Query 000162
Match_columns 1987
No_of_seqs 689 out of 3034
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 6.7E-46 2.3E-50 483.1 18.2 265 2-277 365-638 (646)
2 2gk6_A Regulator of nonsense t 100.0 4.8E-41 1.6E-45 435.7 14.7 269 3-277 339-612 (624)
3 2wjy_A Regulator of nonsense t 100.0 2.6E-40 9.1E-45 436.9 17.6 268 3-277 515-788 (800)
4 2xzl_A ATP-dependent helicase 100.0 4.1E-40 1.4E-44 435.6 15.1 269 3-277 517-790 (802)
5 3e1s_A Exodeoxyribonuclease V, 99.9 4.1E-23 1.4E-27 265.1 0.9 284 472-806 153-541 (574)
6 1w36_D RECD, exodeoxyribonucle 99.7 7.6E-18 2.6E-22 218.0 2.3 72 472-548 113-189 (608)
7 3upu_A ATP-dependent DNA helic 99.6 2.8E-16 9.6E-21 197.1 12.1 62 513-576 25-108 (459)
8 3e1s_A Exodeoxyribonuclease V, 99.6 9.2E-16 3.1E-20 197.2 7.2 200 3-254 279-545 (574)
9 3lfu_A DNA helicase II; SF1 he 99.5 1.2E-14 4.3E-19 188.8 12.5 36 512-547 8-44 (647)
10 1pjr_A PCRA; DNA repair, DNA r 99.5 2.1E-14 7.2E-19 189.6 13.2 36 512-547 10-46 (724)
11 1uaa_A REP helicase, protein ( 99.5 6.3E-14 2.1E-18 183.6 12.1 60 720-805 553-612 (673)
12 3dmn_A Putative DNA helicase; 99.5 1.4E-14 4.7E-19 159.2 3.9 133 622-806 2-154 (174)
13 1w36_D RECD, exodeoxyribonucle 99.4 2.3E-13 7.8E-18 176.4 6.5 239 3-253 262-586 (608)
14 3vkw_A Replicase large subunit 99.3 1.6E-12 5.5E-17 160.7 10.6 199 3-268 234-434 (446)
15 2wjy_A Regulator of nonsense t 99.3 2.8E-12 9.7E-17 170.3 12.5 79 697-807 675-763 (800)
16 3upu_A ATP-dependent DNA helic 99.3 2E-12 6.7E-17 162.3 7.8 85 2-92 127-212 (459)
17 1xi4_A Clathrin heavy chain; a 99.3 3.4E-10 1.2E-14 153.2 28.9 233 833-1068 976-1249(1630)
18 2gk6_A Regulator of nonsense t 99.2 1.1E-11 3.7E-16 161.3 11.8 80 696-807 498-587 (624)
19 2xzl_A ATP-dependent helicase 99.2 1.2E-11 4E-16 164.6 8.9 79 697-807 677-765 (802)
20 3lfu_A DNA helicase II; SF1 he 99.1 6.4E-11 2.2E-15 154.0 10.8 148 3-179 213-363 (647)
21 4b3f_X DNA-binding protein smu 99.1 1E-10 3.6E-15 152.7 12.4 79 697-807 532-613 (646)
22 1xi4_A Clathrin heavy chain; a 99.1 6.9E-09 2.4E-13 140.7 26.5 251 839-1105 1102-1381(1630)
23 3dmn_A Putative DNA helicase; 99.0 5.3E-10 1.8E-14 122.7 7.6 144 74-250 2-154 (174)
24 1pjr_A PCRA; DNA repair, DNA r 98.9 2.8E-09 9.5E-14 141.0 9.4 151 3-181 216-369 (724)
25 1b89_A Protein (clathrin heavy 98.8 1.2E-08 4.2E-13 126.5 13.7 233 839-1105 29-308 (449)
26 1uaa_A REP helicase, protein ( 98.8 3.2E-09 1.1E-13 139.3 8.8 145 2-174 206-353 (673)
27 2xpi_A Anaphase-promoting comp 98.5 3.7E-05 1.3E-09 97.0 32.1 162 924-1104 285-466 (597)
28 3mkq_A Coatomer beta'-subunit; 98.5 2.3E-06 7.9E-11 112.4 21.2 141 915-1100 656-804 (814)
29 3ieg_A DNAJ homolog subfamily 98.5 2.3E-05 7.9E-10 90.9 26.2 251 839-1106 34-333 (359)
30 3mkq_A Coatomer beta'-subunit; 98.5 4.1E-06 1.4E-10 110.1 22.3 150 842-995 629-778 (814)
31 1w36_B RECB, exodeoxyribonucle 98.4 4E-07 1.4E-11 126.5 9.8 84 3-93 377-463 (1180)
32 3uq3_A Heat shock protein STI1 98.4 2E-05 6.9E-10 87.2 21.2 219 841-1107 4-235 (258)
33 2xpi_A Anaphase-promoting comp 98.4 4E-05 1.4E-09 96.7 26.7 29 841-869 199-227 (597)
34 1b89_A Protein (clathrin heavy 98.3 1.2E-05 4.1E-10 100.0 20.1 276 815-1105 33-338 (449)
35 2y4t_A DNAJ homolog subfamily 98.3 7.8E-05 2.7E-09 90.4 25.6 251 839-1106 57-356 (450)
36 3vkw_A Replicase large subunit 98.3 9.7E-07 3.3E-11 109.6 8.5 71 699-805 351-421 (446)
37 4a1s_A PINS, partner of inscut 98.3 0.00015 5.3E-09 86.8 27.2 191 900-1104 128-368 (411)
38 1qqe_A Vesicular transport pro 98.2 7.9E-05 2.7E-09 86.9 23.6 169 847-1044 42-229 (292)
39 1w3b_A UDP-N-acetylglucosamine 98.2 6.3E-05 2.2E-09 89.9 23.3 181 839-1039 64-262 (388)
40 3u4q_A ATP-dependent helicase/ 98.2 1.1E-06 3.7E-11 122.6 8.8 84 3-93 400-494 (1232)
41 3ro2_A PINS homolog, G-protein 98.2 0.0003 1E-08 80.2 27.5 156 942-1105 125-329 (338)
42 3sf4_A G-protein-signaling mod 98.2 0.00021 7.3E-09 84.6 27.3 192 901-1106 90-334 (406)
43 3ulq_A Response regulator aspa 98.2 0.0002 6.8E-09 86.0 26.4 226 845-1106 106-366 (383)
44 2gw1_A Mitochondrial precursor 98.1 0.00021 7.2E-09 87.7 25.3 31 839-869 36-66 (514)
45 3q15_A PSP28, response regulat 98.1 0.00058 2E-08 82.0 27.1 225 844-1105 103-362 (378)
46 3hym_B Cell division cycle pro 98.1 0.00018 6.3E-09 82.5 21.5 245 839-1103 19-294 (330)
47 3fp2_A TPR repeat-containing p 98.1 0.00027 9.3E-09 87.5 24.5 165 925-1108 216-407 (537)
48 2y4t_A DNAJ homolog subfamily 98.1 0.00077 2.6E-08 81.6 27.6 220 839-1079 91-355 (450)
49 1qqe_A Vesicular transport pro 98.0 0.00059 2E-08 79.4 25.6 166 894-1105 33-225 (292)
50 3ieg_A DNAJ homolog subfamily 98.0 0.0012 4E-08 76.5 27.2 226 839-1079 68-332 (359)
51 1w36_B RECB, exodeoxyribonucle 98.0 7.5E-07 2.6E-11 123.8 0.1 83 717-803 734-816 (1180)
52 2ifu_A Gamma-SNAP; membrane fu 98.0 0.00054 1.8E-08 80.4 23.6 94 853-964 2-100 (307)
53 1w3b_A UDP-N-acetylglucosamine 98.0 0.00057 2E-08 81.6 24.0 240 839-1103 30-329 (388)
54 4eqf_A PEX5-related protein; a 98.0 0.00023 7.9E-09 84.1 20.2 218 843-1107 66-309 (365)
55 3fp2_A TPR repeat-containing p 98.0 0.00032 1.1E-08 86.9 22.2 127 898-1038 215-368 (537)
56 3mkq_B Coatomer subunit alpha; 98.0 0.00028 9.7E-09 77.5 19.0 133 918-1095 12-144 (177)
57 3u4q_A ATP-dependent helicase/ 97.9 1.6E-06 5.6E-11 120.9 0.9 90 717-806 786-884 (1232)
58 1ouv_A Conserved hypothetical 97.9 0.0012 4E-08 75.1 24.4 118 840-991 4-139 (273)
59 2gw1_A Mitochondrial precursor 97.9 0.00064 2.2E-08 83.4 23.7 77 918-994 244-332 (514)
60 3cv0_A Peroxisome targeting si 97.9 0.00082 2.8E-08 77.0 22.7 215 842-1105 21-266 (327)
61 3nf1_A KLC 1, kinesin light ch 97.9 0.0014 4.9E-08 74.4 24.4 238 841-1104 26-303 (311)
62 1xnf_A Lipoprotein NLPI; TPR, 97.9 0.00056 1.9E-08 76.7 20.2 216 841-1102 42-269 (275)
63 4a1s_A PINS, partner of inscut 97.9 0.0019 6.3E-08 77.4 25.7 226 843-1078 87-368 (411)
64 3ulq_A Response regulator aspa 97.9 0.0025 8.4E-08 76.5 26.8 201 842-1078 143-364 (383)
65 2ifu_A Gamma-SNAP; membrane fu 97.8 0.00099 3.4E-08 78.2 22.6 34 897-936 75-108 (307)
66 3ro2_A PINS homolog, G-protein 97.8 0.0031 1.1E-07 71.7 25.2 226 843-1078 44-328 (338)
67 1fch_A Peroxisomal targeting s 97.8 0.0011 3.7E-08 77.9 21.8 30 840-869 96-125 (368)
68 3sf4_A G-protein-signaling mod 97.8 0.0027 9.2E-08 75.1 25.0 270 843-1136 48-382 (406)
69 2ho1_A Type 4 fimbrial biogene 97.8 0.00093 3.2E-08 74.3 19.6 154 842-1039 37-200 (252)
70 2xm6_A Protein corresponding t 97.8 0.0094 3.2E-07 74.3 30.8 31 840-870 109-143 (490)
71 3mkq_B Coatomer subunit alpha; 97.7 0.00062 2.1E-08 74.9 17.0 96 899-994 35-130 (177)
72 4eqf_A PEX5-related protein; a 97.6 0.0015 5.1E-08 77.2 19.8 32 839-870 96-127 (365)
73 3u4t_A TPR repeat-containing p 97.6 0.0017 5.7E-08 73.0 19.0 85 901-994 77-170 (272)
74 3q15_A PSP28, response regulat 97.6 0.0038 1.3E-07 74.9 23.0 200 843-1078 142-361 (378)
75 3vtx_A MAMA; tetratricopeptide 97.6 0.0026 9E-08 67.6 18.9 156 839-1038 2-165 (184)
76 3cv0_A Peroxisome targeting si 97.6 0.0015 5.2E-08 74.8 17.9 32 839-870 52-83 (327)
77 3mkr_A Coatomer subunit epsilo 97.5 0.0097 3.3E-07 69.6 24.5 21 847-867 39-59 (291)
78 2xm6_A Protein corresponding t 97.5 0.049 1.7E-06 67.8 32.2 150 838-991 35-212 (490)
79 2q7f_A YRRB protein; TPR, prot 97.5 0.00082 2.8E-08 73.8 14.2 155 840-1038 21-183 (243)
80 3hym_B Cell division cycle pro 97.5 0.0018 6E-08 74.3 17.3 197 841-1079 89-296 (330)
81 3uq3_A Heat shock protein STI1 97.5 0.001 3.6E-08 73.3 14.3 170 840-1038 36-231 (258)
82 2pl2_A Hypothetical conserved 97.5 0.0017 5.9E-08 72.1 16.1 154 841-1039 4-176 (217)
83 2vq2_A PILW, putative fimbrial 97.5 0.0071 2.4E-07 65.2 20.5 121 841-991 7-138 (225)
84 2ho1_A Type 4 fimbrial biogene 97.4 0.0082 2.8E-07 66.6 20.9 188 893-1105 32-235 (252)
85 3edt_B KLC 2, kinesin light ch 97.4 0.0086 3E-07 66.6 20.6 161 854-1040 13-195 (283)
86 3nf1_A KLC 1, kinesin light ch 97.3 0.01 3.6E-07 67.2 21.0 170 898-1079 27-221 (311)
87 1ouv_A Conserved hypothetical 97.3 0.013 4.6E-07 66.3 21.4 150 839-1038 35-210 (273)
88 3edt_B KLC 2, kinesin light ch 97.3 0.0072 2.5E-07 67.2 18.6 130 842-991 43-194 (283)
89 2yhc_A BAMD, UPF0169 lipoprote 97.2 0.0091 3.1E-07 66.5 19.0 89 840-953 2-91 (225)
90 3vtx_A MAMA; tetratricopeptide 97.2 0.0086 3E-07 63.6 17.9 118 900-1039 7-132 (184)
91 1fch_A Peroxisomal targeting s 97.2 0.0046 1.6E-07 72.5 17.1 172 918-1106 105-312 (368)
92 1hz4_A MALT regulatory protein 97.2 0.057 1.9E-06 64.0 25.6 128 943-1078 138-278 (373)
93 2pl2_A Hypothetical conserved 97.1 0.0048 1.6E-07 68.6 14.2 174 901-1102 8-208 (217)
94 2q7f_A YRRB protein; TPR, prot 97.1 0.01 3.5E-07 65.0 16.6 156 840-1039 55-218 (243)
95 3as5_A MAMA; tetratricopeptide 97.0 0.018 6.3E-07 59.6 17.4 152 843-1038 9-168 (186)
96 4gcn_A Protein STI-1; structur 97.0 0.0048 1.6E-07 63.0 12.5 95 843-965 9-108 (127)
97 1xnf_A Lipoprotein NLPI; TPR, 97.0 0.056 1.9E-06 60.3 22.2 207 853-1106 16-242 (275)
98 3qky_A Outer membrane assembly 97.0 0.013 4.5E-07 66.2 17.2 131 839-994 12-176 (261)
99 3mkr_A Coatomer subunit epsilo 97.0 0.025 8.6E-07 66.1 19.8 74 1021-1101 207-287 (291)
100 4gyw_A UDP-N-acetylglucosamine 96.9 0.0075 2.6E-07 79.9 16.8 122 841-992 8-137 (723)
101 2vq2_A PILW, putative fimbrial 96.9 0.052 1.8E-06 58.3 20.6 179 900-1103 10-206 (225)
102 4gco_A Protein STI-1; structur 96.8 0.0071 2.4E-07 61.8 12.1 94 843-966 14-107 (126)
103 4i17_A Hypothetical protein; T 96.8 0.031 1E-06 61.6 17.7 125 839-992 4-143 (228)
104 3gw4_A Uncharacterized protein 96.8 0.077 2.6E-06 56.5 20.2 59 901-965 29-91 (203)
105 4abn_A Tetratricopeptide repea 96.7 0.0052 1.8E-07 77.0 12.2 159 839-1039 99-283 (474)
106 3ro3_A PINS homolog, G-protein 96.7 0.12 4.2E-06 51.8 20.3 99 843-963 10-112 (164)
107 4g1t_A Interferon-induced prot 96.7 0.041 1.4E-06 67.1 19.4 104 844-966 53-164 (472)
108 4b4t_Q 26S proteasome regulato 96.6 0.015 5.3E-07 70.0 14.8 181 840-1039 2-200 (434)
109 1w36_C RECC, exodeoxyribonucle 96.5 0.00034 1.2E-08 96.9 -1.1 71 717-804 657-731 (1122)
110 3u4t_A TPR repeat-containing p 96.5 0.092 3.2E-06 58.6 18.8 81 915-995 41-137 (272)
111 2qfc_A PLCR protein; TPR, HTH, 96.4 0.074 2.5E-06 61.5 18.5 103 841-965 74-180 (293)
112 3gyz_A Chaperone protein IPGC; 96.4 0.021 7.1E-07 60.8 12.3 96 841-966 35-130 (151)
113 3ro3_A PINS homolog, G-protein 96.3 0.48 1.6E-05 47.4 21.6 61 897-963 8-72 (164)
114 3urz_A Uncharacterized protein 96.3 0.067 2.3E-06 58.8 16.3 113 840-966 2-114 (208)
115 1hz4_A MALT regulatory protein 96.3 0.6 2E-05 55.1 25.5 185 845-1039 56-278 (373)
116 4i17_A Hypothetical protein; T 96.3 0.15 5.1E-06 56.0 18.9 127 900-1040 9-143 (228)
117 2ond_A Cleavage stimulation fa 96.3 0.089 3E-06 61.3 17.9 99 839-966 47-160 (308)
118 3as5_A MAMA; tetratricopeptide 96.2 0.061 2.1E-06 55.6 14.6 85 899-991 9-101 (186)
119 3upv_A Heat shock protein STI1 96.2 0.034 1.2E-06 55.4 12.1 95 842-966 4-98 (126)
120 4gyw_A UDP-N-acetylglucosamine 96.2 0.03 1E-06 74.2 14.7 60 899-966 10-69 (723)
121 3gw4_A Uncharacterized protein 96.1 0.15 5.3E-06 54.1 17.6 104 841-966 25-133 (203)
122 1a17_A Serine/threonine protei 96.1 0.057 2E-06 55.4 13.3 96 841-966 12-107 (166)
123 2ond_A Cleavage stimulation fa 96.0 0.24 8.1E-06 57.7 20.1 164 915-1104 81-266 (308)
124 2hr2_A Hypothetical protein; a 96.0 0.054 1.9E-06 58.7 13.3 109 841-965 10-127 (159)
125 4abn_A Tetratricopeptide repea 96.0 0.039 1.3E-06 69.1 14.0 178 900-1101 104-314 (474)
126 3u3w_A Transcriptional activat 95.9 0.14 4.7E-06 59.2 16.8 27 844-870 77-103 (293)
127 3rjv_A Putative SEL1 repeat pr 95.8 0.31 1.1E-05 53.8 18.9 124 838-966 14-155 (212)
128 1hh8_A P67PHOX, NCF-2, neutrop 95.8 0.099 3.4E-06 56.5 14.6 117 844-993 8-148 (213)
129 3sz7_A HSC70 cochaperone (SGT) 95.8 0.054 1.8E-06 56.8 12.1 96 841-966 10-105 (164)
130 3rkv_A Putative peptidylprolyl 95.8 0.064 2.2E-06 56.1 12.3 112 841-966 10-123 (162)
131 2vgx_A Chaperone SYCD; alterna 95.7 0.066 2.2E-06 56.0 12.2 96 841-966 20-115 (148)
132 2xcb_A PCRH, regulatory protei 95.7 0.069 2.4E-06 54.8 12.1 95 842-966 18-112 (142)
133 1elr_A TPR2A-domain of HOP; HO 95.7 0.096 3.3E-06 51.0 12.6 97 842-966 4-105 (131)
134 3q49_B STIP1 homology and U bo 95.7 0.064 2.2E-06 53.6 11.5 98 839-966 6-103 (137)
135 2fo7_A Synthetic consensus TPR 95.7 0.1 3.5E-06 50.6 12.6 116 844-989 3-126 (136)
136 2lni_A Stress-induced-phosphop 95.6 0.043 1.5E-06 54.0 9.8 97 839-965 13-109 (133)
137 2dba_A Smooth muscle cell asso 95.6 0.13 4.6E-06 51.5 13.6 101 839-966 25-125 (148)
138 1elw_A TPR1-domain of HOP; HOP 95.4 0.082 2.8E-06 50.4 10.5 96 841-966 3-98 (118)
139 2h6f_A Protein farnesyltransfe 95.2 0.21 7.3E-06 61.0 16.2 23 845-867 100-122 (382)
140 4ga2_A E3 SUMO-protein ligase 95.2 0.061 2.1E-06 56.2 9.8 89 848-966 3-91 (150)
141 1p5q_A FKBP52, FK506-binding p 95.1 0.089 3E-06 62.8 11.8 111 841-966 146-256 (336)
142 2yhc_A BAMD, UPF0169 lipoprote 95.0 1.1 3.9E-05 49.4 19.9 59 902-966 8-67 (225)
143 3qky_A Outer membrane assembly 94.9 0.13 4.4E-06 58.0 11.9 29 842-870 52-80 (261)
144 1kt0_A FKBP51, 51 kDa FK506-bi 94.8 0.13 4.5E-06 64.1 12.8 111 841-966 267-377 (457)
145 2vsy_A XCC0866; transferase, g 94.8 0.18 6E-06 64.1 14.1 97 840-966 21-117 (568)
146 1hh8_A P67PHOX, NCF-2, neutrop 94.7 0.15 5E-06 55.1 11.4 100 839-966 34-147 (213)
147 3u4q_B ATP-dependent helicase/ 94.7 0.0082 2.8E-07 83.7 1.9 77 717-803 586-668 (1166)
148 2ooe_A Cleavage stimulation fa 94.7 0.48 1.6E-05 59.5 17.7 191 839-1078 269-488 (530)
149 2vyi_A SGTA protein; chaperone 94.7 0.2 6.8E-06 48.6 11.2 96 841-966 11-106 (131)
150 2qfc_A PLCR protein; TPR, HTH, 94.7 0.34 1.2E-05 55.8 15.1 99 846-966 119-222 (293)
151 1hxi_A PEX5, peroxisome target 94.6 0.13 4.5E-06 51.8 10.0 94 843-966 18-111 (121)
152 3ec2_A DNA replication protein 94.6 0.018 6.1E-07 62.4 3.7 23 525-547 38-62 (180)
153 2xev_A YBGF; tetratricopeptide 94.6 0.13 4.5E-06 50.7 9.8 99 843-966 3-102 (129)
154 4ga2_A E3 SUMO-protein ligase 94.5 0.089 3.1E-06 55.0 8.8 92 842-963 31-122 (150)
155 2fo7_A Synthetic consensus TPR 94.5 0.7 2.4E-05 44.5 14.7 116 901-1038 4-127 (136)
156 1na0_A Designed protein CTPR3; 94.5 0.21 7.1E-06 48.0 10.8 95 841-965 8-102 (125)
157 2kck_A TPR repeat; tetratricop 94.4 0.042 1.4E-06 52.1 5.4 98 841-966 5-103 (112)
158 4g1t_A Interferon-induced prot 94.3 0.21 7.2E-06 60.8 12.9 61 900-966 53-120 (472)
159 3n71_A Histone lysine methyltr 94.3 0.12 4.2E-06 65.5 10.9 99 848-966 315-419 (490)
160 1ihg_A Cyclophilin 40; ppiase 94.3 0.21 7.1E-06 60.7 12.6 111 842-966 223-333 (370)
161 2h6f_A Protein farnesyltransfe 94.2 0.33 1.1E-05 59.4 14.1 98 839-966 128-226 (382)
162 2fbn_A 70 kDa peptidylprolyl i 94.1 0.34 1.1E-05 52.3 12.6 110 842-966 38-148 (198)
163 3u3w_A Transcriptional activat 94.0 0.55 1.9E-05 54.1 14.9 100 845-966 117-222 (293)
164 3qww_A SET and MYND domain-con 94.0 0.14 4.8E-06 63.9 10.4 93 854-966 310-408 (433)
165 1a17_A Serine/threonine protei 93.9 0.55 1.9E-05 47.9 13.1 88 899-994 14-109 (166)
166 2pzi_A Probable serine/threoni 93.8 0.35 1.2E-05 63.4 14.3 92 853-966 402-493 (681)
167 3lvg_A Clathrin heavy chain 1; 93.7 4.9E-05 1.7E-09 93.7 -20.4 224 839-1077 51-328 (624)
168 4gco_A Protein STI-1; structur 93.7 0.51 1.7E-05 47.9 12.3 94 892-994 8-109 (126)
169 4b4t_Q 26S proteasome regulato 93.5 1.1 3.9E-05 53.6 17.0 26 845-870 58-83 (434)
170 3qwp_A SET and MYND domain-con 93.5 0.26 9E-06 61.3 11.6 96 850-965 295-396 (429)
171 3te6_A Regulatory protein SIR3 93.4 0.031 1.1E-06 67.0 2.9 23 525-547 45-69 (318)
172 2c2l_A CHIP, carboxy terminus 93.3 0.25 8.7E-06 57.1 10.4 96 841-966 3-98 (281)
173 3t61_A Gluconokinase; PSI-biol 93.2 0.042 1.4E-06 60.6 3.5 30 513-542 6-35 (202)
174 3kb2_A SPBC2 prophage-derived 93.2 0.038 1.3E-06 58.6 3.0 16 527-542 3-18 (173)
175 1p5q_A FKBP52, FK506-binding p 93.0 0.7 2.4E-05 55.0 13.8 90 900-995 149-259 (336)
176 2pzi_A Probable serine/threoni 93.0 0.34 1.2E-05 63.5 12.1 123 839-992 430-560 (681)
177 3gyz_A Chaperone protein IPGC; 92.9 0.93 3.2E-05 48.0 13.3 94 892-994 31-132 (151)
178 2e2e_A Formate-dependent nitri 92.9 0.39 1.3E-05 50.5 10.3 98 839-966 41-141 (177)
179 2if4_A ATFKBP42; FKBP-like, al 92.9 0.15 5E-06 61.0 7.7 113 842-968 179-292 (338)
180 2w58_A DNAI, primosome compone 92.8 0.063 2.1E-06 59.1 4.1 17 526-542 55-71 (202)
181 3ma5_A Tetratricopeptide repea 92.8 0.51 1.7E-05 45.6 10.2 86 840-953 5-90 (100)
182 1jbk_A CLPB protein; beta barr 92.8 0.052 1.8E-06 57.8 3.3 18 525-542 43-60 (195)
183 3rkv_A Putative peptidylprolyl 92.8 1.1 3.7E-05 46.6 13.4 92 898-995 11-126 (162)
184 2vsy_A XCC0866; transferase, g 92.8 0.49 1.7E-05 60.1 12.8 85 901-993 26-118 (568)
185 3qou_A Protein YBBN; thioredox 92.8 2.2 7.4E-05 49.3 17.3 59 901-967 120-178 (287)
186 4g26_A Pentatricopeptide repea 92.7 0.56 1.9E-05 59.5 13.1 106 956-1078 86-200 (501)
187 3qou_A Protein YBBN; thioredox 92.6 0.56 1.9E-05 54.4 11.9 29 840-868 115-143 (287)
188 4gcn_A Protein STI-1; structur 92.5 0.53 1.8E-05 47.7 10.3 60 899-966 9-68 (127)
189 3upv_A Heat shock protein STI1 92.5 0.97 3.3E-05 44.6 12.1 86 900-993 6-99 (126)
190 3n70_A Transport activator; si 92.5 0.07 2.4E-06 56.1 3.8 19 524-542 23-41 (145)
191 3n71_A Histone lysine methyltr 92.4 0.33 1.1E-05 61.5 10.4 103 844-966 353-461 (490)
192 3mv2_B Coatomer subunit epsilo 92.4 6.2 0.00021 47.1 20.7 130 840-994 98-239 (310)
193 2r5s_A Uncharacterized protein 92.4 0.62 2.1E-05 49.4 11.0 32 839-870 37-68 (176)
194 1kt0_A FKBP51, 51 kDa FK506-bi 92.3 1.2 4.1E-05 55.4 15.1 90 900-995 270-380 (457)
195 2z0h_A DTMP kinase, thymidylat 92.2 0.063 2.1E-06 58.5 3.1 16 527-542 2-17 (197)
196 3u4q_B ATP-dependent helicase/ 92.2 0.17 6E-06 70.5 8.2 154 5-185 203-365 (1166)
197 3co5_A Putative two-component 92.1 0.064 2.2E-06 56.3 2.9 20 523-542 25-44 (143)
198 4g26_A Pentatricopeptide repea 92.1 0.92 3.1E-05 57.5 14.0 149 840-994 23-203 (501)
199 1elw_A TPR1-domain of HOP; HOP 92.0 1.1 3.7E-05 42.5 11.3 88 900-995 6-101 (118)
200 3sz7_A HSC70 cochaperone (SGT) 92.0 0.64 2.2E-05 48.5 10.4 88 899-994 12-107 (164)
201 1y63_A LMAJ004144AAA protein; 91.9 0.07 2.4E-06 58.2 3.1 18 525-542 10-27 (184)
202 1zuh_A Shikimate kinase; alpha 91.9 0.067 2.3E-06 57.1 2.7 17 526-542 8-24 (168)
203 2iyv_A Shikimate kinase, SK; t 91.8 0.084 2.9E-06 57.1 3.5 17 526-542 3-19 (184)
204 2wwf_A Thymidilate kinase, put 91.8 0.077 2.6E-06 58.5 3.3 18 525-542 10-27 (212)
205 3fb4_A Adenylate kinase; psych 91.8 0.075 2.6E-06 59.1 3.2 15 528-542 3-17 (216)
206 1kag_A SKI, shikimate kinase I 91.8 0.081 2.8E-06 56.5 3.3 17 526-542 5-21 (173)
207 3lw7_A Adenylate kinase relate 91.8 0.062 2.1E-06 56.7 2.4 17 526-542 2-18 (179)
208 2xcb_A PCRH, regulatory protei 91.7 1.7 5.9E-05 44.2 13.2 85 901-993 21-113 (142)
209 2pbr_A DTMP kinase, thymidylat 91.7 0.077 2.6E-06 57.4 3.1 16 527-542 2-17 (195)
210 2p65_A Hypothetical protein PF 91.7 0.065 2.2E-06 57.1 2.4 18 525-542 43-60 (187)
211 3dl0_A Adenylate kinase; phosp 91.7 0.071 2.4E-06 59.3 2.8 15 528-542 3-17 (216)
212 3e4b_A ALGK; tetratricopeptide 91.6 12 0.00041 46.2 23.1 124 838-967 172-314 (452)
213 1ihg_A Cyclophilin 40; ppiase 91.6 0.86 2.9E-05 55.3 12.4 89 901-995 226-336 (370)
214 2vgx_A Chaperone SYCD; alterna 91.6 1.6 5.4E-05 45.4 12.8 87 900-994 23-117 (148)
215 2qx5_A Nucleoporin NIC96; mRNA 91.3 3 0.0001 54.5 17.7 131 848-978 300-481 (661)
216 1nn5_A Similar to deoxythymidy 91.3 0.094 3.2E-06 57.9 3.2 18 525-542 9-26 (215)
217 1jjv_A Dephospho-COA kinase; P 91.3 0.082 2.8E-06 58.4 2.7 16 527-542 4-19 (206)
218 3trf_A Shikimate kinase, SK; a 91.3 0.1 3.4E-06 56.5 3.3 18 525-542 5-22 (185)
219 3bos_A Putative DNA replicatio 91.2 0.098 3.3E-06 58.3 3.3 18 525-542 52-69 (242)
220 2r2a_A Uncharacterized protein 91.2 0.095 3.3E-06 58.7 3.1 19 527-545 7-25 (199)
221 2chg_A Replication factor C sm 91.2 0.12 4.3E-06 56.2 4.0 18 525-542 38-55 (226)
222 2fz4_A DNA repair protein RAD2 91.2 0.15 5E-06 58.3 4.8 41 507-547 87-130 (237)
223 1qf9_A UMP/CMP kinase, protein 91.1 0.094 3.2E-06 56.6 3.0 17 526-542 7-23 (194)
224 2c95_A Adenylate kinase 1; tra 91.1 0.1 3.5E-06 56.7 3.3 18 525-542 9-26 (196)
225 3iij_A Coilin-interacting nucl 91.1 0.11 3.8E-06 56.1 3.5 18 525-542 11-28 (180)
226 1tev_A UMP-CMP kinase; ploop, 91.1 0.091 3.1E-06 56.8 2.8 17 526-542 4-20 (196)
227 2grj_A Dephospho-COA kinase; T 91.1 0.09 3.1E-06 58.5 2.8 18 525-542 12-29 (192)
228 1nks_A Adenylate kinase; therm 91.0 0.097 3.3E-06 56.5 2.9 16 527-542 3-18 (194)
229 1kht_A Adenylate kinase; phosp 91.0 0.11 3.7E-06 56.1 3.3 17 526-542 4-20 (192)
230 1cke_A CK, MSSA, protein (cyti 91.0 0.11 3.7E-06 58.1 3.3 17 526-542 6-22 (227)
231 1e6c_A Shikimate kinase; phosp 91.0 0.11 3.9E-06 55.2 3.4 17 526-542 3-19 (173)
232 3e4b_A ALGK; tetratricopeptide 90.9 6.5 0.00022 48.6 19.6 54 940-993 176-244 (452)
233 2fbn_A 70 kDa peptidylprolyl i 90.9 1.4 4.6E-05 47.5 11.9 90 899-994 39-150 (198)
234 3cm0_A Adenylate kinase; ATP-b 90.9 0.11 3.6E-06 56.3 3.0 16 527-542 6-21 (186)
235 2xev_A YBGF; tetratricopeptide 90.8 1.8 6.3E-05 42.3 11.8 84 903-994 7-104 (129)
236 1qhx_A CPT, protein (chloramph 90.7 0.094 3.2E-06 56.2 2.5 17 526-542 4-20 (178)
237 1ly1_A Polynucleotide kinase; 90.7 0.082 2.8E-06 56.5 2.0 17 526-542 3-19 (181)
238 2qz4_A Paraplegin; AAA+, SPG7, 90.7 0.11 3.9E-06 59.0 3.3 20 523-542 37-56 (262)
239 2bwj_A Adenylate kinase 5; pho 90.6 0.12 4.1E-06 56.3 3.3 18 525-542 12-29 (199)
240 1wao_1 Serine/threonine protei 90.6 0.085 2.9E-06 66.3 2.3 93 844-966 8-100 (477)
241 1ofh_A ATP-dependent HSL prote 90.6 0.12 4.2E-06 60.1 3.5 18 525-542 50-67 (310)
242 2r5s_A Uncharacterized protein 90.6 2.5 8.5E-05 44.6 13.4 59 902-968 10-68 (176)
243 2v54_A DTMP kinase, thymidylat 90.6 0.11 3.9E-06 56.8 3.0 17 526-542 5-21 (204)
244 3syl_A Protein CBBX; photosynt 90.6 0.11 3.9E-06 60.7 3.2 18 525-542 67-84 (309)
245 1njg_A DNA polymerase III subu 90.6 0.12 4.2E-06 56.8 3.3 17 526-542 46-62 (250)
246 2vyi_A SGTA protein; chaperone 90.5 1.3 4.6E-05 42.5 10.4 88 899-994 13-108 (131)
247 3urz_A Uncharacterized protein 90.5 3.6 0.00012 44.9 15.1 87 903-995 9-117 (208)
248 2ooe_A Cleavage stimulation fa 90.5 2.6 9E-05 52.8 15.7 116 839-966 318-451 (530)
249 3tlx_A Adenylate kinase 2; str 90.4 0.11 3.8E-06 59.5 2.8 18 525-542 29-46 (243)
250 3q49_B STIP1 homology and U bo 90.4 1.8 6.3E-05 42.8 11.6 85 900-992 11-103 (137)
251 1l8q_A Chromosomal replication 90.4 0.13 4.3E-06 61.1 3.4 17 526-542 38-54 (324)
252 1na0_A Designed protein CTPR3; 90.4 1.9 6.6E-05 41.0 11.3 87 900-994 11-105 (125)
253 2plr_A DTMP kinase, probable t 90.4 0.12 4.2E-06 56.6 3.1 16 527-542 6-21 (213)
254 3b6e_A Interferon-induced heli 90.2 0.14 4.8E-06 56.2 3.4 39 508-546 28-69 (216)
255 2cdn_A Adenylate kinase; phosp 90.2 0.14 4.8E-06 56.3 3.3 17 526-542 21-37 (201)
256 3h4m_A Proteasome-activating n 90.1 0.11 3.6E-06 60.3 2.4 18 525-542 51-68 (285)
257 2vli_A Antibiotic resistance p 90.1 0.1 3.6E-06 56.1 2.2 17 526-542 6-22 (183)
258 2pt5_A Shikimate kinase, SK; a 90.1 0.14 4.7E-06 54.4 3.0 16 527-542 2-17 (168)
259 1ukz_A Uridylate kinase; trans 90.1 0.12 4.2E-06 56.8 2.7 17 526-542 16-32 (203)
260 2gxq_A Heat resistant RNA depe 90.1 0.21 7.1E-06 54.7 4.6 36 512-547 22-60 (207)
261 2bjv_A PSP operon transcriptio 90.0 0.16 5.4E-06 58.4 3.7 18 525-542 29-46 (265)
262 1gvn_B Zeta; postsegregational 90.0 0.15 5.1E-06 60.1 3.5 18 525-542 33-50 (287)
263 2rhm_A Putative kinase; P-loop 89.9 0.13 4.4E-06 55.7 2.7 17 526-542 6-22 (193)
264 1elr_A TPR2A-domain of HOP; HO 89.9 3.5 0.00012 39.6 12.9 85 900-992 6-105 (131)
265 2p5t_B PEZT; postsegregational 89.8 0.13 4.3E-06 59.3 2.6 18 525-542 32-49 (253)
266 2kck_A TPR repeat; tetratricop 89.8 1.8 6.3E-05 40.5 10.5 85 902-994 10-105 (112)
267 1lv7_A FTSH; alpha/beta domain 89.6 0.16 5.4E-06 58.1 3.3 18 525-542 45-62 (257)
268 4eun_A Thermoresistant glucoki 89.6 0.17 5.7E-06 55.9 3.3 18 525-542 29-46 (200)
269 2if2_A Dephospho-COA kinase; a 89.6 0.14 4.8E-06 56.3 2.6 16 527-542 3-18 (204)
270 2lni_A Stress-induced-phosphop 89.5 0.97 3.3E-05 44.0 8.5 88 899-994 17-112 (133)
271 1knq_A Gluconate kinase; ALFA/ 89.5 0.16 5.6E-06 54.4 3.1 16 527-542 10-25 (175)
272 1d2n_A N-ethylmaleimide-sensit 89.4 0.21 7.1E-06 57.7 4.1 18 525-542 64-81 (272)
273 3b9p_A CG5977-PA, isoform A; A 89.4 0.13 4.4E-06 60.0 2.4 18 525-542 54-71 (297)
274 3umf_A Adenylate kinase; rossm 89.4 0.15 5.2E-06 57.9 2.8 24 524-547 28-53 (217)
275 2jaq_A Deoxyguanosine kinase; 89.4 0.16 5.6E-06 55.3 3.0 16 527-542 2-17 (205)
276 3k9i_A BH0479 protein; putativ 89.4 0.67 2.3E-05 45.7 7.3 85 855-966 3-87 (117)
277 2l6j_A TPR repeat-containing p 89.3 0.11 3.9E-06 49.6 1.5 59 841-921 3-61 (111)
278 1zp6_A Hypothetical protein AT 89.3 0.14 4.9E-06 55.5 2.5 18 525-542 9-26 (191)
279 1m7g_A Adenylylsulfate kinase; 89.2 0.23 7.9E-06 55.2 4.1 29 514-542 12-42 (211)
280 3vaa_A Shikimate kinase, SK; s 89.2 0.18 6.1E-06 55.6 3.2 18 525-542 25-42 (199)
281 3uie_A Adenylyl-sulfate kinase 89.1 0.24 8.1E-06 54.7 4.1 29 514-542 12-42 (200)
282 1e4v_A Adenylate kinase; trans 89.1 0.17 6E-06 56.3 3.1 15 528-542 3-17 (214)
283 3tr0_A Guanylate kinase, GMP k 89.1 0.17 5.7E-06 55.5 2.8 17 526-542 8-24 (205)
284 2j41_A Guanylate kinase; GMP, 89.0 0.19 6.4E-06 55.1 3.1 18 525-542 6-23 (207)
285 1via_A Shikimate kinase; struc 88.9 0.21 7.1E-06 53.7 3.4 16 527-542 6-21 (175)
286 3t15_A Ribulose bisphosphate c 88.9 0.18 6.3E-06 59.3 3.2 18 525-542 36-53 (293)
287 1sxj_D Activator 1 41 kDa subu 88.9 0.23 8E-06 58.9 4.1 17 526-542 59-75 (353)
288 3llm_A ATP-dependent RNA helic 88.8 0.23 8E-06 56.2 3.9 32 511-542 59-93 (235)
289 1uj2_A Uridine-cytidine kinase 88.7 0.17 5.9E-06 58.0 2.7 18 525-542 22-39 (252)
290 3ake_A Cytidylate kinase; CMP 88.7 0.21 7.2E-06 54.7 3.3 17 526-542 3-19 (208)
291 3a00_A Guanylate kinase, GMP k 88.7 0.2 6.9E-06 54.7 3.1 22 526-547 2-25 (186)
292 2pm7_A Protein WEB1, protein t 88.6 7.6 0.00026 47.9 17.2 130 903-1039 148-286 (399)
293 1aky_A Adenylate kinase; ATP:A 88.6 0.21 7E-06 55.9 3.1 17 526-542 5-21 (220)
294 2v1u_A Cell division control p 88.5 0.2 6.8E-06 60.0 3.2 18 525-542 44-61 (387)
295 1hxi_A PEX5, peroxisome target 88.5 1.2 3.9E-05 44.8 8.4 84 901-992 20-111 (121)
296 2qor_A Guanylate kinase; phosp 88.4 0.21 7.2E-06 55.3 3.1 18 525-542 12-29 (204)
297 3rjv_A Putative SEL1 repeat pr 88.4 3.3 0.00011 45.4 12.8 123 839-966 47-194 (212)
298 2r44_A Uncharacterized protein 88.4 0.15 5.2E-06 60.6 2.0 18 525-542 46-63 (331)
299 3sr0_A Adenylate kinase; phosp 88.3 0.22 7.4E-06 56.1 3.1 21 527-547 2-24 (206)
300 3ma5_A Tetratricopeptide repea 88.2 3.5 0.00012 39.6 11.4 58 901-966 10-67 (100)
301 2dba_A Smooth muscle cell asso 88.2 2.4 8.1E-05 42.2 10.5 86 900-994 30-127 (148)
302 2kat_A Uncharacterized protein 88.2 2.5 8.6E-05 41.1 10.4 70 839-936 16-85 (115)
303 1tue_A Replication protein E1; 88.2 0.18 6E-06 57.0 2.2 22 526-547 59-82 (212)
304 1in4_A RUVB, holliday junction 88.2 0.24 8.1E-06 59.4 3.5 18 525-542 51-68 (334)
305 2pez_A Bifunctional 3'-phospho 88.1 0.23 7.8E-06 53.6 3.1 16 527-542 7-22 (179)
306 1uf9_A TT1252 protein; P-loop, 88.1 0.2 6.9E-06 54.7 2.6 17 526-542 9-25 (203)
307 3uk6_A RUVB-like 2; hexameric 88.1 0.22 7.6E-06 59.7 3.3 17 526-542 71-87 (368)
308 1vht_A Dephospho-COA kinase; s 88.0 0.21 7.1E-06 55.7 2.7 16 527-542 6-21 (218)
309 3cf0_A Transitional endoplasmi 88.0 0.19 6.4E-06 59.4 2.4 18 525-542 49-66 (301)
310 3pvs_A Replication-associated 87.9 0.23 7.9E-06 62.2 3.4 18 525-542 50-67 (447)
311 1t6n_A Probable ATP-dependent 87.9 0.36 1.2E-05 53.6 4.6 38 510-547 32-73 (220)
312 2qt1_A Nicotinamide riboside k 87.9 0.21 7.3E-06 55.2 2.7 17 526-542 22-38 (207)
313 2r62_A Cell division protease 87.9 0.12 4.1E-06 59.4 0.7 18 525-542 44-61 (268)
314 1vec_A ATP-dependent RNA helic 87.9 0.36 1.2E-05 52.9 4.4 35 513-547 25-62 (206)
315 4fcw_A Chaperone protein CLPB; 87.8 0.21 7.3E-06 58.3 2.8 22 526-547 48-71 (311)
316 2xb4_A Adenylate kinase; ATP-b 87.8 0.24 8.3E-06 55.7 3.1 16 527-542 2-17 (223)
317 2kjq_A DNAA-related protein; s 87.7 0.44 1.5E-05 50.6 4.9 18 525-542 36-53 (149)
318 2f6r_A COA synthase, bifunctio 87.6 0.21 7.3E-06 58.5 2.6 17 526-542 76-92 (281)
319 1qde_A EIF4A, translation init 87.6 0.39 1.3E-05 53.4 4.6 35 513-547 36-73 (224)
320 1xjc_A MOBB protein homolog; s 87.6 0.29 9.9E-06 53.5 3.4 23 526-548 5-29 (169)
321 3eie_A Vacuolar protein sortin 87.6 0.2 7E-06 59.6 2.4 18 525-542 51-68 (322)
322 4f3v_A ESX-1 secretion system 87.5 2.8 9.4E-05 49.5 11.9 122 841-991 101-233 (282)
323 3hws_A ATP-dependent CLP prote 87.5 0.26 8.7E-06 59.6 3.3 23 525-547 51-75 (363)
324 1zd8_A GTP:AMP phosphotransfer 87.5 0.24 8.2E-06 55.7 2.9 18 525-542 7-24 (227)
325 1ex7_A Guanylate kinase; subst 87.5 0.27 9.3E-06 54.5 3.2 18 525-542 1-18 (186)
326 3pfi_A Holliday junction ATP-d 87.4 0.22 7.7E-06 59.1 2.7 18 525-542 55-72 (338)
327 1zak_A Adenylate kinase; ATP:A 87.4 0.29 9.9E-06 54.7 3.5 18 525-542 5-22 (222)
328 1fnn_A CDC6P, cell division co 87.3 0.26 8.9E-06 59.2 3.2 16 527-542 46-61 (389)
329 1ak2_A Adenylate kinase isoenz 87.2 0.27 9.4E-06 55.6 3.1 17 526-542 17-33 (233)
330 1kgd_A CASK, peripheral plasma 87.2 0.26 8.8E-06 53.6 2.8 17 526-542 6-22 (180)
331 1sxj_C Activator 1 40 kDa subu 87.2 0.33 1.1E-05 58.1 4.0 16 527-542 48-63 (340)
332 3tau_A Guanylate kinase, GMP k 87.1 0.23 8E-06 55.3 2.4 18 525-542 8-25 (208)
333 1g8p_A Magnesium-chelatase 38 87.0 0.19 6.6E-06 59.7 1.8 18 525-542 45-62 (350)
334 1um8_A ATP-dependent CLP prote 86.9 0.29 9.8E-06 59.4 3.3 18 525-542 72-89 (376)
335 2if4_A ATFKBP42; FKBP-like, al 86.9 0.71 2.4E-05 55.0 6.7 54 941-994 231-292 (338)
336 1ixz_A ATP-dependent metallopr 86.9 0.28 9.4E-06 56.0 2.9 17 526-542 50-66 (254)
337 2qby_A CDC6 homolog 1, cell di 86.9 0.3 1E-05 58.3 3.4 18 525-542 45-62 (386)
338 3be4_A Adenylate kinase; malar 86.9 0.29 1E-05 54.7 3.0 16 527-542 7-22 (217)
339 1ye8_A Protein THEP1, hypothet 86.8 0.31 1.1E-05 53.4 3.1 21 527-547 2-24 (178)
340 3bor_A Human initiation factor 86.7 0.28 9.4E-06 55.6 2.8 38 510-547 48-89 (237)
341 3nbx_X ATPase RAVA; AAA+ ATPas 86.6 0.23 8E-06 63.0 2.3 18 525-542 41-58 (500)
342 2pl3_A Probable ATP-dependent 86.6 0.47 1.6E-05 53.3 4.6 35 513-547 47-84 (236)
343 2z4s_A Chromosomal replication 86.6 0.32 1.1E-05 60.7 3.5 18 525-542 130-147 (440)
344 3asz_A Uridine kinase; cytidin 86.6 0.31 1E-05 53.9 3.0 21 527-547 8-30 (211)
345 2qby_B CDC6 homolog 3, cell di 86.5 0.31 1.1E-05 58.6 3.2 18 525-542 45-62 (384)
346 1ojl_A Transcriptional regulat 86.5 0.36 1.2E-05 57.2 3.7 18 525-542 25-42 (304)
347 4i1u_A Dephospho-COA kinase; s 86.5 0.29 1E-05 55.3 2.8 16 527-542 11-26 (210)
348 1xwi_A SKD1 protein; VPS4B, AA 86.5 0.25 8.6E-06 59.0 2.4 18 525-542 45-62 (322)
349 2bbw_A Adenylate kinase 4, AK4 86.5 0.33 1.1E-05 55.3 3.3 27 516-542 17-44 (246)
350 2bdt_A BH3686; alpha-beta prot 86.5 0.28 9.7E-06 53.3 2.6 16 527-542 4-19 (189)
351 1hqc_A RUVB; extended AAA-ATPa 86.4 0.28 9.6E-06 57.7 2.7 18 525-542 38-55 (324)
352 2chq_A Replication factor C sm 86.3 0.46 1.6E-05 55.4 4.4 17 526-542 39-55 (319)
353 2yvu_A Probable adenylyl-sulfa 86.2 0.34 1.2E-05 52.6 3.1 18 525-542 13-30 (186)
354 2qp9_X Vacuolar protein sortin 86.1 0.36 1.2E-05 58.4 3.5 18 525-542 84-101 (355)
355 3a4m_A L-seryl-tRNA(SEC) kinas 85.9 0.27 9.4E-06 56.8 2.2 17 526-542 5-21 (260)
356 2hr2_A Hypothetical protein; a 85.9 5.2 0.00018 43.2 12.0 85 901-991 14-127 (159)
357 2qgz_A Helicase loader, putati 85.8 0.37 1.3E-05 57.3 3.3 17 526-542 153-169 (308)
358 1lvg_A Guanylate kinase, GMP k 85.6 0.41 1.4E-05 52.9 3.4 22 526-547 5-28 (198)
359 2z0m_A 337AA long hypothetical 85.5 0.55 1.9E-05 54.9 4.6 36 513-548 16-54 (337)
360 1iqp_A RFCS; clamp loader, ext 85.4 0.38 1.3E-05 56.3 3.2 17 526-542 47-63 (327)
361 1rz3_A Hypothetical protein rb 85.3 0.38 1.3E-05 53.2 3.0 18 525-542 22-39 (201)
362 2x8a_A Nuclear valosin-contain 85.3 0.31 1.1E-05 57.0 2.3 17 526-542 45-61 (274)
363 1gtv_A TMK, thymidylate kinase 85.3 0.22 7.4E-06 55.0 0.9 21 527-547 2-24 (214)
364 2va8_A SSO2462, SKI2-type heli 85.1 0.41 1.4E-05 63.1 3.6 38 510-547 26-68 (715)
365 3iuy_A Probable ATP-dependent 85.1 0.62 2.1E-05 52.0 4.6 35 513-547 42-79 (228)
366 1hv8_A Putative ATP-dependent 85.0 0.55 1.9E-05 55.5 4.3 35 513-547 28-66 (367)
367 3dkp_A Probable ATP-dependent 84.9 0.64 2.2E-05 52.5 4.6 35 513-547 51-88 (245)
368 1iy2_A ATP-dependent metallopr 84.9 0.39 1.3E-05 55.7 2.9 17 526-542 74-90 (278)
369 1jr3_A DNA polymerase III subu 84.9 0.45 1.5E-05 57.0 3.5 18 525-542 38-55 (373)
370 2e2e_A Formate-dependent nitri 84.8 5.4 0.00018 41.6 11.5 88 900-995 46-144 (177)
371 2p6r_A Afuhel308 helicase; pro 84.8 0.19 6.6E-06 66.1 0.3 38 510-547 21-62 (702)
372 1klx_A Cysteine rich protein B 84.8 5.1 0.00017 41.2 11.1 15 856-870 9-23 (138)
373 4b4t_J 26S protease regulatory 84.8 0.43 1.5E-05 58.9 3.3 18 525-542 182-199 (405)
374 3lnc_A Guanylate kinase, GMP k 84.7 0.31 1.1E-05 55.0 1.9 18 525-542 27-44 (231)
375 1sxj_E Activator 1 40 kDa subu 84.7 0.41 1.4E-05 57.1 3.0 19 527-545 38-58 (354)
376 1wrb_A DJVLGB; RNA helicase, D 84.7 0.77 2.6E-05 52.2 5.2 35 513-547 45-82 (253)
377 2c2l_A CHIP, carboxy terminus 84.7 3.4 0.00012 47.6 10.7 85 900-992 6-98 (281)
378 2orw_A Thymidine kinase; TMTK, 84.7 0.46 1.6E-05 52.2 3.2 18 526-543 4-21 (184)
379 3fe2_A Probable ATP-dependent 84.3 0.74 2.5E-05 52.1 4.8 35 513-547 51-88 (242)
380 3d8b_A Fidgetin-like protein 1 84.2 0.38 1.3E-05 58.2 2.5 18 525-542 117-134 (357)
381 2ze6_A Isopentenyl transferase 84.2 0.46 1.6E-05 54.8 3.1 16 527-542 3-18 (253)
382 1np6_A Molybdopterin-guanine d 84.1 0.51 1.7E-05 51.7 3.2 23 525-547 6-30 (174)
383 2oxc_A Probable ATP-dependent 84.1 0.74 2.5E-05 51.7 4.7 38 510-547 42-83 (230)
384 4a4z_A Antiviral helicase SKI2 84.0 0.68 2.3E-05 63.6 5.1 44 501-544 27-73 (997)
385 1p9r_A General secretion pathw 84.0 0.57 2E-05 58.2 3.9 34 514-547 151-191 (418)
386 1sxj_A Activator 1 95 kDa subu 83.8 0.45 1.6E-05 60.5 3.1 18 525-542 77-94 (516)
387 3ber_A Probable ATP-dependent 83.8 0.74 2.5E-05 52.7 4.6 35 513-547 65-102 (249)
388 3c8u_A Fructokinase; YP_612366 83.8 0.49 1.7E-05 52.5 3.0 23 525-547 22-46 (208)
389 1s2m_A Putative ATP-dependent 83.8 0.71 2.4E-05 55.7 4.6 35 513-547 43-80 (400)
390 3u61_B DNA polymerase accessor 83.7 0.43 1.5E-05 56.4 2.6 17 526-542 49-65 (324)
391 1na3_A Designed protein CTPR2; 83.7 3 0.0001 38.0 7.9 59 900-966 11-69 (91)
392 1sxj_B Activator 1 37 kDa subu 83.6 0.64 2.2E-05 54.2 4.0 17 526-542 43-59 (323)
393 3ly5_A ATP-dependent RNA helic 83.5 0.61 2.1E-05 53.8 3.7 37 511-547 73-113 (262)
394 1q0u_A Bstdead; DEAD protein, 83.4 0.58 2E-05 52.0 3.4 36 512-547 25-63 (219)
395 1a7j_A Phosphoribulokinase; tr 83.4 0.4 1.4E-05 56.6 2.1 17 526-542 6-22 (290)
396 1wao_1 Serine/threonine protei 83.3 1.3 4.5E-05 55.5 6.9 97 840-966 38-136 (477)
397 1na3_A Designed protein CTPR2; 83.2 7.2 0.00025 35.4 10.3 59 841-921 8-66 (91)
398 4eaq_A DTMP kinase, thymidylat 83.2 0.54 1.8E-05 53.5 3.0 23 525-547 26-50 (229)
399 3pxg_A Negative regulator of g 83.1 0.54 1.8E-05 59.1 3.3 18 525-542 201-218 (468)
400 1klx_A Cysteine rich protein B 83.0 6 0.00021 40.6 10.7 85 848-966 31-123 (138)
401 2l6j_A TPR repeat-containing p 83.0 2.5 8.7E-05 40.0 7.3 59 900-966 6-64 (111)
402 2zan_A Vacuolar protein sortin 82.8 0.46 1.6E-05 59.4 2.5 18 525-542 167-184 (444)
403 2c9o_A RUVB-like 1; hexameric 82.7 0.47 1.6E-05 59.4 2.5 18 525-542 63-80 (456)
404 3qww_A SET and MYND domain-con 82.7 3.5 0.00012 51.4 10.3 50 911-966 311-366 (433)
405 1ltq_A Polynucleotide kinase; 82.6 0.43 1.5E-05 55.8 2.0 17 526-542 3-19 (301)
406 1xti_A Probable ATP-dependent 82.6 0.8 2.7E-05 54.9 4.4 38 510-547 26-67 (391)
407 2b8t_A Thymidine kinase; deoxy 82.5 0.61 2.1E-05 53.1 3.1 22 526-547 13-34 (223)
408 4b4t_K 26S protease regulatory 82.4 0.5 1.7E-05 58.9 2.5 18 525-542 206-223 (428)
409 2h92_A Cytidylate kinase; ross 82.3 0.66 2.3E-05 51.5 3.3 17 526-542 4-20 (219)
410 3vfd_A Spastin; ATPase, microt 82.3 0.49 1.7E-05 57.8 2.4 18 525-542 148-165 (389)
411 4b4t_I 26S protease regulatory 82.2 0.61 2.1E-05 58.0 3.2 19 524-542 215-233 (437)
412 4b4t_M 26S protease regulatory 82.1 0.51 1.8E-05 58.8 2.5 19 524-542 214-232 (434)
413 2w0m_A SSO2452; RECA, SSPF, un 82.1 0.67 2.3E-05 51.2 3.2 18 525-542 23-40 (235)
414 1rif_A DAR protein, DNA helica 82.0 0.7 2.4E-05 53.6 3.5 32 512-543 112-146 (282)
415 1a5t_A Delta prime, HOLB; zinc 81.9 0.7 2.4E-05 55.3 3.5 18 525-542 24-41 (334)
416 4b4t_L 26S protease subunit RP 81.8 0.53 1.8E-05 58.7 2.5 18 525-542 215-232 (437)
417 2jeo_A Uridine-cytidine kinase 81.8 0.66 2.2E-05 52.9 3.1 16 527-542 27-42 (245)
418 3pey_A ATP-dependent RNA helic 81.7 0.95 3.3E-05 54.0 4.6 36 512-547 26-66 (395)
419 2j0s_A ATP-dependent RNA helic 81.7 0.88 3E-05 55.1 4.3 37 511-547 56-96 (410)
420 1q3t_A Cytidylate kinase; nucl 81.7 0.67 2.3E-05 52.5 3.1 17 526-542 17-33 (236)
421 3kta_A Chromosome segregation 81.4 0.7 2.4E-05 49.7 3.0 18 525-542 26-43 (182)
422 2ce7_A Cell division protein F 81.3 0.56 1.9E-05 59.2 2.4 18 525-542 49-66 (476)
423 2zpa_A Uncharacterized protein 81.3 0.62 2.1E-05 60.8 2.9 30 513-542 175-209 (671)
424 3dm5_A SRP54, signal recogniti 81.3 0.83 2.8E-05 57.1 3.9 25 525-549 100-126 (443)
425 3ney_A 55 kDa erythrocyte memb 81.0 0.7 2.4E-05 51.7 2.8 23 525-547 19-43 (197)
426 2zts_A Putative uncharacterize 80.7 0.6 2.1E-05 52.4 2.2 18 525-542 30-47 (251)
427 2cvh_A DNA repair and recombin 80.7 0.63 2.1E-05 51.3 2.3 18 525-542 20-37 (220)
428 2dr3_A UPF0273 protein PH0284; 80.7 0.61 2.1E-05 52.3 2.3 18 525-542 23-40 (247)
429 3hu3_A Transitional endoplasmi 80.7 0.61 2.1E-05 59.1 2.5 19 524-542 237-255 (489)
430 2fwr_A DNA repair protein RAD2 80.6 1.1 3.9E-05 55.6 4.9 40 508-547 88-130 (472)
431 1z6g_A Guanylate kinase; struc 80.6 0.81 2.8E-05 51.4 3.2 23 525-547 23-47 (218)
432 3oiy_A Reverse gyrase helicase 80.4 0.85 2.9E-05 55.6 3.6 36 510-545 18-56 (414)
433 3nwj_A ATSK2; P loop, shikimat 80.4 0.85 2.9E-05 52.8 3.4 18 525-542 48-65 (250)
434 2eyu_A Twitching motility prot 80.4 0.79 2.7E-05 53.2 3.1 24 524-547 24-49 (261)
435 4e22_A Cytidylate kinase; P-lo 80.3 0.69 2.4E-05 53.2 2.6 17 526-542 28-44 (252)
436 4gp7_A Metallophosphoesterase; 80.1 0.66 2.3E-05 50.0 2.2 17 526-542 10-26 (171)
437 2f1r_A Molybdopterin-guanine d 80.0 0.52 1.8E-05 51.4 1.4 23 526-548 3-27 (171)
438 2i4i_A ATP-dependent RNA helic 79.9 1.2 4E-05 54.0 4.6 34 513-546 37-73 (417)
439 2zj8_A DNA helicase, putative 79.6 1.4 4.8E-05 58.2 5.5 38 510-547 19-61 (720)
440 1dek_A Deoxynucleoside monopho 79.4 0.81 2.8E-05 52.8 2.7 16 527-542 3-18 (241)
441 3jvv_A Twitching mobility prot 79.4 0.86 2.9E-05 55.4 3.1 24 524-547 122-147 (356)
442 1odf_A YGR205W, hypothetical 3 79.1 0.89 3.1E-05 53.7 3.1 23 525-547 31-55 (290)
