Query 000165
Match_columns 1978
No_of_seqs 276 out of 422
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 21:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 99.9 2.7E-25 9.3E-30 242.2 8.0 131 70-210 5-140 (183)
2 2rkk_A Vacuolar protein sortin 99.7 5.3E-17 1.8E-21 174.1 10.0 118 78-205 1-140 (168)
3 4hg6_A Cellulose synthase subu 60.5 2.9 9.9E-05 55.1 1.9 133 1351-1495 224-361 (802)
4 1ich_A TNF-1, tumor necrosis f 12.9 1.2E+02 0.004 31.3 3.2 76 1162-1237 11-102 (112)
5 1t8h_A YLMD protein sequence h 9.1 1.2E+02 0.004 35.5 1.9 24 1457-1489 28-52 (277)
6 4hkr_A Calcium release-activat 7.0 5.3E+02 0.018 29.2 5.7 37 1917-1953 108-145 (214)
7 2lch_A Protein OR38; structura 6.7 1.6E+03 0.055 21.9 9.6 79 952-1033 19-97 (113)
8 3kyj_A CHEA3, putative histidi 6.6 1.9E+03 0.066 22.7 10.1 76 952-1030 24-99 (144)
9 1l6x_B Minimized B-domain of p 6.4 96 0.0033 25.8 -0.3 23 1372-1394 1-23 (34)
10 2ysr_A DEP domain-containing p 6.3 2.1E+02 0.0072 28.8 2.0 30 867-896 9-38 (105)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=99.91 E-value=2.7e-25 Score=242.21 Aligned_cols=131 Identities=23% Similarity=0.309 Sum_probs=110.9
Q ss_pred CCCCCCchhhhhhHHHHHHhhhhcccCCCchhhHhHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhcccccccccc
Q 000165 70 FDSERLPAFLASGIHKFLLVANLLESEEPRVAYLCRFQAFEIAHRMDRNSTARGVRQFKTSLLQRLEQDEYTTLDRRKEE 149 (1978)
Q Consensus 70 ~dse~VP~sL~~~I~piLrvA~Eie~~dP~VAYlCr~yA~e~a~klDp~S~grgVrQFkt~Ll~~LE~~~~~~~~~~i~~ 149 (1978)
++.+.||++||+ |.||||+|+|+|++||+||||||+||+|+++++|+ +++||+||+++||++||++|++...... .
T Consensus 5 ~~l~~vP~~LK~-I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~--~~~e~~~f~~~LLd~LE~~K~~~~~~da-i 80 (183)
T 2lxl_A 5 APLPPLPAQFKS-IQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSKLMDQLEALKKQLGDNEA-I 80 (183)
T ss_dssp CCCCCCCGGGSS-SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCS--CCTTHHHHHHHHHHHHHHHHHHHCSCHH-H
T ss_pred CCCCCCChhHHh-HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhccc--CChhHHHHHHHHHHHHHHHHHhccchhH-H
Confidence 588899999999 99999999999999999999999999999999999 5799999999999999999887522111 2
Q ss_pred chHHHHHHHHHHHHHHHhhccCCCCccchh-----HHHHHHHHHHHHHHHHHHHHhhccCChhhhh
Q 000165 150 TDTRELRRVYHAYKDYIFRNSGALNLEGSE-----RERLINARRIASVLYEVLKTVTNAVDPQALA 210 (1978)
Q Consensus 150 ~D~~elq~fy~~Y~~K~~~~~~a~~~d~~d-----~~~~~K~f~tAsvL~dVL~~~~~~v~~Ei~~ 210 (1978)
+|-...|.|+++|+.|.|. +| |++| +++++|+|+||++|||||++|++ +++|+.+
T Consensus 81 ~~~~~~~ayve~fAlklF~--~A---d~~dRa~~~t~~~~k~F~aA~~f~eVL~~fg~-l~~e~~~ 140 (183)
T 2lxl_A 81 TQEIVGCAHLENYALKMFL--YA---DNEDRAGRFHKNMIKSFYTASLLIDVITVFGE-LTDENVK 140 (183)
