Query 000166
Match_columns 1974
No_of_seqs 264 out of 418
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 21:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1820 Microtubule-associated 100.0 3.7E-69 8.1E-74 692.3 33.7 770 603-1390 7-793 (815)
2 KOG1820 Microtubule-associated 100.0 2.3E-56 4.9E-61 574.5 41.0 755 19-818 13-793 (815)
3 PF12348 CLASP_N: CLASP N term 99.8 3.4E-20 7.4E-25 214.0 19.8 210 283-496 6-227 (228)
4 PF12348 CLASP_N: CLASP N term 99.7 1.9E-16 4.1E-21 183.0 15.6 204 853-1062 7-226 (228)
5 KOG2171 Karyopherin (importin) 99.4 2.1E-08 4.5E-13 132.2 56.2 394 57-487 123-562 (1075)
6 KOG2171 Karyopherin (importin) 99.4 8.8E-07 1.9E-11 117.3 69.5 516 289-977 8-561 (1075)
7 KOG1824 TATA-binding protein-i 99.4 2E-07 4.4E-12 119.4 55.7 879 16-1042 10-1096(1233)
8 KOG2956 CLIP-associating prote 99.0 1.6E-08 3.5E-13 122.5 20.0 370 128-503 102-506 (516)
9 KOG2023 Nuclear transport rece 99.0 1.1E-05 2.4E-10 101.0 43.5 350 61-488 136-518 (885)
10 PLN03200 cellulose synthase-in 98.7 0.0011 2.4E-08 95.1 56.6 608 290-1041 194-860 (2102)
11 PLN03200 cellulose synthase-in 98.7 0.0089 1.9E-07 86.3 64.7 796 277-1388 7-887 (2102)
12 KOG1242 Protein containing ada 98.6 5.8E-07 1.3E-11 113.2 17.9 305 138-486 27-336 (569)
13 KOG2023 Nuclear transport rece 98.5 3.1E-05 6.6E-10 97.3 28.8 550 303-981 127-706 (885)
14 KOG0213 Splicing factor 3b, su 98.5 0.00067 1.5E-08 86.1 40.0 569 336-1039 452-1063(1172)
15 KOG0212 Uncharacterized conser 98.4 0.0003 6.5E-09 87.7 31.9 279 894-1295 166-454 (675)
16 PF01602 Adaptin_N: Adaptin N 98.4 0.0014 3E-08 85.4 39.8 378 291-783 10-401 (526)
17 PRK13800 putative oxidoreducta 98.3 2.9E-05 6.3E-10 107.2 23.6 242 718-1039 622-865 (897)
18 KOG1242 Protein containing ada 98.3 0.00016 3.4E-09 91.9 27.1 310 124-481 130-451 (569)
19 KOG0915 Uncharacterized conser 98.3 0.0001 2.2E-09 99.7 25.5 514 404-1046 819-1368(1702)
20 PRK13800 putative oxidoreducta 98.2 0.00012 2.6E-09 101.3 24.3 260 695-1037 634-895 (897)
21 KOG0213 Splicing factor 3b, su 98.1 0.035 7.6E-07 71.4 41.3 337 323-798 797-1152(1172)
22 KOG1824 TATA-binding protein-i 98.1 0.13 2.7E-06 68.4 73.9 1063 289-1678 9-1208(1233)
23 PTZ00429 beta-adaptin; Provisi 98.0 0.0067 1.5E-07 81.6 35.4 348 57-469 110-541 (746)
24 KOG0211 Protein phosphatase 2A 97.9 0.014 3E-07 78.2 35.6 533 323-1048 119-671 (759)
25 PF01602 Adaptin_N: Adaptin N 97.9 0.0029 6.2E-08 82.5 29.4 389 290-792 47-448 (526)
26 COG5181 HSH155 U2 snRNP splice 97.9 0.051 1.1E-06 68.8 37.4 351 321-810 600-972 (975)
27 KOG0212 Uncharacterized conser 97.8 0.0022 4.7E-08 80.4 23.9 172 855-1031 2-186 (675)
28 KOG2933 Uncharacterized conser 97.8 0.00012 2.6E-09 86.2 10.8 178 290-469 93-272 (334)
29 PRK09687 putative lyase; Provi 97.8 0.0026 5.6E-08 76.8 22.4 252 708-1037 18-278 (280)
30 KOG1241 Karyopherin (importin) 97.7 0.37 8E-06 63.2 41.1 649 52-933 126-820 (859)
31 KOG2956 CLIP-associating prote 97.7 0.004 8.6E-08 77.0 22.3 366 699-1071 81-507 (516)
32 KOG1241 Karyopherin (importin) 97.6 0.58 1.3E-05 61.5 40.5 579 300-1048 145-818 (859)
33 COG5181 HSH155 U2 snRNP splice 97.5 0.044 9.6E-07 69.3 28.6 177 848-1039 687-868 (975)
34 KOG0211 Protein phosphatase 2A 97.5 0.028 6.2E-07 75.3 28.1 382 325-793 237-630 (759)
35 KOG1248 Uncharacterized conser 97.4 1.2 2.7E-05 61.2 46.3 649 314-1057 81-872 (1176)
36 PRK09687 putative lyase; Provi 97.3 0.0022 4.8E-08 77.3 14.0 160 288-472 26-186 (280)
37 PTZ00429 beta-adaptin; Provisi 97.2 0.2 4.4E-06 67.9 31.9 177 855-1042 107-286 (746)
38 PF05004 IFRD: Interferon-rela 97.0 0.03 6.5E-07 68.6 19.4 189 289-477 47-260 (309)
39 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0086 1.9E-07 61.0 9.8 92 344-474 5-96 (97)
40 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.011 2.3E-07 60.4 10.3 54 915-968 6-59 (97)
41 KOG1248 Uncharacterized conser 96.7 5.6 0.00012 55.3 40.4 629 318-1054 217-911 (1176)
42 COG5215 KAP95 Karyopherin (imp 96.4 5.3 0.00011 51.4 39.6 151 336-486 189-369 (858)
43 KOG2933 Uncharacterized conser 96.3 0.022 4.8E-07 67.8 10.7 178 857-1037 92-273 (334)
44 PF10508 Proteasom_PSMB: Prote 96.2 0.66 1.4E-05 60.9 25.3 103 371-475 43-149 (503)
45 PF02985 HEAT: HEAT repeat; I 96.1 0.0074 1.6E-07 48.4 4.0 30 446-475 1-30 (31)
46 PF00790 VHS: VHS domain; Int 95.7 0.03 6.5E-07 60.8 7.9 113 860-981 16-134 (140)
47 PF10508 Proteasom_PSMB: Prote 95.6 7.9 0.00017 51.1 31.1 389 729-1243 49-465 (503)
48 KOG0915 Uncharacterized conser 95.6 12 0.00025 53.4 32.6 246 722-979 822-1082(1702)
49 KOG4535 HEAT and armadillo rep 95.6 0.24 5.3E-06 61.6 15.5 298 20-361 5-331 (728)
50 cd03568 VHS_STAM VHS domain fa 95.5 0.099 2.1E-06 57.2 11.2 109 862-979 13-124 (144)
51 PF13646 HEAT_2: HEAT repeats; 95.5 0.036 7.8E-07 54.4 7.1 86 1258-1356 1-88 (88)
52 PF13513 HEAT_EZ: HEAT-like re 95.5 0.023 4.9E-07 51.4 5.2 55 417-472 1-55 (55)
53 PF12717 Cnd1: non-SMC mitotic 95.5 0.085 1.8E-06 59.6 10.9 98 380-481 2-99 (178)
54 cd00020 ARM Armadillo/beta-cat 95.5 0.11 2.3E-06 53.3 10.7 107 366-473 7-119 (120)
55 smart00288 VHS Domain present 95.3 0.11 2.5E-06 56.0 10.5 110 862-980 13-126 (133)
56 cd00020 ARM Armadillo/beta-cat 95.1 0.042 9.1E-07 56.3 6.5 108 856-964 10-119 (120)
57 COG1413 FOG: HEAT repeat [Ener 95.1 2.4 5.3E-05 52.3 22.9 261 718-1055 44-318 (335)
58 PF13646 HEAT_2: HEAT repeats; 95.1 0.14 3.1E-06 50.1 9.6 86 368-470 1-88 (88)
59 cd03561 VHS VHS domain family; 94.9 0.12 2.7E-06 55.6 9.3 108 862-978 13-126 (133)
60 cd03569 VHS_Hrs_Vps27p VHS dom 94.6 0.19 4.2E-06 54.8 10.0 111 861-980 16-129 (142)
61 KOG2032 Uncharacterized conser 94.5 0.42 9.2E-06 60.3 13.7 193 858-1053 222-428 (533)
62 PF05004 IFRD: Interferon-rela 94.5 0.33 7.3E-06 59.6 12.9 185 857-1042 47-258 (309)
63 PF12460 MMS19_C: RNAPII trans 94.3 2 4.3E-05 55.2 20.0 187 295-486 200-405 (415)
64 KOG2032 Uncharacterized conser 94.3 0.83 1.8E-05 57.8 15.7 210 289-501 221-443 (533)
65 cd03565 VHS_Tom1 VHS domain fa 94.3 0.29 6.4E-06 53.4 10.6 111 862-981 14-131 (141)
66 PF04118 Dopey_N: Dopey, N-ter 93.9 0.71 1.5E-05 56.6 13.9 164 869-1039 71-252 (307)
67 KOG2259 Uncharacterized conser 93.8 14 0.0003 48.7 25.1 280 128-436 198-515 (823)
68 PF12717 Cnd1: non-SMC mitotic 93.5 1.7 3.6E-05 49.3 15.2 111 339-457 2-113 (178)
69 cd03567 VHS_GGA VHS domain fam 93.5 0.7 1.5E-05 50.4 11.6 98 862-968 14-119 (139)
70 KOG1060 Vesicle coat complex A 93.2 8.4 0.00018 51.4 22.0 343 904-1364 43-425 (968)
71 KOG1061 Vesicle coat complex A 91.5 35 0.00076 46.1 24.9 151 301-457 137-292 (734)
72 TIGR02270 conserved hypothetic 91.5 1.5 3.4E-05 55.9 12.7 119 326-472 87-205 (410)
73 cd00197 VHS_ENTH_ANTH VHS, ENT 91.5 0.81 1.8E-05 47.9 8.7 75 890-964 32-114 (115)
74 KOG1062 Vesicle coat complex A 91.3 9.3 0.0002 51.3 19.3 292 326-752 108-419 (866)
75 KOG1087 Cytosolic sorting prot 91.0 0.57 1.2E-05 60.1 8.3 101 860-969 12-116 (470)
76 TIGR02270 conserved hypothetic 90.8 4.4 9.5E-05 51.9 15.8 145 857-1039 121-265 (410)
77 KOG1058 Vesicle coat complex C 90.8 9.2 0.0002 50.9 18.3 133 848-1006 312-447 (948)
78 KOG2025 Chromosome condensatio 90.7 36 0.00078 45.5 23.3 253 117-502 26-292 (892)
79 PF13251 DUF4042: Domain of un 90.5 2.1 4.6E-05 48.8 11.2 135 341-476 2-176 (182)
80 KOG0166 Karyopherin (importin) 90.3 3.5 7.5E-05 53.5 14.2 186 289-477 70-269 (514)
81 PF02985 HEAT: HEAT repeat; I 90.3 0.34 7.3E-06 38.9 3.5 30 1014-1043 2-31 (31)
82 PF10274 ParcG: Parkin co-regu 90.1 0.96 2.1E-05 51.3 8.1 122 848-972 34-171 (183)
83 KOG1240 Protein kinase contain 90.1 14 0.00031 51.5 19.9 287 617-981 439-745 (1431)
84 KOG1059 Vesicle coat complex A 89.6 8.7 0.00019 50.9 16.7 184 288-483 147-371 (877)
85 COG5215 KAP95 Karyopherin (imp 89.5 83 0.0018 41.3 36.6 353 364-812 319-692 (858)
86 KOG0392 SNF2 family DNA-depend 89.3 1.7 3.7E-05 59.9 10.7 202 300-503 748-961 (1549)
87 KOG1240 Protein kinase contain 89.3 20 0.00044 50.1 20.3 110 687-799 624-745 (1431)
88 cd00197 VHS_ENTH_ANTH VHS, ENT 88.9 2.3 4.9E-05 44.6 9.4 93 294-394 13-114 (115)
89 KOG1020 Sister chromatid cohes 88.2 1.1E+02 0.0023 44.6 26.3 134 1208-1341 1025-1178(1692)
90 PF13513 HEAT_EZ: HEAT-like re 88.2 0.5 1.1E-05 42.7 3.5 52 911-962 3-54 (55)
91 cd03568 VHS_STAM VHS domain fa 87.7 2.7 5.8E-05 46.2 9.3 96 294-396 13-111 (144)
92 PF12231 Rif1_N: Rap1-interact 87.0 85 0.0018 40.0 23.4 314 609-962 1-349 (372)
93 PF12460 MMS19_C: RNAPII trans 86.6 1E+02 0.0022 39.8 24.2 193 857-1055 193-407 (415)
94 KOG1087 Cytosolic sorting prot 86.4 2.2 4.7E-05 55.1 8.8 97 293-396 13-113 (470)
95 cd03567 VHS_GGA VHS domain fam 86.4 4.8 0.0001 44.1 10.2 96 294-396 14-117 (139)
96 PF14500 MMS19_N: Dos2-interac 86.2 39 0.00085 40.9 18.8 138 608-751 6-157 (262)
97 COG5096 Vesicle coat complex, 86.0 8.4 0.00018 52.3 14.2 61 408-475 97-157 (757)
98 COG1413 FOG: HEAT repeat [Ener 85.7 19 0.00042 44.5 16.6 176 289-500 47-237 (335)
99 KOG1061 Vesicle coat complex A 85.3 46 0.001 45.0 20.0 135 323-466 348-520 (734)
100 PF00790 VHS: VHS domain; Int 85.1 4.5 9.8E-05 44.1 9.4 75 322-396 39-119 (140)
101 smart00288 VHS Domain present 84.8 4.3 9.4E-05 43.9 9.0 96 294-396 13-112 (133)
102 KOG1943 Beta-tubulin folding c 84.6 2E+02 0.0044 40.7 37.9 206 276-488 203-471 (1133)
103 cd03569 VHS_Hrs_Vps27p VHS dom 83.4 5.9 0.00013 43.4 9.4 96 294-396 17-115 (142)
104 cd03561 VHS VHS domain family; 83.3 7.8 0.00017 41.9 10.2 96 294-396 13-113 (133)
105 COG5064 SRP1 Karyopherin (impo 83.1 31 0.00068 42.3 15.6 165 1162-1356 64-268 (526)
106 KOG0166 Karyopherin (importin) 83.0 1.1E+02 0.0025 40.2 21.7 362 855-1267 68-458 (514)
107 PF04118 Dopey_N: Dopey, N-ter 82.4 29 0.00063 43.0 15.7 148 296-481 22-174 (307)
108 PF12074 DUF3554: Domain of un 82.3 32 0.00068 43.0 16.5 155 322-479 19-240 (339)
109 KOG4524 Uncharacterized conser 81.9 2.1E+02 0.0046 40.1 24.1 66 331-396 809-877 (1014)
110 KOG4524 Uncharacterized conser 81.0 1.5E+02 0.0033 41.4 22.3 72 335-406 558-630 (1014)
111 PF12719 Cnd3: Nuclear condens 80.9 16 0.00035 44.8 13.0 125 72-196 3-142 (298)
112 cd03565 VHS_Tom1 VHS domain fa 80.2 6.8 0.00015 42.9 8.4 96 294-396 14-116 (141)
113 KOG2259 Uncharacterized conser 80.0 71 0.0015 42.6 18.1 301 364-750 196-514 (823)
114 KOG2199 Signal transducing ada 79.6 11 0.00023 46.9 10.4 111 862-981 21-134 (462)
115 PF13251 DUF4042: Domain of un 78.1 47 0.001 38.1 14.5 153 26-196 1-173 (182)
116 PF14500 MMS19_N: Dos2-interac 77.5 1.8E+02 0.0038 35.4 20.9 192 289-490 46-253 (262)
117 KOG1058 Vesicle coat complex C 77.4 2.9E+02 0.0063 37.9 23.1 121 1173-1300 320-442 (948)
118 PF11640 TAN: Telomere-length 77.0 13 0.00029 41.2 9.7 83 289-379 8-104 (155)
119 cd03572 ENTH_epsin_related ENT 75.8 8.2 0.00018 41.3 7.2 78 319-396 32-120 (122)
120 PF10274 ParcG: Parkin co-regu 75.4 34 0.00074 39.2 12.3 116 366-481 38-171 (183)
121 KOG1949 Uncharacterized conser 74.9 83 0.0018 42.2 16.7 185 767-1002 182-371 (1005)
122 KOG2160 Armadillo/beta-catenin 74.0 69 0.0015 40.0 15.3 181 863-1047 93-288 (342)
123 PF05536 Neurochondrin: Neuroc 73.8 42 0.00091 44.8 14.6 175 305-481 77-268 (543)
124 KOG0392 SNF2 family DNA-depend 72.9 17 0.00036 51.0 10.5 172 868-1047 748-931 (1549)
125 KOG2025 Chromosome condensatio 72.4 63 0.0014 43.4 14.9 130 1223-1357 54-190 (892)
126 COG5096 Vesicle coat complex, 71.9 82 0.0018 43.3 16.5 166 294-474 28-195 (757)
127 cd03572 ENTH_epsin_related ENT 71.9 18 0.00039 38.9 8.5 75 399-473 34-118 (122)
128 KOG1967 DNA repair/transcripti 71.3 8.3 0.00018 52.4 7.1 107 290-396 914-1025(1030)
129 PF12074 DUF3554: Domain of un 71.2 40 0.00086 42.1 13.0 85 894-981 21-113 (339)
130 KOG1243 Protein kinase [Genera 70.0 13 0.00028 49.5 8.4 173 289-475 258-438 (690)
131 PF12719 Cnd3: Nuclear condens 69.6 58 0.0013 40.0 13.6 127 348-475 6-144 (298)
132 KOG1059 Vesicle coat complex A 69.4 12 0.00026 49.8 7.7 91 380-476 121-212 (877)
133 KOG1077 Vesicle coat complex A 67.2 4.6E+02 0.01 35.8 22.3 345 292-752 81-438 (938)
134 PF10363 DUF2435: Protein of u 67.2 36 0.00079 34.7 9.2 81 405-487 5-85 (92)
135 KOG1525 Sister chromatid cohes 66.0 27 0.00059 50.3 10.8 148 757-966 258-406 (1266)
136 KOG1062 Vesicle coat complex A 65.1 1.6E+02 0.0036 40.3 16.7 211 856-1072 145-418 (866)
137 COG5218 YCG1 Chromosome conden 63.7 1.1E+02 0.0024 40.3 14.2 197 290-501 96-293 (885)
138 PF11640 TAN: Telomere-length 62.1 40 0.00086 37.5 9.3 93 857-949 8-120 (155)
139 KOG4825 Component of synaptic 62.1 39 0.00085 42.6 9.8 162 658-823 454-638 (666)
140 PF12830 Nipped-B_C: Sister ch 61.9 22 0.00047 40.8 7.4 81 1290-1388 7-87 (187)
141 KOG1078 Vesicle coat complex C 61.3 6.1E+02 0.013 35.2 23.6 29 445-473 503-531 (865)
142 PLN03076 ARF guanine nucleotid 60.6 2.2E+02 0.0048 43.3 18.5 181 298-478 1150-1380(1780)
143 KOG1967 DNA repair/transcripti 59.9 17 0.00036 49.7 6.7 122 845-967 898-1026(1030)
144 KOG2149 Uncharacterized conser 59.3 90 0.0019 39.7 12.4 107 333-439 66-177 (393)
145 KOG1243 Protein kinase [Genera 58.2 72 0.0016 43.0 11.8 136 321-482 269-406 (690)
146 PF08506 Cse1: Cse1; InterPro 57.6 78 0.0017 40.3 11.9 52 414-469 319-370 (370)
147 KOG0803 Predicted E3 ubiquitin 57.3 1.3E+02 0.0027 44.1 14.8 188 291-478 47-267 (1312)
148 PF08389 Xpo1: Exportin 1-like 56.8 65 0.0014 34.5 9.8 127 320-469 21-148 (148)
149 KOG4535 HEAT and armadillo rep 55.8 59 0.0013 41.7 9.9 147 610-787 5-178 (728)
150 COG5218 YCG1 Chromosome conden 55.1 1.5E+02 0.0033 39.2 13.4 161 908-1069 104-294 (885)
151 PF10363 DUF2435: Protein of u 54.7 48 0.001 33.9 7.6 76 1293-1368 5-80 (92)
152 PF13001 Ecm29: Proteasome sta 54.5 6.7E+02 0.014 33.4 31.3 115 358-477 15-137 (501)
153 PF12830 Nipped-B_C: Sister ch 54.0 1.2E+02 0.0027 34.7 11.8 113 365-477 7-122 (187)
154 KOG2149 Uncharacterized conser 53.9 34 0.00075 43.2 7.6 112 856-968 61-173 (393)
155 PF10521 DUF2454: Protein of u 53.8 1.3E+02 0.0028 36.8 12.6 137 322-459 116-279 (282)
156 PF12765 Cohesin_HEAT: HEAT re 53.6 13 0.00028 32.4 2.8 26 444-469 17-42 (42)
157 KOG1060 Vesicle coat complex A 53.3 8.1E+02 0.018 34.1 31.2 198 288-502 38-243 (968)
158 PF00514 Arm: Armadillo/beta-c 52.5 20 0.00043 30.5 3.9 29 445-473 12-40 (41)
159 PF06371 Drf_GBD: Diaphanous G 51.9 30 0.00064 39.1 6.3 88 698-786 92-185 (187)
160 PF05536 Neurochondrin: Neuroc 50.8 7.8E+02 0.017 33.2 25.5 79 733-817 114-197 (543)
161 PF12397 U3snoRNP10: U3 small 50.1 49 0.0011 35.0 7.3 83 1290-1375 5-95 (121)
162 KOG2160 Armadillo/beta-catenin 49.7 4E+02 0.0087 33.6 15.6 195 276-480 76-288 (342)
163 KOG2199 Signal transducing ada 49.1 1.4E+02 0.0031 37.7 11.6 114 352-467 32-157 (462)
164 KOG0168 Putative ubiquitin fus 48.6 2.7E+02 0.0059 38.5 14.7 149 323-476 209-366 (1051)
165 KOG1822 Uncharacterized conser 48.6 1.3E+02 0.0027 44.9 12.4 224 189-476 23-250 (2067)
166 PF12765 Cohesin_HEAT: HEAT re 48.5 15 0.00031 32.1 2.4 25 936-960 18-42 (42)
167 PF08167 RIX1: rRNA processing 48.3 93 0.002 35.0 9.5 69 289-357 29-100 (165)
168 KOG0803 Predicted E3 ubiquitin 47.7 1.1E+02 0.0024 44.6 11.9 116 849-965 38-153 (1312)
169 PF11865 DUF3385: Domain of un 46.9 1.6E+02 0.0035 33.1 10.9 146 321-477 6-160 (160)
170 PF04826 Arm_2: Armadillo-like 46.9 2.1E+02 0.0045 34.7 12.6 169 291-464 60-252 (254)
171 PF11935 DUF3453: Domain of un 46.7 3.2E+02 0.0068 32.8 14.0 73 334-434 2-74 (239)
172 COG5240 SEC21 Vesicle coat com 46.6 2.3E+02 0.0049 37.6 13.0 119 69-195 410-553 (898)
173 KOG0414 Chromosome condensatio 46.2 1.2E+02 0.0025 43.3 11.2 110 380-502 975-1099(1251)
174 KOG1020 Sister chromatid cohes 45.3 1.6E+02 0.0035 42.9 12.5 113 355-472 805-919 (1692)
175 COG5095 TAF6 Transcription ini 45.3 1.6E+02 0.0034 36.1 10.7 127 936-1071 197-342 (450)
176 PF08167 RIX1: rRNA processing 42.5 1.5E+02 0.0032 33.4 9.9 78 401-478 23-101 (165)
177 PF02854 MIF4G: MIF4G domain; 42.1 5.4E+02 0.012 28.8 15.2 149 316-479 9-161 (209)
178 PF05918 API5: Apoptosis inhib 41.7 4.1E+02 0.0088 35.8 14.9 128 324-456 58-189 (556)
179 PF08623 TIP120: TATA-binding 41.1 2.6E+02 0.0057 31.9 11.4 118 362-499 5-142 (169)
180 COG5095 TAF6 Transcription ini 39.9 1.3E+02 0.0028 36.8 9.0 128 362-502 197-340 (450)
181 KOG2011 Sister chromatid cohes 39.6 4.8E+02 0.01 37.5 15.6 197 296-502 165-380 (1048)
182 KOG0414 Chromosome condensatio 39.0 2E+02 0.0044 41.0 11.8 66 985-1050 371-437 (1251)
183 PF12231 Rif1_N: Rap1-interact 38.8 3.8E+02 0.0082 34.2 13.8 133 909-1041 148-303 (372)
184 KOG4653 Uncharacterized conser 38.4 3.7E+02 0.008 37.5 13.6 140 334-477 736-879 (982)
185 KOG1822 Uncharacterized conser 38.0 2.5E+02 0.0055 42.1 12.8 150 326-478 52-210 (2067)
186 PF05804 KAP: Kinesin-associat 37.4 3.7E+02 0.0079 37.3 13.9 163 309-477 474-652 (708)
187 PRK14954 DNA polymerase III su 37.2 5.5E+02 0.012 35.2 15.5 372 895-1326 190-618 (620)
188 KOG1924 RhoA GTPase effector D 37.1 5.5E+02 0.012 35.4 14.6 30 365-394 334-363 (1102)
189 KOG1077 Vesicle coat complex A 36.9 1.3E+03 0.029 31.8 21.3 249 148-432 168-433 (938)
190 PF08064 UME: UME (NUC010) dom 36.4 2.1E+02 0.0045 30.0 9.1 70 415-487 27-96 (107)
191 PF05804 KAP: Kinesin-associat 36.0 5.1E+02 0.011 36.0 15.0 136 320-458 245-385 (708)
192 PF00531 Death: Death domain; 35.6 1.3E+02 0.0029 29.1 7.3 78 918-1000 3-82 (83)
193 PF11698 V-ATPase_H_C: V-ATPas 35.5 2.4E+02 0.0052 30.4 9.4 80 884-965 33-115 (119)
194 PF11698 V-ATPase_H_C: V-ATPas 35.5 60 0.0013 34.8 5.0 62 721-786 47-113 (119)
195 PRK14950 DNA polymerase III su 35.3 1.3E+03 0.028 31.4 18.7 13 744-756 568-580 (585)
196 PF08506 Cse1: Cse1; InterPro 35.1 1.6E+02 0.0035 37.5 9.7 59 976-1035 310-369 (370)
197 KOG1525 Sister chromatid cohes 35.0 4.7E+02 0.01 38.5 14.9 213 1169-1390 258-490 (1266)
198 PF03224 V-ATPase_H_N: V-ATPas 34.9 9.5E+02 0.02 29.7 16.2 155 289-460 109-274 (312)
199 PF08161 NUC173: NUC173 domain 34.7 1.2E+02 0.0026 35.4 7.8 76 410-486 7-82 (198)
200 KOG1517 Guanine nucleotide bin 34.6 1.2E+02 0.0026 42.6 8.5 67 410-476 606-673 (1387)
201 PF08767 CRM1_C: CRM1 C termin 34.6 2.6E+02 0.0056 35.0 11.2 65 414-478 131-198 (319)
202 KOG2050 Puf family RNA-binding 34.4 6.6E+02 0.014 33.8 14.6 166 321-494 233-412 (652)
203 PF10521 DUF2454: Protein of u 33.3 95 0.0021 38.0 7.1 84 414-501 90-176 (282)
204 KOG1949 Uncharacterized conser 32.4 8.8E+02 0.019 33.4 15.2 199 175-457 181-390 (1005)
205 KOG2137 Protein kinase [Signal 32.3 4.5E+02 0.0097 36.1 13.1 186 290-485 278-469 (700)
206 PF04826 Arm_2: Armadillo-like 31.1 5.7E+02 0.012 31.1 12.9 149 327-479 56-210 (254)
207 KOG2549 Transcription initiati 30.8 1.5E+03 0.032 30.6 16.8 180 602-794 208-421 (576)
208 COG3682 Predicted transcriptio 30.8 59 0.0013 35.0 4.0 42 1641-1705 10-51 (123)
209 cd08318 Death_NMPP84 Death dom 30.6 1.4E+02 0.0031 30.0 6.5 65 918-982 9-75 (86)
210 PF01603 B56: Protein phosphat 30.5 5.5E+02 0.012 33.3 13.5 178 290-467 138-319 (409)
211 PF03224 V-ATPase_H_N: V-ATPas 29.5 2.1E+02 0.0047 35.3 9.4 117 362-481 55-186 (312)
212 KOG2274 Predicted importin 9 [ 29.3 1.9E+03 0.041 31.3 19.9 331 867-1333 424-786 (1005)
213 PF06371 Drf_GBD: Diaphanous G 28.2 73 0.0016 35.9 4.7 90 107-196 90-186 (187)
214 PF13001 Ecm29: Proteasome sta 27.7 3.6E+02 0.0077 35.9 11.4 109 921-1030 7-120 (501)
215 COG5116 RPN2 26S proteasome re 27.7 1.8E+02 0.004 38.2 8.1 145 1203-1384 522-674 (926)
216 PF11864 DUF3384: Domain of un 27.7 6.2E+02 0.014 33.3 13.5 159 653-816 187-356 (464)
217 KOG4825 Component of synaptic 27.2 5.3E+02 0.012 33.3 11.7 180 290-474 398-597 (666)
218 KOG3961 Uncharacterized conser 27.1 1.2E+02 0.0025 35.6 5.7 100 846-948 108-210 (262)
219 PF08045 CDC14: Cell division 26.9 5.8E+02 0.013 31.1 11.8 87 1278-1365 113-209 (257)
220 PF11838 ERAP1_C: ERAP1-like C 26.7 1.2E+03 0.027 28.3 16.6 78 299-379 35-120 (324)
221 KOG1078 Vesicle coat complex C 26.7 2.3E+02 0.005 38.9 9.0 52 141-196 479-531 (865)
222 cd08317 Death_ank Death domain 26.6 2.3E+02 0.005 28.3 7.2 74 918-996 6-82 (84)
223 PF12030 DUF3517: Domain of un 26.4 3E+02 0.0065 34.8 9.7 60 128-197 208-267 (337)
224 PF08161 NUC173: NUC173 domain 25.8 2E+02 0.0043 33.6 7.5 115 912-1027 17-131 (198)
225 PF08389 Xpo1: Exportin 1-like 25.8 1.7E+02 0.0036 31.3 6.7 66 715-783 80-148 (148)
226 cd00256 VATPase_H VATPase_H, r 25.5 1.5E+02 0.0032 38.6 7.0 125 1228-1358 295-423 (429)
227 KOG2753 Uncharacterized conser 25.5 1.5E+03 0.032 28.8 16.6 131 321-474 80-216 (378)
228 cd01670 Death Death Domain: a 25.0 1.3E+02 0.0027 29.1 5.0 64 919-982 2-67 (79)
229 PF03965 Penicillinase_R: Peni 24.7 83 0.0018 33.1 4.0 45 1639-1707 5-49 (115)
230 cd03562 CID CID (CTD-Interacti 24.3 4.8E+02 0.01 27.2 9.6 95 369-465 5-99 (114)
231 PF12783 Sec7_N: Guanine nucle 23.9 3.3E+02 0.0071 30.5 8.7 102 865-966 34-147 (168)
232 KOG0567 HEAT repeat-containing 23.7 3.7E+02 0.0081 32.8 9.2 84 1260-1356 191-276 (289)
233 PF12530 DUF3730: Protein of u 23.5 1.3E+03 0.027 27.6 13.9 128 336-468 95-233 (234)
234 COG5098 Chromosome condensatio 23.3 5E+02 0.011 35.4 10.8 82 932-1049 342-423 (1128)
235 cd08050 TAF6 TATA Binding Prot 23.0 8E+02 0.017 31.1 12.7 116 862-1002 187-319 (343)
236 cd08803 Death_ank3 Death domai 22.8 1.9E+02 0.004 29.3 5.7 75 918-997 6-83 (84)
237 PF11864 DUF3384: Domain of un 22.6 1.9E+03 0.04 29.0 23.1 65 145-211 7-74 (464)
238 PF05918 API5: Apoptosis inhib 21.8 1E+03 0.022 32.2 13.6 146 322-481 24-169 (556)
239 KOG2213 Apoptosis inhibitor 5/ 21.7 1.1E+03 0.024 30.4 12.9 171 617-818 22-202 (460)
240 PF04388 Hamartin: Hamartin pr 21.1 4.4E+02 0.0095 36.4 10.6 99 1256-1362 39-142 (668)
241 cd08306 Death_FADD Fas-associa 20.9 4E+02 0.0086 26.9 7.6 66 918-983 4-72 (86)
242 KOG4199 Uncharacterized conser 20.8 1.6E+03 0.034 28.6 13.7 180 295-483 117-322 (461)
243 KOG4653 Uncharacterized conser 20.6 1.5E+03 0.032 32.1 14.6 181 292-480 734-924 (982)
244 PF08767 CRM1_C: CRM1 C termin 20.4 1E+03 0.023 29.7 12.9 93 342-435 89-197 (319)
245 smart00185 ARM Armadillo/beta- 20.3 1.3E+02 0.0029 24.7 3.6 27 446-472 13-39 (41)
246 smart00005 DEATH DEATH domain, 20.2 3.2E+02 0.0069 26.9 6.9 78 915-997 4-85 (88)
No 1
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-69 Score=692.33 Aligned_cols=770 Identities=26% Similarity=0.300 Sum_probs=642.4
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHHhcCCCCccc
Q 000166 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (1974)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~-~PgwkesNfqV~~k~leil~~la~~~~~fs~~~ 681 (1974)
+.+....+.++.||.|++++..+..+.+..+..+..++.+++.... .++|++.||||+--.+.++..-..+... +...
T Consensus 7 ~~~~~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~~~~-~~~~ 85 (815)
T KOG1820|consen 7 SVGTDSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVNIRD-TKTQ 85 (815)
T ss_pred ccccchhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccccccC-cchh
Confidence 4455555889999999999999999998876666666777776654 3789999999999988888843221111 2222
Q ss_pred hhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000166 682 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1974)
Q Consensus 682 ~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~ 761 (1974)
+-.++ .|+.|.+-...+..+++.+++.....+++..++..+.++++|++..+++.|+...|.+||+.....+.+++
T Consensus 86 ~~~~i----~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~D~nvr~~~~~l~v~ 161 (815)
T KOG1820|consen 86 SLLRI----GKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLADKNVRSEASKLLVE 161 (815)
T ss_pred HHHHH----HHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccccccccchhhcccchh
Confidence 22232 78888898888888899999999999999999999999999999999999998888899998888888888
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCC
Q 000166 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (1974)
Q Consensus 762 ~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~ 841 (1974)
+.+-.|.++.+...|.++..+++++..|.|.....|+.+.+|.+.+....|++++..+....|.++++...+....+.+.
T Consensus 162 i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~ 241 (815)
T KOG1820|consen 162 IYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN 241 (815)
T ss_pred hhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence 88777899999999999999999999999999999999999999999999999998888888888877655543333445
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHH
Q 000166 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (1974)
Q Consensus 842 ~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~ 921 (1974)
-|++||+||+++|++.|.++|.|++||+|+||||.+.++|+++++.++.+.+|++...++.|++|+|.|++++|++||+.
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ 321 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILEL 321 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999875578999889999999999999999999999999999
Q ss_pred HHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000166 922 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1974)
Q Consensus 922 lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l 1001 (1974)
||.+||..|.+|++.++|.++.+|+|+|+.+|++++.|+|+|+++++++.+.++|.++|+++ ||+.|.+++.|+.++|
T Consensus 322 ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 322 IAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGK--NPQIKGECLLLLDRKL 399 (815)
T ss_pred HHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 7999999999999999
Q ss_pred ccCCC---Cc-chhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCC---
Q 000166 1002 TGLSG---FP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074 (1974)
Q Consensus 1002 ~~~~~---~~-~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~--- 1074 (1974)
..+.. .. ....+++.++...+|++.|||++|.++++++|+++|++.+.+.+.++++.- +....++.++..
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~---~~~~~E~~~p~~~~~ 476 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQD---IKPKEEKLKPLLHFL 476 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccch---hhhhhhhcccccccc
Confidence 99873 22 344455558889999999999999999999999999999999999999873 333444444422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHH----hh
Q 000166 1075 VSMGPTSKSSSKVPKSASNGVSKH-----GNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE----RM 1145 (1974)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~----~~ 1145 (1974)
..+.+++++..+.....+...+.. .....++..+|.+.+...+. .. .....+.+.. .+..+++|. ++
T Consensus 477 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~~~r 552 (815)
T KOG1820|consen 477 AAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSS-RK-IPEAAEAPKL--QLSLKEQRVVLGTRR 552 (815)
T ss_pred ccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCcccccccc-cC-Ccchhhcccc--ccccccchhhhhhhh
Confidence 222223322222111111000000 00001111112211111100 00 0011112212 356688886 56
Q ss_pred hhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccccch
Q 000166 1146 VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNT 1225 (1974)
Q Consensus 1146 ~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~ 1225 (1974)
.+.+|++..|..+..+. |...+...+...|||.||+.|.++++.++.....+.++..++.|++++|+++||+++|+
T Consensus 553 ~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~lr~~~~~~ 628 (815)
T KOG1820|consen 553 KVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQDLLLEWLVLRFEETNE 628 (815)
T ss_pred ccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHHhhhhHHHHHHhhcccH
Confidence 77899999887666655 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCCh
Q 000166 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305 (1974)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~ 1305 (1974)
+++.+.++|+...|+.+...+|.++..|+..|.|++..+.|..+|.+|+.++.|.+....++...+..+++.+++..||.
T Consensus 629 ~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~~~~ 708 (815)
T KOG1820|consen 629 ALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALELKER 708 (815)
T ss_pred HhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHhhcCccccccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccCCHHHHhhHHHHH
Q 000166 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385 (1974)
Q Consensus 1306 r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~vg~ls~k~~smLeer~ 1385 (1974)
++|.||++.+.+++..-|.....-.+++..|+-...++|..+|+++.+++...|.+.|+.+|++.+.+.+.|+++++.||
T Consensus 709 ~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 788 (815)
T KOG1820|consen 709 EIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMF 788 (815)
T ss_pred hhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhc
Confidence 99999999999999999987644456789999999999999999999999999999999999999999999999999999
Q ss_pred HHhHH
Q 000166 1386 KWKVR 1390 (1974)
Q Consensus 1386 kr~~k 1390 (1974)
++..+
T Consensus 789 ~~~~~ 793 (815)
T KOG1820|consen 789 PKERR 793 (815)
T ss_pred Ccccc
Confidence 98655
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-56 Score=574.50 Aligned_cols=755 Identities=19% Similarity=0.228 Sum_probs=541.9
Q ss_pred ccCCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh-hHHHHH
Q 000166 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA-KEVCDA 97 (1974)
Q Consensus 19 rL~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~-~~v~~~ 97 (1974)
++..++||.|+++|.. +++|+|+.+|+.+ .++..|+..++....... ...+-.
