Query 000165
Match_columns 1978
No_of_seqs 276 out of 422
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 21:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000165.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000165hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfi1 g.41.3.1 (I:1-49) RBP9 13.0 21 0.0016 29.8 0.2 9 373-381 2-10 (49)
2 d1i5na_ a.24.10.3 (A:) Chemota 8.3 6.7E+02 0.049 22.6 9.5 77 948-1027 10-89 (128)
3 d1xhba2 c.68.1.17 (A:95-422) P 7.9 57 0.0042 34.6 1.4 35 1351-1385 93-130 (328)
4 d1cf7b_ a.4.5.17 (B:) Cell cyc 7.9 3.8E+02 0.028 24.1 6.8 22 121-142 1-22 (82)
5 d1sq5a_ c.37.1.6 (A:) Pantothe 7.7 1.9E+02 0.014 31.5 5.6 50 1379-1440 57-106 (308)
6 d1g8qa_ a.135.1.1 (A:) CD81 ex 7.3 2.2E+02 0.016 25.9 5.0 17 152-168 8-24 (90)
7 d2yrka1 g.37.1.4 (A:8-55) Zinc 5.8 34 0.0025 28.4 -1.5 11 1403-1413 18-28 (48)
8 d1x4la1 g.39.1.3 (A:8-36) Four 5.7 68 0.005 24.0 0.3 8 1660-1667 11-18 (29)
9 d1omza_ c.68.1.15 (A:) Alpha-1 5.4 1.5E+02 0.011 28.3 2.8 57 1351-1413 67-123 (265)
10 d1wlna1 b.26.1.2 (A:8-114) Afa 5.1 1.7E+02 0.012 26.9 2.8 22 1357-1378 52-73 (107)
No 1
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.01 E-value=21 Score=29.80 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=6.4
Q ss_pred cccccchhh
Q 000165 373 ANLRFMPEC 381 (1978)
Q Consensus 373 aNLRFMPEC 381 (1978)
+.+||+|||
T Consensus 2 s~~rFC~eC 10 (49)
T d1twfi1 2 TTFRFCRDC 10 (49)
T ss_dssp CCCCBCSSS
T ss_pred CceecChhc
Confidence 457777777
No 2
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=8.26 E-value=6.7e+02 Score=22.64 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=43.5
Q ss_pred HHHHHHHHHH---HHHHHhcCCchhHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhcCCCchhhhHHH
Q 000165 948 VKECYESLKC---ILEILVVGDLEKRVISNIVNEIEESIGRSNLLDNFKMGELLALQAKCIELVELLVEGNETHHDKVVK 1024 (1978)
Q Consensus 948 v~e~y~~~~~---iL~~ll~~~~~~~ii~~i~~~i~~si~~~~ll~~f~~~~L~~~~~~~~~Ll~~L~~~~~~~~~~vv~ 1024 (1978)
+.|+-+.+.. .|..+-.+..+...+..+++.+-..--.- ..+.+..+-.+..++..+++.+.++.......++.
T Consensus 10 ~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a---~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~~~~~ 86 (128)
T d1i5na_ 10 FDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGA---GTFGFTILQETTHLMENLLDEARRGEMQLNTDIIN 86 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHH---hhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 3444444433 34343344455666777776654332222 23467888888999999999888765332333333
Q ss_pred HHH
Q 000165 1025 VLQ 1027 (1978)
Q Consensus 1025 ~l~ 1027 (1978)
.+.
T Consensus 87 ~l~ 89 (128)
T d1i5na_ 87 LFL 89 (128)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.92 E-value=57 Score=34.60 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=27.1
Q ss_pred CCCCccccchhhhccccchhccccc---ccchHHHHHh
Q 000165 1351 EGKPENQNHAIIFTRGEALQTIDMN---QDNYLEEALK 1385 (1978)
Q Consensus 1351 eGKpeNQNhAiiF~RGE~lQtIDmN---QDnYleE~lK 1385 (1978)
-|.+...|.++--++||+|-.+|.. ..++||+.++
T Consensus 93 ~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~ 130 (328)
T d1xhba2 93 SGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLA 130 (328)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHH
T ss_pred ccchHHHHHHHHhhhcceeeecCcccccChhHHHHHHH
Confidence 3677788999999999999988865 5667766543
No 4
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.89 E-value=3.8e+02 Score=24.09 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHHHHHhhhccc
Q 000165 121 ARGVRQFKTSLLQRLEQDEYTT 142 (1978)
Q Consensus 121 grgVrQFkt~Ll~~LE~~~~~~ 142 (1978)
|+|.|+|-......+++...++
T Consensus 1 gkgLr~~S~kVcekV~~k~~Tt 22 (82)
T d1cf7b_ 1 GKGLRHFSMKVCEKVQRKGTTS 22 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHSEEC
T ss_pred CccHHHHHHHHHHHHHHhCcCc
Confidence 7899999999999888877654
No 5
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=7.66 E-value=1.9e+02 Score=31.48 Aligned_cols=50 Identities=30% Similarity=0.555 Sum_probs=37.1
Q ss_pred hHHHHHhhhhhHHHHHhhcCCCCceEecccceeecccchhhccccccchhhHHHHHHHhhcC
Q 000165 1379 YLEEALKMRNLLQEFLQNHGRRPPTILGLREHIFTGSVSSLAWFMSYQETSFVTIGQRLLAN 1440 (1978)
Q Consensus 1379 YleE~lKmrnlL~ef~~~~g~~~~~IlG~RE~IFt~~vssLa~f~a~qE~~F~Tl~qR~la~ 1440 (1978)
|.+++.+.....++|....+.+.|-||| .+|++|| || +||....+..|+.