443 3m6a_A ATP-dependent protease 79.1 0.87 3E-05 58.4 3.2 23 525-547 108-132 (543)
444 3fht_A ATP-dependent RNA helic 79.0 1.3 4.5E-05 53.3 4.6 35 513-547 47-86 (412)
445 2ewv_A Twitching motility prot 79.0 0.85 2.9E-05 55.7 2.9 26 522-547 133-160 (372)
446 1n0w_A DNA repair protein RAD5 78.8 0.77 2.6E-05 51.4 2.3 18 525-542 24-41 (243)
447 3r20_A Cytidylate kinase; stru 78.8 1 3.5E-05 51.7 3.3 18 525-542 9-26 (233)
448 3lvg_A Clathrin heavy chain 1; 78.8 0.038 1.3E-06 68.8 -8.8 34 945-978 296-329 (624)
449 1sq5_A Pantothenate kinase; P- 78.6 0.92 3.1E-05 53.8 3.0 17 526-542 81-97 (308)
450 2kat_A Uncharacterized protein 78.5 4 0.00014 39.6 7.1 59 900-966 21-79 (115)
451 2wpv_A GET4, UPF0363 protein Y 78.5 1.2E+02 0.004 36.2 21.1 79 940-1040 134-214 (312)
452 3pxi_A Negative regulator of g 78.5 0.93 3.2E-05 60.3 3.3 18 525-542 201-218 (758)
453 3eiq_A Eukaryotic initiation f 78.5 1.2 4.1E-05 53.8 4.1 35 513-547 62-99 (414)
454 2kc7_A BFR218_protein; tetratr 78.2 4.7 0.00016 37.8 7.3 55 904-966 6-61 (99)
455 3k9i_A BH0479 protein; putativ 78.1 2 6.9E-05 42.1 4.9 52 942-993 29-88 (117)
456 1w5s_A Origin recognition comp 78.1 0.77 2.6E-05 55.6 2.2 18 525-542 50-69 (412)
457 1g41_A Heat shock protein HSLU 78.0 1 3.5E-05 56.3 3.3 18 525-542 50-67 (444)
458 2i3b_A HCR-ntpase, human cance 77.9 1.2 4.1E-05 49.3 3.4 21 527-547 3-25 (189)
459 3kl4_A SRP54, signal recogniti 77.8 0.9 3.1E-05 56.7 2.7 24 525-548 97-122 (433)
460 4b4t_H 26S protease regulatory 77.8 0.78 2.7E-05 57.5 2.1 20 523-542 241-260 (467)
461 4edh_A DTMP kinase, thymidylat 77.5 1.2 4E-05 50.3 3.3 21 527-547 8-30 (213)
462 1zu2_A Mitochondrial import re 77.5 6 0.00021 42.7 8.6 46 913-966 61-117 (158)
463 2ehv_A Hypothetical protein PH 77.4 0.92 3.2E-05 50.9 2.4 18 525-542 30-47 (251)
464 2oca_A DAR protein, ATP-depend 77.3 1.1 3.9E-05 56.2 3.5 34 511-544 111-147 (510)
465 1cr0_A DNA primase/helicase; R 77.1 1.1 3.7E-05 52.4 3.0 18 525-542 35-52 (296)
466 1s96_A Guanylate kinase, GMP k 77.0 1.1 3.7E-05 50.8 2.8 18 525-542 16-33 (219)
467 4e6h_A MRNA 3'-END-processing 76.9 67 0.0023 42.2 20.0 62 839-922 340-402 (679)
468 3k1j_A LON protease, ATP-depen 76.8 1.1 3.7E-05 58.2 3.1 19 524-542 59-77 (604)
469 1fuu_A Yeast initiation factor 76.6 1.1 3.9E-05 53.6 3.0 35 513-547 43-80 (394)
470 2v9p_A Replication protein E1; 76.6 1.2 4.2E-05 53.0 3.2 23 525-547 126-150 (305)
471 3tbk_A RIG-I helicase domain; 76.6 1.7 5.8E-05 54.5 4.8 34 511-544 2-38 (555)
472 2xgj_A ATP-dependent RNA helic 76.4 1.6 5.6E-05 60.0 4.8 38 507-544 80-120 (1010)
473 1znw_A Guanylate kinase, GMP k 76.4 1.2 4.2E-05 49.2 3.0 26 522-547 17-44 (207)
474 2dhr_A FTSH; AAA+ protein, hex 76.3 0.97 3.3E-05 57.4 2.4 18 525-542 64-81 (499)
475 2oap_1 GSPE-2, type II secreti 76.3 1.3 4.5E-05 56.3 3.6 20 523-542 258-277 (511)
476 4a74_A DNA repair and recombin 76.2 0.97 3.3E-05 50.1 2.2 18 525-542 25-42 (231)
477 4ady_A RPN2, 26S proteasome re 76.2 51 0.0017 44.9 18.6 233 901-1196 73-334 (963)
478 2qen_A Walker-type ATPase; unk 76.0 1.1 3.8E-05 52.7 2.7 18 525-542 31-48 (350)
479 1vma_A Cell division protein F 75.9 1.2 4.2E-05 52.9 3.0 23 525-547 104-128 (306)
480 1c9k_A COBU, adenosylcobinamid 75.9 1.1 3.7E-05 49.6 2.3 16 527-542 1-16 (180)
481 1gm5_A RECG; helicase, replica 75.7 1.1 3.9E-05 59.7 3.0 40 508-547 363-411 (780)
482 3lv8_A DTMP kinase, thymidylat 75.5 1.5 5.1E-05 50.4 3.5 23 525-547 27-51 (236)
483 3l9o_A ATP-dependent RNA helic 75.4 1.8 6.1E-05 60.1 4.8 41 507-547 178-221 (1108)
484 2gno_A DNA polymerase III, gam 75.4 0.87 3E-05 54.1 1.6 18 525-542 18-35 (305)
485 3fmo_B ATP-dependent RNA helic 75.4 2 6.8E-05 50.7 4.6 36 512-547 113-153 (300)
486 3bh0_A DNAB-like replicative h 75.3 1.1 3.6E-05 53.5 2.2 18 525-542 68-85 (315)
487 1svm_A Large T antigen; AAA+ f 75.3 1.4 4.8E-05 54.0 3.4 18 525-542 169-186 (377)
488 3gmt_A Adenylate kinase; ssgci 75.2 1.4 4.8E-05 50.4 3.1 17 526-542 9-25 (230)
489 2vhj_A Ntpase P4, P4; non- hyd 75.2 1.1 3.7E-05 53.9 2.2 18 525-542 123-140 (331)
490 1r6b_X CLPA protein; AAA+, N-t 75.1 1.3 4.5E-05 58.8 3.3 18 525-542 207-224 (758)
491 3b85_A Phosphate starvation-in 75.0 1.5 5.3E-05 49.1 3.4 26 517-542 11-39 (208)
492 2fna_A Conserved hypothetical 75.0 1.1 3.7E-05 52.8 2.3 17 526-542 31-47 (357)
493 3qwp_A SET and MYND domain-con 74.7 5.1 0.00017 49.8 8.2 13 372-384 16-28 (429)
494 3tqc_A Pantothenate kinase; bi 74.7 1.4 4.8E-05 52.9 3.1 21 527-547 94-116 (321)
495 2v5f_A Prolyl 4-hydroxylase su 74.6 11 0.00038 36.8 9.1 61 900-966 7-72 (104)
496 3zvl_A Bifunctional polynucleo 74.4 1.2 4.1E-05 55.1 2.5 18 525-542 258-275 (416)
497 2qmh_A HPR kinase/phosphorylas 74.3 1.3 4.4E-05 49.8 2.4 18 525-542 34-51 (205)
498 1f2t_A RAD50 ABC-ATPase; DNA d 74.2 1.5 5.1E-05 46.5 2.8 18 525-542 23-40 (149)
499 2ocp_A DGK, deoxyguanosine kin 74.2 1.2 4.2E-05 50.4 2.3 16 527-542 4-19 (241)
500 3mv2_B Coatomer subunit epsilo 74.2 15 0.00051 43.8 11.7 53 943-995 103-165 (310)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=6.7e-46 Score=483.12 Aligned_cols=265 Identities=32% Similarity=0.400 Sum_probs=226.8
Q ss_pred CCCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC--CCCceecccccCC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL--GHPKHLLSMQYRM 79 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~--g~p~~~L~~QYRm 79 (1987)
..||+||||||+|++||++++|+. +++++||||||+||||++.+..+...+++.|+|+|+... +.+..+|++||||
T Consensus 365 ~~Fd~vIIDEAsQ~~e~~~lipL~--~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~qYRm 442 (646)
T 4b3f_X 365 SYFDVVVIDECAQALEASCWIPLL--KARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRM 442 (646)
T ss_dssp TCCSEEEETTGGGSCHHHHTTTGG--GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCEESSS
T ss_pred ccCCEEEEcCccccchHHHHhhcc--ccceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeeecccccCC
Confidence 369999999999999999999985 468999999999999999998888899999999999864 4456789999999
Q ss_pred CccccccccccccCCccccCccccccccccc---cCCCCCCCCeEEEEeCCC----cccccccccCCHHHHHHHHHHHHH
Q 000162 80 HPSISFFPNSYFYENKIRDAPTVRKRSYEKR---FLPGPMYGPYSFINVFGG----REEFIEHSCRNMVEVSVVMKILRN 152 (1987)
Q Consensus 80 hP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~---~l~~p~~~pl~fidV~~g----~E~~~~~S~~N~~Ea~~V~~lV~~ 152 (1987)
||+|+.|+|..||+|.|.+++.+..+..... ........|+.|+++.+. .+...+.|+.|..||..|..++..
T Consensus 443 hp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~ 522 (646)
T 4b3f_X 443 HQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQA 522 (646)
T ss_dssp CHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHHHHHHHHH
T ss_pred cHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCccccccccCCccccCHHHHHHHHHHHHH
Confidence 9999999999999999998887655432211 111122348999999543 223367899999999999999999
Q ss_pred HHHHhhcccCCccEEEEccCHHHHHHHHHHhhhhhhcccCccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCc
Q 000162 153 LYKAWVESKEKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQR 232 (1987)
Q Consensus 153 L~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nR 232 (1987)
|++.+. ++.+|||||||++|+.+|++.|.+.+ ..++|+|||+|||+|+|+||+|+||++..+.+||+.|+||
T Consensus 523 L~~~gv---~~~dIgVItpYraQ~~~l~~~l~~~~-----~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rR 594 (646)
T 4b3f_X 523 LVDAGV---PARDIAVVSPYNLQVDLLRQSLVHRH-----PELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRR 594 (646)
T ss_dssp HHHHTC---CGGGEEEEESCHHHHHHHHHHHTTTC-----TTCEEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHH
T ss_pred HHhcCC---CcCcEEEECCCHHHHHHHHHHHHHhC-----CCCEECChhhcccccCCEEEEEeccCCCCCCccccCCcCc
Confidence 998764 56799999999999999999997643 3589999999999999999999999999999999999999
Q ss_pred eEEecccccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccC
Q 000162 233 INVALTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNID 277 (1987)
Q Consensus 233 LNVALTRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~ 277 (1987)
+|||+||||++||||||..+|.++ +.|+.++++++++|++..+-
T Consensus 595 lNVAlTRAk~~liivGn~~~l~~~-~~~~~li~~~~~~g~~~~~~ 638 (646)
T 4b3f_X 595 INVAVTRARRHVAVICDSRTVNNH-AFLKTLVEYFTQHGEVRTAF 638 (646)
T ss_dssp HHHHHHTEEEEEEEEECHHHHTTS-HHHHHHHHHHHHSSEEEEGG
T ss_pred EEeEhhhhhCeEEEEEchHHhcCC-HHHHHHHHHHHHCCCEeeHH
Confidence 999999999999999999999875 89999999999999998753
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=4.8e-41 Score=435.70 Aligned_cols=269 Identities=35% Similarity=0.506 Sum_probs=221.6
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCCCcc
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMHPS 82 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmhP~ 82 (1987)
+||+||||||+|+++|+.++|+. .+++++|+||||+||||++.+..+...+++.|+|+|+...+.+.++|++||||||+
T Consensus 339 ~fd~viIDEAsQ~~e~~~li~l~-~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~~~ 417 (624)
T 2gk6_A 339 QFRSILIDESTQATEPECMVPVV-LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPA 417 (624)
T ss_dssp CCSEEEETTGGGSCHHHHHHHHT-TTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSCHH
T ss_pred CCCEEEEecccccCcHHHHHHHH-hcCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcChh
Confidence 69999999999999999999985 35689999999999999998877777889999999999988889999999999999
Q ss_pred ccccccccccCCccccCccccccccccccCCCC-CCCCeEEEEeCCCcccc--cccccCCHHHHHHHHHHHHHHHHHhhc
Q 000162 83 ISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGP-MYGPYSFINVFGGREEF--IEHSCRNMVEVSVVMKILRNLYKAWVE 159 (1987)
Q Consensus 83 Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p-~~~pl~fidV~~g~E~~--~~~S~~N~~Ea~~V~~lV~~L~~~~~~ 159 (1987)
|++|+|..||+|.|.+++....+.......+.| ...|+.|+++ .|.++. .++|+.|..|++.|.+++..|+..+.
T Consensus 418 I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~-~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~- 495 (624)
T 2gk6_A 418 LSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT-QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA- 495 (624)
T ss_dssp HHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEEC-CCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTTC-
T ss_pred HHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEEEEEc-CCcceecCCCCCccCHHHHHHHHHHHHHHHHcCC-
Confidence 999999999999998776554332211111111 1357888887 454432 56789999999999999999876543
Q ss_pred ccCCccEEEEccCHHHHHHHHHHhhhhhh--cccCccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEec
Q 000162 160 SKEKLSIGIVSPYSAQVIAIQEKLGSKYE--KIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237 (1987)
Q Consensus 160 ~~~~~sIgIITPY~aQv~~Ir~~L~~~~~--~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVAL 237 (1987)
.+.+|||||||++|+..|++.+..... ......+.|+|||+|||+|+|+||+|+||++..+.+||+.+++|+|||+
T Consensus 496 --~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAl 573 (624)
T 2gk6_A 496 --KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL 573 (624)
T ss_dssp --CGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHT
T ss_pred --CCCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeeh
Confidence 567999999999999999998864211 0011358999999999999999999999999877899999999999999
Q ss_pred ccccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccC
Q 000162 238 TRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNID 277 (1987)
Q Consensus 238 TRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~ 277 (1987)
||||++|+||||..+|.++ +.|+.++++++++||++.++
T Consensus 574 TRAk~~L~ivg~~~~l~~~-~~~~~li~~~~~~~~~~~~~ 612 (624)
T 2gk6_A 574 TRARYGVIIVGNPKALSKQ-PLWNHLLNYYKEQKVLVEGP 612 (624)
T ss_dssp TSEEEEEEEEECHHHHTTS-HHHHHHHHHHHHTTCCCCSC
T ss_pred hhhhCcEEEEECHHHHccC-hHHHHHHHHHHHCCCEEeCC
Confidence 9999999999999999874 89999999999999998865
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=2.6e-40 Score=436.94 Aligned_cols=268 Identities=36% Similarity=0.516 Sum_probs=228.1
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCCCcc
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMHPS 82 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmhP~ 82 (1987)
.||+||||||+|+++++.++|+. .+.+++|+||||+||||++.+..+...+++.|+|+|+...+.+.++|++||||||+
T Consensus 515 ~fd~viIDEAsQ~~e~~~li~l~-~~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~p~ 593 (800)
T 2wjy_A 515 QFRSILIDESTQATEPECMVPVV-LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPA 593 (800)
T ss_dssp CCSEEEETTGGGSCHHHHHHHHT-TTBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSCHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHH-hcCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCCCceEehhhcCCCcH
Confidence 69999999999999999999985 45689999999999999998877777889999999999888889999999999999
Q ss_pred ccccccccccCCccccCcccccccccccc--CCCCCCCCeEEEEeCCCccc--ccccccCCHHHHHHHHHHHHHHHHHhh
Q 000162 83 ISFFPNSYFYENKIRDAPTVRKRSYEKRF--LPGPMYGPYSFINVFGGREE--FIEHSCRNMVEVSVVMKILRNLYKAWV 158 (1987)
Q Consensus 83 Is~f~s~~FY~g~L~~~~~v~~~~~~~~~--l~~p~~~pl~fidV~~g~E~--~~~~S~~N~~Ea~~V~~lV~~L~~~~~ 158 (1987)
|++|+|..||+|.|.+++....+...... .+.+ ..|+.|+++ .|.++ ..++|+.|..||+.|.+++..|+..+.
T Consensus 594 I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~-~~p~~f~~~-~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~ 671 (800)
T 2wjy_A 594 LSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQP-DKPMFFYVT-QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 671 (800)
T ss_dssp HHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSST-TSCEEEEEC-CCCCEECSSBSCEECHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHhcCCccccCCchhhhccccccccccCC-CCCEEEEEc-CCceeecCCCCcccCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999877655433221111 1222 458889988 45443 267889999999999999999987643
Q ss_pred cccCCccEEEEccCHHHHHHHHHHhhhhhh--cccCccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEe
Q 000162 159 ESKEKLSIGIVSPYSAQVIAIQEKLGSKYE--KIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVA 236 (1987)
Q Consensus 159 ~~~~~~sIgIITPY~aQv~~Ir~~L~~~~~--~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVA 236 (1987)
++.+|||||||++|+..|++.+.+... ......+.|+|||+|||+|+|+||+|+||++..+.+||+.+++|+|||
T Consensus 672 ---~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVA 748 (800)
T 2wjy_A 672 ---KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVA 748 (800)
T ss_dssp ---CGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHH
T ss_pred ---CcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCCccccccccCcchhhhh
Confidence 457999999999999999998865311 001135899999999999999999999999988889999999999999
Q ss_pred cccccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccC
Q 000162 237 LTRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNID 277 (1987)
Q Consensus 237 LTRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~ 277 (1987)
+||||++|+||||..+|..+ +.|+.++++++++||++.++
T Consensus 749 lTRAk~~LiIvG~~~~l~~~-~~w~~ll~~~~~~~~~~~~~ 788 (800)
T 2wjy_A 749 LTRARYGVIIVGNPKALSKQ-PLWNHLLNYYKEQKVLVEGP 788 (800)
T ss_dssp HTSEEEEEEEEECHHHHTSS-HHHHHHHHHHHHTTCEEESC
T ss_pred HHhhhccEEEEECHHHhccC-HHHHHHHHHHHHCCCEEeCC
Confidence 99999999999999999864 89999999999999998875
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-40 Score=435.61 Aligned_cols=269 Identities=36% Similarity=0.553 Sum_probs=227.4
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCCCcc
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMHPS 82 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmhP~ 82 (1987)
.||+||||||+|+++++.++|+. .+++++|+||||+||||++.+..+...+++.|+|+|+...+.+.++|++||||||+
T Consensus 517 ~fd~viIDEA~q~~e~~~li~l~-~~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~p~ 595 (802)
T 2xzl_A 517 KFRTVLIDESTQASEPECLIPIV-KGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPY 595 (802)
T ss_dssp CCSEEEETTGGGSCHHHHHHHHT-TTBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSCHH
T ss_pred cCCEEEEECccccchHHHHHHHH-hCCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcCCCceEeeeecCCChH
Confidence 69999999999999999999985 45689999999999999998777777889999999999888889999999999999
Q ss_pred ccccccccccCCccccCccccccccccccCCCC-CCCCeEEEEeCCCcccc--cccccCCHHHHHHHHHHHHHHHHHhhc
Q 000162 83 ISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGP-MYGPYSFINVFGGREEF--IEHSCRNMVEVSVVMKILRNLYKAWVE 159 (1987)
Q Consensus 83 Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p-~~~pl~fidV~~g~E~~--~~~S~~N~~Ea~~V~~lV~~L~~~~~~ 159 (1987)
|++|+|..||+|.|.+++....+.......+.| ...|+.|+++ .|.++. .++|+.|..||+.|.+++..|...+.
T Consensus 596 I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~-~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g~- 673 (802)
T 2xzl_A 596 LSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWAN-YGREEISANGTSFLNRIEAMNCERIITKLFRDGV- 673 (802)
T ss_dssp HHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEEC-CCCCEECTTSSSEECHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEEc-CCceeecCCCCCcCCHHHHHHHHHHHHHHHHcCC-
Confidence 999999999999998776654332211111111 2357888887 444432 57789999999999999999987643
Q ss_pred ccCCccEEEEccCHHHHHHHHHHhhhhhh--cccCccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEec
Q 000162 160 SKEKLSIGIVSPYSAQVIAIQEKLGSKYE--KIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVAL 237 (1987)
Q Consensus 160 ~~~~~sIgIITPY~aQv~~Ir~~L~~~~~--~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVAL 237 (1987)
+..+|||||||++|+..|++.|..... ......+.|+|||+|||+|+|+||+|+||++..+.+||+.+++|+|||+
T Consensus 674 --~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAl 751 (802)
T 2xzl_A 674 --KPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGL 751 (802)
T ss_dssp --CGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHH
T ss_pred --CcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCCCCCcccccCccceeeeH
Confidence 567999999999999999999865310 0011358999999999999999999999999888899999999999999
Q ss_pred ccccccEEEEcchhhhccCchHHHHHHHHHHhcCceeccC
Q 000162 238 TRARHCLWILGSERTLNHSESVWESLLDDAKARQCFFNID 277 (1987)
Q Consensus 238 TRAK~~LiIVGn~~~L~~s~~~W~~Ll~~ak~r~c~~~a~ 277 (1987)
||||++|+||||..+|.+ ++.|+.++++++++||++.++
T Consensus 752 TRAk~~LiIvg~~~~l~~-~~~w~~ll~~~~~~~~~~~~~ 790 (802)
T 2xzl_A 752 TRAKYGLVILGNPRSLAR-NTLWNHLLIHFREKGCLVEGT 790 (802)
T ss_dssp SSEEEEEEEEECHHHHTT-SHHHHHHHHHHHHHTCEEEEE
T ss_pred hhhhCeEEEEECHHHhcc-ChHHHHHHHHHHHcCCeecCC
Confidence 999999999999999987 499999999999999998875
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.85 E-value=4.1e-23 Score=265.09 Aligned_cols=284 Identities=15% Similarity=0.122 Sum_probs=156.4
Q ss_pred cccchhhhHhHHHhhcccCC---ChhhHhhhhhhccccccccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHH--H
Q 000162 472 SYVENSNVTDSLLLMKFYPL---SSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTIL--T 543 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~~~---s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVI--I 543 (1987)
|++|.++++.+.++++.... +. .++.. ++ .+++.|+++|++||.. ++.++|+|||||||||++ +
T Consensus 153 ~~~E~~ia~~l~~~~~~~~~~~~~~---~~~~~-l~----~~~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l 224 (574)
T 3e1s_A 153 LRAEKKLASLIRTLLATPPADGAGN---DDWAV-PK----KARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAV 224 (574)
T ss_dssp HHHHHHHHHHHHHHHHSCCCC-CCC---CCCCC-CT----TTTTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCccCCCh---hhHHH-HH----hhcCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHH
Confidence 56999999999998865432 11 11222 22 2278999999999988 889999999999999999 7
Q ss_pred HHHHhhhh----------hhhhhhccccCCccchhHHhhhccccccCCCCCcc--c------------------------
Q 000162 544 MKLFQNEK----------HHRMAKEQFDGVNNSLTLHTSWEVEAEEGLGGSER--C------------------------ 587 (1987)
Q Consensus 544 ikl~~~~~----------raa~a~~~l~~~~~AaTIHrLLe~~~~~~f~~ned--~------------------------ 587 (1987)
++.+...+ +++.++.+.++.+ +.|||+++++.. ++|..+.. .
T Consensus 225 ~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~-a~Tih~ll~~~~-~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~ 302 (574)
T 3e1s_A 225 ADLAESLGLEVGLCAPTGKAARRLGEVTGRT-ASTVHRLLGYGP-QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAA 302 (574)
T ss_dssp HHHHHHTTCCEEEEESSHHHHHHHHHHHTSC-EEEHHHHTTEET-TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTT
T ss_pred HHHHHhcCCeEEEecCcHHHHHHhHhhhccc-HHHHHHHHcCCc-chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHh
Confidence 77665332 2223332333322 459999998765 33333321 0
Q ss_pred ---cccEEEee-cccccccchhhhhhh-hcCCcccccccCcccCCh--hHHHHHHHHHHHHhhccCC--------CCcc-
Q 000162 588 ---ILRQLFVT-KFVLESRNTRNVERQ-EKGQLSDIFNLSQNFRTH--VGVLNLAQSVIELLYRFFP--------HSVD- 651 (1987)
Q Consensus 588 ---dL~~IFrq-a~~~~S~iv~~a~~~-~~g~l~~i~~Lt~NYRs~--~~I~~LAn~VleLl~~~~p--------~~~d- 651 (1987)
..+-||.- ..+..+-...+.... .. ......|+.+||.+ .+|..+|+.|..-..+.+. ...+
T Consensus 303 ~~~~~~lilvGD~~QL~~v~~g~~~~~l~~--~~~~~~L~~~~R~~~~s~I~~~a~~i~~g~~~~~~~d~~~~~~~~~~~ 380 (574)
T 3e1s_A 303 VPPGARVLLVGDTDQLPPVDAGLPLLALAQ--AAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTEIEPDG 380 (574)
T ss_dssp SCTTCEEEEEECTTSCCCSSSCCHHHHHHH--HSCEEECCCCCHHHHTCHHHHHHHHHHTTCCCCCCBTTEEEEECCSTT
T ss_pred CcCCCEEEEEecccccCCccCCcHHHHHHh--cCCEEEcceeEeCCCccHHHHHHHHHhCCCCcccCCCeEEEeCCCHHH
Confidence 11111110 000000000000000 00 11235678888887 5688888777642111100 0000
Q ss_pred -----------CCC-CccccccCCCCeEeccCCcHHHHHHHHhccCCC-CCCcccc-CCcEEEEecChhHH---------
Q 000162 652 -----------ILK-PETSLIYGEPPVLLESGNDENAIIKIFGNSGDA-GGNMVGF-GAEQVILVRDDCVR--------- 708 (1987)
Q Consensus 652 -----------~l~-~e~~v~~G~kP~~l~~~~~~n~i~~i~~~~~~~-~~~~i~f-g~~~vIiVr~d~~k--------- 708 (1987)
..+ .+++++++++.+..+....+..++..++..... ......| -++.+++++|+..+
T Consensus 381 ~~~~i~~~~~~~~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~ 460 (574)
T 3e1s_A 381 GARRVALMVRELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGM 460 (574)
T ss_dssp CHHHHHHHHHHTTSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEE
T ss_pred HHHHHHHHHhccCcccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeE
Confidence 012 578888888877653333344555555432210 0000111 22344444443211
Q ss_pred ----------------------HHHHhhhcCCceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCC
Q 000162 709 ----------------------KEISNYVGKQALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDST 766 (1987)
Q Consensus 709 ----------------------~~l~~~Lg~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~ 766 (1987)
..+. .+ +.+|++|||+|||+|||.||++... .
T Consensus 461 i~~~~~~~l~v~fdg~~v~~~~~~l~-~~-~~ayA~TIHksQGsEfd~Vil~l~~-------~----------------- 514 (574)
T 3e1s_A 461 VLKAEGARLTVDFDGNVVELTGAELF-NL-QLGYALTVHRAQGSEWGTVLGVLHE-------A----------------- 514 (574)
T ss_dssp EEEECSSCEEEEETTEEEEECGGGGT-TE-EECSEEEHHHHTTCCEEEEEEEECG-------G-----------------
T ss_pred EEcCCCCEEEEEECCeEEEEchHHhh-hh-hheeeeeHHHhCCccCCeEEEEcCC-------c-----------------
Confidence 1122 22 4678999999999999999995411 1
Q ss_pred CCCCCCChhhhhhhcccccccCcEEecccccccchhcccc
Q 000162 767 LPASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIWENM 806 (1987)
Q Consensus 767 ~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~~ 806 (1987)
...++ ++++|||||||||++|+|+-+.
T Consensus 515 -----------~~~~l--~r~LlYvAiTRAk~~l~lvg~~ 541 (574)
T 3e1s_A 515 -----------HMPML--SRNLVYTALTRARDRFFSAGSA 541 (574)
T ss_dssp -----------GGGGC--CHHHHHHHHHTEEEEEEEEECH
T ss_pred -----------ccccc--ccceEEEEeeeeeeEEEEEECH
Confidence 11122 2367999999999999999755
No 6
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.67 E-value=7.6e-18 Score=218.04 Aligned_cols=72 Identities=18% Similarity=0.033 Sum_probs=51.4
Q ss_pred cccchhhhHhHHHhhcccCCChhhHhhhhhhccccccccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHH--HHHH
Q 000162 472 SYVENSNVTDSLLLMKFYPLSSGIVSHLLSDRDGRELDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTIL--TMKL 546 (1987)
Q Consensus 472 ~~~e~~~~~~~~~l~~~~~~s~~~~~~l~~~~~~~e~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVI--Iikl 546 (1987)
|.+|.++++.+.+++....++. ..+...++..+.. . .-++.|++||.. .+.++|+|+|||||||++ ++..
T Consensus 113 ~~~E~~ia~~l~~~~~~~~~~~---~~~~~~l~~~~~~-~-~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 113 WCNERTVARFFNEVNHAIEVDE---ALLAQTLDKLFPV-S-DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp HHHHHHHHHHHTSCCBCCCCCH---HHHHHHHHTTCCC-T-TSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCCCCH---HHHHHHHHHHhcc-C-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 5599999999998766544665 3333333333210 0 117899999987 889999999999999998 6666
Q ss_pred Hh
Q 000162 547 FQ 548 (1987)
Q Consensus 547 ~~ 548 (1987)
+.
T Consensus 188 l~ 189 (608)
T 1w36_D 188 LI 189 (608)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.64 E-value=2.8e-16 Score=197.07 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=41.8
Q ss_pred ccCHHHHHhhcc--------CCcEEEEcCCCCChhHHH--HHHHHhhhhhhhhhhccccCCcc------------chhHH
Q 000162 513 EVTDEQLEMILF--------PRSTFILGRSGTGKTTIL--TMKLFQNEKHHRMAKEQFDGVNN------------SLTLH 570 (1987)
Q Consensus 513 ~l~~eQk~AI~~--------~~~~iItGgPGTGKTTVI--Iikl~~~~~raa~a~~~l~~~~~------------AaTIH 570 (1987)
.|+++|++|+.. .++++|+|||||||||++ +++.+...+. .....+++++. +.|||
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~~~~~~~T~h 102 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKKILSKLSGKEASTIH 102 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHHHHSSCEEEHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHhhhccchhhHH
Confidence 478999999985 469999999999999999 4444432221 01112233333 34999
Q ss_pred hhhccc
Q 000162 571 TSWEVE 576 (1987)
Q Consensus 571 rLLe~~ 576 (1987)
+++...
T Consensus 103 ~~~~~~ 108 (459)
T 3upu_A 103 SILKIN 108 (459)
T ss_dssp HHHTEE
T ss_pred HHhccC
Confidence 998854
No 8
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.58 E-value=9.2e-16 Score=197.15 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=131.3
Q ss_pred CCcEEEEecCCCCChhhHhhhcc-CCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCCC-
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQ-LPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMH- 80 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~-l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmh- 80 (1987)
++|+||||||+|++...+...+. ++...++|+|||+.||||+.. .+.|..+.. ..+.+.|+++||++
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~----------g~~~~~l~~-~~~~~~L~~~~R~~~ 347 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDA----------GLPLLALAQ-AAPTIKLTQVYRQAA 347 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSS----------CCHHHHHHH-HSCEEECCCCCHHHH
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccC----------CcHHHHHHh-cCCEEEcceeEeCCC
Confidence 68999999999999776533332 345689999999999999853 246666666 78999999999997
Q ss_pred -ccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhhc
Q 000162 81 -PSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVE 159 (1987)
Q Consensus 81 -P~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~~ 159 (1987)
+.|..+++.. ..|.+.... ..+.|+...+ .+. .++.+.+++. +.
T Consensus 348 ~s~I~~~a~~i-~~g~~~~~~-----------------~d~~~~~~~~-~~~----------~~~~i~~~~~-----~~- 392 (574)
T 3e1s_A 348 KNPIIQAAHGL-LHGEAPAWG-----------------DKRLNLTEIE-PDG----------GARRVALMVR-----EL- 392 (574)
T ss_dssp TCHHHHHHHHH-HTTCCCCCC-----------------BTTEEEEECC-STT----------CHHHHHHHHH-----HT-
T ss_pred ccHHHHHHHHH-hCCCCcccC-----------------CCeEEEeCCC-HHH----------HHHHHHHHHh-----cc-
Confidence 6788876643 344322110 1334554411 111 1233433333 11
Q ss_pred ccCCccEEEEccCHHH---HHHHHHHhhhhhhcc----------------------------------------------
Q 000162 160 SKEKLSIGIVSPYSAQ---VIAIQEKLGSKYEKI---------------------------------------------- 190 (1987)
Q Consensus 160 ~~~~~sIgIITPY~aQ---v~~Ir~~L~~~~~~~---------------------------------------------- 190 (1987)
.+..++.|+||.+.. +..+...+++.+...
T Consensus 393 -~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l~v 471 (574)
T 3e1s_A 393 -GGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTV 471 (574)
T ss_dssp -TSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCEEE
T ss_pred -CcccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEEEE
Confidence 223688888887643 444444443322100
Q ss_pred --cCc-------------cEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEecccccccEEEEcchhhhc
Q 000162 191 --AGF-------------AVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRARHCLWILGSERTLN 254 (1987)
Q Consensus 191 --~~~-------------~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVALTRAK~~LiIVGn~~~L~ 254 (1987)
++. ...+.|||++||+|+|.||+.++... ..+.+++++|||+||||+.++|+|+...|.
T Consensus 472 ~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l~ 545 (574)
T 3e1s_A 472 DFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAWQ 545 (574)
T ss_dssp EETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHHH
T ss_pred EECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc-----ccccccceEEEEeeeeeeEEEEEECHHHHH
Confidence 000 01146999999999999999887543 346689999999999999999999987654
No 9
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.53 E-value=1.2e-14 Score=188.77 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=31.5
Q ss_pred cccCHHHHHhhcc-CCcEEEEcCCCCChhHHHHHHHH
Q 000162 512 FEVTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 512 I~l~~eQk~AI~~-~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
-.|+++|++||.. .++++|.||||||||||++.++.
T Consensus 8 ~~Ln~~Q~~av~~~~~~~lV~a~aGsGKT~~l~~ri~ 44 (647)
T 3lfu_A 8 DSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIA 44 (647)
T ss_dssp TTCCHHHHHHHTCCSSCEEEEECTTSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHH
Confidence 3689999999998 89999999999999999954444
No 10
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.52 E-value=2.1e-14 Score=189.60 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=31.4
Q ss_pred cccCHHHHHhhcc-CCcEEEEcCCCCChhHHHHHHHH
Q 000162 512 FEVTDEQLEMILF-PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 512 I~l~~eQk~AI~~-~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
-.|+++|++||.. .++++|+||||||||||++.++.
T Consensus 10 ~~Ln~~Q~~av~~~~g~~lV~AgAGSGKT~vL~~ri~ 46 (724)
T 1pjr_A 10 AHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIA 46 (724)
T ss_dssp TTSCHHHHHHHHCCSSCEEEEECTTSCHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHH
Confidence 3689999999999 88999999999999999954443
No 11
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.48 E-value=6.3e-14 Score=183.64 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=44.1
Q ss_pred eeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhhhhhhcccccccCcEEeccccccc
Q 000162 720 LVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNEAKHNVLCPELKQLYVAITRTRQR 799 (1987)
Q Consensus 720 ~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~ 799 (1987)
.++|||+|||||||+|+++++.++.. |......-..+..|++++||||||||++
T Consensus 553 ~l~TiH~sKGLEf~~Vfl~g~~eg~~--------------------------P~~~~~~~~~~~EErRL~YVA~TRAk~~ 606 (673)
T 1uaa_A 553 QLMTLHASKGLEFPYVYMVGMEEGFL--------------------------PHQSSIDEDNIDEERRLAYVGITRAQKE 606 (673)
T ss_dssp EEEESTTTSSCCEEEEEECCCBSSTT--------------------------TTHHHHTTTCCHHHHHHHHHHHHTEEEE
T ss_pred EEEeeeecccccCCEEEEecCcCCCC--------------------------CCcccCcchhHHHHHHHHHHHHHhhhhe
Confidence 58999999999999999988765421 1100000113567889999999999999
Q ss_pred chhccc
Q 000162 800 LWIWEN 805 (1987)
Q Consensus 800 LvIve~ 805 (1987)
|+|.-.
T Consensus 607 L~ls~~ 612 (673)
T 1uaa_A 607 LTFTLC 612 (673)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999653
No 12
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.46 E-value=1.4e-14 Score=159.15 Aligned_cols=133 Identities=14% Similarity=0.207 Sum_probs=87.8
Q ss_pred CcccCChhHHHHHHHHHHHHhhccCCCCccCCCCccccccCCCCeEeccCCcHHH---HHHHHhccCCCCCCccccCCcE
Q 000162 622 SQNFRTHVGVLNLAQSVIELLYRFFPHSVDILKPETSLIYGEPPVLLESGNDENA---IIKIFGNSGDAGGNMVGFGAEQ 698 (1987)
Q Consensus 622 t~NYRs~~~I~~LAn~VleLl~~~~p~~~d~l~~e~~v~~G~kP~~l~~~~~~n~---i~~i~~~~~~~~~~~i~fg~~~ 698 (1987)
+.||||+.+|+++|+.++.... . .....+.|++|.+....+..++ +...+.. .. .+ ..+.
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~-------~---~~~~~~~G~~p~~~~~~~~~~e~~~i~~~I~~-~~-----~g-~~~i 64 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGE-------A---VTAFDRQGDLPNVVVTPNFEAGVDQVVDQLAM-ND-----SE-RDTT 64 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC------------------CCCCCCEEEEESSHHHHHHHHHHHHHH-HH-----HT-TCCE
T ss_pred CCCCCChHHHHHHHHHHhcCCC-------c---ccCCCCCCCCCEEEEeCCHHHHHHHHHHHHHH-hc-----cC-CCcE
Confidence 5799999999999998764110 1 1222457999988866554432 3333222 10 01 2468
Q ss_pred EEEecChhHHHHHHhhhcCC-----------------ceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhh
Q 000162 699 VILVRDDCVRKEISNYVGKQ-----------------ALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQA 761 (1987)
Q Consensus 699 vIiVr~d~~k~~l~~~Lg~~-----------------a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~ 761 (1987)
+|+++++.....+.+.|... ..|+|+|.+||||||.||+++.....
T Consensus 65 AVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~----------------- 127 (174)
T 3dmn_A 65 AIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQEN----------------- 127 (174)
T ss_dssp EEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTT-----------------
T ss_pred EEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCccc-----------------
Confidence 89999997666665554222 34889999999999999998854311
Q ss_pred hccCCCCCCCCChhhhhhhcccccccCcEEecccccccchhcccc
Q 000162 762 LLDSTLPASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIWENM 806 (1987)
Q Consensus 762 ~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~~ 806 (1987)
+|. ..++++||||+||||++|+|+-..
T Consensus 128 ---------~~~---------~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 128 ---------YQR---------EDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp ---------SCS---------GGGHHHHHHHHTTEEEEEEEEEES
T ss_pred ---------CCC---------hhhhceeEEEecCcccEEEEEeCC
Confidence 111 245689999999999999998754
No 13
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.37 E-value=2.3e-13 Score=176.37 Aligned_cols=239 Identities=19% Similarity=0.188 Sum_probs=115.2
Q ss_pred CCcEEEEecCCCCChhhHhhhcc-CCCcceEEEEecCCCCCcccccccc------cccccCccHHHHHHhCC--------
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQ-LPCIQHAILVGDEVQLPAMVESSVS------GEAYFGRSLFERLSYLG-------- 67 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~-l~~~krlILVGD~kQLpPiV~s~~~------~~~gl~~SLFeRL~~~g-------- 67 (1987)
++|+||||||+|++.+.+...+. ++...++||+||+.||||+..+... ...++..+.++++....
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~~~ 341 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCCCS
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccccccc
Confidence 58999999999999775422222 3556899999999999999754321 13567788888887531
Q ss_pred ---CC-----ceecccccCCCcc--ccccccccccCCccccC--------ccc------cccc-----------ccc---
Q 000162 68 ---HP-----KHLLSMQYRMHPS--ISFFPNSYFYENKIRDA--------PTV------RKRS-----------YEK--- 109 (1987)
Q Consensus 68 ---~p-----~~~L~~QYRmhP~--Is~f~s~~FY~g~L~~~--------~~v------~~~~-----------~~~--- 109 (1987)
.| .+.|+++||++++ |..+.+.. ..|..... .+. .... +..
T Consensus 342 ~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (608)
T 1w36_D 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 (608)
T ss_dssp TTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSBCCBCCSTTTHHHHHHHHHHHTHHHHH
T ss_pred ccccccccccEEecceeeeeCCcchHHHHHHHH-hcCCchhHHHHhcCCCCceEEEecCChHHHHHHHHHHHHHHHHHHH
Confidence 12 5899999999876 77765432 22221100 000 0000 000
Q ss_pred ----ccCCCCC---CCCeEEE-EeCCCcccccccccCCHH---------------HHH-HHHHHHHHHHHHhhcccCCcc
Q 000162 110 ----RFLPGPM---YGPYSFI-NVFGGREEFIEHSCRNMV---------------EVS-VVMKILRNLYKAWVESKEKLS 165 (1987)
Q Consensus 110 ----~~l~~p~---~~pl~fi-dV~~g~E~~~~~S~~N~~---------------Ea~-~V~~lV~~L~~~~~~~~~~~s 165 (1987)
...+... ...+..+ ....|.- +....|.. +.. .+-+-|..+.+....+..+++
T Consensus 421 ~~~~~~~~~~~~~~~~~~~vL~~~~~g~~---gv~~lN~~i~~~l~~~~~~~~~~~~~~~~Gd~Vm~~~Nd~~~gl~NGd 497 (608)
T 1w36_D 421 LLQARAEPDLIIQAFNEYQLLCALREGPF---GVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 (608)
T ss_dssp HHHTCCCSSTTHHHHTTEEEEESCSSSSS---SHHHHHHHHHGGGTSCC-------------------------------
T ss_pred HhhcccCHHHHHHHHhhhhhhCCccCCch---hHHHHHHHHHHHhCccCcccccccccccCCCeeeEeeechhhcccCCC
Confidence 0000000 0112211 1111110 00001110 000 000111111112222345678
Q ss_pred EEEEccCHHHHHHHHHHhh---h---hh--hccc-CccEEEeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEe
Q 000162 166 IGIVSPYSAQVIAIQEKLG---S---KY--EKIA-GFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVA 236 (1987)
Q Consensus 166 IgIITPY~aQv~~Ir~~L~---~---~~--~~~~-~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVA 236 (1987)
||+|++...+ +.-.+. . .+ ...+ .....+.|||++||.|+|.||+....... -..+++.+|||
T Consensus 498 iG~V~~~~~~---l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~-----~~~~~~~~Yva 569 (608)
T 1w36_D 498 IGIALDRGQG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-----PVVTRELVYTA 569 (608)
T ss_dssp ----------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC-----SSSCHHHHHHH
T ss_pred eEEEEEcCCe---EEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCcc-----chhhhhhHHhh
Confidence 9999987522 111111 0 00 0111 12467999999999999999998754331 23478899999
Q ss_pred cccccccEEEEcchhhh
Q 000162 237 LTRARHCLWILGSERTL 253 (1987)
Q Consensus 237 LTRAK~~LiIVGn~~~L 253 (1987)
+||||+.++|+|+...|
T Consensus 570 ~tRa~~~l~l~~~~~~l 586 (608)
T 1w36_D 570 VTRARRRLSLYADERIL 586 (608)
T ss_dssp HTTBSSCEEEECCTTHH
T ss_pred hhhhhceEEEEECHHHH
Confidence 99999999999986544
No 14
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.33 E-value=1.6e-12 Score=160.73 Aligned_cols=199 Identities=20% Similarity=0.168 Sum_probs=125.0
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCCcceEEEEecCCCCCcccccccccccccCcc-HHHHHHhCCCCceecccccCCCc
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPCIQHAILVGDEVQLPAMVESSVSGEAYFGRS-LFERLSYLGHPKHLLSMQYRMHP 81 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~S-LFeRL~~~g~p~~~L~~QYRmhP 81 (1987)
++|+||||||+|++...+...+...+++++|++||+.||||+...+ ++... -|.++. ......+..+|||++
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~-----~~~~~~~~~~l~--~~~~~~~~~SyR~p~ 306 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVT-----GFPYPAHFAKLE--VDEVETRRTTLRCPA 306 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCST-----TCCCCHHHHSCC--CSEEEEECEESSCCH
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCC-----Cccchhhhhhcc--cCcEEEeeeEeCCCH
Confidence 3899999999999977664444444569999999999999996442 11111 122221 123466899999999
Q ss_pred cccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhhccc
Q 000162 82 SISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVESK 161 (1987)
Q Consensus 82 ~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~~~~ 161 (1987)
+++.+.+.. |++.+.+...+ ...+.+..+. +... .+. . ..