T Consensus 13 ~l~~~~w~~~~~~~~q-------------------------l~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~ 66 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQ-------------------------LLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLS 66 (815)
T ss_pred hhhhhhhhhhHHHHHH-------------------------HhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeecc
Confidence 3778888888877653 4578899999999 999999988766444332 223455
Q ss_pred HHhhhhcC-ChhhHHHHHHHHHHHHhhchhhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhh
Q 000166 98 IAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176 (1974)
Q Consensus 98 lveK~L~~-r~ktk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~l 176 (1974)
+.++||.. ++.+.+..+++.+.....++...+++.+.+.++.|.||.+++++..+..++.+||...++++.+++.++.+
T Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l 146 (815)
T KOG1820|consen 67 FGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL 146 (815)
T ss_pred chhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc
Confidence 67899975 78888888888888877889999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCC-CCCcchhhhHHhHHhhhhhcccCCC
Q 000166 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVG 255 (1974)
Q Consensus 177 f~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~-~~P~R~~Rs~q~~~~~~~a~~~~~~ 255 (1974)
+ |+|||.++.+|+++||||+|.. .+..++..--+.++.++...+.+.... ....|.+-+.+-.........+...
T Consensus 147 ~---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~ 222 (815)
T KOG1820|consen 147 A---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLE 222 (815)
T ss_pred c---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhccc
Confidence 9 9999999999999999999974 667776566666777777666664321 1111111111110000000000000
Q ss_pred CCCCC--CCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCC--CCCCChhHHHHHHH
Q 000166 256 PGPSE--ESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLK 331 (1974)
Q Consensus 256 ~~~~~--~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pK--i~~~dy~dL~~~Lk 331 (1974)
..... .........+|.||+++||||++|++ .+|.+.|.++|||+|+|||+.+.+++++++ +..+.|+.+...++
T Consensus 223 ~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 223 KPERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred ccccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 00000 01111222389999999999999999 489999999999999999999999998888 55677788888888
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHH
Q 000166 332 KLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTS 411 (1974)
Q Consensus 332 k~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~a 411 (1974)
.+..|+|++||++|++||+.||++||..|.+|++.++|.+|++|||||+.+++++++|+|+|+.. +.++++.+.|.++
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEA 379 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHhhCCh-hHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCH
Q 000166 412 VKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1974)
Q Consensus 412 l~~KnP~vk~etl~~L~r~l~~~~~-~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~ 490 (1974)
++||||++|.+|+.|+.||+...+. .+....++.++|.++++.+|++++||+||.++++++|+++|++.++.+|.++++
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 9999999999999999999998763 333356789999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchh-hhhhhhhhcccCCCC-CCCCCCCCCCCCCCCCCCCCC
Q 000166 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKKDG 568 (1974)
Q Consensus 491 ~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~p-~~~~~~~~k~~~~~~~~a~~~ 568 (1974)
.-++.+.|.+...-.....+.++..++. +..+.+. .++...+......++ ++.+|.... ...++...+..
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~s-s~~~~~~~~~~ 531 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSAPD-------PQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLS-SANSSRKIPEA 531 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCCCC-------ccccccceecccccccCCCCCCCccccCCCccc-ccccccCCcch
Confidence 7566666655431000000000000000 0000000 000000000000000 000000000 00000000000
Q ss_pred CCCccc-ccCCCCCCC-------CC-CCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchh
Q 000166 569 SGKQET-SKLTEAPED-------VE-PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQS 638 (1974)
Q Consensus 569 ~~~~~~-s~~~~~~~~-------~~-~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~~~~~~ 638 (1974)
+..+.. -...+.... .. ..-...+|..+.+...++......+++.|++...++.+.+...-.. .......
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ 611 (815)
T KOG1820|consen 532 AEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSI 611 (815)
T ss_pred hhccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchH
Confidence 000000 000000000 00 0112346666667777888889999999999999999999855444 3333344
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC----CCccchhhhccchhhccccch--hhhHHHHHHHHHHHh
Q 000166 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEA 712 (1974)
Q Consensus 639 ~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~----fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE~ 712 (1974)
.++++.|+. -+|.|+|-++..+.++++........- -+........+-+..+.|..+ .+.....+.....++
T Consensus 612 ~~~~l~~~~--lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v 689 (815)
T KOG1820|consen 612 QDLLLEWLV--LRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEV 689 (815)
T ss_pred HhhhhHHHH--HHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhh
Confidence 567778876 368999999999999999876654211 111111222222333555543 455556677777888
Q ss_pred hchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc
Q 000166 713 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1974)
Q Consensus 713 ~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1974)
++..-....+++.+ ..|+-.++.+|+..+...+..-|+..+...-+.....- +.......+|..+.+.+..+|.+.|+
T Consensus 690 ~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (815)
T KOG1820|consen 690 LSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIAL-LVKASDGKSSSKVKKTSWKPFDFLPD 767 (815)
T ss_pred ccccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccc-cccccchhhhhhhhcccccccccccc
Confidence 88888888888885 89999999999999999999999876555444443333 36778889999999999999999999
Q ss_pred hhHhhhhcchHHHHHHHHHHHhcCCC
Q 000166 793 DIKGFLADVKPALLSALDAEYEKNPF 818 (1974)
Q Consensus 793 ~l~~~l~dlkpall~~Ie~EF~K~~~ 818 (1974)
+++.......+.+.+.++..|.+-..
T Consensus 768 ~~~~~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 768 PSWKISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred hHHHHHHHhhHHHhhhHHHhcCcccc
Confidence 99999999999999999999987543
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.84 E-value=3.4e-20 Score=213.97 Aligned_cols=210 Identities=28% Similarity=0.395 Sum_probs=149.6
Q ss_pred CCCCchhhhhhhccCChHHHHHHHHHHHHhhhcC--CCCCCChhHHHH----HHHHHhcchhHHHHHHHHHHHHHHHHHh
Q 000166 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVCR----TLKKLITDVNIAVAVEAIQAIGNLARGL 356 (1974)
Q Consensus 283 ~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~p--Ki~~~dy~dL~~----~Lkk~l~DsNv~vv~~A~~~i~~LA~gL 356 (1974)
..+. +.|+.+..+.+|++|.+||+.|..++... .-..++|.+.++ .+.+.+.|.|..|+..|+.|++.|+..+
T Consensus 6 ~~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 6 EEIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp GGS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455 47878888999999999999999987644 222234444444 6667888999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-hhhh-HHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000166 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1974)
Q Consensus 357 r~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-l~~~-~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1974)
+.+|.+|+..++|++|++++++|..|++++.+||++++.+ ++ ...+ .+.+..+++||||++|.+++.|+..++...
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~--~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES--CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT--S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999997 45 5666 788889999999999999999999999987
Q ss_pred C--hhHHh--HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHH
Q 000166 435 S--KAAVL--KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (1974)
Q Consensus 435 ~--~~~~~--~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI 496 (1974)
+ ...+. ..++.+++.+.++++|++++||++|..++..+++++|++. ..+++.||+..++.+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 7 23332 2347899999999999999999999999999999999986 566799998777655
No 4
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.69 E-value=1.9e-16 Score=182.96 Aligned_cols=204 Identities=20% Similarity=0.312 Sum_probs=143.3
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchH-------HHHhhhccchhHhHHHHHHHHHHHHHHh
Q 000166 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF-------GGLRGRLYDSNKNLVMATLITLGAVASA 925 (1974)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~-------~aLk~Rl~DsNk~lv~~al~ii~~lA~a 925 (1974)
.|.+.|.++..+.||+.|.|||+.|..++... +......+++ ..+...+.|.|..|+..|+.+++.++..
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~---~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~ 83 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN---APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ 83 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH----B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC---CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35556666779999999999999999999853 1122223333 3666899999999999999999999999
Q ss_pred cChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-chhh-hHHHHHHHhcccCCcchHHHHHHHHHHHhcc
Q 000166 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (1974)
Q Consensus 926 mG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l~~~-~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~ 1003 (1974)
+|..|++|+..++|.++++++|+|+.+|++|.+||++++..++ ...+ ++.+...+.+. ||..|...+.||...+..
T Consensus 84 l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 84 LGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEK 161 (228)
T ss_dssp HGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT
T ss_pred HhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 5666 66777777755 799999999999999998
Q ss_pred CCC-Ccc------hhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHH
Q 000166 1004 LSG-FPD------AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALAL 1062 (1974)
Q Consensus 1004 ~~~-~~~------~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~ 1062 (1974)
.+. ... ...+++.+..+|.|.+++||++|..++..++.++|..+ ...+..|+|..+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~ 226 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKY 226 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---------------
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhccccc
Confidence 872 111 24566778889999999999999999999999999997 44557777765543
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.1e-08 Score=132.23 Aligned_cols=394 Identities=16% Similarity=0.225 Sum_probs=258.9
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhhhhc--CChhhHHHHHHHHHHHHhhc---hhh-hHH
Q 000166 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE---AVD-VFL 130 (1974)
Q Consensus 57 ~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK~L~--~r~ktk~~a~e~~l~~vE~e---~~~-~v~ 130 (1974)
+-.-++..|..=+|.||-.+..+.+.-+....-+- .-+-++..+|++ +++ .|-.|...+-.|++.- ..+ .-+
T Consensus 123 L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~ 200 (1075)
T KOG2171|consen 123 LFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKF 200 (1075)
T ss_pred HHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH-HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHH
Confidence 33458999999999999988877766543222222 234567899998 466 7776666666665542 222 123
Q ss_pred HHHHH--------HhhccCchhHHHHHHHHHHHHHhhCCCccC--hhHHHhhchhhhcCC--ChhHHHHHHHHHHHHHHh
Q 000166 131 DVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRW 198 (1974)
Q Consensus 131 e~ll~--------~~~~K~PKvvaaai~~l~~~l~~FG~kvv~--~K~ilk~l~~lf~h~--dk~VR~ea~~L~velyrw 198 (1974)
..++| ....-+-++...++.++.+++..++- .+. +..|++..=+++.+. |..+|.-|..+++.+-++
T Consensus 201 ~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 201 RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 44444 33444556678888888888888774 442 566778777777765 678999999999999888
Q ss_pred hCCchhhH--HHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCC-CCCCCCCCCCCCCCcccc
Q 000166 199 IGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG-PSEESTADVPPEIDEYEL 275 (1974)
Q Consensus 199 lG~~~lk~--~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~-~~~~~~~~~~~~iDp~dl 275 (1974)
-|...|- .+...|=++.++....+ ..++ -..+...++++.-+||.+
T Consensus 280 -Ap~~~k~~~~~~~~lv~~~l~~mte~------------------------------~~D~ew~~~d~~ded~~~~~~~~ 328 (1075)
T KOG2171|consen 280 -APAMCKKLALLGHTLVPVLLAMMTEE------------------------------EDDDEWSNEDDLDEDDEETPYRA 328 (1075)
T ss_pred -hHHHhhhchhhhccHHHHHHHhcCCc------------------------------ccchhhccccccccccccCcHHH
Confidence 2211111 11122222222211100 0000 000000011111223322
Q ss_pred -----------CCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHH
Q 000166 276 -----------VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAV 343 (1974)
Q Consensus 276 -----------~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~ 343 (1974)
+++.-|++.+= +-+...+.|.+||+|+.+|-+|-.+.. ..+.-.+....++.+.-.-+.|..-.|-.
T Consensus 329 A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~ 407 (1075)
T KOG2171|consen 329 AEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRY 407 (1075)
T ss_pred HHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 22333443332 345566799999999999999988763 55555567888999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHH--HHHHHHHHHHHHHHhcCCC------hhhhHH-HHHHHhhc
Q 000166 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAGCLN------LVDVVE-DVKTSVKN 414 (1974)
Q Consensus 344 ~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~--V~eA~~~aLda~~~~~~~~------l~~~~e-~i~~al~~ 414 (1974)
.|+++||.+++-+.+.|.+|.+..+|+.|--..|.-.+ |..++..||+.++.. |.. |+.+++ -+...+++
T Consensus 408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888777766666555 555666677777665 533 455555 33445567
Q ss_pred CCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhC----CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000166 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1974)
Q Consensus 415 KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~----Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1974)
.+|.|+.++..=++..-.... ..+.++.+.++|.+.++|. +..-++|-...+|++.+-..||.+.+.++.+.
T Consensus 487 ~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred CchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHH
Confidence 789999988888776654332 3345777889998888873 34466777888999999999998777777653
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=8.8e-07 Score=117.33 Aligned_cols=516 Identities=17% Similarity=0.193 Sum_probs=343.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc-hhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y-~~~ 366 (1974)
.+...+-|+.=..|++|=+.+..+...++ +...|..++. -+|-.+-++|+=.+..+...+=+....- ...
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 35556777888889999999988776555 6778888887 8888899999988888887754444333 223
Q ss_pred hHHHHHHH-hccCCHHHHHHHHHHHHHHHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhh
Q 000166 367 LLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1974)
Q Consensus 367 ~l~~lLek-lKEKK~~V~eA~~~aLda~~~~~~-~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k 444 (1974)
+-..||+. ++|.+++||.++...+-.++..-- -.-.+++.-+..+.++.||+.|+-.+..|..+....+. .+...++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~ 158 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLD 158 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHH
Confidence 34444543 689999999999999999998610 02335666777788999999998888887766654432 2335678
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000166 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1974)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1974)
.+.+.+.+|++|.+..||-+|..+++++..... ++...+....+=|.-..-..+.+.-
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~--------------------- 217 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD--------------------- 217 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc---------------------
Confidence 999999999999999999999999999988774 2222222221111111111111100
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000166 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1974)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~ 603 (1974)
..+++
T Consensus 218 ------------------------------------------------------------------~d~~~--------- 222 (1075)
T KOG2171|consen 218 ------------------------------------------------------------------GDDDA--------- 222 (1075)
T ss_pred ------------------------------------------------------------------cchHH---------
Confidence 00000
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-------
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD-QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT------- 675 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~-~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~------- 675 (1974)
-..+++.|.+.++.....- ...+-++.+-..--+=+|-|=-+....|+++..+++.++
T Consensus 223 --------------a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 223 --------------AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred --------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 0112222332223311111 111112221111112245555677788888888887643
Q ss_pred CCCccchhhhccchhhcccc--------------chhhhHHHHHHHHHHHhhchHhHHHHHHHhh---hhcCChhhHHHH
Q 000166 676 KFPKKCVVLCLLGISERVAD--------------IKTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEG 738 (1974)
Q Consensus 676 ~fs~~~~~~~l~~lveKlgD--------------~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~---~~~KnPKv~ae~ 738 (1974)
.+..+.+..++.-.+|-..| --....|.++|-.++=..|++.|+..+++.+ ..+-++|-|..+
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 23445555555555555555 1135677888888999999999888776644 578899999999
Q ss_pred HHHHHHHHHHhccCc-cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh-hcchHHHHHHHHHHHhcC
Q 000166 739 ILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKN 816 (1974)
Q Consensus 739 l~wl~~ai~eFG~~~-l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l-~dlkpall~~Ie~EF~K~ 816 (1974)
|.-++.+-+-.+=.. =++..+++.+... |.++.|-||-+|.+.+|-|---++|.+-.+. +-+.|++...++..
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~---- 443 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST---- 443 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc----
Confidence 999999887443111 1566888888884 9999999999999999999999998887666 66777777766543
Q ss_pred CCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc-ccCCCCCCccc
Q 000166 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGE 895 (1974)
Q Consensus 817 ~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a-nkrI~p~~~ge 895 (1974)
++ =++-.-|--++-...+++ +.-|.|=+ -.
T Consensus 444 --~~----------------------------------------------~rV~ahAa~al~nf~E~~~~~~l~pYL-d~ 474 (1075)
T KOG2171|consen 444 --QN----------------------------------------------VRVQAHAAAALVNFSEECDKSILEPYL-DG 474 (1075)
T ss_pred --Cc----------------------------------------------hHHHHHHHHHHHHHHHhCcHHHHHHHH-HH
Confidence 10 112222222232333332 23344543 55
Q ss_pred hHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc----CchhHHHHHHHHHHHHHHhccch
Q 000166 896 LFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD----NKKHMRECTLTVLDAWLAAVHLD 970 (1974)
Q Consensus 896 L~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D----~K~~vR~aa~~alda~~~~~gl~ 970 (1974)
|+.-+=.+| .-.++.++.+++..|+.+|.|++.+|.+|...++|-+...|.. ....+|....+|+..+..++|=+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 666333344 5667788889999999999999999999999999998887764 44688899999999999999988
Q ss_pred hhhHHHH
Q 000166 971 KMVPYVT 977 (1974)
Q Consensus 971 ~~~~~i~ 977 (1974)
.|.|.-.
T Consensus 555 ~F~~~a~ 561 (1075)
T KOG2171|consen 555 KFLPLAE 561 (1075)
T ss_pred hhhHhHH
Confidence 8887533
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.36 E-value=2e-07 Score=119.38 Aligned_cols=879 Identities=18% Similarity=0.213 Sum_probs=461.4
Q ss_pred cccccCCCChhHHHHHHHHHHHHhhh----cCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh
Q 000166 16 WEDRLLHKNWKVRNEANIDLAALCDS----ITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA 91 (1974)
Q Consensus 16 l~erL~hK~WKaRl~ayeel~~~f~~----~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~ 91 (1974)
|-|+..++.=-=|--|-.+|.+..+. +.+++ +.+....+-|.+.|+|--+|.-|+.++--++.+-.. ...
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dS---e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke---~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDS---ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE---DQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccc---hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH---HHH
Confidence 44556666555677777777776653 22222 233333455789999999999999998766654322 123
Q ss_pred hHHHHHHHhhhhcCChhhHH-HHHHHHHHHHhhc-h-----hhhHHHHHHHHhhccCch------hHHHHHHHHHHHHHh
Q 000166 92 KEVCDAIAAKCLTGRPKTVE-KAQAVFMLWVELE-A-----VDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSE 158 (1974)
Q Consensus 92 ~~v~~~lveK~L~~r~ktk~-~a~e~~l~~vE~e-~-----~~~v~e~ll~~~~~K~PK------vvaaai~~l~~~l~~ 158 (1974)
+.++..+..+.++|+-..+. -|+...+...++- + .-.|+.-+.+-+..-+-| +...++..|...+..
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 44555555666666444444 3445555555553 1 135667777777777777 889999999999999
Q ss_pred hCCCccC-hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhH---HHhhhch-HHHHHHHHHHHHhc------
Q 000166 159 FGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKMR-DTMKKELEVELVNV------ 227 (1974)
Q Consensus 159 FG~kvv~-~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~---~L~~~Lk-p~q~keLe~efek~------ 227 (1974)
||.=..+ =+.|++.+..-+...-..||.-|...++-+-.+.+.++... .|.++|- +.|..++...+.-+
T Consensus 164 ~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ 243 (1233)
T KOG1824|consen 164 FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ 243 (1233)
T ss_pred hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 9984444 35588888888899999999999999998888877543222 2223332 23444443333221
Q ss_pred CCC--------CCCcc--hhhhHH-h---HHh----hhhh----cccCCC---------------CCCCCCCCCCCCCCC
Q 000166 228 SGT--------ARPTR--KIRAEQ-D---KEL----GQEL----ISEDVG---------------PGPSEESTADVPPEI 270 (1974)
Q Consensus 228 ~~~--------~~P~R--~~Rs~q-~---~~~----~~~a----~~~~~~---------------~~~~~~~~~~~~~~i 270 (1974)
.|. ..|-- |.-+.+ + .++ .-++ .+.... =++.=..+ .++|-
T Consensus 244 ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd--~~eDe 321 (1233)
T KOG1824|consen 244 AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD--TEEDE 321 (1233)
T ss_pred hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC--Cccch
Confidence 111 01100 110000 0 000 0000 000000 00000000 00111
Q ss_pred CccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHH
Q 000166 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349 (1974)
Q Consensus 271 Dp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i 349 (1974)
|...+-|..|= + .++-|+.=++--||.|++|..-+..+++ ..-.-+.=|-.+...|-.+++|--=+|.+-.+...
T Consensus 322 d~~~~ed~eDd-e---~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 322 DAMFLEDEEDD-E---QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAY 397 (1233)
T ss_pred hhhhhhccccc-h---hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHH
Confidence 11111111110 0 0245666778889999999999988654 33344555888888888888877777777766665
Q ss_pred HHHHHHhcc----------------ccc-----cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh--c--CCChhhh
Q 000166 350 GNLARGLRT----------------HFS-----GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--G--CLNLVDV 404 (1974)
Q Consensus 350 ~~LA~gLr~----------------~F~-----~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~--~--~~~l~~~ 404 (1974)
-.+-+--|. +|. .....++..|=..++||+..-+.....-|.++... + .-+++.+
T Consensus 398 i~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~sl 477 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSL 477 (1233)
T ss_pred HHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhccccc
Confidence 555443331 122 22345566666778888877666555556655543 1 1235567
Q ss_pred HHHHHHHhhcCC--chhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhh----------------------------
Q 000166 405 VEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---------------------------- 454 (1974)
Q Consensus 405 ~e~i~~al~~Kn--P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l---------------------------- 454 (1974)
+..|.-.+.+|+ .+.|.+.+.|+.-.+..+++..+-+.++.+.|+++.++
T Consensus 478 vpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~ 557 (1233)
T KOG1824|consen 478 VPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPP 557 (1233)
T ss_pred chhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCC
Confidence 778888888888 68999999999999987765554443333444332222
Q ss_pred ----------------------CCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000166 455 ----------------------NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1974)
Q Consensus 455 ----------------------~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1974)
+|++.+||++|..|+|-++-.+|. .+...+...=++-.+++.+-+-..
T Consensus 558 ~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~nEiTRl--------- 627 (1233)
T KOG1824|consen 558 SSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLGNEITRL--------- 627 (1233)
T ss_pred ccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHhchhHHH---------
Confidence 678888888888888888888882 233333222222222222211000
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHH
Q 000166 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 592 (1974)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~E 592 (1974)
++++.. .... .. +..++.
T Consensus 628 -------------------~AvkAl--t~Ia-----------------------------------~S-----~l~i~l- 645 (1233)
T KOG1824|consen 628 -------------------TAVKAL--TLIA-----------------------------------MS-----PLDIDL- 645 (1233)
T ss_pred -------------------HHHHHH--HHHH-----------------------------------hc-----cceeeh-
Confidence 000000 0000 00 001110
Q ss_pred HHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHH
Q 000166 593 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEVINYLA 671 (1974)
Q Consensus 593 e~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~Pg-wkesNfqV~~k~leil~~la 671 (1974)
...+.++ =+++..-+....-+-|++-+..+.+.++...... ..+.+=-.|..-|+ ..||-.+|-+..+.+++.++
T Consensus 646 --~~~l~~i-l~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~-~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~ 721 (1233)
T KOG1824|consen 646 --SPVLTEI-LPELASFLRKNQRALRLATLTALDKLVKNYSDSI-PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLA 721 (1233)
T ss_pred --hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0000001 1233344444445556665555555555432211 22333334445566 48898999888888888877
Q ss_pred HhcCCCCccchhhhccchh-------------------------------------hccccchhh--------------h
Q 000166 672 ATATKFPKKCVVLCLLGIS-------------------------------------ERVADIKTR--------------A 700 (1974)
Q Consensus 672 ~~~~~fs~~~~~~~l~~lv-------------------------------------eKlgD~K~r--------------~ 700 (1974)
...+..--..-..+++.++ +.+..++-. +
T Consensus 722 ~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA 801 (1233)
T KOG1824|consen 722 IIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIA 801 (1233)
T ss_pred hcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHH
Confidence 6433210000011111111 111111100 1
Q ss_pred HHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHH
Q 000166 701 HAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780 (1974)
Q Consensus 701 ~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi 780 (1974)
.....|+..|...+...+..-+......+-|-.++.=|+.-++++=..++. ..-..+-+.+.++ |+|+|..|+.||-
T Consensus 802 ~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f~sp~edvksAAs 878 (1233)
T KOG1824|consen 802 KCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSAAS 878 (1233)
T ss_pred HHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHHHH
Confidence 111122222221222222222222222222333333333333333222222 2223444455666 9999999999999
Q ss_pred HHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccc------c---cccCcCCCCCCCCCCCCccccc
Q 000166 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV------R---ASESTSSVSSGGSDGLPREDIS 851 (1974)
Q Consensus 781 ~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~------r---~~~~~~~~~~~~~d~lpRvDIs 851 (1974)
-.||.+-- |. +-.|| |-++.+|+.+ |.|+- + ..++ .+-..|-+|
T Consensus 879 ~ALGsl~v--gn-l~~yL----pfil~qi~sq-----------pk~QyLLLhSlkevi~~~s-------vd~~~~~v~-- 931 (1233)
T KOG1824|consen 879 YALGSLAV--GN-LPKYL----PFILEQIESQ-----------PKRQYLLLHSLKEVIVSAS-------VDGLKPYVE-- 931 (1233)
T ss_pred HHhhhhhc--Cc-hHhHH----HHHHHHHhcc-----------hHhHHHHHHHHHHHHHHhc-------cchhhhhHH--
Confidence 99998763 32 22333 4445555443 22210 0 0000 000111111
Q ss_pred cCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc--cchhHhHHHHHHHHHHHHHHhcChh
Q 000166 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPA 929 (1974)
Q Consensus 852 ~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl--~DsNk~lv~~al~ii~~lA~amG~~ 929 (1974)
+|=.-|.+.++...==+|.=--|=+.+++ .|.| ..|...|+.++ .++|-.....+ .+--.-+-=-++
T Consensus 932 -~IW~lL~k~cE~~eegtR~vvAECLGkL~-----l~ep---esLlpkL~~~~~S~a~~~rs~vvs--avKfsisd~p~~ 1000 (1233)
T KOG1824|consen 932 -KIWALLFKHCECAEEGTRNVVAECLGKLV-----LIEP---ESLLPKLKLLLRSEASNTRSSVVS--AVKFSISDQPQP 1000 (1233)
T ss_pred -HHHHHHHHhcccchhhhHHHHHHHhhhHH-----hCCh---HHHHHHHHHHhcCCCcchhhhhhh--eeeeeecCCCCc
Confidence 12222344455444333444334444443 2233 56899999988 56665543322 111111111346
Q ss_pred HHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC
Q 000166 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1974)
Q Consensus 930 ~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~ 1007 (1974)
...+.+..+..++..|.|--..||..|+.+++.++--=. ...++|++...|-+.. ..|+|+..=.. +.
T Consensus 1001 id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eT---kvrkelIreVe-----MG-- 1070 (1233)
T KOG1824|consen 1001 IDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSET---KVRKELIREVE-----MG-- 1070 (1233)
T ss_pred cCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhh---hhhHhhhhhhc-----cc--
Confidence 778899999999999999999999999999998764432 3566676666665432 25666654332 11
Q ss_pred cchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1008 ~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
| +.+--|-.-|+||+|.+++-+++-.
T Consensus 1071 --------P-FKH~VDdgLd~RKaaFEcmytLLds 1096 (1233)
T KOG1824|consen 1071 --------P-FKHTVDDGLDLRKAAFECMYTLLDS 1096 (1233)
T ss_pred --------C-ccccccchHHHHHHHHHHHHHHHHh
Confidence 1 2334577889999999999887643
No 8
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.99 E-value=1.6e-08 Score=122.52 Aligned_cols=370 Identities=17% Similarity=0.198 Sum_probs=245.8
Q ss_pred hHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc--cChhH----HHhhchhhhcCCCh-hHHHHHHHHHHHHHHhhC
Q 000166 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKR----ILKMLPELFDHQDQ-NVRASSKGLTLELCRWIG 200 (1974)
Q Consensus 128 ~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kv--v~~K~----ilk~l~~lf~h~dk-~VR~ea~~L~velyrwlG 200 (1974)
.+.+.+-.-...-.||-+..-...++....+|-... ...++ +-|+.|-.|.-..- .+-...-..+.+++--.-
T Consensus 102 ~~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm~~~~~d~~~~~l~~~~v~s~l~~~~~~n~ 181 (516)
T KOG2956|consen 102 KVCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKMFPWMFDPRIENLLTPHVESSLCSLFALNN 181 (516)
T ss_pred HHHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhccccccCchhhccccHHHHHHHHHHHHHHh
Confidence 455555555556679999999999999988876533 22333 55555555554332 233344455555555555
Q ss_pred CchhhHHHhhhchHHHHHHHHHHHHhcC--CCCCCcchhhhHHhHH----------hhhhhcccCCCCCCCCCCCCC---
Q 000166 201 KDPVKTILFEKMRDTMKKELEVELVNVS--GTARPTRKIRAEQDKE----------LGQELISEDVGPGPSEESTAD--- 265 (1974)
Q Consensus 201 ~~~lk~~L~~~Lkp~q~keLe~efek~~--~~~~P~R~~Rs~q~~~----------~~~~a~~~~~~~~~~~~~~~~--- 265 (1974)
.+ + +.+++.+.|.+..---+-.+... ++.++.+-.+...... ...+........ ...+....
T Consensus 182 a~-f-ss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~-~~~~~~~~~n~ 258 (516)
T KOG2956|consen 182 AD-F-SSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPEEEKPGLGSTK-VNPEELRLSNE 258 (516)
T ss_pred hc-h-HhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChhhcccCCCccc-cCccccccccc
Confidence 55 5 45678888876432222222222 2223333111111000 000000000000 00000000
Q ss_pred -------CCCC-CCccccCCccccc-CCCCchhhhhhhcc-CChHHHHHHHHHHHHhhhc--CCCCCCChhHHHHHHHHH
Q 000166 266 -------VPPE-IDEYELVDPVDIL-TPLEKSGFWEGVKA-TKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKL 333 (1974)
Q Consensus 266 -------~~~~-iDp~dl~~pvdIl-~klpk~~f~~~l~s-~KWkeRkEALe~L~~L~~~--pKi~~~dy~dL~~~Lkk~ 333 (1974)
+..- -|+.|-..|..+. +.++ .+...++.. -+=.+|++||.+|..++-. --++...|++|.-.+=.+
T Consensus 259 ~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v-~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~Ev 337 (516)
T KOG2956|consen 259 TERLSRLEEYSTDDSMDQLTPNSVDQSALV-ADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEV 337 (516)
T ss_pred hhhhhhchhhccCcchhhCCCCCcchhHHH-HHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 0000 1123333343332 2333 355666654 4889999999999987643 344567799999999999
Q ss_pred hcc-hhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh
Q 000166 334 ITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1974)
Q Consensus 334 l~D-sNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al 412 (1974)
++| .+-..-.+|+++|+.+++.-.+.|..|..+.+..+|+.-||.-..|...+.+++.....+ ..++ .++.-|...+
T Consensus 338 L~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las-~~P~-~~I~~i~~~I 415 (516)
T KOG2956|consen 338 LSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS-HLPL-QCIVNISPLI 415 (516)
T ss_pred HccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh-hCch-hHHHHHhhHH
Confidence 998 899999999999999999999999999999999999999999887776666665555544 2444 4455565555
Q ss_pred hcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHH
Q 000166 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492 (1974)
Q Consensus 413 ~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~k 492 (1974)
.+---+.-.-+++.++|.++..+...+..++.+++|.+++..+-+...||++|.-||.++...+|++.|.|+|++|...|
T Consensus 416 lt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk 495 (516)
T KOG2956|consen 416 LTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSK 495 (516)
T ss_pred hcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHH
Confidence 55444555577889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 000166 493 RNKLSEMIAGS 503 (1974)
Q Consensus 493 k~KI~e~~~~~ 503 (1974)
++-|+=|++.+
T Consensus 496 ~~LlqlYinRa 506 (516)
T KOG2956|consen 496 LNLLQLYINRA 506 (516)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.1e-05 Score=101.03 Aligned_cols=350 Identities=20% Similarity=0.263 Sum_probs=218.1
Q ss_pred cCCCCH-HHHHHHHHHHHHHHHHcChhhhhh-hhHHHHHHHhhhhc----CChhhHHHHHHHHHHHHhhch------hhh
Q 000166 61 VADSNA-PVQDKALDALIAYLKAADADAGRY-AKEVCDAIAAKCLT----GRPKTVEKAQAVFMLWVELEA------VDV 128 (1974)
Q Consensus 61 v~DsN~-~aqEk~leal~~~l~~a~~~~~~~-~~~v~~~lveK~L~----~r~ktk~~a~e~~l~~vE~e~------~~~ 128 (1974)
+-|++. ..||-++.||..+.+-+....-+- ....+..++-|-|- .-|+.+..|+.|+-.||=+-. .+.
T Consensus 136 ~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~ 215 (885)
T KOG2023|consen 136 LLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDK 215 (885)
T ss_pred HhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHH
Confidence 455655 678999999988776642211110 11233444555442 479999999999988885532 245
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHhhCC-CccC-hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHh-hCCchhh
Q 000166 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA-KIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVK 205 (1974)
Q Consensus 129 v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~-kvv~-~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrw-lG~~~lk 205 (1974)
++|.+....+.-+|-|...-..++.-+ -+|-+ +.+| +..|++++=..-.+.|-+|-=||-.+-..+.-- +-+..++
T Consensus 216 Fle~lFalanD~~~eVRk~vC~alv~L-levr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 216 FLEILFALANDEDPEVRKNVCRALVFL-LEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHH-HHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 556555555556665444433333332 34555 6665 788999999999999999999988775544311 2233455
Q ss_pred HHHhhhchHHHHHHH-----HHHHHh-cCC---------CCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCC
Q 000166 206 TILFEKMRDTMKKEL-----EVELVN-VSG---------TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEI 270 (1974)
Q Consensus 206 ~~L~~~Lkp~q~keL-----e~efek-~~~---------~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~i 270 (1974)
++| ++|=|+.+.-. +--.-+ .+. ..+| |+-++.+. +.+...+ +++++-
T Consensus 295 p~l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP-Rfhksk~~----------~~~~~~~-----~eDddd 357 (885)
T KOG2023|consen 295 PYL-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP-RFHKSKEH----------GNGEDAD-----DEDDDD 357 (885)
T ss_pred HHH-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccc-hhhhchhc----------cCccccc-----cccccc
Confidence 555 66666665321 111111 111 1233 55554432 1111111 111111
Q ss_pred CccccCCcccccCCCCchhhhhhhccCChHHHH---HHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHH
Q 000166 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERK---DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (1974)
Q Consensus 271 Dp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRk---EALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~ 347 (1974)
|.+| +.=....|--|| .+|+-|..+... .-.--++..||..+..-+=.|--.++=
T Consensus 358 De~D-----------------DdD~~~dWNLRkCSAAaLDVLanvf~~-----elL~~l~PlLk~~L~~~~W~vrEagvL 415 (885)
T KOG2023|consen 358 DEDD-----------------DDDAFSDWNLRKCSAAALDVLANVFGD-----ELLPILLPLLKEHLSSEEWKVREAGVL 415 (885)
T ss_pred cccc-----------------cccccccccHhhccHHHHHHHHHhhHH-----HHHHHHHHHHHHHcCcchhhhhhhhHH
Confidence 1111 111224688888 455555443211 113346778888888777788888889
Q ss_pred HHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHH
Q 000166 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1974)
Q Consensus 348 ~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L 427 (1974)
++|+||+|=.++|.+|...++|-++..+-|||+-||.- +|.+|......+
T Consensus 416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsI-----------TCWTLsRys~wv------------------- 465 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSI-----------TCWTLSRYSKWV------------------- 465 (885)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeee-----------eeeeHhhhhhhH-------------------
Confidence 99999999999999999999999999999999999841 377776543322
Q ss_pred HHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000166 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1974)
Q Consensus 428 ~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1974)
++.. + .++++.++..+++.+-|++..|.+||+.+++++---.|++ +.+|++.+
T Consensus 466 ---~~~~-~---~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~I 518 (885)
T KOG2023|consen 466 ---VQDS-R---DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYI 518 (885)
T ss_pred ---hcCC-h---HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHH
Confidence 1111 1 2335777888899999999999999999999999999976 66777754
No 10
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.74 E-value=0.0011 Score=95.10 Aligned_cols=608 Identities=14% Similarity=0.126 Sum_probs=350.3
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhh-cCCCCC--CChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc--
Q 000166 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-- 363 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~--~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y-- 363 (1974)
+.+-+.+.+=..+.+|...|..++. .+.... -+.| .+..|-+++. +.+..+.-.|+.+++.||.+ ...+..+
T Consensus 194 LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaG-aVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~-s~e~r~~Iv 271 (2102)
T PLN03200 194 LVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAG-AVKQLLKLLGQGNEVSVRAEAAGALEALSSQ-SKEAKQAIA 271 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHccCCChHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 5555566666677778777766543 232111 1222 2667777886 67788999999999999975 2233333
Q ss_pred hhhhHHHHHHHhcc---------CCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC-CchhHHHHH---HHHHHH
Q 000166 364 SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTL---NWVTFC 430 (1974)
Q Consensus 364 ~~~~l~~lLeklKE---------KK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~K-nP~vk~etl---~~L~r~ 430 (1974)
....+|++++-+.. .+..+++.+.-||-.++. ....++..+...+.+. .+.+-..++ .++.+.
T Consensus 272 ~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg----g~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 272 DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG----GMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC----CchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 23458888887752 345567777777776654 3344555555555432 222222333 333333
Q ss_pred HhhCChhHHhHhh--hhhHHHHHhhhCCCCHHH-HHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCC
Q 000166 431 IETSSKAAVLKVH--KDYVPICMECLNDGTPEV-RDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDV 507 (1974)
Q Consensus 431 l~~~~~~~~~~~~--k~~~~~l~k~l~Ds~~~V-R~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~ 507 (1974)
+.... .....+ ..+++.+++++..+++.+ .+.+.++|..+ +|...+...+.+-|. . +-+..++....
T Consensus 348 ~d~~~--~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl---~gN~~l~~~L~~~da-i-k~LV~LL~~~~--- 417 (2102)
T PLN03200 348 FDSSA--ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL---YGNAYLSRKLNHAEA-K-KVLVGLITMAT--- 417 (2102)
T ss_pred cCCch--hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh---cCChHHHHHHHhccc-h-hhhhhhhccCC---
Confidence 33211 111111 246789999998887774 77777776442 333333333322110 0 01111111000
Q ss_pred CCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 000166 508 ATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPS 587 (1974)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~ 587 (1974)
...+........ ...
T Consensus 418 ------------------------~evQ~~Av~aL~--------------------------------~L~--------- 432 (2102)
T PLN03200 418 ------------------------ADVQEELIRALS--------------------------------SLC--------- 432 (2102)
T ss_pred ------------------------HHHHHHHHHHHH--------------------------------HHh---------
Confidence 000000000000 000
Q ss_pred CCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHH
Q 000166 588 EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQ 661 (1974)
Q Consensus 588 ~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~------~~~~~~Lvr~l~~~PgwkesNfqV~~ 661 (1974)
.-+.|-.+.....-.-+-++..|.+.+=..|..|+..+.....+.++. ......|+++|. ..++.++.
