChhHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI 542 (1987)
...+++|+|+|||||||..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~ 40 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFA 40 (260)
T ss_pred CCcEEEEEcCCCCcHHHHH
Confidence 3679999999999999998
No 441
>PF12846 AAA_10: AAA-like domain
Probab=81.59 E-value=0.99 Score=53.90 Aligned_cols=18 Identities=56% Similarity=0.944 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
|+.++|+|.+|+||||.+
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 578999999999999998
No 442
>PLN02459 probable adenylate kinase
Probab=81.50 E-value=1.1 Score=53.89 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=14.4
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+||+|+||+||||+.
T Consensus 31 ~ii~~G~PGsGK~T~a 46 (261)
T PLN02459 31 NWVFLGCPGVGKGTYA 46 (261)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999996
No 443
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=81.39 E-value=1.1 Score=51.84 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCChhHHHH
Q 000162 526 RSTFILGRSGTGKTTILT 543 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVII 543 (1987)
.++.|+|+|||||||.++
T Consensus 20 ~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999999983
No 444
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=81.28 E-value=1.1 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+.++++.|++|+||||++ +-..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 357899999999999998 44444
No 445
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=81.21 E-value=1.7 Score=49.26 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=29.1
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+.+-|++|+.. ...++|.+++|+|||.+.++-+.
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l 58 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPIL 58 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 378899999988 67899999999999988644444
No 446
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=81.18 E-value=1.2 Score=59.23 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.1
Q ss_pred CCceeeeeecccCCCCCeEEE
Q 000162 717 KQALVLTIVESKGLEFQDVLL 737 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL 737 (1987)
..+++||||||||+-++.|.+
T Consensus 738 ~~~~AmTIhKSQG~SL~kV~i 758 (818)
T PF02689_consen 738 SSAFAMTIHKSQGQSLDKVAI 758 (818)
T ss_pred eeeEEEEEeHhhccccceEEE
Confidence 457899999999999999988
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=81.11 E-value=1 Score=55.37 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.3
Q ss_pred hhccCCcEEEEcCCCCChhHHH
Q 000162 521 MILFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 521 AI~~~~~~iItGgPGTGKTTVI 542 (1987)
+|+....++|+|++|+||||.+
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHH
Confidence 4555789999999999999997
No 448
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=81.06 E-value=1.1 Score=52.24 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=20.4
Q ss_pred hhccCC-cEEEEcCCCCChhHHH--HHHHH
Q 000162 521 MILFPR-STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 521 AI~~~~-~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+++.. .++|.|+||+||||.+ |-++.
T Consensus 132 ly~~g~lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 132 LYQNGWLNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred HHhcCceeeEEecCCCCChHHHHHHHHHHh
Confidence 344433 4899999999999997 66665
No 449
>PRK08116 hypothetical protein; Validated
Probab=81.05 E-value=1.6 Score=52.82 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=15.1
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||||||.++
T Consensus 116 gl~l~G~~GtGKThLa 131 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA 131 (268)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5999999999999997
No 450
>PRK14529 adenylate kinase; Provisional
Probab=81.03 E-value=1.1 Score=52.56 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhHHH--HHHHH
Q 000162 528 TFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++|.|+||+||||+. |.+.|
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999997 44444
No 451
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.02 E-value=1.1 Score=58.29 Aligned_cols=18 Identities=50% Similarity=0.826 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+...+++|.|||||||++