T Consensus 307 dv~~lLs~l-Y~~~V~t~s~~--------------~~sv~~~~I~-~~~~------~~~-----------------~-~~ 346 (446)
T 3vkw_A 307 DVTHFLNQR-YEGHVMCTSSE--------------KKSVSQEMVS-GAAS------INP-----------------V-SK 346 (446)
T ss_dssp HHHHHHHTT-SSSCCEECCCC--------------CCCEEEEECC-CGGG------CCT-----------------T-TS
T ss_pred HHHHHHHhh-cCCceEECCCc--------------CceEEEeccc-cccc------ccc-----------------c-cC
Confidence 999999875 77655422111 1234444441 1110 000 0 00
Q ss_pred CCccEEEEccCHHHHHHHHHHhhhhhhcccCccEE-EeccCCCCCcccCEEEEEecccCCCCcccCCCCCCceEEecccc
Q 000162 162 EKLSIGIVSPYSAQVIAIQEKLGSKYEKIAGFAVK-VKSIDGFQGGEEDIIIISTVRSNNTGSIGFASTPQRINVALTRA 240 (1987)
Q Consensus 162 ~~~sIgIITPY~aQv~~Ir~~L~~~~~~~~~~~V~-V~TVD~fQG~E~DVVIlS~Vrsn~~~~iGFL~d~nRLNVALTRA 240 (1987)
++ .--|||+..+.+..+.+. .+. +.|||++||.|+|.|.+.. .+..+...|..++.+++||+|||
T Consensus 347 ~~-~g~iLtftq~~k~~L~~~-----------G~~~~~Tv~e~QG~tf~~Vtlvr--~~~~~~~l~~~~~~~~~VALTRh 412 (446)
T 3vkw_A 347 PL-KGKILTFTQSDKEALLSR-----------GYADVHTVHEVQGETYADVSLVR--LTPTPVSIIARDSPHVLVSLSRH 412 (446)
T ss_dssp CC-CSEEEESSHHHHHHHHTT-----------TCCSCEETGGGTTCCEEEEEEEE--CCCSCCTTCSTTCHHHHHHHSSE
T ss_pred CC-CCeEEEcCHHHHHHHHHh-----------CCCCccCHHHcCCcccCeEEEEE--CCCCCcccccCCccceEEEeecC
Confidence 11 225778887777666432 123 7899999999999988743 33222233445788999999999
Q ss_pred cccEEEEcchhhhccCchHHHHHHHHHH
Q 000162 241 RHCLWILGSERTLNHSESVWESLLDDAK 268 (1987)
Q Consensus 241 K~~LiIVGn~~~L~~s~~~W~~Ll~~ak 268 (1987)
|+.|.++.-. +..|-..|.+..
T Consensus 413 ~~~L~~~tv~------~D~~~~~i~~~~ 434 (446)
T 3vkw_A 413 TKSLKYYTVV------MDPLVSIIRDLE 434 (446)
T ss_dssp EEEEEEEESS------CCHHHHHHHHHH
T ss_pred CCEEEEEEec------CChHHHHHHHhh
Confidence 9999988531 244555555543
No 15
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.32 E-value=2.8e-12 Score=170.31 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=54.7
Q ss_pred cEEEEecChhHHHHHHhhhc----------CCceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCC
Q 000162 697 EQVILVRDDCVRKEISNYVG----------KQALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDST 766 (1987)
Q Consensus 697 ~~vIiVr~d~~k~~l~~~Lg----------~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~ 766 (1987)
+.+||++.......+.+.+. ....|.|+|..||+|||+||+....+.. .
T Consensus 675 dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~--~------------------- 733 (800)
T 2wjy_A 675 QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANE--H------------------- 733 (800)
T ss_dssp GEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSC--C-------------------
T ss_pred cEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCC--c-------------------
Confidence 67899999877766655442 1346899999999999999995422100 0
Q ss_pred CCCCCCChhhhhhhcccccccCcEEecccccccchhccccc
Q 000162 767 LPASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIWENME 807 (1987)
Q Consensus 767 ~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~~~ 807 (1987)
.. ...+ .+.++||||+||||+.|+|+-+..
T Consensus 734 -----~~-----~gfl-~d~rrLNVAlTRAk~~LiIvG~~~ 763 (800)
T 2wjy_A 734 -----QG-----IGFL-NDPRRLNVALTRARYGVIIVGNPK 763 (800)
T ss_dssp -----CC-----CGGG-TCHHHHHHHHTSEEEEEEEEECHH
T ss_pred -----cc-----cccc-cCcchhhhhHHhhhccEEEEECHH
Confidence 00 0011 234789999999999999998754
No 16
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.29 E-value=2e-12 Score=162.30 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCcEEEEecCCCCChhhHhhhcc-CCCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCCC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQ-LPCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRMH 80 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~-l~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRmh 80 (1987)
.++++||||||++++....-..+. +....++++|||+.||||+..+.... .+ ..++. ..+.+.+.|+++||++
T Consensus 127 ~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~--~l-~~~~~---~~~~~~~~L~~~~R~~ 200 (459)
T 3upu_A 127 AKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTA--YI-SPFFT---HKDFYQCELTEVKRSN 200 (459)
T ss_dssp SSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSC--CC-CGGGT---CTTEEEEECCCCCCCC
T ss_pred cCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcchH--hH-HHHHh---cCCCcEEeceeeeeCC
Confidence 368999999999998655433322 33468999999999999997543111 01 11111 1356688999999999
Q ss_pred cccccccccccc
Q 000162 81 PSISFFPNSYFY 92 (1987)
Q Consensus 81 P~Is~f~s~~FY 92 (1987)
+.|.++++...-
T Consensus 201 ~~I~~~a~~lr~ 212 (459)
T 3upu_A 201 APIIDVATDVRN 212 (459)
T ss_dssp CHHHHHHHHHHT
T ss_pred cHHHHHHHHHHc
Confidence 999999987643
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.28 E-value=3.4e-10 Score=153.18 Aligned_cols=233 Identities=13% Similarity=0.161 Sum_probs=151.6
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--c---chhHHHHHhhhHHhh------------hhhhc----
Q 000162 833 AQAMQVASSPEEWKSRGIKLFYENNYEMATICFEKAKD--T---YWEGRSKATGLKAAS------------DHIRS---- 891 (1987)
Q Consensus 833 a~~la~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~---~la~la~A~~l~~aA------------~~l~s---- 891 (1987)
+-.++....|++--.....++..+.+.+|+.+|+|+-. . ....++.. +...| ..+..
T Consensus 976 a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl--Li~tAIkaD~~Rv~eyI~kLd~~d~~ 1053 (1630)
T 1xi4_A 976 QTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL--LILTAIKADRTRVMEYINRLDNYDAP 1053 (1630)
T ss_pred HhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH--HHHHHHHhChhhHHHHHHHhhhccHH
Confidence 34455577888888889999999999999999999742 1 11112221 11111 01100
Q ss_pred --CChHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 000162 892 --SNPLEANVILREAANIFEAIGKADSAAKCFY-DLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF 968 (1987)
Q Consensus 892 --~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~-kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd 968 (1987)
+......+.|+||..+|++++.+.+|+..+. ..|+|++|++++++......+.+.|+++++.|+|++|++.|+++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD 1133 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADD 1133 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 1112344669999999999999999877666 9999999999998865578899999999999999999999999987
Q ss_pred H---HHHHHHHHhcCChHHHHHHHHHhhhccc---ccchh---hhhhHHHHHHHHHH--------HHHHHHHHHhcCCHH
Q 000162 969 F---SECLAVCSRGELFDIGLQYINYWKQHVD---TDVGL---VRRSKEINKVEQDF--------LQSCALHYYQLNDKK 1031 (1987)
Q Consensus 969 ~---~kAIemy~kak~wd~AlrLi~qy~~~~e---~e~~~---~~ra~~a~~~a~~~--------le~cA~~ylklgD~~ 1031 (1987)
. .+.+..|.+.++|++|+++...-.+... .++.. +.+-..+.. ..+| +...+.+|...|+++
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI~~~n~ad~~~iGd~le~eg~Ye 1212 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFINGPNNAHIQQVGDRCYDEKMYD 1212 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHHhCCCHHHHHHHHHHHHhcCCHH
Confidence 5 4577899999999999999865333221 01000 000000111 1111 224566666666676
Q ss_pred HHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCC
Q 000162 1032 SMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGN 1068 (1987)
Q Consensus 1032 ~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~ 1068 (1987)
+|+.++.....|..++..+.+.|.+++|++.+.++++
T Consensus 1213 eA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1213 AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 6666666555555555555555555555555555444
No 18
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.25 E-value=1.1e-11 Score=161.31 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=54.7
Q ss_pred CcEEEEecChhHHHHHHhhhcC----------CceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccC
Q 000162 696 AEQVILVRDDCVRKEISNYVGK----------QALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDS 765 (1987)
Q Consensus 696 ~~~vIiVr~d~~k~~l~~~Lg~----------~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~ 765 (1987)
.+.+||++.......+.+.+.. ...|.|+|..||+|||+||+....+.. ..+
T Consensus 498 ~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~--------------~~~---- 559 (624)
T 2gk6_A 498 DQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANE--------------HQG---- 559 (624)
T ss_dssp GGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------------------------
T ss_pred CeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCC--------------CCC----
Confidence 3688999999777666554421 235889999999999999995422100 000
Q ss_pred CCCCCCCChhhhhhhcccccccCcEEecccccccchhccccc
Q 000162 766 TLPASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIWENME 807 (1987)
Q Consensus 766 ~~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~~~ 807 (1987)
...+ .+.++||||+||||+.|+|+-+..
T Consensus 560 -------------~gfl-~~~~rlnVAlTRAk~~L~ivg~~~ 587 (624)
T 2gk6_A 560 -------------IGFL-NDPRRLNVALTRARYGVIIVGNPK 587 (624)
T ss_dssp -------------CCTT-TCHHHHHHHTTSEEEEEEEEECHH
T ss_pred -------------cccc-CCcceeeeehhhhhCcEEEEECHH
Confidence 0011 234789999999999999998754
No 19
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.2e-11 Score=164.62 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=55.0
Q ss_pred cEEEEecChhHHHHHHhhhcC----------CceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCC
Q 000162 697 EQVILVRDDCVRKEISNYVGK----------QALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDST 766 (1987)
Q Consensus 697 ~~vIiVr~d~~k~~l~~~Lg~----------~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~ 766 (1987)
+.+||++.......+.+.+.. ...|.|+|..||+|||+||+....+...
T Consensus 677 ~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~--------------------- 735 (802)
T 2xzl_A 677 QIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQ--------------------- 735 (802)
T ss_dssp GEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTT---------------------
T ss_pred cEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCCC---------------------
Confidence 588999999877666554421 3468999999999999999844221100
Q ss_pred CCCCCCChhhhhhhcccccccCcEEecccccccchhccccc
Q 000162 767 LPASFPSFNEAKHNVLCPELKQLYVAITRTRQRLWIWENME 807 (1987)
Q Consensus 767 ~~s~~p~~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~~~ 807 (1987)
. ....+ .+.+.|||||||||+.|+|+-+..
T Consensus 736 -----~-----~~gfl-~d~rrLNVAlTRAk~~LiIvg~~~ 765 (802)
T 2xzl_A 736 -----Q-----AIGFL-RDPRRLNVGLTRAKYGLVILGNPR 765 (802)
T ss_dssp -----C-----CCGGG-GCHHHHHHHHSSEEEEEEEEECHH
T ss_pred -----C-----Ccccc-cCccceeeeHhhhhCeEEEEECHH
Confidence 0 00011 244789999999999999998754
No 20
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.14 E-value=6.4e-11 Score=153.98 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=97.6
Q ss_pred CCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHhC--CCCceecccccCC
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL--GHPKHLLSMQYRM 79 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~--g~p~~~L~~QYRm 79 (1987)
+|++|+|||+...+..+.-+...+ ....++++|||++|- +. ...|.....|.++... +...+.|+++||+
T Consensus 213 ~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~vGD~~Qs--Iy-----~frga~~~~~~~~~~~~~~~~~~~L~~nyRs 285 (647)
T 3lfu_A 213 RFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQS--IY-----GWRGAQVENIQRFLNDFPGAETIRLEQNYRS 285 (647)
T ss_dssp HCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEEEECGGGC--CC-----GGGTCCTTHHHHHHHHCTTCEEEEECBCSSS
T ss_pred hCCEEEEECcccCCHHHHHHHHHHhcCCCEEEEEcCchhh--hc-----cccCCCHHHHHHHHHhCCCCeEEEcccCCCC
Confidence 589999999999887765333222 245799999999992 21 2334456666666542 3457899999999
Q ss_pred CccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhhc
Q 000162 80 HPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVE 159 (1987)
Q Consensus 80 hP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~~ 159 (1987)
+|.|..++|..|+.+......... ...+...++.++... ....|++.|.+.+..+...+
T Consensus 286 ~~~I~~~~n~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----------~~~~e~~~ia~~I~~l~~~g-- 344 (647)
T 3lfu_A 286 TSNILSAANALIENNNGRLGKKLW--------TDGADGEPISLYCAF-----------NELDEARFVVNRIKTWQDNG-- 344 (647)
T ss_dssp CHHHHHHHHHHHTTCSSCCCCCCB--------CSSCCCCCEEEEEEE-----------EHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHhcccccCCccc--------cCCCCCCceEEEecC-----------ChHHHHHHHHHHHHHHHHcC--
Confidence 999999999998865432111110 001111234444331 13568999999999887654
Q ss_pred ccCCccEEEEccCHHHHHHH
Q 000162 160 SKEKLSIGIVSPYSAQVIAI 179 (1987)
Q Consensus 160 ~~~~~sIgIITPY~aQv~~I 179 (1987)
.+..+|+||++++.|...+
T Consensus 345 -~~~~diaVL~r~~~~~~~l 363 (647)
T 3lfu_A 345 -GALAECAILYRSNAQSRVL 363 (647)
T ss_dssp -CCGGGEEEEESSGGGHHHH
T ss_pred -CCccCEEEEEeCchhHHHH
Confidence 3567999999998775443
No 21
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.13 E-value=1e-10 Score=152.66 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=53.2
Q ss_pred cEEEEecChhHHHHHHhhhcC---CceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCC
Q 000162 697 EQVILVRDDCVRKEISNYVGK---QALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPS 773 (1987)
Q Consensus 697 ~~vIiVr~d~~k~~l~~~Lg~---~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~ 773 (1987)
+.+||++.......+.+.+.. ..-|-|||..||.|+|+||+ .+-.+.+ . ... .
T Consensus 532 dIgVItpYraQ~~~l~~~l~~~~~~i~v~TVd~fQG~E~dvII~-S~vrsn~--------------~--------~~i-G 587 (646)
T 4b3f_X 532 DIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVIL-SFVRSNR--------------K--------GEV-G 587 (646)
T ss_dssp GEEEEESCHHHHHHHHHHHTTTCTTCEEEEGGGGTTCCEEEEEE-ECCCCCT--------------T--------CCC-C
T ss_pred cEEEECCCHHHHHHHHHHHHHhCCCCEECChhhcccccCCEEEE-EeccCCC--------------C--------CCc-c
Confidence 578999999877666665532 23588999999999998877 2211000 0 000 0
Q ss_pred hhhhhhhcccccccCcEEecccccccchhccccc
Q 000162 774 FNEAKHNVLCPELKQLYVAITRTRQRLWIWENME 807 (1987)
Q Consensus 774 ~d~~~~~~L~~ELnLLYVAITRAKk~LvIve~~~ 807 (1987)
.+ .+.+.|.||+||||+.|||+-+..
T Consensus 588 -------Fl-~~~rRlNVAlTRAk~~liivGn~~ 613 (646)
T 4b3f_X 588 -------FL-AEDRRINVAVTRARRHVAVICDSR 613 (646)
T ss_dssp -------ST-TCHHHHHHHHHTEEEEEEEEECHH
T ss_pred -------cc-CCcCcEEeEhhhhhCeEEEEEchH
Confidence 11 123679999999999999997653
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.08 E-value=6.9e-09 Score=140.72 Aligned_cols=251 Identities=12% Similarity=0.042 Sum_probs=160.9
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccch-hHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHH-
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYW-EGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADS- 916 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~l-a~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dk- 916 (1987)
-..|..|.++|..++..|+|++|+.+|++|+|..- ..++.+ ....+.|++|.++|..+....+
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~---------------~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQA---------------ANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHH---------------HHHcCCHHHHHHHHHHHHhhccc
Confidence 57899999999999999999999999999988533 122211 1223456666666665443321
Q ss_pred ------HHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHH
Q 000162 917 ------AAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYIN 990 (1987)
Q Consensus 917 ------AAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~ 990 (1987)
=+.+|.+.++++. .+-|.+......+..+|+++++.|.|++|..+|.++++|.+++.+|.+.+++++|++.+.
T Consensus 1167 ~~Idt~LafaYAKl~rlee-le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1167 SYVETELIFALAKTNRLAE-LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred ccccHHHHHHHHhhcCHHH-HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2466777788775 444444344556778999999999999999999999999999999999999999999885
Q ss_pred Hhhhcc--------cccchhhhhhHHHHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHH--------HHHHHHh
Q 000162 991 YWKQHV--------DTDVGLVRRSKEINK---VEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMD--------LMRNFLK 1051 (1987)
Q Consensus 991 qy~~~~--------e~e~~~~~ra~~a~~---~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d--------~aa~fL~ 1051 (1987)
+-.... ..+.+-++.|..... ...++++..+.+|.+.|.+++|+..+..--..+ +.+..+.
T Consensus 1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 321110 000011111111110 122345566777777888877777775431211 1111111
Q ss_pred --hcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1052 --SKSCFDELLVLEEEAGNFMDAANIARLTGDILLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1052 --k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
+.+.+.|+++++...++...-.+.+.+.--|..++-+|.+.|+|+.|...++.|
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 234455555555555554444444444455777788888888898888765554
No 23
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=98.97 E-value=5.3e-10 Score=122.74 Aligned_cols=144 Identities=18% Similarity=0.134 Sum_probs=97.5
Q ss_pred ccccCCCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHH
Q 000162 74 SMQYRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNL 153 (1987)
Q Consensus 74 ~~QYRmhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L 153 (1987)
+++||++++|.+++|..+.++. .... . ...++ +..++...+ ...|+..+.+.+..
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~-----~~~~--~---~~~G~---~p~~~~~~~-----------~~~e~~~i~~~I~~- 56 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGE-----AVTA--F---DRQGD---LPNVVVTPN-----------FEAGVDQVVDQLAM- 56 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC------------------CCCC---CCEEEEESS-----------HHHHHHHHHHHHHH-
T ss_pred CCCCCChHHHHHHHHHHhcCCC-----cccC--C---CCCCC---CCEEEEeCC-----------HHHHHHHHHHHHHH-
Confidence 5799999999999997765432 0100 0 00111 223333311 14578888888876
Q ss_pred HHHhhcccCCccEEEEccCHHHHHHHHHHhhhh-hh--------cccCccEEEeccCCCCCcccCEEEEEecccCCCCcc
Q 000162 154 YKAWVESKEKLSIGIVSPYSAQVIAIQEKLGSK-YE--------KIAGFAVKVKSIDGFQGGEEDIIIISTVRSNNTGSI 224 (1987)
Q Consensus 154 ~~~~~~~~~~~sIgIITPY~aQv~~Ir~~L~~~-~~--------~~~~~~V~V~TVD~fQG~E~DVVIlS~Vrsn~~~~i 224 (1987)
... ...+||||++.+.|...+.+.|... .+ ......|.|.|+|.++|.|+|.||+..+.....
T Consensus 57 ~~~-----g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~~--- 128 (174)
T 3dmn_A 57 NDS-----ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENY--- 128 (174)
T ss_dssp HHH-----TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTTS---
T ss_pred hcc-----CCCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCcccC---
Confidence 332 2579999999999999999998653 11 011236999999999999999999887644321
Q ss_pred cCCCCCCceEEecccccccEEEEcch
Q 000162 225 GFASTPQRINVALTRARHCLWILGSE 250 (1987)
Q Consensus 225 GFL~d~nRLNVALTRAK~~LiIVGn~ 250 (1987)
....+.+++|||+||||+.|+|++..
T Consensus 129 ~~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 129 QREDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp CSGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred CChhhhceeEEEecCcccEEEEEeCC
Confidence 12456888999999999999999753
No 24
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=98.85 E-value=2.8e-09 Score=141.01 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=93.1
Q ss_pred CCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHh--CCCCceecccccCC
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY--LGHPKHLLSMQYRM 79 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~--~g~p~~~L~~QYRm 79 (1987)
+|++|+|||+...+..+.-+.-.+ ....++++|||+.|- |. ...|.+...+.++.. .+...+.|.++||+
T Consensus 216 rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~Qs--IY-----~fRGA~~~~~~~f~~~~~~~~~i~L~~NyRS 288 (724)
T 1pjr_A 216 KFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQS--IY-----RWRGADIQNILSFERDYPNAKVILLEQNYRS 288 (724)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGGGC--CC-----GGGTCCTHHHHTHHHHSTTCEEEEECBCSSS
T ss_pred hCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEEEEECchhh--cc-----cccCCCHHHHHHHHHHCCCCcEEECCCCCCC
Confidence 589999999999988764333222 223689999999993 22 122334444444432 13457899999999
Q ss_pred CccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhhc
Q 000162 80 HPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWVE 159 (1987)
Q Consensus 80 hP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~~ 159 (1987)
+|.|.+++|..+..+.-...... +...+...++.++... ....|+..|...+..+... .
T Consensus 289 t~~Il~~an~li~~n~~~~~k~l--------~~~~~~g~~i~~~~~~-----------~~~~Ea~~va~~I~~l~~~--~ 347 (724)
T 1pjr_A 289 TKRILQAANEVIEHNVNRKPKRI--------WTENPEGKPILYYEAM-----------NEADEAQFVAGRIREAVER--G 347 (724)
T ss_dssp CHHHHHHHHHHHTTCSSCCCCCC--------BCSSCCCCCEEEEEEE-----------EHHHHHHHHHHHHHHHHTT--T
T ss_pred CHHHHHHHHHHHHhCccccCccc--------ccccCCCCceEEEecC-----------CHHHHHHHHHHHHHHHHHh--c
Confidence 99999999988865432211110 0011111244444331 1256888888888887652 1
Q ss_pred ccCCccEEEEccCHHHHHHHHH
Q 000162 160 SKEKLSIGIVSPYSAQVIAIQE 181 (1987)
Q Consensus 160 ~~~~~sIgIITPY~aQv~~Ir~ 181 (1987)
+.+..+|+|+++.++|...+.+
T Consensus 348 g~~~~diAIL~R~~~~~~~le~ 369 (724)
T 1pjr_A 348 ERRYRDFAVLYRTNAQSRVMEE 369 (724)
T ss_dssp SCCGGGEEEEESSGGGHHHHHH
T ss_pred CCChhheeeeeecchhHHHHHH
Confidence 2356789999888877655443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.84 E-value=1.2e-08 Score=126.49 Aligned_cols=233 Identities=13% Similarity=0.085 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhH-HHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCH--H
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEG-RSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKA--D 915 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~-la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~--d 915 (1987)
-.+|+.|..+|..+++.|++++|+++|+|+.|+..-. +..++ +..+.|++|..+|..+-+. +
T Consensus 29 ~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~a---------------e~~g~~EeAi~yl~~ark~~~~ 93 (449)
T 1b89_A 29 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAA---------------NTSGNWEELVKYLQMARKKARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH---------------HhCCCHHHHHHHHHHHHHhCcc
Confidence 3678899999999999999999999999998854211 11111 1133444444433322210 1
Q ss_pred HHHH-----HHHHhCCHHHHHHHHHHhcC--------------------------hhHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 916 SAAK-----CFYDLGEYERAGKIYEERCG--------------------------KPELEKAGECFFLAGQYKHAAEVYA 964 (1987)
Q Consensus 916 kAAk-----~y~kaGdyekA~eLy~e~~~--------------------------~~ll~~aAe~fE~agqy~kAAeLYe 964 (1987)
.++. ||.++|+|.++.+++.. .+ -+.+.+.|.++...|+|+.|.+.|.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~~-pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFING-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ---------------CHHHHTTTTTC-C----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHH
Confidence 1223 55555555554444332 11 1345555555555555555555555
Q ss_pred hcCCH---HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 000162 965 RGNFF---SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFH 1041 (1987)
Q Consensus 965 KaGd~---~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~ 1041 (1987)
++++. ..++.+|...++|+.|...... ... -.+.+..+...|.+.|.+++|+.+++.--
T Consensus 173 KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----L~~--------------~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 173 KANSTRTWKEVCFACVDGKEFRLAQMCGLH----IVV--------------HADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHTCHHHHHHHHHHHHHTTCHHHHHHTTTT----TTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HcCCchhHHHHHHHHHHcCcHHHHHHHHHH----HHh--------------CHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55555 4455555555555555322210 000 00123344566777777777776666422
Q ss_pred cHH--------HHHHHHh--hcCCHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1042 SMD--------LMRNFLK--SKSCFDELLVLEEEAGNFMDAANIARLTGDILLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1042 s~d--------~aa~fL~--k~~~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
..| +.+-.+. +.+.+.|.++++...=+...-.+.+.+.--|...+-+|.+-|+||.|...++.|
T Consensus 235 ~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 235 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 221 1111111 244455555555555555555555555666666666777777777777765554
No 26
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=98.83 E-value=3.2e-09 Score=139.27 Aligned_cols=145 Identities=14% Similarity=0.022 Sum_probs=88.7
Q ss_pred CCCcEEEEecCCCCChhhHhhhccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHh--CCCCceecccccC
Q 000162 2 EQLKFVVIDEAAQLKESESAIPLQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSY--LGHPKHLLSMQYR 78 (1987)
Q Consensus 2 ~~fDlVIIDEASQ~~E~e~LipL~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~--~g~p~~~L~~QYR 78 (1987)
.+|++|+|||+...+..+.-+.-.+ ....++++|||++|- |. ...|.....|.++.. .+...+.|+++||
T Consensus 206 ~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l~~vGD~~Qs--Iy-----~frga~~~~~~~~~~~~~~~~~~~L~~nyR 278 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQS--IY-----SWRGARPQNLVLLSQDFPALKVIKLEQNYR 278 (673)
T ss_dssp TTCSEEEESCGGGCBHHHHHHHHHHHTTTCCEEEECCGGGC--CC-----GGGTBCTTHHHHHHHHSTTCEEECCCCBSS
T ss_pred hhCcEEEEeccccCCHHHHHHHHHHhcCCCeEEEEeCchhh--hh-----hccCCCHHHHHHHHHhCCCCeEEECCCCCC
Confidence 4789999999999887765332222 234689999999993 21 223444556666544 2445788999999
Q ss_pred CCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHHhh
Q 000162 79 MHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKAWV 158 (1987)
Q Consensus 79 mhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~~~ 158 (1987)
++|.|.+++|..|..+.-...... +...+...++.++.. . ....|++.|...+..+....
T Consensus 279 s~~~I~~~an~~~~~~~~~~~~~l--------~~~~~~g~~i~~~~~-~----------~~~~e~~~va~~I~~l~~~~- 338 (673)
T 1uaa_A 279 SSGRILKAANILIANNPHVFEKRL--------FSELGYGAELKVLSA-N----------NEEHEAERVTGELIAHHFVN- 338 (673)
T ss_dssp SCHHHHHHHHHHHHTSCCSSCCCC--------CBSSCCCCCBEEEEC-S----------SHHHHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHHHHHHHHhchhcccccc--------cccCCCCCCceEEec-C----------CHHHHHHHHHHHHHHHHhcc-
Confidence 999999999988865432110000 000011123444433 1 12568888888888876321
Q ss_pred cccCCccEEEEccCHH
Q 000162 159 ESKEKLSIGIVSPYSA 174 (1987)
Q Consensus 159 ~~~~~~sIgIITPY~a 174 (1987)
+.+..+|+|+++.+.
T Consensus 339 -g~~~~diaVL~r~~~ 353 (673)
T 1uaa_A 339 -KTQYKDYAILYRGNH 353 (673)
T ss_dssp -CCCTTTEEEEESSSG
T ss_pred -CCCccCEEEEEechh
Confidence 235567888876543
No 27
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.52 E-value=3.7e-05 Score=97.04 Aligned_cols=162 Identities=12% Similarity=0.046 Sum_probs=90.2
Q ss_pred hCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCCHHHHHHHHHhc--------CCHHHHHHHHHhcCChHHHHHHHHH
Q 000162 924 LGEYERAGKIYEERCG----KPELEKAGECFFLAGQYKHAAEVYARG--------NFFSECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~----~~ll~~aAe~fE~agqy~kAAeLYeKa--------Gd~~kAIemy~kak~wd~AlrLi~q 991 (1987)
.|++++|.+++.+... ...+...|..+.+.|++++|.++|.++ .-+...+.+|.+.+++++|.++.++
T Consensus 285 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3555666666655322 244667777777888888888877765 2234556677777777777777755
Q ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHH
Q 000162 992 WKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMD 1071 (1987)
Q Consensus 992 y~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~E 1071 (1987)
..+....+ .......+..|.+.|++++|++.+...-..+. ....-+...+..+.+.|++++
T Consensus 365 ~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 365 LVDRHPEK--------------AVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-----QFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHCTTS--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhhCccc--------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHH
Confidence 43321111 01112235677788888888877664211100 000012334556666677777
Q ss_pred HHHHHHHc----C-C---HHHHHHHHHHcCCHHHHHHHHHH
Q 000162 1072 AANIARLT----G-D---ILLTADLLQKAGNFKEACNLTLN 1104 (1987)
Q Consensus 1072 A~~iAkq~----G-d---~l~Aae~L~kAg~fdeA~rL~l~ 1104 (1987)
|.+.+.+. . + +..-+..+.+.|++++|...+-.
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76666542 1 1 12225556666777777665443
No 28
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.50 E-value=2.3e-06 Score=112.42 Aligned_cols=141 Identities=11% Similarity=-0.008 Sum_probs=104.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 915 DSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 915 dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
....++....|+++.|.++++....+..++++|+.+.+.++++.|+++|.++++++++..+|...++.+++.+++
T Consensus 656 ~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~----- 730 (814)
T 3mkq_A 656 DQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLA----- 730 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHH-----
T ss_pred chheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHH-----
Confidence 344567788999999999988876788999999999999999999999999999999999988777766544443
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHH
Q 000162 995 HVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAAN 1074 (1987)
Q Consensus 995 ~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~ 1074 (1987)
......|++..|. ..+.+.|++++|++++.+.++|++|+.
T Consensus 731 ---------------------------~~a~~~~~~~~A~-------------~~~~~~g~~~~a~~~~~~~~~~~~A~~ 770 (814)
T 3mkq_A 731 ---------------------------KDAETTGKFNLAF-------------NAYWIAGDIQGAKDLLIKSQRFSEAAF 770 (814)
T ss_dssp ---------------------------HHHHHTTCHHHHH-------------HHHHHHTCHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------------HHHHHcCchHHHH-------------HHHHHcCCHHHHHHHHHHcCChHHHHH
Confidence 1222344443332 233346788888888889999999999
Q ss_pred HHHHcCCHH--------HHHHHHHHcCCHHHHHH
Q 000162 1075 IARLTGDIL--------LTADLLQKAGNFKEACN 1100 (1987)
Q Consensus 1075 iAkq~Gd~l--------~Aae~L~kAg~fdeA~r 1100 (1987)
+|++++... +-++.|...|+.+.|..
T Consensus 771 lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~ 804 (814)
T 3mkq_A 771 LGSTYGLGDNEVNDIVTKWKENLILNGKNTVSER 804 (814)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTT
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHhccchhHHHh
Confidence 999887544 22555556677655543
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.47 E-value=2.3e-05 Score=90.85 Aligned_cols=251 Identities=12% Similarity=0.024 Sum_probs=145.2
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhccc--chhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHc---CC
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDT--YWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAI---GK 913 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~--~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~---G~ 913 (1987)
..++.-|..+|..+...|+|+.|..+|.++-.. .........+. .....+.+.+|...|.++ ..
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH-----------LLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHTCHHHHHHHHHHHHTSCC
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH-----------HHHHcCChHHHHHHHHHHHhcCC
Confidence 356788999999999999999999999886431 11100000000 001122233333333322 11
Q ss_pred ----H----------------HHHHHHHHHhCCHHHHHHHHHHhc-----ChhHHHHHHHHHHHcCCHHHHHHHHHhcC-
Q 000162 914 ----A----------------DSAAKCFYDLGEYERAGKIYEERC-----GKPELEKAGECFFLAGQYKHAAEVYARGN- 967 (1987)
Q Consensus 914 ----~----------------dkAAk~y~kaGdyekA~eLy~e~~-----~~~ll~~aAe~fE~agqy~kAAeLYeKaG- 967 (1987)
. -.-+.++...|++++|++++.+.. ....+...|.++...|++++|.+.|.++-
T Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 011456666666666666665521 13557889999999999999999999871
Q ss_pred ----C---HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 000162 968 ----F---FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQD--FLQSCALHYYQLNDKKSMMKFVK 1038 (1987)
Q Consensus 968 ----d---~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~--~le~cA~~ylklgD~~~Am~~vk 1038 (1987)
+ +-....+|...+++++|....++..+........ ......... -.-..+..+...|+++.|+..+.
T Consensus 183 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC----FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHH----HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2344557788899999999887654432221111 111111000 01123667888999999998877
Q ss_pred HhccHHHH-HHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc----C-C---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 000162 1039 AFHSMDLM-RNFLKSKSCFDELLVLEEEAGNFMDAANIARLT----G-D---ILLTADLLQKAGNFKEACNLTLNYV 1106 (1987)
Q Consensus 1039 ~~~s~d~a-a~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~----G-d---~l~Aae~L~kAg~fdeA~rL~l~~~ 1106 (1987)
..-..... ..+. ...+......+...|++++|...+.+. + + +..-+..+...|++++|...+..-.
T Consensus 259 ~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 259 SVMKTEPSVAEYT--VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHCCSSHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCCchHHH--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42211100 0000 011223456778888888888887764 2 1 2233777888899999998855443
No 30
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.47 E-value=4.1e-06 Score=110.08 Aligned_cols=150 Identities=11% Similarity=-0.028 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
+..-...+..+.+.+.++.|......... ...++...+..+.|..+...- .....+.++|+++.+.|+++.|++||
T Consensus 629 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y 704 (814)
T 3mkq_A 629 KDSLTKIARFLEGQEYYEEALNISPDQDQ--KFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAF 704 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCCHHH--HHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChHHheecCCCcch--heehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHH
Confidence 55557777888888888888766532211 111222222222222221110 01357899999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 000162 922 YDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
.++|+|+.+..+|....+.+.+.++|+..+..|++..|..+|.+.|++++|++||.+.++|++|+.++++|...
T Consensus 705 ~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~ 778 (814)
T 3mkq_A 705 TNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLG 778 (814)
T ss_dssp HHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCC
Confidence 99999999999998867778899999999999999999999999999999999999999999999999877653
No 31
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=98.38 E-value=4e-07 Score=126.49 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=56.1
Q ss_pred CCcEEEEecCCCCChhhHhhh--ccC-CCcceEEEEecCCCCCcccccccccccccCccHHHHHHhCCCCceecccccCC
Q 000162 3 QLKFVVIDEAAQLKESESAIP--LQL-PCIQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYLGHPKHLLSMQYRM 79 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~Lip--L~l-~~~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~g~p~~~L~~QYRm 79 (1987)
+|++|+|||+...+..+.-+. +.. .+...+++|||++| .|.. ..|.+...|.+........+.|.++||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQ--SIY~-----FRGAd~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ--AIYA-----FRGADIFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGG--CCCG-----GGTCCHHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCcc--cccc-----CcCCCHHHHHHHHHhcCCceeCCCCcCC
Confidence 489999999999998775333 322 13468999999999 2221 1111222232332222457889999999
Q ss_pred CccccccccccccC
Q 000162 80 HPSISFFPNSYFYE 93 (1987)
Q Consensus 80 hP~Is~f~s~~FY~ 93 (1987)
+|.|.+++|..|-.
T Consensus 450 ~~~Il~~~N~lf~~ 463 (1180)
T 1w36_B 450 APGMVNSVNKLFSQ 463 (1180)
T ss_dssp CHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhc
Confidence 99999999987754
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2e-05 Score=87.19 Aligned_cols=219 Identities=11% Similarity=0.062 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
..+.|..+|..++..|+|+.|..+|.++-... .+ ...+...+..|...|++++|+++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------------------~~----~~~~~~~~~~~~~~~~~~~A~~~ 60 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-------------------KD----ITYLNNRAAAEYEKGEYETAIST 60 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------------CC----THHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-------------------cc----HHHHHHHHHHHHHcccHHHHHHH
Confidence 35678999999999999999999999764321 00 12456778889999999999999
Q ss_pred HHHhCCHHHHHHHHHHhc-C----hhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 000162 921 FYDLGEYERAGKIYEERC-G----KPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~-~----~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
| ++|+++..... . ...+...|.++...|++++|.+.|.++-....-..++.+.+++++|.+..++....
T Consensus 61 ~------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 61 L------NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp H------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred H------HHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHc
Confidence 8 56677655421 1 24577899999999999999999998744444456777888888888888654432
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHH
Q 000162 996 VDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANI 1075 (1987)
Q Consensus 996 ~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~i 1075 (1987)
... ........+..|...|+++.|+..+...-..+. .....+-.....+...|++++|...
T Consensus 135 ~~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 135 NPE--------------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp CHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred Ccc--------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 111 011223446778889999999988774322110 0011233456677788888888887
Q ss_pred HHHc----CC----HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000162 1076 ARLT----GD----ILLTADLLQKAGNFKEACNLTLNYVL 1107 (1987)
Q Consensus 1076 Akq~----Gd----~l~Aae~L~kAg~fdeA~rL~l~~~~ 1107 (1987)
+.+. ++ +..-+..+.+.|++++|...+.....
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7764 22 22337777888999998887655443
No 33
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.36 E-value=4e-05 Score=96.67 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAK 869 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAg 869 (1987)
...-|..+|..+.+.|++++|.++|.++-
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678999999999999999999999864
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.33 E-value=1.2e-05 Score=99.99 Aligned_cols=276 Identities=12% Similarity=0.081 Sum_probs=142.8
Q ss_pred HHHHhhhhhHHhccChHH-HHHhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccc--------hhHHHHHhhhHHh
Q 000162 815 DYWKKRLLVQVRQLDDSL-AQAMQVASSPEEWKSRGIKLFYENNYEMATICFEKAKDTY--------WEGRSKATGLKAA 885 (1987)
Q Consensus 815 ~ywek~~Lvev~~~de~l-a~~la~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~--------la~la~A~~l~~a 885 (1987)
..|..++-........+. .+......++..|...+..+...|+|++|.+.|..+-... +...-...+...+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e 112 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 112 (449)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHH
Confidence 366665433333222211 2222334577788899999999999999999887765421 1000011122222
Q ss_pred hhhhhc----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCC
Q 000162 886 SDHIRS----------SNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQ 955 (1987)
Q Consensus 886 A~~l~s----------~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agq 955 (1987)
+..+.. ++.....+.|++|..+|.++..+.+=+.|+.++|+|+.|++.|++......+.++...+...|+
T Consensus 113 ~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 113 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 192 (449)
T ss_dssp HTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCc
Confidence 222221 1112244669999999999999999999999999999999999997666778999999999999
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHH
Q 000162 956 YKHAAEVYARG----NFFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKK 1031 (1987)
Q Consensus 956 y~kAAeLYeKa----Gd~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~ 1031 (1987)
|+.|..++.+. .+...++++|.+.|.|++|+.++++-.....+..++ |.+ .+..|.++ .++
T Consensus 193 f~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~-------------fte-l~il~~ky-~p~ 257 (449)
T 1b89_A 193 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM-------------FTE-LAILYSKF-KPQ 257 (449)
T ss_dssp HHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH-------------HHH-HHHHHHTT-CHH
T ss_pred HHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHH-------------HHH-HHHHHHhc-CHH
Confidence 99997766543 344678889999999999999997654443332222 111 25566665 577
Q ss_pred HHHHHHHHhccHH---HHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHcC----CHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 1032 SMMKFVKAFHSMD---LMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLTG----DILLTADLLQKAGNFKEACNLTLN 1104 (1987)
Q Consensus 1032 ~Am~~vk~~~s~d---~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~G----d~l~Aae~L~kAg~fdeA~rL~l~ 1104 (1987)
.+|+.++.|.+-- ...+.+.....+.+++-+|...+.|+.|+..+.+|. +...--+...+-.+.+=..+..-+
T Consensus 258 k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~f 337 (449)
T 1b89_A 258 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 337 (449)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHH
Confidence 7888777655432 244556678888999999999999999999888884 233334444444444444444444
Q ss_pred H
Q 000162 1105 Y 1105 (1987)
Q Consensus 1105 ~ 1105 (1987)
|
T Consensus 338 y 338 (449)
T 1b89_A 338 Y 338 (449)
T ss_dssp H
T ss_pred H
Confidence 4
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.28 E-value=7.8e-05 Score=90.36 Aligned_cols=251 Identities=12% Similarity=0.035 Sum_probs=146.9
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhccc--chhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcC----
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDT--YWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIG---- 912 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~--~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G---- 912 (1987)
..++.-|..+|..++..|+++.|..+|.++-.. .........+. . ....+.+++|.+.|.++-
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-----~------~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH-----L------LLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-----H------HHHTTCHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH-----H------HHHcCCHHHHHHHHHHHHhcCC
Confidence 346888999999999999999999999986431 11100000000 0 011122333333333210
Q ss_pred C-------------------HHHHHHHHHHhCCHHHHHHHHHHhc-----ChhHHHHHHHHHHHcCCHHHHHHHHHhc--
Q 000162 913 K-------------------ADSAAKCFYDLGEYERAGKIYEERC-----GKPELEKAGECFFLAGQYKHAAEVYARG-- 966 (1987)
Q Consensus 913 ~-------------------~dkAAk~y~kaGdyekA~eLy~e~~-----~~~ll~~aAe~fE~agqy~kAAeLYeKa-- 966 (1987)
. .-..+.+|...|+|++|+++|.+.. ....+...|.++...|++++|.++|.++
T Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 205 (450)
T 2y4t_A 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 0111445667777777777766521 1355778999999999999999999987
Q ss_pred ---CC---HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 000162 967 ---NF---FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQD--FLQSCALHYYQLNDKKSMMKFVK 1038 (1987)
Q Consensus 967 ---Gd---~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~--~le~cA~~ylklgD~~~Am~~vk 1038 (1987)
++ +.....+|...+++++|+.+.++..+........ ......... -....+..|.+.|+++.|+..+.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC----FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22 2344567888999999999887654432221111 001100000 01223677888999999998877
Q ss_pred HhccHHH-HHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc----CC----HHHHHHHHHHcCCHHHHHHHHHHHH
Q 000162 1039 AFHSMDL-MRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT----GD----ILLTADLLQKAGNFKEACNLTLNYV 1106 (1987)
Q Consensus 1039 ~~~s~d~-aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~----Gd----~l~Aae~L~kAg~fdeA~rL~l~~~ 1106 (1987)
..-.... -..+. ...+.....++.+.|++++|...+.+. ++ +..-+..+...|++++|...+....
T Consensus 282 ~~l~~~p~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 282 SVMKTEPSIAEYT--VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHCCSSHHHH--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4311110 00000 012334567788889999998887764 22 2233777888899999999865543
No 36
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=98.27 E-value=9.7e-07 Score=109.58 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=47.6
Q ss_pred EEEecChhHHHHHHhhhcCCceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhhhh
Q 000162 699 VILVRDDCVRKEISNYVGKQALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNEAK 778 (1987)
Q Consensus 699 vIiVr~d~~k~~l~~~Lg~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~ 778 (1987)
.||+.+.+++..+... | ..-+.|+|++||+|||.|.++-... .|. +
T Consensus 351 ~iLtftq~~k~~L~~~-G-~~~~~Tv~e~QG~tf~~Vtlvr~~~-~~~-------------------------~------ 396 (446)
T 3vkw_A 351 KILTFTQSDKEALLSR-G-YADVHTVHEVQGETYADVSLVRLTP-TPV-------------------------S------ 396 (446)
T ss_dssp EEEESSHHHHHHHHTT-T-CCSCEETGGGTTCCEEEEEEEECCC-SCC-------------------------T------
T ss_pred eEEEcCHHHHHHHHHh-C-CCCccCHHHcCCcccCeEEEEECCC-CCc-------------------------c------
Confidence 4678788777666553 2 1127999999999999999974211 000 0
Q ss_pred hhcccccccCcEEecccccccchhccc
Q 000162 779 HNVLCPELKQLYVAITRTRQRLWIWEN 805 (1987)
Q Consensus 779 ~~~L~~ELnLLYVAITRAKk~LvIve~ 805 (1987)
.+......+|||+||||+.|.++--
T Consensus 397 --l~~~~~~~~~VALTRh~~~L~~~tv 421 (446)
T 3vkw_A 397 --IIARDSPHVLVSLSRHTKSLKYYTV 421 (446)
T ss_dssp --TCSTTCHHHHHHHSSEEEEEEEEES
T ss_pred --cccCCccceEEEeecCCCEEEEEEe
Confidence 0011125699999999999988764
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.26 E-value=0.00015 Score=86.79 Aligned_cols=191 Identities=13% Similarity=0.028 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCC-----------------HHH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG----KPELEKAGECFFLAGQ-----------------YKH 958 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~----~~ll~~aAe~fE~agq-----------------y~k 958 (1987)
.+...+.+|...|++++|.++| ++|.+++.+..+ ...+...|.++...|+ |++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICC------ERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 3445555666666666666665 444444443222 1246678888888888 888
Q ss_pred HHHHHHhc-------CC-------HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 000162 959 AAEVYARG-------NF-------FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHY 1024 (1987)
Q Consensus 959 AAeLYeKa-------Gd-------~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~y 1024 (1987)
|.++|.++ ++ +.....+|...+++++|.++.++..+...... ...... ..+...+..|
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~-~~~~~la~~~ 273 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG-------DRAAER-RANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------CHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC-------CcHHHH-HHHHHHHHHH
Confidence 88777665 21 12233456677788877777654322111000 000011 1233446678
Q ss_pred HhcCCHHHHHHHHHHhccHHHHH-HHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc-------CCH-------HHHHHHH
Q 000162 1025 YQLNDKKSMMKFVKAFHSMDLMR-NFLKSKSCFDELLVLEEEAGNFMDAANIARLT-------GDI-------LLTADLL 1089 (1987)
Q Consensus 1025 lklgD~~~Am~~vk~~~s~d~aa-~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~-------Gd~-------l~Aae~L 1089 (1987)
...|+++.|++.+...-...... ........+.....++...|++++|...+++. ++. ..-+..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 88899998888776422211100 00000112233456666777777776666553 221 1124455
Q ss_pred HHcCCHHHHHHHHHH
Q 000162 1090 QKAGNFKEACNLTLN 1104 (1987)
Q Consensus 1090 ~kAg~fdeA~rL~l~ 1104 (1987)
...|++++|...+..
T Consensus 354 ~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 354 SAIGGHERALKYAEQ 368 (411)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHH
Confidence 556777666665433
No 38
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.24 E-value=7.9e-05 Score=86.88 Aligned_cols=169 Identities=17% Similarity=0.112 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 000162 847 SRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGE 926 (1987)
Q Consensus 847 klA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGd 926 (1987)
+.|..+...|+|+.|+.+|.+|-.... ...++......+..++.+|.+.|++++|+.+|
T Consensus 42 ~a~~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~----- 100 (292)
T 1qqe_A 42 QAATIYRLRKELNLAGDSFLKAADYQK----------------KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL----- 100 (292)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHH----------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH----------------HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH-----
Confidence 334555556777777777776544211 01223333456778888888888888888887
Q ss_pred HHHHHHHHHHhcC----hhHHHHHHHHHHHc-CCHHHHHHHHHhcCC--------------HHHHHHHHHhcCChHHHHH
Q 000162 927 YERAGKIYEERCG----KPELEKAGECFFLA-GQYKHAAEVYARGNF--------------FSECLAVCSRGELFDIGLQ 987 (1987)
Q Consensus 927 yekA~eLy~e~~~----~~ll~~aAe~fE~a-gqy~kAAeLYeKaGd--------------~~kAIemy~kak~wd~Alr 987 (1987)
++|++++.+.++ ...+...|..|... |++++|.++|.++-. +.....+|.+.+++++|+.
T Consensus 101 -~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 101 -ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 677777766433 13477889999996 999999998888722 2233557788899999998
Q ss_pred HHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHH
Q 000162 988 YINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMD 1044 (1987)
Q Consensus 988 Li~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d 1044 (1987)
+.++..+........ ......++...+.+|...|+++.|+..+...-..+
T Consensus 180 ~~~~al~~~~~~~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 180 IYSKLIKSSMGNRLS-------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HHHHHHHTTSSCTTT-------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHhcCCcc-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 887654432211110 00112234455778899999999999888654433
No 39
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=6.3e-05 Score=89.89 Aligned_cols=181 Identities=14% Similarity=0.056 Sum_probs=86.3
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchhH--HHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCC-
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWEG--RSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGK- 913 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la~--la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~- 913 (1987)
...+.-|..+|..+...|+++.|..+|.++-. +.... ...+..+. ...+...+...|.+|.++.-..-.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~------~~g~~~~A~~~~~~al~~~p~~~~~ 137 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV------AAGDMEGAVQAYVSALQYNPDLYCV 137 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HHSCSSHHHHHHHHHHHHCTTCTHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34677899999999999999999999998643 11110 00000000 111122222222222221000000
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhc-----ChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HHHHHHHHHhcC
Q 000162 914 ADSAAKCFYDLGEYERAGKIYEERC-----GKPELEKAGECFFLAGQYKHAAEVYARG-----NF---FSECLAVCSRGE 980 (1987)
Q Consensus 914 ~dkAAk~y~kaGdyekA~eLy~e~~-----~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~kAIemy~kak 980 (1987)
...-+.++...|++++|.++|.+.. ....+...|..+...|++++|.+.|.++ .. +.....++...+
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 0111223333344444444433210 1234566777777777777777777765 11 122334555666
Q ss_pred ChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 981 LFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 981 ~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
.+++|+...++-.+....+ . ......+..|...|+++.|++.++.