T Consensus 433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~------s~~~~iqe 506 (2102)
T PLN03200 433 CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE------TGSQKAKE 506 (2102)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc------CCCHHHHH
Confidence 001122222222223356677777777777777776665433321110 122456676664 33677888
Q ss_pred HHHHHHHHHHHhcCCCCccch--hhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHH
Q 000166 662 QVIEVINYLAATATKFPKKCV--VLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSE 737 (1974)
Q Consensus 662 k~leil~~la~~~~~fs~~~~--~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae 737 (1974)
...-+|..++.. ..--+..+ .-+++.+++-+ ||.+.+..+..+|..++.... ..++.++... ..+.+|+++.-
T Consensus 507 eAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~~I~~Lv~L-Llsdd~~~~~~ 583 (2102)
T PLN03200 507 DSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AATISQLTAL-LLGDLPESKVH 583 (2102)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-hhHHHHHHHH-hcCCChhHHHH
Confidence 777777766532 11111222 12455555544 456788888888888876433 3455666654 68899999999
Q ss_pred HHHHHHHHHHHhcc-----CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000166 738 GILWMVSAVEDFGV-----SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1974)
Q Consensus 738 ~l~wl~~ai~eFG~-----~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~E 812 (1974)
++.-+..++.--.. .++..-.-|+.+.+. |.+.|+.++..|..+|..+...- ++....+ +++
T Consensus 584 aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~-~d~~~av----------v~a- 650 (2102)
T PLN03200 584 VLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSR-QDLCESL----------ATD- 650 (2102)
T ss_pred HHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCC-hHHHHHH----------HHc-
Confidence 99888776551111 111112456677777 89999999999998887666311 0000000 000
Q ss_pred HhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcc--cCCCC
Q 000166 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQP 890 (1974)
Q Consensus 813 F~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~an--krI~p 890 (1974)
+-|+ -++.-+.+.+-++|+|+--+|..+....+ ++..-
T Consensus 651 ---------------------------------------gaIp-PLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~ 690 (2102)
T PLN03200 651 ---------------------------------------EIIN-PCIKLLTNNTEAVATQSARALAALSRSIKENRKVSY 690 (2102)
T ss_pred ---------------------------------------CCHH-HHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0023 37777888899999999999999985221 11110
Q ss_pred CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch
Q 000166 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (1974)
Q Consensus 891 ~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~ 970 (1974)
.-...++.|..-|++.+..++..|+..++.|+..-.-..+-..-..+++++..|.+....+|+.|..+|-..+.+...+
T Consensus 691 -v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 691 -AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred -HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence 1133577799999999999999999999999876532211122345899999999999999999999999998888876
Q ss_pred hhh-H---------HHHHHHhcccC-Ccch--HHHHHHHHHHHhccCCC-Cc------chhhhhhhHhhhccCCChHHHH
Q 000166 971 KMV-P---------YVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPASIAMTDKSSDVRK 1030 (1974)
Q Consensus 971 ~~~-~---------~i~~~L~~~~~-~p~~--R~e~l~wL~~~l~~~~~-~~------~~~~~~~p~~~~L~Dr~~dVRk 1030 (1974)
..+ . .+.+.|...+. +... =-+.+.||++.=.+... .+ +.-.-+.|++.||.+-+++|-+
T Consensus 770 ~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~ 849 (2102)
T PLN03200 770 DVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQD 849 (2102)
T ss_pred HHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHH
Confidence 644 2 35555653221 2221 34788899884222211 12 2234578899999999999999
Q ss_pred HHHHHHHHHHH
Q 000166 1031 AAEACIVEILR 1041 (1974)
Q Consensus 1031 aA~~~L~~~m~ 1041 (1974)
.|-++|..+.+
T Consensus 850 kai~il~~~~~ 860 (2102)
T PLN03200 850 KAIEILSRLCR 860 (2102)
T ss_pred HHHHHHHHHhc
Confidence 99999987754
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.73 E-value=0.0089 Score=86.32 Aligned_cols=796 Identities=15% Similarity=0.152 Sum_probs=419.4
Q ss_pred CcccccCCCCchhhhhhhccC--ChHHHHHHHHHHHHhhhcC---CCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 000166 277 DPVDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGN 351 (1974)
Q Consensus 277 ~pvdIl~klpk~~f~~~l~s~--KWkeRkEALe~L~~L~~~p---Ki~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~ 351 (1974)
||....... ..+.+++.+. +=++|+.++-+|..+.+.. |..=++.++.+..|-..|.--+..+...|+.++..
T Consensus 7 ~~~~~~~~v--~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~n 84 (2102)
T PLN03200 7 DPDGTLASV--AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGV 84 (2102)
T ss_pred CccchHHHH--HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444444 3688899866 7799999999999987533 22112234456666667753456666677777777
Q ss_pred HHHH--hccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-CC----C---hhhhHHHHHHHhhcCCc---h
Q 000166 352 LARG--LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CL----N---LVDVVEDVKTSVKNKVP---L 418 (1974)
Q Consensus 352 LA~g--Lr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~-~~----~---l~~~~e~i~~al~~KnP---~ 418 (1974)
|+.- .+...- ....+|++++-|++-....++.+..+|..+...+ |- . -...++.+...+++.+. .
T Consensus 85 LS~~e~nk~~Iv--~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 85 LCKEEDLRVKVL--LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HhcCHHHHHHHH--HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 7643 222221 2689999999999999999999999999887531 00 0 12345666677776542 1
Q ss_pred hHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHH
Q 000166 419 VRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLS 497 (1974)
Q Consensus 419 vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~ 497 (1974)
++..+..-|...- .+.......++ ...+|.++..|.+.++.++..|+.+|..++...++ .....++ ..- -..+.
T Consensus 163 L~~~Av~AL~nLs-~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~~aVIe-aGa--VP~LV 237 (2102)
T PLN03200 163 VEGLLTGALRNLC-GSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-SISKVLD-AGA--VKQLL 237 (2102)
T ss_pred HHHHHHHHHHHHh-cCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HHHHHHH-CCC--HHHHH
Confidence 2222222332222 22211111112 34899999999999999999999888877655442 1111110 000 01111
Q ss_pred HHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000166 498 EMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577 (1974)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~ 577 (1974)
+++.... ...
T Consensus 238 ~LL~sg~--------------------------~~~-------------------------------------------- 247 (2102)
T PLN03200 238 KLLGQGN--------------------------EVS-------------------------------------------- 247 (2102)
T ss_pred HHHccCC--------------------------ChH--------------------------------------------
Confidence 2221000 000
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCC----c
Q 000166 578 TEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGW----S 653 (1974)
Q Consensus 578 ~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~Pgw----k 653 (1974)
-.|++- ..+..|.+.+...|-..++ ....+.|++++. .|.. .
T Consensus 248 ------------VRE~AA---------~AL~nLAs~s~e~r~~Iv~------------aGgIp~LI~lL~-sp~~e~~~~ 293 (2102)
T PLN03200 248 ------------VRAEAA---------GALEALSSQSKEAKQAIAD------------AGGIPALINATV-APSKEFMQG 293 (2102)
T ss_pred ------------HHHHHH---------HHHHHHhcCCHHHHHHHHH------------CCCHHHHHHHHh-Ccchhhhcc
Confidence 011111 1222233333333322111 012344555543 1221 2
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHH------HHHHHH-------hhchHhHHH
Q 000166 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKC------LTTFSE-------AVGPGFIFE 720 (1974)
Q Consensus 654 esNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~------L~~~aE-------~~~p~~V~~ 720 (1974)
+.|-..+....-+|..++. .. ..+++.+.+-+...+......++ ++.+++ .+.+.-+..
T Consensus 294 ~~~~~Lqe~AvwALsNIcg---g~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~ 365 (2102)
T PLN03200 294 EFAQALQENAMGALANICG---GM-----SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQ 365 (2102)
T ss_pred ccchHHHHHHHHHHHHHhC---Cc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHH
Confidence 3344444444444443332 11 12233333332222222211221 111111 122222333
Q ss_pred HHHHhhhhcCChhh-H---HHHH------HHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhh
Q 000166 721 RLYKIMKDHKNPKV-L---SEGI------LWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV 790 (1974)
Q Consensus 721 ~l~~~~~~~KnPKv-~---ae~l------~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~ 790 (1974)
.+.. +.+||+|.. + .++| ..+...|.+-|. ++.+-.+ |..++..+++.++..|..+-..
T Consensus 366 ~LV~-Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~da--------ik~LV~L-L~~~~~evQ~~Av~aL~~L~~~- 434 (2102)
T PLN03200 366 ILVK-LLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEA--------KKVLVGL-ITMATADVQEELIRALSSLCCG- 434 (2102)
T ss_pred HHHH-HhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccc--------hhhhhhh-hccCCHHHHHHHHHHHHHHhCC-
Confidence 4444 357888886 4 3343 233444444332 2334445 7788899999998887655432
Q ss_pred CchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHH
Q 000166 791 GPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870 (1974)
Q Consensus 791 G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~R 870 (1974)
++..+..+.+ .+ .-+-|+.-+++.+=..|
T Consensus 435 ~~e~~~aIi~------------------~g---------------------------------gIp~LV~LL~s~s~~iQ 463 (2102)
T PLN03200 435 KGGLWEALGG------------------RE---------------------------------GVQLLISLLGLSSEQQQ 463 (2102)
T ss_pred CHHHHHHHHH------------------cC---------------------------------cHHHHHHHHcCCCHHHH
Confidence 1223332211 00 01346677777777788
Q ss_pred HHHHHHHHHHHHHc-ccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh--hhhhHHHHHHhcc
Q 000166 871 LESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGD 947 (1974)
Q Consensus 871 kEaLe~v~~il~~a-nkrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~--k~l~~~il~~l~D 947 (1974)
..|+..+..|-... ..+..--. ...++.|-.-|...+..+...|+.+++.|+.. .......+ -..+|++++.|.+
T Consensus 464 ~~A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~s 541 (2102)
T PLN03200 464 EYAVALLAILTDEVDESKWAITA-AGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKN 541 (2102)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhC
Confidence 88888887776321 01111111 23566777777778889999999999999873 33444444 3689999999999
Q ss_pred CchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC------cchhhhhhhHhhhc
Q 000166 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF------PDAAHLLKPASIAM 1021 (1974)
Q Consensus 948 ~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~------~~~~~~~~p~~~~L 1021 (1974)
....+++.+..+|....... =...++.+...|.++ ++..+.-++.=|..-+...... ......+.+++..|
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsd--d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL 618 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGD--LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL 618 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCC--ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH
Confidence 99999998888888775432 223334444445432 2333333333221111100000 00011233344444
Q ss_pred cCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000166 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNR 1101 (1974)
Q Consensus 1022 ~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (1974)
+..+.++++.|..+|..+.
T Consensus 619 ~sgs~~ikk~Aa~iLsnL~------------------------------------------------------------- 637 (2102)
T PLN03200 619 SSSKEETQEKAASVLADIF------------------------------------------------------------- 637 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHh-------------------------------------------------------------
Confidence 4444555554444443322
Q ss_pred CCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcc
Q 000166 1102 AISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS 1181 (1974)
Q Consensus 1102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~ 1181 (1974)
.-+.++++++ ...-.=+-++..|.+
T Consensus 638 ----------------------------------------------------a~~~d~~~av---v~agaIpPLV~LLss 662 (2102)
T PLN03200 638 ----------------------------------------------------SSRQDLCESL---ATDEIINPCIKLLTN 662 (2102)
T ss_pred ----------------------------------------------------cCChHHHHHH---HHcCCHHHHHHHHhc
Confidence 1222222221 111122233334444
Q ss_pred cCHHHHHHHHHHHHHhcCCCh----hhhhH--hHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHh
Q 000166 1182 TDFKKQVDGLEMLQKALPSIR----KDIIE--VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1255 (1974)
Q Consensus 1182 ~Dfk~~l~al~~l~~~l~~~~----~~~i~--~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~ 1255 (1974)
.+|.-.-++.-.|........ ..++. .+-.+++++ .+.+..+...+++.|..++..-... .+.=..
T Consensus 663 ~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL----~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~ 734 (2102)
T PLN03200 663 NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA----KSSSIEVAEQAVCALANLLSDPEVA----AEALAE 734 (2102)
T ss_pred CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH----hCCChHHHHHHHHHHHHHHcCchHH----HHHHhc
Confidence 444333222222222111111 11111 133344443 4567777778777777555432111 111223
Q ss_pred hhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchH----------HHHHhhhccCChhh--HhHHHHHHHHHHH-hh
Q 000166 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTL----------PYILEGLRSKNNRT--RIECVDLVGFLID-HH 1322 (1974)
Q Consensus 1256 ~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf----------~~l~~glksKN~r~--R~EcL~el~~li~-~~ 1322 (1974)
-++|.|+.=+.+..+.+|+..-..+-++|.-+|...+| .-|++-|++=|.+. -.|-||.|+.+.. ++
T Consensus 735 ~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~ 814 (2102)
T PLN03200 735 DIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKG 814 (2102)
T ss_pred CcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcc
Confidence 45899998888888889999999999999999988865 22345567777655 4478999998877 45
Q ss_pred cCccccc--------cchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccC---CHHHHhhHHHHHHHh
Q 000166 1323 GAEISGQ--------LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL---TDAQKSMLDDRFKWK 1388 (1974)
Q Consensus 1323 G~~v~~~--------~Kal~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~vg~l---s~k~~smLeer~kr~ 1388 (1974)
|.+...| +-.|.-+-.++++-.|.|-..||..|. .+++|+- ..+|++ .++-.+-|-.|+=.+
T Consensus 815 ~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 815 GANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILS---RLCRDQP-VVLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred cCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHH---HHhccCh-hHHHHHHhcccchHHHHHHHHhhc
Confidence 5443212 245677888889999999999999998 5566652 223332 466677788887665
No 12
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=5.8e-07 Score=113.22 Aligned_cols=305 Identities=18% Similarity=0.177 Sum_probs=213.7
Q ss_pred hccCchhHHHHHHHHHHHHHhhCCCcc-ChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000166 138 KNKVAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1974)
Q Consensus 138 ~~K~PKvvaaai~~l~~~l~~FG~kvv-~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q 216 (1974)
.+..|.+-..-+.+...++.+-|-+.+ +++++...- +=...+-++|+....+.+.+-+++-.. +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~--l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQR--LNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHH--hccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 566677777777788888888887543 444432210 001128899999888888877666421 11211
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhcc
Q 000166 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (1974)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s 296 (1974)
+-+|..|+.. .+|+...+..-..- -.+ ..... . -.+...++ +...+.+++
T Consensus 96 -~~~~~~~~~~---~tps~~~q~~~~~~-l~~-~~~~~--------~-----------~~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEEL---DTPSKSVQRAVSTC-LPP-LVVLS--------K-----------GLSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhc---CCCcHHHHHHHHHH-hhh-HHHHh--------h-----------ccCHHHHH-----HHHHHHhcc
Confidence 3344445443 23332221110000 000 00000 0 00111222 345677889
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhccccccchhhhHHHHHHHh
Q 000166 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1974)
Q Consensus 297 ~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~-A~~~i~~LA~gLr~~F~~y~~~~l~~lLekl 375 (1974)
.+-.+|+.+-.++..+....=+..--=..++..|-+-+.|-|-..... ++-+.......||+.|+||...++|.+|.+|
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999888877665555333467888999999998888885 8888999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCh---hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHh
Q 000166 376 KEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (1974)
Q Consensus 376 KEKK~~V~eA~~~aLda~~~~~~~~l---~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k 452 (1974)
+|+=+.||+|+..|..+++. |++. ..++..++..+....++-|...+..|. ++..+-+..+..++..++|.+..
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~--~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMR--CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred hccchhhhHHHHHHHHHHHH--hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHH
Confidence 99999999999999999998 5663 455666666666668888888887776 77777666776777899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000166 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1974)
Q Consensus 453 ~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1974)
.|.|+.++||++|.+||-.+-.++....+.+++.
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip 336 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIP 336 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999999999999988888776666654
No 13
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=3.1e-05 Score=97.27 Aligned_cols=550 Identities=16% Similarity=0.196 Sum_probs=316.4
Q ss_pred HHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc-ccchhhhHHHHHHHhccCCHH
Q 000166 303 KDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF-SGSSRFLLPVLLEKLKEKKPT 381 (1974)
Q Consensus 303 kEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F-~~y~~~~l~~lLeklKEKK~~ 381 (1974)
=|.|..|..++..+-.... ..-+.+|.|+..|| |.-+-.+| .+...+++|.+|+-|+---|.
T Consensus 127 pelLp~L~~~L~s~d~n~~--EgA~~AL~KIcEDs---------------a~~lds~~~~rpl~~mipkfl~f~~h~spk 189 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTC--EGAFGALQKICEDS---------------AQFLDSDVLTRPLNIMIPKFLQFFKHPSPK 189 (885)
T ss_pred hhHHHHHHHHhcCCccccc--chhHHHHHHHHhhh---------------HHHHhhhcccCchHHhHHHHHHHHhCCChh
Confidence 4566666665554443210 01234455555444 33333322 356889999999999999999
Q ss_pred HHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCC
Q 000166 382 VAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1974)
Q Consensus 382 V~eA~~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1974)
+|..+..|++.+.-.. ...++.++|.+..--.+.+|.||.+...=|.-.++-.+. .+.+.+..++..++....|.
T Consensus 190 iRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~ 268 (885)
T KOG2023|consen 190 IRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDV 268 (885)
T ss_pred HHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCc
Confidence 9999999998765321 134667777777666788899999999888888775543 23345578888999999999
Q ss_pred CHHHHHHHHHHHHHHHHH-hChhHHHHHhhcCCHHHHHHHH-----HHHhcCCCCCCCCCCCccccCCCCCCCCCCCcch
Q 000166 458 TPEVRDAAFSVLAAIAKS-VGMRPLERSIEKLDDVRRNKLS-----EMIAGSGGDVATGTSSARVQTSGGSVPSVEASES 531 (1974)
Q Consensus 458 ~~~VR~aA~~~l~~lmk~-~Ge~~l~~~l~~Ld~~kk~KI~-----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1974)
+++|-=.|+|..-++... +-...+.+|+.+|=|.-..+.. ..+-+.. ..-..++ -++
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~------eeD~~vp----------Dre- 331 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNN------EEDESVP----------DRE- 331 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCc------cccccCC----------chh-
Confidence 999999999988887754 3356788888876554332210 0110000 0000000 000
Q ss_pred hhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhh
Q 000166 532 SFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK 611 (1974)
Q Consensus 532 ~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~ 611 (1974)
.-.+|-=. |+...+.+..+ +.+|..+.+...+|+
T Consensus 332 -----------eDIkPRfh----------ksk~~~~~~~~--------~~eDdddDe~DDdD~----------------- 365 (885)
T KOG2023|consen 332 -----------EDIKPRFH----------KSKEHGNGEDA--------DDEDDDDDEDDDDDA----------------- 365 (885)
T ss_pred -----------hhccchhh----------hchhccCcccc--------ccccccccccccccc-----------------
Confidence 00111100 11111111100 112222333333333
Q ss_pred hccHHHHHHH---HHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccc
Q 000166 612 SAVWKERLEA---ISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (1974)
Q Consensus 612 s~~WK~RL~a---~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~ 688 (1974)
.++|.-|.-. +.-+...+.. .-.++++=.|..+- ..-+-.|...++=++.++|+.|-.+.-.....++|.
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~-----elL~~l~PlLk~~L--~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~ 438 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGD-----ELLPILLPLLKEHL--SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPF 438 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHH-----HHHHHHHHHHHHHc--CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHH
Confidence 2478777643 3333322222 12333433332221 112334556666678888887655555555678888
Q ss_pred hhhccccch--hhhHHHHHHHHHHHh---hch----HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccch-Hh
Q 000166 689 ISERVADIK--TRAHAMKCLTTFSEA---VGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL-KD 758 (1974)
Q Consensus 689 lveKlgD~K--~r~~a~e~L~~~aE~---~~p----~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~-K~ 758 (1974)
++.-+.|.| +|...+=+|..|+-= .++ ..|++.++..+ =.+|-|||.++|.-++...++-|-..|+. ..
T Consensus 439 l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~ 517 (885)
T KOG2023|consen 439 LLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFATLEEEAGEELVPYLEY 517 (885)
T ss_pred HHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 888888877 677666667766641 122 23444444443 36788888888888888888888765552 33
Q ss_pred HHHHHhhh--cCCCccHHHHHHHHHHHHHHHhhhCchh--HhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCc
Q 000166 759 LIDFCKDT--GLQSSAAATRNATIKLLGALHKFVGPDI--KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1974)
Q Consensus 759 lI~~~k~~--~L~~sN~~VR~aAi~Ll~~ly~~~G~~l--~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~ 834 (1974)
+++.+-.+ ..++.|=-|-=- .+|++--.+|..| ..|++=+=|.|+ +.|+..+.+.
T Consensus 518 IL~~l~~af~kYQ~KNLlILYD---AIgtlAdsvg~~Ln~~~YiqiLmPPLi----~KW~~lsd~D-------------- 576 (885)
T KOG2023|consen 518 ILDQLVFAFGKYQKKNLLILYD---AIGTLADSVGHALNKPAYIQILMPPLI----EKWELLSDSD-------------- 576 (885)
T ss_pred HHHHHHHHHHHHhhcceehHHH---HHHHHHHHHHHhcCcHHHHHHhccHHH----HHHHhcCccc--------------
Confidence 33332221 012222222111 1344444455554 233443333333 3444443321
Q ss_pred CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHH
Q 000166 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914 (1974)
Q Consensus 835 ~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~ 914 (1974)
-|++|=-+..+.|...+-..+--=.|-+=.-...-+++-++.- -+.+...+++.+ .+..+..
T Consensus 577 -------KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~-~~~~~~~~~~~p----------dkdfiI~ 638 (885)
T KOG2023|consen 577 -------KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLL-AKVQQDPTVEAP----------DKDFIIV 638 (885)
T ss_pred -------chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHH-HhccCCccccCC----------CcceEEE
Confidence 2556666655555555555555556666555555555433211 122332234432 2566778
Q ss_pred HHHHHHHHHHhcChhHHhhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 915 TLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 915 al~ii~~lA~amG~~~~k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
+|..++.||+|+|.+.+..+ ..++.-++.|+.|.-+-||+.+-+-|.-....| .+.+.|.+.+.|.
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c-~~~v~p~~~~fl~ 706 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC-FEHVIPNLADFLP 706 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHhccchHHHHHH
Confidence 99999999999999999863 358888999999999999999999999888888 6777776666654
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.54 E-value=0.00067 Score=86.13 Aligned_cols=569 Identities=19% Similarity=0.227 Sum_probs=320.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC
Q 000166 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (1974)
Q Consensus 336 DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~K 415 (1974)
|-........-++|..||++-|=.| .+..|=--+--+-.-||+-...|.-.++.. +.+..++.-+...-++|
T Consensus 452 ded~yar~egreIisnLakaaGla~------mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLAT------MISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhHH------HHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 3344445556667776666543221 222222233445566777777777767664 78888888777777766
Q ss_pred -CchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHHhhcCCH-
Q 000166 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDD- 490 (1974)
Q Consensus 416 -nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge---~~l~~~l~~Ld~- 490 (1974)
..+-|--..+.+...-.-...+.+ +.++.++.++-++|.|.+..||--++-+|.++....|. +.|...+.-|-.
T Consensus 524 kSwqaRhTgIkivqqIail~Gcsvl-phl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCSVL-PHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcchhh-hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 688886655554443222233333 45688999999999999999999999999999999873 333333332211
Q ss_pred HH--HHH-HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000166 491 VR--RNK-LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 567 (1974)
Q Consensus 491 ~k--k~K-I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~ 567 (1974)
++ +.| +..+++.-+..-+-.- ++-. .=-.+.- +.--.+- .+.
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~eya-~yyTrev---mlil~rE--------f~s--------- 647 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AEYA-SYYTREV---MLILIRE--------FGS--------- 647 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HHHH-HHhHHHH---HHHHHHh--------hCC---------
Confidence 11 111 1111211110000000 0000 0000000 0000000 000
Q ss_pred CCCCcccccCCCCCCCCCCCCCCH------HHHHHHH---hccCcHhHHHhhhhccHHHHHHH----HHHHHHHHHhhhc
Q 000166 568 GSGKQETSKLTEAPEDVEPSEMSL------EEIESRL---GSLIPADTVGQLKSAVWKERLEA----ISSLRQQVEAVQN 634 (1974)
Q Consensus 568 ~~~~~~~s~~~~~~~~~~~~~~s~------Ee~e~~~---~~l~~~~i~~~L~s~~WK~RL~a----~E~l~~~v~~~~~ 634 (1974)
+ ..+|-. +.|.+.- ..++..|++.-++.+=|-.|+++ +..+.+.--+.-.
T Consensus 648 ------------P-----DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 648 ------------P-----DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred ------------C-----hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 0 000000 0000000 12566788889999999999987 3333222111111
Q ss_pred cchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC--CCCccchhhhccchhhccccchhhhHHHHHHHHHHHh
Q 000166 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA 712 (1974)
Q Consensus 635 ~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~--~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~ 712 (1974)
--.+.+++-|.+. .++|-|-|--+.+.+.+..++.+.+ .|..+.....+.+ +|.+|.|-
T Consensus 711 KvG~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidg----------------il~Afqeq 771 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDG----------------ILYAFQEQ 771 (1172)
T ss_pred HhCchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH----------------HHHHHHhc
Confidence 1123455556554 4799999988888888888777643 2333333333333 55666665
Q ss_pred hchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCccHHHHHHHHHHHHHH-----
Q 000166 713 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGAL----- 786 (1974)
Q Consensus 713 ~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~l----- 786 (1974)
+.-+-|+- +.+....++||..+=+ +..++--.... |.|.-|.||..|..|++.+
T Consensus 772 tt~d~vml-------------------~gfg~V~~~lg~r~kpylpqi~stiL~r-Lnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 772 TTEDSVML-------------------LGFGTVVNALGGRVKPYLPQICSTILWR-LNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred ccchhhhh-------------------hhHHHHHHHHhhccccchHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHH
Confidence 44433322 2233344555652111 12333333444 7777777887777776653
Q ss_pred -------HhhhCchhHhhhhcchHHHHHHHHHHHhcCCC-CCCCCCccccccccCcCCCCCCCCCC-CCccccccCCcHH
Q 000166 787 -------HKFVGPDIKGFLADVKPALLSALDAEYEKNPF-EGTVVPKKTVRASESTSSVSSGGSDG-LPREDISGKFTPT 857 (1974)
Q Consensus 787 -------y~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~-~~~p~p~R~~r~~~~~~~~~~~~~d~-lpRvDIs~kit~~ 857 (1974)
-.|+|--|..+|+.+-|..|-.|-.-.--+-. -|- .-. -|--||.+.|||-
T Consensus 832 tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm--------------------~km~pPi~dllPrltPI 891 (1172)
T KOG0213|consen 832 TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM--------------------TKMTPPIKDLLPRLTPI 891 (1172)
T ss_pred hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc--------------------cccCCChhhhcccchHh
Confidence 34566667777766666554444333322110 000 001 1334666668874
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000166 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1974)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1974)
| .++-=|+--..++=|..|...+.-++.+- |-++ .|-.-|+--||-+-..|.+..|.||.+.||.
T Consensus 892 L----knrheKVqen~IdLvg~IadrgpE~v~aR---EWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----- 959 (1172)
T KOG0213|consen 892 L----KNRHEKVQENCIDLVGTIADRGPEYVSAR---EWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----- 959 (1172)
T ss_pred h----hhhHHHHHHHHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-----
Confidence 4 44555666777888888887543333331 2222 2333445679999999999999999999974
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcc-hHHHHHHHHHHHhccCCCCcchhhh
Q 000166 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE-GRKDLFDWLSKQLTGLSGFPDAAHL 1013 (1974)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~-~R~e~l~wL~~~l~~~~~~~~~~~~ 1013 (1974)
-++..++..|+-+.-+.|.+..-++-.+.+.||.=.++|.+..-...|..|.+ |=--.+.|+-++..++. .+....
T Consensus 960 -dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems--kdYiya 1036 (1172)
T KOG0213|consen 960 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS--KDYIYA 1036 (1172)
T ss_pred -HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh--hhHHHH
Confidence 46777888888899999999999999999999988888866655554533221 22334455656554443 466667
Q ss_pred hhh-HhhhccCCChHHHHHHHHHHHHH
Q 000166 1014 LKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1014 ~~p-~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
+.| +-..|+||++--|.-|..++-.+
T Consensus 1037 v~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1037 VTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred hhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 777 44589999999999888766444
No 15
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.0003 Score=87.68 Aligned_cols=279 Identities=15% Similarity=0.174 Sum_probs=203.9
Q ss_pred cchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-----
Q 000166 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----- 968 (1974)
Q Consensus 894 geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g----- 968 (1974)
.++++-|+.|+.+.|.+.-+--+.++..+=..=+-.|-.|.--++++++..|+|+-..||+-+-.+|+.+....-
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 788999999999999999999999999998888888999999999999999999999999999999998887753
Q ss_pred --chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhhHhhhccCCCh-HHHHHHHHHHHHHHHhc
Q 000166 969 --LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAG 1043 (1974)
Q Consensus 969 --l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~--~~~~~~~~p~~~~L~Dr~~-dVRkaA~~~L~~~m~~~ 1043 (1974)
++.+++.+..-+.++ +|+.+.-++.|+.+.+.-.+.. +-...++..+.-|+.|.-. ..+..|+.+-+.+|+.+
T Consensus 246 ~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 233333333333333 6889999999999988665542 2344556668889988877 58888888777777766
Q ss_pred CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchh
Q 000166 1044 GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQD 1123 (1974)
Q Consensus 1044 G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1974)
+.+.-... ++ ...
T Consensus 324 s~~~~~~~---id---~~~------------------------------------------------------------- 336 (675)
T KOG0212|consen 324 SSERLKEE---ID---YGS------------------------------------------------------------- 336 (675)
T ss_pred hhhhhccc---cc---hHH-------------------------------------------------------------
Confidence 54432211 00 000
Q ss_pred hhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChh
Q 000166 1124 FAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203 (1974)
Q Consensus 1124 ~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~ 1203 (1974)
-++- +..++++..-..++++++-+.-.....+.
T Consensus 337 -----------------------------------ii~v------------l~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 337 -----------------------------------IIEV------------LTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred -----------------------------------HHHH------------HHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 1111 12223333344577777777777666777
Q ss_pred hhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHH
Q 000166 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQI 1283 (1974)
Q Consensus 1204 ~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~ 1283 (1974)
.++...|=||--+-.-+.|+.-.|+.+.|+++.++..-=...+| --|+-.|++-.-+-+--++.+=-=|+|++
T Consensus 370 ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~-------~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 370 QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL-------RKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH-------HHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 77776777777776778999999999999999877655444444 56777777777665545666666799999
Q ss_pred hhccCccchHHH
Q 000166 1284 VNFYSATKTLPY 1295 (1974)
Q Consensus 1284 ~~vyp~skvf~~ 1295 (1974)
|...-+.+||.-
T Consensus 443 C~lL~aE~IYr~ 454 (675)
T KOG0212|consen 443 CLLLNAERIYRS 454 (675)
T ss_pred HHHhCHHHHHHH
Confidence 999999999987
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.37 E-value=0.0014 Score=85.45 Aligned_cols=378 Identities=18% Similarity=0.166 Sum_probs=227.5
Q ss_pred hhhhccC--ChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 291 WEGVKAT--KWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 291 ~~~l~s~--KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
-+-+++. +=++|++++..|.-+.. -. |...+.-.+-+.+...|..+-.++-=.+..++.. =......+
T Consensus 10 ~~~~~~~~~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~~~~~l~ 80 (526)
T PF01602_consen 10 AKILNSFKIDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHE----DPELLILI 80 (526)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT----SHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----chhHHHHH
Confidence 3334444 67789999999766432 11 2233344444455555544333333222222221 11247788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh-h
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-Y 446 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~-~ 446 (1974)
++.+..-+.+..+.+|..+..+|-.+... .-.+.+...|...+.|++|-||..++.-+.+.+...+.. +.. +
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~ 153 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDEL 153 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHH
Confidence 99999999999999999888888887643 335567788889999999999999999999999875332 233 7
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHH-------hhcCCHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000166 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERS-------IEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (1974)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge---~~l~~~-------l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~ 516 (1974)
++.+.+++.|+++.|+-+|..++..+ +.-.. ..+..+ +...++--.-++-.++....
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~------------ 220 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA------------ 220 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST------------
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc------------
Confidence 99999999999999999999999888 21111 111111 12233333333333332210
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000166 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1974)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~ 596 (1974)
...+++...
T Consensus 221 -----------------------------------------------------------------------~~~~~~~~~ 229 (526)
T PF01602_consen 221 -----------------------------------------------------------------------PMEPEDADK 229 (526)
T ss_dssp -----------------------------------------------------------------------SSSHHHHHH
T ss_pred -----------------------------------------------------------------------cCChhhhhH
Confidence 001111110
Q ss_pred HHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000166 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1974)
Q Consensus 597 ~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~ 676 (1974)
..+-+.+...|.++++-.+++++.-+...-....-.....+.+++++. =+|.| +.--+++.+..++.....
T Consensus 230 ---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~----s~~~n--vr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 230 ---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS----SSDPN--VRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT----SSSHH--HHHHHHHHHHHHCCHCHH
T ss_pred ---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh----cccch--hehhHHHHHHHhhcccch
Confidence 122245567777999999999999887443332212233455666653 13444 445577777776654311
Q ss_pred CCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccch
Q 000166 677 FPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756 (1974)
Q Consensus 677 fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~ 756 (1974)
+-. .....+ .++..--|.-+|..+-++|..++.......|+.++++++.+...+.++.+++.-++.+...|. -+.
T Consensus 301 ~v~-~~~~~~-~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~---~~~ 375 (526)
T PF01602_consen 301 AVF-NQSLIL-FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP---PDA 375 (526)
T ss_dssp HHG-THHHHH-HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG---SSH
T ss_pred hhh-hhhhhh-heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC---chH
Confidence 111 111111 222334455678899999999999999999999999997566688899999999999988883 344
Q ss_pred HhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000166 757 KDLIDFCKDTGLQSSAAATRNATIKLL 783 (1974)
Q Consensus 757 K~lI~~~k~~~L~~sN~~VR~aAi~Ll 783 (1974)
+..++.+-+. +...+..|+..++..+
T Consensus 376 ~~~v~~l~~l-l~~~~~~~~~~~~~~i 401 (526)
T PF01602_consen 376 EWYVDTLLKL-LEISGDYVSNEIINVI 401 (526)
T ss_dssp HHHHHHHHHH-HHCTGGGCHCHHHHHH
T ss_pred HHHHHHHHHh-hhhccccccchHHHHH
Confidence 5555655555 4444444444444433
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.32 E-value=2.9e-05 Score=107.18 Aligned_cols=242 Identities=19% Similarity=0.198 Sum_probs=164.4
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC--chhH
Q 000166 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (1974)
Q Consensus 718 V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G--~~l~ 795 (1974)
.++.|++.+ ++.+|.||..++.+|... |- ...++.+..+ |.+.|+.||.+|+..|+.+-.... +.|.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 455677664 799999999999998764 32 3456666677 999999999999999876622111 1223
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHH
Q 000166 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1974)
Q Consensus 796 ~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe 875 (1974)
..|++-.|-.....=.-+.... ..-+..|+..+.|++|-+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~----------------------------------~~~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALR----------------------------------AGDAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhc----------------------------------cCCHHHHHHHhcCCCHHHHHHHHH
Confidence 3332222211111111111100 000235778899999999999999
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHH
Q 000166 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1974)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~a 955 (1974)
++..+= + ..+|...+.|.|.-|...++..++.+...-. ..++.++..++|..+.||.+
T Consensus 737 aL~~~~-------------~-~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD-------------D-VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc-------------C-cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHH
Confidence 987531 1 2356678999999998888887776644311 12677888999999999999
Q ss_pred HHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHH
Q 000166 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1974)
Q Consensus 956 a~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~ 1035 (1974)
|+.+|..+... ....+.+..+|.++ ++.+|.++..-|.+ +.. ...+.+++.+|.|.+.+||++|-.+
T Consensus 795 A~~aLg~~g~~---~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~----l~~----~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGCP---PDDVAAATAALRAS--AWQVRQGAARALAG----AAA----DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCCc---chhHHHHHHHhcCC--ChHHHHHHHHHHHh----ccc----cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999877432 23345677888865 57889988877753 221 2344678888999999999999999
Q ss_pred HHHH
Q 000166 1036 IVEI 1039 (1974)
Q Consensus 1036 L~~~ 1039 (1974)
|+.+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9885
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=0.00016 Score=91.91 Aligned_cols=310 Identities=15% Similarity=0.184 Sum_probs=201.1
Q ss_pred chhhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCC-hhHHHHHHHHHHHHHHhhCCc
Q 000166 124 EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD-QNVRASSKGLTLELCRWIGKD 202 (1974)
Q Consensus 124 e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~d-k~VR~ea~~L~velyrwlG~~ 202 (1974)
.+.+.+.+.+.+.++.=.-.-...+...+...++.+|...+..-.++..+-+...+.+ ...|+.+.--....+..+|+.
T Consensus 130 ~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~ 209 (569)
T KOG1242|consen 130 LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP 209 (569)
T ss_pred cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC
Confidence 3444555555555553333445666667777778888877777777777777766654 344557777777777777731
Q ss_pred ---hhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcc
Q 000166 203 ---PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279 (1974)
Q Consensus 203 ---~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pv 279 (1974)
-+.+.| . .. |.+. |...+ .+|..+.. +...-+.. +++|
T Consensus 210 ~EPyiv~~l-p----~i-------l~~~-~d~~~--~Vr~Aa~~-a~kai~~~-----------------~~~~------ 250 (569)
T KOG1242|consen 210 FEPYIVPIL-P----SI-------LTNF-GDKIN--KVREAAVE-AAKAIMRC-----------------LSAY------ 250 (569)
T ss_pred CCchHHhhH-H----HH-------HHHh-hccch--hhhHHHHH-HHHHHHHh-----------------cCcc------
Confidence 122322 1 00 0111 01111 12211110 00000000 1111
Q ss_pred cccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc
Q 000166 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT 358 (1974)
Q Consensus 280 dIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~ 358 (1974)
-|=.-|| .....+...||+++..+|+-|-.+.. .|+--..-..+|+..|.+++.|+...|--.+.+|+..+..-...
T Consensus 251 aVK~llp--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN 328 (569)
T KOG1242|consen 251 AVKLLLP--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN 328 (569)
T ss_pred hhhHhhh--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc
Confidence 1111233 24455655699999999999887765 34433445778999999999999999999999999999998884
Q ss_pred ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc------CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 359 ~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~------~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
+ -+..++|.+++.+.|-+..+.+ |++.+.... .-+|+-+++.+.-++....-.+|..|..-+-..-.