T ss_dssp HCHHHHHHHHHHHHHHHHH--HH---HHHHHTTCCCHHHHHHHHHHHHHHHHHHTTSC-CCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH--HH---HHHhhccchhHHHHHHHHHHHHHHHHHHHHCC-CCHHHHH
Confidence 3333368888888888887 66 5555 57799999999999999999976 7766543
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.3e-17 Score=174.10 Aligned_cols=118 Identities=10% Similarity=0.066 Sum_probs=97.1
Q ss_pred hhhhhHHHHHHhhhhcccC-CCchhhHhHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhcccccc-c---------
Q 000165 78 FLASGIHKFLLVANLLESE-EPRVAYLCRFQAFEIAHRMDRNSTARGVRQFKTSLLQRLEQDEYTTLDR-R--------- 146 (1978)
Q Consensus 78 sL~~~I~piLrvA~Eie~~-dP~VAYlCr~yA~e~a~klDp~S~grgVrQFkt~Ll~~LE~~~~~~~~~-~--------- 146 (1978)
|+.++|.|+|++|+|++++ ||.||||||+||+|.+++++. +++++++|.+.||++||+.|++..++ .
T Consensus 1 ~~~~~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~~~--~s~e~~~~l~~LlD~LE~~K~~~~~~e~~~~~~~~~~ 78 (168)
T 2rkk_A 1 SMASNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEED--RSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLH 78 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCTT--CCHHHHHHHHHHHHHHHHHHHTTC-----------CT
T ss_pred CCcchHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHhccccccccccccchh
Confidence 3444589999999999999 999999999999999999977 66999999999999999999886222 1
Q ss_pred -----cccchHHHHHHHHHHHHHHHhhccCCCCccchh-----HHHHHHHHH-HHHHHHHHHHHhhccCC
Q 000165 147 -----KEETDTRELRRVYHAYKDYIFRNSGALNLEGSE-----RERLINARR-IASVLYEVLKTVTNAVD 205 (1978)
Q Consensus 147 -----i~~~D~~elq~fy~~Y~~K~~~~~~a~~~d~~d-----~~~~~K~f~-tAsvL~dVL~~~~~~v~ 205 (1978)
+ ++|+. .+.|.++|+.|.|. .+ |++| +++++|.|+ ||..+++||+.|++ .+
T Consensus 79 ~~~~~i-~d~~~-a~a~ve~FAlklF~--~A---d~~drag~~~k~~~k~fy~ta~~F~avl~~fg~-~~ 140 (168)
T 2rkk_A 79 VMNTLI-HDQEK-AKIYMLNFTMSLYN--EK---LKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKE-NI 140 (168)
T ss_dssp TTTHHH-HCHHH-HHHHHHHHHHHHHH--HH---HHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTGG-GS
T ss_pred hhhhhc-ccHHH-HHHHHHHHHHHHHH--HH---HHHHhcCCcchhHHHHHHHHHHHHHHHHHHhCC-cc
Confidence 1 23443 78888888888887 55 5544 789999999 79999999999977 55
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=60.54 E-value=2.9 Score=55.14 Aligned_cols=133 Identities=16% Similarity=0.129 Sum_probs=81.5
Q ss_pred CCCCccccchhhhccccchhcccccccchHHHHHhhhhhHHHHHhhcCCCCceEecccceeeccc-----chhhcccccc
Q 000165 1351 EGKPENQNHAIIFTRGEALQTIDMNQDNYLEEALKMRNLLQEFLQNHGRRPPTILGLREHIFTGS-----VSSLAWFMSY 1425 (1978)
Q Consensus 1351 eGKpeNQNhAiiF~RGE~lQtIDmNQDnYleE~lKmrnlL~ef~~~~g~~~~~IlG~RE~IFt~~-----vssLa~f~a~ 1425 (1978)
.||+.|-|+++=-++||++-++|.+-- .-.++|+ .+++.|+++. .+.+++.+-++..++ .+...... .
