BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000165
         (1978 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QTO|A Chain A, 1.5 A Crystal Structure Of A Bleomycin Resistance
            Determinant From Bleomycin-Producing Streptomyces
            Verticillus
 pdb|1JIE|A Chain A, Crystal Structure Of Bleomycin-Binding Protein From
            Bleomycin-Producing Streptomyces Verticillus Complexed
            With Metal-Free Bleomycin
 pdb|1JIE|B Chain B, Crystal Structure Of Bleomycin-Binding Protein From
            Bleomycin-Producing Streptomyces Verticillus Complexed
            With Metal-Free Bleomycin
 pdb|1JIF|A Chain A, Crystal Structure Of Bleomycin-Binding Protein From
            Bleomycin-Producing Streptomyces Verticillus Complexed
            With Copper(Ii)-Bleomycin
 pdb|1JIF|B Chain B, Crystal Structure Of Bleomycin-Binding Protein From
            Bleomycin-Producing Streptomyces Verticillus Complexed
            With Copper(Ii)-Bleomycin
          Length = 122

 Score = 32.7 bits (73), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 1022 VVKVLQDIFELVTNDMMTNGSRVLDSLN-SSQLVERDFA--------FCLQRTRHQLFAD 1072
            +VK L  +  L   D+  N S  +D+L       +RDFA          + RT HQ+ AD
Sbjct: 1    MVKFLGAVPVLTAVDVPANVSFWVDTLGFEKDFGDRDFAGVRRGDIRLHISRTEHQIVAD 60

Query: 1073 KNSIHFPLPDNDSLNEQIKR 1092
              S    + D D+L+E+  R
Sbjct: 61   NTSAWIEVTDPDALHEEWAR 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,929,101
Number of Sequences: 62578
Number of extensions: 2298141
Number of successful extensions: 5926
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5923
Number of HSP's gapped (non-prelim): 14
length of query: 1978
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1865
effective length of database: 7,902,023
effective search space: 14737272895
effective search space used: 14737272895
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)