T Consensus 329 ~---dI~~~ip~Lld~l~dp~~~~~e----~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 329 P---DIQKIIPTLLDALADPSCYTPE----CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred H---HHHHHHHHHHHHhcCcccchHH----HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 3 3778899999999999977764 555554421 13466677778889988887777665554433332
Q ss_pred hC-ChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 433 TS-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 433 ~~-~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
-. .+..+.+++..++|.+-+.+.|..|+||.-++.+|+++.+.+|++.+
T Consensus 402 LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 22 44556677888999999999999999999999999999999998765
No 19
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0001 Score=99.70 Aligned_cols=514 Identities=17% Similarity=0.174 Sum_probs=309.2
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 404 ~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~--~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
+.+.+.....+.||..|...+-||--.+.... +... -.++.+.-.++..|.|.++=+.|-|...||.++-+-|.. +
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~-l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~-~ 896 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVV-LMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS-L 896 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhh-hccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch-h
Confidence 34455567779999999999999998887643 2222 234778899999999999999999999999887765532 2
Q ss_pred HHHhhcCCHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCC
Q 000166 482 ERSIEKLDDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (1974)
Q Consensus 482 ~~~l~~Ld~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~ 557 (1974)
|+.-+...+ +|.+. . .+-.... .- .
T Consensus 897 ----------k~~LV~sL~~tl~~Gkr~-------~------------~~vs~eT--el-----F--------------- 925 (1702)
T KOG0915|consen 897 ----------KKSLVDSLVNTLTGGKRK-------A------------IKVSEET--EL-----F--------------- 925 (1702)
T ss_pred ----------HHHHHHHHHHHHhccccc-------c------------ceeccch--hc-----c---------------
Confidence 222222222 22100 0 0000000 00 0
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH---Hhhhh--ccHHHHHHHHHHHHHHHHh-
Q 000166 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV---GQLKS--AVWKERLEAISSLRQQVEA- 631 (1974)
Q Consensus 558 ~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~---~~L~s--~~WK~RL~a~E~l~~~v~~- 631 (1974)
..|+-+..+ .+ -.--+.-|+...++++-.+|++ -+|.. +-|.-|+.|.=.+....+.
T Consensus 926 ---q~G~Lg~Tp---~G-----------g~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a 988 (1702)
T KOG0915|consen 926 ---QEGTLGKTP---DG-----------GKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA 988 (1702)
T ss_pred ---cCCcCCCCC---CC-----------CcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH
Confidence 001100000 00 0012578999999999999996 44443 4499999988777655544
Q ss_pred hhccchhH-HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHHH
Q 000166 632 VQNLDQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTT 708 (1974)
Q Consensus 632 ~~~~~~~~-~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~ 708 (1974)
.+...+.. +++-|.... =-|.|..|++.+-.|-..+..-..........-++..+..-+++. ++|+.++-+|..
T Consensus 989 ~~kl~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred HHhhhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 33333332 333343331 158999999999999998876434455666677888888888886 789998888877
Q ss_pred HHHhhchHhHHHHH-------HHhhhhcCC-h-hhHHHHHHHHHHHHHHhccC--ccc----hHhHHHHHhhhcCCCccH
Q 000166 709 FSEAVGPGFIFERL-------YKIMKDHKN-P-KVLSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAA 773 (1974)
Q Consensus 709 ~aE~~~p~~V~~~l-------~~~~~~~Kn-P-Kv~ae~l~wl~~ai~eFG~~--~l~----~K~lI~~~k~~~L~~sN~ 773 (1974)
+-..-..+-+.+++ +..+-..|- - ++-..++..++.++-.-+-. ... +..++.|+-+-|..|+=+
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence 76655555444433 333322221 1 11122344444444433321 111 235667776656779999
Q ss_pred HHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC----CccccccccCcCCCCCCCCCCCCccc
Q 000166 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV----PKKTVRASESTSSVSSGGSDGLPRED 849 (1974)
Q Consensus 774 ~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~----p~R~~r~~~~~~~~~~~~~d~lpRvD 849 (1974)
.||..+|+++..|-++-|..|++|+.++-|.++.....- + |-. ..|- .+.+.+ .. |. -|..
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~l-E------~~vLnYls~r~--~~~e~e----al-Dt-~R~s 1210 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSEL-E------PQVLNYLSLRL--INIETE----AL-DT-LRAS 1210 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcccc-c------hHHHHHHHHhh--hhhHHH----HH-HH-HHHh
Confidence 999999999999999999999999999999998765321 0 000 0111 000000 00 00 0001
Q ss_pred cccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcCh
Q 000166 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGP 928 (1974)
Q Consensus 850 Is~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~ 928 (1974)
+.. +++= +|+|+..|+ .|--..++|+.+-|..-+ +-.|-+=..-++.+|..|+.-+|.
T Consensus 1211 ~ak----------sspm-------meTi~~ci~----~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~ 1269 (1702)
T KOG0915|consen 1211 AAK----------SSPM-------METINKCIN----YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS 1269 (1702)
T ss_pred hhc----------CCcH-------HHHHHHHHH----hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc
Confidence 111 1111 344444442 222223566666665544 333444445677888889999999
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc
Q 000166 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1974)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~ 1008 (1974)
...+|+.-++-..+-.++|...++|.+.-.|+--.+.....+.+...+ ..++.|+- ....+
T Consensus 1270 emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi--------------e~~l~~~l---~k~es-- 1330 (1702)
T KOG0915|consen 1270 EMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI--------------ETLLADLL---GKDES-- 1330 (1702)
T ss_pred ccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH--------------HHHHHHHh---ccCCC--
Confidence 999999999999999999999999999988888777766655543322 23444433 22221
Q ss_pred chhhhhhhHhhhccCCChHHHH-HHHHHHHHHHHhcCHH
Q 000166 1009 DAAHLLKPASIAMTDKSSDVRK-AAEACIVEILRAGGQE 1046 (1974)
Q Consensus 1009 ~~~~~~~p~~~~L~Dr~~dVRk-aA~~~L~~~m~~~G~~ 1046 (1974)
.-+..|.-+.. +.-.+.|+=+ .|+++||.+....-|+
T Consensus 1331 ~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1331 LKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred ccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence 11333444444 6666777766 6778888776666666
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.17 E-value=0.00012 Score=101.28 Aligned_cols=260 Identities=19% Similarity=0.156 Sum_probs=166.9
Q ss_pred cchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHH
Q 000166 695 DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774 (1974)
Q Consensus 695 D~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~ 774 (1974)
|+.+|..|.+.|..+. +.-++..|... .+..++-|+..++.-|..+.+... +.. .+... |++.|+.
T Consensus 634 d~~VR~~Av~~L~~~~----~~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~----~~~----~L~~~-L~~~d~~ 699 (897)
T PRK13800 634 DPGVRRTAVAVLTETT----PPGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLP----PAP----ALRDH-LGSPDPV 699 (897)
T ss_pred CHHHHHHHHHHHhhhc----chhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccC----chH----HHHHH-hcCCCHH
Confidence 3567777776666653 23345555554 478888888888777655432111 112 23344 7788888
Q ss_pred HHHHHHHHHHHHHhhhCch--hHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccc
Q 000166 775 TRNATIKLLGALHKFVGPD--IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1974)
Q Consensus 775 VR~aAi~Ll~~ly~~~G~~--l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~ 852 (1974)
||.+|+..|+.+.. |+. +...|.|..|.+....=.-..++ ..
T Consensus 700 VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~-----------------------------~~----- 743 (897)
T PRK13800 700 VRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSV-----------------------------DD----- 743 (897)
T ss_pred HHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcc-----------------------------cC-----
Confidence 99988888887642 211 11222222222111111111110 00
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000166 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1974)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1974)
.+.++.-+.|.+|-+|.++.+.|..+-... ..-...|...+.|.+..|...|+..++.+ |.+
T Consensus 744 --~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~~--- 805 (897)
T PRK13800 744 --VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAEL----GCP--- 805 (897)
T ss_pred --cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhc----CCc---
Confidence 134667799999999999999998765321 22356677778999988888888877665 211
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000166 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1974)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~ 1012 (1974)
..+.+.++..|.|....||.+|..+|... +-..-++.+...|.++ ++.+|.++..=|.+. ... ..
T Consensus 806 --~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~----~~~---~~ 870 (897)
T PRK13800 806 --PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW----PGD---PA 870 (897)
T ss_pred --chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----CCC---HH
Confidence 12335688999999999999999999654 4455667888888876 588999998887752 111 12
Q ss_pred hhhhHhhhccCCChHHHHHHHHHHH
Q 000166 1013 LLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
...++...|+|.+++||+.|..+|.
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 3344667889999999999999885
No 21
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.12 E-value=0.035 Score=71.40 Aligned_cols=337 Identities=20% Similarity=0.257 Sum_probs=237.8
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~-F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~---- 397 (1974)
...|++.+..+|..--..|-+.|++.|+.||.-|..- =.+-..-+-..+.|.++|-=+.|.-.+..||-+|+...
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 4578888888999888899999999999999999743 11233444556789999999999999999999998851
Q ss_pred -CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHH---HhhhCCCCHHHHHHHHHHHHHHH
Q 000166 398 -CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 398 -~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l---~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
.-++.++++.+...|+||.-.|-..+..++.+.-...+.-.. .+.++-+| +..|---+.++|.+|.+.||-|.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~---aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS---AREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 124678999999999999999999999999988765543221 14445544 45566788999999999999999
Q ss_pred HHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCC
Q 000166 474 KSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552 (1974)
Q Consensus 474 k~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~ 552 (1974)
+.+| .+.+..++++|+- +|.-.... +.-.-+ -
T Consensus 954 kaIGPqdVLatLlnnLkv------qeRq~Rvc----TtvaIa-------------------------------------I 986 (1172)
T KOG0213|consen 954 KAIGPQDVLATLLNNLKV------QERQNRVC----TTVAIA-------------------------------------I 986 (1172)
T ss_pred HhcCHHHHHHHHHhcchH------HHHHhchh----hhhhhh-------------------------------------h
Confidence 9999 5667777888853 33322210 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 000166 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV 632 (1974)
Q Consensus 553 ~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~ 632 (1974)
+ . +...++
T Consensus 987 V------------------------a---E~c~pF--------------------------------------------- 994 (1172)
T KOG0213|consen 987 V------------------------A---ETCGPF--------------------------------------------- 994 (1172)
T ss_pred h------------------------h---hhcCch---------------------------------------------
Confidence 0 0 000000
Q ss_pred hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccch--hhhHHHHHHHHHH
Q 000166 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFS 710 (1974)
Q Consensus 633 ~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~a 710 (1974)
.+|--++ -.+.-.|..||+.+|..++.+.+.-+..++..++.++|-+-|-+.|.- .|..+..++.-++
T Consensus 995 -------tVLPalm---neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 995 -------TVLPALM---NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred -------hhhHHHH---hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 0111111 124556888999999999999998888899999999999999999854 5777777777665
Q ss_pred HhhchHhH----HHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000166 711 EAVGPGFI----FERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1974)
Q Consensus 711 E~~~p~~V----~~~l~~~~~~---~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll 783 (1974)
=- .+++- +-+|+..++- --+|-|+......|-.+ -. .+.+..+..|+-. ||=|.-..||..=-.++
T Consensus 1065 Lg-~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~----r~-~Lg~~~~~~Y~~Q-GLFHParkVR~~yw~vy 1137 (1172)
T KOG0213|consen 1065 LG-VPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGL----RV-ALGPQAMLKYCLQ-GLFHPARKVRKRYWTVY 1137 (1172)
T ss_pred cC-CCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH----HH-HhchHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 43 22222 2233333222 24677776555443333 22 2445688999987 59999999999999999
Q ss_pred HHHHhhhCchhHhhh
Q 000166 784 GALHKFVGPDIKGFL 798 (1974)
Q Consensus 784 ~~ly~~~G~~l~~~l 798 (1974)
-.||.+-.++|-.++
T Consensus 1138 n~my~~~~dalv~~y 1152 (1172)
T KOG0213|consen 1138 NSMYHGSQDALVACY 1152 (1172)
T ss_pred HhHhhcccchhhhcc
Confidence 999998888888877
No 22
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.08 E-value=0.13 Score=68.38 Aligned_cols=1063 Identities=16% Similarity=0.180 Sum_probs=541.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHH-hhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc--------
Q 000166 289 GFWEGVKATKWSERKDAVAELTK-LAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-------- 358 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~-L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~-------- 358 (1974)
.+.++|.++.=--|--|...|.+ |-+ ..++..+..-+++++|-+.+.|+|--|..+|.+|+|-|++..+.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 46677888777778899999876 433 55666777899999999999999999999999999966654331
Q ss_pred --------------------------cccc-----chhhhHHHHHHHhccCCH---------------------------
Q 000166 359 --------------------------HFSG-----SSRFLLPVLLEKLKEKKP--------------------------- 380 (1974)
Q Consensus 359 --------------------------~F~~-----y~~~~l~~lLeklKEKK~--------------------------- 380 (1974)
+..| |+..+++.|+-+|+.--.
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll 168 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLL 168 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccC
Confidence 1222 677777777777765322
Q ss_pred --------------------HHHHHHHHHHHHHHHhcCCC--hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh-
Q 000166 381 --------------------TVAESLTQTLQAMHKAGCLN--LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA- 437 (1974)
Q Consensus 381 --------------------~V~eA~~~aLda~~~~~~~~--l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~- 437 (1974)
.||.-+..||--++.+ |-+ +.+++|++...|.+. -....++-...|+...-+.
T Consensus 169 ~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~-~~~~ly~~li~~Ll~~L~~~---~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 169 PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS-CNRDLYVELIEHLLKGLSNR---TQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhccCCC---CchHHHHHHHHHHHHHHHHh
Confidence 2222223333333332 111 223444444444332 1222222223333211000
Q ss_pred --HHhHhhhhhHHHHHhhh---CCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000166 438 --AVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1974)
Q Consensus 438 --~~~~~~k~~~~~l~k~l---~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1974)
.+...+.-++|.+..-. +.-+-|.|+.+.++++.|...-- +.+.++...+-..-..+| .= .
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp-~ei~p~~pei~~l~l~yi----sY---D------ 310 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP-KEILPHVPEIINLCLSYI----SY---D------ 310 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh-hhhcccchHHHHHHHHHh----cc---C------
Confidence 01111234566666666 88889999999999999987755 335555543322211111 10 0
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC-CCCCCH
Q 000166 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVE-PSEMSL 591 (1974)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~-~~~~s~ 591 (1974)
|.=- ..+.-.. ...-.++.+|.+ ..+.|.
T Consensus 311 -------------PNy~--------------------------------yd~~eDe-----d~~~~ed~eDde~~deYsD 340 (1233)
T KOG1824|consen 311 -------------PNYN--------------------------------YDTEEDE-----DAMFLEDEEDDEQDDEYSD 340 (1233)
T ss_pred -------------CCCC--------------------------------CCCccch-----hhhhhhccccchhcccccc
Confidence 0000 0000000 000000000000 122232
Q ss_pred HHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh--cCCCccchHHHHHHHHHHHHH
Q 000166 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM--LPGWSEKNVQVQQQVIEVINY 669 (1974)
Q Consensus 592 Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~--~PgwkesNfqV~~k~leil~~ 669 (1974)
| .+-.||.|-+|..-+...|.+-.+. ...+.+.+.- --+|||--=.|-..+|+++..
T Consensus 341 D------------------eD~SWkVRRaAaKcl~a~IsSR~E~---L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 341 D------------------EDMSWKVRRAAAKCLEAVISSRLEM---LPDFYQTLGPALISRFKEREENVKADVFHAYIA 399 (1233)
T ss_pred c------------------cchhHHHHHHHHHHHHHHHhccHHH---HHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2 2446999999999888777663221 1122222210 014777666677788888877
Q ss_pred HHHhcCCCCccchhhhccchhhccccch-hhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHH
Q 000166 670 LAATATKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1974)
Q Consensus 670 la~~~~~fs~~~~~~~l~~lveKlgD~K-~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~e 748 (1974)
+..+-+...+.. +=+.-.|. |.+| .+..-.+-.. +++.-+-+.+ ..|+-|.+..|+..+...|.-
T Consensus 400 ll~qt~~~~~~~---~d~d~~e~-~g~~s~~~~L~~~~~---------~iVkai~~ql-r~ks~kt~~~cf~lL~eli~~ 465 (1233)
T KOG1824|consen 400 LLKQTRPVIEVL---ADNDAMEQ-GGTPSDLSMLSDQVP---------LIVKAIQKQL-REKSVKTRQGCFLLLTELINV 465 (1233)
T ss_pred HHHcCCCCcccc---cCchhhhc-cCCccchHHHHhhhH---------HHHHHHHHHH-hhccccchhhHHHHHHHHHHh
Confidence 765432211111 11111333 3333 1111122222 3333333443 477778999999999998863
Q ss_pred ---hccCccc--hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000166 749 ---FGVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1974)
Q Consensus 749 ---FG~~~l~--~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~ 823 (1974)
.|...++ +..++--+.+- |+-.+.+-.+ |+-+|-.++ . .+|
T Consensus 466 lp~~l~~~~~slvpgI~~~l~Dk---Ssss~~ki~~---L~fl~~~L~--------s------------------~~p-- 511 (1233)
T KOG1824|consen 466 LPGALAQHIPSLVPGIIYSLNDK---SSSSNLKIDA---LVFLYSALI--------S------------------HPP-- 511 (1233)
T ss_pred CcchhhhcccccchhhhhhcCCc---cchHHHHHHH---HHHHHHHHh--------c------------------CCh--
Confidence 3333332 33444333321 2222222222 222232111 0 011
Q ss_pred CccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCC-------Cccch
Q 000166 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-------GTGEL 896 (1974)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~-------~~geL 896 (1974)
.++-- -.+.+++-+..-.+++=+|+--|||--.++++.-- ..++|+ .++++
T Consensus 512 -~~fhp--------------------~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi-rpl~~~~~~d~~~~v~~m 569 (1233)
T KOG1824|consen 512 -EVFHP--------------------HLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI-RPLQPPSSFDASPYVKTM 569 (1233)
T ss_pred -hhccc--------------------chhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh-cccCCCccCCCChhHHHH
Confidence 11100 01234555777788999999999999999998643 556662 14667
Q ss_pred HHHHhhhc--cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh-------c
Q 000166 897 FGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA-------V 967 (1974)
Q Consensus 897 ~~aLk~Rl--~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~-------~ 967 (1974)
..+--+|| +|+..-|.--|..|+|++-..+|---+-....++|-++++||+ ...|=+|..|++-++.+ .
T Consensus 570 ~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~ 647 (1233)
T KOG1824|consen 570 YDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSP 647 (1233)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhh
Confidence 77777777 7999999999999999999999933344566666666666664 56788899999988865 2
Q ss_pred cchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC--c-chhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcC
Q 000166 968 HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--P-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1974)
Q Consensus 968 gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~--~-~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1974)
-+.++++.++.+|. +.+-.+|.+.+.++.+-+...... . .+..++.-+-..+.+..--|-..|-++|-+++..-.
T Consensus 648 ~l~~il~~l~~flr--K~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 648 VLTEILPELASFLR--KNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 35566777788876 223457888888887766665331 1 233334445555667777777777777777665432
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhh
Q 000166 1045 QETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDF 1124 (1974)
Q Consensus 1045 ~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1124 (1974)
.-- -+.+....+.|...+...- -+|.
T Consensus 726 s~l-----~~~~~~iL~~ii~ll~Spl--------------------------------------lqg~----------- 751 (1233)
T KOG1824|consen 726 SSL-----LKISNPILDEIIRLLRSPL--------------------------------------LQGG----------- 751 (1233)
T ss_pred HHH-----HHHhhhhHHHHHHHhhCcc--------------------------------------ccch-----------
Confidence 211 1111122222332221100 0000
Q ss_pred hhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHh---hhHHHHHhhcccCHHHHHHHHHHHHHhcCCC
Q 000166 1125 AVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKY---FREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1201 (1974)
Q Consensus 1125 ~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~---~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~ 1201 (1974)
.-+..+.+ ++.+. .-.+|.-+++..+.-.++|. ....++.+- |..--+.+.+|+...++.
T Consensus 752 -al~~~l~~--------f~alV----~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa----~~siA~cvA~Lt~~~~~~ 814 (1233)
T KOG1824|consen 752 -ALSALLLF--------FQALV----ITKEPDLDYISLLSLLTAPVYEQVTDGLHKQA----YYSIAKCVAALTCACPQK 814 (1233)
T ss_pred -HHHHHHHH--------HHHHH----hcCCCCccHHHHHHHHcCCcccccccchhHHH----HHHHHHHHHHHHHhcccc
Confidence 00000000 00000 00112223333222222221 111122222 111234555666666543
Q ss_pred hhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHH
Q 000166 1202 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 1281 (1974)
Q Consensus 1202 ~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~ 1281 (1974)
..++.. |. .--|...|.+.-.|+|-+|. |.+.||+.-..-+.-|--.+++-+|.+.|.|+..----+-
T Consensus 815 s~s~a~------kl-~~~~~s~~s~~~ikvfa~Ls-----lGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALG 882 (1233)
T KOG1824|consen 815 SKSLAT------KL-IQDLQSPKSSDSIKVFALLS-----LGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALG 882 (1233)
T ss_pred chhHHH------HH-HHHHhCCCCchhHHHHHHhh-----hhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhh
Confidence 333332 22 12334578888889988888 8999999888777777778888899999999986544333
Q ss_pred HHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcc--ccccchHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000166 1282 QIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI--SGQLKSLQIVASLTAERDGEIRKAALNTLATGY 1359 (1974)
Q Consensus 1282 ~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v--~~~~Kal~~iA~~i~drD~~VR~AALn~l~~~Y 1359 (1974)
.+. +=.-++..|||++-..+---||=.= |--+-..|..--+.- ..-.|-....-++++--.-.+||--=.|||.+-
T Consensus 883 sl~-vgnl~~yLpfil~qi~sqpk~QyLL-LhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~ 960 (1233)
T KOG1824|consen 883 SLA-VGNLPKYLPFILEQIESQPKRQYLL-LHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV 960 (1233)
T ss_pred hhh-cCchHhHHHHHHHHHhcchHhHHHH-HHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH
Confidence 332 2234677889888776554443211 111111122211110 011223344455555555556777777777554
Q ss_pred HHhchhHHHHhccCCHHHHhhHHHHHHHhHHhhhhhccCCCchhhHhhhhhccccCCCccccccccccccCCcccccccC
Q 000166 1360 KILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNY 1439 (1974)
Q Consensus 1360 ~~~Gd~v~k~vg~ls~k~~smLeer~kr~~k~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1439 (1974)
.+.-+.++ =.|+.+... +.|. .|.++ ++ .-.|
T Consensus 961 l~epesLl-----------pkL~~~~~S----------~a~~-----~rs~v-----------------vs-----avKf 992 (1233)
T KOG1824|consen 961 LIEPESLL-----------PKLKLLLRS----------EASN-----TRSSV-----------------VS-----AVKF 992 (1233)
T ss_pred hCChHHHH-----------HHHHHHhcC----------CCcc-----hhhhh-----------------hh-----eeee
Confidence 44444432 222222210 1110 00000 00 0000
Q ss_pred CCcccccccccCcccccCCCCCCChhHHHhhhcCCChhhHHHhhHHHHHHHhhhcCCCCchhHHHHHHhHHHHHHHHHHH
Q 000166 1440 GHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANK 1519 (1974)
Q Consensus 1440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ve~lk~i~~~l~~~~~~~~~~~~~~l~~~~d~lv~~l~~~ 1519 (1974)
.-. ..|++-.. .--..+...+..+...|.++...++-.+....-. .|. .+.+++...=..+..= ..
T Consensus 993 sis-------d~p~~id~-~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahN---Kps--lIrDllpeLLp~Ly~e-Tk 1058 (1233)
T KOG1824|consen 993 SIS-------DQPQPIDP-LLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHN---KPS--LIRDLLPELLPLLYSE-TK 1058 (1233)
T ss_pred eec-------CCCCccCH-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHcc---CHh--HHHHHHHHHHHHHHHh-hh
Confidence 000 00110000 0001233456677888888888888776644433 221 2333332211111110 01
Q ss_pred HHHHhh-hcccC-------cchhhhHHHHHHHHHHhccHHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 000166 1520 VAKTFD-FSLTG-------ASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALN 1591 (1974)
Q Consensus 1520 ~~~~f~-~~~~~-------~~~r~~k~ll~~L~~~f~~~~La~~~s~~~L~~Ll~~Ll~~Lld~~~~~~~dg~~l~k~lN 1591 (1974)
++.-.. ...|| ...-+-|...-+|+++.+.. ++.-.+. +++..+-+ .++| +.-+|-+|
T Consensus 1059 vrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdsc-----ld~~dit----~Fl~~~~~----GL~D-hydiKmlt 1124 (1233)
T KOG1824|consen 1059 VRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSC-----LDRLDIT----EFLNHVED----GLED-HYDIKMLT 1124 (1233)
T ss_pred hhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhh-----hhhccHH----HHHHHHHh----hcch-hhHHHHHH
Confidence 111111 11222 23444455667776655421 1111122 22333322 1222 36789999
Q ss_pred HHHHHHhhcCCCcchHHHHHHhhccCCCCCCCCCCCchhhhhhchhhhHHHHHHHHHhhhhhhhhccCCChhHHHHHHHH
Q 000166 1592 VLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHV 1671 (1974)
Q Consensus 1592 ~l~lriLe~~~~t~~f~ALi~LL~~~~~~~~~~~~~~~~~~~~~~kf~eLvmKCLwKltK~l~~~i~~ld~d~iL~~Ih~ 1671 (1974)
.+|+--|.++-+..+.--+=+++......+.--+..+..-.+ -.|--| +.+--.|.+-.| .+|++++...++.+...
T Consensus 1125 ~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE-~ek~~e-LkRSAlRav~~L-~~ip~v~~np~~~df~s 1201 (1233)
T KOG1824|consen 1125 FLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQE-FEKQDE-LKRSALRAVAAL-LTIPEVEKNPQFSDFES 1201 (1233)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHh-HHHHHH-HHHHHHHHHHHH-hcccccccChHHHHHHH
Confidence 999999999999888877666655432111000111111111 124344 456666777677 67888898999988877
Q ss_pred HHHhhCh
Q 000166 1672 YLQELGM 1678 (1974)
Q Consensus 1672 Fl~~~p~ 1678 (1974)
=++.-|+
T Consensus 1202 qik~~pe 1208 (1233)
T KOG1824|consen 1202 QIKSNPE 1208 (1233)
T ss_pred HhhcChh
Confidence 7777553
No 23
>PTZ00429 beta-adaptin; Provisional
Probab=98.03 E-value=0.0067 Score=81.64 Aligned_cols=348 Identities=14% Similarity=0.165 Sum_probs=208.5
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhhhhc-CChhhHHHHHHHHHHHHhhch----hhhHHH
Q 000166 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA----VDVFLD 131 (1974)
Q Consensus 57 ~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK~L~-~r~ktk~~a~e~~l~~vE~e~----~~~v~e 131 (1974)
+.|-+.|.|...+--||-++..+- .....+. +-.-+.|||+ ..|-.+..|.-|++.+..... ...+++
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir------~~~i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~ 182 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIR------VSSVLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKK 182 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC------cHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHH
Confidence 344556666666555555442211 0111111 2223578887 468888888888888765422 124667
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHhhCCC-------------------------c------------cChhHHHhhch
Q 000166 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAK-------------------------I------------IPPKRILKMLP 174 (1974)
Q Consensus 132 ~ll~~~~~K~PKvvaaai~~l~~~l~~FG~k-------------------------v------------v~~K~ilk~l~ 174 (1974)
.|...+..++|-|++.|+.++.++-...+-. + -....|+..+-
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~ 262 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVL 262 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 7888899999999999999998885432200 0 00234777777
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchh--hhHHhHHhhhhhccc
Q 000166 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKI--RAEQDKELGQELISE 252 (1974)
Q Consensus 175 ~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~--Rs~q~~~~~~~a~~~ 252 (1974)
+.+.|+|.+|-=+|.+++..+...+.++.++ ..+..+++.++. | ....+-.||+ |.-..-..
T Consensus 263 ~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~-~~~~rl~~pLv~-L-------~ss~~eiqyvaLr~I~~i~~------- 326 (746)
T PTZ00429 263 PRMSHQNPAVVMGAIKVVANLASRCSQELIE-RCTVRVNTALLT-L-------SRRDAETQYIVCKNIHALLV------- 326 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHHHHH-h-------hCCCccHHHHHHHHHHHHHH-------
Confidence 8888999999999999988776655444332 233445544432 1 1122334443 22211000
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHH
Q 000166 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKK 332 (1974)
Q Consensus 253 ~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk 332 (1974)
..| +++..-- .-|+-...++.- .|.+.||-|..|+. +.|..++++.|+.
T Consensus 327 -----------------~~P-------~lf~~~~-~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-----e~Nv~~IL~EL~e 375 (746)
T PTZ00429 327 -----------------IFP-------NLLRTNL-DSFYVRYSDPPF-VKLEKLRLLLKLVT-----PSVAPEILKELAE 375 (746)
T ss_pred -----------------HCH-------HHHHHHH-HhhhcccCCcHH-HHHHHHHHHHHHcC-----cccHHHHHHHHHH
Confidence 001 1111111 247777777765 79999999988863 3567899999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHH-------------------
Q 000166 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM------------------- 393 (1974)
Q Consensus 333 ~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~------------------- 393 (1974)
.+.|.+..++..++++|+.+|..+ ...+..++..|++-+..+-.-|.+++ ..+-.+
T Consensus 376 Ya~d~D~ef~r~aIrAIg~lA~k~----~~~a~~cV~~Ll~ll~~~~~~v~e~i-~vik~IlrkyP~~~il~~L~~~~~~ 450 (746)
T PTZ00429 376 YASGVDMVFVVEVVRAIASLAIKV----DSVAPDCANLLLQIVDRRPELLPQVV-TAAKDIVRKYPELLMLDTLVTDYGA 450 (746)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHHCccHHHHHHHHHhhcc
Confidence 999999999999999999999664 44566677777766655433333222 112111
Q ss_pred ----------------HHhcCCChh---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHH-hh
Q 000166 394 ----------------HKAGCLNLV---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICM-EC 453 (1974)
Q Consensus 394 ----------------~~~~~~~l~---~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~-k~ 453 (1974)
.+| |.-++ ++++.+...+....+.||.+++.-..+++-..+... +..+..++ .+
T Consensus 451 ~~i~e~~AKaaiiWILGEy-~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~-----~~~l~~vL~~~ 524 (746)
T PTZ00429 451 DEVVEEEAKVSLLWMLGEY-CDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM-----EPQLNRVLETV 524 (746)
T ss_pred cccccHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHHH
Confidence 112 21121 233333333345678899999998888887665322 22233333 44
Q ss_pred h-CCCCHHHHHHHHHHH
Q 000166 454 L-NDGTPEVRDAAFSVL 469 (1974)
Q Consensus 454 l-~Ds~~~VR~aA~~~l 469 (1974)
. +|.++||||-|+.-.
T Consensus 525 t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 525 TTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HhcCCChhHHHHHHHHH
Confidence 3 568999999999643
No 24
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=0.014 Score=78.16 Aligned_cols=533 Identities=16% Similarity=0.126 Sum_probs=290.6
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~ 402 (1974)
--+|+..+...+ |.|.-|...++.=++.+..--+ -..|..+++|++.--.-.....||+++.+++..+... ++=.
T Consensus 119 r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~--~~~~ 193 (759)
T KOG0211|consen 119 RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG--LPKE 193 (759)
T ss_pred hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh--cChH
Confidence 466777777777 8887777666665555555433 2356788888888888888889999999999999875 3333
Q ss_pred hhHHHHHHHhhcCCchh-----HHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 403 DVVEDVKTSVKNKVPLV-----RSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 403 ~~~e~i~~al~~KnP~v-----k~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
.. .+...++-.+.... |.-....+..+....+...+ -+.+.|..-....|..+.||.+++.-+|.+.+.++
T Consensus 194 ~~-~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~ 269 (759)
T KOG0211|consen 194 KL-REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE 269 (759)
T ss_pred HH-HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH
Confidence 33 33333333344333 44455555555544442222 24567788888999999999999999999999988
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCC
Q 000166 478 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (1974)
Q Consensus 478 e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~ 557 (1974)
...... .+.+....-+.+ -. ..++--+ ..+
T Consensus 270 ~~~~~s---~v~~~~~~L~~D---dq----------------------------dsVr~~a--~~~-------------- 299 (759)
T KOG0211|consen 270 SEIVKS---EVLPTLIQLLRD---DQ----------------------------DSVREAA--VES-------------- 299 (759)
T ss_pred HHHHHh---hccHHHhhhhhc---ch----------------------------hhHHHHH--HHH--------------
Confidence 621110 000000000000 00 0000000 000
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccch
Q 000166 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ 637 (1974)
Q Consensus 558 ~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~ 637 (1974)
- ....+.-.++++ ....+-+.+++...+.+|..|-...+.+.+.-..+++ +
T Consensus 300 ---------------~--------~~l~~l~~~~~d----~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~-~- 350 (759)
T KOG0211|consen 300 ---------------L--------VSLLDLLDDDDD----VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP-S- 350 (759)
T ss_pred ---------------H--------HHHHHhcCCchh----hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc-c-
Confidence 0 000000000000 1123334444444444444444444333322111111 0
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchh--hhHHHHHHHHHHHhhc-
Q 000166 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT--RAHAMKCLTTFSEAVG- 714 (1974)
Q Consensus 638 ~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~--r~~a~e~L~~~aE~~~- 714 (1974)
.+| ...++....-++|... |..+..-...+++-.+
T Consensus 351 ------------~~~------------------------------~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 351 ------------ATR------------------------------TQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred ------------cCc------------------------------ccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence 011 1112223333344331 2222222223333333
Q ss_pred ---hHhHHHHHHHh---hhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHh
Q 000166 715 ---PGFIFERLYKI---MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1974)
Q Consensus 715 ---p~~V~~~l~~~---~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~ 788 (1974)
+......+++. +....|+-|++...-.+......||.. =.+..+.+..... +..-+|.||-.-+..+
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~ti~~llp~~~~~-l~de~~~V~lnli~~l----- 461 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE-RTISELLPLLIGN-LKDEDPIVRLNLIDKL----- 461 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC-cCccccChhhhhh-cchhhHHHHHhhHHHH-----
Confidence 33333333222 234566666665555544444444421 1122333333322 4444444444443221
Q ss_pred hhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChH
Q 000166 789 FVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868 (1974)
Q Consensus 789 ~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK 868 (1974)
.+.+.+.... +... .+..+=+.+...-+|.+|.
T Consensus 462 ----------------------s~~~~v~~v~------g~~~-------------------~s~slLp~i~el~~d~~wR 494 (759)
T KOG0211|consen 462 ----------------------SLLEEVNDVI------GIST-------------------VSNSLLPAIVELAEDLLWR 494 (759)
T ss_pred ----------------------HHHHhccCcc------cchh-------------------hhhhhhhhhhhhccchhHH
Confidence 2333332100 0000 0111122344556677999
Q ss_pred HHHHHHHHHHHHHHHcc-cCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc
Q 000166 869 VRLESIEAVNKILEEAN-KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (1974)
Q Consensus 869 ~RkEaLe~v~~il~~an-krI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D 947 (1974)
+|.+.++-+-.++.+-. .++-+. ++++. ..=+.|-=--+---|.+++..++...|+. =+...++|-++...++
T Consensus 495 vr~ail~~ip~la~q~~~~~~~~~-~~~l~---~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~--w~~~~~i~k~L~~~~q 568 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLGVEFFDEK-LAELL---RTWLPDHVYSIREAAARNLPALVETFGSE--WARLEEIPKLLAMDLQ 568 (759)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhHH-HHHHH---HhhhhhhHHHHHHHHHHHhHHHHHHhCcc--hhHHHhhHHHHHHhcC
Confidence 99999999988886532 111121 12222 22234433445566788888899998833 3455788999999999
Q ss_pred CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH----hcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhc-c
Q 000166 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-T 1022 (1974)
Q Consensus 948 ~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L----~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L-~ 1022 (1974)
..-.+|.+...++..++..+|-+-..+++...+ .++ +|+.|-.++..|.+-++.+.. +.....+.|+..+| .
T Consensus 569 ~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~-~~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 569 DNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDE-SVRDEEVLPLLETLSS 645 (759)
T ss_pred cccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcch-HHHHHHHHHHHHHhcc
Confidence 888999999999999999999766655444444 344 588999999999887766653 45667788877776 7
Q ss_pred CCChHHHHHHHHHHHHHHHhcCHHHH
Q 000166 1023 DKSSDVRKAAEACIVEILRAGGQETI 1048 (1974)
Q Consensus 1023 Dr~~dVRkaA~~~L~~~m~~~G~~~~ 1048 (1974)
|-+.|||-.|+.+.+.++-+.-|..+
T Consensus 646 d~~~dvr~~a~~a~~~i~l~~~~~~~ 671 (759)
T KOG0211|consen 646 DQELDVRYRAILAFGSIELSRLESSL 671 (759)
T ss_pred CcccchhHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999998877665544
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.94 E-value=0.0029 Score=82.50 Aligned_cols=389 Identities=15% Similarity=0.156 Sum_probs=256.1
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHH
Q 000166 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~ 369 (1974)
-..-+.+++-.+|+=+-=.+..+.... ++-.--.+.+|.+=+.|.|-.+...|+++++.++. ...+..+++
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~ 117 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIP 117 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHH
Confidence 344456788888887665555543210 00122367788888889999999999999999982 245788999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHH
Q 000166 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1974)
Q Consensus 370 ~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1974)
.+..-+.++.+.||.++.-|+-.++....-.+.+ +.+.+...+..++|.|+..++..+..+ ..++.....++..+..
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHH
Confidence 9999999999999999999999999862223445 689999999999999999999999988 3333332244566677
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH-----HHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000166 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-----LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1974)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~-----l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1974)
.+.+.+.+.+|-++-....+|..+...--+.. +..++.-|......-+-|++.
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~---------------------- 253 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIR---------------------- 253 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHH----------------------
Confidence 77788899999987776666554332211111 111111111111111111110
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000166 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1974)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~ 603 (1974)
... ....+.+ +...+-
T Consensus 254 -----------------~i~------------------------------------------~l~~~~~-----~~~~~~ 269 (526)
T PF01602_consen 254 -----------------LII------------------------------------------KLSPSPE-----LLQKAI 269 (526)
T ss_dssp -----------------HHH------------------------------------------HHSSSHH-----HHHHHH
T ss_pred -----------------HHH------------------------------------------HhhcchH-----HHHhhH
Confidence 000 0000111 112223
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~-~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~ 682 (1974)
.-+...|.++++-.|.-+++.+....... +... ..++.+.++. .+.+..|-...++++..+++. ..+
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~ 337 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNV 337 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cch
Confidence 45678889999999999999998776664 3222 3444444443 467788999999999998864 245
Q ss_pred hhhccchhhccc---cchhhhHHHHHHHHHHHhhc--hHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH
Q 000166 683 VLCLLGISERVA---DIKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (1974)
Q Consensus 683 ~~~l~~lveKlg---D~K~r~~a~e~L~~~aE~~~--p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K 757 (1974)
..++..+..-+. |.-.+..+...+..+|+.+. .++.+..+++.+ ...++-+..+++..+...+....-. -.