T Consensus 218 ~~~~A~~~~~~al~~~p~~-------~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLSPNH-------A-------VVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTC-------H-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCC-------H-------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666554332211110 0 0111224556667777777666553
No 40
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=98.23 E-value=1.1e-06 Score=122.60 Aligned_cols=84 Identities=20% Similarity=0.131 Sum_probs=59.3
Q ss_pred CCcEEEEecCCCCChhhHhhhccCCC----cceEEEEecCCCCCcccccccccccccCccHHHHHHhC-----C--CCce
Q 000162 3 QLKFVVIDEAAQLKESESAIPLQLPC----IQHAILVGDEVQLPAMVESSVSGEAYFGRSLFERLSYL-----G--HPKH 71 (1987)
Q Consensus 3 ~fDlVIIDEASQ~~E~e~LipL~l~~----~krlILVGD~kQLpPiV~s~~~~~~gl~~SLFeRL~~~-----g--~p~~ 71 (1987)
+|++|+|||+...+..+.-+.-.+.+ ...+++|||++| .|. ...|.+..+|...... + ...+
T Consensus 400 ~~~~IlVDEfQDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~Q--sIY-----~FRgAd~~~f~~~~~~~~~~~~~~~~~i 472 (1232)
T 3u4q_A 400 QFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQ--SIY-----RFRLAEPLLFLSKYKRFTESGEGTGRKI 472 (1232)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHSCSCTTSSCEEEEECGGG--CCC-----TTTTCCTHHHHHHHHHSBSSCTTSCEEE
T ss_pred CCCEEEEEccccCCHHHHHHHHHHhcCCCCCCcEEEEeCchH--HhH-----hccCCCHHHHHHHHHHhhhhcCCCCcEe
Confidence 48999999999999877543322222 468999999999 222 1224455566554321 1 2467
Q ss_pred ecccccCCCccccccccccccC
Q 000162 72 LLSMQYRMHPSISFFPNSYFYE 93 (1987)
Q Consensus 72 ~L~~QYRmhP~Is~f~s~~FY~ 93 (1987)
.|+++||++|.|..++|..|-.
T Consensus 473 ~L~~NyRS~~~Il~~~n~lf~~ 494 (1232)
T 3u4q_A 473 DLNKNFRSRADILDSTNFLFKQ 494 (1232)
T ss_dssp EECEESSSCHHHHHHHHHHHHT
T ss_pred ECCCCCCCChHHHHHHHHHHhh
Confidence 8999999999999999988854
No 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.23 E-value=0.0003 Score=80.18 Aligned_cols=156 Identities=10% Similarity=0.005 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHhc-------CC-------HHHHHHHHHhcCChHHHHH
Q 000162 942 ELEKAGECFFLAGQ--------------------YKHAAEVYARG-------NF-------FSECLAVCSRGELFDIGLQ 987 (1987)
Q Consensus 942 ll~~aAe~fE~agq--------------------y~kAAeLYeKa-------Gd-------~~kAIemy~kak~wd~Alr 987 (1987)
.+...|..+...|+ +++|.++|.++ ++ +.....+|...+++++|.+
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 46678888888888 88888777665 22 1223345566777777777
Q ss_pred HHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHH-HHHhhcCCHHHHHHHHHHh
Q 000162 988 YINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMR-NFLKSKSCFDELLVLEEEA 1066 (1987)
Q Consensus 988 Li~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa-~fL~k~~~~dEaiell~ka 1066 (1987)
+.++..+..... ....... ..+...+..|...|+++.|++.+...-...... ........+.....++...
T Consensus 205 ~~~~a~~~~~~~-------~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 205 AHEQRLLIAKEF-------GDKAAER-RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp HHHHHHHHHHHH-------TCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-------CChHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 765432211100 0000111 123344667888899998888776422111000 0000011123345666777
Q ss_pred CCHHHHHHHHHHc-------CCH-------HHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1067 GNFMDAANIARLT-------GDI-------LLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1067 G~f~EA~~iAkq~-------Gd~-------l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
|++++|...+.+. ++. ..-+..+...|++++|...+...
T Consensus 277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777777666553 331 12256667778888888775443
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.23 E-value=0.00021 Score=84.58 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCC--------------------H
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG----KPELEKAGECFFLAGQ--------------------Y 956 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~----~~ll~~aAe~fE~agq--------------------y 956 (1987)
+...+.+|...|++++|+++| ++|.+++.+..+ ...+...|.++...|+ |
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCC------QRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------HHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 334444444445555554444 333344333222 1246678888888888 8
Q ss_pred HHHHHHHHhc-------CC-------HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHH
Q 000162 957 KHAAEVYARG-------NF-------FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCAL 1022 (1987)
Q Consensus 957 ~kAAeLYeKa-------Gd-------~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~ 1022 (1987)
++|.++|.++ ++ +.....+|...+++++|.+..++-.+....... ..... ..+...+.
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~-~~~~~la~ 235 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------KAAER-RAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-------HHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-------cHHHH-HHHHHHHH
Confidence 8888777665 22 223344666777888887776543221110000 00111 12334467
Q ss_pred HHHhcCCHHHHHHHHHHhccHHHHH-HHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc-------CCHH-------HHHH
Q 000162 1023 HYYQLNDKKSMMKFVKAFHSMDLMR-NFLKSKSCFDELLVLEEEAGNFMDAANIARLT-------GDIL-------LTAD 1087 (1987)
Q Consensus 1023 ~ylklgD~~~Am~~vk~~~s~d~aa-~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~-------Gd~l-------~Aae 1087 (1987)
.|...|+++.|+..+...-...... ........+.....++...|++++|...+.+. ++.. .-+.
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 7888999999988776422111000 00000111223445666777777776665553 3321 2266
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 000162 1088 LLQKAGNFKEACNLTLNYV 1106 (1987)
Q Consensus 1088 ~L~kAg~fdeA~rL~l~~~ 1106 (1987)
.+...|++++|...+....
T Consensus 316 ~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6777899999988866653
No 43
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.20 E-value=0.0002 Score=85.99 Aligned_cols=226 Identities=12% Similarity=0.056 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 000162 845 WKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDL 924 (1987)
Q Consensus 845 WkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ka 924 (1987)
|...|..++..|+|+.|..+|.+|-..... ..++......+...|..|...|++++|+++|
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~--- 166 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIF----------------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYA--- 166 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGG----------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH---
Confidence 344899999999999999999987542110 0111112223445555555566666666655
Q ss_pred CCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc-------CC-------HHHHHHHHHhcCChHHH
Q 000162 925 GEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG-------NF-------FSECLAVCSRGELFDIG 985 (1987)
Q Consensus 925 GdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa-------Gd-------~~kAIemy~kak~wd~A 985 (1987)
.+|.+++.+..+ ...+...|.++...|+|++|.+.|.++ ++ +.....+|...+++++|
T Consensus 167 ---~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 167 ---RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ---HHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 445555444222 112445556666666666666555554 21 11222344555556655
Q ss_pred HHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCC------HHHH
Q 000162 986 LQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSC------FDEL 1059 (1987)
Q Consensus 986 lrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~------~dEa 1059 (1987)
.+..++-.+........ +. . ...+...+..|.+.|+++.|...+...-.. ..+.++ +.-.
T Consensus 244 ~~~~~~al~~~~~~~~~-~~------~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNIL-PS------L-PQAYFLITQIHYKLGKIDKAHEYHSKGMAY------SQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHHHHHHHTTCG-GG------H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccc-hh------H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHH
Confidence 55554322210000000 00 0 011223466788889999888877642221 111111 2334
Q ss_pred HHHHHHhCC---HHHHHHHHHHcCCHHHH-------HHHHHHcCCHHHHHHHHHHHH
Q 000162 1060 LVLEEEAGN---FMDAANIARLTGDILLT-------ADLLQKAGNFKEACNLTLNYV 1106 (1987)
Q Consensus 1060 iell~kaG~---f~EA~~iAkq~Gd~l~A-------ae~L~kAg~fdeA~rL~l~~~ 1106 (1987)
..++...|+ +.+|..++++.+..... +..+...|++++|...+.+..
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666666 77777777777654332 566777899999988765543
No 44
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00021 Score=87.69 Aligned_cols=31 Identities=10% Similarity=-0.023 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAK 869 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAg 869 (1987)
..++..|..+|..++..|+|+.|..+|.++-
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 66 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKAL 66 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence 4567788888888888888888888888763
No 45
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.08 E-value=0.00058 Score=82.00 Aligned_cols=225 Identities=12% Similarity=0.054 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
-+...|..++..|+|+.|..+|.+|-..... ..++......+...|..|...|++++|+++|
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~-- 164 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPF----------------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI-- 164 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG----------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhh----------------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHH--
Confidence 4677899999999999999999987542110 0111122233555566666666666666666
Q ss_pred hCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc-------CCHH-------HHHHHHHhcCChHH
Q 000162 924 LGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG-------NFFS-------ECLAVCSRGELFDI 984 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa-------Gd~~-------kAIemy~kak~wd~ 984 (1987)
++|.+++.+..+ ...+...|.++...|+|++|.+.|.++ ++.. ....+|...+++++
T Consensus 165 ----~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 165 ----LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp ----HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ----HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 455555544222 112445666666666666666666554 1211 11224455566666
Q ss_pred HHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCC------HHH
Q 000162 985 GLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSC------FDE 1058 (1987)
Q Consensus 985 AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~------~dE 1058 (1987)
|.+..++-.+........ . . ...+...+..|.+.|+++.|...++..-. ...+.+. +.-
T Consensus 241 A~~~~~~al~~~~~~~~~--~------~-~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~~~~~~ 305 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPD--L------L-PKVLFGLSWTLCKAGQTQKAFQFIEEGLD------HITARSHKFYKELFLF 305 (378)
T ss_dssp HHHHHHHHHHHHHHHCGG--G------H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCCTTCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCh--h------H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HHHHcCCHHHHHHHHH
Confidence 666554322210000000 0 0 11123346678889999998887764211 1111000 112
Q ss_pred HHHHHHHhCC---HHHHHHHHHHcCCHH-------HHHHHHHHcCCHHHHHHHHHHH
Q 000162 1059 LLVLEEEAGN---FMDAANIARLTGDIL-------LTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1059 aiell~kaG~---f~EA~~iAkq~Gd~l-------~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
+..++...|. +.+|...+++.+.+. .-+..+.+.|++++|...+.+.
T Consensus 306 l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 306 LQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2233334444 555555555554332 2366777789998888875554
No 46
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.07 E-value=0.00018 Score=82.54 Aligned_cols=245 Identities=10% Similarity=0.060 Sum_probs=138.1
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchh--HHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcC-C
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWE--GRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIG-K 913 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la--~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G-~ 913 (1987)
..+++.+..+|..++..|+|+.|.++|.++-. +... ....+..+ ....+..++...+.++.+..-... -
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~------~~~~~~~~A~~~~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL------VELNKANELFYLSHKLVDLYPSNPVS 92 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHH------HHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH------HHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 34556677889999999999999999988632 1110 00000000 011111222222222222111000 0
Q ss_pred HHHHHHHHHHhC-CHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhcCC--------HHHHHHHHHhc
Q 000162 914 ADSAAKCFYDLG-EYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARGNF--------FSECLAVCSRG 979 (1987)
Q Consensus 914 ~dkAAk~y~kaG-dyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKaGd--------~~kAIemy~ka 979 (1987)
+-.-+.+|...| ++++|.+.+.+... ...+...|.++...|++++|.++|.++-. +.....+|...
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 122244445555 55555555544211 34578899999999999999999998721 12345578889
Q ss_pred CChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHH----HHhhcCC
Q 000162 980 ELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRN----FLKSKSC 1055 (1987)
Q Consensus 980 k~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~----fL~k~~~ 1055 (1987)
+++++|.++.++..+....+. ..+...+..|...|+++.|+..+...-....... .-.....
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~--------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDP--------------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred hhHHHHHHHHHHHHHhCCCCh--------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 999999998876554332210 1122346678889999999887764322110000 0000112
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHc----C----CHHHHHHHHHHcCCHHHHHHHHH
Q 000162 1056 FDELLVLEEEAGNFMDAANIARLT----G----DILLTADLLQKAGNFKEACNLTL 1103 (1987)
Q Consensus 1056 ~dEaiell~kaG~f~EA~~iAkq~----G----d~l~Aae~L~kAg~fdeA~rL~l 1103 (1987)
+.....++...|++++|...+++. . -+..-+..+...|++++|...+.
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 344567777888888888777764 1 12233777778899999888743
No 47
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.06 E-value=0.00027 Score=87.53 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHhcC------------hhHHHHHHHHHHHcCCHHHHHHHHHhcC----C---HHHHHHHHHhcCChHHH
Q 000162 925 GEYERAGKIYEERCG------------KPELEKAGECFFLAGQYKHAAEVYARGN----F---FSECLAVCSRGELFDIG 985 (1987)
Q Consensus 925 GdyekA~eLy~e~~~------------~~ll~~aAe~fE~agqy~kAAeLYeKaG----d---~~kAIemy~kak~wd~A 985 (1987)
|+|++|+++|.+... ...+...|.++...|++++|.++|.++- + +.....+|...+++++|
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 467777777665322 1136677888888999999999988872 1 22333456677888888
Q ss_pred HHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHH
Q 000162 986 LQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEE 1065 (1987)
Q Consensus 986 lrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~k 1065 (1987)
+++.++..+..... . ..+...+..|...|+++.|+..+...-..+. .....+.....++..
T Consensus 296 ~~~~~~~~~~~~~~-------~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 296 FKFFQKAVDLNPEY-------P-------PTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-----ENVYPYIQLACLLYK 356 (537)
T ss_dssp HHHHHHHHHHCTTC-------H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCC-------H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHH
Confidence 88876544432211 0 1122346678889999999987774321110 001123345567778
Q ss_pred hCCHHHHHHHHHHc----C----CHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000162 1066 AGNFMDAANIARLT----G----DILLTADLLQKAGNFKEACNLTLNYVLS 1108 (1987)
Q Consensus 1066 aG~f~EA~~iAkq~----G----d~l~Aae~L~kAg~fdeA~rL~l~~~~~ 1108 (1987)
.|++++|...+.+. + -+..-+..+...|++++|...+..-...
T Consensus 357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888888877764 1 1223377788889999999986665433
No 48
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.05 E-value=0.00077 Score=81.61 Aligned_cols=220 Identities=10% Similarity=0.029 Sum_probs=135.3
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhccc--chh---H----HHHH---hhhHHhhhhhhcCChHHHHHHHHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDT--YWE---G----RSKA---TGLKAASDHIRSSNPLEANVILREAAN 906 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~--~la---~----la~A---~~l~~aA~~l~s~~~~ea~~~y~eAAe 906 (1987)
...+.-|..+|..+...|+++.|..+|.++-.. ... . +... ......+. .....+.+.+|..
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL------NAFGSGDYTAAIA 164 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHH------HHHHcCCHHHHHH
Confidence 346889999999999999999999999997542 111 0 0000 00011111 1112333444444
Q ss_pred HHHHcC-----C---HHHHHHHHHHhCCHHHHHHHHHHhc-----ChhHHHHHHHHHHHcCCHHHHHHHHHhc----CCH
Q 000162 907 IFEAIG-----K---ADSAAKCFYDLGEYERAGKIYEERC-----GKPELEKAGECFFLAGQYKHAAEVYARG----NFF 969 (1987)
Q Consensus 907 lYe~~G-----~---~dkAAk~y~kaGdyekA~eLy~e~~-----~~~ll~~aAe~fE~agqy~kAAeLYeKa----Gd~ 969 (1987)
+|.++- . +..-+.+|.+.|++++|.+.|.+.. ....+...|..+...|++++|.++|.++ .+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 244 (450)
T 2y4t_A 165 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Confidence 444321 1 1223677778888888887776531 2356888999999999999999999887 122
Q ss_pred HHH----------------HHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 000162 970 SEC----------------LAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSM 1033 (1987)
Q Consensus 970 ~kA----------------Iemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~A 1033 (1987)
..+ ..+|.+.+++++|.++.++..+....+.. .....+...+..|.+.|+++.|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----------~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE----------YTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH----------HHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH----------HHHHHHHHHHHHHHHCCCHHHH
Confidence 222 56788899999999988765443222100 0012233446788999999999
Q ss_pred HHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc
Q 000162 1034 MKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT 1079 (1987)
Q Consensus 1034 m~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~ 1079 (1987)
+..+...-..+. .....+.....++...|++++|...+++.
T Consensus 315 ~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 315 IRVCSEVLQMEP-----DNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 988775321110 00011233556677888888888777764
No 49
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.05 E-value=0.00059 Score=79.45 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh----hHHHHHHHHHHHcCCHHHHHHHHHhcCCH
Q 000162 894 PLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGK----PELEKAGECFFLAGQYKHAAEVYARGNFF 969 (1987)
Q Consensus 894 ~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~----~ll~~aAe~fE~agqy~kAAeLYeKaGd~ 969 (1987)
..++...|.+|+.+|...|++++|+++| .+|++++.+.++. ..+..+|.+|...|+|++|.++|.
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~----- 101 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSF------LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE----- 101 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHH------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-----
Confidence 3456667888888888888888888888 5666666553221 234455666666666666555543
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHhccHHHHHH
Q 000162 970 SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQL-NDKKSMMKFVKAFHSMDLMRN 1048 (1987)
Q Consensus 970 ~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylkl-gD~~~Am~~vk~~~s~d~aa~ 1048 (1987)
+|++++.+.+++..+.. .+...+..|... |+++.|+..++..- +
T Consensus 102 -~Al~l~~~~g~~~~~a~----------------------------~~~~lg~~~~~~lg~~~~A~~~~~~Al------~ 146 (292)
T 1qqe_A 102 -NAIQIFTHRGQFRRGAN----------------------------FKFELGEILENDLHDYAKAIDCYELAG------E 146 (292)
T ss_dssp -HHHHHHHHTTCHHHHHH----------------------------HHHHHHHHHHHTTCCHHHHHHHHHHHH------H
T ss_pred -HHHHHHHHcCCHHHHHH----------------------------HHHHHHHHHHHhhcCHHHHHHHHHHHH------H
Confidence 33334333333221111 122335567774 88888887766322 2
Q ss_pred HHhhcC-------CHHHHHHHHHHhCCHHHHHHHHHHc-------CC--------HHHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1049 FLKSKS-------CFDELLVLEEEAGNFMDAANIARLT-------GD--------ILLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1049 fL~k~~-------~~dEaiell~kaG~f~EA~~iAkq~-------Gd--------~l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
.....+ .+..+..++...|++++|...+.+. +. +...+..+...|++++|...+-++
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 211111 2334567788888888888887764 11 233466677789999998885443
No 50
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.02 E-value=0.0012 Score=76.48 Aligned_cols=226 Identities=8% Similarity=-0.011 Sum_probs=135.7
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccc-----hhHHHHHhhhHHhh-hhhhcCChHHHHHHHHHHHHHHHHcC
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTY-----WEGRSKATGLKAAS-DHIRSSNPLEANVILREAANIFEAIG 912 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~-----la~la~A~~l~~aA-~~l~s~~~~ea~~~y~eAAelYe~~G 912 (1987)
...+.-|..+|..+...|+++.|..+|.++-... ........+..... ............+.+.+|.++|.++-
T Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3477899999999999999999999999974321 11111000000000 00000001112233444444444321
Q ss_pred -----C---HHHHHHHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc----CCHHH----
Q 000162 913 -----K---ADSAAKCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG----NFFSE---- 971 (1987)
Q Consensus 913 -----~---~dkAAk~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa----Gd~~k---- 971 (1987)
. +..-+.+|...|+|++|.+.+.+... ...+...|..+...|++++|.+.|.++ .+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 1 22346777888888888888776322 356889999999999999999999887 22222
Q ss_pred ------------HHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 972 ------------CLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 972 ------------AIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
...++.+.+++++|+.+.++..+....+.. .....+...+..|.+.|+++.|+..+..
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE----------YTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH----------HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 245688899999999998765543322111 1111223346788899999999988774
Q ss_pred hccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc
Q 000162 1040 FHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT 1079 (1987)
Q Consensus 1040 ~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~ 1079 (1987)
.-..+. .....+-....++...|++++|...+++.
T Consensus 298 ~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 298 VLQMEP-----DNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 322110 00111334556777888888888777764
No 51
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=98.01 E-value=7.5e-07 Score=123.80 Aligned_cols=83 Identities=27% Similarity=0.233 Sum_probs=45.7
Q ss_pred CCceeeeeecccCCCCCeEEEeecCCCCCcchhhHHHHHHHHHhhhccCCCCCCCCChhhhhhhcccccccCcEEecccc
Q 000162 717 KQALVLTIVESKGLEFQDVLLYDFFGSSPLKNQWRVVYEYMKEQALLDSTLPASFPSFNEAKHNVLCPELKQLYVAITRT 796 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVAITRA 796 (1987)
+...|||||+|||||||+|++.+.....+.... .+.+...-..+.+... ............+..|+++||||+|||
T Consensus 734 d~V~ImTIHkSKGLEfpvVfl~~~~~~~~~~~~--~~~~~~~~~~~l~~~~--~~~~~~~~~~e~~~Ee~RLlYVAlTRA 809 (1180)
T 1w36_B 734 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA--FYHDRHSFEAVLDLNA--APESVDLAEAERLAEDLRLLYVALTRS 809 (1180)
T ss_dssp GSEEEEETTTTSSCCEEEEEETTTTCCCCCCSC--EEECTTTCCEEEESSC--CHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred CeEEEEEEeccCCCcCCEEEEeccccCCCCCCC--eeecCCCcceeecCCC--cHHHHHHHHHHHHHHHhhHHhhhhcch
Confidence 356799999999999999999776542110000 0000000000000000 000011111234567899999999999
Q ss_pred cccchhc
Q 000162 797 RQRLWIW 803 (1987)
Q Consensus 797 Kk~LvIv 803 (1987)
|++|+|+
T Consensus 810 k~~L~l~ 816 (1180)
T 1w36_B 810 VWHCSLG 816 (1180)
T ss_dssp EEEEEEE
T ss_pred hhheEEE
Confidence 9999996
No 52
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.98 E-value=0.00054 Score=80.42 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=57.4
Q ss_pred HHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHH
Q 000162 853 FYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIR-SSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAG 931 (1987)
Q Consensus 853 ~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~-s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~ 931 (1987)
+..|+|++|..++.++...... .+ .. ..+...+...|.+|+.+|...|++++|+++| .+|+
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~------~~------~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~------~~al 63 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKT------SF------MKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAY------LQEA 63 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCC------CS------SSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH------HHHH
T ss_pred CccchHHHHHHHHHHHHHHccc------cc------cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHH
Confidence 3467888888888877642110 00 11 3456677788888888888888888888888 5666
Q ss_pred HHHHHhcCh----hHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 932 KIYEERCGK----PELEKAGECFFLAGQYKHAAEVYA 964 (1987)
Q Consensus 932 eLy~e~~~~----~ll~~aAe~fE~agqy~kAAeLYe 964 (1987)
+++.+.... ..+..+|.+|...|+|++|.++|.
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 100 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIE 100 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666553221 124445555555555555544443
No 53
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.97 E-value=0.00057 Score=81.60 Aligned_cols=240 Identities=13% Similarity=0.007 Sum_probs=133.3
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--cchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcC----
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD--TYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIG---- 912 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd--~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G---- 912 (1987)
..++.-|..+|..++..++++.|...|.++-. +.........+.. ....+.+++|.+.|.++-
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~-----------~~~~g~~~~A~~~~~~al~~~p 98 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV-----------YKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH-----------HHHCCCHHHHHHHHHHHHHcCc
Confidence 34667888899999999999999999987533 2111100000000 111222333333333220
Q ss_pred -C---HHHHHHHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhcC-----C---HHHHHHH
Q 000162 913 -K---ADSAAKCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARGN-----F---FSECLAV 975 (1987)
Q Consensus 913 -~---~dkAAk~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKaG-----d---~~kAIem 975 (1987)
. +..-+.+|.+.|++++|.+.|.+... ...+...|..+...|++++|.++|.++- + +.....+
T Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178 (388)
T ss_dssp TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 12234556666666666666654211 2446778999999999999999998761 1 2334456
Q ss_pred HHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcc--------HHHHH
Q 000162 976 CSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHS--------MDLMR 1047 (1987)
Q Consensus 976 y~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s--------~d~aa 1047 (1987)
+.+.+++++|....++-.+..... . ..+...+..+...|+++.|+..+...-. +....
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~p~~-------~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLDPNF-------L-------DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTC-------H-------HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCc-------H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 778888888888776543322111 0 1122335667778887777766553111 00112
Q ss_pred HHHhhcCCHHHHHH---------------------HHHHhCCHHHHHHHHHHc----C-C---HHHHHHHHHHcCCHHHH
Q 000162 1048 NFLKSKSCFDELLV---------------------LEEEAGNFMDAANIARLT----G-D---ILLTADLLQKAGNFKEA 1098 (1987)
Q Consensus 1048 ~fL~k~~~~dEaie---------------------ll~kaG~f~EA~~iAkq~----G-d---~l~Aae~L~kAg~fdeA 1098 (1987)
..+.+.|++++|++ .+...|++++|...+.+. + + +..-+..+.+.|++++|
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 22333444444443 345567777777776653 1 1 11225556667888888
Q ss_pred HHHHH
Q 000162 1099 CNLTL 1103 (1987)
Q Consensus 1099 ~rL~l 1103 (1987)
...+-
T Consensus 325 ~~~~~ 329 (388)
T 1w3b_A 325 VRLYR 329 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 54
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.96 E-value=0.00023 Score=84.13 Aligned_cols=218 Identities=9% Similarity=-0.019 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
..|..+|..++..|+|+.|..+|.++=... |.. ...+...+..|...|++++|+++|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------p~~-~~~~~~lg~~~~~~g~~~~A~~~~- 122 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD---------------------PGD-AEAWQFLGITQAENENEQAAIVAL- 122 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------cCC-HHHHHHHHHHHHHCCCHHHHHHHH-
Confidence 458999999999999999999999763310 000 123567788888899999999988
Q ss_pred HhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHH------------------HHHHHHHhcCChHH
Q 000162 923 DLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFS------------------ECLAVCSRGELFDI 984 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~------------------kAIemy~kak~wd~ 984 (1987)
++|+++.. .....+...|.++...|++++|.++|.++-... ....++.+.+++++
T Consensus 123 -----~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 123 -----QRCLELQP--NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp -----HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHH
T ss_pred -----HHHHhcCC--CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHH
Confidence 55665521 123557788999999999999999998872211 12457778888888
Q ss_pred HHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHH
Q 000162 985 GLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEE 1064 (1987)
Q Consensus 985 AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~ 1064 (1987)
|.++.++..+....... . ......+..|...|+++.|+..+...-.... .....+.....++.
T Consensus 196 A~~~~~~al~~~p~~~~-----~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMID-----P-------DLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-----EDYSLWNRLGATLA 258 (365)
T ss_dssp HHHHHHHHHHHSCSSCC-----H-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccC-----H-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Confidence 88888654443221000 0 1122346678889999999988774221110 00111334556777
Q ss_pred HhCCHHHHHHHHHHc----CC----HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000162 1065 EAGNFMDAANIARLT----GD----ILLTADLLQKAGNFKEACNLTLNYVL 1107 (1987)
Q Consensus 1065 kaG~f~EA~~iAkq~----Gd----~l~Aae~L~kAg~fdeA~rL~l~~~~ 1107 (1987)
..|++++|...+.+. ++ +..-+..+...|++++|...+.+-..
T Consensus 259 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888777764 22 22336677778999888887655443
No 55
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.95 E-value=0.00032 Score=86.86 Aligned_cols=127 Identities=6% Similarity=-0.013 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCC---------------HHHHHHHHHHhCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCCHHH
Q 000162 898 NVILREAANIFEAIGK---------------ADSAAKCFYDLGEYERAGKIYEERCG----KPELEKAGECFFLAGQYKH 958 (1987)
Q Consensus 898 ~~~y~eAAelYe~~G~---------------~dkAAk~y~kaGdyekA~eLy~e~~~----~~ll~~aAe~fE~agqy~k 958 (1987)
.+.|.+|..+|.++-. +...+.++...|++++|.+.+.+... ...+...|..+...|+|++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHH
Confidence 3456666666665321 11224566667777777766655211 2345566777777777777
Q ss_pred HHHHHHhc-----CC---HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCH
Q 000162 959 AAEVYARG-----NF---FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDK 1030 (1987)
Q Consensus 959 AAeLYeKa-----Gd---~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~ 1030 (1987)
|.++|.++ .+ +.....+|...+++++|....++..+...... ......+..|...|++
T Consensus 295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV--------------YPYIQLACLLYKQGKF 360 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS--------------HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--------------HHHHHHHHHHHHcCCH
Confidence 77777665 11 12233455666777777776654333211110 0111224455666666
Q ss_pred HHHHHHHH
Q 000162 1031 KSMMKFVK 1038 (1987)
Q Consensus 1031 ~~Am~~vk 1038 (1987)
+.|+..+.
T Consensus 361 ~~A~~~~~ 368 (537)
T 3fp2_A 361 TESEAFFN 368 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666555
No 56
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00028 Score=77.53 Aligned_cols=133 Identities=15% Similarity=0.012 Sum_probs=100.9
Q ss_pred HHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhhccc
Q 000162 918 AKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQHVD 997 (1987)
Q Consensus 918 Ak~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~~~e 997 (1987)
-+...+.|+++.|.+++++...+..+++.|+..-..|++.-|.++|.++||+++..=+|.-.|+-++...+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~------- 84 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQN------- 84 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH-------
T ss_pred HHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH-------
Confidence 3445567888888888887777889999999999999999999999999999999988887777665444431
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHH
Q 000162 998 TDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIAR 1077 (1987)
Q Consensus 998 ~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAk 1077 (1987)
.-...||+..| ...+--.|+++++++++.+.|++.+|+-.|+
T Consensus 85 -------------------------iA~~~g~~n~a-------------f~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~ 126 (177)
T 3mkq_B 85 -------------------------IAQTREDFGSM-------------LLNTFYNNSTKERSSIFAEGGSLPLAYAVAK 126 (177)
T ss_dssp -------------------------HHHHTTCHHHH-------------HHHHHHHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------HHHHCccHHHH-------------HHHHHHcCCHHHHHHHHHHCCChHHHHHHHH
Confidence 11223333322 2222236888889999999999999999999
Q ss_pred HcCCHHHHHHHHHHcCCH
Q 000162 1078 LTGDILLTADLLQKAGNF 1095 (1987)
Q Consensus 1078 q~Gd~l~Aae~L~kAg~f 1095 (1987)
.+|--..|.+++...|--
T Consensus 127 t~g~~~~a~~~~~~~~~~ 144 (177)
T 3mkq_B 127 ANGDEAAASAFLEQAEVD 144 (177)
T ss_dssp HTTCHHHHHHHHHHTTCC
T ss_pred HcCcHHHHHHHHHHhCCc
Confidence 999988888887776543
No 57
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.92 E-value=1.6e-06 Score=120.89 Aligned_cols=90 Identities=24% Similarity=0.429 Sum_probs=51.3
Q ss_pred CCceeeeeecccCCCCCeEEEeecCCCCCcch-hhHHHHHH-HH-HhhhccCCCCCCCCChh------hhhhhccccccc
Q 000162 717 KQALVLTIVESKGLEFQDVLLYDFFGSSPLKN-QWRVVYEY-MK-EQALLDSTLPASFPSFN------EAKHNVLCPELK 787 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~~-~~~~l~~~-~k-~q~~~~~~~~s~~p~~d------~~~~~~L~~ELn 787 (1987)
+...|||||+|||||||+|||.+...+.+... .-..+... +. ...+.+......+|... ...-..+..|++
T Consensus 786 d~V~ImTIH~SKGLEfpvVfl~gl~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~EE~R 865 (1232)
T 3u4q_A 786 DVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELR 865 (1232)
T ss_dssp CCEEEEEGGGTTTCCEEEEEEECTTSBCCCTTSCSSEEEETTTEEEECEEETTTTEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecchhccCCCCCEEEEccccccCCCcCCCCCeeeccccCcCcceecchhccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999998764322110 00000000 00 00011111111122211 112235667899
Q ss_pred CcEEecccccccchhcccc
Q 000162 788 QLYVAITRTRQRLWIWENM 806 (1987)
Q Consensus 788 LLYVAITRAKk~LvIve~~ 806 (1987)
+||||+|||+++|+|+-..
T Consensus 866 LLYVAlTRAk~~L~l~~~~ 884 (1232)
T 3u4q_A 866 VLYVALTRAKEKLFLIGSC 884 (1232)
T ss_dssp HHHHHHHTEEEEEEEEEEC
T ss_pred HHHHHHHhhccEEEEEEEe
Confidence 9999999999999998654
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.92 E-value=0.0012 Score=75.13 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHH----cCCHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEA----IGKAD 915 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~----~G~~d 915 (1987)
.++..|..+|..++..++++.|..+|.++-+.... ..+...+.+|.. .|+++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------------------------~a~~~lg~~~~~g~~~~~~~~ 59 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN------------------------SGCFNLGVLYYQGQGVEKNLK 59 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH------------------------HHHHHHHHHHHHTSSSCCCHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCH------------------------HHHHHHHHHHHcCCCcCCCHH
Confidence 46778899999999999999999999976542110 123345556666 66666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHH----cCCHHHHHHHHHhc---CCHHH---HHHHHHh----cCC
Q 000162 916 SAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFL----AGQYKHAAEVYARG---NFFSE---CLAVCSR----GEL 981 (1987)
Q Consensus 916 kAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~----agqy~kAAeLYeKa---Gd~~k---AIemy~k----ak~ 981 (1987)
+|+++| ++|+++ .....+...|..+.. .+++++|.+.|.++ ++..- ...+|.. .++
T Consensus 60 ~A~~~~------~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 60 KAASFY------AKACDL----NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp HHHHHH------HHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCC
T ss_pred HHHHHH------HHHHHC----CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccC
Confidence 666666 333332 223445566667776 67777777776665 32221 1224444 556
Q ss_pred hHHHHHHHHH
Q 000162 982 FDIGLQYINY 991 (1987)
Q Consensus 982 wd~AlrLi~q 991 (1987)
+++|++..++
T Consensus 130 ~~~A~~~~~~ 139 (273)
T 1ouv_A 130 FKKAVEYFTK 139 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 59
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00064 Score=83.42 Aligned_cols=77 Identities=4% Similarity=-0.178 Sum_probs=50.6
Q ss_pred HHHHHHhCCHHHHHHHHHHhc----ChhHHHHHHHHHHHcCCHHHHHHHHHhcCC--------HHHHHHHHHhcCChHHH
Q 000162 918 AKCFYDLGEYERAGKIYEERC----GKPELEKAGECFFLAGQYKHAAEVYARGNF--------FSECLAVCSRGELFDIG 985 (1987)
Q Consensus 918 Ak~y~kaGdyekA~eLy~e~~----~~~ll~~aAe~fE~agqy~kAAeLYeKaGd--------~~kAIemy~kak~wd~A 985 (1987)
+.+|...|+|++|.+++.+.. ....+...|.++...|++++|.+.|.++-. +.....+|...+++++|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 566777788888887776521 134466678888888888888888777511 12344466777777777
Q ss_pred HHHHHHhhh
Q 000162 986 LQYINYWKQ 994 (1987)
Q Consensus 986 lrLi~qy~~ 994 (1987)
....++..+
T Consensus 324 ~~~~~~~~~ 332 (514)
T 2gw1_A 324 GKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777765433
No 60
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.89 E-value=0.00082 Score=77.03 Aligned_cols=215 Identities=9% Similarity=-0.025 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
++.|..+|..++..|+|+.|..+|.++-...- .+ ...+...+..|...|++++|+++|
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------------~~----~~~~~~l~~~~~~~~~~~~A~~~~ 78 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP------------------ER----EEAWRSLGLTQAENEKDGLAIIAL 78 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------------------CC----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35678899999999999999999997633100 00 122445677788888888888888
Q ss_pred HHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCH-------HHH---------------HH-HHHh
Q 000162 922 YDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFF-------SEC---------------LA-VCSR 978 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~-------~kA---------------Ie-my~k 978 (1987)
++|.++.. .....+...|.++...|++++|.+.|.++-.. -.. .. ++..
T Consensus 79 ------~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 79 ------NHARMLDP--KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150 (327)
T ss_dssp ------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS
T ss_pred ------HHHHhcCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Confidence 45555421 12355778899999999999999988876110 000 11 3566
Q ss_pred cCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHH
Q 000162 979 GELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDE 1058 (1987)
Q Consensus 979 ak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dE 1058 (1987)
.+++++|.++.++..+....+ .......+..|...|+++.|+..+...-.... .....+..
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~ 211 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPND--------------AQLHASLGVLYNLSNNYDSAAANLRRAVELRP-----DDAQLWNK 211 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCC--------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CcHHHHHH
Confidence 677777777775543322111 01222346677888998888887764211110 00011233
Q ss_pred HHHHHHHhCCHHHHHHHHHHc----CC----HHHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1059 LLVLEEEAGNFMDAANIARLT----GD----ILLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1059 aiell~kaG~f~EA~~iAkq~----Gd----~l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
...++...|++++|...+.+. .+ +..-+..+...|++++|...+...
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455666677777776666553 11 222366667778888887765544
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.89 E-value=0.0014 Score=74.41 Aligned_cols=238 Identities=16% Similarity=0.130 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
....|..+|..+...|+|+.|..+|.++-.... .. ...+.......+...+..|...|++++|.++
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLE-----KT---------SGHDHPDVATMLNILALVYRDQNKYKDAANL 91 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HH---------HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HH---------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345688999999999999999999997644210 00 0001112233466777888888888888888
Q ss_pred HHHhCCHHHHHHHHHHh--cC----hhHHHHHHHHHHHcCCHHHHHHHHHhcCCH----------------HHHHHHHHh
Q 000162 921 FYDLGEYERAGKIYEER--CG----KPELEKAGECFFLAGQYKHAAEVYARGNFF----------------SECLAVCSR 978 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~--~~----~~ll~~aAe~fE~agqy~kAAeLYeKaGd~----------------~kAIemy~k 978 (1987)
| ++|++++.+. .+ ...+...|.++...|+|++|.++|.++-.. .....+|..
T Consensus 92 ~------~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 165 (311)
T 3nf1_A 92 L------NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN 165 (311)
T ss_dssp H------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred H------HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 7 5666665443 11 234667888888888888888888776322 122345667
Q ss_pred cCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHH---------
Q 000162 979 GELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNF--------- 1049 (1987)
Q Consensus 979 ak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~f--------- 1049 (1987)
.++|++|.++.++..+......+. . ...........+..|...|+++.|+..+...-.......+
T Consensus 166 ~~~~~~A~~~~~~a~~~~~~~~~~--~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 166 QGKYEEVEYYYQRALEIYQTKLGP--D----DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTSCT--T----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 788888887775433210000000 0 0001122334477888899999998887753322111000
Q ss_pred -HhhcCCHHHHHHHHHHhCCHHHHHHHHHHcC--------CHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 1050 -LKSKSCFDELLVLEEEAGNFMDAANIARLTG--------DILLTADLLQKAGNFKEACNLTLN 1104 (1987)
Q Consensus 1050 -L~k~~~~dEaiell~kaG~f~EA~~iAkq~G--------d~l~Aae~L~kAg~fdeA~rL~l~ 1104 (1987)
....+.+......+...+.+.+|...+.... -+..-+..+.+.|++++|...+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0001111122222333344433333333321 122336777778888888887544
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.86 E-value=0.00056 Score=76.66 Aligned_cols=216 Identities=12% Similarity=-0.021 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
.+..|..+|..+...|+|+.|..+|.++-...- .+ ...+...|.+|...|++++|+++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------------~~----~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRP------------------DM----PEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------------------CC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC------------------Cc----HHHHHHHHHHHHHccCHHHHHHH
Confidence 456789999999999999999999997643110 00 12355678888889999999998
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH--HHHHHHHHhcCChHHHHHHHHHhh
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF--SECLAVCSRGELFDIGLQYINYWK 993 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~--~kAIemy~kak~wd~AlrLi~qy~ 993 (1987)
| ++|+++... ....+...|.++...|++++|.++|.++ ++. ...+.++...+++++|..+..+..
T Consensus 100 ~------~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 100 F------DSVLELDPT--YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp H------HHHHHHCTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred H------HHHHhcCcc--ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8 566665221 2456788999999999999999999887 222 223334556678888888775443
Q ss_pred hcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHH
Q 000162 994 QHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAA 1073 (1987)
Q Consensus 994 ~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~ 1073 (1987)
.....+.. . ...+..+...++.+.|+..+...-....... ......+.....++...|++++|.
T Consensus 172 ~~~~~~~~-------~--------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 172 EKSDKEQW-------G--------WNIVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HHSCCCST-------H--------HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCcchH-------H--------HHHHHHHHHhcCHHHHHHHHHHHhccccccc-ccccHHHHHHHHHHHHcCCHHHHH
Confidence 32221100 0 0123455666777777776664322221100 000122344567778888888888
Q ss_pred HHHHHc-----CCHHHHHHHHHHcCCHHHHHHHH
Q 000162 1074 NIARLT-----GDILLTADLLQKAGNFKEACNLT 1102 (1987)
Q Consensus 1074 ~iAkq~-----Gd~l~Aae~L~kAg~fdeA~rL~ 1102 (1987)
..+++. .++...+..+..-|++++|...+
T Consensus 236 ~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 236 ALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 877764 24444455666667787776653
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.85 E-value=0.0019 Score=77.39 Aligned_cols=226 Identities=15% Similarity=0.096 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccch-----hHHHHHhhhHHhhh-hhhcCChHHHHHHHHHHHHHHHHcCCHH-
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYW-----EGRSKATGLKAASD-HIRSSNPLEANVILREAANIFEAIGKAD- 915 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~l-----a~la~A~~l~~aA~-~l~s~~~~ea~~~y~eAAelYe~~G~~d- 915 (1987)
..|..+|..+...|+|+.|..+|.++-.... .....+. ...+. .....+...+...|.+|.+++.+.+...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS--GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence 4678888888888999999888887643210 0011110 00111 1223445556666666666666555422
Q ss_pred ------HHHHHHHHhCC-----------------HHHHHHHHHHh-------cC----hhHHHHHHHHHHHcCCHHHHHH
Q 000162 916 ------SAAKCFYDLGE-----------------YERAGKIYEER-------CG----KPELEKAGECFFLAGQYKHAAE 961 (1987)
Q Consensus 916 ------kAAk~y~kaGd-----------------yekA~eLy~e~-------~~----~~ll~~aAe~fE~agqy~kAAe 961 (1987)
.-+.+|...|+ |++|.+.+.+. .. ...+...|..+...|+|++|.+
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE 244 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 22455666666 66666655441 11 1247788999999999999999
Q ss_pred HHHhc-------CC-------HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 000162 962 VYARG-------NF-------FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQL 1027 (1987)
Q Consensus 962 LYeKa-------Gd-------~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylkl 1027 (1987)
+|.++ ++ +.....+|...+++++|.++.++..+..... + ... .....+...+..|...
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~------~~~-~~~~~~~~la~~~~~~ 316 (411)
T 4a1s_A 245 HHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL-G------ERE-VEAQSCYSLGNTYTLL 316 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-T------CHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-C------CHH-HHHHHHHHHHHHHHHc
Confidence 98887 32 2344557778889998888876433321100 0 000 1112233457788899
Q ss_pred CCHHHHHHHHHHhccHHHHH-HHHhhcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 000162 1028 NDKKSMMKFVKAFHSMDLMR-NFLKSKSCFDELLVLEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1028 gD~~~Am~~vk~~~s~d~aa-~fL~k~~~~dEaiell~kaG~f~EA~~iAkq 1078 (1987)
|+++.|...+...-...... ........+.....++...|++++|...+++
T Consensus 317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999988777432221100 0000011233455667777888888776665
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.85 E-value=0.0025 Score=76.47 Aligned_cols=201 Identities=14% Similarity=0.092 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
..-|..+|..+...|+++.|..+|.+|-+... ..+ .........+...|..|...|++++|.++|
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-----~~~----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 207 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYK-----EHE----------AYNIRLLQCHSLFATNFLDLKQYEDAISHF 207 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TCS----------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCc----------cchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35678999999999999999999998754211 000 001112234666777888888888888887
Q ss_pred HHhCCHHHHHHHHHHhcCh----hHHHHHHHHHHHcCCHHHHHHHHHhc-------CC-------HHHHHHHHHhcCChH
Q 000162 922 YDLGEYERAGKIYEERCGK----PELEKAGECFFLAGQYKHAAEVYARG-------NF-------FSECLAVCSRGELFD 983 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~----~ll~~aAe~fE~agqy~kAAeLYeKa-------Gd-------~~kAIemy~kak~wd 983 (1987)
++|.+++.+..+. ..+...|.++...|+|++|.+.|.++ ++ +.....+|.+.++++
T Consensus 208 ------~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 281 (383)
T 3ulq_A 208 ------QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKID 281 (383)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHH
Confidence 6677776653321 24667888888888888888887776 44 334445667777888
Q ss_pred HHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHhccHHHHHHHHhhcCCHHHHH
Q 000162 984 IGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLND---KKSMMKFVKAFHSMDLMRNFLKSKSCFDELL 1060 (1987)
Q Consensus 984 ~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD---~~~Am~~vk~~~s~d~aa~fL~k~~~~dEai 1060 (1987)
+|.+..++-.+....... ..... .+...+..|...|+ ++.|+..++...........+ ..+.
T Consensus 282 ~A~~~~~~al~~~~~~~~-------~~~~~--~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~------~~la 346 (383)
T 3ulq_A 282 KAHEYHSKGMAYSQKAGD-------VIYLS--EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA------IDVA 346 (383)
T ss_dssp HHHHHHHHHHHHHHHHTC-------HHHHH--HHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHcCC-------HHHHH--HHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHH------HHHH
Confidence 877777543221100000 00001 12335667888888 677777666655544333322 2456
Q ss_pred HHHHHhCCHHHHHHHHHH
Q 000162 1061 VLEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1061 ell~kaG~f~EA~~iAkq 1078 (1987)
.++...|++++|...+++
T Consensus 347 ~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 777788888888776665
No 65
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.84 E-value=0.00099 Score=78.16 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 000162 897 ANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEE 936 (1987)
Q Consensus 897 a~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e 936 (1987)
+...|..++.+|...|++++|+++| ++|++++.+
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~------~~Al~l~~~ 108 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYI------EKASVMYVE 108 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHH------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH------HHHHHHHHH
Confidence 3445666666666666666666666 555555544
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.80 E-value=0.0031 Score=71.66 Aligned_cols=226 Identities=16% Similarity=0.103 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccch-----hHHHHHhhhHHhhh-hhhcCChHHHHHHHHHHHHHHHHcCCH--
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYW-----EGRSKATGLKAASD-HIRSSNPLEANVILREAANIFEAIGKA-- 914 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~l-----a~la~A~~l~~aA~-~l~s~~~~ea~~~y~eAAelYe~~G~~-- 914 (1987)
..|..+|..+...|+|+.|..+|.++-.... ...+.+. ...+. .....+...+...+.+|.+++.+.+..
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 121 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS--GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH--HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH
Confidence 4567778888888888888888877543210 0001100 00111 112334455555666666666655542
Q ss_pred -----HHHHHHHHHhCC--------------------HHHHHHHHHH-------hcC----hhHHHHHHHHHHHcCCHHH
Q 000162 915 -----DSAAKCFYDLGE--------------------YERAGKIYEE-------RCG----KPELEKAGECFFLAGQYKH 958 (1987)
Q Consensus 915 -----dkAAk~y~kaGd--------------------yekA~eLy~e-------~~~----~~ll~~aAe~fE~agqy~k 958 (1987)
..-+.+|...|+ +++|.+.+.+ ... ...+...|..+...|++++
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 122455555666 6666655543 111 1246678889999999999
Q ss_pred HHHHHHhc-------CC-------HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 000162 959 AAEVYARG-------NF-------FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHY 1024 (1987)
Q Consensus 959 AAeLYeKa-------Gd-------~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~y 1024 (1987)
|.++|.++ ++ +.....+|...+++++|..+.++..+....... .. .....+...+..|
T Consensus 202 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~-~~~~~~~~la~~~ 273 (338)
T 3ro2_A 202 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-------RA-VEAQSCYSLGNTY 273 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------HH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-------hh-HHHHHHHHHHHHH
Confidence 99988876 22 233344667778888888877543322110000 00 1112233457788
Q ss_pred HhcCCHHHHHHHHHHhccHHHHH-HHHhhcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 000162 1025 YQLNDKKSMMKFVKAFHSMDLMR-NFLKSKSCFDELLVLEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1025 lklgD~~~Am~~vk~~~s~d~aa-~fL~k~~~~dEaiell~kaG~f~EA~~iAkq 1078 (1987)
...|+++.|...+...-...... ........+.....++...|++++|...+.+
T Consensus 274 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 89999999988776432211100 0000011233455667777888888776665
No 67
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.79 E-value=0.0011 Score=77.86 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAK 869 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAg 869 (1987)
..+.-|..+|..+...|+++.|..+|.++-
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 125 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCL 125 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 466777788888888888888888887653
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.77 E-value=0.0027 Score=75.08 Aligned_cols=270 Identities=15% Similarity=0.093 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccch-----hHHHHHhhhHHhhh-hhhcCChHHHHHHHHHHHHHHHHcCCH--
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYW-----EGRSKATGLKAASD-HIRSSNPLEANVILREAANIFEAIGKA-- 914 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~l-----a~la~A~~l~~aA~-~l~s~~~~ea~~~y~eAAelYe~~G~~-- 914 (1987)
..|..+|..++..|+|+.|..+|.++-.... ...+.+. ...+. .....+...+...+.+|.+++.+.+..
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 125 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS--GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 125 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc
Confidence 4577888888888888888888887533110 0001110 00011 112234455555566666665555442
Q ss_pred -----HHHHHHHHHhCC--------------------HHHHHHHHHH-------hcC----hhHHHHHHHHHHHcCCHHH
Q 000162 915 -----DSAAKCFYDLGE--------------------YERAGKIYEE-------RCG----KPELEKAGECFFLAGQYKH 958 (1987)
Q Consensus 915 -----dkAAk~y~kaGd--------------------yekA~eLy~e-------~~~----~~ll~~aAe~fE~agqy~k 958 (1987)
..-+.+|...|+ |++|.+.+.+ ... ...+...|..+...|+|++
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 205 (406)
T 3sf4_A 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 205 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHH
T ss_pred hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHH
Confidence 122445555555 5555555443 211 1246778999999999999
Q ss_pred HHHHHHhc-------CC-------HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 000162 959 AAEVYARG-------NF-------FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHY 1024 (1987)
Q Consensus 959 AAeLYeKa-------Gd-------~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~y 1024 (1987)
|.+.|.++ ++ +.....+|...+++++|..+.++..+....... .. .....+...+..|
T Consensus 206 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~-~~~~~~~~la~~~ 277 (406)
T 3sf4_A 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-------RA-VEAQSCYSLGNTY 277 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------HH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-------ch-HHHHHHHHHHHHH
Confidence 99888776 22 233345677888888888877643321110000 00 1112233457788
Q ss_pred HhcCCHHHHHHHHHHhccHHHHHHHHhhcC-------CHHHHHHHHHHhCCHHHHHHHHHHcCCHHHHHHHHHHcCCHHH
Q 000162 1025 YQLNDKKSMMKFVKAFHSMDLMRNFLKSKS-------CFDELLVLEEEAGNFMDAANIARLTGDILLTADLLQKAGNFKE 1097 (1987)
Q Consensus 1025 lklgD~~~Am~~vk~~~s~d~aa~fL~k~~-------~~dEaiell~kaG~f~EA~~iAkq~Gd~l~Aae~L~kAg~fde 1097 (1987)
...|+++.|+..+...- +...+.+ .+.....++...|++++|...+++. .++....+....