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~~-~~pd~L~--~lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~~-~ 296 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADHV-PSRDFLA--RTVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRCP-P 296 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTEE-ECTTHHH--HHHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTSC-C
T ss_pred CcchHHHHHHHHhcCCCEEEEECCCCC-cChHHHH--HHHHHHhcCC---CeEEEeccEEEeCCchHhhhhhHHhhhh-H
Confidence 489999999999999999999998531 1133333 5566776543 355666555444433 22222222 2
Q ss_pred chhhHHHHHHHhhcCccceeeeccCCcccccccccccCcccccccccccchhhhcccccccccceeeeee
Q 000165 1426 QETSFVTIGQRLLANPLRVRFHYGHPDVFDRVFHITRGGISKASKTINLSEDVFAGFNCTLRRGCITYHE 1495 (1978)
Q Consensus 1426 qE~~F~Tl~qR~la~Pl~vr~HYGHPD~fd~~f~~trGGiSKAsk~i~lsEDIfaG~n~~lRgG~Ith~E 1495 (1978)
.+..|-...++.... .+...--|+-=++.|.....-||... -.++||..-++-...+|.++.++.
T Consensus 297 ~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~ 361 (802)
T 4hg6_A 297 ENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYID 361 (802)
T ss_dssp TTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECC
T ss_pred HHHHHHHHHHhhHhh-cCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCCeEEEec
Confidence 233444444544432 22333345555566666666688764 356899999999999998887764
No 4
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=12.87 E-value=1.2e+02 Score=31.33 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=50.6
Q ss_pred CcccHHHHHHhhCc-hhhhhHHHHhcCCCcc------cc---cccchhHHhhhhhhccc------cchhhccchhhcHHH
Q 000165 1162 EEVSIIFYMQKIYP-DEWKNFLERMGCENLD------TL---KDEGKEEELRSWASFRG------QTLSRSVRGMMYYEE 1225 (1978)
Q Consensus 1162 dgvsiL~YLq~iyP-dEW~NFleR~~~~~~~------~~---~~~~~~~elRlWAS~Rg------QTL~RTVrGmMyY~~ 1225 (1978)
+.-.+|+..-...| .+|+.|+.++|+.+.+ +. ..+..-.=||.|----| +||..+.+-|=.-.-
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~~ 90 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGC 90 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccHHH
Confidence 45567777777777 8999999999976411 11 01122335999998866 788888887777777
Q ss_pred HHHHHHhhccCC
Q 000165 1226 ALKLQAFLDMAE 1237 (1978)
Q Consensus 1226 ALkll~~lE~~~ 1237 (1978)
|-+++..++...