T Consensus 338 ~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~ 413 (526)
T PF01602_consen 338 KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---RE 413 (526)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HH
T ss_pred hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hH
Confidence 556666666663 55688888889999999765 467888888875 6678899999999999999774322 12
Q ss_pred hHHHHHhhhcCC-CccHHHHHHHHHHHHHHHhhhCc
Q 000166 758 DLIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGP 792 (1974)
Q Consensus 758 ~lI~~~k~~~L~-~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1974)
.++..+.+. +. -.++.++.+++-++|+---++..
T Consensus 414 ~~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 414 KILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc
Confidence 233443333 33 47888999999999997766665
No 26
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.93 E-value=0.051 Score=68.75 Aligned_cols=351 Identities=17% Similarity=0.213 Sum_probs=247.3
Q ss_pred CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc--cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Q 000166 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1974)
Q Consensus 321 ~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr--~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~ 398 (1974)
.-...|++.+-++|..--..|-..|++.++.|++-|. ..|+ -..-+-.-+.|.++|-=|.|.-.+.+|+-++....-
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~-~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK-ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH-HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 3467899999999987778888999999999999887 2232 233445567899999999999999999999987521
Q ss_pred -----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHH---HhhhCCCCHHHHHHHHHHHH
Q 000166 399 -----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLA 470 (1974)
Q Consensus 399 -----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l---~k~l~Ds~~~VR~aA~~~l~ 470 (1974)
-++.++++.+...|.+|.-.|-..|..|+...-.+.+.-.. .+.++-++ +..|--.+.++|.+|.+.+|
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~---~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG---VREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC---HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 24668888899999999999999999999876555443211 14555554 45567789999999999999
Q ss_pred HHHHHhCh-hHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCC
Q 000166 471 AIAKSVGM-RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVS 549 (1974)
Q Consensus 471 ~lmk~~Ge-~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~ 549 (1974)
-|.+.+|. +.+..++++|+- +|.-.... +.- . .+
T Consensus 756 ~Is~aiGPqdvL~~LlnnLkv------qeRq~Rvc----tsv-----a---------------------I~--------- 790 (975)
T COG5181 756 CISRAIGPQDVLDILLNNLKV------QERQQRVC----TSV-----A---------------------IS--------- 790 (975)
T ss_pred hHHhhcCHHHHHHHHHhcchH------HHHHhhhh----hhh-----h---------------------hh---------
Confidence 99999995 556666777753 33222100 000 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHH
Q 000166 550 AAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQV 629 (1974)
Q Consensus 550 ~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v 629 (1974)
-+ .++ +.
T Consensus 791 --iV-------------------------------ae~-------------cg--------------------------- 797 (975)
T COG5181 791 --IV-------------------------------AEY-------------CG--------------------------- 797 (975)
T ss_pred --hh-------------------------------Hhh-------------cC---------------------------
Confidence 00 000 00
Q ss_pred HhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHH
Q 000166 630 EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLT 707 (1974)
Q Consensus 630 ~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~ 707 (1974)
+-.+|--.++ .+.-.|..||+.+|..++.+.+.-+.-+...++.+.|-+-|-+.|. -.|..+.++++
T Consensus 798 --------pfsVlP~lm~---dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 798 --------PFSVLPTLMS---DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred --------chhhHHHHHh---cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 0011111111 2455677888999999888888777788899999999999999985 46778888777
Q ss_pred HHHHh---hchHhHHHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHH
Q 000166 708 TFSEA---VGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIK 781 (1974)
Q Consensus 708 ~~aE~---~~p~~V~~~l~~~~~~---~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~ 781 (1974)
-++=- ++-.=.+=+++..++- --.|-|+....+.|..+-.-.|. .++.+|+-. ||=|....||+.=-.
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~-----g~~m~Yv~q-GLFHPs~~VRk~ywt 940 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS-----GAMMKYVQQ-GLFHPSSTVRKRYWT 940 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc-----HHHHHHHHH-hccCchHHHHHHHHH
Confidence 76543 3333334445544432 34788877666555544443354 588889887 699999999999999
Q ss_pred HHHHHHhhhCchhHhhh---hcchHHHHHHHH
Q 000166 782 LLGALHKFVGPDIKGFL---ADVKPALLSALD 810 (1974)
Q Consensus 782 Ll~~ly~~~G~~l~~~l---~dlkpall~~Ie 810 (1974)
..-.||.+-.+++-+|+ +|.+|-+..+|+
T Consensus 941 vyn~myv~~~damvp~ypv~~d~n~e~~~~l~ 972 (975)
T COG5181 941 VYNIMYVFDSDAMVPCYPVEEDLNPELARTLH 972 (975)
T ss_pred HHhhhhhcccccccccccCCCCcCHHHHhhhh
Confidence 99999999999999888 677888777664
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0022 Score=80.39 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=123.1
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc---cchHHHHhhhc---cchhHhHHHHHHHHHHHHHHhcCh
Q 000166 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT---GELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGP 928 (1974)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~---geL~~aLk~Rl---~DsNk~lv~~al~ii~~lA~amG~ 928 (1974)
+..+.+.++||-+--||.|--++++++.+ .+..+.+ -.++..|.+++ -++|.+= -.|-=+..++.|+|+
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~---l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk--GgLiGlAA~~iaLg~ 76 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKD---LVNNNDYDQIRKVISELAGDYAYSPHANMRK--GGLIGLAAVAIALGI 76 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHhccCccccccc--chHHHHHHHHHHhcc
Confidence 45677889999999999999999999974 4445543 23555566666 2454433 344444556677899
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHh----cccCCcchHHHHHHHHHHHhc
Q 000166 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLT 1002 (1974)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~----~~~~~p~~R~e~l~wL~~~l~ 1002 (1974)
+-.+|...++|||+.||+|+--.||--|-++|.-++..+- .-.+++.|.++|- +.-.|..+=.|++.-|.+-..
T Consensus 77 ~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 77 KDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV 156 (675)
T ss_pred ccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc
Confidence 9888999999999999999999999999999999998874 3344667777774 222355566788887776665
Q ss_pred cCCCCcchhhhhhhHhhh-ccCCChHHHHH
Q 000166 1003 GLSGFPDAAHLLKPASIA-MTDKSSDVRKA 1031 (1974)
Q Consensus 1003 ~~~~~~~~~~~~~p~~~~-L~Dr~~dVRka 1031 (1974)
......--.+-..|++.| |-+.++.+|..
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~f 186 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQF 186 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHH
Confidence 544432224445565554 78889999964
No 28
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00012 Score=86.19 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=154.2
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000166 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l 368 (1974)
-...|.|..|-...++|.-+-.|.. ++..-...+.+++=++-+-+..-+-.|...|+.|++.|...+......-...++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988765 555556668888888888888999999999999999999999999888999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC-hhHHhHhhhhhH
Q 000166 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYV 447 (1974)
Q Consensus 369 ~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~-~~~~~~~~k~~~ 447 (1974)
-.||-|-.+-|..|||.+..||.++..+ .+...++..+..+++|.||.+|.-...-+.+|+.... .......+...+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999986 8899999999999999999999988888888887653 112223456778
Q ss_pred HHHHhhhCCCCHHHHHHHHHHH
Q 000166 448 PICMECLNDGTPEVRDAAFSVL 469 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l 469 (1974)
+.+-.-+.|+-|++|++|-..+
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~ 272 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVR 272 (334)
T ss_pred HHHHhhhcccccccccchhHHH
Confidence 9999999999999999887544
No 29
>PRK09687 putative lyase; Provisional
Probab=97.75 E-value=0.0026 Score=76.76 Aligned_cols=252 Identities=14% Similarity=0.092 Sum_probs=145.5
Q ss_pred HHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHH
Q 000166 708 TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1974)
Q Consensus 708 ~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly 787 (1974)
.-+.....++ +++.+ .+.++.|+.+++..| ..+|- ..+++.+..+ +.+.|+.||..|+..||.+-
T Consensus 18 ~~~~~~~~~~----L~~~L-~d~d~~vR~~A~~aL----~~~~~-----~~~~~~l~~l-l~~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 18 SQCKKLNDDE----LFRLL-DDHNSLKRISSIRVL----QLRGG-----QDVFRLAIEL-CSSKNPIERDIGADILSQLG 82 (280)
T ss_pred HHHhhccHHH----HHHHH-hCCCHHHHHHHHHHH----HhcCc-----chHHHHHHHH-HhCCCHHHHHHHHHHHHhcC
Confidence 3444444444 44442 788999998877664 34453 3556666667 88899999999999998853
Q ss_pred hh------hCchhHhh-hhcchHHHH-HHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHH
Q 000166 788 KF------VGPDIKGF-LADVKPALL-SALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 859 (1974)
Q Consensus 788 ~~------~G~~l~~~-l~dlkpall-~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~ 859 (1974)
.- .-+.|..+ +.|--+... +.+.+ ....... . ++-+..+.+.+.
T Consensus 83 ~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~a-LG~~~~~-----------------------~----~~~~~~a~~~l~ 134 (280)
T PRK09687 83 MAKRCQDNVFNILNNLALEDKSACVRASAINA-TGHRCKK-----------------------N----PLYSPKIVEQSQ 134 (280)
T ss_pred CCccchHHHHHHHHHHHhcCCCHHHHHHHHHH-Hhccccc-----------------------c----cccchHHHHHHH
Confidence 21 11112222 122212211 11111 1111000 0 000111233455
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhH
Q 000166 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (1974)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~ 939 (1974)
.-+.|++|.+|..+...+..+= . .+.+.+|...|.|.|..|-..|+..+|.+ + -......+
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~----------~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~----~~~~~~~~ 195 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIN----------D-EAAIPLLINLLKDPNGDVRNWAAFALNSN----K----YDNPDIRE 195 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccC----------C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C----CCCHHHHH
Confidence 5678888888888888884331 1 55777888888888887777776666655 1 11235667
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhh
Q 000166 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI 1019 (1974)
Q Consensus 940 ~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~ 1019 (1974)
.++..|.|....||.+|+.+|-.+ |-...+|.+...|.++. .|.++ .+.|..+... ..+.++..
T Consensus 196 ~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L~~~~----~~~~a----~~ALg~ig~~----~a~p~L~~ 259 (280)
T PRK09687 196 AFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIKELKKGT----VGDLI----IEAAGELGDK----TLLPVLDT 259 (280)
T ss_pred HHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHHHHcCCc----hHHHH----HHHHHhcCCH----hHHHHHHH
Confidence 788888888888888888888663 44577788888887542 34433 3344444331 23344445
Q ss_pred hcc-CCChHHHHHHHHHHH
Q 000166 1020 AMT-DKSSDVRKAAEACIV 1037 (1974)
Q Consensus 1020 ~L~-Dr~~dVRkaA~~~L~ 1037 (1974)
.+. +.++.||..|-++|.
T Consensus 260 l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHhhCCChhHHHHHHHHHh
Confidence 553 667888887776653
No 30
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.37 Score=63.21 Aligned_cols=649 Identities=16% Similarity=0.186 Sum_probs=331.4
Q ss_pred hhhhhhhh---hcCCCCHH-HHHHHHHHHHHHHHHcChhhh-hhhhHHHHHHHhhhhc--CChhhHHHHHHHHHHHHhhc
Q 000166 52 ELGPLFKK---TVADSNAP-VQDKALDALIAYLKAADADAG-RYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE 124 (1974)
Q Consensus 52 ~~~~l~kk---~v~DsN~~-aqEk~leal~~~l~~a~~~~~-~~~~~v~~~lveK~L~--~r~ktk~~a~e~~l~~vE~e 124 (1974)
.|++++.. .+.|.++. .-+..+||+-..++-.++..- ....+++.+||-=... +-..-+-.|..|++.-.|..
T Consensus 126 ~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 126 QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH
Confidence 35666654 48888888 778889998776666555321 2234455555443222 12233345666666655553
Q ss_pred h--------hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC--hhHHHhhchhhhcCCChhHHHHHHHHHHH
Q 000166 125 A--------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQDQNVRASSKGLTLE 194 (1974)
Q Consensus 125 ~--------~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~--~K~ilk~l~~lf~h~dk~VR~ea~~L~ve 194 (1974)
+ ...+.++...++..---+|.++++.++..++.-|=-..-+ -+.++..--..|-+.|..|--.|+.+-..
T Consensus 206 ~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 206 KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2 1244555566666666788888888888887755321110 11222222222335566666555554332
Q ss_pred HHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHh--hhhhcccCCCCCCCCCC----CCCCC-
Q 000166 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL--GQELISEDVGPGPSEES----TADVP- 267 (1974)
Q Consensus 195 lyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~--~~~a~~~~~~~~~~~~~----~~~~~- 267 (1974)
++ +. .-++ .-|+.+++++... |.-.+|.|+.-.--. --+...- -+.+.+++. .+.+.
T Consensus 286 ic----eE---------EiD~-~~e~~e~~d~~~~-p~~~~fa~~a~~~v~P~Ll~~L~k-qde~~d~DdWnp~kAAg~C 349 (859)
T KOG1241|consen 286 IC----EE---------EIDL-AIEYGEAVDQGLP-PSSKYFARQALQDVVPVLLELLTK-QDEDDDDDDWNPAKAAGVC 349 (859)
T ss_pred HH----HH---------HHHH-HHHHHHHhhcCCC-chhhHHHHHHHhHhhHHHHHHHHh-CCCCcccccCcHHHHHHHH
Confidence 22 11 0011 1234444443211 112445554322000 0000000 000000000 00000
Q ss_pred ----CCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcC---CCCCCChhHHHHHHHHHhcchhHH
Q 000166 268 ----PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIA 340 (1974)
Q Consensus 268 ----~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~p---Ki~~~dy~dL~~~Lkk~l~DsNv~ 340 (1974)
...=-.|++++| + +.+.+++.+++|..|-.|.=.+--++.-| ++.+- -.+.+..+-..+.|+++.
T Consensus 350 L~l~A~~~~D~Iv~~V-----l--~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 350 LMLFAQCVGDDIVPHV-----L--PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHhcccchhhh-----H--HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhcCchhh
Confidence 000012445544 2 34445999999999999988877665422 33321 234566666777799999
Q ss_pred HHHHHHHHHHHHHHHhccccc--cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCch
Q 000166 341 VAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPL 418 (1974)
Q Consensus 341 vv~~A~~~i~~LA~gLr~~F~--~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~ 418 (1974)
|--.++-+++.+++.+..... -|...+++.+++-+.|- |.|....--|+-.+ .|.+-++.-.. ++
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~L-----------aea~~eA~~s~-~q 488 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISL-----------AEAAYEAAVSN-GQ 488 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHH-----------HHHHHHhccCC-CC
Confidence 999999999999999985433 35666677777777664 33333222222222 22222211111 11
Q ss_pred hHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhC--C-CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHH
Q 000166 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN--D-GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495 (1974)
Q Consensus 419 vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~--D-s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~K 495 (1974)
- ++..++...++..|++..+ | .+...|-+|+++|+++++..-. ...+.+.++-..-+.|
T Consensus 489 t-----------------~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~-~vy~~v~~~~l~il~k 550 (859)
T KOG1241|consen 489 T-----------------DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD-DVYPMVQKLTLVILEK 550 (859)
T ss_pred C-----------------CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHH
Confidence 1 0111223455666666654 3 5678999999999999998774 4667777788888888
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000166 496 LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETS 575 (1974)
Q Consensus 496 I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s 575 (1974)
+.+++.+..- .-
T Consensus 551 l~q~i~~~~l----~~---------------------------------------------------------------- 562 (859)
T KOG1241|consen 551 LDQTISSQIL----SL---------------------------------------------------------------- 562 (859)
T ss_pred HHHHHHHHhc----cH----------------------------------------------------------------
Confidence 9888863100 00
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccc
Q 000166 576 KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEK 655 (1974)
Q Consensus 576 ~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~Pgwkes 655 (1974)
+......|++..+-..+. .++..+.+ .+ .+-.|.-...++|.|.. +.|
T Consensus 563 ----------~dr~q~~eLQs~Lc~~Lq-~i~rk~~~----~~-------------~~~~d~iM~lflri~~s----~~s 610 (859)
T KOG1241|consen 563 ----------ADRAQLNELQSLLCNTLQ-SIIRKVGS----DI-------------REVSDQIMGLFLRIFES----KRS 610 (859)
T ss_pred ----------hhHHHHHHHHHHHHHHHH-HHHHHccc----cc-------------hhHHHHHHHHHHHHHcC----Ccc
Confidence 000012333332211110 11111111 00 11112223445555543 333
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhH
Q 000166 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735 (1974)
Q Consensus 656 NfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ 735 (1974)
++ |...+|-.+..+++..++-+.+.+..+.|+ +..++.+.----|-
T Consensus 611 ~~-v~e~a~laV~tl~~~Lg~~F~kym~~f~py---------------------------------L~~gL~n~~e~qVc 656 (859)
T KOG1241|consen 611 AV-VHEEAFLAVSTLAESLGKGFAKYMPAFKPY---------------------------------LLMGLSNFQEYQVC 656 (859)
T ss_pred cc-chHHHHHHHHHHHHHHhHhHHHHHHHHHHH---------------------------------HHHHhhcchHHHHH
Confidence 33 444444445545544333222233333333 22222222223344
Q ss_pred HHHHHHHHHHHHHhccCccch-HhHHHHHhhhcCCCccH--HHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000166 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAA--ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1974)
Q Consensus 736 ae~l~wl~~ai~eFG~~~l~~-K~lI~~~k~~~L~~sN~--~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~E 812 (1974)
..+...++.+-+..+-+.++. ..+...+-.+ |++.|- .|+-.=++++|.+-+-+|.....||+.+=|-+.+.=..+
T Consensus 657 ~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~-Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 657 AAAVGLVGDLARALEDDILPYCDELMTVLVQC-LSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-ccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 444444444444445444433 2444445554 776654 477788889999999999999999987665543321111
Q ss_pred HhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc-----ccC
Q 000166 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-----NKR 887 (1974)
Q Consensus 813 F~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a-----nkr 887 (1974)
-++ +.+|. -+.+. +.|+..||....|+..= +..
T Consensus 736 ~d~------------------------~~~~~-----------~dYvd-------~LRe~~leay~gi~qglk~~~~~~~ 773 (859)
T KOG1241|consen 736 TDP------------------------ADDSM-----------VDYVD-------ELREGILEAYTGIIQGLKTHADVML 773 (859)
T ss_pred CCC------------------------CcccH-----------HHHHH-------HHHHHHHHHHHHHHHHhhcccchhh
Confidence 000 00110 01222 45999999999999742 123
Q ss_pred CCCCCccchHHHHhhhc-cchh-HhHHHHHHHHHHHHHHhcChhHHhh
Q 000166 888 IQPAGTGELFGGLRGRL-YDSN-KNLVMATLITLGAVASAMGPAVEKS 933 (1974)
Q Consensus 888 I~p~~~geL~~aLk~Rl-~DsN-k~lv~~al~ii~~lA~amG~~~~k~ 933 (1974)
++|-. +-++.-+.+.= .+.+ -.+...|+.+||.||...|++..++
T Consensus 774 ~~p~v-~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~ 820 (859)
T KOG1241|consen 774 VQPYV-PHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKL 820 (859)
T ss_pred hhcch-HHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhh
Confidence 45543 44555554432 3444 7888999999999999999877654
No 31
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.68 E-value=0.004 Score=77.04 Aligned_cols=366 Identities=17% Similarity=0.185 Sum_probs=230.6
Q ss_pred hhHHHHHHHHHHHhhchHhHHHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCc--cchHhHHHHHhhhcCCCccH
Q 000166 699 RAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSH--LKLKDLIDFCKDTGLQSSAA 773 (1974)
Q Consensus 699 r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~---~KnPKv~ae~l~wl~~ai~eFG~~~--l~~K~lI~~~k~~~L~~sN~ 773 (1974)
++.-....+++.++..+-|... +.+.|-. .-.||.+.-.+++++...+++-..+ .+-++.-.-.++. +.+..+
T Consensus 81 ~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm-~~~~~d 158 (516)
T KOG2956|consen 81 KKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKM-FPWMFD 158 (516)
T ss_pred HhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhc-cccccC
Confidence 4444556677777777766655 6665533 3379999999999999998775432 3434433333333 222111
Q ss_pred H-----HHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC-CCCCc--c--cc-ccccCc-----C--
Q 000166 774 A-----TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPK--K--TV-RASEST-----S-- 835 (1974)
Q Consensus 774 ~-----VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~-~p~p~--R--~~-r~~~~~-----~-- 835 (1974)
. +=...-+.++.+......+++..++++.|-...-.-+-.+-+..++ .|.|. + +. +.+... +
T Consensus 159 ~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~~ 238 (516)
T KOG2956|consen 159 PRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPEE 238 (516)
T ss_pred chhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChhh
Confidence 1 1112223444555445677888888888877666655555554332 12221 1 10 000000 0
Q ss_pred CCC---------------CCC--------------CCCCCc--cccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHHH
Q 000166 836 SVS---------------SGG--------------SDGLPR--EDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEE 883 (1974)
Q Consensus 836 ~~~---------------~~~--------------~d~lpR--vDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~~ 883 (1974)
... .+. .|.+++ +|= ..+..++++++.+. .=-.|++||-++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~-~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e 317 (516)
T KOG2956|consen 239 EKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQ-SALVADLLKEISGSERASERKEALSELPKMLCE 317 (516)
T ss_pred cccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcch-hHHHHHHHHhccCccchhHHHHHHHHHHHHHHc
Confidence 000 000 011222 222 22345677777665 888999999999999975
Q ss_pred cccCCCCCCccchHHHHhhhccc-hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCch-hHHHHHHHHHH
Q 000166 884 ANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLD 961 (1974)
Q Consensus 884 ankrI~p~~~geL~~aLk~Rl~D-sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~-~vR~aa~~ald 961 (1974)
..--+=..-+++|+-.+=..|.| .+-+....||++|+.+.++=-..+.-|+-..+.-+|++=.|.-. .+|.|+-.|+.
T Consensus 318 ~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 318 GSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred cchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 31001011167888888899988 88889999999999999999999999999999999999999655 66777777777
Q ss_pred HHHHhccchhhhHHHHHHHhcccCCcchH-HHHHHHHHHHhccCCCC---cchhhhhhhHhhhccCCChHHHHHHHHHHH
Q 000166 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 962 a~~~~~gl~~~~~~i~~~L~~~~~~p~~R-~e~l~wL~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
......++..+. .|...+-+.- +-| .-++..+.+-+...+.- ..+..+++.++..-+..+..|||.|==||.
T Consensus 398 ~las~~P~~~I~-~i~~~Ilt~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 398 TLASHLPLQCIV-NISPLILTAD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhhCchhHHH-HHhhHHhcCc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 776766765543 3333333211 012 23344566555555431 112223333777889999999999999999
Q ss_pred HHHHhcCHHHHHHHhhccCchhHHHHHHHHHhcc
Q 000166 1038 EILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1974)
Q Consensus 1038 ~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~ 1071 (1974)
.++..+|.+.|.+++..|-.+.+..|+=.+..+.
T Consensus 474 amv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~ 507 (516)
T KOG2956|consen 474 AMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRAS 507 (516)
T ss_pred HHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhh
Confidence 9999999999999999999888888887777643
No 32
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.58 Score=61.51 Aligned_cols=579 Identities=15% Similarity=0.174 Sum_probs=322.1
Q ss_pred HHHHHHHHHHHHhhhc--CCCCCCChhHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHH
Q 000166 300 SERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (1974)
Q Consensus 300 keRkEALe~L~~L~~~--pKi~~~dy~dL~~~Lkk~l~--DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLe 373 (1974)
--|...||.|-=++.. |.--..-|.+++.++-.-.. ..+..|-..|++|+-.--.=-+.+|..- ...++....|
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 3555677777656642 32222346666666555443 5555555566666544433345567643 5566777778
Q ss_pred HhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHH-----HHHHhhcCCchhHHHHHHHHHHHHhh---------------
Q 000166 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIET--------------- 433 (1974)
Q Consensus 374 klKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~-----i~~al~~KnP~vk~etl~~L~r~l~~--------------- 433 (1974)
-.--.-..|+.|+..||..++.-++..+.-.+++ -+.+|++-|+.|..++..|-....+.
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888999999999999987533344433333 35789999999999999988754431
Q ss_pred CChhHH---hHhhhhhHHHHHhhhC-------CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcC
Q 000166 434 SSKAAV---LKVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1974)
Q Consensus 434 ~~~~~~---~~~~k~~~~~l~k~l~-------Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1974)
.++... ...++.++|.++++|. |-+=.+-+||..||.-+...+|.+.+...+. -|++.
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~--------Fiee~---- 372 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLP--------FIEEN---- 372 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHH--------HHHHh----
Confidence 111111 1234678888888872 2223467888889998888888776543332 22222
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 000166 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1974)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~ 583 (1974)
T Consensus 373 -------------------------------------------------------------------------------- 372 (859)
T KOG1241|consen 373 -------------------------------------------------------------------------------- 372 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc--h----hHHHHHHHHHhcCC-C-ccc
Q 000166 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--Q----SVEILVRLVCMLPG-W-SEK 655 (1974)
Q Consensus 584 ~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~--~----~~~~Lvr~l~~~Pg-w-kes 655 (1974)
+.+-||+.|=+|+-.+-..+++.++.. . ..-.++.... +|. | +|+
T Consensus 373 --------------------------i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdT 425 (859)
T KOG1241|consen 373 --------------------------IQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDT 425 (859)
T ss_pred --------------------------cCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-Cchhhhcch
Confidence 222356666666666665555532210 0 0011122221 111 1 222
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhH
Q 000166 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735 (1974)
Q Consensus 656 NfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ 735 (1974)
--..+.+.++.+...+ +. ..-++-++.-++.++ +-.|+|-
T Consensus 426 aAwtlgrI~d~l~e~~----------------------~n----------------~~~l~~~l~~l~~gL--~DePrva 465 (859)
T KOG1241|consen 426 AAWTLGRIADFLPEAI----------------------IN----------------QELLQSKLSALLEGL--NDEPRVA 465 (859)
T ss_pred HHHHHHHHHhhchhhc----------------------cc----------------HhhhhHHHHHHHHHh--hhCchHH
Confidence 2222222222222100 00 112223333444443 4556665
Q ss_pred HHHHHHH---HHHHHHhccCc----cch---HhHHHHHhh-hcCCC-ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchH
Q 000166 736 SEGILWM---VSAVEDFGVSH----LKL---KDLIDFCKD-TGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803 (1974)
Q Consensus 736 ae~l~wl---~~ai~eFG~~~----l~~---K~lI~~~k~-~~L~~-sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkp 803 (1974)
+-++--+ .+++-+-+... ..- .++|.-+-+ .-..+ ..-+.|++|-..|++|-++.-.+..+.+..+-+
T Consensus 466 ~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l 545 (859)
T KOG1241|consen 466 SNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTL 545 (859)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 5544332 23333444332 111 122222211 11212 345799999999999999999998888888888
Q ss_pred HHHHHHHHHHh--cCCCCCCCCCccc-cccccCc-----C---CCCCCCCCCCCccccccCCcHHHHhhcCC-CChHHHH
Q 000166 804 ALLSALDAEYE--KNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRL 871 (1974)
Q Consensus 804 all~~Ie~EF~--K~~~~~~p~p~R~-~r~~~~~-----~---~~~~~~~d~lpRvDIs~kit~~l~~~l~d-~~WK~Rk 871 (1974)
..+..|+.-.+ .... -.|- .+.=++. + ...+ . .+-.++++|-.-|+.-+++ +.=-+--
T Consensus 546 ~il~kl~q~i~~~~l~~-----~dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e 615 (859)
T KOG1241|consen 546 VILEKLDQTISSQILSL-----ADRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHE 615 (859)
T ss_pred HHHHHHHHHHHHHhccH-----hhHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchH
Confidence 88887777666 1111 0110 0000000 0 0000 0 2234566777778888887 3345677
Q ss_pred HHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCch
Q 000166 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950 (1974)
Q Consensus 872 EaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~ 950 (1974)
||+=+|..+++...++..--. ..+.+-|-.-| +-.--.|...|..++|.|+.+|+..|-+|+-.++..++.+|+....
T Consensus 616 ~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~ 694 (859)
T KOG1241|consen 616 EAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNL 694 (859)
T ss_pred HHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccc
Confidence 889899888875432211111 12223333333 3344567788999999999999999999999999999999987543
Q ss_pred --hHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhccc---CCc----------chHHHHHHHHHHHhccCC---CCcch
Q 000166 951 --HMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAK---LGA----------EGRKDLFDWLSKQLTGLS---GFPDA 1010 (1974)
Q Consensus 951 --~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~---~~p----------~~R~e~l~wL~~~l~~~~---~~~~~ 1010 (1974)
+|.-+.+.+..-++.+.| ++.-++++...|...+ .-| ++|..++.--.--+...+ ....+
T Consensus 695 hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~ 774 (859)
T KOG1241|consen 695 HRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLV 774 (859)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Confidence 344456666666666665 4555555555554211 011 266666655333333333 23334
Q ss_pred hhhhhhHhhhc------cCCChHHHHHHHHHHHHHHHhcCHHHH
Q 000166 1011 AHLLKPASIAM------TDKSSDVRKAAEACIVEILRAGGQETI 1048 (1974)
Q Consensus 1011 ~~~~~p~~~~L------~Dr~~dVRkaA~~~L~~~m~~~G~~~~ 1048 (1974)
.+.+.+|++-+ .|-+..+-..|-.++|-+....|.+..
T Consensus 775 ~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~ 818 (859)
T KOG1241|consen 775 QPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVI 818 (859)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchh
Confidence 45566666532 344456677788899999888884433
No 33
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.54 E-value=0.044 Score=69.32 Aligned_cols=177 Identities=21% Similarity=0.235 Sum_probs=126.0
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhccchhHhHHHHHHHHHHHHHH
Q 000166 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVAS 924 (1974)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~Rl~DsNk~lv~~al~ii~~lA~ 924 (1974)
-+|.+.|||- +.++--|+--..+.=|..|+..+.-.|.+. |-++ .|-.-|+-.||-+-..|-+..|.|+.
T Consensus 687 ~~ilP~ltPI----Lrnkh~Kv~~nti~lvg~I~~~~peyi~~r---EWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 687 SGILPSLTPI----LRNKHQKVVANTIALVGTICMNSPEYIGVR---EWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred hhccccccHh----hhhhhHHHhhhHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 4566667774 345666777788888888887553334332 3222 34445567899999999999999999
Q ss_pred hcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 925 amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
+.||. -++-.++..|+-+.-+.|.+..-++..+++.||.=.++|.+..-...|. .+....+|.-+.=.|.-+
T Consensus 760 aiGPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe--~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 760 AIGPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPE--ANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred hcCHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCch--hHHHHhHHHHHHHHHHHH
Confidence 99974 4567778888888999999999999999999999999996655555453 334555555443333222
Q ss_pred CC-CcchhhhhhhHhh-hccCCChHHHHHHHHHHHHH
Q 000166 1005 SG-FPDAAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1005 ~~-~~~~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.. +.+....+.|++. .|+||++--|.-|..++-.+
T Consensus 832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 21 3466777788554 89999999999988776544
No 34
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.49 E-value=0.028 Score=75.27 Aligned_cols=382 Identities=20% Similarity=0.196 Sum_probs=247.9
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh--
Q 000166 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-- 402 (1974)
Q Consensus 325 dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~-- 402 (1974)
++.........|.+.+|=..+++=++.+|+++.+ ..-...++|....-..|-+.+||+++.+++..+..+ +.-+
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l--~~~~~d 312 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDL--LDDDDD 312 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHh--cCCchh
Confidence 4445555566799999999999999999999998 334667788888888999999999999999999997 3333
Q ss_pred ---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChh
Q 000166 403 ---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1974)
Q Consensus 403 ---~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~ 479 (1974)
.+.+.+..+.+.+...+|.-+..|+...-....+... --...++....+.|...++|-+.+.=...+-..+.+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~---~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT---RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC---cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 3456667788899999998888887766554333111 1235788889999999999988876555554444422
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCC
Q 000166 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (1974)
Q Consensus 480 ~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~ 559 (1974)
.+ .+--+..-.-.+++++.... . -++...++...+..|..+
T Consensus 390 ~~---~~i~~~~ilp~~~~lv~d~~---------------------~------~vr~a~a~~~~~~~p~~~--------- 430 (759)
T KOG0211|consen 390 CY---PNIPDSSILPEVQVLVLDNA---------------------L------HVRSALASVITGLSPILP--------- 430 (759)
T ss_pred cc---cccchhhhhHHHHHHHhccc---------------------c------hHHHHHhccccccCccCC---------
Confidence 11 11111111223444443210 0 000000000001111100
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHH--HHhhhccch
Q 000166 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQ--VEAVQNLDQ 637 (1974)
Q Consensus 560 ~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~--v~~~~~~~~ 637 (1974)
+ ++....+-+-.+.++.+-.=..|++.++-+... +......+.
T Consensus 431 -----------k------------------------~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 431 -----------K------------------------ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred -----------c------------------------CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 0 000112233445556666666777777644322 222222333
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-CC-CccchhhhccchhhccccchhhhHHHHHHHHHHHhhch
Q 000166 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KF-PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP 715 (1974)
Q Consensus 638 ~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~-~f-s~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p 715 (1974)
..+.++..+...-+|. |-.|..+.++.+..++...+ .| -.....+|..++.+++-. +|+.+...|..++|.+|.
T Consensus 476 ~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~--Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYS--IREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHH--HHHHHHHHhHHHHHHhCc
Confidence 4566666555433344 88999999999999887654 33 344556677776665544 467788899999999998
Q ss_pred HhHHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc
Q 000166 716 GFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1974)
Q Consensus 716 ~~V~~~l~~~~---~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1974)
+|-...+.... ..+.|-++|.-++.-+..+..-||-. +--+.++.++... ..+++|+||-.+.+.|-.+-.++-.
T Consensus 552 ~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-i~~~~Llp~~~~l-~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 552 EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-ITCEDLLPVFLDL-VKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-HHHHHHhHHHHHh-ccCCchhhhhhHHHHHHHHHhhcch
Confidence 88766554422 34667899999999999888888864 7789999999997 9999999999999988766665554
Q ss_pred h
Q 000166 793 D 793 (1974)
Q Consensus 793 ~ 793 (1974)
.
T Consensus 630 ~ 630 (759)
T KOG0211|consen 630 S 630 (759)
T ss_pred H
Confidence 3
No 35
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=1.2 Score=61.23 Aligned_cols=649 Identities=15% Similarity=0.167 Sum_probs=370.7
Q ss_pred hcCC-CCCCChhHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhccc-cc-cchhhhHHHHHHHhccCCHHHHHHHHH
Q 000166 314 STKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQ 388 (1974)
Q Consensus 314 ~~pK-i~~~dy~dL~~~Lkk~l~--DsNv~vv~~A~~~i~~LA~gLr~~-F~-~y~~~~l~~lLeklKEKK~~V~eA~~~ 388 (1974)
.+|+ +-..-|++....|..++. .+|-.|.-.++.|++.|-.+-... +. .-.+..+-.+|.=.-.+|+.||.+++.
T Consensus 81 ~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~ 160 (1176)
T KOG1248|consen 81 YVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQR 160 (1176)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4666 334458999999999998 999999999999999998875422 43 226778889999999999999999999
Q ss_pred HHHHHHHhcCCChhh-------hHHHHHHHhhcCC-chhHHHHHHHHH---HHHhhCChhHHhHhhhhhHHHHHhhhCCC
Q 000166 389 TLQAMHKAGCLNLVD-------VVEDVKTSVKNKV-PLVRSLTLNWVT---FCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1974)
Q Consensus 389 aLda~~~~~~~~l~~-------~~e~i~~al~~Kn-P~vk~etl~~L~---r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1974)
++-++....|+-++. +....+.-++.+- +..-..++++|. ..+.+.|.. +++.++..|+.++.-+
T Consensus 161 ~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~----li~sl~e~lL~i~~~s 236 (1176)
T KOG1248|consen 161 GIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRP----LIKSLCEVLLNITTES 236 (1176)
T ss_pred HHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhhcccc
Confidence 999998743333321 1222222333222 444455555543 222233333 3589999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhh
Q 000166 458 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 537 (1974)
Q Consensus 458 ~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1974)
+..|+-.+++||..+.+---. .|+...-.++-.++-..+ |+.- .+-. ...=
T Consensus 237 ~v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~~---------D~~~-----t~~W 287 (1176)
T KOG1248|consen 237 PVLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSEN---------DDLL-----TVAW 287 (1176)
T ss_pred hHHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCcc---------chHH-----HHHH
Confidence 999999999999888754332 333333344444332211 0000 0000 0000
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHH
Q 000166 538 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 617 (1974)
Q Consensus 538 ~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~ 617 (1974)
...+.. +... =..+..|-+...+-.+|+ -+.+ +..+.-++
T Consensus 288 ~~v~~~---------------------------------~~~~-----la~~q~~~~~~~~~~~~~-~~~t-~~~s~~~e 327 (1176)
T KOG1248|consen 288 LKVLNE---------------------------------AHDI-----LATLQEEKALQALPRLFS-LFFT-ILESLIEE 327 (1176)
T ss_pred HHHHHH---------------------------------HHHH-----HHHhCHHHHHHhhhhhhh-HHHH-HHhcccHH
Confidence 000000 0000 001112223333322332 2344 77777888
Q ss_pred HHHHHHHHHHHHHhhhc--cchhHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccc
Q 000166 618 RLEAISSLRQQVEAVQN--LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (1974)
Q Consensus 618 RL~a~E~l~~~v~~~~~--~~~~~~~-Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlg 694 (1974)
++++.-.....|-.... .+.-|.- +-.++..+ | --|...+|.|+..+.+.++..+....--++.++++.=+
T Consensus 328 ~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~k--f----~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~ 401 (1176)
T KOG1248|consen 328 LVQAASQSLKEILKESVTVIDALCSKQLHSLLDYK--F----HAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRA 401 (1176)
T ss_pred HHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcch--H----HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhc
Confidence 88876665544433111 1111222 22233221 1 13666777788888887777777777778888877433
Q ss_pred c--chhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH----hHHHHHhhhcC
Q 000166 695 D--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK----DLIDFCKDTGL 768 (1974)
Q Consensus 695 D--~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K----~lI~~~k~~~L 768 (1974)
+ .=.+....+++-+..-+.||+-|+.-+==.+ ++-..+..=.||--+|+++-. +-++- .++..+++ +
T Consensus 402 ~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~-~A~La~F~~~ivpla~s--l 474 (1176)
T KOG1248|consen 402 SPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYII-GASLAFFTEYIVPLAMS--L 474 (1176)
T ss_pred CCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhc-cCcHHHHHHHHHHHHHH--H
Confidence 3 3355677888888888899988776542222 666777788899999987654 23333 33333332 2
Q ss_pred CCccHHHHHHHHHHHHHHHhhhCchhHhh--------------hhcchHHHHHHHHHH--------------HhcCC---
Q 000166 769 QSSAAATRNATIKLLGALHKFVGPDIKGF--------------LADVKPALLSALDAE--------------YEKNP--- 817 (1974)
Q Consensus 769 ~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~--------------l~dlkpall~~Ie~E--------------F~K~~--- 817 (1974)
.+.-+.+..+....- +|.-++..||.. |.|+=|.+...|..+ .+.+.