T Consensus 278 ~~~g~~~~A~~~~~~a~------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~ 345 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHL------AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH------LEISREVGDKSG 345 (406)
T ss_dssp HHTTCHHHHHHHHHHHH------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHTTCHHH
T ss_pred HHhCcHHHHHHHHHHHH------HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhcCCcc
Confidence 89999999998776432 2222222 2334556777888888888776653 333333444433
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCchhhhhHHHHHHHHHH
Q 000162 1098 ACNLTLNYVLSNSLWSPGSKGWPLKQFTEKKELFEKAKS 1136 (1987)
Q Consensus 1098 A~rL~l~~~~~~~LW~~~~~g~p~k~f~~k~~ll~~a~~ 1136 (1987)
.... ...++..++..|...-+.....+....+..++.
T Consensus 346 ~~~~--~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 382 (406)
T 3sf4_A 346 ELTA--RLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382 (406)
T ss_dssp HHHH--HHHHHHHHHHHHTTSCC----------------
T ss_pred hhHH--HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 3332 445555555555555455554444444444433
No 69
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.76 E-value=0.00093 Score=74.28 Aligned_cols=154 Identities=12% Similarity=0.051 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
+..|..+|..+...|+|+.|..+|.++-...- .. ...+...+.+|...|++++|.++|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------------------~~----~~~~~~la~~~~~~~~~~~A~~~~ 94 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP------------------SS----ADAHAALAVVFQTEMEPKLADEEY 94 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------------------Ch----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55689999999999999999999987533110 00 123556677778888888888888
Q ss_pred HHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC----H------HHHHHHHHhcCChHHHHHHHHH
Q 000162 922 YDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF----F------SECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd----~------~kAIemy~kak~wd~AlrLi~q 991 (1987)
++|.++.. .....+...|..+...|++++|.++|.++-. . .....+|.+.+++++|.++.++
T Consensus 95 ------~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 95 ------RKALASDS--RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp ------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------HHHHHHCc--CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444421 1234566778888888888888888877633 1 1223345566666666666644
Q ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 992 WKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 992 y~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
..+..... .......+..|...|+++.|...+..
T Consensus 167 ~~~~~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 167 SLRLNRNQ--------------PSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHCSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCccc--------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33321111 00112234455666666666665553
No 70
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.76 E-value=0.0094 Score=74.27 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHH----hcCHHHHHHHHHHhcc
Q 000162 840 SSPEEWKSRGIKLFY----ENNYEMATICFEKAKD 870 (1987)
Q Consensus 840 stpeeWkklA~~l~~----~g~ye~A~k~F~rAgd 870 (1987)
.++.-+..+|..+.. .++++.|.+.|.++-+
T Consensus 109 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 109 GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 456666666666666 5667777777766544
No 71
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00062 Score=74.87 Aligned_cols=96 Identities=10% Similarity=0.022 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHh
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFFSECLAVCSR 978 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~k 978 (1987)
..+.+.++...+.|+++-|.+||.++|+|.+..-+|.-.++.+.+.+.|+..+..|++.-|-..|...|++++|++++.+
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46888899999999999999999999999999999988777788999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhhh
Q 000162 979 GELFDIGLQYINYWKQ 994 (1987)
Q Consensus 979 ak~wd~AlrLi~qy~~ 994 (1987)
.++|.+|.-+++.|..
T Consensus 115 ~~r~~eA~~~A~t~g~ 130 (177)
T 3mkq_B 115 GGSLPLAYAVAKANGD 130 (177)
T ss_dssp TTCHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHcCc
Confidence 9999999999976655
No 72
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.63 E-value=0.0015 Score=77.17 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
...+.-|..+|..+...|+|+.|..+|.++-.
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 35788999999999999999999999998643
No 73
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.62 E-value=0.0017 Score=72.96 Aligned_cols=85 Identities=11% Similarity=0.003 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCH---------HH
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFF---------SE 971 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~---------~k 971 (1987)
+...+.+|...|++++|+++| ++|.++.. .....+...|.++...|+|++|.+.|.++=.. ..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~------~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 148 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQY------QAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------HHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHH------HHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 334444455555555555555 33333311 11356778888888889999999888887321 11
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 000162 972 CLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy~~ 994 (1987)
+..+|.. +++++|.+..++..+
T Consensus 149 ~~~~~~~-~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 149 GQAYYYN-KEYVKADSSFVKVLE 170 (272)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 2133333 477878777755443
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.60 E-value=0.0038 Score=74.92 Aligned_cols=200 Identities=13% Similarity=0.063 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
.-+..+|..+...|+++.|..+|.+|-+.... ... ........+...|..|...|++++|.++|
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~-----~~~----------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~- 205 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQN-----HPL----------YSIRTIQSLFVIAGNYDDFKHYDKALPHL- 205 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----STT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-----CCC----------chhhHHHHHHHHHHHHHHhCCHHHHHHHH-
Confidence 45688999999999999999999987542110 000 00112234566777888888888888887
Q ss_pred HhCCHHHHHHHHHHhcCh----hHHHHHHHHHHHcCCHHHHHHHHHhcCC-------H------HHHHHHHHhcCChHHH
Q 000162 923 DLGEYERAGKIYEERCGK----PELEKAGECFFLAGQYKHAAEVYARGNF-------F------SECLAVCSRGELFDIG 985 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~~----~ll~~aAe~fE~agqy~kAAeLYeKaGd-------~------~kAIemy~kak~wd~A 985 (1987)
++|++++.+.... ..+...|.++...|++++|.+.|.++-. . -....+|.+.+++++|
T Consensus 206 -----~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 280 (378)
T 3q15_A 206 -----EAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280 (378)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHH
Confidence 6677776653332 2366788888888888888888877622 2 2233466777888888
Q ss_pred HHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHH
Q 000162 986 LQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLND---KKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVL 1062 (1987)
Q Consensus 986 lrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD---~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiel 1062 (1987)
..+.++-.+........ . .. ..+...+..|...++ +..|+..+.....+......+ ..+..+
T Consensus 281 ~~~~~~al~~~~~~~~~--~---~~----~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~------~~la~~ 345 (378)
T 3q15_A 281 FQFIEEGLDHITARSHK--F---YK----ELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACA------RSAAAV 345 (378)
T ss_dssp HHHHHHHHHHCCTTCCS--C---HH----HHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCH--H---HH----HHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHH------HHHHHH
Confidence 88776533321110000 0 00 012233456677777 666666666555544433332 245666
Q ss_pred HHHhCCHHHHHHHHHH
Q 000162 1063 EEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1063 l~kaG~f~EA~~iAkq 1078 (1987)
+...|++++|...+++
T Consensus 346 y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 346 FESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 7777777777766655
No 75
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.57 E-value=0.0026 Score=67.58 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=98.0
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
+.++..|..+|..+...|+|+.|+.+|.++=.. +|.. ...+...|.+|.+.|++++|+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---------------------~p~~-~~~~~~la~~~~~~~~~~~a~ 59 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---------------------DPNN-VETLLKLGKTYMDIGLPNDAI 59 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------CTTC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 567889999999999999999999999976321 0100 123455677777788888887
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcC-----CH---HHHHHHHHhcCChHHHHHHHH
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGN-----FF---SECLAVCSRGELFDIGLQYIN 990 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaG-----d~---~kAIemy~kak~wd~AlrLi~ 990 (1987)
+++ .++..... .....+...|..+...++++.|.+.|.++- +. .....+|.+.++|++|++..+
T Consensus 60 ~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 60 ESL------KKFVVLDT--TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp HHH------HHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH------HHHHhcCc--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 777 33333311 113446677888888888888888877761 11 223346667777777777765
Q ss_pred HhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000162 991 YWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVK 1038 (1987)
Q Consensus 991 qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk 1038 (1987)
+..+....+ . ......+..|.+.|++++|++.++
T Consensus 132 ~~l~~~p~~-------~-------~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 132 KTISIKPGF-------I-------RAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp HHHHHCTTC-------H-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcchh-------h-------hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 443322211 0 111233567778888888777655
No 76
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.55 E-value=0.0015 Score=74.77 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
...+..|..+|..+...|+++.|..+|.++-.
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 83 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARM 83 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34778899999999999999999999998643
No 77
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.52 E-value=0.0097 Score=69.65 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHH
Q 000162 847 SRGIKLFYENNYEMATICFEK 867 (1987)
Q Consensus 847 klA~~l~~~g~ye~A~k~F~r 867 (1987)
.+|..++..|+++.|...+..
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~ 59 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP 59 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT
T ss_pred HHHHHHHHCCCHHHHHHHhcc
Confidence 345555555666666555543
No 78
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.51 E-value=0.049 Score=67.80 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=76.0
Q ss_pred hcCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCC
Q 000162 838 VASSPEEWKSRGIKLFY----ENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGK 913 (1987)
Q Consensus 838 ~~stpeeWkklA~~l~~----~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~ 913 (1987)
...+++.+..+|..++. .++++.|..+|.++-+..........+..-....-...+...+...|.+|++ .|.
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~ 110 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL----KGL 110 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCC
Confidence 34566777777877777 7788888888887644211111111110000000012333444444444443 132
Q ss_pred HHH---HHHHHHH----hCCHHHHHHHHHHhc---ChhHHHHHHHHHHH----cCCHHHHHHHHHhc---CCHHHHH---
Q 000162 914 ADS---AAKCFYD----LGEYERAGKIYEERC---GKPELEKAGECFFL----AGQYKHAAEVYARG---NFFSECL--- 973 (1987)
Q Consensus 914 ~dk---AAk~y~k----aGdyekA~eLy~e~~---~~~ll~~aAe~fE~----agqy~kAAeLYeKa---Gd~~kAI--- 973 (1987)
..- -+.+|.. .+++++|++.|++.. ....+...|.+|.. .+++++|.+.|.++ |+.....
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 211 1344544 456666666655422 23446667777777 67788888777765 3332221
Q ss_pred HHHHh----cCChHHHHHHHHH
Q 000162 974 AVCSR----GELFDIGLQYINY 991 (1987)
Q Consensus 974 emy~k----ak~wd~AlrLi~q 991 (1987)
.+|.. .+++++|++..++
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHH
Confidence 23444 4566666666543
No 79
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.51 E-value=0.00082 Score=73.83 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
.++..|..+|..++..|+|+.|..+|.++-...- .+ ...+...+..|...|++++|++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~------------------~~----~~~~~~la~~~~~~~~~~~A~~ 78 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK------------------ED----AIPYINFANLLSSVNELERALA 78 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT------------------TC----HHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc------------------cc----HHHHHHHHHHHHHcCCHHHHHH
Confidence 3556677778888888888888877776532100 00 1123445556666666666666
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HHHHHHHHHhcCChHHHHHHHHH
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF---FSECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~kAIemy~kak~wd~AlrLi~q 991 (1987)
+| +++.++.. .....+...|..+...|++++|.++|.++ .+ +.....++.+.+++++|..+.++
T Consensus 79 ~~------~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 79 FY------DKALELDS--SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HH------HHHHHcCC--cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66 33443311 11234555666666666666666666654 11 12223345555666666655544
Q ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000162 992 WKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVK 1038 (1987)
Q Consensus 992 y~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk 1038 (1987)
..+....+ . ......+..|...|+++.|+..+.
T Consensus 151 ~~~~~~~~-------~-------~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 151 AVELNEND-------T-------EARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHCTTC-------H-------HHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHhCCcc-------H-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33221111 0 011233456666777777766555
No 80
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.49 E-value=0.0018 Score=74.34 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHHhc-CHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 841 SPEEWKSRGIKLFYEN-NYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g-~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
++..|..+|..+...| +++.|..+|.++-...- .. ...+...+.+|...|++++|++
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~------------------~~----~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK------------------TY----GPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT------------------TC----THHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC------------------cc----HHHHHHHHHHHHHccCHHHHHH
Confidence 4556666666666666 66666666665432100 00 0124455566666666666666
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC--------HHHHHHHHHhcCChHHHHHHHHH
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF--------FSECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd--------~~kAIemy~kak~wd~AlrLi~q 991 (1987)
+| ++|.++... ....+...|..+...|++++|.++|.++-. +.....+|...++|++|..+.++
T Consensus 147 ~~------~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 147 AY------FTAAQLMKG--CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HH------HHHHHHTTT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH------HHHHHhccc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 66 444444211 124456688888889999999998888611 13344567788888888888765
Q ss_pred hhhcccccch--hhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCH
Q 000162 992 WKQHVDTDVG--LVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNF 1069 (1987)
Q Consensus 992 y~~~~e~e~~--~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f 1069 (1987)
..+....... ..+.. ...+...+..|...|+++.|+..+...-.... .....+.....++...|++
T Consensus 219 a~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKW-------EPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-----QNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp HHHHHTTTSCSCTTTTC-------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCSHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhccccccccHH-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-----cchHHHHHHHHHHHHhccH
Confidence 4332110000 00000 01222346778899999999987774322110 0111234456777888888
Q ss_pred HHHHHHHHHc
Q 000162 1070 MDAANIARLT 1079 (1987)
Q Consensus 1070 ~EA~~iAkq~ 1079 (1987)
++|.+.+++.
T Consensus 287 ~~A~~~~~~a 296 (330)
T 3hym_B 287 ENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 81
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.001 Score=73.35 Aligned_cols=170 Identities=14% Similarity=0.102 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH-
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA- 918 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA- 918 (1987)
..+.-|..+|..+...|+|+.|..+|.++-...-... .+.......+...+..|...|++++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 100 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------------ADYKVISKSFARIGNAYHKLGDLKKTIE 100 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc---------------cchHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 6788999999999999999999999998643111000 000001122333444444444444443
Q ss_pred ------------HHHHHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HHHHH
Q 000162 919 ------------KCFYDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG-----NF---FSECL 973 (1987)
Q Consensus 919 ------------k~y~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~kAI 973 (1987)
.++.+.|++++|.+.+.+... ...+...|.++...|+|++|.+.|.++ .+ +....
T Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 180 (258)
T 3uq3_A 101 YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180 (258)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 344555667777766655211 234667888888888888888888876 11 23344
Q ss_pred HHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000162 974 AVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVK 1038 (1987)
Q Consensus 974 emy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk 1038 (1987)
.+|.+.+++++|.+..++..+..... . ..+...+..|...|+++.|+..+.
T Consensus 181 ~~~~~~~~~~~A~~~~~~al~~~~~~-------~-------~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 181 AALAKLMSFPEAIADCNKAIEKDPNF-------V-------RAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-------H-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCHHH-------H-------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56677778888877775543322111 0 111223556667777777666554
No 82
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.45 E-value=0.0017 Score=72.14 Aligned_cols=154 Identities=13% Similarity=0.032 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
++..|..+|..+...|+++.|..+|.++=... |.. ...+...+..|.+.|++++|+.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------p~~-~~a~~~lg~~~~~~g~~~~A~~~ 61 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN---------------------PQD-PEALYWLARTQLKLGLVNPALEN 61 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---------------------SSC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 56778999999999999999999999753210 000 11345666777788888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHc-----------CCHHHHHHHHHhc-----CCH---HHHHHHHHhcCC
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLA-----------GQYKHAAEVYARG-----NFF---SECLAVCSRGEL 981 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~a-----------gqy~kAAeLYeKa-----Gd~---~kAIemy~kak~ 981 (1987)
| ++|+++... ....+...|..+... |++++|.+.|.++ ++. .....+|...++
T Consensus 62 ~------~~al~~~P~--~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 62 G------KTLVARTPR--YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp H------HHHHHHCTT--CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred H------HHHHHhCCC--cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 7 566655211 124466677777777 7888888777776 121 122235566677
Q ss_pred hHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 982 FDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 982 wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
+++|+...++-.+.. .+ .......+..|...|++++|+..++.
T Consensus 134 ~~~A~~~~~~al~~~-~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 134 RDKAEASLKQALALE-DT--------------PEIRSALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHHHHHHHHHHHHHC-CC--------------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcc-cc--------------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777776664433321 11 01112335667778888888776663
No 83
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.45 E-value=0.0071 Score=65.15 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
.+..|..+|..++..|+++.|..+|.++-...- .+ ...+...+.+|...|++++|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~----~~~~~~l~~~~~~~~~~~~A~~~ 64 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP------------------KN----ELAWLVRAEIYQYLKVNDKAQES 64 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc------------------cc----hHHHHHHHHHHHHcCChHHHHHH
Confidence 456788999999999999999999987533110 00 11344566777777777777777
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHc-CCHHHHHHHHHhcCC----------HHHHHHHHHhcCChHHHHHHH
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLA-GQYKHAAEVYARGNF----------FSECLAVCSRGELFDIGLQYI 989 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~a-gqy~kAAeLYeKaGd----------~~kAIemy~kak~wd~AlrLi 989 (1987)
| ++|.++.. .....+...|.++... |++++|.++|.++-. +.....++.+.+++++|....
T Consensus 65 ~------~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 65 F------RQALSIKP--DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp H------HHHHHHCT--TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred H------HHHHHhCC--CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7 44444321 1134456677777777 777777777766522 122233455556666666655
Q ss_pred HH
Q 000162 990 NY 991 (1987)
Q Consensus 990 ~q 991 (1987)
++
T Consensus 137 ~~ 138 (225)
T 2vq2_A 137 KR 138 (225)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 84
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.40 E-value=0.0082 Score=66.57 Aligned_cols=188 Identities=14% Similarity=0.069 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----C
Q 000162 893 NPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----N 967 (1987)
Q Consensus 893 ~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----G 967 (1987)
+|......+...|..|...|++++|.++| ++|.++.. .....+...|..+...|++++|.++|.++ .
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~------~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPL------RKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44444456777788888899999999988 45554421 12355778899999999999999999886 2
Q ss_pred CH---HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHH
Q 000162 968 FF---SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMD 1044 (1987)
Q Consensus 968 d~---~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d 1044 (1987)
+. .....+|...+++++|.++.++..+.. .. +... ......+..|...|+++.|+..+...-...
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~----~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDT-LY----PERS-------RVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT-TC----TTHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc-cC----cccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 234557888999999999987655410 10 0000 112234667888999999998777422111
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc----C-C---HHHHHHHHHHcCCHHHHHHHHHHH
Q 000162 1045 LMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT----G-D---ILLTADLLQKAGNFKEACNLTLNY 1105 (1987)
Q Consensus 1045 ~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~----G-d---~l~Aae~L~kAg~fdeA~rL~l~~ 1105 (1987)
. .....+...+.++...|++++|...+.+. . . +...+..+...|++++|.+.+...
T Consensus 172 ~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 172 R-----NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp S-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred c-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 0 00111344567778888999988888764 1 1 223366677789999998875544
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.37 E-value=0.0086 Score=66.61 Aligned_cols=161 Identities=15% Similarity=0.088 Sum_probs=95.5
Q ss_pred HhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHH
Q 000162 854 YENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKI 933 (1987)
Q Consensus 854 ~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eL 933 (1987)
..++++.|..+|.+|=..... ....+.......+...+..|...|++++|+++| ++|+++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~al~~ 72 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEK--------------TSGHDHPDVATMLNILALVYRDQNKYKEAAHLL------NDALAI 72 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHH--------------HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH------HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH--------------hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHH------HHHHHH
Confidence 347778888888765442110 001111122334667778888888888888888 666666
Q ss_pred HHHhcC------hhHHHHHHHHHHHcCCHHHHHHHHHhcCCH----------------HHHHHHHHhcCChHHHHHHHHH
Q 000162 934 YEERCG------KPELEKAGECFFLAGQYKHAAEVYARGNFF----------------SECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 934 y~e~~~------~~ll~~aAe~fE~agqy~kAAeLYeKaGd~----------------~kAIemy~kak~wd~AlrLi~q 991 (1987)
+.+..+ ...+...|.++...|+|++|.++|.++-.. .....+|...+++++|.++.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 152 (283)
T 3edt_B 73 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR 152 (283)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 654311 234677888888889999888888876322 1233466777888888887764
Q ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 000162 992 WKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAF 1040 (1987)
Q Consensus 992 y~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~ 1040 (1987)
..+......+. . .......+...+..|...|+++.|+..+...
T Consensus 153 al~~~~~~~~~--~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 153 ALEIYATRLGP--D----DPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHSCT--T----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--C----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33321000000 0 0001112334467888899999998877753
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.33 E-value=0.01 Score=67.24 Aligned_cols=170 Identities=11% Similarity=0.044 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhc--C----hhHHHHHHHHHHHcCCHHHHHHHHHhcCCH--
Q 000162 898 NVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERC--G----KPELEKAGECFFLAGQYKHAAEVYARGNFF-- 969 (1987)
Q Consensus 898 ~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~--~----~~ll~~aAe~fE~agqy~kAAeLYeKaGd~-- 969 (1987)
...+...+..|...|++++|+++| ++|.+++.+.. . ...+...|.++...|+|++|.++|.++-..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~------~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLC------KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345677788888889999999888 66666655432 1 234677888999999999999888876221
Q ss_pred --------------HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000162 970 --------------SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMK 1035 (1987)
Q Consensus 970 --------------~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~ 1035 (1987)
.....+|...+++++|.++.++..+......+. . .......+...+..|...|+++.|++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~----~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK--D----HPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT--T----CHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC--C----ChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122345667788888888775433221000000 0 00011123345778899999999998
Q ss_pred HHHHhccHHHHH---HHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc
Q 000162 1036 FVKAFHSMDLMR---NFLKSKSCFDELLVLEEEAGNFMDAANIARLT 1079 (1987)
Q Consensus 1036 ~vk~~~s~d~aa---~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~ 1079 (1987)
.+...-..-... ..-.....+.....++...|++++|...+.+.
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 877432220000 00000112334556777888888887777664
No 87
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.013 Score=66.34 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHH----
Q 000162 839 ASSPEEWKSRGIKLFY----ENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEA---- 910 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~----~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~---- 910 (1987)
...+.-|..+|..+.. .++++.|..+|.++-+.. + ...+...+.+|..
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------------------~----~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------------------Y----SNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------C----HHHHHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------------------C----HHHHHHHHHHHhCCCCc
Confidence 4577889999999999 999999999999874421 0 1124456667777
Q ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHH----cCCHHHHHHHHHhc---CCHHH---HHHHHHh--
Q 000162 911 IGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFL----AGQYKHAAEVYARG---NFFSE---CLAVCSR-- 978 (1987)
Q Consensus 911 ~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~----agqy~kAAeLYeKa---Gd~~k---AIemy~k-- 978 (1987)
.|++++|+++| ++|++. .....+...|..+.. .+++++|.+.|.++ ++... ...+|..
T Consensus 91 ~~~~~~A~~~~------~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 91 SQNTNKALQYY------SKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 160 (273)
T ss_dssp CCCHHHHHHHH------HHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHH------HHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCC
Confidence 78888888877 344433 234557778888888 88888888888776 33221 1224444
Q ss_pred --cCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 000162 979 --GELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQ----LNDKKSMMKFVK 1038 (1987)
Q Consensus 979 --ak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylk----lgD~~~Am~~vk 1038 (1987)
.+++++|+...++-.+.... .-....+..|.. .+|++.|+..++
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~~~----------------~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLKDS----------------PGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 56677776666443322110 011123455666 777777776655
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.28 E-value=0.0072 Score=67.24 Aligned_cols=130 Identities=14% Similarity=0.066 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
+..|..+|..+...|+|+.|..+|.++-.... . ....+.......+...+.+|...|++++|+++|
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 108 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIRE-----K---------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----H---------HTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-----H---------HcCCcchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 45688999999999999999999997643210 0 000011122334566677777777888877777
Q ss_pred HHhCCHHHHHHHHHHhcC------hhHHHHHHHHHHHcCCHHHHHHHHHhcCCH----------H------HHHHHHHhc
Q 000162 922 YDLGEYERAGKIYEERCG------KPELEKAGECFFLAGQYKHAAEVYARGNFF----------S------ECLAVCSRG 979 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~------~~ll~~aAe~fE~agqy~kAAeLYeKaGd~----------~------kAIemy~ka 979 (1987)
++|++++++..+ ...+...|.++...|+|++|.++|.++-.. . ....+|...
T Consensus 109 ------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 109 ------KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp ------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 555655544211 133666777777778888777777665221 1 123355666
Q ss_pred CChHHHHHHHHH
Q 000162 980 ELFDIGLQYINY 991 (1987)
Q Consensus 980 k~wd~AlrLi~q 991 (1987)
+++++|.++.++
T Consensus 183 g~~~~A~~~~~~ 194 (283)
T 3edt_B 183 GKYQDAETLYKE 194 (283)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777776654
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.25 E-value=0.0091 Score=66.45 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
.+++.|..+|..++..|+|+.|+.+|.++-...- .++. ....+...|..|.+.|++++|++
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p------------------~~~~-~~~a~~~lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYP------------------FGPY-SQQVQLDLIYAYYKNADLPLAQA 62 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------------TSTT-HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------CChH-HHHHHHHHHHHHHhcCCHHHHHH
Confidence 4678899999999999999999999997533100 0000 11234566788888899999998
Q ss_pred HHHHhCCHHHHHHHHHHhcC-hhHHHHHHHHHHHc
Q 000162 920 CFYDLGEYERAGKIYEERCG-KPELEKAGECFFLA 953 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~-~~ll~~aAe~fE~a 953 (1987)
+| +++++.+.+... ...+..+|.++...
T Consensus 63 ~~------~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 63 AI------DRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HH------HHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HH------HHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 88 566655433111 01345566666553
No 90
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.24 E-value=0.0086 Score=63.55 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc----CCH----HH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----NFF----SE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----Gd~----~k 971 (1987)
.|...|..|.+.|++++|+++| ++|+++-. .....+...|.++...|++++|.+.|.++ .+. ..
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~------~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 78 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAY------KKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------HHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHH
Confidence 4677888999999999999998 66776621 12355778899999999999999988876 111 22
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 972 CLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
...++...++++.+.....+..+....+ . ......+..|.+.|++++|++.++.
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~-------~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVY-------A-------DAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccc-------h-------HHHHHHHHHHHHhCCchhHHHHHHH
Confidence 2335566677777776665433322111 0 1112335667777888877776653
No 91
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.24 E-value=0.0046 Score=72.52 Aligned_cols=172 Identities=11% Similarity=-0.024 Sum_probs=100.2
Q ss_pred HHHHHHhCCHHHHHHHHHHh-----cChhHHHHHHHHHHHcCCHHHHHHHHHhcCCHH---------H------------
Q 000162 918 AKCFYDLGEYERAGKIYEER-----CGKPELEKAGECFFLAGQYKHAAEVYARGNFFS---------E------------ 971 (1987)
Q Consensus 918 Ak~y~kaGdyekA~eLy~e~-----~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~~---------k------------ 971 (1987)
+.+|...|++++|.+.+.+. .....+...|.++...|++++|.+.|.++-... .
T Consensus 105 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 45555556666666555542 113457788888999999999999888751100 0
Q ss_pred --HHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHH
Q 000162 972 --CLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNF 1049 (1987)
Q Consensus 972 --AIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~f 1049 (1987)
.+..+...+++++|..+.++..+...... ....+...+..|...|+++.|+..+...-..+.
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---- 248 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSI------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP---- 248 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----
Confidence 12233367778888877765433221100 001222346678888999999887764221110
Q ss_pred HhhcCCHHHHHHHHHHhCCHHHHHHHHHHc----CC----HHHHHHHHHHcCCHHHHHHHHHHHH
Q 000162 1050 LKSKSCFDELLVLEEEAGNFMDAANIARLT----GD----ILLTADLLQKAGNFKEACNLTLNYV 1106 (1987)
Q Consensus 1050 L~k~~~~dEaiell~kaG~f~EA~~iAkq~----Gd----~l~Aae~L~kAg~fdeA~rL~l~~~ 1106 (1987)
.....+-....++...|++++|...+.+. ++ +..-+..+.+.|++++|...+....
T Consensus 249 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 249 -NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00011233456677788888887777664 22 2223667777889988888755443
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.15 E-value=0.057 Score=64.01 Aligned_cols=128 Identities=8% Similarity=0.078 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhc-------CC------HHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHH
Q 000162 943 LEKAGECFFLAGQYKHAAEVYARG-------NF------FSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEI 1009 (1987)
Q Consensus 943 l~~aAe~fE~agqy~kAAeLYeKa-------Gd------~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a 1009 (1987)
+...|..+...|++++|.++|.++ ++ +.....++...+++++|...+++-....... +. . .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~-~----~ 211 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KY-H----S 211 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CC-C----H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-Cc-c----h
Confidence 556888899999999999998876 11 2233446678888998888876543221100 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 000162 1010 NKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1010 ~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq 1078 (1987)
.... .....-+..+...|+++.|...+.............. ...+.....++...|++++|...+.+
T Consensus 212 ~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~l~~ 278 (373)
T 1hz4_A 212 DWIS-NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL-QGQWRNIARAQILLGEFEPAEIVLEE 278 (373)
T ss_dssp HHHH-HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0000 0001123456788999999888775432210000000 00123445677778888888776665
No 93
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.07 E-value=0.0048 Score=68.55 Aligned_cols=174 Identities=16% Similarity=0.041 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHH
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SEC 972 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kA 972 (1987)
+...+..|.+.|++++|+.+| ++|+++.. .....+...|..+...|++++|.+.|.++ ++. ...
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~------~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLF------ERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------HHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 445667777788888888877 45554311 11355778999999999999999999987 221 223
Q ss_pred HHHHHhc-----------CChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 000162 973 LAVCSRG-----------ELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFH 1041 (1987)
Q Consensus 973 Iemy~ka-----------k~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~ 1041 (1987)
..++.+. +++++|+...++-.+....+ . .....-+..|...|++++|+..++..-
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~-------~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------A-------PLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------H-------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------H-------HHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3456666 88888888775543322211 0 111233667888999999988776421
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc----CCHHHH----HHHHHHcCCHHHHHHHH
Q 000162 1042 SMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT----GDILLT----ADLLQKAGNFKEACNLT 1102 (1987)
Q Consensus 1042 s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~----Gd~l~A----ae~L~kAg~fdeA~rL~ 1102 (1987)
..+ .....+-....++...|++++|...+++. ++...+ +..+...|++++|...+
T Consensus 146 ~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 146 ALE------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------
T ss_pred hcc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 111 00111234556778888999888877764 222222 55566668888887654
No 94
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.05 E-value=0.01 Score=65.04 Aligned_cols=156 Identities=15% Similarity=0.067 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
..+..|..+|..+...|+++.|..+|.++-...- .+ ...+...+.+|...|++++|.+
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------------~~----~~~~~~la~~~~~~~~~~~A~~ 112 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDS------------------SA----ATAYYGAGNVYVVKEMYKEAKD 112 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------cc----hHHHHHHHHHHHHhccHHHHHH
Confidence 3678899999999999999999999987643210 00 1234556777778888888888
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HHHHHHHHHhcCChHHHHHHHHH
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF---FSECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~kAIemy~kak~wd~AlrLi~q 991 (1987)
+| +++.++.. .....+...|.++...|++++|.++|.++ .+ +.....+|.+.+++++|..+.++
T Consensus 113 ~~------~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 113 MF------EKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HH------HHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HH------HHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87 44444421 12345777888889999999999988876 11 12334467778888888888765
Q ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 992 WKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 992 y~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
..+....+ ...+...+..|...|+++.|...++.
T Consensus 185 ~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 185 VTEQDPGH--------------ADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHCTTC--------------HHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHhCccc--------------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44332111 01122345677778888877766553
No 95
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.02 E-value=0.018 Score=59.57 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
.-|..+|..+...|+++.|..+|.++-...- .+ ...+...+..|...|++++|.++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~A~~~~- 65 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA------------------FD----VDVALHLGIAYVKTGAVDRGTELL- 65 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS------------------CC----HHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------------------cC----hHHHHHHHHHHHHcCCHHHHHHHH-
Confidence 4567788999999999999999987644211 00 123445666777777777777777
Q ss_pred HhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 923 DLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
+++.++.. .....+...|..+...|++++|.++|.++ .+. .....++.+.+++++|.++.++..+
T Consensus 66 -----~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 66 -----ERSLADAP--DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp -----HHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 44444311 11344666778888888888888877765 111 2233456667777777777654433
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000162 995 HVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVK 1038 (1987)
Q Consensus 995 ~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk 1038 (1987)
....+ .......+..|...|+++.|.+.+.
T Consensus 139 ~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 139 LRPNE--------------GKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCccc--------------hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 21111 0112233556667777777766554
No 96
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.01 E-value=0.0048 Score=62.98 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
..|+.+|..++++|+|+.|+.+|.+|=.. +|.. ...+...|..|.+.|++++|+++|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------------------~p~~-~~~~~nlg~~~~~~~~~~~A~~~~- 65 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------------------DPSN-ITFYNNKAAVYFEEKKFAECVQFC- 65 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC-HHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCC-HHHHHhHHHHHHHhhhHHHHHHHH-
Confidence 45789999999999999999999976321 1111 123566788899999999999998
Q ss_pred HhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 923 DLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
++|+++..+... -..+...|.++...|+|++|.+.|.+
T Consensus 66 -----~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 66 -----EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp -----HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 778877655221 12355566667777777777666554
No 97
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.99 E-value=0.056 Score=60.27 Aligned_cols=207 Identities=13% Similarity=-0.019 Sum_probs=123.1
Q ss_pred HHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHH
Q 000162 853 FYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGK 932 (1987)
Q Consensus 853 ~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~e 932 (1987)
..+++|+.|...|.++-.... .++......+...+..|...|++++|.++| ++|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~------~~al~ 71 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRA------------------LTDDERAQLLYERGVLYDSLGLRALARNDF------SQALA 71 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSC------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH------HHHHH
T ss_pred CccchHHHHHHHHHHHHhccc------------------ccCchhHHHHHHHHHHHHHcccHHHHHHHH------HHHHH
Confidence 344888999999986644210 011122334667788888889999999888 56665
Q ss_pred HHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHHHHHHHhcCChHHHHHHHHHhhhcccccchhhh
Q 000162 933 IYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVR 1004 (1987)
Q Consensus 933 Ly~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ 1004 (1987)
+.. .....+...|.++...|+|++|.++|.++ ++. -....+|.+.+++++|.++.++..+.......
T Consensus 72 ~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--- 146 (275)
T 1xnf_A 72 IRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--- 146 (275)
T ss_dssp HCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred cCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH---
Confidence 521 12356788999999999999999999987 121 23345778889999999888765443222100
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHcC----
Q 000162 1005 RSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLTG---- 1080 (1987)
Q Consensus 1005 ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~G---- 1080 (1987)
... ... .+...|+++.|+..+...-.. .......-..+.++...+.+++|...+.+.-
T Consensus 147 ----~~~-------~~~-~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 147 ----RSL-------WLY-LAEQKLDEKQAKEVLKQHFEK------SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp ----HHH-------HHH-HHHHHHCHHHHHHHHHHHHHH------SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred ----HHH-------HHH-HHHHhcCHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 000 111 224457888888776421110 0011112223334444555556655555431
Q ss_pred --------CHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000162 1081 --------DILLTADLLQKAGNFKEACNLTLNYV 1106 (1987)
Q Consensus 1081 --------d~l~Aae~L~kAg~fdeA~rL~l~~~ 1106 (1987)
-+..-+..+...|++++|...+-.-.
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12233677788899999988855443
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.99 E-value=0.013 Score=66.19 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=83.3
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
..+++.+..+|..++..|+|+.|+.+|.++-...- .++ .....+...|..|.+.|++++|+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------------------~~~-~~~~a~~~lg~~~~~~~~~~~A~ 72 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR------------------THE-WAADAQFYLARAYYQNKEYLLAA 72 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS------------------CST-THHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------------------CCc-chHHHHHHHHHHHHHhCcHHHHH
Confidence 45788999999999999999999999997643210 000 01123455666677777777777
Q ss_pred HHHHHhCCHHHHHHHHHHhcC-hhHHHHHHHHHHH--------cCCHHHHHHHHHhc-----C--CHHHH----------
Q 000162 919 KCFYDLGEYERAGKIYEERCG-KPELEKAGECFFL--------AGQYKHAAEVYARG-----N--FFSEC---------- 972 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~-~~ll~~aAe~fE~--------agqy~kAAeLYeKa-----G--d~~kA---------- 972 (1987)
..| +++++++.+... ...+...|.++.. .|++++|.+.|.++ + ....|
T Consensus 73 ~~~------~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~ 146 (261)
T 3qky_A 73 SEY------ERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK 146 (261)
T ss_dssp HHH------HHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHH------HHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH
Confidence 777 555555322111 2335567777777 77777777777765 1 11212
Q ss_pred --------HHHHHhcCChHHHHHHHHHhhh
Q 000162 973 --------LAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 973 --------Iemy~kak~wd~AlrLi~qy~~ 994 (1987)
..+|.+.++|++|+...++..+
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3466777777777777655433
No 99
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.96 E-value=0.025 Score=66.14 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=40.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhccHH--HHHHHHhhcCCHHHHHHHHHHhCCHHHHH-HHHH----HcCCHHHHHHHHHHcC
Q 000162 1021 ALHYYQLNDKKSMMKFVKAFHSMD--LMRNFLKSKSCFDELLVLEEEAGNFMDAA-NIAR----LTGDILLTADLLQKAG 1093 (1987)
Q Consensus 1021 A~~ylklgD~~~Am~~vk~~~s~d--~aa~fL~k~~~~dEaiell~kaG~f~EA~-~iAk----q~Gd~l~Aae~L~kAg 1093 (1987)
+..|.+.|++++|...++..-..+ .+.. +-..+.++...|++.+|+ +... ..++.....++..+.+
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~-------l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~ 279 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPET-------LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEN 279 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 556777777777777665311110 0111 122344556677776543 2222 3455566667777777
Q ss_pred CHHHHHHH
Q 000162 1094 NFKEACNL 1101 (1987)
Q Consensus 1094 ~fdeA~rL 1101 (1987)
.|++|...
T Consensus 280 ~fd~~~~~ 287 (291)
T 3mkr_A 280 DFDRLVLQ 287 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 100
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.94 E-value=0.0075 Score=79.93 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
+++-|..+|..+..+|+|++|+.+|.+|=... |.. ...+...|.+|.+.|++++|+++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---------------------P~~-~~a~~nLg~~l~~~g~~~eA~~~ 65 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---------------------PEF-AAAHSNLASVLQQQGKLQEALMH 65 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------SCC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 35678899999999999999999999763210 000 12355667888888999999988
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHHHHHHHhcCChHHHHHHHHHh
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SECLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kAIemy~kak~wd~AlrLi~qy 992 (1987)
| ++|+++-. .....+...|..+.+.|++++|.+.|.++ ++. .....+|.+.+++++|+...++-
T Consensus 66 ~------~~Al~l~P--~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 66 Y------KEAIRISP--TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp H------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8 66776621 11355778899999999999999988886 221 22233666777777777766543
No 101
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.94 E-value=0.052 Score=58.27 Aligned_cols=179 Identities=13% Similarity=-0.012 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HHH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF---FSE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~k 971 (1987)
.+...+..|...|++++|+++| +++.++.. .....+...|.++...|++++|.++|.++ .+ +..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~------~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASI------EDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH------HHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 4667778888889999998888 45555421 12356778999999999999999999987 12 123
Q ss_pred HHHHHHhc-CChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHH
Q 000162 972 CLAVCSRG-ELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFL 1050 (1987)
Q Consensus 972 AIemy~ka-k~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL 1050 (1987)
...+|... +++++|..+.++..+. .... .. .......+..|...|+++.|+..+...-....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 144 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALAD-PTYP----TP-------YIANLNKGICSAKQGQFGLAEAYLKRSLAAQP----- 144 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTS-TTCS----CH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcC-cCCc----ch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----
Confidence 44577888 9999999988765541 1110 00 01223346778889999999887764321110
Q ss_pred hhcCCHHHHHHHHHHhCCHHHHHHHHHHc----C-C----HHHHHHHHHHcCCHHHHHHHHH
Q 000162 1051 KSKSCFDELLVLEEEAGNFMDAANIARLT----G-D----ILLTADLLQKAGNFKEACNLTL 1103 (1987)
Q Consensus 1051 ~k~~~~dEaiell~kaG~f~EA~~iAkq~----G-d----~l~Aae~L~kAg~fdeA~rL~l 1103 (1987)
.....+.....++...|++++|...+.+. + . +...+..+...|++++|...+.
T Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 00111334556777888888887777653 2 2 1222444556688877766543
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.84 E-value=0.0071 Score=61.76 Aligned_cols=94 Identities=14% Similarity=0.233 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
+.|+.+|..+++.|+|+.|+.+|.++=.. +|.. ...+...|..|.+.|++++|+++|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---------------------~p~~-~~~~~~~~~~~~~~~~~~~A~~~~- 70 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---------------------DPEN-AILYSNRAACLTKLMEFQRALDDC- 70 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC-HHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCC-HHHHHHHhhHHHhhccHHHHHHHH-
Confidence 46889999999999999999999976221 0110 123556788888999999999988
Q ss_pred HhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 923 DLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|+++-. .....+...|.++...|+|++|.+.|.++
T Consensus 71 -----~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 71 -----DTCIRLDS--KFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp -----HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HHHHHhhh--hhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 67776611 11345777888888888888888877664
No 103
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.79 E-value=0.031 Score=61.55 Aligned_cols=125 Identities=12% Similarity=0.046 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
..+|+.|...|..++..|+|+.|..+|.++=...- ..++ ..+...|..|...|++++|+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----------------~~~~----~~~~~~~~~~~~~~~~~~A~ 62 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-----------------NQDS----VTAYNCGVCADNIKKYKEAA 62 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-----------------TCCH----HHHHHHHHHHHHTTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-----------------CCCc----HHHHHHHHHHHHhhcHHHHH
Confidence 34678899999999999999999999997643110 0000 12223566666666666666
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC----------HHHHHHHHHhcCChH
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF----------FSECLAVCSRGELFD 983 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd----------~~kAIemy~kak~wd 983 (1987)
++| ++|+++-.. ....+...|.++...|+|++|.+.|.++ ++ +...-.++.+.++++
T Consensus 63 ~~~------~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 63 DYF------DIAIKKNYN--LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp HHH------HHHHHTTCS--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHH------HHHHHhCcc--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 666 444433100 0234556677777777777777766665 11 222233455666666
Q ss_pred HHHHHHHHh
Q 000162 984 IGLQYINYW 992 (1987)
Q Consensus 984 ~AlrLi~qy 992 (1987)
+|++..++-
T Consensus 135 ~A~~~~~~a 143 (228)
T 4i17_A 135 KAEENYKHA 143 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666443
No 104
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.78 E-value=0.077 Score=56.48 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh----hHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGK----PELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~----~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
+...+.+|...|++++|.++| ++|.+++.+.... ..+...|..+...|++++|.+.|.+
T Consensus 29 ~~~l~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 91 (203)
T 3gw4_A 29 RFMLGYVYAFMDRFDEARASF------QALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHH------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555566666666666666 4555554442221 2244555666666666666555443
No 105
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.73 E-value=0.0052 Score=77.02 Aligned_cols=159 Identities=11% Similarity=-0.028 Sum_probs=100.5
Q ss_pred cCCHHHHHHHHHHHHHhcCH-HHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNY-EMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSA 917 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~y-e~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkA 917 (1987)
...+..|..+|..+...++| +.|..+|.++=... |.. ...+...|..|...|++++|
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---------------------p~~-~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---------------------PEL-VEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---------------------CCC-HHHHHHHHHHHHHcCCHHHH
Confidence 34788999999999999999 99999999763210 000 12355677788888888888
Q ss_pred HHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHc---------CCHHHHHHHHHhc-----CCH---HHHHHHHHhc-
Q 000162 918 AKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLA---------GQYKHAAEVYARG-----NFF---SECLAVCSRG- 979 (1987)
Q Consensus 918 Ak~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~a---------gqy~kAAeLYeKa-----Gd~---~kAIemy~ka- 979 (1987)
+++| ++|+++. .+...+...|..+... |+|++|.++|.++ ++. .....+|...
T Consensus 157 ~~~~------~~al~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 157 HTCF------SGALTHC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp HHHH------HHHHTTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHH------HHHHhhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 8888 4444442 1134566778888887 8888888888886 221 2223344444
Q ss_pred -------CChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 980 -------ELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 980 -------k~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
+++++|+...++..+..... .. ....+...+..|...|+++.|++.+..
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~p~~----~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVDRKA----SS-------NPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHCGGG----GG-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhccccchHHHHHHHHHHHHHhCCCc----cc-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777777665443321100 00 001222346677788888888876653
No 106
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.73 E-value=0.12 Score=51.78 Aligned_cols=99 Identities=12% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
..+..+|..+...|+|+.|..+|.++-.... .. .++......+...+.+|...|++++|.++|
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~- 72 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-----EF-----------GDKAAERIAYSNLGNAYIFLGEFETASEYY- 72 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HH-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----Hh-----------CCchHHHHHHHHHHHHHHHcCCHHHHHHHH-
Confidence 3567889999999999999999997654211 11 111222335667888899999999999988
Q ss_pred HhCCHHHHHHHHHHhcCh----hHHHHHHHHHHHcCCHHHHHHHH
Q 000162 923 DLGEYERAGKIYEERCGK----PELEKAGECFFLAGQYKHAAEVY 963 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~~----~ll~~aAe~fE~agqy~kAAeLY 963 (1987)
++|.+++.+..+. ..+...|..+...|+|++|.++|
T Consensus 73 -----~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 112 (164)
T 3ro3_A 73 -----KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 112 (164)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6777776653221 12344555555555555555544
No 107
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.69 E-value=0.041 Score=67.12 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
....+|......|+|++|+++|.+|-+... .... ...++. ....|...|.+|...|++++|..+|
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~-----~~~~-------~~~~~~-~~~~~~nla~~y~~~g~~~~A~~~~-- 117 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQ-----QEHA-------DQAEIR-SLVTWGNYAWVYYHMGRLSDVQIYV-- 117 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHSG-------GGCTTT-THHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----hcCc-------cccchH-HHHHHHHHHHHHHHcCChHHHHHHH--
Confidence 445789999999999999999998744211 0000 001111 1223556677888888888888877
Q ss_pred hCCHHHHHHHHHHhcC------hhHHHHHHHHHHHc--CCHHHHHHHHHhc
Q 000162 924 LGEYERAGKIYEERCG------KPELEKAGECFFLA--GQYKHAAEVYARG 966 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~------~~ll~~aAe~fE~a--gqy~kAAeLYeKa 966 (1987)
++|.++.....+ ...+...|..+... ++|++|.++|.++
T Consensus 118 ----~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ka 164 (472)
T 4g1t_A 118 ----DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164 (472)
T ss_dssp ----HHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred ----HHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 566666655322 12344444444433 4677777777776
No 108
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.015 Score=70.03 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
|.|..-...|..++++|+|++|.+.|.++-+..-.. ..+.... .............+...+.+|.+.|++++|.+
T Consensus 2 s~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~-~~~~~~~----~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~ 76 (434)
T 4b4t_Q 2 SLPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQ-SSAAAGA----SVDDKRRNEQETSILELGQLYVTMGAKDKLRE 76 (434)
T ss_dssp CSTTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCS-SSBSSSS----SBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-chhHHHH----HHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 455556678999999999999999999764311000 0000000 00000001122335667888888888888888
Q ss_pred HHHHhCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCCHHHHHHHHHhcCC--------------HHHHHHHHHhcCC
Q 000162 920 CFYDLGEYERAGKIYEERCG----KPELEKAGECFFLAGQYKHAAEVYARGNF--------------FSECLAVCSRGEL 981 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~----~~ll~~aAe~fE~agqy~kAAeLYeKaGd--------------~~kAIemy~kak~ 981 (1987)
+|.++- .+..+... .......+..+...|++++|.++|.++-. ......+|...|+
T Consensus 77 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (434)
T 4b4t_Q 77 FIPHST------EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ 150 (434)
T ss_dssp HHHHTH------HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH------HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC
Confidence 885443 22222110 01122344455555677777776665411 1234556667777
Q ss_pred hHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 982 FDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 982 wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
|++|..++++......... .+. .. .+.+..-+..|...||+..|..+++.
T Consensus 151 ~~~A~~~l~~~~~~~~~~~---~~~----~~-~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 151 YKDSLALINDLLREFKKLD---DKP----SL-VDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp HHHHHHHHHHHHHHHTTSS---CST----HH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcc---cch----hH-HHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 7777777654322111000 000 01 12223336677888888888877664
No 109
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=96.49 E-value=0.00034 Score=96.90 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=48.3
Q ss_pred CCceeeeeecccCCCCCeEEEeecCCCCCcc----hhhHHHHHHHHHhhhccCCCCCCCCChhhhhhhcccccccCcEEe
Q 000162 717 KQALVLTIVESKGLEFQDVLLYDFFGSSPLK----NQWRVVYEYMKEQALLDSTLPASFPSFNEAKHNVLCPELKQLYVA 792 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL~dFfsdspv~----~~~~~l~~~~k~q~~~~~~~~s~~p~~d~~~~~~L~~ELnLLYVA 792 (1987)
+...++|+|.+||+|||+|+|+++.++.... ..|..|. . ++. +. + -..+..|+.++|||
T Consensus 657 ~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~----~-~l~--------~~-d---r~~~eEERrLfYvA 719 (1122)
T 1w36_C 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMS----Q-KPK--------RG-D---RSRRDDDRYLFLEA 719 (1122)
T ss_dssp SSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHH----H-SCC--------TT-C---CCHHHHHHHHHHHH
T ss_pred CeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhh----c-ccC--------CC-c---hhhhHHHHHHHHHH
Confidence 3567999999999999999999988775221 1232221 0 100 00 0 01255678999999
Q ss_pred cccccccchhcc
Q 000162 793 ITRTRQRLWIWE 804 (1987)
Q Consensus 793 ITRAKk~LvIve 804 (1987)
|||||++|+|.=
T Consensus 720 ltrA~~~L~LSy 731 (1122)
T 1w36_C 720 LISAQQKLYISY 731 (1122)
T ss_dssp HHHEEEEEEEEE
T ss_pred HHhhcCeEEEEE
Confidence 999999999974
No 110
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.45 E-value=0.092 Score=58.64 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhcC----hh----HHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HHHHHHHHHh
Q 000162 915 DSAAKCFYDLGEYERAGKIYEERCG----KP----ELEKAGECFFLAGQYKHAAEVYARG-----NF---FSECLAVCSR 978 (1987)
Q Consensus 915 dkAAk~y~kaGdyekA~eLy~e~~~----~~----ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~kAIemy~k 978 (1987)
-.-+.+|...|+|++|++.+.+... .. .+...|.++...|++++|.+.|.++ .+ +.....+|..
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 3345577777777777777665322 12 2678999999999999999999887 11 2334557888
Q ss_pred cCChHHHHHHHHHhhhc
Q 000162 979 GELFDIGLQYINYWKQH 995 (1987)
Q Consensus 979 ak~wd~AlrLi~qy~~~ 995 (1987)
.++|++|+...++..+.