T Consensus 57 ~~~~~~~~~~~~~~fl~~~~~k~P~iIG-----IaG~sgS------GK-STla~~L~~lL~~ 106 (308)
T d1sq5a_ 57 YISSNLRRQAVLEQFLGTNGQRIPYIIS-----IAGSVAV------GK-STTARVLQALLSR 106 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCC-CCCCEEEE-----EEECTTS------SH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEE-----EeCCCCC------CC-cHHHHHHHHHHhh
Confidence 4578888888899998777778889998 6666664 44 6777777777763
No 6
>d1g8qa_ a.135.1.1 (A:) CD81 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.32 E-value=2.2e+02 Score=25.87 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 000165 152 TRELRRVYHAYKDYIFR 168 (1978)
Q Consensus 152 ~~elq~fy~~Y~~K~~~ 168 (1978)
+.+++.||.+-|.++..
T Consensus 8 ~~ev~~FY~~~Y~~y~~ 24 (90)
T d1g8qa_ 8 AKDVKQFYDQALQQAVV 24 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 56799999999998876
No 7
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.77 E-value=34 Score=28.36 Aligned_cols=11 Identities=45% Similarity=0.948 Sum_probs=7.9
Q ss_pred eEecccceeec
Q 000165 1403 TILGLREHIFT 1413 (1978)
Q Consensus 1403 ~IlG~RE~IFt 1413 (1978)
+=+-+|+||||
T Consensus 18 ~~~SvrdHiFs 28 (48)
T d2yrka1 18 ARLSIRDHIFS 28 (48)
T ss_dssp SSSCHHHHHTS
T ss_pred eecchHhhhhh
Confidence 44556888888
No 8
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.72 E-value=68 Score=23.95 Aligned_cols=8 Identities=50% Similarity=0.870 Sum_probs=6.4
Q ss_pred ccCceeec
Q 000165 1660 HGGAKYRP 1667 (1978)
Q Consensus 1660 ~GGAkYra 1667 (1978)
+||+||++
T Consensus 11 ~gg~kyis 18 (29)
T d1x4la1 11 LGGTKYIS 18 (29)
T ss_dssp SSSCSCEE
T ss_pred cCCceEEE
Confidence 68888875
No 9
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.35 E-value=1.5e+02 Score=28.31 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=37.2
Q ss_pred CCCCccccchhhhccccchhcccccccchHHHHHhhhhhHHHHHhhcCCCCceEecccceeec
Q 000165 1351 EGKPENQNHAIIFTRGEALQTIDMNQDNYLEEALKMRNLLQEFLQNHGRRPPTILGLREHIFT 1413 (1978)
Q Consensus 1351 eGKpeNQNhAiiF~RGE~lQtIDmNQDnYleE~lKmrnlL~ef~~~~g~~~~~IlG~RE~IFt 1413 (1978)
.|+..+-|+|+-..+||++=.+|.. |=+-+++|+ .+++.+++.. ...+.|.+-+...
T Consensus 67 ~g~~~a~n~~~~~a~ge~i~~lD~D-~~~~~~~l~--~l~~~~~~~~---~~~v~~~~~~~~~ 123 (265)
T d1omza_ 67 ANKMRNRLQVFPEVETNAVLMVDDD-TLISAQDLV--FAFSIWQQFP---DQIIGFVPRKHVS 123 (265)
T ss_dssp SCCGGGGGSCCTTCCSSEEEEECTT-EEECHHHHH--HHHHHHTTST---TSEEESCEEEEEE
T ss_pred CCchhhhhhhHHhCCcCEEEEeCcc-cCCCHHHHH--HHHHHHHhCC---Ccceecccccccc
Confidence 4888899999999999999999964 223344454 5666776442 2344444444443
No 10
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.07 E-value=1.7e+02 Score=26.92 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=18.8
Q ss_pred ccchhhhccccchhcccccccc
Q 000165 1357 QNHAIIFTRGEALQTIDMNQDN 1378 (1978)
Q Consensus 1357 QNhAiiF~RGE~lQtIDmNQDn 1378 (1978)
..||.|-..++.+.+.|.+..|
T Consensus 52 ~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 52 PHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SSCEEEEESSSCEEEEESCSSS
T ss_pred eeEEEEEEcccccEEecCCCCc
Confidence 4699999999999999988775
Done!