T Consensus 35 ~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 35 PQSILLVGASGVGKTTCA 52 (491)
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999997
No 452
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=80.97 E-value=11 Score=39.64 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcC-----C---HHHH
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGN-----F---FSEC 972 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaG-----d---~~kA 972 (1987)
....+..|...|++++|.++| ++++.+.. .....+...|.++...|+|++|.++|.++- + +-..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~------~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLF------QLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHH------HHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 455666677778888888887 44444311 123567789999999999999999998871 1 1223
Q ss_pred HHHHHhcCChHHHHHHHHHhhhc
Q 000162 973 LAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy~~~ 995 (1987)
..+|...+++++|++..+...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 34777888899888888655443
No 453
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=80.92 E-value=1 Score=62.72 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=34.5
Q ss_pred cccccCcccCHHHHHhhcc--C-------CcEEEEcCCCCChhHHHHHHHH
Q 000162 506 RELDLPFEVTDEQLEMILF--P-------RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 506 ~e~d~~I~l~~eQk~AI~~--~-------~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+..+|+++|+.|++||.. . ...+|.|..|||||.|.+.-++
T Consensus 444 ~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l 494 (926)
T TIGR00580 444 FEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAF 494 (926)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHH
Confidence 4456789999999999987 2 3579999999999999855555
No 454
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=80.89 E-value=0.94 Score=59.26 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|.|+|||||||++
T Consensus 88 ~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 567999999999999997
No 455
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=80.78 E-value=1 Score=54.87 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCChhHHH-HH
Q 000162 526 RSTFILGRSGTGKTTIL-TM 544 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI-Ii 544 (1987)
..++|||.||+||||++ ++
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 47899999999999997 44
No 456
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=80.77 E-value=1.1 Score=51.02 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.7
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
+-||||.|||||||.
T Consensus 3 IglTG~igsGKStv~ 17 (180)
T PF01121_consen 3 IGLTGGIGSGKSTVS 17 (180)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCcCCHHHHH
Confidence 569999999999996
No 457
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.67 E-value=1.2 Score=57.28 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.+++|||+||.||||||
T Consensus 110 ~~iLLltGPsGcGKSTtv 127 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTV 127 (634)
T ss_pred ceEEEEeCCCCCCchhHH
Confidence 569999999999999997
No 458
>PRK13949 shikimate kinase; Provisional
Probab=80.64 E-value=1.2 Score=50.10 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.||+||||+.
T Consensus 3 ~I~liG~~GsGKstl~ 18 (169)
T PRK13949 3 RIFLVGYMGAGKTTLG 18 (169)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999996
No 459
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.60 E-value=24 Score=42.84 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHhc---C--hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHH--------HHHHh
Q 000162 912 GKADSAAKCFYDLGEYERAGKIYEERC---G--KPELEKAGECFFLAGQYKHAAEVYARGNFFSECL--------AVCSR 978 (1987)
Q Consensus 912 G~~dkAAk~y~kaGdyekA~eLy~e~~---~--~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAI--------emy~k 978 (1987)
|.++.-+.-.++-..|..|+++...-. . ..-+--.|-||...++|..||++|++.+...--. .-+.+
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 444444444455555666665543211 1 1235567888888899999999998875442111 12246
Q ss_pred cCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHH
Q 000162 979 GELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDE 1058 (1987)
Q Consensus 979 ak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dE 1058 (1987)
+..+..|++++.+..++. .+.+++.++ .+|..| ..+|+..+..++....+..+|.....