T Consensus 91 ae~Ie~~l~~~~ 102 (112)
T 1ich_A 91 LEDIEEALCGPA 102 (112)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHhccc
Confidence 777777766543
No 5
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=9.05 E-value=1.2e+02 Score=35.51 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=15.2
Q ss_pred cccccc-Ccccccccccccchhhhcccccccccc
Q 000165 1457 VFHITR-GGISKASKTINLSEDVFAGFNCTLRRG 1489 (1978)
Q Consensus 1457 ~f~~tr-GGiSKAsk~i~lsEDIfaG~n~~lRgG 1489 (1978)
.+++|| ||||++ .|+++|.-+.-|
T Consensus 28 ~~fttR~GGvS~~---------py~slNlg~~vg 52 (277)
T 1t8h_A 28 AGLTTKHGGESKG---------PFASLNMGLHVG 52 (277)
T ss_dssp EEEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred EEEEcCCCCccCC---------cccceeccCCCC
Confidence 345666 887776 577887655433
No 6
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=6.96 E-value=5.3e+02 Score=29.22 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhhHHHHHH-HHHHHhhhhhhhHHHH
Q 000165 1917 WDFVKVLAKAYDYGMGVVLFT-PIAVLAWLPIISAFQT 1953 (1978)
Q Consensus 1917 w~~v~~la~~~d~~~g~~~~~-pi~~ls~~p~~~~~Qt 1953 (1978)
+...-++|+.+--+.|+++|. -|++++|.-|...-|+
T Consensus 108 ~~~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~~ 145 (214)
T 4hkr_A 108 LHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRR 145 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeecCCcH
Confidence 567889999999999999885 5788899988876554
No 7
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=6.73 E-value=1.6e+03 Score=21.90 Aligned_cols=79 Identities=5% Similarity=0.108 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHH
Q 000165 952 YESLKCILEILVVGDLEKRVISNIVNEIEESIGRSNLLDNFKMGELLALQAKCIELVELLVEGNETHHDKVVKVLQDIFE 1031 (1978)
Q Consensus 952 y~~~~~iL~~ll~~~~~~~ii~~i~~~i~~si~~~~ll~~f~~~~L~~~~~~~~~Ll~~L~~~~~~~~~~vv~~l~~~~e 1031 (1978)
.+.+...|..+-.+..+...+..+++.+-..--. -..+.+..+..+..++..+++.+.++.......++..+..-++
T Consensus 19 l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGs---a~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~~l~~~l~~~~d 95 (113)
T 2lch_A 19 IQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEI---TETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLIDKVKKKLD 95 (113)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH---HHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHH---HHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3334444444433444555566666544322111 1235678888888888888888877664444555555555554
Q ss_pred HH
Q 000165 1032 LV 1033 (1978)
Q Consensus 1032 ~v 1033 (1978)
.+
T Consensus 96 ~l 97 (113)
T 2lch_A 96 MV 97 (113)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 8
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=6.61 E-value=1.9e+03 Score=22.75 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHH
Q 000165 952 YESLKCILEILVVGDLEKRVISNIVNEIEESIGRSNLLDNFKMGELLALQAKCIELVELLVEGNETHHDKVVKVLQDIF 1030 (1978)
Q Consensus 952 y~~~~~iL~~ll~~~~~~~ii~~i~~~i~~si~~~~ll~~f~~~~L~~~~~~~~~Ll~~L~~~~~~~~~~vv~~l~~~~ 1030 (1978)
.+.+...|..+-.+..+...+..||+.+-..--.. ..+.+..+..+..++..++..+.+........++..|..-+
T Consensus 24 L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA---~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l~dlll~~~ 99 (144)
T 3kyj_A 24 LDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNS---RVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIVEILLFAS 99 (144)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHH---HhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 33344444444455567777888877654322111 23567788888888889998888765333334444444333
No 9
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=6.39 E-value=96 Score=25.82 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=19.5
Q ss_pred ccccccchHHHHHhhhhhHHHHH
Q 000165 1372 IDMNQDNYLEEALKMRNLLQEFL 1394 (1978)
Q Consensus 1372 IDmNQDnYleE~lKmrnlL~ef~ 1394 (1978)
+|+-|.|-|=|.|+|.||-+|=.
T Consensus 1 ~~~~qQnaFYevLh~~nLtEeQr 23 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEEQR 23 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHH
Confidence 46779999999999999987754
No 10
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=6.28 E-value=2.1e+02 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=24.1
Q ss_pred hhhHhHHHHHhhcccccccccccccccccc
Q 000165 867 KFVLVWNQIVNRFRVEDLISNRELDLMTIP 896 (1978)
Q Consensus 867 rFa~~WNeII~s~ReEDLISdrE~dlL~~P 896 (1978)
+-..+||+||..||....|-||...+=.+|
T Consensus 9 ~at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 9 RATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred hHHHHHHHHHHHHHcCCCcceeeeCCEECC
Confidence 445699999999999999999876655555
Done!