T Consensus 121 ~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp TTCHHHHHHHHGGGCCS
T ss_pred ccCHHHHHHHHHHHhhc
Confidence 99999999988655443
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.44 E-value=0.074 Score=61.46 Aligned_cols=103 Identities=7% Similarity=-0.112 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
....|...+..++..|+|+.|...|.++-...... .. .......+...+.+|...|++++|+++
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 137 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-PE---------------FQQFLQWQYYVAAYVLKKVDYEYCILE 137 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC-HH---------------HHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC-hh---------------HHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 34567788999999999999999998653311100 00 000111233456667777788888887
Q ss_pred HHHhCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 921 FYDLGEYERAGKIYEERCG----KPELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~----~~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
|. +|.+++.+..+ ...+...|..|...|+|++|.++|.+
T Consensus 138 ~~------~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~k 180 (293)
T 2qfc_A 138 LK------KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HH------HHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH------HHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 73 33333211111 01244455555555655555555544
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.39 E-value=0.021 Score=60.80 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
+++.|..+|..++..|+|++|..+|.++=.. +|.. ...+...+..|...|++++|+++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------------------~P~~-~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---------------------DFYN-VDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCC-HHHHHHHHHHHHHHccHHHHHHH
Confidence 4557899999999999999999999975321 0110 12355678889999999999999
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|+++-. .....+...|.+|...|++++|.+.|.++
T Consensus 93 ~------~~al~l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 93 Y------AVAFALGK--NDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp H------HHHHHHSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9 77777732 12456778899999999999998887765
No 113
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.32 E-value=0.48 Score=47.35 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh----hHHHHHHHHHHHcCCHHHHHHHH
Q 000162 897 ANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGK----PELEKAGECFFLAGQYKHAAEVY 963 (1987)
Q Consensus 897 a~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~----~ll~~aAe~fE~agqy~kAAeLY 963 (1987)
....+...+..|...|++++|+++| ++|.+++.+..+. ..+...|..+...|+|++|.+.|
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 72 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAH------EQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY 72 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHH------HHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445777888888899999999988 6677776653321 12444555555555555555544
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.31 E-value=0.067 Score=58.84 Aligned_cols=113 Identities=16% Similarity=0.078 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
.+++.+...|..++..|+|+.|..+|.++=...-. ...+....... .............|..|.+.|++++|++
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVD-----KNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSC-----TTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhc-----chhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 36778899999999999999999999986432110 01111000000 0111222234457888888899999998
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+| ++|+++..+ ....+...|..+...|++++|.+.|.++
T Consensus 76 ~~------~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 76 FY------KELLQKAPN--NVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HH------HHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HH------HHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88 666666211 2456888999999999999999999887
No 115
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.28 E-value=0.6 Score=55.14 Aligned_cols=185 Identities=8% Similarity=-0.050 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhcccchh---HHHHHhhhHHhh-hhhhcCChHHHHHHHHHHHHHHHHcCCH---HH-
Q 000162 845 WKSRGIKLFYENNYEMATICFEKAKDTYWE---GRSKATGLKAAS-DHIRSSNPLEANVILREAANIFEAIGKA---DS- 916 (1987)
Q Consensus 845 WkklA~~l~~~g~ye~A~k~F~rAgd~~la---~la~A~~l~~aA-~~l~s~~~~ea~~~y~eAAelYe~~G~~---dk- 916 (1987)
+..+|..+...|+++.|..+|.++-..... ....+......+ ......+...+...|++|.+++.+.+.. ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 456677888888898888888876431100 000000000011 1123345556666677777777665432 11
Q ss_pred -----HHHHHHHhCCHHHHHHHHHHhc---C-------hhHHHHHHHHHHHcCCHHHHHHHHHhcC-------CH--HH-
Q 000162 917 -----AAKCFYDLGEYERAGKIYEERC---G-------KPELEKAGECFFLAGQYKHAAEVYARGN-------FF--SE- 971 (1987)
Q Consensus 917 -----AAk~y~kaGdyekA~eLy~e~~---~-------~~ll~~aAe~fE~agqy~kAAeLYeKaG-------d~--~k- 971 (1987)
-+.+|...|++++|.+.+.+.. . ...+...|..+...|++++|.++|.++- .. -.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 2456677788888777766521 1 1236678999999999999999988762 11 11
Q ss_pred -----HHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000162 972 -----CLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 972 -----AIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
.+.++...+++++|.+.+++............ . . .+...+..+...|+++.|...+..
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~--~---~~~~la~~~~~~g~~~~A~~~l~~ 278 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL-----Q--G---QWRNIARAQILLGEFEPAEIVLEE 278 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG-----H--H---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh-----H--H---HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11346688899999988866543221110000 0 0 112335677788888888876653
No 116
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.26 E-value=0.15 Score=55.98 Aligned_cols=127 Identities=13% Similarity=0.014 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc----CC----HHH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----NF----FSE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----Gd----~~k 971 (1987)
.+...|..|...|++++|+++| ++|+++... .+...+...|.++...|+|++|.+.|.++ .+ +..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~------~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKY------SEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHH------HHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 4566778888899999999998 666666321 12345666999999999999999999987 12 233
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 000162 972 CLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAF 1040 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~ 1040 (1987)
...+|...+++++|+...++..+....+. .........+...+..+...|+++.|++.+...
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNA-------TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcH-------HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 44577888999999998876554332221 111112223334477888899999999988753
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.26 E-value=0.089 Score=61.34 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHH
Q 000162 839 ASSPEEWKSRGIKLFY-------ENNY-------EMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREA 904 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~-------~g~y-------e~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eA 904 (1987)
..+++.|..+|..+.. .|++ +.|..+|.+|=.. + +|. ....+...
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-----------------~---~p~-~~~~~~~~ 105 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-----------------L---LKK-NMLLYFAY 105 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-----------------T---TTT-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-----------------h---Ccc-cHHHHHHH
Confidence 5689999999998875 3665 7777777765331 0 010 01235566
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChh-HHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 905 ANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKP-ELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 905 AelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~-ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+.++++.|++++|.++| ++|+++-. .... .+...|.++...|++++|.++|.++
T Consensus 106 ~~~~~~~~~~~~A~~~~------~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIY------NRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHTTCHHHHHHHH------HHHHTSSS--SCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH------HHHHhccc--cCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77777788888888888 55554311 1122 5777788888888888888887776
No 118
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.22 E-value=0.061 Score=55.58 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcC-----CH---H
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGN-----FF---S 970 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaG-----d~---~ 970 (1987)
..+...+..|...|++++|+++|.++-... ......+...|..+...|++++|.++|.++- +. .
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 345566666667777777777774433210 0112345667788888888888888777651 11 1
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 000162 971 ECLAVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 971 kAIemy~kak~wd~AlrLi~q 991 (1987)
....++...+++++|.++.++
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~ 101 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIK 101 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 122344555555555555543
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.034 Score=55.42 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
.+.|..+|..++..|+|+.|..+|.++=...- .+ ...+...|..|...|++++|+++|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------------------~~----~~~~~~~a~~~~~~~~~~~A~~~~ 61 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP------------------ED----ARGYSNRAAALAKLMSFPEAIADC 61 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------------------CC----hHHHHHHHHHHHHhcCHHHHHHHH
Confidence 56799999999999999999999997532100 00 124566778888899999999988
Q ss_pred HHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 922 YDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|+++... ....+...|.++...|+|++|.+.|.++
T Consensus 62 ------~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 62 ------NKAIEKDPN--FVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp ------HHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HHHHHhCCC--cHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 666666211 1345667777777777777777766544
No 120
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.15 E-value=0.03 Score=74.23 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
..+...|.+|.+.|++++|+++| ++|+++.-+ ....+...|..|.+.|++++|.+.|.++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~------~kAl~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLY------RKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------HHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------HHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34677889999999999999999 777777211 1355778888999999998888888765
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.14 E-value=0.15 Score=54.10 Aligned_cols=104 Identities=13% Similarity=0.221 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
....|..+|..+...|+|+.|..+|.++-.. +...+ ++......+...+.+|...|++++|.++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQ-----AQKSG-----------DHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHTTC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----HHHcC-----------CcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567889999999999999999999976542 11110 1111223455667777777777777777
Q ss_pred HHHhCCHHHHHHHHHHhcCh-----hHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGK-----PELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~-----~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|.+++.+..+. ..+...|..+...|++++|.+.|.++
T Consensus 89 ~------~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 89 F------LEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp H------HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred H------HHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7 5666666553311 12556677777777777777766554
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.05 E-value=0.057 Score=55.36 Aligned_cols=96 Identities=17% Similarity=0.109 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
.+..|..+|..++..|+|+.|..+|.++-...- .+ ...+...+..|...|++++|+++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------------------~~----~~~~~~~a~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP------------------SN----AIYYGNRSLAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------TC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------------CC----hHHHHHHHHHHHHcCCHHHHHHH
Confidence 456789999999999999999999997643110 00 12345667778888888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|+++.. .....+...|.++...|++++|.++|.++
T Consensus 70 ~------~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 70 A------TRAIELDK--KYIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp H------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHHhCc--ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8 55655522 12355778888999999999999888776
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.05 E-value=0.24 Score=57.70 Aligned_cols=164 Identities=12% Similarity=0.055 Sum_probs=92.5
Q ss_pred HHHHHHHHHhCCHHHHHH-HHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC----HHHHHHHHHhcCChHH
Q 000162 915 DSAAKCFYDLGEYERAGK-IYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF----FSECLAVCSRGELFDI 984 (1987)
Q Consensus 915 dkAAk~y~kaGdyekA~e-Ly~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd----~~kAIemy~kak~wd~ 984 (1987)
++|..+| ++|++ +-. .....+...|..++..|++++|.++|.++ ++ +.....++.+.+.+++
T Consensus 81 ~~A~~~~------~rAl~~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 81 DEAANIY------ERAISTLLK--KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHH------HHHHTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHH------HHHHHHhCc--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHH
Confidence 6666666 55554 211 11346778888999999999999999886 22 2334455667778888
Q ss_pred HHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHH
Q 000162 985 GLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEE 1064 (1987)
Q Consensus 985 AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~ 1064 (1987)
|..+.++-.+....... + |+..+...+...|+++.|+..+...-... -.....+...++++.
T Consensus 153 A~~~~~~a~~~~p~~~~-------~------~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~ 214 (308)
T 2ond_A 153 GRMIFKKAREDARTRHH-------V------YVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIPEYVLAYIDYLS 214 (308)
T ss_dssp HHHHHHHHHTSTTCCTH-------H------HHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHH-------H------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHH
Confidence 88777654443221100 1 22222223334688888887766321100 000112334556666
Q ss_pred HhCCHHHHHHHHHHcC-----C-------HHHHHHHHHHcCCHHHHHHHHHH
Q 000162 1065 EAGNFMDAANIARLTG-----D-------ILLTADLLQKAGNFKEACNLTLN 1104 (1987)
Q Consensus 1065 kaG~f~EA~~iAkq~G-----d-------~l~Aae~L~kAg~fdeA~rL~l~ 1104 (1987)
..|++++|..++.+.- . +...+.++.+.|++++|..++..
T Consensus 215 ~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777777766665431 1 22235566667888888766433
No 124
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.02 E-value=0.054 Score=58.71 Aligned_cols=109 Identities=10% Similarity=0.027 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
....|...|..++..|+|++|+.+|.+|=...-.. ..+ .+.. ..+.. ...|...+..+.+.|++++|+.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~-~~~-----~a~~---~~~~~-a~a~~n~g~al~~Lgr~~eAl~~ 79 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM-PPE-----EAFD---HAGFD-AFCHAGLAEALAGLRSFDEALHS 79 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CTT-----SCCC---HHHHH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-cch-----hhhh---hccch-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 34678999999999999999999999863311000 000 0000 00111 12677888899999999999999
Q ss_pred HHHhCCHHHHHHHHHHhcC-----hhHH----HHHHHHHHHcCCHHHHHHHHHh
Q 000162 921 FYDLGEYERAGKIYEERCG-----KPEL----EKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~-----~~ll----~~aAe~fE~agqy~kAAeLYeK 965 (1987)
| ++|+++|..... ...+ ...|..+...|+|++|.+.|.+
T Consensus 80 ~------~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 80 A------DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp H------HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H------HHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 8 777877543221 1234 5666677777777766666544
No 125
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.00 E-value=0.039 Score=69.09 Aligned_cols=178 Identities=10% Similarity=-0.038 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcC----CH---HH
Q 000162 900 ILREAANIFEAIGKA-DSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGN----FF---SE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~-dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaG----d~---~k 971 (1987)
.+...|..|...|++ ++|+++| ++|+++.. .....+...|.+|...|+|++|.++|.++= +. ..
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~------~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 175 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLL------SKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQN 175 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHH------HHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 466777788888888 9999888 56666521 123568889999999999999999999972 11 22
Q ss_pred HHHHHHhc---------CChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhc--------CCHHHHH
Q 000162 972 CLAVCSRG---------ELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQL--------NDKKSMM 1034 (1987)
Q Consensus 972 AIemy~ka---------k~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylkl--------gD~~~Am 1034 (1987)
...+|... ++|++|++..++..+....+.. .+...+..|... |+++.|+
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR--------------SWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHHHHhhccccchHHHHH
Confidence 23355666 7888888877654443222100 111224445555 6788887
Q ss_pred HHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHHc----CCHH----HHHHHHHHcCCHHHHHHH
Q 000162 1035 KFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARLT----GDIL----LTADLLQKAGNFKEACNL 1101 (1987)
Q Consensus 1035 ~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq~----Gd~l----~Aae~L~kAg~fdeA~rL 1101 (1987)
..+...-..+-. --.....+-....++...|++++|...+.+. ++.. ..+..+...|++++|...
T Consensus 242 ~~~~~al~~~p~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 242 SAYAQAEKVDRK--ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHCGG--GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766642211100 0000111233556777888888888777664 2222 224455555777777664
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.86 E-value=0.14 Score=59.21 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
.+...+..++..++|+.|..+|.++-.
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 344567888999999999999998654
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.84 E-value=0.31 Score=53.81 Aligned_cols=124 Identities=10% Similarity=0.023 Sum_probs=79.7
Q ss_pred hcCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHH-
Q 000162 838 VASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADS- 916 (1987)
Q Consensus 838 ~~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dk- 916 (1987)
...++.-+..+|..+...++++.|..+|.++-+..........+..-.. .-...+...+...|.+|++ .|...-
T Consensus 14 ~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a~ 88 (212)
T 3rjv_A 14 EAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSGE 88 (212)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHHH
Confidence 3568899999999999999999999999998653222111111111000 0111245555555666543 343321
Q ss_pred --HHHHHHH----hCCHHHHHHHHHHhcC-------hhHHHHHHHHHHH----cCCHHHHHHHHHhc
Q 000162 917 --AAKCFYD----LGEYERAGKIYEERCG-------KPELEKAGECFFL----AGQYKHAAEVYARG 966 (1987)
Q Consensus 917 --AAk~y~k----aGdyekA~eLy~e~~~-------~~ll~~aAe~fE~----agqy~kAAeLYeKa 966 (1987)
-+.+|.. .+++++|++.|++.+. ...+...|.+|.. .+++.+|.+.|.++
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 2456655 6788888888877543 2446778888888 78888888888887
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.84 E-value=0.099 Score=56.45 Aligned_cols=117 Identities=11% Similarity=0.107 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
.+..+|..++..|+|+.|..+|.++-++. ...+...+..|...|++++|+++|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------------------------~~~~~~lg~~~~~~g~~~~A~~~~-- 60 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPH-------------------------SRICFNIGCMYTILKNMTEAEKAF-- 60 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCC-------------------------HHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCC-------------------------hHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 45678999999999999999999884321 113445566677777777777777
Q ss_pred hCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC------------------------HHHHHHHHHhc
Q 000162 924 LGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF------------------------FSECLAVCSRG 979 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd------------------------~~kAIemy~ka 979 (1987)
++|+++.. .....+...|.++...|+|++|.+.|.++-. +-....+|.+.
T Consensus 61 ----~~al~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 61 ----TRSINRDK--HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp ----HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred ----HHHHHhCc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 44554421 1134466777777777777777777776521 12233355666
Q ss_pred CChHHHHHHHHHhh
Q 000162 980 ELFDIGLQYINYWK 993 (1987)
Q Consensus 980 k~wd~AlrLi~qy~ 993 (1987)
+++++|.+..++..
T Consensus 135 g~~~~A~~~~~~al 148 (213)
T 1hh8_A 135 EEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 67777766665433
No 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.84 E-value=0.054 Score=56.78 Aligned_cols=96 Identities=24% Similarity=0.279 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
++..|..+|..++..|+|+.|+.+|.++=...- .+ ...+...+..|...|++++|+++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------------------~~----~~~~~~l~~~~~~~g~~~~A~~~ 67 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP------------------AN----PIYLSNRAAAYSASGQHEKAAED 67 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------TC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------cC----HHHHHHHHHHHHHccCHHHHHHH
Confidence 456789999999999999999999997633110 00 12356677888889999999998
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|+++... ....+...|.++...|+|++|.+.|.++
T Consensus 68 ~------~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 68 A------ELATVVDPK--YSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp H------HHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8 667766321 2355778888888888888888887765
No 130
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.75 E-value=0.064 Score=56.05 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhh--hhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASD--HIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~--~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
....|+..|..++..|+|+.|+.+|.++=...- ......... .....++ .....+...|..|.+.|++++|+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLD-----TLILREKPGEPEWVELDR-KNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHHHTSCTTSHHHHHHHH-THHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHH
Confidence 346789999999999999999999998644210 000000000 0000001 11234566677777788888888
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.++ ++|+++-. .....+...|.++...|+|++|.+.|.++
T Consensus 84 ~~~------~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 84 ETS------SEVLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHH------HHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH------HHHHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 877 56666511 11345778888888888888888887765
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.73 E-value=0.066 Score=56.03 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
++..|..+|..++..|+|+.|..+|.++-... |.. ...+...+..|...|++++|+++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------------p~~-~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---------------------HYD-SRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------------------ccc-HHHHHHHHHHHHHHhhHHHHHHH
Confidence 34568899999999999999999998653210 100 12345667888899999999999
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|+++.. .....+...|.++...|++++|.+.|.++
T Consensus 78 ~------~~al~l~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 78 Y------SYGAVMDI--XEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp H------HHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHhcCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9 66776622 12355777888888888888888877654
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.71 E-value=0.069 Score=54.81 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
++.|..+|..++..|+|+.|..+|.++-... |.. ...+...+..|...|++++|+++|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------------p~~-~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD---------------------HYD-ARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC---------------------Ccc-HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4567889999999999999999998643210 100 123456778888999999999999
Q ss_pred HHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 922 YDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|+++... ....+...|.++...|++++|.+.|.++
T Consensus 76 ------~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 76 ------SYGALMDIN--EPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp ------HHHHHHCTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HHHHhcCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677766221 2345667788888888888887776554
No 133
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.71 E-value=0.096 Score=50.98 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
+..|..+|..++..|+|+.|..+|.++-...- .+ ...+...+.+|...|++++|+.+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------~~----~~~~~~la~~~~~~~~~~~A~~~~ 61 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP------------------TN----MTYITNQAAVYFEKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------------------cc----HHHHHHHHHHHHHhccHHHHHHHH
Confidence 56789999999999999999999997643210 00 123556677888889999999888
Q ss_pred HHhCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 922 YDLGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|+++...... ...+...|.++...|++++|.+.|.++
T Consensus 62 ------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 62 ------EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp ------HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 566666543111 223455666666666666666655443
No 134
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.69 E-value=0.064 Score=53.60 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=69.4
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
..++..|..+|..++..|+|+.|..+|.++=...- .+ ...+...+..|...|++++|+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~------------------~~----~~~~~~l~~~~~~~~~~~~A~ 63 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP------------------LV----AVYYTNRALCYLKMQQPEQAL 63 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc------------------Cc----HHHHHHHHHHHHHhcCHHHHH
Confidence 45788999999999999999999999997533110 00 124566788888889999998
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++| ++|+++... ....+...|.++...|++++|.+.|.++
T Consensus 64 ~~~------~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 64 ADC------RRALELDGQ--SVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHH------HHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH------HHHHHhCch--hHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888 566665221 1345667777777777777777766554
No 135
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.65 E-value=0.1 Score=50.56 Aligned_cols=116 Identities=16% Similarity=0.261 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
.|..+|..+...|+++.|...|.++-...- .+ ...+...+..|...|++++|.++|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~----~~~~~~~a~~~~~~~~~~~A~~~~-- 58 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP------------------RS----AEAWYNLGNAYYKQGDYDEAIEYY-- 58 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHHTCHHHHHHHH--
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC------------------cc----hhHHHHHHHHHHHhcCHHHHHHHH--
Confidence 477788888888899998888886532100 00 112334455566666666666666
Q ss_pred hCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcC-----CH---HHHHHHHHhcCChHHHHHHH
Q 000162 924 LGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGN-----FF---SECLAVCSRGELFDIGLQYI 989 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaG-----d~---~kAIemy~kak~wd~AlrLi 989 (1987)
+++.++.. .....+...|..+...|++++|.++|.++- +. .....++.+.+++++|.+..
T Consensus 59 ----~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 59 ----QKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ----HHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ----HHHHHHCC--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 33333311 112345566777777777777777666541 11 12233445555555555544
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.64 E-value=0.043 Score=53.97 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
..++..|..+|..++..++|+.|..+|.++-...-. + ...+...+.+|...|++++|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------------~----~~~~~~la~~~~~~~~~~~A~ 70 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------------------D----AKLYSNRAACYTKLLEFQLAL 70 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------------------C----HHHHHHHHHHHTTTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------------c----HHHHHHHHHHHHHhccHHHHH
Confidence 346778999999999999999999999976432100 0 123556677788888999998
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
++| ++|+++... ....+...|.++...|++++|.++|.+
T Consensus 71 ~~~------~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 71 KDC------EECIQLEPT--FIKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHH------HHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH------HHHHHhCCC--chHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888 555555211 134455666666666666666666554
No 137
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.60 E-value=0.13 Score=51.45 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
..+...|..+|..++..|+|+.|..+|.++-...-. .......+...+..|...|++++|+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~~~~~~~~~~~a~~~~~~~~~~~A~ 85 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-------------------PQDQAVLHRNRAACHLKLEDYDKAE 85 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-------------------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-------------------chHHHHHHHHHHHHHHHHccHHHHH
Confidence 346778999999999999999999999976442110 0011234556777888888999998
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++| ++++++.. .....+...|.++...|++++|.++|.++
T Consensus 86 ~~~------~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 86 TEA------SKAIEKDG--GDVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHH------HHHHHHTS--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH------HHHHhhCc--cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888 55555521 12345667778888888887777776654
No 138
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.36 E-value=0.082 Score=50.43 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
.+..|..+|..++..|+|+.|..+|.++-...- .+ ...+...+..|...|++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~----~~~~~~~a~~~~~~~~~~~A~~~ 60 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP------------------HN----HVLYSNRSAAYAKKGDYQKAYED 60 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC------------------Cc----HHHHHHHHHHHHhhccHHHHHHH
Confidence 356789999999999999999999997643110 00 11345566677778888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+ ++++++.. .....+...|.++...|++++|.+.|.++
T Consensus 61 ~------~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 61 G------CKTVDLKP--DWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp H------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7 55555421 12344667777777777777777776654
No 139
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.23 E-value=0.21 Score=61.03 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 000162 845 WKSRGIKLFYENNYEMATICFEK 867 (1987)
Q Consensus 845 WkklA~~l~~~g~ye~A~k~F~r 867 (1987)
|..+|..+...|+++.|+.+|.+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~ 122 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRD 122 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHH
Confidence 44445555555555555555543
No 140
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.21 E-value=0.061 Score=56.24 Aligned_cols=89 Identities=15% Similarity=0.027 Sum_probs=62.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCH
Q 000162 848 RGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEY 927 (1987)
Q Consensus 848 lA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdy 927 (1987)
+|.....+++++.|+..|.++-...- .. ...+...|.+|.+.|++++|+++|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p---------------------~~-~~~~~~la~~y~~~~~~~~A~~~~------ 54 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR---------------------QK-SIKGFYFAKLYYEAKEYDLAKKYI------ 54 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH---------------------HH-HTTHHHHHHHHHHTTCHHHHHHHH------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc---------------------cc-HHHHHHHHHHHHHcCCHHHHHHHH------
Confidence 46666677888888888887655211 11 112345678888999999999998
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 928 ERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 928 ekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|+++-. .....+...|.++...|++++|.+.|.++
T Consensus 55 ~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 55 CTYINVQE--RDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCC--CCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 67776621 12456888999999999999999999887
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.05 E-value=0.089 Score=62.78 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
.+..|..+|..++..|+|+.|+.+|.+|=...-.... .... .+... .......+...|..|.+.|++++|+++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~~~~--~~~~~----~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-FSNE--EAQKA----QALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-CCSH--HHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-CChH--HHHHH----HHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3457899999999999999999999986431100000 0000 00000 011134567778888888999999888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|+++... ....+...|.++...|+|++|.+.|.++
T Consensus 219 ~------~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 219 C------NKALELDSN--NEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp H------HHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8 666666221 2355778899999999999999888776
No 142
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.01 E-value=1.1 Score=49.38 Aligned_cols=59 Identities=12% Similarity=-0.079 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC-hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 902 REAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG-KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 902 ~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~-~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
...|..|.+.|++++|+++| +++++.+..... ...+...|.++...|+|++|.+.|.++
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~------~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQL------EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHH------HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH------HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455566677788888877 445544322000 235677899999999999999998885
No 143
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.88 E-value=0.13 Score=57.97 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
+.-|..+|..++..|+|+.|...|.++=.
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 78899999999999999999999997643
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.79 E-value=0.13 Score=64.09 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
....|+.+|..+++.++|+.|+.+|.+|=...-...........+. .......|...|..|.+.|++++|+++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~-------~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS-------ESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHH-------HHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3457899999999999999999999987431100000000000000 011234566777888888888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|+++... ....+...|.+|...|+|++|.+.|.++
T Consensus 340 ~------~~al~~~p~--~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 340 C------DKALGLDSA--NEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp H------HHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHhcCCc--cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8 666665221 2355778899999999999999988886
No 145
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=94.76 E-value=0.18 Score=64.10 Aligned_cols=97 Identities=12% Similarity=0.014 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
..+..|..+|..+...|+|++|..+|.++-...- .+ ...+...|..|...|++++|++
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------~~----~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP------------------GH----PEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST------------------TC----HHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------CC----HHHHHHHHHHHHHCCCHHHHHH
Confidence 4677899999999999999999999997644211 00 1235567778888899999988
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+| ++|+++.. .....+...|.++...|++++|.+.|.++
T Consensus 79 ~~------~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 79 LL------QQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp HH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH------HHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88 66666521 12356778899999999999999988886
No 146
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.73 E-value=0.15 Score=55.11 Aligned_cols=100 Identities=15% Similarity=0.015 Sum_probs=74.8
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
..++..|..+|..+...|+|+.|..+|.++-...- .. ...+...|.+|...|++++|+
T Consensus 34 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------~~----~~~~~~lg~~~~~~~~~~~A~ 91 (213)
T 1hh8_A 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------------------HL----AVAYFQRGMLYYQTEKYDLAI 91 (213)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHH
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------------cc----hHHHHHHHHHHHHcccHHHHH
Confidence 34788999999999999999999999997533110 00 123567788888999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhc--------------ChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 919 KCFYDLGEYERAGKIYEERC--------------GKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~--------------~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++| ++|+++..... ....+...|.++...|++++|.+.|.++
T Consensus 92 ~~~------~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 92 KDL------KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHH------HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH------HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 988 55665432210 0145778999999999999999999886
No 147
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=94.73 E-value=0.0082 Score=83.66 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=47.3
Q ss_pred CCceeeeeecccCCCCCeEEEeecCCCC-CcchhhHH-----HHHHHHHhhhccCCCCCCCCChhhhhhhcccccccCcE
Q 000162 717 KQALVLTIVESKGLEFQDVLLYDFFGSS-PLKNQWRV-----VYEYMKEQALLDSTLPASFPSFNEAKHNVLCPELKQLY 790 (1987)
Q Consensus 717 ~~a~VlTIhkSKGLEFD~VIL~dFfsds-pv~~~~~~-----l~~~~k~q~~~~~~~~s~~p~~d~~~~~~L~~ELnLLY 790 (1987)
+...|+|+|.+||+|||+|+++++.++. |-...-.. .-..+...++.- . |. ....+..|+.++|
T Consensus 586 d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l-~-----~~----~~~~~~eer~l~y 655 (1166)
T 3u4q_B 586 DQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVEL-S-----SG----GRERLLDEHFLIY 655 (1166)
T ss_dssp SCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCC-C-----CC----SSHHHHHHHHHHH
T ss_pred CEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcC-C-----Cc----hHHHHHHhHHHHH
Confidence 3567999999999999999999988764 22111000 000111111100 0 00 1123446778899
Q ss_pred Eecccccccchhc
Q 000162 791 VAITRTRQRLWIW 803 (1987)
Q Consensus 791 VAITRAKk~LvIv 803 (1987)
||+|||+++|+|.
T Consensus 656 ~altrA~~~L~ls 668 (1166)
T 3u4q_B 656 MAFSSPSDRLYVS 668 (1166)
T ss_dssp HHHTSCSSEEEEE
T ss_pred HHHhcccCeEEEE
Confidence 9999999999986
No 148
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.69 E-value=0.48 Score=59.47 Aligned_cols=191 Identities=11% Similarity=0.089 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHHHHH-------hcCHH-------HHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHH
Q 000162 839 ASSPEEWKSRGIKLFY-------ENNYE-------MATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREA 904 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~-------~g~ye-------~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eA 904 (1987)
..+++.|..+|..+.. .|+++ .|..+|.+|=... .|. ....+...
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--------------------~p~-~~~l~~~~ 327 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------------------LKK-NMLLYFAY 327 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--------------------CSS-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--------------------Ccc-cHHHHHHH
Confidence 4689999999999987 68887 7888888763210 000 01234456
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh-hHHHHHHHHHHHcCCHHHHHHHHHhcCC-----HH---H-HHH
Q 000162 905 ANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGK-PELEKAGECFFLAGQYKHAAEVYARGNF-----FS---E-CLA 974 (1987)
Q Consensus 905 AelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~-~ll~~aAe~fE~agqy~kAAeLYeKaGd-----~~---k-AIe 974 (1987)
+.++++.|++++|.++| ++|+++-. ... ..+...|..+...|++++|.++|.++-. +. . |.-
T Consensus 328 ~~~~~~~g~~~~A~~~~------~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIY------NRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHTTCHHHHHHHH------HHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH------HHHhCccc--cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 67777778888888887 44554310 011 2566777777778888888888887621 11 1 111
Q ss_pred HHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcc-----HHHHHHH
Q 000162 975 VCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVKAFHS-----MDLMRNF 1049 (1987)
Q Consensus 975 my~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk~~~s-----~d~aa~f 1049 (1987)
.+...|++++|..+.++-.+....+ ..+...-+..+.+.|+++.|...+...-. .+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~--------------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~---- 461 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDI--------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK---- 461 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG----
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCC--------------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH----
Confidence 1224566666666654322211110 01222334456667777777766553211 000
Q ss_pred HhhcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 000162 1050 LKSKSCFDELLVLEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1050 L~k~~~~dEaiell~kaG~f~EA~~iAkq 1078 (1987)
....+...++++...|+.+.|..+..+
T Consensus 462 --~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 462 --SGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp --CHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 011233445556666666666554443
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.68 E-value=0.2 Score=48.56 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
.+..|..+|..++..++|+.|..+|.++-...- .+ ...+...+..|...|++++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~----~~~~~~~a~~~~~~~~~~~A~~~ 68 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP------------------AN----AVYFCNRAAAYSKLGNYAGAVQD 68 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------------------CC----HHHHHHHHHHHHHhhchHHHHHH
Confidence 456788999999999999999999997643100 00 12355667778888888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++++++.. .....+...|..+...|++++|.+.|.++
T Consensus 69 ~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 69 C------ERAICIDP--AYSKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp H------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHhcCc--cCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8 45554421 11234556666666666666666655543
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.68 E-value=0.34 Score=55.81 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 000162 846 KSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLG 925 (1987)
Q Consensus 846 kklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaG 925 (1987)
...|......|+|+.|..+|.++=..... ..++......+...|.+|...|++++|.++|
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~---- 178 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLT----------------GIDVYQNLYIENAIANIYAENGYLKKGIDLF---- 178 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCC----------------SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhc----------------CCchHHHHHHHHHHHHHHHHcCCHHHHHHHH----
Confidence 45677778889999999999876432110 0011112335667888899999999999999
Q ss_pred CHHHHHHHHHHhcCh-----hHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 926 EYERAGKIYEERCGK-----PELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 926 dyekA~eLy~e~~~~-----~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|.+++....+. ..+...|.+|...|+|++|.++|.++
T Consensus 179 --~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 179 --EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp --HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 6777766653331 35678888888899999998888765
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.61 E-value=0.13 Score=51.82 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
..|..+|..++..|+++.|..+|.++=.. +|.. ...+...+.+|...|++++|+.+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~P~~-~~a~~~lg~~~~~~g~~~~A~~~~- 74 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK---------------------EPER-EEAWRSLGLTQAENEKDGLAIIAL- 74 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STTC-HHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHH-
Confidence 35788999999999999999999965321 0111 123556778888999999999998
Q ss_pred HhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 923 DLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|+++-.. ....+...|.++...|++++|.+.|.++
T Consensus 75 -----~~al~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 75 -----NHARMLDPK--DIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp -----HHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677776211 1345677888888888888888887765
No 152
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.59 E-value=0.018 Score=62.42 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...++|+|+|||||||++ +...+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999998 44443
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.57 E-value=0.13 Score=50.68 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 843 EEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFY 922 (1987)
Q Consensus 843 eeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~ 922 (1987)
+.+..+|..++..|+|+.|..+|.++-...- .++. ....+...+..|...|++++|+++|
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------------------~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~- 62 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYP------------------NGVY-TPNALYWLGESYYATRNFQLAEAQF- 62 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------------------SSTT-HHHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC------------------CCcc-cHHHHHHHHHHHHHhccHHHHHHHH-
Confidence 3467889999999999999999986432100 0110 1123456677888888898888888
Q ss_pred HhCCHHHHHHHHHHhcC-hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 923 DLGEYERAGKIYEERCG-KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 923 kaGdyekA~eLy~e~~~-~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+++++++..... ...+...|.++...|++++|.+.|.++
T Consensus 63 -----~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 63 -----RDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp -----HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555554322000 233556677777777777776666543
No 154
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.52 E-value=0.089 Score=54.97 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
+..|..+|..++..|+|+.|..+|.++=... |.. ...+...|.+|...|++++|+.+|
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---------------------p~~-~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---------------------ERD-PKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCC-HHHHHHHHHHHHHcCchHHHHHHH
Confidence 3456889999999999999999999753210 100 124667788899999999999998
Q ss_pred HHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHH
Q 000162 922 YDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVY 963 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLY 963 (1987)
++|+++-. .....+...|..+.+.|++.+|++.|
T Consensus 89 ------~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~ 122 (150)
T 4ga2_A 89 ------RRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYW 122 (150)
T ss_dssp ------HHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred ------HHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 67777621 12355778888888888888877765
No 155
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.51 E-value=0.7 Score=44.52 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HHHH
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF---FSEC 972 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~kA 972 (1987)
+...+..|...|++++|.++|. ++.++.. .....+...|..+...|++++|.++|.++ +. +...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~------~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQ------KALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH------HHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHH------HHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 3445666666777777777763 3333211 11344667888888999999999988876 11 1233
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000162 973 LAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKFVK 1038 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~vk 1038 (1987)
..++...+++++|.++.++..+..... . ......+..|...|+++.|...+.
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~-------~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALELDPRS-------A-------EAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTC-------H-------HHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCC-------h-------HHHHHHHHHHHHHccHHHHHHHHH
Confidence 456777888888888775543321111 0 011123455666777776665444
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=94.50 E-value=0.21 Score=47.97 Aligned_cols=95 Identities=21% Similarity=0.359 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
....|..+|..+...++++.|..+|.++-...- .+ ...+...+..|...|++++|+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~----~~~~~~la~~~~~~~~~~~A~~~ 65 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------------------NN----AEAWYNLGNAYYKQGDYDEAIEY 65 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------------------Cc----HHHHHHHHHHHHHhCCHHHHHHH
Confidence 357789999999999999999999997632100 00 11344567777888888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
| +++.++.. .....+...|..+...|++++|.+.|.+
T Consensus 66 ~------~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 66 Y------QKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp H------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H------HHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7 44444311 1123455566666666666666665544
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.36 E-value=0.042 Score=52.15 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
.+..|..+|..++..|+|+.|..+|.++-...- .+ ...+...|.+|...|++++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~------------------~~----~~~~~~~a~~~~~~~~~~~A~~~ 62 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP------------------EE----SKYWLMKGKALYNLERYEEAVDC 62 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC------------------CC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc------------------CC----HHHHHHHHHHHHHccCHHHHHHH
Confidence 345678889999999999999999987643110 00 11345667778888888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHc-CCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLA-GQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~a-gqy~kAAeLYeKa 966 (1987)
| ++|+++.........+...|.++... |++++|.+.|.++
T Consensus 63 ~------~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 63 Y------NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp H------HHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred H------HHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8 45554421100123455666666666 6666666666554
No 158
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.35 E-value=0.21 Score=60.79 Aligned_cols=61 Identities=10% Similarity=0.182 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC-------hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG-------KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~-------~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.|...|.+|...|++++|+++| ++|.+++.+..+ -..+...|..|...|+|++|.+.|.++
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~------~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECL------RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4667888999999999999999 778888765322 123678999999999999999988776
No 159
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.31 E-value=0.12 Score=65.45 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=68.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCH
Q 000162 848 RGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEY 927 (1987)
Q Consensus 848 lA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdy 927 (1987)
.+..+-.+|+|++|..+|+++=..... .+-...|. ....+...|..|...|++++|..+|
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~-------------~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~------ 374 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEP-------------VFADTNLY-VLRLLSIASEVLSYLQAYEEASHYA------ 374 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTT-------------TBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHH------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHH-------------hcCCCCHH-HHHHHHHHHHHHHHhcCHHHHHHHH------
Confidence 345566789999999999876432111 11112232 2345788999999999999999999
Q ss_pred HHHHHHHHHhcCh------hHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 928 ERAGKIYEERCGK------PELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 928 ekA~eLy~e~~~~------~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|.+++++.-+. ..+...|..|...|+|++|..+|.++
T Consensus 375 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 375 RRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7889998876552 23667777777777777777766553
No 160
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.29 E-value=0.21 Score=60.72 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCF 921 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y 921 (1987)
...|+.+|..++..++|+.|+.+|.+|=...-... .... .... ...++ .....+...|..|.+.|++++|+++|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-~~~~-~~~~---~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-AAAE-DADG---AKLQP-VALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HHSC-HHHH---GGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-cccC-hHHH---HHHHH-HHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 35689999999999999999999998755211100 0000 0000 00111 12344667777788888888888887
Q ss_pred HHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 922 YDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 922 ~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|+++.. .....+...|.++...|+|++|.+.|.++
T Consensus 297 ------~~al~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 297 ------LEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp ------HHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HHHHHhCc--hhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55554421 11344667777888788877777766654
No 161
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.19 E-value=0.33 Score=59.40 Aligned_cols=98 Identities=6% Similarity=-0.036 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHHhcC-HHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENN-YEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSA 917 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~-ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkA 917 (1987)
.....-|..+|..+...|+ |+.|+.+|.++=... |.. ...+...+.+|...|++++|
T Consensus 128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---------------------P~~-~~a~~~~g~~~~~~g~~~eA 185 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---------------------PKN-YQVWHHRRVLVEWLRDPSQE 185 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHHTCCTTH
T ss_pred ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---------------------CCC-HHHHHHHHHHHHHccCHHHH
Confidence 3578899999999999997 999999999753310 110 11344556667777888888
Q ss_pred HHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 918 AKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 918 Ak~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+.+| ++|+++-- .....+...|..+...|+|++|.+.|.++
T Consensus 186 l~~~------~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 186 LEFI------ADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHH------HHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHH------HHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8887 66666521 11345777888888888888888888776
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.13 E-value=0.34 Score=52.30 Aligned_cols=110 Identities=16% Similarity=0.085 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhh-hHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATG-LKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~-l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
...|..+|..++..|+|+.|..+|.++-...-........ ..... .......+...|..|...|++++|+++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK-------KNIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH-------HHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4568899999999999999999999874311000000000 00000 011123466777788888888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|+++.. .....+...|.++...|+|++|.+.|.++
T Consensus 111 ~------~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 111 A------SKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp H------HHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred H------HHHHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 8 55665521 11345667777778788877777776654
No 163
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=94.00 E-value=0.55 Score=54.08 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=67.9
Q ss_pred HHH-HHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 845 WKS-RGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 845 Wkk-lA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
|.. +|......++|+.|..+|.+|=+.... ..+.......+...|..|...|++++|.++|
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~----------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~-- 178 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLT----------------GIDVYQNLYIENAIANIYAENGYLKKGIDLF-- 178 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC----------------CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcc----------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 443 788888888999999999976431100 0111112234667788888889999998888
Q ss_pred hCCHHHHHHHHHHhcC-----hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 924 LGEYERAGKIYEERCG-----KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~-----~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|.+++.+... ...+...|.+|.+.|+|++|.++|.++
T Consensus 179 ----~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 179 ----EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp ----HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 666766665312 124677888888888888888877654
No 164
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.98 E-value=0.14 Score=63.85 Aligned_cols=93 Identities=11% Similarity=0.005 Sum_probs=64.5
Q ss_pred HhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHH
Q 000162 854 YENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKI 933 (1987)
Q Consensus 854 ~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eL 933 (1987)
..|+|++|...|+++=..... .+-..+|.. ..-+..+|..|...|++++|+.+| ++|.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~-------------~lg~~Hp~~-a~~~~nLa~~y~~~g~~~eA~~~~------~~aL~i 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSS-------------VFEDSNVYM-LHMMYQAMGVCLYMQDWEGALKYG------QKIIKP 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTT-------------TBCTTSHHH-HHHHHHHHHHHHHTTCHHHHHHHH------HHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhC-------------ccChhchHH-HHHHHHHHHHHHhhcCHHHHHHHH------HHHHHH
Confidence 458999999999876442111 111122322 345778999999999999999999 888999
Q ss_pred HHHhcCh------hHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 934 YEERCGK------PELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 934 y~e~~~~------~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+++.-+. ..+...|..|...|+|++|..+|.++
T Consensus 370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8876552 23667777777777777777766543
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.88 E-value=0.55 Score=47.89 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---H
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---S 970 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~ 970 (1987)
..+...|..|...|++++|+++| ++|+++... ....+...|.++...|+|++|.+.|.++ .+. -
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~------~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 85 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFY------SQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------HHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHH------HHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34667777788888888888888 555554211 2355778899999999999999998886 221 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhh
Q 000162 971 ECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 971 kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
....++...+++++|.+..++..+
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 233466777888888877765443
No 166
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.82 E-value=0.35 Score=63.41 Aligned_cols=92 Identities=9% Similarity=0.001 Sum_probs=61.0
Q ss_pred HHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHH
Q 000162 853 FYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGK 932 (1987)
Q Consensus 853 ~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~e 932 (1987)
+..+++++|..+|.++-+..+. .... .+|.. ...+...|..|.+.|++++|+++| ++|++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~----------~~~~---~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~------~~al~ 461 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALD----------ADGV---DFSES-VELPLMEVRALLDLGDVAKATRKL------DDLAE 461 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC--------------------CCTTC-SHHHHHHHHHHHHHTCHHHHHHHH------HHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccc----------cccc---ccccc-hhHHHHHHHHHHhcCCHHHHHHHH------HHHhc
Confidence 7789999999999987421110 0000 01111 123556677888889999999888 66666
Q ss_pred HHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 933 IYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 933 Ly~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+.- .....+...|..+...|+|++|.+.|.++
T Consensus 462 ~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 493 (681)
T 2pzi_A 462 RVG--WRWRLVWYRAVAELLTGDYDSATKHFTEV 493 (681)
T ss_dssp HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 521 12356778888899999999999988876
No 167
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.75 E-value=4.9e-05 Score=93.72 Aligned_cols=224 Identities=14% Similarity=0.168 Sum_probs=145.2
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccch-hHHHHHhh-----------hHHh-----------------h--h
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYW-EGRSKATG-----------LKAA-----------------S--D 887 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~l-a~la~A~~-----------l~~a-----------------A--~ 887 (1987)
-..|+.|.++|...+..+...+|+.+|+||+|+.. ..+..++. +..+ | +
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 56899999999999999999999999999999532 22222221 0000 0 0
Q ss_pred h-------hhc---CChHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHH
Q 000162 888 H-------IRS---SNPLE------ANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFF 951 (1987)
Q Consensus 888 ~-------l~s---~~~~e------a~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE 951 (1987)
. +.. .+.+. ..+.|+.|--+|..+.++.+-+.|+.++|+|+.|++.+++......+++.-....
T Consensus 131 rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 131 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp SSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred cHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 0 000 11111 1122555556666778888889999999999999998887666677999988999
Q ss_pred HcCCHHHHHH----HHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 000162 952 LAGQYKHAAE----VYARGNFFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQL 1027 (1987)
Q Consensus 952 ~agqy~kAAe----LYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylkl 1027 (1987)
+.++|..|-- +-..+...++.+..|...|.|++++.+++.=.....+.-|+ |-+. +..|.++
T Consensus 211 d~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGm-------------FTEL-aILYsKY 276 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM-------------FTEL-AILYSKF 276 (624)
T ss_dssp HSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH-------------HHHH-HHHHHSS
T ss_pred CchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH-------------HHHH-HHHHHhc
Confidence 9999988765 45556888889999999999998888886543332222222 2233 5667776
Q ss_pred CCHHHHHHHHHHhccHH---HHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHH
Q 000162 1028 NDKKSMMKFVKAFHSMD---LMRNFLKSKSCFDELLVLEEEAGNFMDAANIAR 1077 (1987)
Q Consensus 1028 gD~~~Am~~vk~~~s~d---~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAk 1077 (1987)
.++++|+.++.|-+-= ...+.+++...+.|++=+|..-..|+-|+....
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi 328 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 328 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTT
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHH
Confidence 5788888877654311 123334444555555555555555555544333
No 168
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.69 E-value=0.51 Score=47.86 Aligned_cols=94 Identities=14% Similarity=0.031 Sum_probs=68.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc----C
Q 000162 892 SNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----N 967 (1987)
Q Consensus 892 ~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----G 967 (1987)
.+|..+. .+..-|..|.+.|++++|+++| ++|+++-. .....+...|.++...|+|++|.+.|.++ .
T Consensus 8 inP~~a~-~~~~~G~~~~~~g~~~~A~~~~------~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 8 INPELAQ-EEKNKGNEYFKKGDYPTAMRHY------NEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp CCHHHHH-HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HCHHHHH-HHHHHHHHHHHcCCHHHHHHHH------HHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 3565544 3556778888999999999999 67776621 12456888999999999999999999987 2
Q ss_pred CHH----HHHHHHHhcCChHHHHHHHHHhhh
Q 000162 968 FFS----ECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 968 d~~----kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
+.. ....+|...++|++|++..++..+
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222 233467788888888888765444
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.50 E-value=1.1 Score=53.63 Aligned_cols=26 Identities=4% Similarity=-0.096 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 845 WKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 845 WkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
...+|..+...|+|+.|..+|.++-.
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56789999999999999999998644
No 170
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.48 E-value=0.26 Score=61.28 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=63.3
Q ss_pred HHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHH
Q 000162 850 IKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYER 929 (1987)
Q Consensus 850 ~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyek 929 (1987)
+.+..+|+|++|...|+++=..... .+-..++. ....+..++..|...|++++|+.+| ++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~-------------~lg~~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~------~~ 354 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSE-------------RLPDINIY-QLKVLDCAMDACINLGLLEEALFYG------TR 354 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSC-------------CCCTTSHH-HHHHHHHHHHHHHHHTCHHHHHHHH------HH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccC-------------cCCccchH-HHHHHHHHHHHHHhhccHHHHHHHH------HH
Confidence 4455678899999888876332111 01112222 2345778899999999999999998 88
Q ss_pred HHHHHHHhcCh------hHHHHHHHHHHHcCCHHHHHHHHHh
Q 000162 930 AGKIYEERCGK------PELEKAGECFFLAGQYKHAAEVYAR 965 (1987)
Q Consensus 930 A~eLy~e~~~~------~ll~~aAe~fE~agqy~kAAeLYeK 965 (1987)
|.++++..-+. ..+...|..|...|+|++|..+|.+
T Consensus 355 ~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 355 TMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 89998875552 2255666666666666666665544
No 171
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.38 E-value=0.031 Score=66.99 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++.++|+|.||||||+++ +++-+
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 778999999999999998 44433
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.30 E-value=0.25 Score=57.13 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
....|+.+|..++..|+|+.|..+|.++=...- .+ ...+...|..|.+.|++++|+++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------------------~~----~~~~~~la~~~~~~~~~~~A~~~ 60 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP------------------LV----AVYYTNRALCYLKMQQPEQALAD 60 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------------------CC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------cc----HHHHHHHHHHHHHhcCHHHHHHH
Confidence 567899999999999999999999996533100 00 12355667778888888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
| ++|+++.. .....+...|..+...|+|++|.+.|.++
T Consensus 61 ~------~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 61 C------RRALELDG--QSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp H------HHHTTSCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H------HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7 34443311 11244667788888888888888777654
No 173
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.23 E-value=0.042 Score=60.62 Aligned_cols=30 Identities=33% Similarity=0.555 Sum_probs=17.3
Q ss_pred ccCHHHHHhhccCCcEEEEcCCCCChhHHH
Q 000162 513 EVTDEQLEMILFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 513 ~l~~eQk~AI~~~~~~iItGgPGTGKTTVI 542 (1987)
+|.+.+...-.....++|+|+||+||||++
T Consensus 6 ~~~~~~~~m~~~~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 6 EYKSEAAAVRRFPGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp ---------CCCSSCEEEECSTTSCHHHHH
T ss_pred eecCcccccCCCCeEEEEECCCCCCHHHHH
Confidence 455444422222568999999999999997
No 174
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.21 E-value=0.038 Score=58.65 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999997
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=92.98 E-value=0.7 Score=55.01 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC-------------hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG-------------KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~-------------~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.+...+..|.+.|++++|+++| ++|+++...... ...+...|.++...|+|++|.+.|.++
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y------~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQY------KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH------HHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH------HHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556777788889999999988 566666433100 256788999999999999999999987
Q ss_pred -----CCH---HHHHHHHHhcCChHHHHHHHHHhhhc
Q 000162 967 -----NFF---SECLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 967 -----Gd~---~kAIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
.+. -....+|...+++++|....++..+.
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 221 23344778888999998888665443
No 176
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.98 E-value=0.34 Score=63.50 Aligned_cols=123 Identities=14% Similarity=-0.063 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
..+++.|..+|..+...|+|+.|..+|.++-...- .+ ...+...|..|...|++++|+
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------------------~~----~~a~~~lg~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG------------------WR----WRLVWYRAVAELLTGDYDSAT 487 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------------------CC----HHHHHHHHHHHHHHTCHHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc------------------ch----HHHHHHHHHHHHHcCCHHHHH
Confidence 34667899999999999999999999997533100 00 112445556666677777777
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHHHHHHHhcCChHHHHHHHH
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SECLAVCSRGELFDIGLQYIN 990 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kAIemy~kak~wd~AlrLi~ 990 (1987)
++| ++|+++--+ ....+...|.++.+.|+|++ .+.|.++ ++. -....+|.+.+++++|++..+
T Consensus 488 ~~~------~~al~l~P~--~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 488 KHF------TEVLDTFPG--ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHH------HHHHHHSTT--CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH------HHHHHhCCC--ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777 555555211 12445667777777777777 6666665 111 222335566677777766664
Q ss_pred Hh
Q 000162 991 YW 992 (1987)
Q Consensus 991 qy 992 (1987)
+.
T Consensus 559 ~a 560 (681)
T 2pzi_A 559 EV 560 (681)
T ss_dssp TS
T ss_pred hh
Confidence 43
No 177
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=92.95 E-value=0.93 Score=48.00 Aligned_cols=94 Identities=14% Similarity=-0.009 Sum_probs=68.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----
Q 000162 892 SNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----- 966 (1987)
Q Consensus 892 ~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----- 966 (1987)
.+|.... .+...|..|.+.|++++|+++| ++|+++-. .....+...|.++...|+|++|.+.|.++
T Consensus 31 l~p~~~~-~~~~lg~~~~~~g~~~eA~~~~------~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 31 IPDDMMD-DIYSYAYDFYNKGRIEEAEVFF------RFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp SCHHHHH-HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCHHHHH-HHHHHHHHHHHcCCHHHHHHHH------HHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 3454443 3556667788899999999999 66776621 12456888999999999999999999998
Q ss_pred CCH---HHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 967 NFF---SECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 967 Gd~---~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
++. -....+|.+.+++++|.+..++..+
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 2334477888899988888765444
No 178
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=92.91 E-value=0.39 Score=50.49 Aligned_cols=98 Identities=14% Similarity=0.260 Sum_probs=65.5
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHH-HHHcCCH--H
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANI-FEAIGKA--D 915 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAel-Ye~~G~~--d 915 (1987)
...+..|..+|..++..|+|+.|..+|.++-...- .++ ..+...+.+ |...|++ +
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------------------~~~----~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG------------------ENA----ELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC------------------SCH----HHHHHHHHHHHHHTTTCCCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------CCH----HHHHHHHHHHHHhcCCcchH
Confidence 34778999999999999999999999997543100 011 123344555 7788887 8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 916 SAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 916 kAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+|+++| ++|+++.. .....+...|.++...|+|++|.+.|.++
T Consensus 99 ~A~~~~------~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 99 QTRAMI------DKALALDS--NEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 888887 55555521 11344566777777777777777766554
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.86 E-value=0.15 Score=61.02 Aligned_cols=113 Identities=18% Similarity=0.065 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHH-HHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 842 PEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRS-KATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 842 peeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la-~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
...|+.+|..++..++|+.|..+|.+|=...-.... ...+....+.. ......+...|..|.+.|++++|+++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~------~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMAL------AVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHH------HHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHH------HHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356899999999999999999999986432110000 00000000000 00112456666777777777777777
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF 968 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd 968 (1987)
| ++|+++.. .....+...|.++...|+|++|.+.|.++-.