T Consensus 475 ~~K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~ 552 (1176)
T KOG1248|consen 475 QLKAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSS 552 (1176)
T ss_pred HHHHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcc
Confidence 222233333332222 444444444432 223333333333221 22220
Q ss_pred -----------------------CCCCCCCcccc-----------c------cccCc--------CCCCCCCCCCCCccc
Q 000166 818 -----------------------FEGTVVPKKTV-----------R------ASEST--------SSVSSGGSDGLPRED 849 (1974)
Q Consensus 818 -----------------------~~~~p~p~R~~-----------r------~~~~~--------~~~~~~~~d~lpRvD 849 (1974)
+.++++..|.. | ...+. +..+++.+ .-
T Consensus 553 ~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~-----~s 627 (1176)
T KOG1248|consen 553 DAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD-----ES 627 (1176)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch-----hh
Confidence 11122222110 0 00000 00000000 11
Q ss_pred cccCCcH----------------------HHHhhcCCC-ChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhcc
Q 000166 850 ISGKFTP----------------------TLVKSLESP-DWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLY 905 (1974)
Q Consensus 850 Is~kit~----------------------~l~~~l~d~-~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~Rl~ 905 (1974)
++++++- ++....+.+ +=+++|-+.+=++.++.- ..........-++...|..-+.
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 1111111 122233333 677777787777777742 0000111112567788888888
Q ss_pred chhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH--h---cc-------chhhh
Q 000166 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA--A---VH-------LDKMV 973 (1974)
Q Consensus 906 DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~--~---~g-------l~~~~ 973 (1974)
++-.-...-++.|+..|-...+..+..+.--.+|-++-.++|-...-|+-+.+||-.+.. . -| +.+|+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 888888899999999999999988888777778888777799999999999999988772 1 13 34455
Q ss_pred HHHHHHHhcccCCcchHHH-HHHH--HHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHH
Q 000166 974 PYVTTALTDAKLGAEGRKD-LFDW--LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1974)
Q Consensus 974 ~~i~~~L~~~~~~p~~R~e-~l~w--L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~ 1050 (1974)
..|...|.+.. +..+.- ++.+ +...+.++-...-+..++.-+..+|..++++||++|=..+-.++..+.+..+.+
T Consensus 788 ~~Isagl~gd~--~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~ 865 (1176)
T KOG1248|consen 788 SIISAGLVGDS--TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP 865 (1176)
T ss_pred HHHHhhhcccH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 55666655332 333444 3333 333333333333456667778889999999999999999999999999998888
Q ss_pred HhhccCc
Q 000166 1051 NLKDIQG 1057 (1974)
Q Consensus 1051 ~~~~Lk~ 1057 (1974)
+...|=|
T Consensus 866 ~~~~LL~ 872 (1176)
T KOG1248|consen 866 HLEELLP 872 (1176)
T ss_pred hHHHHHH
Confidence 8765543
No 36
>PRK09687 putative lyase; Provisional
Probab=97.33 E-value=0.0022 Score=77.34 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=121.1
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
+.+.+.+.+.....|.+++..|..+- ..+++..+.+.+.|.|..+-..|+.+++.|...=+. ....
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~---------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG---------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC---------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 46788899999999999999987663 245667777778899999999999999997531110 2346
Q ss_pred HHHHHHH-hccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 368 LPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 368 l~~lLek-lKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
++.+..- ++|+=+.||.++..+|=-+...........++.+..++.+++|.||..+..=|. .... ...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS----VIND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCC-------HHH
Confidence 6666665 689999999988888866643322234456777778899999999976655553 2221 235
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 447 VPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
++.++.+|+|.+++||..|..+||.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 78999999999999999999999988
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=97.23 E-value=0.2 Score=67.91 Aligned_cols=177 Identities=13% Similarity=0.094 Sum_probs=128.3
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000166 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1974)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1974)
...|.+.+.|+|=-+|-=||..+-.|.. |..+..+...+++.+.|.|.-|-..|+-|+..+-.--. ... ..
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv-~~ 177 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLF-YQ 177 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccc-cc
Confidence 4568889999999999999999865543 33456788999999999999999999999988854322 111 12
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhc-ccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000166 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD-AKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1974)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~-~~~~p~~R~e~l~wL~~~l~~~~~~~~~~ 1011 (1974)
..+++.+.+.|.|+.+.|...|+.+|..+.+..+ ++...+.+...+.. +..|++++..+|+.|.+.-+.. ..+..
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~--~~e~~ 255 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD--KESAE 255 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC--cHHHH
Confidence 3467778888999999999999999999987653 22223333333321 2357899999999997754322 23455
Q ss_pred hhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
.++.-+..+|..+|+.|-=+|-.++-.+...
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 6666777888999998888777776555433
No 38
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.00 E-value=0.03 Score=68.61 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=130.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCC---CCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc--cccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRI---APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi---~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr--~~F~~y 363 (1974)
++.+.+.+|+=+.|.++|+.+..++...-+ ..+.+..|+..+.+.|.=..-.=..+|+++++.++--|| ..-...
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 678888999999999999999887653322 235688999999999972222667789999999999988 333344
Q ss_pred hhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHhcCCChhhh------HHHHHHH--hh--cC--------CchhHHHH
Q 000166 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLVDV------VEDVKTS--VK--NK--------VPLVRSLT 423 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~--~V~eA~~~aLda~~~~~~~~l~~~------~e~i~~a--l~--~K--------nP~vk~et 423 (1974)
...+.|.|..-++|.-. .+|.++..||-.+.-.+|...+++ ++.|... .+ .+ +|.+....
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 66777777777777643 455666666665544434444433 3322211 11 11 24555544
Q ss_pred HHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
+.=-.-.+...+...+...+...+|.++.+|+-.+.+||-||.++|+-|.-...
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 443344555556555556668889999999999999999999999999987766
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.74 E-value=0.0086 Score=61.01 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHH
Q 000166 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423 (1974)
Q Consensus 344 ~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et 423 (1974)
-++-++..+|-||++....|...++|++|..|.|.-..||-++-++|-.+... + |.+.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~---------------------~~~~ 62 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-A---------------------RGEI 62 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-H---------------------HHHH
Confidence 35678899999999999999999999999999999999999999988888764 1 1111
Q ss_pred HHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000166 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
+.+ ...+...+.+.+.|+++.||.+| +.|..++|
T Consensus 63 l~~----------------f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 63 LPY----------------FNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHH----------------HHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 111 24456778899999999999998 45555543
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.71 E-value=0.011 Score=60.38 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000166 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 915 al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1974)
++-.++.+|.|+|+.+.+|...++|+|+.+|.|+-.-||-+|-++|-.+...++
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999999999999999999998877764
No 41
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=5.6 Score=55.26 Aligned_cols=629 Identities=17% Similarity=0.176 Sum_probs=323.7
Q ss_pred CCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHH---------HHHH
Q 000166 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE---------SLTQ 388 (1974)
Q Consensus 318 i~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~e---------A~~~ 388 (1974)
+..+..-.++..|-.+.+-+++.|...+++|+..|-++.-.. -.-.+..-+|..+-+-+|++.+ ++.+
T Consensus 217 ~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~---l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~ 293 (1176)
T KOG1248|consen 217 FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTA---LAAELNARLLTALMTLSPSENDDLLTVAWLKVLNE 293 (1176)
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 334678889999999999999999999999999998887652 2333344455555555655443 2223
Q ss_pred HHHHHHHhcC-C---ChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHH
Q 000166 389 TLQAMHKAGC-L---NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 464 (1974)
Q Consensus 389 aLda~~~~~~-~---~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~a 464 (1974)
+.+.++...- . .+..+..-+.+.+..-++++=+++.+-+.+.++.+.. ... ..|-..+-..|+=+...|-.-
T Consensus 294 ~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~---~~c~~~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 294 AHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VID---ALCSKQLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccH---HHHHHHHHHHHcchHHHHHHH
Confidence 3333322100 0 0122334455667788888888888888888876654 111 122335777888888888888
Q ss_pred HHHHHHHHHHHhChh---HHHHHhhcCCHHH-------HHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhh
Q 000166 465 AFSVLAAIAKSVGMR---PLERSIEKLDDVR-------RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (1974)
Q Consensus 465 A~~~l~~lmk~~Ge~---~l~~~l~~Ld~~k-------k~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1974)
.+..+..+.--+|+. .|.+.|+.|+..+ +..|.+++..+- .+-+ |+
T Consensus 370 ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV------------~AmG-----Pe------- 425 (1176)
T KOG1248|consen 370 ILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAV------------RAMG-----PE------- 425 (1176)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHH------------HhhC-----HH-------
Confidence 888888888888863 3666666666533 334555554310 0000 00
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhcc
Q 000166 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (1974)
Q Consensus 535 ~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~ 614 (1974)
.... ..|- .+....++ +-..+++--|++--
T Consensus 426 -----~vL~------~lpL-----------------------------nl~~~s~~----------~~RsWLLPvLR~~i 455 (1176)
T KOG1248|consen 426 -----RVLT------ILPL-----------------------------NLHAESLS----------FTRSWLLPVLRDYI 455 (1176)
T ss_pred -----HHHH------Hcch-----------------------------hccccccc----------cchhHhHHHHHHhh
Confidence 0000 0000 00000000 00111111111111
Q ss_pred -------HHHHHHH-HHHHHHHHHhhhccch---hHH-HHHHHHHhcCCCccchHHHHH---HHHHHHHHHHHhcCCCCc
Q 000166 615 -------WKERLEA-ISSLRQQVEAVQNLDQ---SVE-ILVRLVCMLPGWSEKNVQVQQ---QVIEVINYLAATATKFPK 679 (1974)
Q Consensus 615 -------WK~RL~a-~E~l~~~v~~~~~~~~---~~~-~Lvr~l~~~PgwkesNfqV~~---k~leil~~la~~~~~fs~ 679 (1974)
|.+..-. .+.+...+..+.+.+. ..| ++.++|.-.|||++.-.-+.. -.+-++....... .+.+
T Consensus 456 ~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr 534 (1176)
T KOG1248|consen 456 IGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELR 534 (1176)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhH
Confidence 1111111 1122222222221111 112 345566778999864443332 3333444333322 2555
Q ss_pred cchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHH-HHhccCccchHh
Q 000166 680 KCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV-EDFGVSHLKLKD 758 (1974)
Q Consensus 680 ~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai-~eFG~~~l~~K~ 758 (1974)
..+...+.-+++..-.++--....+.++.+|--+- -++=.+|......-+ ++..-+..||-.+. ..|-...=++-.
T Consensus 535 ~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL--~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~ 611 (1176)
T KOG1248|consen 535 ETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFL--PRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVG 611 (1176)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHH--HHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 55666666666554222222222333443332211 122223333211112 55666666666666 445443323222
Q ss_pred HHHHHhhhcCCCcc-HHH----HHHHHHHHHHHHhhhCchhHhhhhcchHH-HHHHHHHHHhcCCCCCCCCCcccccccc
Q 000166 759 LIDFCKDTGLQSSA-AAT----RNATIKLLGALHKFVGPDIKGFLADVKPA-LLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1974)
Q Consensus 759 lI~~~k~~~L~~sN-~~V----R~aAi~Ll~~ly~~~G~~l~~~l~dlkpa-ll~~Ie~EF~K~~~~~~p~p~R~~r~~~ 832 (1974)
.+.-.-.. +.+.+ -+| +-+=+.++..+-.+. ++.+. .+-+++.+|++.... -.+.|.-|-=.
T Consensus 612 ~l~~s~~e-~as~~~~s~~~~~~~slLdl~~~~a~~~---------~e~~vs~l~~v~~~~e~~~~~--~vQkK~yrlL~ 679 (1176)
T KOG1248|consen 612 SLKDSAGE-LASDLDESVASFKTLSLLDLLIALAPVQ---------TESQVSKLFTVDPEFENSSST--KVQKKAYRLLE 679 (1176)
T ss_pred HHHHHHHh-HhccchhhhhhHHHHHHHHHHHhhhccc---------cchhHHHHHHhhHHhhccccH--HHHHHHHHHHH
Confidence 22111111 22222 222 222233333332222 22221 222788888887431 11222211100
Q ss_pred Cc-CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH-HHhh---hccch
Q 000166 833 ST-SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRG---RLYDS 907 (1974)
Q Consensus 833 ~~-~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~-aLk~---Rl~Ds 907 (1974)
+. ...++.+ +-.+-..-|-..+.+-+.+..-=.|+++|..+..|+...+ +..-+++. .+.. -++|-
T Consensus 680 ~l~~~~s~~~----~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-----~e~~~~i~k~I~EvIL~~Ke~ 750 (1176)
T KOG1248|consen 680 ELSSSPSGEG----LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-----AEHCDLIPKLIPEVILSLKEV 750 (1176)
T ss_pred HHhcCCchhh----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHhcccc
Confidence 00 0001100 0000011123345566777788889999999999987542 22123222 2222 22899
Q ss_pred hHhHHHHHHHHHHHHH---HhcChhHHh---hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-c------chhhhH
Q 000166 908 NKNLVMATLITLGAVA---SAMGPAVEK---SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H------LDKMVP 974 (1974)
Q Consensus 908 Nk~lv~~al~ii~~lA---~amG~~~~k---~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-g------l~~~~~ 974 (1974)
|..--..|..||-.|. ...-.+-++ -..-+++-|-..|......++.+-+-++..++-.- + +..+++
T Consensus 751 n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 751 NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 9988899988887777 222222122 12223344444466667777777677777665432 1 345566
Q ss_pred HHHHHHhcccCCcchHHHHHHHHHHHhccCCCC---cchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000166 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (1974)
Q Consensus 975 ~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~ 1051 (1974)
++.-+|.+. +++.+..+++|+.......+.. +....++.-++.-+.|.+..+|++.-.+|..+++..|++.+...
T Consensus 831 ~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~ 908 (1176)
T KOG1248|consen 831 MVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESF 908 (1176)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhh
Confidence 777777754 6999999999999888777752 22233344466667888999999999999999999999999998
Q ss_pred hhc
Q 000166 1052 LKD 1054 (1974)
Q Consensus 1052 ~~~ 1054 (1974)
+..
T Consensus 909 ~pe 911 (1176)
T KOG1248|consen 909 LPE 911 (1176)
T ss_pred CHH
Confidence 763
No 42
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.36 E-value=5.3 Score=51.40 Aligned_cols=151 Identities=14% Similarity=0.108 Sum_probs=104.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHH----
Q 000166 336 DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVK---- 409 (1974)
Q Consensus 336 DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~---- 409 (1974)
..-..|-..|++|+-.=.--.+.+|..- ...++....|..--.-..+..|+-.||.-++.-.+..+.-.+|-.+
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777766555556777532 5566777788888888899999999999987643455555565433
Q ss_pred -HHhhcCCchhHHHHHHHHHHHHhh-C---------ChhHHh------HhhhhhHHHHHhhhCCCC-------HHHHHHH
Q 000166 410 -TSVKNKVPLVRSLTLNWVTFCIET-S---------SKAAVL------KVHKDYVPICMECLNDGT-------PEVRDAA 465 (1974)
Q Consensus 410 -~al~~KnP~vk~etl~~L~r~l~~-~---------~~~~~~------~~~k~~~~~l~k~l~Ds~-------~~VR~aA 465 (1974)
.+|++.|-+|+.++..|-....+. . +..+.. ...++++|.++++|+..+ =.+-.+|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 477899999999999988544432 1 100000 124778999999984322 2367899
Q ss_pred HHHHHHHHHHhChhHHHHHhh
Q 000166 466 FSVLAAIAKSVGMRPLERSIE 486 (1974)
Q Consensus 466 ~~~l~~lmk~~Ge~~l~~~l~ 486 (1974)
..||--+....|...|++.++
T Consensus 349 ~sCLqlfaq~~gd~i~~pVl~ 369 (858)
T COG5215 349 SSCLQLFAQLKGDKIMRPVLG 369 (858)
T ss_pred HHHHHHHHHHhhhHhHHHHHH
Confidence 999999999999988888664
No 43
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.022 Score=67.78 Aligned_cols=178 Identities=17% Similarity=0.244 Sum_probs=134.6
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000166 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1974)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1974)
..+++|+|++|-.--+||--+-.+.. =++.+--+.+-+++-++-+-++.-+..|...|.-+++.|.++++..+......
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999986664 23444444467888888888999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcch----hh
Q 000166 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA----AH 1012 (1974)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~----~~ 1012 (1974)
++-.++.+=++.|..||++|..+|.+++.++.-..+++.+..++.+.+ |..|...-.-..++...+...+-. ..
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n--~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSN--PRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhc--hhhhhhhhccccccceeccccchhhHhHHH
Confidence 999999999999999999999999999999999999999999998653 433333222111121111111111 11
Q ss_pred hhhhHhhhccCCChHHHHHHHHHHH
Q 000166 1013 LLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
++..+-..+-|+-+++|++|.-++.
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~ 273 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRL 273 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHH
Confidence 2222334578999999998886553
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.25 E-value=0.66 Score=60.87 Aligned_cols=103 Identities=24% Similarity=0.321 Sum_probs=79.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChh----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 371 lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
+++.|-+.+...++.+..+|+.++.. ..+. ++.+.+..+|.|.+|.||.-+++=|.|++.........-.-..+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~--~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA--LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 77777777777778888888888875 4444 44566778999999999999999999998654321111111558
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 447 VPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
++.++.|+.|.+.+|-+.|..+|..+.++
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999888765
No 45
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.10 E-value=0.0074 Score=48.43 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.1
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
++|.++++++|++++||.+|..+|+.|.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 46
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.69 E-value=0.03 Score=60.82 Aligned_cols=113 Identities=29% Similarity=0.503 Sum_probs=84.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000166 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1974)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1974)
..+.+.||-. +-.|++..|.. +..-.|.+++|++||...|.+++..||.++..+..=.|..|... .+-|
T Consensus 16 ~~~~~~Dw~~-------~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~f 86 (140)
T PF00790_consen 16 ESLPSPDWSL-------ILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEF 86 (140)
T ss_dssp TTSSS--HHH-------HHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred cCCCCCCHHH-------HHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHH
Confidence 3456778853 23344333333 44448999999999999999999999999999999999999765 4567
Q ss_pred hHHHHHHhccCchh----HHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 938 LSDILKCLGDNKKH----MRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 938 ~~~il~~l~D~K~~----vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
+..+...+.+++.. ||+-+++.+..|....+-++-++.|.+...
T Consensus 87 l~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~ 134 (140)
T PF00790_consen 87 LDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYK 134 (140)
T ss_dssp HHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHH
T ss_pred HHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHH
Confidence 77777777766554 899999999999999976666666555543
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.63 E-value=7.9 Score=51.06 Aligned_cols=389 Identities=15% Similarity=0.158 Sum_probs=226.1
Q ss_pred cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHH
Q 000166 729 HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSA 808 (1974)
Q Consensus 729 ~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ 808 (1974)
..++.....++..|..++..+-...+ ...+.+++.. ||.|.||.||.-+.+.++-+-..-...+..
T Consensus 49 ~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~------------ 114 (503)
T PF10508_consen 49 TSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAAQL------------ 114 (503)
T ss_pred hcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHHHH------------
Confidence 33788888888888888887766555 5667778877 499999999999988754433211100000
Q ss_pred HHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCC
Q 000166 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888 (1974)
Q Consensus 809 Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI 888 (1974)
+. ...+-+.++.-+.+++=.+-++|...+..|.. ++..
T Consensus 115 ------------------------------------~~----~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~ 152 (503)
T PF10508_consen 115 ------------------------------------LV----DNELLPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEG 152 (503)
T ss_pred ------------------------------------hc----CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC--Cchh
Confidence 00 01133456777899999999999999999984 2211
Q ss_pred CCCC-ccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHh
Q 000166 889 QPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1974)
Q Consensus 889 ~p~~-~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~ 966 (1974)
-... -+++...|+.-+..+|-.+...++.++..|+..--..++... .++++.++..|.+.-..|+-.+++.+...+..
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 1111 123377788888666777777788888777655444443332 36999999999999999999999999988875
Q ss_pred c-cchh-----hhHHHHHHHhcccCCc-c------hHHHHHHHHHHHhccCCC--CcchhhhhhhHhhhccCCChHHHHH
Q 000166 967 V-HLDK-----MVPYVTTALTDAKLGA-E------GRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKA 1031 (1974)
Q Consensus 967 ~-gl~~-----~~~~i~~~L~~~~~~p-~------~R~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L~Dr~~dVRka 1031 (1974)
- |+.- +++-+...|.+...+| . ++-..++-++.. .+. ......++.-++.+++..+...|-.
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~ 309 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEVLELYPAFLERLFSMLESQDPTIREV 309 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence 4 3322 2334555555444455 1 222222222211 110 0112333444566778999999999
Q ss_pred HHHHHHHHHHhc-CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 000166 1032 AEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPT 1110 (1974)
Q Consensus 1032 A~~~L~~~m~~~-G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1110 (1974)
|-+.+|.+-... |...+. .+-.+.-...+..+.+..+.
T Consensus 310 A~dtlg~igst~~G~~~L~---~~~~~~~~~~l~~~~~~~~~-------------------------------------- 348 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQLLL---QKQGPAMKHVLKAIGDAIKS-------------------------------------- 348 (503)
T ss_pred HHHHHHHHhCCHHHHHHHH---hhcchHHHHHHHHHHHHhcC--------------------------------------
Confidence 999998775443 555541 11111222222222222110
Q ss_pred CCCCCCccccchhhhhhhhhhcccCCCChHHHHh-hhhc-cc--cccCCChhHHHHHHHHHHHhhhHH----HHHhhccc
Q 000166 1111 KGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVR-RF--KFEDPRIEQIQELENDMMKYFRED----LHRRLLST 1182 (1974)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~-~~~~-kw--~f~~pr~e~ve~L~~q~~~~~~~~----l~~~Lf~~ 1182 (1974)
++ -+-|.| +..+ .| ..++...+++-.+...+-..++.. ++-.+...
T Consensus 349 -~~-------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q 402 (503)
T PF10508_consen 349 -GS-------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ 402 (503)
T ss_pred -Cc-------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 00 000110 0000 01 111122333433333333333322 44455567
Q ss_pred CHHH-HHHHHHHHHHhcCCC-hhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHH
Q 000166 1183 DFKK-QVDGLEMLQKALPSI-RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (1974)
Q Consensus 1183 Dfk~-~l~al~~l~~~l~~~-~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~ 1243 (1974)
.|-+ |++|+..|....... .-..+.+.-=++.|++=|-.|+|..+..-..++++.+.....
T Consensus 403 PF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 7766 899999988776543 112233344467788779999999999999999987665444
No 48
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=12 Score=53.41 Aligned_cols=246 Identities=19% Similarity=0.285 Sum_probs=164.5
Q ss_pred HHHhhhhcCChhhHHHHHHHHHHHHHHhccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh
Q 000166 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (1974)
Q Consensus 722 l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~---~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l 798 (1974)
.+......-||-.|.+.+.||-+.+.-.|-. .+..+.+..---.. |+..|-=+-..|-.=+|-+|-.-|.+++.-|
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~-Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L 900 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHL-LSDNDEFSQDVASRGLGLVYELGDSSLKKSL 900 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHH-hcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence 3333356779999999999999999999922 34455555333444 9999999999999999999987766666433
Q ss_pred hcchHHHHHHHHHHHhcCCCCCCCCCccccccccC-cCCCCCCCC-----CCCC-ccccccCCcHHH-Hhhc----CCCC
Q 000166 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES-TSSVSSGGS-----DGLP-REDISGKFTPTL-VKSL----ESPD 866 (1974)
Q Consensus 799 ~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~-~~~~~~~~~-----d~lp-RvDIs~kit~~l-~~~l----~d~~ 866 (1974)
=..|+.++-. .|-....-..-|.-. +.. -+..+.||. |+.- .-|+ + -|++ |+=| ...-
T Consensus 901 ---V~sL~~tl~~--Gkr~~~~vs~eTelF--q~G~Lg~Tp~Gg~isTYKELc~LASdl-~--qPdLVYKFM~LAnh~A~ 970 (1702)
T KOG0915|consen 901 ---VDSLVNTLTG--GKRKAIKVSEETELF--QEGTLGKTPDGGKISTYKELCNLASDL-G--QPDLVYKFMQLANHNAT 970 (1702)
T ss_pred ---HHHHHHHHhc--cccccceeccchhcc--cCCcCCCCCCCCcchHHHHHHHHHhhc-C--ChHHHHHHHHHhhhhch
Confidence 2234444433 111100000000000 000 011111110 0000 0000 1 1334 3323 3345
Q ss_pred hHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhc
Q 000166 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946 (1974)
Q Consensus 867 WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~ 946 (1974)
|.-|+=|-=-+.+|..+|.-.++|.. +.|++-|-.==-|-+++|+..-..|-..|-+--..-+++|..-++-.+|-.|+
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988899986 88887774433799999998888888888887777889999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000166 947 DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1974)
Q Consensus 947 D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1974)
++-=-||+|+--||.-....=..+.+.+.|.+.
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpel 1082 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPEL 1082 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 999999999999999888877777776654443
No 49
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.57 E-value=0.24 Score=61.61 Aligned_cols=298 Identities=17% Similarity=0.159 Sum_probs=158.0
Q ss_pred cCCCChhHHHHHHHHHHHHhhhcCCCCChhhhhh----------hhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhh
Q 000166 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIREL----------GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1974)
Q Consensus 20 L~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~----------~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~ 89 (1974)
..|-.=|+|..|.--+..+.+++..-.-.-|+.. +.|+-=.++|.|+-...-++..+.+++..+.. +-.
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-fls 83 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-FLS 83 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-HHH
Confidence 3455568999998888877765532111111110 22333359999999999999988777755422 111
Q ss_pred hhhHHHHHHHhhhhcC----ChhhHHHHHHHHHHHHhhchhhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC
Q 000166 90 YAKEVCDAIAAKCLTG----RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1974)
Q Consensus 90 ~~~~v~~~lveK~L~~----r~ktk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~ 165 (1974)
.+.+ +-.-.|+- -+-..--+..|+++..|.| -.|-++..||.++..+|..--...+.
T Consensus 84 ~a~~----~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~~~l~ 144 (728)
T KOG4535|consen 84 VAED----TSDHAFTPFSVMIACSIRELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPYDRLK 144 (728)
T ss_pred HHhc----cCCcCCCchHHHHHHHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCchHHHH
Confidence 1000 00001110 0000011334444444433 34778888888888888765543332
Q ss_pred ---hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHH-
Q 000166 166 ---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ- 241 (1974)
Q Consensus 166 ---~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q- 241 (1974)
+-.+...++++..|+|++||-.+..+.+.|- |-..+ +..+|. -| +.+...|.....-
T Consensus 145 ~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v---~t~~~-------~pei~~-~~--------~~~~s~~n~~~~h~ 205 (728)
T KOG4535|consen 145 LSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV---STHAP-------LPEVQL-LL--------QQPCSSSNSATPHL 205 (728)
T ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---hcCCC-------CHHHHH-Hh--------cCCCccccccCCCC
Confidence 2345678899999999999999888766553 31111 111221 11 1111111110000
Q ss_pred ---hHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhh------hhccC--ChHHHHHHHHHHH
Q 000166 242 ---DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKAT--KWSERKDAVAELT 310 (1974)
Q Consensus 242 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~------~l~s~--KWkeRkEALe~L~ 310 (1974)
+-=.+- . .++...+-..+++.....|--++.++--..-+|+.|=|. .+++. -=--|.|+++-|.
T Consensus 206 s~~~~~~~l---~--~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~ 280 (728)
T KOG4535|consen 206 SPPDWWKKL---P--AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLT 280 (728)
T ss_pred CChHHHHhc---C--CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHH
Confidence 000000 0 001100001111222233444455554334444433322 11111 1236899998887
Q ss_pred HhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc
Q 000166 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361 (1974)
Q Consensus 311 ~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~ 361 (1974)
.+...--+..+-+.+|.|++.+.+.|.--.+-.-+++|+..+..+++....
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcC
Confidence 776655555566788999999999999999999999999999999985443
No 50
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.54 E-value=0.099 Score=57.19 Aligned_cols=109 Identities=17% Similarity=0.325 Sum_probs=84.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+...||-.= -.||+.-|. ++++.-|.+++|++||...|.+++..||.++..++.-.|+.|-.. .+-|+.
T Consensus 13 l~~~dw~~i-------l~icD~I~~--~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGLI-------LDVCDKVKS--DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHHH-------HHHHHHHhc--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 455789543 334433232 244457999999999999999999999999999999999999865 677888
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000166 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1974)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1974)
.+...+.+ .-..|++-++..+..|.....-+.=+..|.+.
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 124 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDL 124 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 88888888 67899999999999999888644444444443
No 51
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.54 E-value=0.036 Score=54.38 Aligned_cols=86 Identities=19% Similarity=0.346 Sum_probs=68.2
Q ss_pred hhHHHHhh-cCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccccchHHHH
Q 000166 1258 LPCLVEKS-GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV 1336 (1974)
Q Consensus 1258 lP~Lv~K~-Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~i 1336 (1974)
||.|+..+ .|+...||.. .++.++.+. ..++.++|.+.++++|+.+|..++.-||.+ | ..++++.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~---a~~~L~~~~-~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~-----~~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAE---AARALGELG-DPEAIPALIELLKDEDPMVRRAAARALGRI----G-----DPEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHH---HHHHHHCCT-HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-----HHHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHH---HHHHHHHcC-CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-----CHHHHHHH
Confidence 68888888 8888888865 555555543 458999999999999999999999999975 3 45678777
Q ss_pred HHHhcc-CChhHHHHHHHHHH
Q 000166 1337 ASLTAE-RDGEIRKAALNTLA 1356 (1974)
Q Consensus 1337 A~~i~d-rD~~VR~AALn~l~ 1356 (1974)
.+++.+ .|..||.+|+.+|+
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhcC
Confidence 776654 67778999999886
No 52
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.53 E-value=0.023 Score=51.37 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 417 P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
|.||...+.-|.+.. ........+++..++|.+..+|+|++++||.+|+.+||.|
T Consensus 1 p~vR~~A~~aLg~l~-~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLA-EGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTT-TTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHh-cccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 678888888887733 3333444566788999999999999999999999999864
No 53
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.50 E-value=0.085 Score=59.61 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCH
Q 000166 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1974)
Q Consensus 380 ~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~ 459 (1974)
+.||.-+.-++--++.....-++..++.+...|.+++|.||..++.-|++.+.+.- .+.-..++..++.++.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHHcCCCH
Confidence 45666666666555544233356688899999999999999999999999986531 12223345778899999999
Q ss_pred HHHHHHHHHHHHHHHHhChhHH
Q 000166 460 EVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 460 ~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
+||+.|..+|..+.+..+...+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH
Confidence 9999999999999988654444
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.46 E-value=0.11 Score=53.26 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=83.3
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc---CCC-hh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHh
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLN-LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~---~~~-l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~ 440 (1974)
.+++.+++.+++....++..+..||-.++... +.. +. ++++.+...|.+.+|.++..++..|.+.....+. ...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HHH
Confidence 47899999999999999999999988887530 000 22 5678888999999999999999888888765432 222
Q ss_pred Hhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 441 ~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
.+. ..+++.+.+++++.+.++|+.+..+|..+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 223 348999999999999999999999998763
No 55
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.28 E-value=0.11 Score=55.96 Aligned_cols=110 Identities=21% Similarity=0.350 Sum_probs=82.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-.= -.||+.-|.. +.+-.|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 13 l~~~dw~~~-------l~icD~i~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWELI-------LEICDLINST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHHH-------HHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 456788643 3344333333 44447999999999999999999999999999999999999765 556888
Q ss_pred HHHHHhccCch--hHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 940 ~il~~l~D~K~--~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
.+...+.+... .|++.++..+..|.....-++=++.|.+..
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y 126 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVY 126 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 77777776544 299999999999999886455555555443
No 56
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.14 E-value=0.042 Score=56.31 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=83.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc-cchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~-geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1974)
+.+++-+.+.+|..|..|+..+..+.... +....... .+.++.|..-|.|.|..++..|+.+++.|+..-......+.
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 45778888999999999999999988521 11111111 25677888888999999999999999999986544444444
Q ss_pred -hhhhHHHHHHhccCchhHHHHHHHHHHHHH
Q 000166 935 -KGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1974)
Q Consensus 935 -k~l~~~il~~l~D~K~~vR~aa~~alda~~ 964 (1974)
..+++.+++.+.+....+|..+..+|...+
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 458999999999999999999999887653
No 57
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.09 E-value=2.4 Score=52.35 Aligned_cols=261 Identities=20% Similarity=0.192 Sum_probs=166.9
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHH-hhhCchhHh
Q 000166 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH-KFVGPDIKG 796 (1974)
Q Consensus 718 V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly-~~~G~~l~~ 796 (1974)
.+..+++.+ .++++-++..+... +.+ +..+..+.-+.+. +.+.++.||..|+..||.+- ....+.+..
T Consensus 44 ~~~~~~~~l-~~~~~~vr~~aa~~----l~~-----~~~~~av~~l~~~-l~d~~~~vr~~a~~aLg~~~~~~a~~~li~ 112 (335)
T COG1413 44 AADELLKLL-EDEDLLVRLSAAVA----LGE-----LGSEEAVPLLREL-LSDEDPRVRDAAADALGELGDPEAVPPLVE 112 (335)
T ss_pred hHHHHHHHH-cCCCHHHHHHHHHH----Hhh-----hchHHHHHHHHHH-hcCCCHHHHHHHHHHHHccCChhHHHHHHH
Confidence 444555553 45566666555543 223 3344666666666 88888899999988776654 334455555
Q ss_pred hhh-cchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhc------------C
Q 000166 797 FLA-DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL------------E 863 (1974)
Q Consensus 797 ~l~-dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l------------~ 863 (1974)
+++ |.+.-.....-.-+.++..+.. + ..++..+ .
T Consensus 113 ~l~~d~~~~vR~~aa~aL~~~~~~~a--------------------------------~-~~l~~~l~~~~~~~a~~~~~ 159 (335)
T COG1413 113 LLENDENEGVRAAAARALGKLGDERA--------------------------------L-DPLLEALQDEDSGSAAAALD 159 (335)
T ss_pred HHHcCCcHhHHHHHHHHHHhcCchhh--------------------------------h-HHHHHHhccchhhhhhhhcc
Confidence 554 4544444444444444322110 0 0122222 3
Q ss_pred CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHH
Q 000166 864 SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (1974)
Q Consensus 864 d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~ 943 (1974)
+..|..|..+++.+..+-. .+.+..|+..+.|.+..+...|..-++.+...+ ..+.+.+..
T Consensus 160 ~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~ 220 (335)
T COG1413 160 AALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVK 220 (335)
T ss_pred chHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHH
Confidence 3558899999998876553 567788899999999977777777777766655 567788899
Q ss_pred HhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccC
Q 000166 944 CLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTD 1023 (1974)
Q Consensus 944 ~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~D 1023 (1974)
.++|....||.++..++... |...-.+.+...+.+. ++..+.....|+. ..+......++..-+.|
T Consensus 221 ~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 286 (335)
T COG1413 221 ALSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLID 286 (335)
T ss_pred HhcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhc
Confidence 99999999999999888665 4555556667777743 3445555555554 11233345567777899
Q ss_pred CChHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000166 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1974)
Q Consensus 1024 r~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1974)
.+..+|..+...++.+-..............-
T Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 318 (335)
T COG1413 287 EANAVRLEAALALGQIGQEKAVAALLLALEDG 318 (335)
T ss_pred chhhHHHHHHHHHHhhcccchHHHHHHHhcCC
Confidence 99999999998887776666655555554443
No 58
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.05 E-value=0.14 Score=50.15 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=68.2
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 368 l~~lLekl-KEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
+|.+++.+ +|+-+.||..+..+|- . ..-.+.++.+...+++++|.||..+...|.+. .. ...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~---~---~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~-------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG---E---LGDPEAIPALIELLKDEDPMVRRAAARALGRI----GD-------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH---C---CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH-------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH---H---cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC-------HHH
Confidence 57899999 9999999987666665 2 34557889999999999999999999888854 11 346
Q ss_pred HHHHHhhhCC-CCHHHHHHHHHHHH
Q 000166 447 VPICMECLND-GTPEVRDAAFSVLA 470 (1974)
Q Consensus 447 ~~~l~k~l~D-s~~~VR~aA~~~l~ 470 (1974)
++.+.+.+.| .+..||.+|..+||
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888887755 56778999999986
No 59
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.86 E-value=0.12 Score=55.62 Aligned_cols=108 Identities=22% Similarity=0.407 Sum_probs=81.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||..=.|=-| +|+ .. +.+-.|.+++|++||+..|.+++..||.++..+..=.|++|... .+-++.
T Consensus 13 ~~~~D~~~il~icd----~I~---~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWALNLELCD----LIN---LK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHHHHHHHH----HHh---CC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 45688874433333 332 11 44458999999999999999999999999999999999999764 336777
Q ss_pred HHHHHhccC---chhHHHHHHHHHHHHHHhccch-hhhHHHHH
Q 000166 940 DILKCLGDN---KKHMRECTLTVLDAWLAAVHLD-KMVPYVTT 978 (1974)
Q Consensus 940 ~il~~l~D~---K~~vR~aa~~alda~~~~~gl~-~~~~~i~~ 978 (1974)
.++..+..+ ...||.-+++.+..|....+-+ .-++.+.+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~ 126 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDLPGIED 126 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 788777764 5689999999999999988754 33444433
No 60
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.58 E-value=0.19 Score=54.83 Aligned_cols=111 Identities=20% Similarity=0.339 Sum_probs=84.9
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
.+...||-.=.|=-|.|. + . +.+-.|.+++|++||...|.+++..||.++..+..-.|..|-.. .+-|+
T Consensus 16 ~l~~~dw~~ileicD~In-----~-~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl 86 (142)
T cd03569 16 LLGEPDLASILEICDMIR-----S-K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM 86 (142)
T ss_pred ccCccCHHHHHHHHHHHh-----C-C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH
Confidence 346778875444444442 1 1 23337999999999999999999999999999999999999764 66788
Q ss_pred HHHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 939 ~~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
..+...+.+ ..+.|++-++..+..|....+-++=++.|.++.