T Consensus 91 A~i~ADALrV~~~~~D~~----~L~~~~lqL---------qaAIkY-se~Dl~g~rsLveQlp~en~Ad~~in------- 149 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNP----ALHSRVLQL---------QAAIKY-SEGDLPGSRSLVEQLPSENEADGQIN------- 149 (459)
T ss_pred hcccHHHHHHHHHhcCCH----HHHHHHHHH---------HHHHhc-ccccCcchHHHHHhccCCCccchhcc-------
Confidence 677778888886554431 111121111 223333 34666666666655544333332211
Q ss_pred HHHHHHHhCCHHHHHHHHHHc
Q 000162 1059 LLVLEEEAGNFMDAANIARLT 1079 (1987)
Q Consensus 1059 aiell~kaG~f~EA~~iAkq~ 1079 (1987)
..-++-++|++++|.+-+..+
T Consensus 150 ~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred chheeeccccHHHHHHHHHHH
Confidence 123445778888876655543
No 460
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=80.60 E-value=0.93 Score=59.98 Aligned_cols=61 Identities=28% Similarity=0.322 Sum_probs=42.8
Q ss_pred cccCcccCHHHH--HhhccCCcEEEEcCCCCChhHHHHHHHHhhhhhhh----hhhccccCCccchhH
Q 000162 508 LDLPFEVTDEQL--EMILFPRSTFILGRSGTGKTTILTMKLFQNEKHHR----MAKEQFDGVNNSLTL 569 (1987)
Q Consensus 508 ~d~~I~l~~eQk--~AI~~~~~~iItGgPGTGKTTVIIikl~~~~~raa----~a~~~l~~~~~AaTI 569 (1987)
+++|| ++++|+ +||..++++||.|-.|+||||-+=-=+|+...... .-|.|+|.+.|.|.|
T Consensus 253 ~~LPI-~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 253 LDLPI-VAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred hcCch-hHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 56777 556666 56777999999999999999999333455432211 457778777777755
No 461
>PRK00625 shikimate kinase; Provisional
Probab=80.56 E-value=1 Score=50.98 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|-||+||||+.
T Consensus 2 ~I~LiG~pGsGKTT~~ 17 (173)
T PRK00625 2 QIFLCGLPTVGKTSFG 17 (173)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999995
No 462
>PRK15331 chaperone protein SicA; Provisional
Probab=80.53 E-value=13 Score=41.96 Aligned_cols=94 Identities=10% Similarity=0.070 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
+..+..|-.++.+|+|+.|.+.|.-. |. ++.. + ...+.-.|..+...+++++|+.+|.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L--------~~-~d~~---------n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFL--------CI-YDFY---------N----PDYTMGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH--------HH-hCcC---------c----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35588999999999999999999832 11 1111 0 0012233333444445666666663
Q ss_pred HhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 923 DLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
-+. .+ ..++..-.--+|+|+-..|+...|...|..+
T Consensus 96 ~A~------~l--~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 96 VAF------TL--LKNDYRPVFFTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred HHH------Hc--ccCCCCccchHHHHHHHhCCHHHHHHHHHHH
Confidence 222 11 1122233445677777777777777766655
No 463
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=80.43 E-value=1.3 Score=50.30 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||||||.++
T Consensus 47 ~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLA 64 (178)
T ss_dssp --EEEEEESTTSSHHHHH
T ss_pred CeEEEEEhhHhHHHHHHH
Confidence 567999999999999998
No 464
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.41 E-value=1.3 Score=58.46 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++++|.|||||||++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlA 55 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLG 55 (546)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 335789999999999997
No 465
>PRK13948 shikimate kinase; Provisional
Probab=80.41 E-value=0.93 Score=51.68 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|.||+||||+.
T Consensus 10 ~~~I~LiG~~GsGKSTvg 27 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIG 27 (182)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457899999999999995
No 466
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=80.39 E-value=1 Score=50.68 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=15.0
Q ss_pred cEEEEcCCCCChhHHHH
Q 000162 527 STFILGRSGTGKTTILT 543 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVII 543 (1987)
.++|+|||||||||.+.
T Consensus 1 ~~li~G~~~sGKS~~a~ 17 (169)
T cd00544 1 IILVTGGARSGKSRFAE 17 (169)
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47899999999999973
No 467
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=80.31 E-value=1.5 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=19.5
Q ss_pred cEEEEcCCCCChhHHH--HHHHHhhh
Q 000162 527 STFILGRSGTGKTTIL--TMKLFQNE 550 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~~~~ 550 (1987)
.+-|.|+||+||||+| +++.++.+
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~ 40 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDE 40 (202)
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHhh
Confidence 6778899999999999 67777544
No 468
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=80.25 E-value=1.3 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHHh
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
...+.|+|.||+||||++ +...+.
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 568899999999999998 555553
No 469
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=80.22 E-value=1.3 Score=49.08 Aligned_cols=17 Identities=41% Similarity=0.737 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.||+||||+.