T Consensus 253 ~------~~al~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 253 C------NIVLTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp H------HHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred H------HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7 55555421 1235577888888888888888888888744
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.84 E-value=0.063 Score=59.05 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||++
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999997
No 181
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.84 E-value=0.51 Score=45.60 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
..+..|..+|..++..|+|+.|+.+|.++=...- .+ ...+...+..|...|++++|++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------~~----~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP------------------DY----VGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------TC----THHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------Cc----HHHHHHHHHHHHHcCCHHHHHH
Confidence 4678899999999999999999999997633100 01 1135667888999999999999
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHc
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGECFFLA 953 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~a 953 (1987)
+| ++|+++.....+.....+....+...
T Consensus 63 ~~------~~al~l~~~~~~~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 63 TY------AQGIEVAREEGTQKDLSELQDAKLKA 90 (100)
T ss_dssp HH------HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HH------HHHHhhhhcCCchhHHHHHHHHHHHc
Confidence 98 66777765533334444444444433
No 182
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.80 E-value=0.052 Score=57.78 Aligned_cols=18 Identities=33% Similarity=0.724 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 568999999999999997
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.79 E-value=1.1 Score=46.58 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHh----------------cChhHHHHHHHHHHHcCCHHHHHH
Q 000162 898 NVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEER----------------CGKPELEKAGECFFLAGQYKHAAE 961 (1987)
Q Consensus 898 ~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~----------------~~~~ll~~aAe~fE~agqy~kAAe 961 (1987)
...+.+.|..|.+.|++++|+++| .+|++++... .....+...|.++...|+|.+|.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y------~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAY------RDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH------HHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345677788888899999999998 6666664321 112457889999999999999999
Q ss_pred HHHhc-----CCH---HHHHHHHHhcCChHHHHHHHHHhhhc
Q 000162 962 VYARG-----NFF---SECLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 962 LYeKa-----Gd~---~kAIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
.|.++ .+. -....+|...++|++|....++..+.
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99887 221 22334677888999888887654443
No 184
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.77 E-value=0.49 Score=60.06 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHH
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SEC 972 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kA 972 (1987)
+...|..|.+.|++++|+++| ++|+++.. .....+...|.++...|+|++|.+.|.++ ++. ...
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~------~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 97 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAV------QRGLALHP--GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------HHHHTTST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------HHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 445555566666666666666 33333311 11345778899999999999999998887 221 233
Q ss_pred HHHHHhcCChHHHHHHHHHhh
Q 000162 973 LAVCSRGELFDIGLQYINYWK 993 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy~ 993 (1987)
..+|.+.+++++|.+..++..
T Consensus 98 a~~~~~~g~~~~A~~~~~~al 118 (568)
T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAH 118 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 446677777887777765433
No 185
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.76 E-value=2.2 Score=49.34 Aligned_cols=59 Identities=10% Similarity=-0.048 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcC
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGN 967 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaG 967 (1987)
+...|..+.+.|++++|+..| ++|.++..+ ....+...|..+...|++++|.++|.++-
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~------~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLL------XDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------HHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCCHHHHHHHH------HHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 446677777888999998888 556555211 23557788899999999999999998873
No 186
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.69 E-value=0.56 Score=59.48 Aligned_cols=106 Identities=7% Similarity=0.095 Sum_probs=53.4
Q ss_pred HHHHHHHHHhc---C------CHHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 000162 956 YKHAAEVYARG---N------FFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQ 1026 (1987)
Q Consensus 956 y~kAAeLYeKa---G------d~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylk 1026 (1987)
.++|.++|.+. | -|...|.+|.+.+.+++|.++.++-.+.. ..+.. .. +......|.+
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~-~t-------yn~lI~~~~~ 152 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-----IQPRL-RS-------YGPALFGFCR 152 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CCCCH-HH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcc-ce-------ehHHHHHHHH
Confidence 56666666653 1 24666777777777777777775433321 10010 01 1222445566
Q ss_pred cCCHHHHHHHHHHhccHHHHHHHHhhcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 000162 1027 LNDKKSMMKFVKAFHSMDLMRNFLKSKSCFDELLVLEEEAGNFMDAANIARL 1078 (1987)
Q Consensus 1027 lgD~~~Am~~vk~~~s~d~aa~fL~k~~~~dEaiell~kaG~f~EA~~iAkq 1078 (1987)
.|+++.|.+++.......... ...-|..++..+++.|++++|.+++.+
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~P----d~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVP----EEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 677776666544211100000 001145566666777777777666554
No 187
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.60 E-value=0.56 Score=54.36 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKA 868 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rA 868 (1987)
..++.+..+|..+...|+++.|..+|.++
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 143 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDA 143 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34556777788888888888888888765
No 188
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=92.54 E-value=0.53 Score=47.67 Aligned_cols=60 Identities=7% Similarity=0.135 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
..+.+.+..|.+.|++++|+++| ++|+++..+ ....+...|.+|...|+|++|.+.|.++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y------~~Al~~~p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHY------DKAIELDPS--NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------HHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------HHHHHhCCC--CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 34667888899999999999999 677776321 2356788999999999999999988776
No 189
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.52 E-value=0.97 Score=44.64 Aligned_cols=86 Identities=9% Similarity=0.001 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~k 971 (1987)
.+...|..|.+.|++++|+++| ++|+++.. .....+...|.++...|+|++|.+.|.++ .+. -.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~------~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAY------TEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHH------HHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 4556677778888899998888 56666521 12456888999999999999999999887 221 22
Q ss_pred HHHHHHhcCChHHHHHHHHHhh
Q 000162 972 CLAVCSRGELFDIGLQYINYWK 993 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy~ 993 (1987)
...++...+++++|....++..
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHH
Confidence 3346677788888887775433
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.51 E-value=0.07 Score=56.09 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCChhHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI 542 (1987)
...+++|+|.||||||+++
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3678999999999999997
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.44 E-value=0.33 Score=61.50 Aligned_cols=103 Identities=16% Similarity=0.051 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
-...+|..+..+|+|++|..+|+++=.... +.+ -...|.. ...+...|.+|...|++++|..+|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~----~~l---------G~~Hp~~-a~~l~nLa~~~~~~G~~~eA~~~~-- 416 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYM----KLY---------HHNNAQL-GMAVMRAGLTNWHAGHIEVGHGMI-- 416 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHS---------CTTCHHH-HHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHc---------CCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHH--
Confidence 456788899999999999999997644321 111 1123333 335778899999999999999999
Q ss_pred hCCHHHHHHHHHHhcC------hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 924 LGEYERAGKIYEERCG------KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~------~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|.++++...| .......++++.+.+.|+.|..+|.++
T Consensus 417 ----~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 417 ----CKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp ----HHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999888655 234567888888888999999999876
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.42 E-value=6.2 Score=47.11 Aligned_cols=130 Identities=8% Similarity=-0.051 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHh-cccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKA-KDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rA-gd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
.++.....+|..++..|++++|++.+.+. +.... ......+..++.+|.+.|+.+.|.
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---------------------~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA---------------------EGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---------------------TTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---------------------cCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45666788999999999999999999976 21100 011234557888999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhcChhHHHHHHHH--HHHcC--CHHHHHHHHHhc----CC---HHHHHHHHHhcCChHHHHH
Q 000162 919 KCFYDLGEYERAGKIYEERCGKPELEKAGEC--FFLAG--QYKHAAEVYARG----NF---FSECLAVCSRGELFDIGLQ 987 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e~~~~~ll~~aAe~--fE~ag--qy~kAAeLYeKa----Gd---~~kAIemy~kak~wd~Alr 987 (1987)
+.+.++.....-. +. .+...+.+.|+. .-..| ++.+|..+|.+. ++ ..-...++...++|++|.+
T Consensus 157 k~l~~~~~~~~d~-~~---~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 157 TIFDNYTNAIEDT-VS---GDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHHSCHH-HH---HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcCccc-cc---cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHH
Confidence 9985433221100 00 002334444444 22224 899999888886 33 2344557889999999999
Q ss_pred HHHHhhh
Q 000162 988 YINYWKQ 994 (1987)
Q Consensus 988 Li~qy~~ 994 (1987)
+++++.+
T Consensus 233 ~L~~l~~ 239 (310)
T 3mv2_B 233 IVELLLS 239 (310)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 9875443
No 193
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=92.35 E-value=0.62 Score=49.37 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKD 870 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd 870 (1987)
..++.-|..+|..+...|+++.|..+|.++-.
T Consensus 37 P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 37 QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 34778899999999999999999999998743
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.25 E-value=1.2 Score=55.38 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC-------------hhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG-------------KPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~-------------~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.+...+..|.+.|++++|+.+| ++|+++...... ...+...|.++.+.|+|++|.+.|.++
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y------~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQY------GKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH------HHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4666777888899999999999 666666433100 255778999999999999999999987
Q ss_pred -----CC---HHHHHHHHHhcCChHHHHHHHHHhhhc
Q 000162 967 -----NF---FSECLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 967 -----Gd---~~kAIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
++ +-....+|...++|++|+...++..+.
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22 122334777889999999888765543
No 195
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.22 E-value=0.063 Score=58.45 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+|||||||++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999997
No 196
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=92.21 E-value=0.17 Score=70.50 Aligned_cols=154 Identities=10% Similarity=0.051 Sum_probs=88.4
Q ss_pred cEEEEecCCCCChhhHhhhccCC-CcceE--EEEecCCCCCccc-ccccccccccCccHHHHHHh-CCCC---ceecccc
Q 000162 5 KFVVIDEAAQLKESESAIPLQLP-CIQHA--ILVGDEVQLPAMV-ESSVSGEAYFGRSLFERLSY-LGHP---KHLLSMQ 76 (1987)
Q Consensus 5 DlVIIDEASQ~~E~e~LipL~l~-~~krl--ILVGD~kQLpPiV-~s~~~~~~gl~~SLFeRL~~-~g~p---~~~L~~Q 76 (1987)
++|+|||+...+..+.-+.-.+. ..+++ ++|||+.+.+... ...+-...|.....+.++.. .+++ .+.|+.+
T Consensus 203 ~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~L~~n 282 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYKELSGTE 282 (1166)
T ss_dssp CEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTTCTTHHHHHHHHHHHHHHHHTTCCEEEEEECSCS
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCCCcchhHHHHHHHHHHHHHHcCCCcccceecCCC
Confidence 68999999999987754332222 23444 4679976543100 00011111111222333322 3444 6789999
Q ss_pred cCCCccccccccccccCCccccCccccccccccccCCCCCCCCeEEEEeCCCcccccccccCCHHHHHHHHHHHHHHHHH
Q 000162 77 YRMHPSISFFPNSYFYENKIRDAPTVRKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILRNLYKA 156 (1987)
Q Consensus 77 YRmhP~Is~f~s~~FY~g~L~~~~~v~~~~~~~~~l~~p~~~pl~fidV~~g~E~~~~~S~~N~~Ea~~V~~lV~~L~~~ 156 (1987)
||+.+.|..+++..+.... . .. .+.. ..++.++.. . .-..|++.|...+..+...
T Consensus 283 yRs~~~il~~i~~~~~~~~-----~---~~-----~~~~-~~~i~i~~~-~----------~~~~Ea~~ia~~I~~l~~~ 337 (1166)
T 3u4q_B 283 RHTKTPELAHLEAQYEARP-----A---IP-----YAEK-QEALTVMQA-A----------NRRAELEGIAREIHALVRE 337 (1166)
T ss_dssp TTTTCHHHHHHHHSSSCSS-----C---CC-----CCSC-CSSEEEEEE-S----------SHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhHhhcC-----C---Cc-----cCCC-CCCeEEEEc-C----------ChHHHHHHHHHHHHHHHHh
Confidence 9999998877765543110 0 00 0111 123444433 1 1246899999988888762
Q ss_pred hhcccCCccEEEEccCH-HHHHHHHHHhhh
Q 000162 157 WVESKEKLSIGIVSPYS-AQVIAIQEKLGS 185 (1987)
Q Consensus 157 ~~~~~~~~sIgIITPY~-aQv~~Ir~~L~~ 185 (1987)
.+....+|+|+++.+ .|...+...|.+
T Consensus 338 --~g~~~~diAVL~R~~~~~~~~i~~~L~~ 365 (1166)
T 3u4q_B 338 --KGYRYKDVAILARQPEDYKDMVKEVFAD 365 (1166)
T ss_dssp --SCCCGGGEEEEESCGGGTHHHHHHHHHH
T ss_pred --cCCChhheEEEeCChHHHHHHHHHHHHH
Confidence 124567999999997 588889888865
No 197
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.14 E-value=0.064 Score=56.30 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.3
Q ss_pred ccCCcEEEEcCCCCChhHHH
Q 000162 523 LFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 523 ~~~~~~iItGgPGTGKTTVI 542 (1987)
....+++|+|.||||||+++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34678999999999999994
No 198
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.11 E-value=0.92 Score=57.53 Aligned_cols=149 Identities=16% Similarity=0.031 Sum_probs=99.5
Q ss_pred CCHHH-HHHHHHHHHHhcCHHHHHHHHHHhcccc----hh---HHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHc
Q 000162 840 SSPEE-WKSRGIKLFYENNYEMATICFEKAKDTY----WE---GRSKATGLKAASDHIRSSNPLEANVILREAANIFEAI 911 (1987)
Q Consensus 840 stpee-WkklA~~l~~~g~ye~A~k~F~rAgd~~----la---~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~ 911 (1987)
.+|+. ++..=..+.+.|+++.|.++|.++.... .. .+..++.. +..... ....+.+++|-++|.++
T Consensus 23 ~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~---~~~~~~---~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 23 QSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSL---AEAATE---SSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp -CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT---CCCCSS---SSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh---CCchhh---hhhcchHHHHHHHHHHH
Confidence 35553 4444456677899999999999865421 11 11111110 000000 01123466777777653
Q ss_pred ---C------CHHHHHHHHHHhCCHHHHHHHHHHhc------ChhHHHHHHHHHHHcCCHHHHHHHHHhc---C------
Q 000162 912 ---G------KADSAAKCFYDLGEYERAGKIYEERC------GKPELEKAGECFFLAGQYKHAAEVYARG---N------ 967 (1987)
Q Consensus 912 ---G------~~dkAAk~y~kaGdyekA~eLy~e~~------~~~ll~~aAe~fE~agqy~kAAeLYeKa---G------ 967 (1987)
| -|.-.+..|.++|++++|.+++.+.. +...|...-..|.+.|++++|.++|.+. |
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 2 14566899999999999999987621 1345778888999999999999999875 2
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 968 FFSECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 968 d~~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
-|...|.+|.+.+++++|.+++++-.+
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 368899999999999999999966544
No 199
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=92.03 E-value=1.1 Score=42.48 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~k 971 (1987)
.+...+..|...|++++|+++| ++|+++.. .....+...|.++...|+|++|.+.|.++ .+. ..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~------~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCY------SEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHH------HHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3556677777888888888888 45554421 12355778899999999999999999887 121 23
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhc
Q 000162 972 CLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
...++...+++++|.+..++..+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 345777888899888888665443
No 200
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=91.99 E-value=0.64 Score=48.45 Aligned_cols=88 Identities=15% Similarity=0.016 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HH
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF---FS 970 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~ 970 (1987)
..+...+..|.+.|++++|+++| ++|+++... ....+...|.++...|+|++|.+.|.++ .+ +-
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~------~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLY------TQALSIAPA--NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------HHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------HHHHHhCCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35667788888899999999999 666666321 2456888999999999999999999987 22 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhh
Q 000162 971 ECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 971 kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
....+|...+++++|.+..++..+
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 334467778888888887765443
No 201
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.94 E-value=0.07 Score=58.21 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|||+|||||||+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 347899999999999996
No 202
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.88 E-value=0.067 Score=57.12 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999996
No 203
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.85 E-value=0.084 Score=57.13 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|+|||||||+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999996
No 204
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.85 E-value=0.077 Score=58.53 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+|||||||++
T Consensus 10 ~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp SCEEEEEESTTSSHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 457899999999999997
No 205
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.81 E-value=0.075 Score=59.05 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=14.1
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|+|||||||++
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999997
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.79 E-value=0.081 Score=56.51 Aligned_cols=17 Identities=47% Similarity=0.814 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+||+||||++
T Consensus 5 ~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 47899999999999996
No 207
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.79 E-value=0.062 Score=56.70 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+||+||||++
T Consensus 2 ~~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFA 18 (179)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46789999999999997
No 208
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=91.75 E-value=1.7 Score=44.22 Aligned_cols=85 Identities=19% Similarity=0.065 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HHHH
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF---FSEC 972 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~kA 972 (1987)
+...|..|.+.|++++|+++| ++|+++.. .....+...|.++...|+|++|.+.|.++ ++ +-..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~------~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIF------QALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHH------HHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 445667777889999999888 55655421 12356778999999999999999999987 22 2334
Q ss_pred HHHHHhcCChHHHHHHHHHhh
Q 000162 973 LAVCSRGELFDIGLQYINYWK 993 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy~ 993 (1987)
..+|...+++++|.+..++..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 457788889998888876543
No 209
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.73 E-value=0.077 Score=57.45 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+|||||||++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999997
No 210
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.70 E-value=0.065 Score=57.07 Aligned_cols=18 Identities=39% Similarity=0.750 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 567899999999999997
No 211
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.69 E-value=0.071 Score=59.33 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=14.1
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|+|||||||++
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999997
No 212
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=91.65 E-value=12 Score=46.25 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHHHHhc---CHHHHHHHHHHhcccch--hHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcC
Q 000162 838 VASSPEEWKSRGIKLFYEN---NYEMATICFEKAKDTYW--EGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIG 912 (1987)
Q Consensus 838 ~~stpeeWkklA~~l~~~g---~ye~A~k~F~rAgd~~l--a~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G 912 (1987)
...+|.-+..+|..+...| +++.|.+.|.++-+..- +......+..-........+...+...|.+|+ -|
T Consensus 172 ~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g 246 (452)
T 3e4b_A 172 LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PG 246 (452)
T ss_dssp TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GG
T ss_pred HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CC
Confidence 3556778899999999999 99999999999754211 11001111110111112234444455555554 11
Q ss_pred C----HHHHHHHH--HHhCCHHHHHHHHHHh---cChhHHHHHHHHHHHcC-----CHHHHHHHHHhcC
Q 000162 913 K----ADSAAKCF--YDLGEYERAGKIYEER---CGKPELEKAGECFFLAG-----QYKHAAEVYARGN 967 (1987)
Q Consensus 913 ~----~dkAAk~y--~kaGdyekA~eLy~e~---~~~~ll~~aAe~fE~ag-----qy~kAAeLYeKaG 967 (1987)
. +..+.-+| ...+++++|++.|++. +....+...|.+|. .| ++.+|.+.|.++-
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 1 11122113 3456666666666542 22345667888887 45 8889998888874
No 213
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=91.61 E-value=0.86 Score=55.31 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHh--------------cChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEER--------------CGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~--------------~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+...|..|.+.|++++|+++| ++|++++... .....+...|.++.+.|+|++|.+.|.++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y------~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKY------TKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHH------HHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 556667777888888888888 4555533221 01245778999999999999999999887
Q ss_pred -----CCH---HHHHHHHHhcCChHHHHHHHHHhhhc
Q 000162 967 -----NFF---SECLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 967 -----Gd~---~kAIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
.+. -....+|...+++++|+...++..+.
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 111 22334677888899888887655443
No 214
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=91.56 E-value=1.6 Score=45.42 Aligned_cols=87 Identities=15% Similarity=0.030 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~k 971 (1987)
.+...+..|.+.|++++|+.+| ++|+++.. .....+...|.++...|+|++|.+.|.++ ++. -.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~------~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVF------QALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHH------HHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3556677888889999999998 56665521 12456778999999999999999999987 222 22
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 000162 972 CLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy~~ 994 (1987)
...+|...+++++|....++..+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 34477788889988887765433
No 215
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=91.34 E-value=3 Score=54.55 Aligned_cols=131 Identities=9% Similarity=0.012 Sum_probs=73.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHhccc---chhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHH
Q 000162 848 RGIKLFYENNYEMATICFEKAKDT---YWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEA---IGKADSAAKCF 921 (1987)
Q Consensus 848 lA~~l~~~g~ye~A~k~F~rAgd~---~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~---~G~~dkAAk~y 921 (1987)
.-+.++-.|+||.|+...-+...+ +++.....+++-.....+.+.++....-.|-.....|.+ .++...|+++|
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~ 379 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVEYL 379 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----------------CHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 456666779999999977766332 222222223333322233332222223335556666654 56788888877
Q ss_pred HHhCCH--HHHHHHHHH--------------h-----------cC------------------hhHHHHHHHHHHHcCCH
Q 000162 922 YDLGEY--ERAGKIYEE--------------R-----------CG------------------KPELEKAGECFFLAGQY 956 (1987)
Q Consensus 922 ~kaGdy--ekA~eLy~e--------------~-----------~~------------------~~ll~~aAe~fE~agqy 956 (1987)
.-.... .+...++.+ + .| +....++|.-++..|.+
T Consensus 380 ~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~~G~~ 459 (661)
T 2qx5_A 380 VLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRADEDGRI 459 (661)
T ss_dssp HGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHHHCCCH
Confidence 754332 112222111 0 00 12356789999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 000162 957 KHAAEVYARGNFFSECLAVCSR 978 (1987)
Q Consensus 957 ~kAAeLYeKaGd~~kAIemy~k 978 (1987)
++|+++|.-+|+|++|+++..+
T Consensus 460 ~dAi~LY~La~~~d~vl~lln~ 481 (661)
T 2qx5_A 460 YDSILLYQLAEEYDIVITLVNS 481 (661)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999998765
No 216
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.33 E-value=0.094 Score=57.89 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 9 ~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 347899999999999997
No 217
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.28 E-value=0.082 Score=58.36 Aligned_cols=16 Identities=44% Similarity=0.501 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+.|||+|||||||+.
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999996
No 218
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.25 E-value=0.1 Score=56.48 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+|||||||+.
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 357899999999999996
No 219
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.21 E-value=0.098 Score=58.25 Aligned_cols=18 Identities=17% Similarity=0.549 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999997
No 220
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.18 E-value=0.095 Score=58.68 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.1
Q ss_pred cEEEEcCCCCChhHHHHHH
Q 000162 527 STFILGRSGTGKTTILTMK 545 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVIIik 545 (1987)
+.+|||+|||||||+++..
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 6789999999999997433
No 221
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.18 E-value=0.12 Score=56.20 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 38 ~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346999999999999997
No 222
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.17 E-value=0.15 Score=58.29 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=33.1
Q ss_pred ccccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 507 ELDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 507 e~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.....+++.+.|++|+.. .+..+|.|++|||||.+++.-+.
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHH
Confidence 345567999999999987 55699999999999999854333
No 223
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.15 E-value=0.094 Score=56.61 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||++
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999996
No 224
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.14 E-value=0.1 Score=56.73 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 9 ~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457899999999999997
No 225
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.13 E-value=0.11 Score=56.05 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.|||||||++
T Consensus 11 ~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCeEEEEeCCCCCHHHHH
Confidence 467999999999999996
No 226
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.09 E-value=0.091 Score=56.81 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||+.
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36789999999999996
No 227
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.06 E-value=0.09 Score=58.47 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.-.+.|||||||||||+.
T Consensus 12 ~~iIgltG~~GSGKSTva 29 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 447789999999999997
No 228
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.03 E-value=0.097 Score=56.50 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.|||||||++
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999997
No 229
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.03 E-value=0.11 Score=56.14 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.|||||||++
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999997
No 230
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.01 E-value=0.11 Score=58.11 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+.|+|+||+||||++
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999998
No 231
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.97 E-value=0.11 Score=55.24 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999996
No 232
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=90.91 E-value=6.5 Score=48.61 Aligned_cols=54 Identities=6% Similarity=-0.079 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHcC---CHHHHHHHHHhc---CCHH-----HHHHHHHhc----CChHHHHHHHHHhh
Q 000162 940 KPELEKAGECFFLAG---QYKHAAEVYARG---NFFS-----ECLAVCSRG----ELFDIGLQYINYWK 993 (1987)
Q Consensus 940 ~~ll~~aAe~fE~ag---qy~kAAeLYeKa---Gd~~-----kAIemy~ka----k~wd~AlrLi~qy~ 993 (1987)
...+...|..|...| ++.+|.+.|.++ |... ....+|..+ +++++|++..++-.
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 345667788888888 888888888876 2221 123355555 67777777765433
No 233
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=90.89 E-value=1.4 Score=47.46 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC--------------hhHHHHHHHHHHHcCCHHHHHHHHH
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG--------------KPELEKAGECFFLAGQYKHAAEVYA 964 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~--------------~~ll~~aAe~fE~agqy~kAAeLYe 964 (1987)
..+...|..|...|++++|+++| ++|+++..+... ...+...|.++...|+|++|.+.|.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKY------KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------HHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34667778888889999999988 455544222000 1457789999999999999999998
Q ss_pred hc-----CCH---HHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 965 RG-----NFF---SECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 965 Ka-----Gd~---~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
++ .+. -....+|...+++++|....++..+
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 87 121 2233467788889988888765443
No 234
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.85 E-value=0.11 Score=56.27 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+|||||||+.
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999997
No 235
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.81 E-value=1.8 Score=42.31 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh---hHHHHHHHHHHHcCCHHHHHHHHHhc-----CC------
Q 000162 903 EAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGK---PELEKAGECFFLAGQYKHAAEVYARG-----NF------ 968 (1987)
Q Consensus 903 eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~---~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd------ 968 (1987)
..|..+...|++++|+++| +++++.... .. ..+...|.++...|+|++|.+.|.++ +.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~------~~~~~~~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLF------LSFLELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG 78 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHH------HHHHHHCSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH------HHHHHHCCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH
Confidence 4455566677777777776 344443211 12 35778999999999999999999886 22
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 969 FSECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 969 ~~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
+-....++.+.+++++|....++..+
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22334567788899988888766544
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.74 E-value=0.094 Score=56.25 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.|||||||+.
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999996
No 237
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.74 E-value=0.082 Score=56.53 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.||+||||++
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35789999999999996
No 238
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.74 E-value=0.11 Score=59.01 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=17.4
Q ss_pred ccCCcEEEEcCCCCChhHHH
Q 000162 523 LFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 523 ~~~~~~iItGgPGTGKTTVI 542 (1987)
..++.++|+|.|||||||++
T Consensus 37 ~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34678999999999999996
No 239
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.63 E-value=0.12 Score=56.27 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999997
No 240
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=90.60 E-value=0.085 Score=66.31 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000162 844 EWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYD 923 (1987)
Q Consensus 844 eWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~k 923 (1987)
.|..+|..++.+|+|++|..+|.+|=... |.. ...+...|..|.+.|++++|+++|
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~---------------------p~~-~~~~~~lg~~~~~~g~~~~A~~~~-- 63 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN---------------------PSN-AIYYGNRSLAYLRTECYGYALGDA-- 63 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------------Ccc-HHHHHHHHHHHHHhcCHHHHHHHH--
Confidence 35566777788888888888888653310 000 123556677777888888888887
Q ss_pred hCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 924 LGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
++|+++.. .....+...|..|...|+|++|.+.|.++
T Consensus 64 ----~~al~l~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 64 ----TRAIELDK--KYIKGYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp ----HHHHHSCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555421 11345667788888888888888887765
No 241
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.60 E-value=0.12 Score=60.10 Aligned_cols=18 Identities=39% Similarity=0.864 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++.++|+|.|||||||++
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 678999999999999997
No 242
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=90.60 E-value=2.5 Score=44.63 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 000162 902 REAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF 968 (1987)
Q Consensus 902 ~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd 968 (1987)
.+.+..|.+.|++++|+.+| ++|+++... ....+...|..+...|++++|.++|.++-.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~------~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVI------QTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHH------HTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCHHHHHHHH------HHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 35556666777777777777 333333211 235577889999999999999999998743
No 243
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.59 E-value=0.11 Score=56.81 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+||+||||++
T Consensus 5 ~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46899999999999997
No 244
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.58 E-value=0.11 Score=60.68 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+|||||||++
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 347999999999999997
No 245
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.56 E-value=0.12 Score=56.84 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|.|||||||++
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999997
No 246
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.54 E-value=1.3 Score=42.52 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CC---HH
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NF---FS 970 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd---~~ 970 (1987)
..+...+..|...|++++|+++| ++++++.. .....+...|.++...|+|++|.+.|.++ .+ +-
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~------~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFY------GKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHH------HHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 34666777888888999998888 55554421 12355778899999999999999999886 22 23
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhh
Q 000162 971 ECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 971 kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
....+|...+++++|....++..+
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 334577888899988888765443
No 247
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=90.52 E-value=3.6 Score=44.88 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=56.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHh--------cC------hhHHHHHHHHHHHcCCHHHHHHHHHhc--
Q 000162 903 EAANIFEAIGKADSAAKCFYDLGEYERAGKIYEER--------CG------KPELEKAGECFFLAGQYKHAAEVYARG-- 966 (1987)
Q Consensus 903 eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~--------~~------~~ll~~aAe~fE~agqy~kAAeLYeKa-- 966 (1987)
.-+..+.+.|++++|+.+|. +|+++..+. .. .......|.++...|+|++|.+.|.++
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~------~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFR------QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHH------HHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH------HHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455557788888888884 444331110 00 111223899999999999999999987
Q ss_pred ---CCH---HHHHHHHHhcCChHHHHHHHHHhhhc
Q 000162 967 ---NFF---SECLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 967 ---Gd~---~kAIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
++. -....+|...+++++|++..++..+.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 222 23344778889999999888765443
No 248
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=90.50 E-value=2.6 Score=52.76 Aligned_cols=116 Identities=9% Similarity=-0.056 Sum_probs=67.8
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccc---hh-HHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCC-
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTY---WE-GRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGK- 913 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~---la-~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~- 913 (1987)
..++..|..+|......|+++.|..+|.++=... .. .+...... ....+.+++|.++|.++-.
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~------------~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF------------ARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHH------------HHHhcCHHHHHHHHHHHHhc
Confidence 3467888888888888899999999988863311 00 11111000 1123334444444443311
Q ss_pred --------HHHHHHHHHHhCCHHHHHHHHHHh-----cChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 914 --------ADSAAKCFYDLGEYERAGKIYEER-----CGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 914 --------~dkAAk~y~kaGdyekA~eLy~e~-----~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
...|.-+|...|++++|..+|+.. .....+...|+.+...|++++|..+|.++
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 111222234566666666665542 12456788888888889999999998886
No 249
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.42 E-value=0.11 Score=59.51 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+||+||||++
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446899999999999997
No 250
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.41 E-value=1.8 Score=42.78 Aligned_cols=85 Identities=18% Similarity=0.054 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~k 971 (1987)
.+...+..|...|++++|+.+| .+|+++... ....+...|.++...|+|++|.+.|.++ ++. -.
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~------~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACY------GRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHH------HHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 4667778888889999999888 566655221 2356788999999999999999999887 222 23
Q ss_pred HHHHHHhcCChHHHHHHHHHh
Q 000162 972 CLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy 992 (1987)
...+|...+++++|....++.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 344677788888888777543
No 251
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.40 E-value=0.13 Score=61.10 Aligned_cols=17 Identities=53% Similarity=0.870 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
++++|+|+|||||||++
T Consensus 38 ~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SSEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 58999999999999997
No 252
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.36 E-value=1.9 Score=41.02 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---SE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~k 971 (1987)
.+...+..|...|++++|+++| +++.++.. .....+...|.++...|++++|..+|.++ .+. ..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~------~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYY------QKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------HHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 4556677788888888888888 44444321 12345778899999999999999999886 222 23
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 000162 972 CLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy~~ 994 (1987)
...+|...+++++|....++..+
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 44567788888888888765443
No 253
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.36 E-value=0.12 Score=56.63 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+|||||||++
T Consensus 6 ~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6789999999999997
No 254
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=90.22 E-value=0.14 Score=56.19 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=32.4
Q ss_pred cccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHH
Q 000162 508 LDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKL 546 (1987)
Q Consensus 508 ~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl 546 (1987)
....+++.+-|++||.. ...++|.|++|||||++.++-+
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~ 69 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIA 69 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHH
Confidence 34468999999999987 6789999999999999984333
No 255
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.19 E-value=0.14 Score=56.33 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
-.++|+|+|||||||++
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999996
No 256
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.13 E-value=0.11 Score=60.29 Aligned_cols=18 Identities=39% Similarity=0.791 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 668999999999999996
No 257
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.13 E-value=0.1 Score=56.06 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=11.3
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.|||||||++
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999996
No 258
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.11 E-value=0.14 Score=54.45 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+|||||||++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999996
No 259
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.09 E-value=0.12 Score=56.78 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||++
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36889999999999996
No 260
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.08 E-value=0.21 Score=54.73 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=30.2
Q ss_pred cccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 512 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 512 I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.++++-|++||.. .+.++|.+++|||||++.++-+.
T Consensus 22 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 60 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60 (207)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHH
Confidence 3789999999988 66899999999999998644444
No 261
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.03 E-value=0.16 Score=58.43 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
..+++|+|.||||||+++
T Consensus 29 ~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA 46 (265)
T ss_dssp CSCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 679999999999999997
No 262
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.00 E-value=0.15 Score=60.10 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..+||+|.||+||||++
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 347899999999999997
No 263
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.92 E-value=0.13 Score=55.72 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.||+||||++
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999996
No 264
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=89.87 E-value=3.5 Score=39.60 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCCH----------
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNFF---------- 969 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd~---------- 969 (1987)
.+...|..|...|++++|+.+| ++|+++.. .....+...|.++...|+|++|.++|.++-..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~------~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHY------DKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHH------HHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 3556677777888888888887 45554421 12345778889999999999999988876221
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHh
Q 000162 970 -----SECLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 970 -----~kAIemy~kak~wd~AlrLi~qy 992 (1987)
-....+|...+++++|.+..++.
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 12234566777777777766543
No 265
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.78 E-value=0.13 Score=59.29 Aligned_cols=18 Identities=50% Similarity=0.750 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|.||+||||++
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999996
No 266
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=89.77 E-value=1.8 Score=40.49 Aligned_cols=85 Identities=11% Similarity=-0.076 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc----CC---H---HH
Q 000162 902 REAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG----NF---F---SE 971 (1987)
Q Consensus 902 ~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa----Gd---~---~k 971 (1987)
...+..|...|++++|+.+| ++|+++.. .....+...|.++...|+|++|.+.|.++ .. . ..
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~------~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLF------EKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHH------HHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHH------HHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 35566777788888888887 55555421 12355778999999999999999999887 22 2 22
Q ss_pred HHHHHHhc-CChHHHHHHHHHhhh
Q 000162 972 CLAVCSRG-ELFDIGLQYINYWKQ 994 (1987)
Q Consensus 972 AIemy~ka-k~wd~AlrLi~qy~~ 994 (1987)
...+|.+. +++++|.+.+.+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 34466788 888888888865544
No 267
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.64 E-value=0.16 Score=58.14 Aligned_cols=18 Identities=39% Similarity=0.829 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|.|||||||++
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 567999999999999996
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.60 E-value=0.17 Score=55.93 Aligned_cols=18 Identities=50% Similarity=0.798 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999997
No 269
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.56 E-value=0.14 Score=56.35 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+.|+|+||+||||++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999997
No 270
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=89.53 E-value=0.97 Score=44.03 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---H
Q 000162 899 VILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFF---S 970 (1987)
Q Consensus 899 ~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~ 970 (1987)
..+...|..|...|++++|+++| ++|+++.. .....+...|.++...|++++|.++|.++ .+. -
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~------~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHY------TEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHH------HHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------HHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 34666777888888888888888 44443311 11345778899999999999999999886 221 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhh
Q 000162 971 ECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 971 kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
....+|.+.+++++|.+..++..+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 234567788889988888865443
No 271
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.46 E-value=0.16 Score=54.36 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=15.0
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||++
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6889999999999996
No 272
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.45 E-value=0.21 Score=57.71 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 64 ~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 557999999999999996
No 273
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.44 E-value=0.13 Score=60.05 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 568999999999999996
No 274
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.41 E-value=0.15 Score=57.87 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCCChhHHH--HHHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.++++||.|+||+||||.+ |.+-|
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678899999999999997 44444
No 275
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.39 E-value=0.16 Score=55.30 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||++
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999997
No 276
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.38 E-value=0.67 Score=45.66 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=55.0
Q ss_pred hcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHH
Q 000162 855 ENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKCFYDLGEYERAGKIY 934 (1987)
Q Consensus 855 ~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy 934 (1987)
.|+|+.|+.+|.++=.... .+|. ....+...+..|...|++++|+++| ++|+++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~------------------~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~------~~al~~~ 57 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL------------------QGKD-LAECYLGLGSTFRTLGEYRKAEAVL------ANGVKQF 57 (117)
T ss_dssp ----CCCHHHHHHHHSSCC------------------CHHH-HHHHHHHHHHHHHHTTCHHHHHHHH------HHHHHHC
T ss_pred CCcHHHHHHHHHHHHHcCC------------------CCcc-HHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHhC
Confidence 4778888888886643210 0111 1234667788888999999999998 6676663
Q ss_pred HHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 935 EERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 935 ~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.+ ....+...|.++...|++++|.+.|.++
T Consensus 58 p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 58 PN--HQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CC--chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 2355777888888888888888877665
No 277
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=89.31 E-value=0.11 Score=49.62 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
+.+.|..+|..++..|+|+.|..+|.++-...- .+ ...+...+..|...|++++|+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------------------~~----~~~~~~lg~~~~~~g~~~~A~~~ 60 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP------------------QN----PVGYSNKAMALIKLGEYTQAIQM 60 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------------------CC----HHHHHHHHHHHHHhcCHHHHHHH
Confidence 456789999999999999999999987643100 00 12345667778888888888888
Q ss_pred H
Q 000162 921 F 921 (1987)
Q Consensus 921 y 921 (1987)
|
T Consensus 61 ~ 61 (111)
T 2l6j_A 61 C 61 (111)
T ss_dssp H
T ss_pred H
Confidence 8
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.28 E-value=0.14 Score=55.46 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.||+||||++
T Consensus 9 g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TEEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 347899999999999995
No 279
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.21 E-value=0.23 Score=55.25 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=22.2
Q ss_pred cCHHHHHhhcc--CCcEEEEcCCCCChhHHH
Q 000162 514 VTDEQLEMILF--PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 514 l~~eQk~AI~~--~~~~iItGgPGTGKTTVI 542 (1987)
.+..+++.... ...++|+|.||+||||++
T Consensus 12 ~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTELRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHHHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhcccCCCCCEEEEECCCCCCHHHHH
Confidence 35667766544 347789999999999997
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.19 E-value=0.18 Score=55.61 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.||+||||+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 347999999999999997
No 281
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.14 E-value=0.24 Score=54.68 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=22.0
Q ss_pred cCHHHHHhhcc--CCcEEEEcCCCCChhHHH
Q 000162 514 VTDEQLEMILF--PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 514 l~~eQk~AI~~--~~~~iItGgPGTGKTTVI 542 (1987)
++..++.+... ...++|+|.||+||||++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 45556655544 457889999999999997
No 282
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.13 E-value=0.17 Score=56.29 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=14.2
Q ss_pred EEEEcCCCCChhHHH
Q 000162 528 TFILGRSGTGKTTIL 542 (1987)
Q Consensus 528 ~iItGgPGTGKTTVI 542 (1987)
++|+|+||+||||++
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999997
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.05 E-value=0.17 Score=55.49 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+.|+|++|+||||++
T Consensus 8 ~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 47889999999999997
No 284
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.96 E-value=0.19 Score=55.11 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 6 g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 347889999999999997
No 285
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.92 E-value=0.21 Score=53.73 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.|||||||+.
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999996
No 286
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.88 E-value=0.18 Score=59.35 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|.|+||||||+++
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 557888999999999996
No 287
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.87 E-value=0.23 Score=58.95 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|.|||||||++
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56999999999999997
No 288
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.80 E-value=0.23 Score=56.20 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=28.0
Q ss_pred CcccCHHHHHhhcc---CCcEEEEcCCCCChhHHH
Q 000162 511 PFEVTDEQLEMILF---PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 511 ~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVI 542 (1987)
.+.+.+.|+++|.. ...++|.|++||||||.+
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQV 93 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhH
Confidence 46678899999887 678999999999999987
No 289
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.69 E-value=0.17 Score=57.99 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...+.|||+|||||||+.
T Consensus 22 ~~iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVC 39 (252)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 346889999999999997
No 290
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.67 E-value=0.21 Score=54.72 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.+.|+|+|||||||+.
T Consensus 3 ~~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVA 19 (208)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999997
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.66 E-value=0.2 Score=54.68 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.++.|+|++|+||||++ +..++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999998 55554
No 292
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=88.59 E-value=7.6 Score=47.92 Aligned_cols=130 Identities=12% Similarity=-0.009 Sum_probs=88.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHH-HHHH-HHHHHcCC--HHHHHHHHHhcCCHHHHHHHHHh
Q 000162 903 EAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPEL-EKAG-ECFFLAGQ--YKHAAEVYARGNFFSECLAVCSR 978 (1987)
Q Consensus 903 eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll-~~aA-e~fE~agq--y~kAAeLYeKaGd~~kAIemy~k 978 (1987)
+...-..=.|+++.|+++-.+.+.|.+|.-|... ++.+++ .+.- +|+.+... .-...-...-.+++...+.-+ .
T Consensus 148 ~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~-gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~~~-~ 225 (399)
T 2pm7_A 148 QTISKNLVSGNIKSAVKNSLENDLMMEAMVIALD-SNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVENL-D 225 (399)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHHHB-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHh-cCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHhcC-C
Confidence 3333344479999999999999999999988754 667777 6655 46665543 333333455569999888764 5
Q ss_pred cCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHH
Q 000162 979 GELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDF-----LQSCALHYYQLNDKKSMMKFVKA 1039 (1987)
Q Consensus 979 ak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~-----le~cA~~ylklgD~~~Am~~vk~ 1039 (1987)
.+.|.+++-++-.|......+ -......++..+ .+.|-.||+..|+++..+.+...
T Consensus 226 l~~WkE~La~i~t~a~~e~~e-----f~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~ 286 (399)
T 2pm7_A 226 VSQWKFISKAIQNLYPNDIAQ-----RNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLS 286 (399)
T ss_dssp GGGHHHHHHHHHHHCTTCHHH-----HHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCccHhH-----HHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHH
Confidence 889999999998887532001 111122333333 36788899999999988887654
No 293
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.56 E-value=0.21 Score=55.89 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||++
T Consensus 5 ~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36789999999999997
No 294
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.53 E-value=0.2 Score=60.02 Aligned_cols=18 Identities=39% Similarity=0.805 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|+|||||||++
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 678999999999999997
No 295
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=88.48 E-value=1.2 Score=44.80 Aligned_cols=84 Identities=12% Similarity=0.020 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCHH---HH
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG-----NFFS---EC 972 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~~---kA 972 (1987)
+.+.+..+.+.|++++|+.+| ++|+++... ....+...|.++...|++++|.+.|.++ ++.+ ..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~------~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAF------EAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------HHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------HHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 445667777888888888888 666665221 2355778999999999999999999887 2221 12
Q ss_pred HHHHHhcCChHHHHHHHHHh
Q 000162 973 LAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 973 Iemy~kak~wd~AlrLi~qy 992 (1987)
..+|...+++++|+...++.
T Consensus 92 a~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 23556666777777666443
No 296
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.44 E-value=0.21 Score=55.29 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 12 ~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 458899999999999997
No 297
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=88.41 E-value=3.3 Score=45.43 Aligned_cols=123 Identities=13% Similarity=0.032 Sum_probs=66.2
Q ss_pred cCCHHHHHHHHHHHHHhc----CHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCH
Q 000162 839 ASSPEEWKSRGIKLFYEN----NYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKA 914 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g----~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~ 914 (1987)
..++.-+..+|..+.. + +++.|.++|.++-+..........+..-....-...+...+...|.+|++ .|..
T Consensus 47 ~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~ 121 (212)
T 3rjv_A 47 QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR----DSES 121 (212)
T ss_dssp TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS----STTS
T ss_pred cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH----cCCC
Confidence 5688889999999888 6 89999999999855432221111111100000112233333333333332 2320
Q ss_pred ---HHH----HHHHHH----hCCHHHHHHHHHHhc----ChhHHHHHHHHHHHc-C-----CHHHHHHHHHhc
Q 000162 915 ---DSA----AKCFYD----LGEYERAGKIYEERC----GKPELEKAGECFFLA-G-----QYKHAAEVYARG 966 (1987)
Q Consensus 915 ---dkA----Ak~y~k----aGdyekA~eLy~e~~----~~~ll~~aAe~fE~a-g-----qy~kAAeLYeKa 966 (1987)
..| ..+|.. .+++++|.+.|++.+ ....+...|.+|..- | ++++|.+.|.++
T Consensus 122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 122 455555 566777777766532 123455666666653 2 667777766665
No 298
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.40 E-value=0.15 Score=60.55 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|.|+|||||||++
T Consensus 46 ~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp TCCEEEESCCCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 789999999999999997
No 299
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.31 E-value=0.22 Score=56.06 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=16.9
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+||.|+||+||||.. |.+-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999997 54444
No 300
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=88.22 E-value=3.5 Score=39.58 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
+...|..|.+.|++++|+++| ++|+++... ....+...|.++...|++++|.+.|.++
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~------~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALF------EELVETDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------HHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------HHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556777888889999999988 666666221 2345778888999999998888887763
No 301
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.19 E-value=2.4 Score=42.17 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC----hhHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH-
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCG----KPELEKAGECFFLAGQYKHAAEVYARG-----NFF- 969 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~----~~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~- 969 (1987)
.+...+..|...|++++|+++|.+ ++++. .. ...+...|.++...|+|++|.+.|.++ .+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~------a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQ------ALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHH------HHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH------HHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 466777888888899999988843 33321 11 244677899999999999999999886 222
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 970 --SECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 970 --~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
-....+|...+++++|....++..+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234466777888888877765443
No 302
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=88.18 E-value=2.5 Score=41.07 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAA 918 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAA 918 (1987)
..++..|..+|..+...|+|+.|..+|.++-... |.. ...+...+..|...|++++|.
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------p~~-~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---------------------PTY-SVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---------------------CCc-HHHHHHHHHHHHHcCCHHHHH
Confidence 3477889999999999999999999999764311 000 123456677888888888888
Q ss_pred HHHHHhCCHHHHHHHHHH
Q 000162 919 KCFYDLGEYERAGKIYEE 936 (1987)
Q Consensus 919 k~y~kaGdyekA~eLy~e 936 (1987)
++| ++|+++...
T Consensus 74 ~~~------~~al~~~~~ 85 (115)
T 2kat_A 74 QAW------ESGLAAAQS 85 (115)
T ss_dssp HHH------HHHHHHHHH
T ss_pred HHH------HHHHHhccc
Confidence 887 566665444
No 303
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.16 E-value=0.18 Score=56.98 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..++|.|+|||||||.+ +.+.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 36999999999999997 54443
No 304
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.15 E-value=0.24 Score=59.39 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+|||||||++
T Consensus 51 ~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCCEEEESSTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 368999999999999997
No 305
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.15 E-value=0.23 Score=53.61 Aligned_cols=16 Identities=44% Similarity=0.754 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||++
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999997
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.12 E-value=0.2 Score=54.69 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+.|+|+|||||||+.
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999996
No 307
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.10 E-value=0.22 Score=59.73 Aligned_cols=17 Identities=53% Similarity=0.860 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||++
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47999999999999997
No 308
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.03 E-value=0.21 Score=55.71 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||++
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999997
No 309
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.95 E-value=0.19 Score=59.37 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 567999999999999996
No 310
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.95 E-value=0.23 Score=62.19 Aligned_cols=18 Identities=44% Similarity=0.641 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.++++|+|+|||||||++
T Consensus 50 ~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 347999999999999997
No 311
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.95 E-value=0.36 Score=53.56 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=31.0
Q ss_pred cCcc-cCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 510 LPFE-VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 510 ~~I~-l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+++ +++-|++||.. ...++|.+++|||||.+.++-++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 3455 89999999987 56899999999999998754444
No 312
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.88 E-value=0.21 Score=55.15 Aligned_cols=17 Identities=35% Similarity=0.305 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+.|+|+||+||||++
T Consensus 22 ~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36789999999999996
No 313
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.87 E-value=0.12 Score=59.39 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 556899999999999997
No 314
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.86 E-value=0.36 Score=52.91 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=29.7
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++++-|++||.. ...+++.+++|||||.+.++-+.
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~ 62 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHH
Confidence 689999999988 56899999999999988754444
No 315
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.81 E-value=0.21 Score=58.35 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=18.0
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++++|+|.|||||||++ |.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 47999999999999998 44443
No 316
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.81 E-value=0.24 Score=55.75 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|+||+||||++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999997
No 317
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.74 E-value=0.44 Score=50.61 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+|||||||++
T Consensus 36 g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CSEEEEESSSTTTTCHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 458999999999999997
No 318
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.64 E-value=0.21 Score=58.50 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|||+|||||||++
T Consensus 76 ~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 36899999999999997
No 319
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=87.61 E-value=0.39 Score=53.43 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=29.5
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++.+-|++||.. ...++|.+++|||||.+..+-++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l 73 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL 73 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHH
Confidence 689999999987 56899999999999998644444
No 320
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.60 E-value=0.29 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=19.0
Q ss_pred CcEEEEcCCCCChhHHH--HHHHHh
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
+.+.|+|.+|+||||++ +++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 56889999999999998 666553
No 321
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.59 E-value=0.2 Score=59.58 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 457999999999999997
No 322
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=87.52 E-value=2.8 Score=49.45 Aligned_cols=122 Identities=9% Similarity=-0.053 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
..+.+..+|..+...|+|++|..+|..+-... |... ..|..| -++.+.|+++.|..+
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---------------------p~~~-~~~~~a-~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAG---------------------SEHL-VAWMKA-VVYGAAERWTDVIDQ 157 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---------------------CHHH-HHHHHH-HHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------------CchH-HHHHHH-HHHHHcCCHHHHHHH
Confidence 35677888999999999999999998764311 1111 122222 356666666666666
Q ss_pred HHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc--CC-----HHHHH----HHHHhcCChHHHHHHH
Q 000162 921 FYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG--NF-----FSECL----AVCSRGELFDIGLQYI 989 (1987)
Q Consensus 921 y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa--Gd-----~~kAI----emy~kak~wd~AlrLi 989 (1987)
|..+..|..-. +. .......|..++..|++++|...|.++ |. ...|. -++.+.|..++|..+.