T Consensus 87 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y 129 (142)
T cd03569 87 DELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTY 129 (142)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 888887764 455799999999999999887665555554444
No 61
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.42 Score=60.27 Aligned_cols=193 Identities=17% Similarity=0.167 Sum_probs=138.4
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCC-CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000166 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1974)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p-~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1974)
+.....+..|+.|--..--+-++..+ +.+.. ..+|+++..|..|..|.|-.+...|+.+++..|++|-.++.+|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 33456778999999888888888842 34441 3369999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHH---HHHHHh--cccCCcchHHHHHHHHHHHhccCCCC---
Q 000166 937 VLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY---VTTALT--DAKLGAEGRKDLFDWLSKQLTGLSGF--- 1007 (1974)
Q Consensus 937 l~~~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~---i~~~L~--~~~~~p~~R~e~l~wL~~~l~~~~~~--- 1007 (1974)
++-+|+..|=| ....|.-.++.||....+....+.+-++ ++.-+. -...+++.|...+--. ..|......
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lf-g~L~~l~g~~~e 378 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLF-GALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHH-HHHHHHcCCCch
Confidence 99999888876 3467888888888888877765555442 222221 0123577777665432 233333221
Q ss_pred ----cchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q 000166 1008 ----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1974)
Q Consensus 1008 ----~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~ 1053 (1974)
...+.-..|++-.|+|+++-|-+|-...+-+....++-+.......
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1234456788999999999998888877766655555555555554
No 62
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.48 E-value=0.33 Score=59.64 Aligned_cols=185 Identities=17% Similarity=0.157 Sum_probs=116.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHc--ccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcC--hhHHh
Q 000166 857 TLVKSLESPDWKVRLESIEAVNKILEEA--NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVEK 932 (1974)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~a--nkrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG--~~~~k 932 (1974)
+.+..+.+|+=+.|.+||+.+..++..- ..+|... +.+|..++.+.++-.+..=...|+++++.++.-+| .....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~-~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR-RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 4678889999999999999999999631 1123322 36788888888865555667899999999999988 55566
Q ss_pred hhhhhhHHHHHHhccCch--hHHHHHHHHHHHHH--Hhccchhhh---HHHH-----HHHh-ccc---C----Ccc-hHH
Q 000166 933 SSKGVLSDILKCLGDNKK--HMRECTLTVLDAWL--AAVHLDKMV---PYVT-----TALT-DAK---L----GAE-GRK 991 (1974)
Q Consensus 933 ~~k~l~~~il~~l~D~K~--~vR~aa~~alda~~--~~~gl~~~~---~~i~-----~~L~-~~~---~----~p~-~R~ 991 (1974)
....+.|.+...+.|.-. .+|.+++.||-... ...+.+.+. +.|- ..++ +++ + ++. .=.
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 677788888888888653 57788887776443 333344333 2111 1222 111 0 112 223
Q ss_pred HHHHH--HHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 992 DLFDW--LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 992 e~l~w--L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
-+-.| |...++...-.......+..+...|+..+.+||.+|-++|.-+...
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34445 5533322110111233344477788999999999999999766443
No 63
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.35 E-value=2 Score=55.16 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=146.3
Q ss_pred ccCChHHHHHHHHHHHHhhhcCCCCCC-ChhHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH
Q 000166 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1974)
Q Consensus 295 ~s~KWkeRkEALe~L~~L~~~pKi~~~-dy~dL~~~Lkk~l-~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lL 372 (1974)
....+-.|.-+++-+-.++ +|+.++ ...+++..+...+ .+.+...-..++.++.-++|||=-+-.+.+..++..++
T Consensus 200 ~~~~~~~~~~~~~~la~Lv--NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLV--NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4455889999888766554 346554 4777788777777 57788888899999999999996666788999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHh-c-CCC---------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000166 373 EKLKEKKPTVAESLTQTLQAMHKA-G-CLN---------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 373 eklKEKK~~V~eA~~~aLda~~~~-~-~~~---------------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1974)
+-|.+ +.+...+..++.-++.- . +.+ +..++..+.+..+.-+...|..-+.=|.-.+++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 66777788888777653 0 101 34566677777777777788888888898999999
Q ss_pred hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000166 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1974)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1974)
+..+...+..++|.++.+|+=.+++||.++.++|-.++.-- ...+..+++
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~ 405 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLS 405 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 98888888999999999999999999999999888888765 444555554
No 64
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.83 Score=57.79 Aligned_cols=210 Identities=15% Similarity=0.111 Sum_probs=150.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCC-CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~-~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
.|.+.+.+.+|++|.-..--+.++...+.+.+ +..++++-.|..+..|.|-.+-..|+.||+..|.|+......|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 34456889999999987777777766665554 78999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHHHHhcCCChh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh---
Q 000166 368 LPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK--- 436 (1974)
Q Consensus 368 l~~lLeklKEKK-~~V~eA~~~aLda~~~~~~~~l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~--- 436 (1974)
+-.|+--|=|-- ..|.--+..||.-+... .+.. ++...+.+..+.-++++|...+..+.-...-..+
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~--~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEK--ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHh--hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch
Confidence 999988876543 23333334555555443 2222 3334556788899999998887766655432221
Q ss_pred hHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000166 437 AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1974)
Q Consensus 437 ~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1974)
..+.... |.+ ..++-.++|++|-|=.|....+-+..--++-+.+..+..+.-+..+..+.++++
T Consensus 379 ~~Fte~v~k~~-~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn 443 (533)
T KOG2032|consen 379 EFFTEQVKKRL-APLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYN 443 (533)
T ss_pred hhhHHHHHhcc-ccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHH
Confidence 1111112 232 345667899999999888888887777777777777776443555667777765
No 65
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=94.32 E-value=0.29 Score=53.39 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=83.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
+...||-.=.|=-|.| |. ++++.-|.+++|++||. ..|.+++..||.++..++.=.|+.|-.. .+-|+
T Consensus 14 l~~~dw~~ileicD~I-------n~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNMEICDII-------NE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHHHHHHH-------hC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 4566887544444433 22 34444799999999997 4689999999999999999999999875 56788
Q ss_pred HH-HHHHhccCc---hhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 939 SD-ILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 939 ~~-il~~l~D~K---~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
.. ++..+.++. ..|++-++..+..|.....-++=++.|.+...
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~ 131 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYE 131 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHH
Confidence 87 677776433 48999999999999998865555555555443
No 66
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.89 E-value=0.71 Score=56.59 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCCc-cchH---HHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHH
Q 000166 869 VRLESIEAVNKILEEANKRIQPAGT-GELF---GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1974)
Q Consensus 869 ~RkEaLe~v~~il~~ankrI~p~~~-geL~---~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~ 944 (1974)
+..-|||-.+-|.+ +|.+..+ -|+. ..|=.-+.-+-..|...-++++...=.-+|+......+.++.+++-.
T Consensus 71 VH~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 45678999888884 5666542 3443 44555568888899999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCC------C--------Ccch
Q 000166 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDA 1010 (1974)
Q Consensus 945 l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~------~--------~~~~ 1010 (1974)
|-|...-+-+-+...++.+...+|-+-|...+-..+.+ ||..|.-++.|+.++++... . .++.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 99999999999999999999999999898887777773 57899999999999999876 1 2344
Q ss_pred hhhhhhHhhhccCCChHHHHHHHHHHHHH
Q 000166 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1011 ~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.-++..+++||+|.+-=|+..+-++|-.-
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLLLSH 252 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHHHHh
Confidence 55667799999999999999888777433
No 67
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=14 Score=48.70 Aligned_cols=280 Identities=17% Similarity=0.153 Sum_probs=164.8
Q ss_pred hHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhh-CCchhhH
Q 000166 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI-GKDPVKT 206 (1974)
Q Consensus 128 ~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwl-G~~~lk~ 206 (1974)
.+.+.+.......-+.|-..|+..|-++=+ |+|. .|.+.+...+++.+.+-.||.+|.+|+...-.-. |+. ..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL--~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~--e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKL--SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL--ER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccc--cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc--cc
Confidence 445556666677778999999998866544 7763 4788999999999999999999998875433222 331 01
Q ss_pred HHhhhchHHHHHHHHHHHHhcCCC----CCCcc----------------------------hhh-hHHhHHhhhhhcccC
Q 000166 207 ILFEKMRDTMKKELEVELVNVSGT----ARPTR----------------------------KIR-AEQDKELGQELISED 253 (1974)
Q Consensus 207 ~L~~~Lkp~q~keLe~efek~~~~----~~P~R----------------------------~~R-s~q~~~~~~~a~~~~ 253 (1974)
.- + -.+-.++.|.++... .-..| .+| ..-+.+.....-+.+
T Consensus 272 e~-~-----e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~G 345 (823)
T KOG2259|consen 272 ES-E-----EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSG 345 (823)
T ss_pred hh-h-----hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcC
Confidence 00 1 123344555554210 00000 000 000000000000111
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhh-hcCCCCCCChhHHHHHHHH
Q 000166 254 VGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKK 332 (1974)
Q Consensus 254 ~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~-~~pKi~~~dy~dL~~~Lkk 332 (1974)
.=..|-.-+++.+.++.|. +.+.|.+-=-=..|.-++++-=.-.|+.|++.+..|. +.|++...-+.=|+.
T Consensus 346 ewSsGk~~~advpsee~d~----~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvD---- 417 (823)
T KOG2259|consen 346 EWSSGKEWNADVPSEEDDE----EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVD---- 417 (823)
T ss_pred CcccCccccccCchhhccc----cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH----
Confidence 0000000112223333332 3333321110124566666666778999999999975 678887543333555
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh
Q 000166 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1974)
Q Consensus 333 ~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al 412 (1974)
.++|---.|-..|+..+..|+.-+ .--...++.|++.+-|.-..||+++++-|-.. . ++=-++++.....|
T Consensus 418 MfNDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~---~~d~~~i~m~v~~l 488 (823)
T KOG2259|consen 418 MFNDEIEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA-R---VSDLECIDMCVAHL 488 (823)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C---CCcHHHHHHHHHHH
Confidence 455666667788999999999763 23456799999999999999999999887643 1 22223444444333
Q ss_pred -h--cCCchhHHHHHHHHHHHHhhCCh
Q 000166 413 -K--NKVPLVRSLTLNWVTFCIETSSK 436 (1974)
Q Consensus 413 -~--~KnP~vk~etl~~L~r~l~~~~~ 436 (1974)
+ .|.|+=|-+++.-+.+.=++++.
T Consensus 489 L~~L~kyPqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 489 LKNLGKYPQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHhhhCCCCcHHHHHHHHHHhccChh
Confidence 2 58899999999888887777654
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.51 E-value=1.7 Score=49.26 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH-HHHHHHhhcCCc
Q 000166 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV-EDVKTSVKNKVP 417 (1974)
Q Consensus 339 v~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~-e~i~~al~~KnP 417 (1974)
..|-..++-+++.|+.. |...+-..+|.+..+|.|.-+.||..+..+|.-+...+.+.....+ -.++..+.+.||
T Consensus 2 ~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH
Confidence 44566777888888754 5556777899999999999999999999999998887656666554 888889999999
Q ss_pred hhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCC
Q 000166 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1974)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1974)
.||..+..|+.+......+..+ ...+|-++..+++.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCc
Confidence 9999999999999887434333 44555566666553
No 69
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.50 E-value=0.7 Score=50.40 Aligned_cols=98 Identities=16% Similarity=0.295 Sum_probs=78.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-.=.|--|. | |. +|++.-|-+++|++||...|.+++..||.++..++.=.|+.|... .+-|+.
T Consensus 14 l~~~dw~~ileicD~----I---n~--~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAIQAFCEQ----I---NK--EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHHHHHHHH----H---Hc--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 456788643333333 2 21 455546899999999999999999999999999999999999765 577999
Q ss_pred HHHHHhcc------CchhHHHHHHHHHHHHHHhcc
Q 000166 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 940 ~il~~l~D------~K~~vR~aa~~alda~~~~~g 968 (1974)
.++..+.+ .-..|++-.+..+..|.....
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99998864 347999999999999998875
No 70
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=8.4 Score=51.44 Aligned_cols=343 Identities=18% Similarity=0.174 Sum_probs=196.9
Q ss_pred ccchhH-hHHHHHH-HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhh--hHHHHHH
Q 000166 904 LYDSNK-NLVMATL-ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKM--VPYVTTA 979 (1974)
Q Consensus 904 l~DsNk-~lv~~al-~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~--~~~i~~~ 979 (1974)
|-|||+ ..+-.|+ .||+.||.|=. +..++|+|++...-+..-|+.-.-==|-.+++.-.=-.+ +.+++.+
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~ 116 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKA 116 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhh
Confidence 334544 4455555 57778877533 778999999999999999988887777777766542233 3489999
Q ss_pred HhcccCCcchHHHHHHHHHHHhccCCCCcchhhhh-hhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCch
Q 000166 980 LTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL-KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1974)
Q Consensus 980 L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~-~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~ 1058 (1974)
|++| ||..|. |-.|.|+.++.+ -..+++ ..+-.|..|-++-||+.|.-+++.+ =.|+|.
T Consensus 117 L~Dp--N~LiRa----sALRvlSsIRvp-~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL-------------YsLd~e 176 (968)
T KOG1060|consen 117 LKDP--NQLIRA----SALRVLSSIRVP-MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL-------------YSLDPE 176 (968)
T ss_pred hcCC--cHHHHH----HHHHHHHhcchh-hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH-------------hcCChh
Confidence 9988 455555 555566666643 223332 3355689999999999999888654 357778
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCC
Q 000166 1059 ALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSN 1138 (1974)
Q Consensus 1059 ~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1138 (1974)
-++.+++++++--.. .+ +. +-+.+.
T Consensus 177 ~k~qL~e~I~~LLaD-----------------------------~s-pl------------------VvgsAv------- 201 (968)
T KOG1060|consen 177 QKDQLEEVIKKLLAD-----------------------------RS-PL------------------VVGSAV------- 201 (968)
T ss_pred hHHHHHHHHHHHhcC-----------------------------CC-Cc------------------chhHHH-------
Confidence 888888888884310 00 00 001111
Q ss_pred hHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCC--------------h--
Q 000166 1139 KEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI--------------R-- 1202 (1974)
Q Consensus 1139 K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~--------------~-- 1202 (1974)
..|++.=+|.++.+..-..... +.|-.-|--.++=.|.||.+...++ +
T Consensus 202 -----------~AF~evCPerldLIHknyrklC-----~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~ 265 (968)
T KOG1060|consen 202 -----------MAFEEVCPERLDLIHKNYRKLC-----RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRS 265 (968)
T ss_pred -----------HHHHHhchhHHHHhhHHHHHHH-----hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccc
Confidence 2255545566664422221111 1111111112445566666532110 0
Q ss_pred ------------h-hhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHh-HHhhhhhHHHHhhcC-
Q 000166 1203 ------------K-DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES-EAAVFLPCLVEKSGH- 1267 (1974)
Q Consensus 1203 ------------~-~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~-EA~~flP~Lv~K~Gd- 1267 (1974)
+ ..=+-++|+|+-..==|+..|++|.+.|-... |+|..- +..-|+-.||--+-.
T Consensus 266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~-----------y~lAP~~~~~~i~kaLvrLLrs~ 334 (968)
T KOG1060|consen 266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF-----------YHLAPKNQVTKIAKALVRLLRSN 334 (968)
T ss_pred ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH-----------HhhCCHHHHHHHHHHHHHHHhcC
Confidence 0 00124778888766677889999999865433 333322 444444444443322
Q ss_pred --ChHHHHHHHHHHHHHHhhccCccchHHHHHh-hhccCChhh-HhHHHHHHHHHHHhhcCccccccchHHHHHHHhccC
Q 000166 1268 --NIEKVREKMRELTKQIVNFYSATKTLPYILE-GLRSKNNRT-RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAER 1343 (1974)
Q Consensus 1268 --~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~-glksKN~r~-R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i~dr 1343 (1974)
.+..|-+.+..+-.+-..+|- ||+-. =+.|+-+-+ ..==|+.|..|+..-.+. --|++.-.+|.+.
T Consensus 335 ~~vqyvvL~nIa~~s~~~~~lF~-----P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-----~ILrE~q~YI~s~ 404 (968)
T KOG1060|consen 335 REVQYVVLQNIATISIKRPTLFE-----PHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-----EILRELQTYIKSS 404 (968)
T ss_pred CcchhhhHHHHHHHHhcchhhhh-----hhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-----HHHHHHHHHHhcC
Confidence 344444444444333333221 23211 112333221 222367777777654432 2478999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhch
Q 000166 1344 DGEIRKAALNTLATGYKILGE 1364 (1974)
Q Consensus 1344 D~~VR~AALn~l~~~Y~~~Gd 1364 (1974)
|..|-.+|+.+||-+-..+|.
T Consensus 405 d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 405 DRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred chhHHHHHHHHHHHHHHhhCc
Confidence 999999999999977665553
No 71
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=35 Score=46.09 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-cchhhhHHHHHHHhccC
Q 000166 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEK 378 (1974)
Q Consensus 301 eRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~-~y~~~~l~~lLeklKEK 378 (1974)
.|+.+-.-+.++-. ++.+... ..++..|+..+.|+|..||+.|+..+..|.+-=+..+. .-...++..+|+++.|=
T Consensus 137 vRktaa~~vakl~~~~~~~~~~--~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec 214 (734)
T KOG1061|consen 137 VRKTAAVCVAKLFDIDPDLVED--SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC 214 (734)
T ss_pred HHHHHHHHHHHhhcCChhhccc--cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh
Confidence 35555444444422 3444322 35788999999999999999999999999987663222 33566777777777775
Q ss_pred CHHHHHHHHHHHHHHHHhc---CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhC
Q 000166 379 KPTVAESLTQTLQAMHKAG---CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 455 (1974)
Q Consensus 379 K~~V~eA~~~aLda~~~~~---~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~ 455 (1974)
--.-+- ..|+....|. ...+.++.+.+...++|-|+.|-..+.+++-..+..++. ....+.+.+.|+++.+++
T Consensus 215 ~EW~qi---~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls 290 (734)
T KOG1061|consen 215 TEWGQI---FILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLS 290 (734)
T ss_pred hhhhHH---HHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeec
Confidence 554443 3455555541 123557889999999999999999999999888876654 111234666777776664
Q ss_pred CC
Q 000166 456 DG 457 (1974)
Q Consensus 456 Ds 457 (1974)
-.
T Consensus 291 ~~ 292 (734)
T KOG1061|consen 291 SE 292 (734)
T ss_pred cc
Confidence 33
No 72
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=91.48 E-value=1.5 Score=55.89 Aligned_cols=119 Identities=20% Similarity=0.127 Sum_probs=87.4
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH
Q 000166 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1974)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~ 405 (1974)
.+..|...+.|++-.|-..+++.++.+ .-....+.++.-+++..+.|+.++..+|-..- .+..
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 478888888888887777666666542 23455677888889999999987775555321 2346
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 406 e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
+-+..+|++..|.||.+.+.-|... . . ...+|.+...+.|.+++||.+|..+++.+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l-~---~-------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGEL-P---R-------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhh-c---c-------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 7788889999999999888776543 1 1 23456677889999999999999988544
No 73
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=91.46 E-value=0.81 Score=47.95 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=60.5
Q ss_pred CCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHH-----Hh-ccCchhHHHHHHHHHH
Q 000166 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILK-----CL-GDNKKHMRECTLTVLD 961 (1974)
Q Consensus 890 p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~-----~l-~D~K~~vR~aa~~ald 961 (1974)
+....+++.+|++||.+.|-+++..||.++..+..-.|+.|..+.. .++-.++. .. .|.-..||+.+.+.+.
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 4456899999999999999999999999999999999999988743 23333322 12 2456799999999999
Q ss_pred HHH
Q 000166 962 AWL 964 (1974)
Q Consensus 962 a~~ 964 (1974)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 996
No 74
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=9.3 Score=51.27 Aligned_cols=292 Identities=18% Similarity=0.222 Sum_probs=181.2
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-h
Q 000166 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-V 404 (1974)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~ 404 (1974)
|...|++=|..+|..||.+|+..++.|+.. --++-+.|.+-+.++-.|+.||.-+.-|+--+... .-++.+ +
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHHh
Confidence 567888888899999999999999999843 34788999999999999999999777777777665 233333 4
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhh-----------------CCCCHHHHHHHHH
Q 000166 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----------------NDGTPEVRDAAFS 467 (1974)
Q Consensus 405 ~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l-----------------~Ds~~~VR~aA~~ 467 (1974)
+......|..|++.|-..++.++.+..+..+. .+. ..+.+++.+++.| .|+.--||
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~----- 253 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR----- 253 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-----
Confidence 45666788999999999999999998876542 222 2244566555443 44444443
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000166 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1974)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p 547 (1974)
+-.+++++|.. |+........++.... +.+ . +
T Consensus 254 -iLrlLriLGq~---------d~daSd~M~DiLaqva----tnt---------------d---------------s---- 285 (866)
T KOG1062|consen 254 -ILRLLRILGQN---------DADASDLMNDILAQVA----TNT---------------D---------------S---- 285 (866)
T ss_pred -HHHHHHHhcCC---------CccHHHHHHHHHHHHH----hcc---------------c---------------c----
Confidence 33445555532 3333333333332210 000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH
Q 000166 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (1974)
Q Consensus 548 ~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~ 627 (1974)
++.. -..+-.|-+. -+.++- .+=+-|.-|+.-+-+
T Consensus 286 ---------------------------skN~-------GnAILYE~V~-TI~~I~----------~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 286 ---------------------------SKNA-------GNAILYECVR-TIMDIR----------SNSGLRVLAINILGK 320 (866)
T ss_pred ---------------------------cccc-------hhHHHHHHHH-HHHhcc----------CCchHHHHHHHHHHH
Confidence 0000 0001111111 111111 122346666666665
Q ss_pred HHHhhhccc--hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHH
Q 000166 628 QVEAVQNLD--QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKC 705 (1974)
Q Consensus 628 ~v~~~~~~~--~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~ 705 (1974)
++...+... .....|.|.+..+| .++++ -+.++-.|+ |=.|+-.|..+-|+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~------------------~avqr----Hr~tIleCL-----~DpD~SIkrralEL 373 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDP------------------TAVQR----HRSTILECL-----KDPDVSIKRRALEL 373 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCc------------------HHHHH----HHHHHHHHh-----cCCcHHHHHHHHHH
Confidence 554433221 12333444443332 12222 122333333 33567789999999
Q ss_pred HHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccC
Q 000166 706 LTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (1974)
Q Consensus 706 L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~ 752 (1974)
+..+...-...+++.+++.++-+. .+....+|...|+.+.+.|-..
T Consensus 374 s~~lvn~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 374 SYALVNESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHhccccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999998666 9999999999999999999974
No 75
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=0.57 Score=60.08 Aligned_cols=101 Identities=26% Similarity=0.413 Sum_probs=81.0
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000166 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1974)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1974)
..+.++||-.=.|==|.| + ....+| -|.+++||+|+...|-.++..||.+|..+..=+|..|-.+ .+-|
T Consensus 12 ~~l~~pDWa~NleIcD~I----N--~~~~~~---~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLI----N--STEGGP---KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHHHHHHH----h--cCccCc---HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 356788997655433333 2 122222 5999999999999999999999999999999999999865 5679
Q ss_pred hHHHHHHhccC--chhHHHHHHHHHHHHHHhccc
Q 000166 938 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL 969 (1974)
Q Consensus 938 ~~~il~~l~D~--K~~vR~aa~~alda~~~~~gl 969 (1974)
+..++.+++.+ -..||+-++..|++|..+.+-
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 99999999887 458999999999999988763
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=90.83 E-value=4.4 Score=51.90 Aligned_cols=145 Identities=15% Similarity=0.031 Sum_probs=92.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000166 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1974)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1974)
.|+.-+++.+.++|..+++.+.. ++. +-...|+.-|+|.+..|-..|+.++|.+-.. .
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~------r~~------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~ 178 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGA------HRH------DPGPALEAALTHEDALVRAAALRALGELPRR----------L 178 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHh------hcc------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------c
Confidence 46777888999999999976653 221 2234677777899999999999999887644 3
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhh
Q 000166 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1974)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1974)
.+|.+...+.|..+.||.+|+.++-.. |-..-++.+..+...+ ++..+..+..+++.. . ....+..
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~----~----~~~a~~~ 244 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA----G----GPDAQAW 244 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC----C----chhHHHH
Confidence 355577779999999999999998333 3333334344433322 223345555554422 1 1134444
Q ss_pred HhhhccCCChHHHHHHHHHHHHH
Q 000166 1017 ASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
+...+.|.. ||..+-.+|+.+
T Consensus 245 L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 245 LRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred HHHHhcChh--hHHHHHHHHHHc
Confidence 555566644 777777777644
No 77
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=9.2 Score=50.88 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=80.9
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcC
Q 000166 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG 927 (1974)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG 927 (1974)
.+|..-+.-+++.-+++++.-+|+-+|+=.-.|++.-| ++|++..||+++.++|-.=...+-+.=+.+-..|.
T Consensus 312 ~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 312 EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 34445556677888999999999999999999997543 69999999999977765411122111122222221
Q ss_pred ---hhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 928 ---PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 928 ---~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
-.|--++..++|-+++-++|.....-.+. +..+-+++. + .|.+|..+++-|.+.|+..
T Consensus 385 ~cav~Fp~~aatvV~~ll~fisD~N~~aas~v----------------l~FvrE~ie--k-~p~Lr~~ii~~l~~~~~~i 445 (948)
T KOG1058|consen 385 ACAVKFPEVAATVVSLLLDFISDSNEAAASDV----------------LMFVREAIE--K-FPNLRASIIEKLLETFPQI 445 (948)
T ss_pred HHhhcChHHHHHHHHHHHHHhccCCHHHHHHH----------------HHHHHHHHH--h-CchHHHHHHHHHHHhhhhh
Confidence 24445566666666666776665422222 122223332 1 3566777777776666665
Q ss_pred CC
Q 000166 1005 SG 1006 (1974)
Q Consensus 1005 ~~ 1006 (1974)
++
T Consensus 446 rS 447 (948)
T KOG1058|consen 446 RS 447 (948)
T ss_pred cc
Confidence 54
No 78
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.73 E-value=36 Score=45.50 Aligned_cols=253 Identities=17% Similarity=0.159 Sum_probs=160.7
Q ss_pred HHHHHhhchhhhHHHHHHHHhh-----ccCchhHHHHHHHHHHHHHhhCCCc--cC-hhHHHhhchhhhcCCChhHHHHH
Q 000166 117 FMLWVELEAVDVFLDVMEKAIK-----NKVAKAVVPAIDVMFQALSEFGAKI--IP-PKRILKMLPELFDHQDQNVRASS 188 (1974)
Q Consensus 117 ~l~~vE~e~~~~v~e~ll~~~~-----~K~PKvvaaai~~l~~~l~~FG~kv--v~-~K~ilk~l~~lf~h~dk~VR~ea 188 (1974)
+-.|+|....+++-+.++..++ .|+|=++---+..+...+..|--.- .+ +.+++.++=...++.|++||--.
T Consensus 26 ~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrv 105 (892)
T KOG2025|consen 26 LAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRV 105 (892)
T ss_pred HHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHH
Confidence 3445555555555555544444 6888888888888888888876421 11 56678888888888999999777
Q ss_pred HHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCC
Q 000166 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPP 268 (1974)
Q Consensus 189 ~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~ 268 (1974)
..++--+---+|. +-+.+|++|+..+
T Consensus 106 lqila~l~d~~~e--idd~vfn~l~e~l---------------------------------------------------- 131 (892)
T KOG2025|consen 106 LQILALLSDENAE--IDDDVFNKLNEKL---------------------------------------------------- 131 (892)
T ss_pred HHHHHHHhccccc--cCHHHHHHHHHHH----------------------------------------------------
Confidence 6665544443331 2233444444333
Q ss_pred CCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHH
Q 000166 269 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQ 347 (1974)
Q Consensus 269 ~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~ 347 (1974)
..++.+.-=-.|.+|+-.|-.+-..|+ ++--++++.|+.+|. |+|--|-..|+-
T Consensus 132 ----------------------~~Rl~Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 132 ----------------------LIRLKDREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred ----------------------HHHHhccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 333333333456666655544433222 234567888899998 999999999988
Q ss_pred HHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHH
Q 000166 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1974)
Q Consensus 348 ~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L 427 (1974)
||.-= ...+|-++||-+|-+..+|.-+ |
T Consensus 187 nI~vd------------nsTlp~IveRarDV~~anRrlv---------Y------------------------------- 214 (892)
T KOG2025|consen 187 NISVD------------NSTLPCIVERARDVSGANRRLV---------Y------------------------------- 214 (892)
T ss_pred hhccC------------cccchhHHHHhhhhhHHHHHHH---------H-------------------------------
Confidence 87532 3457889999999887766421 1
Q ss_pred HHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCC-----HHHHHHHHHHHhc
Q 000166 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD-----DVRRNKLSEMIAG 502 (1974)
Q Consensus 428 ~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld-----~~kk~KI~e~~~~ 502 (1974)
.||++....-. .. ++..+-.+-.+|||+.-+||.|+..++..=.-.+.+..+-..|+.|| +...+.|+.++++
T Consensus 215 ~r~lpkid~r~-ls-i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 215 ERCLPKIDLRS-LS-IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHhhhhhhhhh-hh-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11222110000 00 12234456689999999999999999988665666666778888886 6677778888875
No 79
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.45 E-value=2.1 Score=48.78 Aligned_cols=135 Identities=22% Similarity=0.260 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHhc-cccccchhhhHHHH------------HHHhccCCHHHHHHHHHHHHHHHHhcC---------
Q 000166 341 VAVEAIQAIGNLARGLR-THFSGSSRFLLPVL------------LEKLKEKKPTVAESLTQTLQAMHKAGC--------- 398 (1974)
Q Consensus 341 vv~~A~~~i~~LA~gLr-~~F~~y~~~~l~~l------------LeklKEKK~~V~eA~~~aLda~~~~~~--------- 398 (1974)
|-+.|+.|++.|++... +.|..|-..++|.- -=-++|--+.||.++..+|.++... +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG-SKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc-cHHHHHHHHh
Confidence 45679999999999964 56888988888876 2235788899999999999998753 1
Q ss_pred --------CChh--------hhHHHHHHHhhc-CCchhHHHHHHHHHHHHhhCChhHHh-HhhhhhHHHHHhhhCCCCHH
Q 000166 399 --------LNLV--------DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (1974)
Q Consensus 399 --------~~l~--------~~~e~i~~al~~-KnP~vk~etl~~L~r~l~~~~~~~~~-~~~k~~~~~l~k~l~Ds~~~ 460 (1974)
++|. ++...+..++.+ +++.+-.++++-|+-.+.++|-.-+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1222 233445666764 46888889999999888887755443 56677888888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000166 461 VRDAAFSVLAAIAKSV 476 (1974)
Q Consensus 461 VR~aA~~~l~~lmk~~ 476 (1974)
||-++..|++.+.-..
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999887543
No 80
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=3.5 Score=53.49 Aligned_cols=186 Identities=17% Similarity=0.187 Sum_probs=134.2
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCC---CCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc-
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pK---i~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y- 363 (1974)
.-..++.|.+=+.+.++.+.+-++++..+ |...--..++..|-..+. |.|-.+...|+-++..||.|--..-.-+
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 45667788888889999999999876444 332212245666666776 8899999999999999999987665555
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh------HHHHHHHhhcCCc--hhHHHHHHHHHHHHhhCC
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV------VEDVKTSVKNKVP--LVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~------~e~i~~al~~KnP--~vk~etl~~L~r~l~~~~ 435 (1974)
-...+|.++.-+-.....|+|.+.=||-.++.. +..+-|+ ++.++..+.+..+ .+|. +.|.-.-|....
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn--~tW~LsNlcrgk 226 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN--ATWTLSNLCRGK 226 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHH--HHHHHHHHHcCC
Confidence 345678888999999999999998888888765 3344433 3566666666665 4443 445555554432
Q ss_pred -hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 436 -KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 436 -~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
+++-...++.++|++..++.+.|++|..-|+-++..+...--
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 322234568899999999999999999999988887664433
No 81
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.27 E-value=0.34 Score=38.94 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=25.1
Q ss_pred hhhHhhhccCCChHHHHHHHHHHHHHHHhc
Q 000166 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1974)
Q Consensus 1014 ~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~ 1043 (1974)
+..+..+++|.+++||.+|-.+|+.+++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 345778899999999999999999998864
No 82
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.14 E-value=0.96 Score=51.32 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=96.6
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHH---H
Q 000166 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---A 923 (1974)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~l---A 923 (1974)
.|...-| +.|.+.+-.++-=-|-=|.+.+.++|.. +..+|-|-. -.|+..||.-|.-.|..+...+|+++++| .
T Consensus 34 Ldy~~~L-pif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 34 LDYHHYL-PIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred cchhhHH-HHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3433333 3577777666666677788888888887 778899987 89999999999999999999999999999 8
Q ss_pred HhcChhHHhhhhhhhHHHHHHhcc------------CchhHHHHHHHHHHHHHHhccchhh
Q 000166 924 SAMGPAVEKSSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVHLDKM 972 (1974)
Q Consensus 924 ~amG~~~~k~~k~l~~~il~~l~D------------~K~~vR~aa~~alda~~~~~gl~~~ 972 (1974)
..+|+..-+|-|.++|.+- .|.+ ++.++++-..++|.......|=+.+
T Consensus 112 ~~vG~aLvPyyrqLLp~ln-~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPVLN-LFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 8889999999999988654 3333 4478888888888888777775554
No 83
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=90.09 E-value=14 Score=51.47 Aligned_cols=287 Identities=16% Similarity=0.219 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh----hccchhhc
Q 000166 617 ERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL----CLLGISER 692 (1974)
Q Consensus 617 ~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~----~l~~lveK 692 (1974)
.|++|+|-+...-.-. ..+.-.|-++=|+.+. |.|+-.+|+...++.|+.+...-..+....+.. ++|.|-.=
T Consensus 439 tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l--~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYI-DDEVKLDRVLPYFVHL--LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred hHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHH--hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 4688888776332221 1122355566666543 899999999999999999887667777666655 45555444
Q ss_pred cccc---hhhhHHHHHHHHHHHh-hchHhHHHHHHH--hhhhcCCh----hhHHH-HHHHHHHHHHHhccCccchHhHHH
Q 000166 693 VADI---KTRAHAMKCLTTFSEA-VGPGFIFERLYK--IMKDHKNP----KVLSE-GILWMVSAVEDFGVSHLKLKDLID 761 (1974)
Q Consensus 693 lgD~---K~r~~a~e~L~~~aE~-~~p~~V~~~l~~--~~~~~KnP----Kv~ae-~l~wl~~ai~eFG~~~l~~K~lI~ 761 (1974)
+.|. -+|-.-..+|-.+|+. +..- .+.+.+. ++.+.-|- +...+ -+.-| .+.+-+
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFl-e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~ 581 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFL-ELTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQ 581 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHH-HHHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHH
Confidence 4452 3455555555555552 1111 1111100 01111110 00000 00000 112222
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCC
Q 000166 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (1974)
Q Consensus 762 ~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~ 841 (1974)
.+-.+ |..+.|.||.+=++-++.+|.|.| |...
T Consensus 582 ~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFG-----------------------k~ks----------------------- 614 (1431)
T KOG1240|consen 582 MVSSL-LSDSPPIVKRALLESIIPLCVFFG-----------------------KEKS----------------------- 614 (1431)
T ss_pred HHHHH-HcCCchHHHHHHHHHHHHHHHHhh-----------------------hccc-----------------------
Confidence 33445 566667777777776776665443 2100
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccc-hHHHHhhhccchhHhHHHHHHHHHH
Q 000166 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKNLVMATLITLG 920 (1974)
Q Consensus 842 ~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ge-L~~aLk~Rl~DsNk~lv~~al~ii~ 920 (1974)
+|. |=+-+++=++|++|.-|-.-.|.+-.+. -++.+--..| |++-|.+-|.|.--.|+..||.++.
T Consensus 615 ND~---------iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls 681 (1431)
T KOG1240|consen 615 NDV---------ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLS 681 (1431)
T ss_pred ccc---------hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHH
Confidence 111 4456778899999999999999987654 3455542233 5666788889999999999999887
Q ss_pred HHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch----hhhHHHHHHHh
Q 000166 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALT 981 (1974)
Q Consensus 921 ~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~----~~~~~i~~~L~ 981 (1974)
.+-+- |-==++|+.-++..++--|-.-..+||.++..-+-++..+.+-. .++|.|-.+|+
T Consensus 682 ~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 682 ILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 77653 22224567777888888888888999999988888888777632 23555666655
No 84
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.56 E-value=8.7 Score=50.89 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=128.6
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHh-hhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKL-ASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L-~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~ 366 (1974)
.|.+.-|+++|==.||-|+--|+++ ++-|- -..+-+.-|+..|.|....|+..|.++|..||+.=.++|=+.+..
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ 222 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPL 222 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHH
Confidence 4677889999999999999999985 45332 122335567888889999999999999999999888877666655
Q ss_pred hHHHH--------------------------HHHhccCCHHHHHH------HHHHHHHHHHhc--------CCChhhhHH
Q 000166 367 LLPVL--------------------------LEKLKEKKPTVAES------LTQTLQAMHKAG--------CLNLVDVVE 406 (1974)
Q Consensus 367 ~l~~l--------------------------LeklKEKK~~V~eA------~~~aLda~~~~~--------~~~l~~~~e 406 (1974)
++--| -.|+=|.=.+..+. +-+|++++.... .-+..-|++
T Consensus 223 ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvq 302 (877)
T KOG1059|consen 223 FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQ 302 (877)
T ss_pred HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHH
Confidence 54332 22222333333332 235666665420 011334667
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000166 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLER 483 (1974)
Q Consensus 407 ~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~ 483 (1974)
-+-.++..--|.+|.-.+.-+...+.++++++. ..-..+++||+|.++.||=.|... ++-+|.++.+..
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdL---l~gmVskkNl~e 371 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDL---LYGMVSKKNLME 371 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHH---HHHHhhhhhHHH
Confidence 777888899999999999999999998877654 234568999999999999776655 556666665443
No 85
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=89.45 E-value=83 Score=41.29 Aligned_cols=353 Identities=16% Similarity=0.174 Sum_probs=201.1
Q ss_pred hhhhHHHHHHHhccC-------CHHHHHHHHHHHHHHHHhcCCC--hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000166 364 SRFLLPVLLEKLKEK-------KPTVAESLTQTLQAMHKAGCLN--LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1974)
Q Consensus 364 ~~~~l~~lLeklKEK-------K~~V~eA~~~aLda~~~~~~~~--l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1974)
+.-++|.+|.-|--. -=++--|+..||.-+++. |-. +..+++-+-.-+.+.+..-|....--+-..+...
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~-~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL-KGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH-hhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 344677766555322 225667889999988775 321 3334455555566777777766665566666666
Q ss_pred ChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCc
Q 000166 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSA 514 (1974)
Q Consensus 435 ~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~ 514 (1974)
....+.++..+.+|.+...++|+.--|.+.++.|+|.|.-++-+- +.|- ..|-..--+-+.-..+- |.