T Consensus 3 ~~i~~~G~~GsGKst~~ 19 (171)
T PRK03731 3 QPLFLVGARGCGKTTVG 19 (171)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35789999999999996
No 470
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.22 E-value=1.2 Score=58.44 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+...+++|.|||||||++
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CeeEEEECCCCCCHHHHH
Confidence 456799999999999997
No 471
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.16 E-value=1.2 Score=61.04 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+...|++|+|||||||++
T Consensus 38 ~HAyLFtGPpGtGKTTLA 55 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLA 55 (944)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445689999999999997
No 472
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=80.15 E-value=1.3 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.5
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.++|.|.+|+||||++ +.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999998 55555
No 473
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=80.14 E-value=1.3 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...+.++|.||+||||++ +...+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 468889999999999998 44444
No 474
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=80.12 E-value=1.3 Score=50.38 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|.|+||+||||.+
T Consensus 2 riiilG~pGaGK~T~A 17 (178)
T COG0563 2 RILILGPPGAGKSTLA 17 (178)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999996
No 475
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=80.08 E-value=1.1 Score=52.66 Aligned_cols=18 Identities=44% Similarity=0.840 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|.|.|||||||.+
T Consensus 12 ~~~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTI 29 (220)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 667999999999999984
No 476
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.03 E-value=13 Score=45.69 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcC---CHHH------HHHHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 899 VILREAANIFEAIG---KADS------AAKCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYA 964 (1987)
Q Consensus 899 ~~y~eAAelYe~~G---~~dk------AAk~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYe 964 (1987)
..|.-|..+.+-.. +-++ -+.||..+|+|++|...|..+-. .++....|-|+--.|+|.+|..+-+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 34666666665332 2222 37899999999999999876322 3556778888888899999999999
Q ss_pred hcCCHHHHHHHH
Q 000162 965 RGNFFSECLAVC 976 (1987)
Q Consensus 965 KaGd~~kAIemy 976 (1987)
++.+..-++.+.
T Consensus 116 ka~k~pL~~RLl 127 (557)
T KOG3785|consen 116 KAPKTPLCIRLL 127 (557)
T ss_pred hCCCChHHHHHH
Confidence 999888887764
No 477
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.03 E-value=2 Score=54.48 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++.+++.|++|+||||++ +...+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999998 54444
No 478
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=79.99 E-value=1.4 Score=54.93 Aligned_cols=18 Identities=33% Similarity=0.636 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
-+.++|.|.|||||||++
T Consensus 25 ~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCeEEEEcCCCCCHHHHH
Confidence 367999999999999996
No 479
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=79.99 E-value=1.1 Score=54.76 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++++|.|||||||.+
T Consensus 43 ~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 456667999999999996
No 480
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=79.96 E-value=35 Score=39.46 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhcCC-----H----HHHHHHHHhcCC--hHHHHHHHHHhhhcccccchhhhhhHH
Q 000162 940 KPELEKAGECFFLAGQYKHAAEVYARGNF-----F----SECLAVCSRGEL--FDIGLQYINYWKQHVDTDVGLVRRSKE 1008 (1987)
Q Consensus 940 ~~ll~~aAe~fE~agqy~kAAeLYeKaGd-----~----~kAIemy~kak~--wd~AlrLi~qy~~~~e~e~~~~~ra~~ 1008 (1987)
...+...|..|...|++++|.+.|.++-. . .-|.-++...+. .++|.+++++..+....+..
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~------- 145 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT------- 145 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh-------
Confidence 35688899999999999999999999822 1 222223455555 48888888766554333211
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 1009 INKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 1009 a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
.+..-+..+.+.||++.|+..++.