T Consensus 158 l~~a~~~~d~~--~~----~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 158 VKSAGKWPDKF--LA----GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp HTTGGGCSCHH--HH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhhccCCcc--cH----HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65554432000 00 012334677777778888888877776 22 11111 1445556666666665
Q ss_pred HH
Q 000162 990 NY 991 (1987)
Q Consensus 990 ~q 991 (1987)
++
T Consensus 232 ~~ 233 (282)
T 4f3v_A 232 EW 233 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 323
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.52 E-value=0.26 Score=59.62 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...++|+|+|||||||++ |.+.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999998 44443
No 324
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.51 E-value=0.24 Score=55.69 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999996
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.50 E-value=0.27 Score=54.50 Aligned_cols=18 Identities=56% Similarity=0.824 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.++||+|++|+||||++
T Consensus 1 ~RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 367999999999999997
No 326
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.44 E-value=0.22 Score=59.12 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 55 ~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 458999999999999997
No 327
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.43 E-value=0.29 Score=54.74 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.||+||||++
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999997
No 328
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.35 E-value=0.26 Score=59.22 Aligned_cols=16 Identities=56% Similarity=0.864 Sum_probs=15.3
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.|||||||++
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999997
No 329
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.25 E-value=0.27 Score=55.57 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+|||||||++
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999997
No 330
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=87.24 E-value=0.26 Score=53.59 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+||+||||++
T Consensus 6 ~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47899999999999998
No 331
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.22 E-value=0.33 Score=58.06 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++++|+|||||||++
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999997
No 332
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.06 E-value=0.23 Score=55.28 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 347889999999999997
No 333
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.01 E-value=0.19 Score=59.69 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 567999999999999997
No 334
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.95 E-value=0.29 Score=59.42 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 568999999999999997
No 335
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=86.93 E-value=0.71 Score=55.02 Aligned_cols=54 Identities=9% Similarity=-0.065 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHHHHHHHhcCChHHHHHHHHHhhh
Q 000162 941 PELEKAGECFFLAGQYKHAAEVYARG-----NFF---SECLAVCSRGELFDIGLQYINYWKQ 994 (1987)
Q Consensus 941 ~ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kAIemy~kak~wd~AlrLi~qy~~ 994 (1987)
..+...|.++...|+|++|.+.|.++ .+. -....+|...++|++|.+..++..+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677888999999999999988887 221 2233467788888888888765443
No 336
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.90 E-value=0.28 Score=56.04 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
.-++|.|+|||||||++
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999997
No 337
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.87 E-value=0.3 Score=58.29 Aligned_cols=18 Identities=50% Similarity=0.962 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999997
No 338
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.86 E-value=0.29 Score=54.73 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.|||||||++
T Consensus 7 ~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 7 NLILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999997
No 339
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=86.84 E-value=0.31 Score=53.40 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=17.2
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+.|+|+||+||||++ |..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998 55554
No 340
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=86.73 E-value=0.28 Score=55.57 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=30.8
Q ss_pred cCcc-cCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 510 LPFE-VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 510 ~~I~-l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+|+ +++-|++||.. ...++|.+++|||||.+.++-++
T Consensus 48 ~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l 89 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISIL 89 (237)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3454 89999999987 56899999999999998754444
No 341
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.62 E-value=0.23 Score=63.04 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.++++|.|+||||||+++
T Consensus 41 ~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCEEEEECCSSSSHHHHH
T ss_pred CCeeEeecCchHHHHHHH
Confidence 789999999999999995
No 342
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.61 E-value=0.47 Score=53.33 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=29.2
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+++-|++||.. ...++|.+++|||||++.++-++
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l 84 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 84 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHH
Confidence 689999999887 67899999999999998643333
No 343
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.58 E-value=0.32 Score=60.72 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.++++|+|+|||||||++
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 358999999999999997
No 344
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.56 E-value=0.31 Score=53.89 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=17.0
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+.|+|++|+||||++ |..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 6779999999999998 44444
No 345
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.54 E-value=0.31 Score=58.63 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++.++|+|.|||||||++
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 567999999999999997
No 346
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.50 E-value=0.36 Score=57.23 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
..+++|+|.||||||+++
T Consensus 25 ~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TSCEEEESCTTSCHHHHH
T ss_pred CCcEEEECCCCchHHHHH
Confidence 778999999999999997
No 347
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=86.50 E-value=0.29 Score=55.28 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=14.3
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
-+-||||+|||||||.
T Consensus 11 ~iglTGgigsGKStv~ 26 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVA 26 (210)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3679999999999997
No 348
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.49 E-value=0.25 Score=59.02 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 467999999999999997
No 349
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.47 E-value=0.33 Score=55.26 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=16.4
Q ss_pred HHHHHhhcc-CCcEEEEcCCCCChhHHH
Q 000162 516 DEQLEMILF-PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 516 ~eQk~AI~~-~~~~iItGgPGTGKTTVI 542 (1987)
.+..++... +..++|+|+||+||||++
T Consensus 17 ~~~~~~~~~~~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 17 NLYFQSMASKLLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp ---------CCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCCcEEEEECCCCCCHHHHH
Confidence 344555444 468999999999999997
No 350
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.46 E-value=0.28 Score=53.27 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.||+||||++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5789999999999997
No 351
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.42 E-value=0.28 Score=57.69 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.|||||||++
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999996
No 352
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.27 E-value=0.46 Score=55.39 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|+|||||||++
T Consensus 39 ~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATA 55 (319)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CeEEEECcCCcCHHHHH
Confidence 35999999999999997
No 353
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.24 E-value=0.34 Score=52.60 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.||+||||++
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 347889999999999997
No 354
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.08 E-value=0.36 Score=58.44 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 457999999999999997
No 355
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.90 E-value=0.27 Score=56.75 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.||+||||++
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 36889999999999997
No 356
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=85.85 E-value=5.2 Score=43.24 Aligned_cols=85 Identities=12% Similarity=-0.113 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhc-----Ch-----hHHHHHHHHHHHcCCHHHHHHHHHhcC---
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERC-----GK-----PELEKAGECFFLAGQYKHAAEVYARGN--- 967 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~-----~~-----~ll~~aAe~fE~agqy~kAAeLYeKaG--- 967 (1987)
+..-+..+.+.|++++|+++| ++|+++-.+.. .. ..+...|.++...|+|++|.+.|.++=
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y------~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANC------RRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------HHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHH------HHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 345555566778899999988 77777643200 11 167788888888999999888877652
Q ss_pred --------CHHHHH--------HHHHhcCChHHHHHHHHH
Q 000162 968 --------FFSECL--------AVCSRGELFDIGLQYINY 991 (1987)
Q Consensus 968 --------d~~kAI--------emy~kak~wd~AlrLi~q 991 (1987)
+..+|. .++...+.+++|+...++
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 222232 345566666666665544
No 357
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.84 E-value=0.37 Score=57.33 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|+||||||+++
T Consensus 153 ~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999997
No 358
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.56 E-value=0.41 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.8
Q ss_pred CcEEEEcCCCCChhHHH--HHHHH
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..++|+|++|+||||++ +...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999 55655
No 359
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=85.51 E-value=0.55 Score=54.92 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=30.8
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHHh
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLFQ 548 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~~ 548 (1987)
++.+-|++||.. .+..+|.+++|||||++.++-+.+
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 589999999987 679999999999999988555554
No 360
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.43 E-value=0.38 Score=56.28 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|.|||||||++
T Consensus 47 ~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 36999999999999997
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.33 E-value=0.38 Score=53.18 Aligned_cols=18 Identities=39% Similarity=0.241 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...+.|+|++|+||||++
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 347889999999999997
No 362
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.31 E-value=0.31 Score=56.96 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+-++|.|+|||||||++
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 33999999999999996
No 363
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.28 E-value=0.22 Score=55.00 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=17.3
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.++|.|+||+||||++ +.+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 5789999999999998 54544
No 364
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=85.09 E-value=0.41 Score=63.15 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=31.7
Q ss_pred cCc-ccCHHHHHhhcc----CCcEEEEcCCCCChhHHHHHHHH
Q 000162 510 LPF-EVTDEQLEMILF----PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 510 ~~I-~l~~eQk~AI~~----~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+| ++.+.|.+|+.. +..++|.|++||||||++.+-++
T Consensus 26 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il 68 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGII 68 (715)
T ss_dssp TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHH
Confidence 456 899999999965 77999999999999999933333
No 365
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.07 E-value=0.62 Score=52.05 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=29.5
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++++-|++||.. ...+++.++.|||||.+.++-++
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~ 79 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGF 79 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH
Confidence 789999999987 66899999999999998744333
No 366
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.00 E-value=0.55 Score=55.54 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=29.5
Q ss_pred ccCHHHHHhhcc---C-CcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---P-RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~-~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++++.|++||.. . ..++|.+++|||||++.++-+.
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 789999999987 4 5899999999999999744444
No 367
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=84.94 E-value=0.64 Score=52.54 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=29.0
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++++-|++||.. ...+++.+++|||||.+.++-++
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l 88 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL 88 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH
Confidence 489999999987 66899999999999998644333
No 368
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.93 E-value=0.39 Score=55.74 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
.-++|.|+|||||||++
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999997
No 369
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.91 E-value=0.45 Score=56.98 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|.|||||||++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999997
No 370
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=84.83 E-value=5.4 Score=41.61 Aligned_cols=88 Identities=6% Similarity=-0.017 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHH-HHHcCCH--HHHHHHHHhc-----CCH--
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGEC-FFLAGQY--KHAAEVYARG-----NFF-- 969 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~-fE~agqy--~kAAeLYeKa-----Gd~-- 969 (1987)
.+...|.+|...|++++|+++| ++|+++... ....+...|.+ +...|++ ++|.++|.++ ++.
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~------~~al~~~p~--~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 117 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAY------RQALQLRGE--NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHHCS--CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------HHHHHcCCC--CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHH
Confidence 3566778888889999999888 566665321 24557788888 7889998 9999999887 222
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHhhhc
Q 000162 970 -SECLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 970 -~kAIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
-....+|...+++++|....++..+.
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 23344678888999999888765443
No 371
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=84.81 E-value=0.19 Score=66.15 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=30.7
Q ss_pred cCc-ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 510 LPF-EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 510 ~~I-~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+| ++.+-|++++.. ...++|.|++|+|||+++.+-++
T Consensus 21 ~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il 62 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV 62 (702)
T ss_dssp C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHH
Confidence 456 889999999988 77999999999999999844444
No 372
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=84.78 E-value=5.1 Score=41.18 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=11.1
Q ss_pred cCHHHHHHHHHHhcc
Q 000162 856 NNYEMATICFEKAKD 870 (1987)
Q Consensus 856 g~ye~A~k~F~rAgd 870 (1987)
++++.|.++|.++-+
T Consensus 9 ~d~~~A~~~~~~aa~ 23 (138)
T 1klx_A 9 KDLKKAIQYYVKACE 23 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHc
Confidence 567888888887644
No 373
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.77 E-value=0.43 Score=58.90 Aligned_cols=18 Identities=39% Similarity=0.783 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.-+++.|+||||||+++
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 667999999999999996
No 374
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.72 E-value=0.31 Score=54.95 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=12.2
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
..++.|+|++|+||||++
T Consensus 27 G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCEEEEECSCC----CHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457899999999999998
No 375
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.71 E-value=0.41 Score=57.12 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.4
Q ss_pred cEEEEcCCCCChhHHH--HHH
Q 000162 527 STFILGRSGTGKTTIL--TMK 545 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iik 545 (1987)
.++|+|+|||||||++ +.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 3999999999999997 544
No 376
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=84.67 E-value=0.77 Score=52.20 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.3
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++++-|++||.. ...+++.++.|||||.+.++-++
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l 82 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPII 82 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH
Confidence 589999999987 56899999999999998744444
No 377
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=84.66 E-value=3.4 Score=47.57 Aligned_cols=85 Identities=18% Similarity=0.040 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhcCC-----H---HH
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARGNF-----F---SE 971 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKaGd-----~---~k 971 (1987)
.+...|..|.+.|++++|+++| ++|+++.. .....+...|.++...|+|++|.+.|.++-. . -.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~------~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACY------GRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------HHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3556677788888999998888 56665521 1245678899999999999999999999722 1 22
Q ss_pred HHHHHHhcCChHHHHHHHHHh
Q 000162 972 CLAVCSRGELFDIGLQYINYW 992 (1987)
Q Consensus 972 AIemy~kak~wd~AlrLi~qy 992 (1987)
...+|...++|++|....++.
T Consensus 78 lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 334677888999888877653
No 378
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=84.65 E-value=0.46 Score=52.23 Aligned_cols=18 Identities=44% Similarity=0.418 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCChhHHHH
Q 000162 526 RSTFILGRSGTGKTTILT 543 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVII 543 (1987)
...+|||.||+||||.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 367899999999999973
No 379
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.30 E-value=0.74 Score=52.10 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=29.1
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++++-|++||.. ...+++.+++|||||.+.++-+.
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l 88 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 88 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHH
Confidence 489999999887 67899999999999998643333
No 380
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.23 E-value=0.38 Score=58.24 Aligned_cols=18 Identities=44% Similarity=0.791 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|.|||||||++
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999996
No 381
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.20 E-value=0.46 Score=54.78 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|+|.|||||||+.
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999996
No 382
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=84.12 E-value=0.51 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
-+.++|+|.+|+||||++ +++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 357899999999999998 55554
No 383
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.10 E-value=0.74 Score=51.69 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=30.4
Q ss_pred cCcc-cCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 510 LPFE-VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 510 ~~I~-l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+|+ +++-|++||.. ...+++.++.|||||.+.++-+.
T Consensus 42 ~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l 83 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL 83 (230)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3454 89999999987 56899999999999998643333
No 384
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=84.01 E-value=0.68 Score=63.56 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=36.3
Q ss_pred hhccccccccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHH
Q 000162 501 SDRDGRELDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTM 544 (1987)
Q Consensus 501 ~~~~~~e~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIi 544 (1987)
.-+......++|++++.|++||.. ...++|.|+.|+|||++..+
T Consensus 27 ~l~~~~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~ 73 (997)
T 4a4z_A 27 ELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEY 73 (997)
T ss_dssp HHCSSCSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHH
T ss_pred hhhHhHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHH
Confidence 334445578899999999999988 67899999999999998633
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.95 E-value=0.57 Score=58.19 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=23.9
Q ss_pred cCHHHHHhhcc-----CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 514 VTDEQLEMILF-----PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 514 l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+++.+.++++. .+.++|+|++|+||||++ ++...
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34445544432 568999999999999998 55544
No 386
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.83 E-value=0.45 Score=60.49 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|+|||||||++
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 468999999999999996
No 387
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.83 E-value=0.74 Score=52.66 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=29.5
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++++-|++||.. ...+++.+++|||||++.++-+.
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il 102 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 102 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHH
Confidence 789999999887 67899999999999998743333
No 388
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=83.82 E-value=0.49 Score=52.54 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...+.|+|+||+||||++ |..++
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 347789999999999998 54554
No 389
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=83.81 E-value=0.71 Score=55.70 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=29.6
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++.+-|++||.. ...++|.+++|||||++.++-++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHH
Confidence 499999999988 66899999999999998744444
No 390
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.73 E-value=0.43 Score=56.39 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=12.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++++|+|||||||++
T Consensus 49 ~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVA 65 (324)
T ss_dssp SEEEECSSTTSSHHHHH
T ss_pred eEEEeeCcCCCCHHHHH
Confidence 34455555999999996
No 391
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=83.69 E-value=3 Score=38.00 Aligned_cols=59 Identities=19% Similarity=0.347 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.+...+..|...|++++|+++| ++|+++.. .....+...|.++...|++++|.+.|.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~------~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYY------QKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHH------HHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566777888888999988888 55555421 11344566777777777777777666544
No 392
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.62 E-value=0.64 Score=54.24 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|.|||||||++
T Consensus 43 ~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 34999999999999997
No 393
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=83.53 E-value=0.61 Score=53.79 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=30.3
Q ss_pred Ccc-cCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 511 PFE-VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 511 ~I~-l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
+|+ +++-|++||.. ...+++.|+.|||||++.++-++
T Consensus 73 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l 113 (262)
T 3ly5_A 73 GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAV 113 (262)
T ss_dssp TCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHH
Confidence 344 89999999987 66899999999999999744444
No 394
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=83.44 E-value=0.58 Score=52.04 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=30.2
Q ss_pred cccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 512 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 512 I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.++++-|++||.. ...+++.+++|||||.+.++-++
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l 63 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM 63 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH
Confidence 4689999999987 67899999999999998644444
No 395
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.42 E-value=0.4 Score=56.60 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=12.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+.|||++|+||||++
T Consensus 6 ~iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVK 22 (290)
T ss_dssp CEEEEESCC---CCTHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999998
No 396
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=83.33 E-value=1.3 Score=55.51 Aligned_cols=97 Identities=18% Similarity=0.083 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000162 840 SSPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAK 919 (1987)
Q Consensus 840 stpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk 919 (1987)
.++.-|..+|..+...|+|++|..+|.+|=... |.. ...+...|..|.+.|++++|.+
T Consensus 38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------------p~~-~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELD---------------------KKY-IKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------------------TTC-HHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------CCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 468899999999999999999999999764321 111 1235567888889999999999
Q ss_pred HHHHhCCHHHHHHHHHHhcChhHHHHHHHH--HHHcCCHHHHHHHHHhc
Q 000162 920 CFYDLGEYERAGKIYEERCGKPELEKAGEC--FFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 920 ~y~kaGdyekA~eLy~e~~~~~ll~~aAe~--fE~agqy~kAAeLYeKa 966 (1987)
+| ++|+++..+ ....+...+.+ +...|+|++|.++|.+.
T Consensus 96 ~~------~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 96 DY------ETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HH------HHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HH------HHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 98 666665321 12333444444 55666666666666644
No 397
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=83.22 E-value=7.2 Score=35.35 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000162 841 SPEEWKSRGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSAAKC 920 (1987)
Q Consensus 841 tpeeWkklA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkAAk~ 920 (1987)
.+..|..+|..+...++|+.|..+|.++=...- .+ ...+...+..|...|++++|+++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------------------~~----~~~~~~l~~~~~~~~~~~~A~~~ 65 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------------------NN----AEAWYNLGNAYYKQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------------------CC----HHHHHHHHHHHHHHhhHHHHHHH
Confidence 456789999999999999999999997543100 00 12345667788888888888888
Q ss_pred H
Q 000162 921 F 921 (1987)
Q Consensus 921 y 921 (1987)
|
T Consensus 66 ~ 66 (91)
T 1na3_A 66 Y 66 (91)
T ss_dssp H
T ss_pred H
Confidence 8
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.22 E-value=0.54 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...++|+|+||+||||++ +.+.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 347889999999999997 44444
No 399
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=83.10 E-value=0.54 Score=59.12 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+..+|+|.|||||||++
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 567899999999999997
No 400
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=83.03 E-value=6 Score=40.62 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=59.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 000162 848 RGIKLFYENNYEMATICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEA----IGKADSAAKCFYD 923 (1987)
Q Consensus 848 lA~~l~~~g~ye~A~k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~----~G~~dkAAk~y~k 923 (1987)
+|..+...+.++.|.++|.+|-+... ...+...+.+|.. .+++++|.++|
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~------------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~-- 84 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNS------------------------GNGCRFLGDFYENGKYVKKDLRKAAQYY-- 84 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTC------------------------HHHHHHHHHHHHHCSSSCCCHHHHHHHH--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCC------------------------HHHHHHHHHHHHcCCCCCccHHHHHHHH--
Confidence 88888888888889999998754211 1123456667776 56788888887
Q ss_pred hCCHHHHHHHHHHhcChhHHHHHHHHHHH----cCCHHHHHHHHHhc
Q 000162 924 LGEYERAGKIYEERCGKPELEKAGECFFL----AGQYKHAAEVYARG 966 (1987)
Q Consensus 924 aGdyekA~eLy~e~~~~~ll~~aAe~fE~----agqy~kAAeLYeKa 966 (1987)
++|++. +....+...|..|.. .+++++|.+.|.++
T Consensus 85 ----~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 85 ----SKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp ----HHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ----HHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 444432 334556778888888 78888888888876
No 401
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=82.95 E-value=2.5 Score=39.98 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.+...|..|...|++++|+++| ++|+++... ....+...|.++...|+|++|.+.|.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~------~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCY------DQLITAQPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHH------HHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------HHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3556677788888888888888 666665221 2345667788888888888887777665
No 402
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.81 E-value=0.46 Score=59.35 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999997
No 403
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.72 E-value=0.47 Score=59.39 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++.+++.|+|||||||++
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999998
No 404
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=82.69 E-value=3.5 Score=51.35 Aligned_cols=50 Identities=6% Similarity=-0.063 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHHhcCh------hHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 911 IGKADSAAKCFYDLGEYERAGKIYEERCGK------PELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 911 ~G~~dkAAk~y~kaGdyekA~eLy~e~~~~------~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.|++++|..+| ++|.++.++.-+. ..+..+|..|...|+|++|.++|.++
T Consensus 311 ~g~~~eA~~~~------~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 311 YKSPSELLEIC------ELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp TSCHHHHHHHH------HHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHH------HHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 34555555555 4455544433221 22555666666666666666665554
No 405
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=82.62 E-value=0.43 Score=55.79 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..++|+|.||+||||++
T Consensus 3 ~~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999997
No 406
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.57 E-value=0.8 Score=54.88 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=31.2
Q ss_pred cCcc-cCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 510 LPFE-VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 510 ~~I~-l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+|+ +.+-|++||.. ...++|.+++|||||++.++-+.
T Consensus 26 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 3455 99999999987 66899999999999998744444
No 407
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=82.51 E-value=0.61 Score=53.13 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHH
Q 000162 526 RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVIIikl~ 547 (1987)
...+|||.||+||||.++-.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4778889999999999843333
No 408
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.37 E-value=0.5 Score=58.88 Aligned_cols=18 Identities=44% Similarity=0.907 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.-+++.|+||||||+++
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 566999999999999996
No 409
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=82.32 E-value=0.66 Score=51.48 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+.|+|+||+||||+.
T Consensus 4 ~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 4 INIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999997
No 410
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.31 E-value=0.49 Score=57.76 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.|||||||++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999997
No 411
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.18 E-value=0.61 Score=57.96 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCChhHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI 542 (1987)
.+.-+++.|+||||||+++
T Consensus 215 ~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCSEEEEESSTTTTHHHHH
T ss_pred CCCCCceECCCCchHHHHH
Confidence 3667999999999999995
No 412
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.13 E-value=0.51 Score=58.84 Aligned_cols=19 Identities=37% Similarity=0.725 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCChhHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI 542 (1987)
.+.-+++.|+||||||+++
T Consensus 214 ~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCCeeEEECcCCCCHHHHH
Confidence 3667999999999999995
No 413
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=82.07 E-value=0.67 Score=51.24 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 23 G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 458899999999999998
No 414
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=82.04 E-value=0.7 Score=53.62 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=28.4
Q ss_pred cccCHHHHHhhcc---CCcEEEEcCCCCChhHHHH
Q 000162 512 FEVTDEQLEMILF---PRSTFILGRSGTGKTTILT 543 (1987)
Q Consensus 512 I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVII 543 (1987)
+++.+-|++||.. .+..+|.+++|||||.+++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQA 146 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHH
Confidence 6899999999997 5678999999999999983
No 415
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.92 E-value=0.7 Score=55.32 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+...+++|.|||||||++
T Consensus 24 ~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALI 41 (334)
T ss_dssp CSEEEEECCTTSCHHHHH
T ss_pred ceeEEEECCCCchHHHHH
Confidence 445899999999999997
No 416
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.85 E-value=0.53 Score=58.75 Aligned_cols=18 Identities=39% Similarity=0.802 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.-+++.|+||||||+++
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 667999999999999995
No 417
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=81.82 E-value=0.66 Score=52.91 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+-|+|++|+||||++
T Consensus 27 iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6779999999999997
No 418
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=81.70 E-value=0.95 Score=54.04 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=30.2
Q ss_pred cccCHHHHHhhcc---C--CcEEEEcCCCCChhHHHHHHHH
Q 000162 512 FEVTDEQLEMILF---P--RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 512 I~l~~eQk~AI~~---~--~~~iItGgPGTGKTTVIIikl~ 547 (1987)
-++++-|++||.. . ..++|.+++|||||++.++-++
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3789999999988 3 7999999999999998744444
No 419
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=81.70 E-value=0.88 Score=55.14 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=30.8
Q ss_pred Ccc-cCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 511 PFE-VTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 511 ~I~-l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
+|+ +++-|++||.. ...++|.+++|||||.+.++-++
T Consensus 56 g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 56 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHH
Confidence 454 89999999987 56899999999999998754444
No 420
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=81.67 E-value=0.67 Score=52.46 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+.|+|+||+||||+.
T Consensus 17 ~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CEEEEECSSCSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36889999999999997
No 421
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=81.43 E-value=0.7 Score=49.73 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++..+|+|..|+||||++
T Consensus 26 ~g~~~i~G~NGsGKStll 43 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIG 43 (182)
T ss_dssp SSEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 679999999999999998
No 422
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.30 E-value=0.56 Score=59.22 Aligned_cols=18 Identities=39% Similarity=0.824 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|+|||||||++
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999996
No 423
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=81.30 E-value=0.62 Score=60.85 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=27.1
Q ss_pred ccCHHHHHhhcc-----CCcEEEEcCCCCChhHHH
Q 000162 513 EVTDEQLEMILF-----PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 513 ~l~~eQk~AI~~-----~~~~iItGgPGTGKTTVI 542 (1987)
.+|.+|.+||+. .+..+|||++|+||||.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~l 209 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALA 209 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHH
Confidence 578899999876 678999999999999998
No 424
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=81.26 E-value=0.83 Score=57.12 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHHhh
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLFQN 549 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~~~ 549 (1987)
+.+++++|.||+||||++ +...+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 568899999999999999 6555543
No 425
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=80.98 E-value=0.7 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..+++|+|++|+||||++ +++.+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999998 54444
No 426
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.73 E-value=0.6 Score=52.40 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|.|+|||||||.+
T Consensus 30 G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CeEEEEEeCCCCCHHHHH
Confidence 458999999999999998
No 427
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.73 E-value=0.63 Score=51.30 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 20 G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 458899999999999998
No 428
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=80.72 E-value=0.61 Score=52.29 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 23 G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458899999999999997
No 429
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=80.69 E-value=0.61 Score=59.06 Aligned_cols=19 Identities=47% Similarity=0.739 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCChhHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI 542 (1987)
.+..++|+|+||||||+++
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3667999999999999996
No 430
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=80.63 E-value=1.1 Score=55.60 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=33.1
Q ss_pred cccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 508 LDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 508 ~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
...++++.+.|++||.. .+..+|.|..|+|||.+.+.-+.
T Consensus 88 ~~~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~ 130 (472)
T 2fwr_A 88 FDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN 130 (472)
T ss_dssp CCCCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHH
Confidence 34578999999999987 56799999999999999854444
No 431
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=80.59 E-value=0.81 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...+.|+|++|+||||++ |..++
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999998 44444
No 432
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=80.44 E-value=0.85 Score=55.64 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=30.4
Q ss_pred cCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHH
Q 000162 510 LPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMK 545 (1987)
Q Consensus 510 ~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIik 545 (1987)
+++++++-|++||.. ...+++.++.|||||++.++-
T Consensus 18 ~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 18 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp HSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHH
Confidence 467899999999987 568999999999999966333
No 433
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.41 E-value=0.85 Score=52.76 Aligned_cols=18 Identities=44% Similarity=0.732 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.||+||||+.
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 458999999999999996
No 434
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=80.38 E-value=0.79 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCCChhHHH--HHHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..+.+.|+|++|+||||++ +..++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3568999999999999998 55555
No 435
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=80.27 E-value=0.69 Score=53.16 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+.|+|++|+||||++
T Consensus 28 ~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLC 44 (252)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47889999999999997
No 436
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=80.08 E-value=0.66 Score=50.00 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+.|+|.||+||||.+
T Consensus 10 ei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 47889999999999996
No 437
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=80.04 E-value=0.52 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCChhHHH--HHHHHh
Q 000162 526 RSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
+.+.|+|.+|+||||++ |++++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45789999999999999 777774
No 438
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.93 E-value=1.2 Score=54.04 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=28.9
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKL 546 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl 546 (1987)
++++.|++||.. ...++|.+++|||||++.++-+
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~ 73 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 73 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHH
Confidence 789999999887 6689999999999999763333
No 439
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=79.64 E-value=1.4 Score=58.18 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=31.6
Q ss_pred cCc-ccCHHHHHhhcc----CCcEEEEcCCCCChhHHHHHHHH
Q 000162 510 LPF-EVTDEQLEMILF----PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 510 ~~I-~l~~eQk~AI~~----~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+| ++.+-|.+|+.. ...++|.|+.|||||++..+-++
T Consensus 19 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il 61 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV 61 (720)
T ss_dssp TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHH
Confidence 356 899999999886 77999999999999999844444
No 440
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=79.43 E-value=0.81 Score=52.76 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.+.|||+||||||||.
T Consensus 3 ~i~ltG~~~sGK~tv~ 18 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTA 18 (241)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999998
No 441
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.42 E-value=0.86 Score=55.44 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCCChhHHH--HHHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..+.++|+|++|+||||++ ++...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3679999999999999998 55555
No 442
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=79.09 E-value=0.89 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+..+.|+|++|+||||++ |.+++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 447789999999999998 55555
No 443
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.06 E-value=0.87 Score=58.38 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+.++|+|+|||||||++ |.+..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999998 55554
No 444
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=79.03 E-value=1.3 Score=53.34 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=29.6
Q ss_pred ccCHHHHHhhcc---C--CcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---P--RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~--~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++++.|++||.. . ..++|.+++|||||++.++-++
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~ 86 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 86 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHH
Confidence 689999999987 3 7999999999999999744444
No 445
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=79.03 E-value=0.85 Score=55.72 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=21.2
Q ss_pred hccCCcEEEEcCCCCChhHHH--HHHHH
Q 000162 522 ILFPRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 522 I~~~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
+...+.+.|+|++|+||||++ +...+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344668999999999999998 66655
No 446
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.83 E-value=0.77 Score=51.39 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...+.|+|+||+||||++
T Consensus 24 G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TSEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 458999999999999998
No 447
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=78.82 E-value=1 Score=51.66 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+-.+.|+|+||+||||+.
T Consensus 9 ~~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 447899999999999998
No 448
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=78.77 E-value=0.038 Score=68.77 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHh
Q 000162 945 KAGECFFLAGQYKHAAEVYARGNFFSECLAVCSR 978 (1987)
Q Consensus 945 ~aAe~fE~agqy~kAAeLYeKaGd~~kAIemy~k 978 (1987)
+.....|++..|.++.=+|.+..+|+.|+.....
T Consensus 296 KviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~ 329 (624)
T 3lvg_A 296 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 329 (624)
T ss_dssp TTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTS
T ss_pred HHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHh
Confidence 4667778899999999999999999999875543
No 449
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=78.58 E-value=0.92 Score=53.80 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
..+-|+|++|+||||++
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 47889999999999997
No 450
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=78.51 E-value=4 Score=39.59 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.+...|..|...|++++|+++| ++|+++... ....+...|.++...|++++|.+.|.++
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~------~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHL------RAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHH------HHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556778888889999999888 566655211 1344667788888888888887776544
No 451
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.51 E-value=1.2e+02 Score=36.22 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhcC--CHHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 000162 940 KPELEKAGECFFLAGQYKHAAEVYARGN--FFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFL 1017 (1987)
Q Consensus 940 ~~ll~~aAe~fE~agqy~kAAeLYeKaG--d~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~l 1017 (1987)
..+..-+|..|.+.|++.+|..+|..+. +.+..++|.. +|.+.... +. ......|+
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~-------------~w~~~~~~--~~-------~~e~dlf~ 191 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW-------------DWLCQVDD--IE-------DSTVAEFF 191 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH-------------HHHHHTTC--CC-------HHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH-------------HHHHhcCC--CC-------cchHHHHH
Confidence 3455566666666666666666666443 2444444433 33332100 00 01122377
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 000162 1018 QSCALHYYQLNDKKSMMKFVKAF 1040 (1987)
Q Consensus 1018 e~cA~~ylklgD~~~Am~~vk~~ 1040 (1987)
..+...|+..++.+.|..++..|
T Consensus 192 ~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 192 SRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH
Confidence 88899999999999998877754
No 452
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.47 E-value=0.93 Score=60.34 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.|||||||++
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 568999999999999997
No 453
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=78.46 E-value=1.2 Score=53.76 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=29.5
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
.+++-|++||.. ...++|.++.|||||++.++-++
T Consensus 62 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 99 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL 99 (414)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHH
T ss_pred CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHH
Confidence 689999999987 66899999999999999744444
No 454
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=78.18 E-value=4.7 Score=37.75 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChh-HHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 904 AANIFEAIGKADSAAKCFYDLGEYERAGKIYEERCGKP-ELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 904 AAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~~~~-ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.|..|...|++++|+++| ++|+++.. .... .+...|.++...|+|++|.+.|.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~------~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 6 TIKELINQGDIENALQAL------EEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHTCHHHHHHHH------HHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH------HHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666 44444311 1124 5667788888888888888777665
No 455
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=78.14 E-value=2 Score=42.15 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc-----CCH---HHHHHHHHhcCChHHHHHHHHHhh
Q 000162 942 ELEKAGECFFLAGQYKHAAEVYARG-----NFF---SECLAVCSRGELFDIGLQYINYWK 993 (1987)
Q Consensus 942 ll~~aAe~fE~agqy~kAAeLYeKa-----Gd~---~kAIemy~kak~wd~AlrLi~qy~ 993 (1987)
.+...|.++...|+|++|.+.|.++ ++. -....++...+++++|+..+++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566788888888888888888776 111 222335667777777777765443
No 456
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=78.09 E-value=0.77 Score=55.63 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.9
Q ss_pred CCcEEE--EcCCCCChhHHH
Q 000162 525 PRSTFI--LGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iI--tGgPGTGKTTVI 542 (1987)
.+.++| +|.|||||||++
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 457888 999999999997
No 457
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=77.97 E-value=1 Score=56.27 Aligned_cols=18 Identities=39% Similarity=0.864 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++.+++.|.|||||||++
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999997
No 458
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=77.85 E-value=1.2 Score=49.28 Aligned_cols=21 Identities=33% Similarity=0.724 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.+.|+|.+|+||||++ |..++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 5789999999999998 55555
No 459
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=77.83 E-value=0.9 Score=56.66 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHHh
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLFQ 548 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~~ 548 (1987)
+.+++++|.||+||||++ +...+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468899999999999998 555553
No 460
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.78 E-value=0.78 Score=57.50 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=17.2
Q ss_pred ccCCcEEEEcCCCCChhHHH
Q 000162 523 LFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 523 ~~~~~~iItGgPGTGKTTVI 542 (1987)
..+.-+++.|+||||||+++
T Consensus 241 ~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHH
Confidence 33678999999999999985
No 461
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=77.55 E-value=1.2 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.1
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
.++|.|.||+||||++ +.+.+
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999998 44444
No 462
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=77.48 E-value=6 Score=42.74 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHhcChhHHHHHHHHHHHcC-----------CHHHHHHHHHhc
Q 000162 913 KADSAAKCFYDLGEYERAGKIYEERCGKPELEKAGECFFLAG-----------QYKHAAEVYARG 966 (1987)
Q Consensus 913 ~~dkAAk~y~kaGdyekA~eLy~e~~~~~ll~~aAe~fE~ag-----------qy~kAAeLYeKa 966 (1987)
.+++|+.+| ++|+++--+ ....+...|..|...| +|++|.++|.++
T Consensus 61 ~~~eAi~~l------e~AL~ldP~--~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA 117 (158)
T 1zu2_A 61 MIQEAITKF------EEALLIDPK--KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA 117 (158)
T ss_dssp HHHHHHHHH------HHHHHHCTT--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHhCcC--cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence 356677776 666666111 1234556666666553 666666666554
No 463
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=77.40 E-value=0.92 Score=50.94 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...+.|+|+||+||||++
T Consensus 30 G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CcEEEEEeCCCCCHHHHH
Confidence 568999999999999998
No 464
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=77.31 E-value=1.1 Score=56.15 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=30.1
Q ss_pred CcccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHH
Q 000162 511 PFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTM 544 (1987)
Q Consensus 511 ~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIi 544 (1987)
++++++.|++||.. ....+|.|..|+|||.+.+.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~ 147 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQAL 147 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH
Confidence 56999999999998 66899999999999999833
No 465
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=77.11 E-value=1.1 Score=52.41 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||.+
T Consensus 35 G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CeEEEEEeCCCCCHHHHH
Confidence 448899999999999998
No 466
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=77.04 E-value=1.1 Score=50.79 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|++|+||||++
T Consensus 16 G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 348899999999999997
No 467
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=76.92 E-value=67 Score=42.24 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHHHHhcCHHHHH-HHHHHhcccchhHHHHHhhhHHhhhhhhcCChHHHHHHHHHHHHHHHHcCCHHHH
Q 000162 839 ASSPEEWKSRGIKLFYENNYEMAT-ICFEKAKDTYWEGRSKATGLKAASDHIRSSNPLEANVILREAANIFEAIGKADSA 917 (1987)
Q Consensus 839 ~stpeeWkklA~~l~~~g~ye~A~-k~F~rAgd~~la~la~A~~l~~aA~~l~s~~~~ea~~~y~eAAelYe~~G~~dkA 917 (1987)
...|+.|...|+.+..+++.+.|. +.|.+|=.. + |. ....+...+.+.++.|++++|
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-----~----------------P~-s~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-----I----------------PN-SAVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-----C----------------TT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----C----------------CC-CHHHHHHHHHHHHHhCCHHHH
Confidence 568999999999999999998886 888765220 0 00 012345666777777777777
Q ss_pred HHHHH
Q 000162 918 AKCFY 922 (1987)
Q Consensus 918 Ak~y~ 922 (1987)
-++|.
T Consensus 398 R~iye 402 (679)
T 4e6h_A 398 ETTIL 402 (679)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77763
No 468
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.78 E-value=1.1 Score=58.18 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCCChhHHH
Q 000162 524 FPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 524 ~~~~~iItGgPGTGKTTVI 542 (1987)
....++|+|.|||||||++
T Consensus 59 ~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHH
Confidence 3669999999999999996
No 469
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=76.64 E-value=1.1 Score=53.56 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=29.8
Q ss_pred ccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 513 EVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 513 ~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
++.+-|++||.. .+.++|.+++|||||.+.++-++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~ 80 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL 80 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH
Confidence 789999999988 67899999999999998644444
No 470
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.63 E-value=1.2 Score=53.01 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...+.|+|++|+||||++ |..++
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 447889999999999998 66665
No 471
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=76.59 E-value=1.7 Score=54.50 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=30.2
Q ss_pred CcccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHH
Q 000162 511 PFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTM 544 (1987)
Q Consensus 511 ~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIi 544 (1987)
+|++++-|.+||.. ...++|.++.|+|||.+.++
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~ 38 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLL 38 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHH
Confidence 58899999999988 67899999999999998743
No 472
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=76.39 E-value=1.6 Score=59.96 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=33.4
Q ss_pred ccccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHH
Q 000162 507 ELDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTM 544 (1987)
Q Consensus 507 e~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIi 544 (1987)
...++|++++-|++||.. ...++|.++.|+|||++..+
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~l 120 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEY 120 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHH
Confidence 456789999999999988 67899999999999999733
No 473
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=76.37 E-value=1.2 Score=49.21 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=19.5
Q ss_pred hccCCcEEEEcCCCCChhHHH--HHHHH
Q 000162 522 ILFPRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 522 I~~~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
|....++.|.|++|+||||++ |..++
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 444568899999999999998 54554
No 474
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=76.31 E-value=0.97 Score=57.39 Aligned_cols=18 Identities=33% Similarity=0.807 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+.-++|+|+|||||||++
T Consensus 64 p~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345999999999999997
No 475
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.26 E-value=1.3 Score=56.33 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=17.1
Q ss_pred ccCCcEEEEcCCCCChhHHH
Q 000162 523 LFPRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 523 ~~~~~~iItGgPGTGKTTVI 542 (1987)
.....++|+|++|+||||++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHH
T ss_pred hCCCEEEEECCCCCCHHHHH
Confidence 33557999999999999996
No 476
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.22 E-value=0.97 Score=50.06 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...+.|+|+||+||||++
T Consensus 25 G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458999999999999998
No 477
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=76.16 E-value=51 Score=44.88 Aligned_cols=233 Identities=13% Similarity=0.104 Sum_probs=118.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHH--HHHHhcChhHHHHHHHHHHHc--------CC--------------H
Q 000162 901 LREAANIFEAIGKADSAAKCFYDLGEYERAGK--IYEERCGKPELEKAGECFFLA--------GQ--------------Y 956 (1987)
Q Consensus 901 y~eAAelYe~~G~~dkAAk~y~kaGdyekA~e--Ly~e~~~~~ll~~aAe~fE~a--------gq--------------y 956 (1987)
..-|.+.|...|.|+.|.++...+|+.....+ -|. +.+.-+|.+.|.+. +. .
T Consensus 73 alvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv----~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv 148 (963)
T 4ady_A 73 ALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFV----ETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIF 148 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHH----HHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHH
T ss_pred HHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHH----HHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHH
Confidence 34567788888888888888888776321100 000 11222333333222 11 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000162 957 KHAAEVYARGNFFSECLAVCSRGELFDIGLQYINYWKQHVDTDVGLVRRSKEINKVEQDFLQSCALHYYQLNDKKSMMKF 1036 (1987)
Q Consensus 957 ~kAAeLYeKaGd~~kAIemy~kak~wd~AlrLi~qy~~~~e~e~~~~~ra~~a~~~a~~~le~cA~~ylklgD~~~Am~~ 1036 (1987)
+.=.+...+.|.+..|+.+..+.+..|...+++.+.....+. . -+.-.-.|+-.|+.++..-.+++
T Consensus 149 ~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~--~-------n~~rvclYlls~v~~lv~p~~fr----- 214 (963)
T 4ady_A 149 ERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDST--S-------ENVKIINYLLTLAITTVTNSKFR----- 214 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CH--H-------HHHHHHHHHHHHHHHTCCCHHHH-----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhcccccc--c-------cHHHHHHHHHHHhhccCCChHHH-----
Confidence 112223445688888888888888888777777432111100 0 11111124445554443321111
Q ss_pred HHHhccHHHHHHHHhhcCCHHHHHHHHHHhC--CHHHHHHHHHHcCCHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhh
Q 000162 1037 VKAFHSMDLMRNFLKSKSCFDELLVLEEEAG--NFMDAANIARLTGDILLTADLLQK---AGNFKEACNLTLNYVLSNSL 1111 (1987)
Q Consensus 1037 vk~~~s~d~aa~fL~k~~~~dEaiell~kaG--~f~EA~~iAkq~Gd~l~Aae~L~k---Ag~fdeA~rL~l~~~~~~~L 1111 (1987)
.+ .+.-++++|.+.. +|-+|.+++.+-++....++.|.+ .++..-|.++ -|.++.+
T Consensus 215 ----------~~------vLr~l~~Iy~k~~~~dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQi--AFdL~~~- 275 (963)
T 4ady_A 215 ----------SS------ILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQI--AFDLVSS- 275 (963)
T ss_dssp ----------HH------HHHHHHHHHHHSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHH--HHHHHHH-
T ss_pred ----------HH------HHHHHHHHHHhCCchhHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHH--HHHHhcc-
Confidence 12 2334666676666 777888888888888888888776 4555555554 2333331
Q ss_pred cCCCCCCCCchhhhhHHHHHHHHHHHhhhccccchhhhhhhhcccccCcchHHHHHHHHhhhccCCcceeehhhhhHhhh
Q 000162 1112 WSPGSKGWPLKQFTEKKELFEKAKSLAKSNSNQFYEFVCTEASILSNDESDLFIMNQQLNASKRHQSICGETLSARKILD 1191 (1987)
Q Consensus 1112 W~~~~~g~p~k~f~~k~~ll~~a~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1987)
++ -.|+++ + .+..... . +.--..+|||++.++ +++..|....++. ++....+| .
T Consensus 276 -~~-------Q~fL~~--v-~~~l~~~---e-----~~~kL~~ILsg~~~~--~Lyl~FL~~~n~~----d~~~l~~~-K 329 (963)
T 4ady_A 276 -AS-------QQLLEI--L-VTELTAQ---G-----YDPALLNILSGLPTC--DYYNTFLLNNKNI----DIGLLNKS-K 329 (963)
T ss_dssp -SC-------HHHHHH--H-HHHHHHT---T-----CCHHHHHHTTSHHHH--HHHHHHHHHHCCC----CHHHHHHH-H
T ss_pred -cc-------hHHHHH--H-HHhcccc---c-----hhHHHHHHhCCCChH--HHHHHHHHhcccc----chhhHHHH-H
Confidence 00 144432 1 1111111 0 122568899997653 4566777754433 44444444 5
Q ss_pred hcccc
Q 000162 1192 CHLKT 1196 (1987)
Q Consensus 1192 ~~~~~ 1196 (1987)
.||..
T Consensus 330 ~~ld~ 334 (963)
T 4ady_A 330 SSLDG 334 (963)
T ss_dssp HHSCT
T ss_pred hhhcc
Confidence 66653
No 478
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=76.03 E-value=1.1 Score=52.70 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+.++|+|.+|+||||++
T Consensus 31 ~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 479999999999999996
No 479
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=75.89 E-value=1.2 Score=52.93 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
..++.|+|.||+||||++ +...+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 457889999999999998 55555
No 480
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.89 E-value=1.1 Score=49.55 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
+++|+|||||||||.+
T Consensus 1 ~ilV~Gg~~SGKS~~A 16 (180)
T 1c9k_A 1 MILVTGGARSGKSRHA 16 (180)
T ss_dssp CEEEEECTTSSHHHHH
T ss_pred CEEEECCCCCcHHHHH
Confidence 3789999999999996
No 481
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=75.70 E-value=1.1 Score=59.71 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=32.7
Q ss_pred cccCcccCHHHHHhhcc--C-------CcEEEEcCCCCChhHHHHHHHH
Q 000162 508 LDLPFEVTDEQLEMILF--P-------RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 508 ~d~~I~l~~eQk~AI~~--~-------~~~iItGgPGTGKTTVIIikl~ 547 (1987)
..+||++++.|++||.. . ...+|.|..|||||.+.++-++
T Consensus 363 ~~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 363 KSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 34678999999999987 1 3789999999999999854444
No 482
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=75.52 E-value=1.5 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCChhHHH--HHHHH
Q 000162 525 PRSTFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
...++|.|+||+||||++ +.+.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999998 44444
No 483
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=75.44 E-value=1.8 Score=60.15 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=35.0
Q ss_pred ccccCcccCHHHHHhhcc---CCcEEEEcCCCCChhHHHHHHHH
Q 000162 507 ELDLPFEVTDEQLEMILF---PRSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 507 e~d~~I~l~~eQk~AI~~---~~~~iItGgPGTGKTTVIIikl~ 547 (1987)
....++++++-|++||.. ...++|.|..|+|||++..+-++
T Consensus 178 ~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 178 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHH
Confidence 467789999999999988 67899999999999999844444
No 484
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=75.41 E-value=0.87 Score=54.14 Aligned_cols=18 Identities=17% Similarity=0.026 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
.+..+++|.|||||||++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 18 GISILINGEDLSYPREVS 35 (305)
T ss_dssp SEEEEEECSSSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357999999999999996
No 485
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=75.40 E-value=2 Score=50.67 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=29.7
Q ss_pred cccCHHHHHhhcc---C--CcEEEEcCCCCChhHHHHHHHH
Q 000162 512 FEVTDEQLEMILF---P--RSTFILGRSGTGKTTILTMKLF 547 (1987)
Q Consensus 512 I~l~~eQk~AI~~---~--~~~iItGgPGTGKTTVIIikl~ 547 (1987)
-++++-|++||.. . ..+++.++.|||||.+.++-++
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l 153 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHH
Confidence 3689999999977 3 6999999999999998654444
No 486
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=75.31 E-value=1.1 Score=53.50 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||.+
T Consensus 68 G~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFA 85 (315)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CcEEEEEeCCCCCHHHHH
Confidence 448999999999999998
No 487
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=75.27 E-value=1.4 Score=54.00 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...+.|+|+|||||||++
T Consensus 169 ~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 558999999999999997
No 488
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=75.19 E-value=1.4 Score=50.45 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
-.+-|+|+||+||||+.
T Consensus 9 ~~~~~~G~pGsGKsT~a 25 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQA 25 (230)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cceeeECCCCCCHHHHH
Confidence 35679999999999997
No 489
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=75.16 E-value=1.1 Score=53.91 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+|||||||++
T Consensus 123 gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp SEEEEEECSCSSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 446799999999999998
No 490
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=75.10 E-value=1.3 Score=58.76 Aligned_cols=18 Identities=39% Similarity=0.719 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|.|||||||++
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 567899999999999997
No 491
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=75.03 E-value=1.5 Score=49.15 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=20.1
Q ss_pred HHHHhhcc---CCcEEEEcCCCCChhHHH
Q 000162 517 EQLEMILF---PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 517 eQk~AI~~---~~~~iItGgPGTGKTTVI 542 (1987)
.|+.+++. ...+.|+|++|+||||++
T Consensus 11 g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 11 GQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred hHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34445544 558889999999999997
No 492
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=74.97 E-value=1.1 Score=52.81 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCChhHHH
Q 000162 526 RSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 526 ~~~iItGgPGTGKTTVI 542 (1987)
+.++|+|.||+||||++
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999996
No 493
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=74.74 E-value=5.1 Score=49.77 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=8.5
Q ss_pred ceEEEEeeeeecc
Q 000162 372 GFYIISTTDIVKD 384 (1987)
Q Consensus 372 ~l~liws~dI~~~ 384 (1987)
|.+|+=+.||...
T Consensus 16 GR~l~Atr~i~~G 28 (429)
T 3qwp_A 16 GNGLRAVTPLRPG 28 (429)
T ss_dssp SEEEEESSCBCTT
T ss_pred CCeEEeCCCCCCC
Confidence 4667667776655
No 494
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=74.66 E-value=1.4 Score=52.88 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=17.3
Q ss_pred cEEEEcCCCCChhHHH--HHHHH
Q 000162 527 STFILGRSGTGKTTIL--TMKLF 547 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI--Iikl~ 547 (1987)
++-|+|++|+||||++ |..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999998 44444
No 495
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=74.62 E-value=11 Score=36.78 Aligned_cols=61 Identities=11% Similarity=-0.009 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhc-----ChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 000162 900 ILREAANIFEAIGKADSAAKCFYDLGEYERAGKIYEERC-----GKPELEKAGECFFLAGQYKHAAEVYARG 966 (1987)
Q Consensus 900 ~y~eAAelYe~~G~~dkAAk~y~kaGdyekA~eLy~e~~-----~~~ll~~aAe~fE~agqy~kAAeLYeKa 966 (1987)
.+.+-|.+|.+.|+|..|+.-| ++|.+.+.... ....+...|.++.+.|++++|..+|.++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~------~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWM------EQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHH------HHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4667888899999999999988 66776664321 1345677788887777777777776665
No 496
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.37 E-value=1.2 Score=55.12 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
+..++|+|.||+||||++
T Consensus 258 ~~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 468899999999999995
No 497
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=74.26 E-value=1.3 Score=49.81 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
...++|+|+||+||||++
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 346899999999999997
No 498
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=74.20 E-value=1.5 Score=46.49 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCChhHHH
Q 000162 525 PRSTFILGRSGTGKTTIL 542 (1987)
Q Consensus 525 ~~~~iItGgPGTGKTTVI 542 (1987)
++..+|+|+.|+||||++
T Consensus 23 ~g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLL 40 (149)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 579999999999999998
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=74.17 E-value=1.2 Score=50.40 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHH
Q 000162 527 STFILGRSGTGKTTIL 542 (1987)
Q Consensus 527 ~~iItGgPGTGKTTVI 542 (1987)
.++|.|++|+||||++
T Consensus 4 ~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFV 19 (241)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5789999999999997
No 500
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=74.16 E-value=15 Score=43.85 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhc-------CCH---HHHHHHHHhcCChHHHHHHHHHhhhc
Q 000162 943 LEKAGECFFLAGQYKHAAEVYARG-------NFF---SECLAVCSRGELFDIGLQYINYWKQH 995 (1987)
Q Consensus 943 l~~aAe~fE~agqy~kAAeLYeKa-------Gd~---~kAIemy~kak~wd~AlrLi~qy~~~ 995 (1987)
+.-+|..++..|++++|.+.+.++ +.. -.++.++.+.++.+.|.+++++..+.
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 346788888889999999998888 333 34566788888888888888666543
Done!