T Consensus 146 -------al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 146 -------ALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112235566778888888876653
No 481
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=79.81 E-value=0.78 Score=64.11 Aligned_cols=30 Identities=43% Similarity=0.653 Sum_probs=25.9
Q ss_pred ccCHHHHHhhcc-CCcEEEEcCCCCChhHHH
Q 000162 513 EVTDEQLEMILF-PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 513 ~l~~eQk~AI~~-~~~~iItGgPGTGKTTVI 542 (1987)
+|++.-++.|.+ +|.++|.|..||||||||
T Consensus 14 Sf~~~d~~~i~F~sPlTLIvG~NG~GKTTiI 44 (1294)
T KOG0962|consen 14 SFDDKDRNTIEFFSPLTLIVGANGTGKTTII 44 (1294)
T ss_pred ccCCcccceeeecCCeeeEecCCCCCchhHH
Confidence 345666778888 999999999999999997
No 482
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=79.75 E-value=1.3 Score=49.21 Aligned_cols=17 Identities=47% Similarity=0.634 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
|.++|+|.+|+||||.+
T Consensus 1 p~~~l~G~~GsGKTtl~ 17 (158)
T cd03112 1 PVTVLTGFLGAGKTTLL 17 (158)
T ss_pred CEEEEEECCCCCHHHHH
Confidence 57899999999999997
No 483
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=79.73 E-value=0.58 Score=56.26 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=34.6
Q ss_pred CCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHH
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLS 64 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~ 64 (1987)
+|++|+|||+...++.+.-+.-.+ .+..++++|||+.| .| =...|.+.++|..+.
T Consensus 256 ~~~~i~IDE~QD~s~~Q~~il~~l~~~~~~~~~vGD~~Q--sI-----Y~frga~~~~~~~~~ 311 (315)
T PF00580_consen 256 RYDHILIDEFQDTSPLQLRILKKLFKNPENLFIVGDPNQ--SI-----YGFRGADPELFEEFK 311 (315)
T ss_dssp HSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG---------GGGGTB-THHHHHHH
T ss_pred hCCeEEeEccccCCHHHHHHHHHHHHhhceeEEeCCCCc--ce-----eecCCCCHHHHHHHH
Confidence 589999999999998876444222 23346999999999 22 234455666666543
No 484
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=79.64 E-value=1.3 Score=47.12 Aligned_cols=18 Identities=39% Similarity=0.663 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...+.|+|.+|+||||.+
T Consensus 11 g~~~~i~G~nGsGKStLl 28 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLL 28 (137)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CCEEEEEccCCCccccce
Confidence 458899999999999996
No 485
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=79.62 E-value=1.3 Score=55.04 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...++|+|+|||||||++ +.+.+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 568899999999999998 55554
No 486
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.61 E-value=1.6 Score=52.79 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.8
Q ss_pred HHhhcc-CCcEEEEcCCCCChhHHH--HHHHHh
Q 000162 519 LEMILF-PRSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 519 k~AI~~-~~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
++.+.. .|.++|||+-|+||||++ ++-.+.
T Consensus 118 ~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 118 RELAESPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred HHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 344555 899999999999999998 666663
No 487
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=79.60 E-value=1.3 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHHhh
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLFQN 549 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~~~ 549 (1987)
+..+-|||.||+||||.+ ++..++.
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999 7777643
No 488
>PTZ00424 helicase 45; Provisional
Probab=79.58 E-value=1.8 Score=54.71 Aligned_cols=35 Identities=26% Similarity=0.183 Sum_probs=29.3
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++++.|.+||.. ...+++.+++|||||++.++-+.
T Consensus 50 ~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l 87 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAAL 87 (401)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH
Confidence 589999999998 56889999999999998744443
No 489
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=79.56 E-value=1.1 Score=58.72 Aligned_cols=18 Identities=39% Similarity=0.768 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++-++|.|+||||||+++
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 567999999999999986
No 490
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=79.38 E-value=1.1 Score=51.41 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...+.|+|+|||||||..
T Consensus 12 g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 347899999999999998
No 491
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=79.35 E-value=1.3 Score=58.51 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.+++|+|.|||||||++
T Consensus 86 ~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999998
No 492
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=79.28 E-value=1.5 Score=51.02 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||||||+..
T Consensus 19 gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEeCCCCCcHHHH
Confidence 568999999999999998
No 493
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=79.28 E-value=1.8 Score=48.80 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.0
Q ss_pred ccCCcEEEEcCCCCChhHHH
Q 000162 523 LFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 523 ~~~~~~iItGgPGTGKTTVI 542 (1987)
..+.+++|+|-|||||++++
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLA 39 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHH
Confidence 33789999999999999997
No 494
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=79.21 E-value=1.2 Score=46.08 Aligned_cols=15 Identities=40% Similarity=0.800 Sum_probs=13.9
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|.|.||+||||++
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 579999999999997
No 495
>PRK12608 transcription termination factor Rho; Provisional
Probab=79.14 E-value=1.3 Score=55.71 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
..+|+|+|||||||++
T Consensus 135 R~LIvG~pGtGKTTLl 150 (380)
T PRK12608 135 RGLIVAPPRAGKTVLL 150 (380)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5699999999999998
No 496
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=79.10 E-value=1.5 Score=58.71 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCChhHHH--HHHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
....++++|+|||||||++ +.+.+
T Consensus 36 ~~~~~ll~G~pG~GKT~la~~la~~l 61 (608)
T TIGR00764 36 QKRNVLLIGEPGVGKSMLAKAMAELL 61 (608)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHc
Confidence 3668999999999999998 44444
No 497
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.97 E-value=2 Score=55.12 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+++++.|++|+||||++
T Consensus 221 ~~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTL 238 (424)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458899999999999998
No 498
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=78.96 E-value=1.3 Score=51.89 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
++.|||.||||||||.
T Consensus 2 iI~i~G~~gsGKstva 17 (227)
T PHA02575 2 LIAISGKKRSGKDTVA 17 (227)
T ss_pred EEEEeCCCCCCHHHHH
Confidence 4689999999999997
No 499
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=78.93 E-value=1.2 Score=57.31 Aligned_cols=18 Identities=39% Similarity=0.783 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.-++|.|+|||||||++
T Consensus 217 p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 556889999999999996
No 500
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.87 E-value=14 Score=50.14 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred chhcccccccCCcHHHHHHhhhhhHHh----------------ccChHHHHHhhh-cCCHHHHHHHHHHHHHhcCHHHHH
Q 000162 800 LWIWENMEEFSKPMFDYWKKRLLVQVR----------------QLDDSLAQAMQV-ASSPEEWKSRGIKLFYENNYEMAT 862 (1987)
Q Consensus 800 LvIve~~~~~s~Pm~~ywek~~Lvev~----------------~~de~la~~la~-~stpeeWkklA~~l~~~g~ye~A~ 862 (1987)
|-++.+..-..+.|..|.+|++.-++. ...=+.+...+. ...++-|+.+|+.++.+|+.+.|.
T Consensus 613 l~lI~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaE 692 (1202)
T KOG0292|consen 613 LHLIKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAE 692 (1202)
T ss_pred HHHHHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHH
Q ss_pred HHHHHhcc-----------cchhHHHHHhhhHHhhhhhhcCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHH
Q 000162 863 ICFEKAKD-----------TYWEGRSKATGLKAASDHIRSSNPLE-ANVILREAANIFEAIGKADSAAKCFYDLGEYERA 930 (1987)
Q Consensus 863 k~F~rAgd-----------~~la~la~A~~l~~aA~~l~s~~~~e-a~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA 930 (1987)
+||++... -...++.+-...++..+........+ +.+...+-.++++.+|+...|=......|.-++|
T Consensus 693 m~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~~~a 772 (1202)
T KOG0292|consen 693 MCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLEDQA 772 (1202)
T ss_pred HHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcHHHH
Q ss_pred HHHHHH
Q 000162 931 GKIYEE 936 (1987)
Q Consensus 931 ~eLy~e 936 (1987)
-++.++
T Consensus 773 e~l~ee 778 (1202)
T KOG0292|consen 773 EKLGEE 778 (1202)
T ss_pred HHHHHh
Done!