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~-i~p~-~Hl~~~vsa~liGl~D~---------p~- 465 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI-ISPC-GHLVLEVSASLIGLMDC---------PF- 465 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-cCcc-ccccHHHHHHHhhhhcc---------ch-
Confidence 677777888889999999999999999999999999999887642 2211 11111111111111110 00
Q ss_pred cccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHH
Q 000166 515 RVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEI 594 (1974)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~ 594 (1974)
+. ....... ....--- | ++ . ..+ +.-+ .-.-
T Consensus 466 -~~-------------~ncsw~~-~nlv~h~-a-----------------------~a-----~---~~~-~S~l-~~fY 496 (858)
T COG5215 466 -RS-------------INCSWRK-ENLVDHI-A-----------------------KA-----V---REV-ESFL-AKFY 496 (858)
T ss_pred -HH-------------hhhHHHH-HhHHHhh-h-----------------------hh-----h---ccc-cchh-HHHH
Confidence 00 0000000 0000000 0 00 0 000 0000 1112
Q ss_pred HHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHH---HhcCCCccchHHHHHHHHHH----
Q 000166 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLV---CMLPGWSEKNVQVQQQVIEV---- 666 (1974)
Q Consensus 595 e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~~~~~~~~~Lvr~l---~~~PgwkesNfqV~~k~lei---- 666 (1974)
++.+..++.. +.+...+...|..+++.|...|.- .+. .++++.-+. .++ -|.-.+|+...+..
T Consensus 497 ~ai~~~Lv~~---t~~~~Ne~n~R~s~fsaLgtli~~~~d~---V~~~~a~~~~~~~~k---l~~~isv~~q~l~~eD~~ 567 (858)
T COG5215 497 LAILNALVKG---TELALNESNLRVSLFSALGTLILICPDA---VSDILAGFYDYTSKK---LDECISVLGQILATEDQL 567 (858)
T ss_pred HHHHHHHHHH---HHhhccchhHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHH---HHHHHHHhhhhhhhHHHH
Confidence 2222223222 344466788899999999887765 222 234443322 222 23344444433321
Q ss_pred -HHHHHHhcCCCCccchhhhccchhhcccc-c-hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHH
Q 000166 667 -INYLAATATKFPKKCVVLCLLGISERVAD-I-KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMV 743 (1974)
Q Consensus 667 -l~~la~~~~~fs~~~~~~~l~~lveKlgD-~-K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~ 743 (1974)
+..+-++ ...++..+|-+-+- + -+-+...+++..+-|...|.++++.++-... -|.
T Consensus 568 ~~~elqSN--------~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIs-------------al~ 626 (858)
T COG5215 568 LVEELQSN--------YIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAIS-------------ALS 626 (858)
T ss_pred HHHHHHHH--------HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHH-------------HHH
Confidence 1111111 12244444444443 2 2456678889999999999999999887642 223
Q ss_pred HHH-HHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000166 744 SAV-EDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1974)
Q Consensus 744 ~ai-~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~E 812 (1974)
..+ +.|- .-+..++.|+-.+ |.-++-.|-..|+.|+|.+-.-+|.+++.|-.++--.|.+.|..+
T Consensus 627 ~sl~e~Fe---~y~~~fiPyl~~a-ln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 627 TSLEERFE---QYASKFIPYLTRA-LNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred HHHHHHHH---HHHhhhhHHHHHH-hcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 322 2343 2355788898887 999999999999999999999999999988777766676666544
No 86
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=89.33 E-value=1.7 Score=59.93 Aligned_cols=202 Identities=16% Similarity=0.168 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCChhHHHHHHHHHhc-chhHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHh
Q 000166 300 SERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLIT-DVNIA-VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1974)
Q Consensus 300 keRkEALe~L~~L~~~p--Ki~~~dy~dL~~~Lkk~l~-DsNv~-vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLekl 375 (1974)
-+|+-|.-.|..+.+.- -+. .-|-.|...|-+-+. +.+.+ --...++....++.-|+..|.+ ....+|.++...
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhc
Confidence 46777766666554311 110 012223344444443 33333 6667778888888888888888 888999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCC-hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhh
Q 000166 376 KEKKPTVAESLTQTLQAMHKAGCLN-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1974)
Q Consensus 376 KEKK~~V~eA~~~aLda~~~~~~~~-l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l 454 (1974)
+--=..||-++..|+..+++..|.. +.-+++.+..-++.----+|.+...-+..++...--..+.++.--++|++..++
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 9999999999999999999874322 334456666666655555666666666666654322222233344789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhChhH-------HHHHhhcCCHHHHHHHHHHHhcC
Q 000166 455 NDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAGS 503 (1974)
Q Consensus 455 ~Ds~~~VR~aA~~~l~~lmk~~Ge~~-------l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1974)
.|.+..||++|..+++.++.+++... |-+.|-...+.-++-|+.+++.+
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldps 961 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPS 961 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcc
Confidence 99999999999999999999998543 55555555566677778777754
No 87
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.27 E-value=20 Score=50.11 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=74.9
Q ss_pred cchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHH
Q 000166 687 LGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1974)
Q Consensus 687 ~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~---~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~ 763 (1974)
.+|-|| |-.+|....+-+.-+|=-+|..-|-+++++.+ ...--+-|+.-+|..++.+++---+.-.-++.+++-+
T Consensus 624 TfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v 701 (1431)
T KOG1240|consen 624 TFLNDK--DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDV 701 (1431)
T ss_pred HHhcCc--cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhh
Confidence 334444 45666666666665555555553444443332 3456678888888888888765545445556666655
Q ss_pred hhhcCCCccHHHHHHHHHHHHHHHhhhC---------chhHhhhh
Q 000166 764 KDTGLQSSAAATRNATIKLLGALHKFVG---------PDIKGFLA 799 (1974)
Q Consensus 764 k~~~L~~sN~~VR~aAi~Ll~~ly~~~G---------~~l~~~l~ 799 (1974)
--. |-|.|.=||.++..++.++|+.++ |-|++||+
T Consensus 702 ~Pl-L~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 702 LPL-LCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred hhh-eeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 556 899999999999999999999888 56888885
No 88
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=88.86 E-value=2.3 Score=44.62 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=67.7
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchh--hhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~--~~l~~l 371 (1974)
+..++|+ .+.++-.++.. .+..+.+++++|+++|.+.|..++..|+.+++.+.+-=++.|..++. .++..+
T Consensus 13 ~~~p~~~----~i~~i~d~~~~---~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l 85 (115)
T cd00197 13 NMGPDWP----LIMEICDLINE---TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVEL 85 (115)
T ss_pred CCCCCHH----HHHHHHHHHHC---CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHH
Confidence 3445664 44444444432 24568899999999999999999999999999999999999998843 233333
Q ss_pred HHHh-------ccCCHHHHHHHHHHHHHHH
Q 000166 372 LEKL-------KEKKPTVAESLTQTLQAMH 394 (1974)
Q Consensus 372 Lekl-------KEKK~~V~eA~~~aLda~~ 394 (1974)
+ +| ++.-.+|++.+.+.+.+|+
T Consensus 86 ~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 86 L-KFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred H-HhhccccccCCCChHHHHHHHHHHHHHh
Confidence 2 22 2346789999999998885
No 89
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.21 E-value=1.1e+02 Score=44.57 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHhccccchH------HHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcC-ChHHHHHHHHHHH
Q 000166 1208 VLDILLRWFVLQFCKSNTT------CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVREKMRELT 1280 (1974)
Q Consensus 1208 ~lDlllkw~tlr~~dtN~~------vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd-~ke~vR~~vr~i~ 1280 (1974)
.++|+...+....-+-++- --.+.+.|+..||-.-.-.-.-|+.--+..+.|||..|+-. ....|-..|-.|+
T Consensus 1025 ~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Il 1104 (1692)
T KOG1020|consen 1025 VLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQIL 1104 (1692)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHH
Confidence 4666666665555444422 23467888888887777777777777888999999999422 3334555566666
Q ss_pred HH-HhhccCccchHHHHH-----hhhccCChhhHhHHHHHHHHHHHh--hcCcc---ccc--cchHHHHHHHhc
Q 000166 1281 KQ-IVNFYSATKTLPYIL-----EGLRSKNNRTRIECVDLVGFLIDH--HGAEI---SGQ--LKSLQIVASLTA 1341 (1974)
Q Consensus 1281 ~~-~~~vyp~skvf~~l~-----~glksKN~r~R~EcL~el~~li~~--~G~~v---~~~--~Kal~~iA~~i~ 1341 (1974)
+. ++++--+|--|-+-+ .-+-.-|-++=.||..-||.+..+ +|+.+ |.. .|.|+.|.....
T Consensus 1105 e~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~ 1178 (1692)
T KOG1020|consen 1105 ECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNN 1178 (1692)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 43 344444455554333 334556778899999999999996 88776 422 466777666543
No 90
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.17 E-value=0.5 Score=42.66 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHH
Q 000166 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (1974)
Q Consensus 911 lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda 962 (1974)
+...|+..+|.++...+..+..|...++|.++..|.|....||.+|..||..
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4567888999988888999999999999999999999999999999988753
No 91
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.70 E-value=2.7 Score=46.21 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=72.4
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+. -.+..=.+.+++|+++|...|.+|+..|+..++.+.+-=|+.|... .+-++..|
T Consensus 13 l~~~dw~~il~icD~I~-------~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL 85 (144)
T cd03568 13 LTSENWGLILDVCDKVK-------SDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL 85 (144)
T ss_pred CCCcCHHHHHHHHHHHh-------cCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 45567854333333322 1223346899999999999999999999999999999999999866 56677776
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKE-KKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKE-KK~~V~eA~~~aLda~~~~ 396 (1974)
...+.+ .-+.|++-+.+.+..|...
T Consensus 86 ~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 86 KKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 666666 5778888888888888764
No 92
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=87.05 E-value=85 Score=39.95 Aligned_cols=314 Identities=16% Similarity=0.214 Sum_probs=183.4
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHh----cCCCccc-hHHHHHHHHHHHHHHHHh---c
Q 000166 609 QLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAAT---A 674 (1974)
Q Consensus 609 ~L~s~~WK~RL~a~E~l~~~v~~~~~~------~~~~~~Lvr~l~~----~Pgwkes-NfqV~~k~leil~~la~~---~ 674 (1974)
||.+++=-.|++||..|...+...+.. ....+++++++.. +++=++. +.++....+..+..+... .
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 466677778999999999888774322 2224555555543 2333443 777888888888877743 2
Q ss_pred CCCCccchhhhccchhhccccch-hhhHHHHHHHHHHH-hhchHhH----HHHHHHhhhh----cCChhhHHHHHHHHHH
Q 000166 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIMKD----HKNPKVLSEGILWMVS 744 (1974)
Q Consensus 675 ~~fs~~~~~~~l~~lveKlgD~K-~r~~a~e~L~~~aE-~~~p~~V----~~~l~~~~~~----~KnPKv~ae~l~wl~~ 744 (1974)
+.++...+..++..+++.+.++. .|..+...|..+++ .+++.++ .++++..+.. -++-=+..|.|.-+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 45666666678888888888865 46777777777776 5666653 2333333222 3445567888888888
Q ss_pred HHHHhccCcc-chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000166 745 AVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1974)
Q Consensus 745 ai~eFG~~~l-~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~ 823 (1974)
.+..|--.-+ ....=++.+-.. +=|+...||+.|+.++-.+-+.+|+. ..+...+.+.|+..-.++
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~---------~~~s~~~~~~~~~~~~~~--- 227 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPN---------KELSKSVLEDLQRSLENG--- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChh---------HHHHHHHHHHhccccccc---
Confidence 8877753211 112222233333 66889999999999999998888842 111122222222110000
Q ss_pred CccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCC-CChHHHHHHHHHHHHHHHHcccCCCCC-CccchHHHHh
Q 000166 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLR 901 (1974)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d-~~WK~RkEaLe~v~~il~~ankrI~p~-~~geL~~aLk 901 (1974)
+ +-.-+.+.+.+-+.+ .+.+.=-..=-.+-.++. ++++.-. .+.+.+....
T Consensus 228 --~-----------------------~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 228 --K-----------------------LIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG--SSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred --c-----------------------HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC--CchhhccHhHhHHHHHHH
Confidence 0 000011112222233 122111111112333342 2333332 2477888888
Q ss_pred hhccchhHhHHHHHHHHHHHHHHhcChhH---HhhhhhhhHHHHHHhccCch-----hHHHHHHHHHHH
Q 000166 902 GRLYDSNKNLVMATLITLGAVASAMGPAV---EKSSKGVLSDILKCLGDNKK-----HMRECTLTVLDA 962 (1974)
Q Consensus 902 ~Rl~DsNk~lv~~al~ii~~lA~amG~~~---~k~~k~l~~~il~~l~D~K~-----~vR~aa~~alda 962 (1974)
.+++.+|..+...|+.+=..+.-++.+.- .+..+.+..|+...+.-.+. .+|.+++.++..
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ 349 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCN 349 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhc
Confidence 99999999999999988888877776543 46678888999887765443 456666665543
No 93
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.58 E-value=1e+02 Score=39.76 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=127.2
Q ss_pred HHHhh-cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000166 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1974)
Q Consensus 857 ~l~~~-l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1974)
.+++- ....++-.|.-+++-+-.++ ||........+++..+...+ ...+......++.++.-|+.|+=-.-.+.+
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~Lv---NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLV---NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44443 45556999999999998888 57555554566777777777 677777788889999888888733334666
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc--------c--c-----hhhhHHHHHHHhcc--cCCcchHHHHHHHH
Q 000166 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H--L-----DKMVPYVTTALTDA--KLGAEGRKDLFDWL 997 (1974)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~--------g--l-----~~~~~~i~~~L~~~--~~~p~~R~e~l~wL 997 (1974)
..++..+++.|+| +.+...+..++.-.+... + . ..++..+...|.+. ..+...|..-|.=|
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 6778888999999 667777777777666541 1 1 12233333333311 00122344444444
Q ss_pred HHHhccCCC---CcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000166 998 SKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1974)
Q Consensus 998 ~~~l~~~~~---~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1974)
.--+.+.+. .+++..+++-++.+|.=.+++||.++=+.|..++..- .+.+..+++.|
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 444444443 2455555656888998888899999999999888877 77777776654
No 94
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.43 E-value=2.2 Score=55.06 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=78.2
Q ss_pred hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 293 ~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
.+...+|--=.|.=|.+..--..+| |.+++|||+|+..|-.|+.+|+.+|+.+.+--|..|... .+-|+..
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~-------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK-------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566777655555554433222233 999999999998888999999999999999999999866 6789999
Q ss_pred HHHHhccC--CHHHHHHHHHHHHHHHHh
Q 000166 371 LLEKLKEK--KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 lLeklKEK--K~~V~eA~~~aLda~~~~ 396 (1974)
|+.++|.+ =..|++-+...|++|...
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 99999988 456899999999999875
No 95
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.38 E-value=4.8 Score=44.06 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=75.4
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+. +. +..-.+-+++|+++|+..|.+|+..|+..++.+.+-=|..|... .+.++..|
T Consensus 14 l~~~dw~~ileicD~In---~~----~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 14 NREEDWEAIQAFCEQIN---KE----PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCCHHHHHHHHHHHH---cC----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 45677865444444432 11 22235899999999999999999999999999999999999877 46788888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
+..+..| -+.|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888653 478999999999999874
No 96
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.18 E-value=39 Score=40.92 Aligned_cols=138 Identities=19% Similarity=0.280 Sum_probs=103.9
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000166 608 GQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1974)
Q Consensus 608 ~~L~s~~WK~RL~a~E~l~~~v~~~~~---~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~ 684 (1974)
.-|.+.++..|-.|++-|...++..+. .....++|+.++..+ +.| ..++...+..+..++ +...|+...+..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~r--l~D--~~~~~~~l~gl~~L~-~~~~~~~~~~~~ 80 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSR--LDD--HACVQPALKGLLALV-KMKNFSPESAVK 80 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHH--hcc--HhhHHHHHHHHHHHH-hCcCCChhhHHH
Confidence 467889999999999999988888543 234568888888753 433 234444478788777 468899999888
Q ss_pred hccchhhccccc----hhhhHHHHHHHHHHHhh-------chHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhcc
Q 000166 685 CLLGISERVADI----KTRAHAMKCLTTFSEAV-------GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1974)
Q Consensus 685 ~l~~lveKlgD~----K~r~~a~e~L~~~aE~~-------~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~ 751 (1974)
++..+.+++... +.|-.+-++|..+.+.. +.+||.. ++..+-.-|.|+..--++..+..++.+|-+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~-~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG-FIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH-HHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 998888877664 46888888888887764 5566654 445557799999999999999888887664
No 97
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=86.04 E-value=8.4 Score=52.29 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=49.6
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 408 VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 408 i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
|..-++|.||.+|.-++.++.- + +- ..++..+++++.+|++|+.+.||+.|+-|++.+.++
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~-l---~~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSL-L---RV---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHh-c---Ch---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 3445679999999988888762 2 22 344688999999999999999999999999998854
No 98
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=85.68 E-value=19 Score=44.48 Aligned_cols=176 Identities=18% Similarity=0.232 Sum_probs=121.5
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l 368 (1974)
.....+.+.+|-.|..+...+..+. --+.+..|.+.+.|.+..|...|+.+++.+- . ...+
T Consensus 47 ~~~~~l~~~~~~vr~~aa~~l~~~~---------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------~---~~a~ 107 (335)
T COG1413 47 ELLKLLEDEDLLVRLSAAVALGELG---------SEEAVPLLRELLSDEDPRVRDAAADALGELG-------D---PEAV 107 (335)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhhc---------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------C---hhHH
Confidence 4566678889999999988743332 2467889999999999999999988555443 2 3456
Q ss_pred HHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchh------------HHHHHHHHHHHHhhCC
Q 000166 369 PVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLV------------RSLTLNWVTFCIETSS 435 (1974)
Q Consensus 369 ~~lLeklK-EKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~v------------k~etl~~L~r~l~~~~ 435 (1974)
+++++.+. |-...||..+..+|-.+... ..++.+...+++.+..+ |.....=|. ...
T Consensus 108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~----~~~ 177 (335)
T COG1413 108 PPLVELLENDENEGVRAAAARALGKLGDE------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG----ELG 177 (335)
T ss_pred HHHHHHHHcCCcHhHHHHHHHHHHhcCch------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH----HcC
Confidence 77777777 79999999888888766543 34677788888877333 211111111 111
Q ss_pred hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh--ChhHHHHHhhcCCHHHHHHHHHHH
Q 000166 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV--GMRPLERSIEKLDDVRRNKLSEMI 500 (1974)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~--Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1974)
.....+.+...++|....||.+|..+|+.+-... ....+...+.+-+...+.+.-..+
T Consensus 178 -------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 178 -------DPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred -------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 1335678889999999999999999999887763 334566666666655555554444
No 99
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.33 E-value=46 Score=45.03 Aligned_cols=135 Identities=20% Similarity=0.252 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh------
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA------ 396 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~------ 396 (1974)
..++...|+..-.|-.+..|..|++|||.+|-...+. ..|+..+|+-+.=|..-|++.+.-.+.-++.+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 4557777888888999999999999999999887765 45777777777766666655555444444433
Q ss_pred -----cCCC--------------------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh
Q 000166 397 -----GCLN--------------------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1974)
Q Consensus 397 -----~~~~--------------------------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1974)
.|.+ ...+++++.+.++...++|+.+++.=..|+|-..+..+- +.
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq----~~ 498 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQ----EL 498 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHH----HH
Confidence 1111 224567777888888899999998888888866554222 23
Q ss_pred hHHHHHhhhCCCC-HHHHHHHH
Q 000166 446 YVPICMECLNDGT-PEVRDAAF 466 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~-~~VR~aA~ 466 (1974)
+...|--+.+|++ +++||.+.
T Consensus 499 l~~vL~~~~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 499 LQGVLPLATADTDNPDLRDRGL 520 (734)
T ss_pred HHHHHhhhhccccChhhhhhHH
Confidence 3445556666664 59999987
No 100
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.15 E-value=4.5 Score=44.10 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHH
Q 000166 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPT----VAESLTQTLQAMHK 395 (1974)
Q Consensus 322 dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLeklKEKK~~----V~eA~~~aLda~~~ 395 (1974)
.=.+.+++|+++|...|.+++..|+..++.+.+--|..|... .+-++..|..-++.++.. |++-+.+.+..|..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999766 455777777767776665 79999999999987
Q ss_pred h
Q 000166 396 A 396 (1974)
Q Consensus 396 ~ 396 (1974)
.
T Consensus 119 ~ 119 (140)
T PF00790_consen 119 A 119 (140)
T ss_dssp H
T ss_pred H
Confidence 5
No 101
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.81 E-value=4.3 Score=43.93 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=70.2
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+ +-.+..=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+.++..|
T Consensus 13 l~~~dw~~~l~icD~i-------~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L 85 (133)
T smart00288 13 LLEEDWELILEICDLI-------NSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNEL 85 (133)
T ss_pred CCCcCHHHHHHHHHHH-------hCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHH
Confidence 4456675444433332 11233346899999999999999999999999999999999999766 34566666
Q ss_pred HHHhccCCH--HHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEKKP--TVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEKK~--~V~eA~~~aLda~~~~ 396 (1974)
...++.+.. .|++.+.+.+..|...
T Consensus 86 ~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 86 VKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 655555443 2899999999999875
No 102
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=84.55 E-value=2e+02 Score=40.67 Aligned_cols=206 Identities=15% Similarity=0.094 Sum_probs=118.3
Q ss_pred CCcccccCCCCchhhhhhh--ccCChHHH----HHHHHHHHHhhhcCCCCC--CChhHHHHHHHHHhc-chh-HHHHHHH
Q 000166 276 VDPVDILTPLEKSGFWEGV--KATKWSER----KDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVN-IAVAVEA 345 (1974)
Q Consensus 276 ~~pvdIl~klpk~~f~~~l--~s~KWkeR----kEALe~L~~L~~~pKi~~--~dy~dL~~~Lkk~l~-DsN-v~vv~~A 345 (1974)
+.+-|+.+++ ..|.+.+ ..+-|..| .--|..+..+.++-+-.. +--+...+.|-...- |.| ..+--+-
T Consensus 203 ~sR~D~~~~~--~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKll 280 (1133)
T KOG1943|consen 203 FSRTDVKDLL--LSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLL 280 (1133)
T ss_pred cccccHHHHH--HHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHH
Confidence 3444555555 3577775 23678888 344555555554333221 112345566666554 444 5566677
Q ss_pred HHHHHHHHHHhccc----------------------c------------------ccchhhhHHHHHHHhccCCHHHHHH
Q 000166 346 IQAIGNLARGLRTH----------------------F------------------SGSSRFLLPVLLEKLKEKKPTVAES 385 (1974)
Q Consensus 346 ~~~i~~LA~gLr~~----------------------F------------------~~y~~~~l~~lLeklKEKK~~V~eA 385 (1974)
.+|++.|.--.=++ | .-++..++--+|+-++|+-..||=+
T Consensus 281 vKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWS 360 (1133)
T KOG1943|consen 281 VKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWS 360 (1133)
T ss_pred HHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHH
Confidence 77777553221111 1 1234578888999999999999999
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHH-HHhhcCCch----hHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhC--C--
Q 000166 386 LTQTLQAMHKAGCLNLVDVVEDVK-TSVKNKVPL----VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN--D-- 456 (1974)
Q Consensus 386 ~~~aLda~~~~~~~~l~~~~e~i~-~al~~KnP~----vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~--D-- 456 (1974)
+.+.+--+... .+ .++.+++. ..+.+=||. .=-.++.+|+..-... -.+...+..++|.+++.+. +
T Consensus 361 aAKg~grvt~r--lp-~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG--lLlps~l~dVvplI~kaL~Yd~~~ 435 (1133)
T KOG1943|consen 361 AAKGLGRVTSR--LP-PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG--LLLPSLLEDVVPLILKALHYDVRR 435 (1133)
T ss_pred HHHHHHHHHcc--Cc-HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhhhhhhh
Confidence 99988888765 34 33333333 222233433 2224444444332110 1112345788999998873 2
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000166 457 ----GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1974)
Q Consensus 457 ----s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1974)
.-.-|||||+-++=++.+.-....|.+++..|
T Consensus 436 G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L 471 (1133)
T KOG1943|consen 436 GQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSL 471 (1133)
T ss_pred cccccccchHHHHHHHHHHHHhcCChhhhhHHHHHH
Confidence 23569999999888888776666566665544
No 103
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=83.42 E-value=5.9 Score=43.44 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=71.9
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+.. .+..=.+.+++|+++|...|.+++..|+..++.+.+--|..|... .+-++..|
T Consensus 17 l~~~dw~~ileicD~In~-------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l 89 (142)
T cd03569 17 LGEPDLASILEICDMIRS-------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDEL 89 (142)
T ss_pred cCccCHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 355677665555554421 123346899999999999999999999999999999999998765 45566666
Q ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLK-EKKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklK-EKK~~V~eA~~~aLda~~~~ 396 (1974)
..-+. ...+.|++-+...+..|...
T Consensus 90 ~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 90 KDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 66555 34556888899999999875
No 104
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.29 E-value=7.8 Score=41.90 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=72.3
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc-hh-hhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR-FLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y-~~-~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+..- +..=.+.+++|+++|...|.+++..|+.+++.+.+--|+.|... +. -++..|
T Consensus 13 ~~~~D~~~il~icd~I~~~-------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 13 LEEPDWALNLELCDLINLK-------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred cCCccHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 3456676544444443211 44457899999999999999999999999999999999999766 32 566666
Q ss_pred HHHhccC---CHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEK---KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEK---K~~V~eA~~~aLda~~~~ 396 (1974)
..-+..+ .+.|++-+.+.+..|..+
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6666653 567888899999999875
No 105
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=83.12 E-value=31 Score=42.30 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=96.1
Q ss_pred HHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCCh----hhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHH
Q 000166 1162 ELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR----KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPE 1237 (1974)
Q Consensus 1162 ~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~----~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~ 1237 (1974)
.+++||..-+ +.+..+|||.|...++.|.--+.+.+.-.. ..+|. +-++-|+
T Consensus 64 ~meqq~~~el-p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VId-aGvVpRf---------------------- 119 (526)
T COG5064 64 PMEQQFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVID-AGVVPRF---------------------- 119 (526)
T ss_pred chhHHhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHh-ccccHHH----------------------
Confidence 4666776655 889999999999999999988888775322 11222 1122222
Q ss_pred HHHHHHhcCCcccHhHHhh--------------------hhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHH-HH
Q 000166 1238 LFDTLRDEGYSLTESEAAV--------------------FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLP-YI 1296 (1974)
Q Consensus 1238 l~~~l~~~~y~lsd~EA~~--------------------flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~-~l 1296 (1974)
++.|.+.+-.|-+.||+- -+|.+|.-+-++.+.||+.. .=++..|-..|-.+. |+
T Consensus 120 -vefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQa---vWALGNiAGDS~~~RD~v 195 (526)
T COG5064 120 -VEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQA---VWALGNIAGDSEGCRDYV 195 (526)
T ss_pred -HHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHH---HHHhccccCCchhHHHHH
Confidence 333445555555666654 47899999989888888742 334444544444443 44
Q ss_pred Hh--------hhccCChh--hHhHHHHHH-HHHHHhhcCccc----cccchHHHHHHHhccCChhHHHHHHHHHH
Q 000166 1297 LE--------GLRSKNNR--TRIECVDLV-GFLIDHHGAEIS----GQLKSLQIVASLTAERDGEIRKAALNTLA 1356 (1974)
Q Consensus 1297 ~~--------glksKN~r--~R~EcL~el-~~li~~~G~~v~----~~~Kal~~iA~~i~drD~~VR~AALn~l~ 1356 (1974)
++ |+=.-|++ .-.--+.|. +.|- .|-+.. .-.++|+.++++|-.+|+.|---|.=++.
T Consensus 196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlc--RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC--RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh--CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 43 22111111 000111221 1111 133221 11478999999999999999777766655
No 106
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.02 E-value=1.1e+02 Score=40.20 Aligned_cols=362 Identities=17% Similarity=0.160 Sum_probs=206.7
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHH-HcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000166 855 TPTLVKSLESPDWKVRLESIEAVNKILE-EANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEK 932 (1974)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~-~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1974)
....+..+.+.+=..+.++..+.-+++. +-|+.|..-.-.-+++-|-..| .+.|-.+.--|+-+++.||.+---.-.-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 3456677777787889999999999996 3345554433223444455555 5778888999999999998875433333
Q ss_pred hhh-hhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-cc-hhhhH-----HHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 933 SSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL-DKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 933 ~~k-~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl-~~~~~-----~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
++. ..+|-++..|......||+-|.-||--++... .+ +-++. .+...+.....-..+| -+.|....|-..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR--n~tW~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLR--NATWTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHH--HHHHHHHHHHcC
Confidence 332 46788999999999999999998887665432 22 22222 2222222221001233 366777777666
Q ss_pred CC-Ccc---hhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCC
Q 000166 1005 SG-FPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (1974)
Q Consensus 1005 ~~-~~~---~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~~~ 1080 (1974)
+. .|. ...++..+..+|.+.+++|..-|.-+|.++.-+--+ ...-- ++-.....+++.|....++...|+-
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne-~iq~v---i~~gvv~~LV~lL~~~~~~v~~PaL- 300 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE-KIQMV---IDAGVVPRLVDLLGHSSPKVVTPAL- 300 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-HHHHH---HHccchHHHHHHHcCCCcccccHHH-
Confidence 53 332 344555577789999999999888888776533211 11111 1123445566666554321110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhc---------ccCC-CChHHHHhhhhccc
Q 000166 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKD-SNKEDRERMVVRRF 1150 (1974)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~K~~R~~~~~~kw 1150 (1974)
..-++ +++ | .+.+++.++ .... +.|+ -+|+- --|
T Consensus 301 ---------------RaiGN-------Ivt-G-----------~d~QTq~vi~~~~L~~l~~ll~~s~~~-~ikkE-AcW 344 (514)
T KOG0166|consen 301 ---------------RAIGN-------IVT-G-----------SDEQTQVVINSGALPVLSNLLSSSPKE-SIKKE-ACW 344 (514)
T ss_pred ---------------hhccc-------eee-c-----------cHHHHHHHHhcChHHHHHHHhccCcch-hHHHH-HHH
Confidence 00000 000 0 011222111 0111 1111 01111 125
Q ss_pred cc---cCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHh--HHHHHHHHHHhccccch
Q 000166 1151 KF---EDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNT 1225 (1974)
Q Consensus 1151 ~f---~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i~~--lDlllkw~tlr~~dtN~ 1225 (1974)
.. +.-..+|++.. |...+=+.|+..|-+.||+-+-+|.=.+.-+..+-..+.|.- -+-+++-++-.+.-.++
T Consensus 345 ~iSNItAG~~~qiqaV---ida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~ 421 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAV---IDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDV 421 (514)
T ss_pred HHHHhhcCCHHHHHHH---HHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCCh
Confidence 43 33455666666 888999999999999999988888877776655444433320 11144555445555788
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcC
Q 000166 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (1974)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd 1267 (1974)
.++..+||-+..+|.+--... .+.. .-+..+|+..|-
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 889999999998776643332 1111 455677777764
No 107
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=82.36 E-value=29 Score=42.95 Aligned_cols=148 Identities=12% Similarity=0.138 Sum_probs=104.7
Q ss_pred cCChHHHHHHHHHHHHhhh--cCCCCC-CChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccc-cccchhhhHHH
Q 000166 296 ATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPV 370 (1974)
Q Consensus 296 s~KWkeRkEALe~L~~L~~--~pKi~~-~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~-F~~y~~~~l~~ 370 (1974)
.+.|-|=-..|..|.+.++ ++.+.- .+=..+.+.|..+++ ---.-|=..|+++.+.|=+.+|+. +.+....
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i---- 97 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPI---- 97 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHH----
Confidence 5678888888888887666 343332 233456677777776 555556666677666666666643 2222222
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHH
Q 000166 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1974)
Q Consensus 371 lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l 450 (1974)
....+...+.+-.-+||-..+..+.+.+-..++ .+.+.++.++..+
T Consensus 98 ---------------------------------~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~sl 143 (307)
T PF04118_consen 98 ---------------------------------YSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSL 143 (307)
T ss_pred ---------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHh
Confidence 334456666677778888888888887765555 5556778899999
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
+.+++|.+.|+-+.....|..+...+|.+.+
T Consensus 144 LpGLede~sE~~~~~~~ll~~l~~~v~~~~F 174 (307)
T PF04118_consen 144 LPGLEDEGSEFFDRTLKLLDKLKEAVGDKYF 174 (307)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhcChhHH
Confidence 9999999999999999999999999998833
No 108
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.33 E-value=32 Score=43.02 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=99.4
Q ss_pred ChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHH----h
Q 000166 322 DFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK----A 396 (1974)
Q Consensus 322 dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~----~ 396 (1974)
.-..++..|..++. ++|=.....++.++..=...++..+ -..++..+..-|+|||++||.+-..++-.++. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 45678899999998 9999999999988888887774333 36678888889999999999887777766653 1
Q ss_pred cCC-ChhhhHHHHHH----HhhcCCch---------------------------------------------------hH
Q 000166 397 GCL-NLVDVVEDVKT----SVKNKVPL---------------------------------------------------VR 420 (1974)
Q Consensus 397 ~~~-~l~~~~e~i~~----al~~KnP~---------------------------------------------------vk 420 (1974)
... -..++++.+.+ +..+..|. .-
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~ 175 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS 175 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC
Confidence 011 12233333333 33333332 12
Q ss_pred HHHHHHHHHHHhhCChh----HHhHhhhhhHHHHHhhhCCC--CHHHHHHHHHHHHHHHHHhChh
Q 000166 421 SLTLNWVTFCIETSSKA----AVLKVHKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVGMR 479 (1974)
Q Consensus 421 ~etl~~L~r~l~~~~~~----~~~~~~k~~~~~l~k~l~Ds--~~~VR~aA~~~l~~lmk~~Ge~ 479 (1974)
.+.+.|+.|+++..-.. ........+.-.++-++-.+ ..+||..|..++..++..-++.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 23344444444321100 00000234566677778788 8999999999999998877654
No 109
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.94 E-value=2.1e+02 Score=40.06 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=55.8
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhccc---cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 000166 331 KKLITDVNIAVAVEAIQAIGNLARGLRTH---FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 331 kk~l~DsNv~vv~~A~~~i~~LA~gLr~~---F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~ 396 (1974)
.+.|++.|..+...|+.|+..--.=|... |-|-+....|++++++++|.+.+++-+.+|+..+..+
T Consensus 809 ~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 809 IHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34567888888888888887766666532 7788999999999999999999999999999999987
No 110
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.03 E-value=1.5e+02 Score=41.37 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=64.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh-cCCChhhhHH
Q 000166 335 TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVE 406 (1974)
Q Consensus 335 ~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~-~~~~l~~~~e 406 (1974)
.-||+--+-..+..|+.+|..+|..|.++...++=++++++...-+.|...+..|+-+++.. ++-+++.++.
T Consensus 558 ~kSnv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~ 630 (1014)
T KOG4524|consen 558 KKSNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIR 630 (1014)
T ss_pred hccchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 37888888899999999999999999999999999999999999999999999999999987 2344666654
No 111
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.87 E-value=16 Score=44.76 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcChhhhhh--hhHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHhhch--hhhHHHHHHHHhhccCchhHH
Q 000166 72 ALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAVV 146 (1974)
Q Consensus 72 ~leal~~~l~~a~~~~~~~--~~~v~~~lveK~L~~-r~ktk~~a~e~~l~~vE~e~--~~~v~e~ll~~~~~K~PKvva 146 (1974)
.|..+...+++...+.... -.+++..+|-.++.+ .+..++.|.+|+=+|+=++. ....+..+...+..-.+-+..
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3444555666654222222 237788888888874 78999999999999887754 355666777777666899999
Q ss_pred HHHHHHHHHHHhhCCCccCh----------hHHHhhchhhhcCCChhHHHHHHHHHHHHH
Q 000166 147 PAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1974)
Q Consensus 147 aai~~l~~~l~~FG~kvv~~----------K~ilk~l~~lf~h~dk~VR~ea~~L~vely 196 (1974)
.|+.+|..++..||...++. ..+++.+-+.+.+.|+.||..+..-+.-|.
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999976642 358999999999999999988766655543
No 112
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=80.17 E-value=6.8 Score=42.95 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=72.4
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
+.+.+|.-=.|.-|.+. . ....=.+.+++|+++|. ..|.+|+..|+..++.+.+-=|..|... .+.++..
T Consensus 14 l~~~dw~~ileicD~In----~---~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e 86 (141)
T cd03565 14 LQSEDWGLNMEICDIIN----E---TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKD 86 (141)
T ss_pred CCCcCHHHHHHHHHHHh----C---CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhH
Confidence 55667876555555442 1 12224589999999998 6799999999999999999999999876 4577776
Q ss_pred -HHHHhccCC---HHHHHHHHHHHHHHHHh
Q 000166 371 -LLEKLKEKK---PTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 -lLeklKEKK---~~V~eA~~~aLda~~~~ 396 (1974)
|+..+..+. ..|++-+.+.+..|...
T Consensus 87 ~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 87 VLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 666666543 37888899999999864
No 113
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.01 E-value=71 Score=42.61 Aligned_cols=301 Identities=17% Similarity=0.177 Sum_probs=186.0
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hh---
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KA--- 437 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~--~~--- 437 (1974)
...+...+..-+.+.-..||.++.++|-++.+ ...|.. +.....+.|.+-+-.||.++...+.-+=..++ ..
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 44445558889999999999999999999987 255654 45777889999999999999776654433331 11
Q ss_pred HHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc--CCHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000166 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK--LDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (1974)
Q Consensus 438 ~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~--Ld~~kk~KI~e~~~~~~~~~~~~~~~~~ 515 (1974)
.-.++.......++..++|..-.||=-|+++||.+- .+.++.+.+.|++ +...+|++-
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~-~vSee~i~QTLdKKlms~lRRkr~------------------- 333 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE-QVSEEIIQQTLDKKLMSRLRRKRT------------------- 333 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH-HhHHHHHHHHHHHHHhhhhhhhhh-------------------
Confidence 112444556677889999999999999999999754 4555666655542 122222210
Q ss_pred ccCCCCCCCCCCCcchhhhhhhhhh---cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHH
Q 000166 516 VQTSGGSVPSVEASESSFVRKSAAS---MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 592 (1974)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~E 592 (1974)
+.+.+ +...+ -.+|++-.+ | .+.|
T Consensus 334 ---------ahkrp------k~l~s~GewSsGk~~~a---------------------------------d-----vpse 360 (823)
T KOG2259|consen 334 ---------AHKRP------KALYSSGEWSSGKEWNA---------------------------------D-----VPSE 360 (823)
T ss_pred ---------cccch------HHHHhcCCcccCccccc---------------------------------c-----Cchh
Confidence 00000 00000 000110000 0 0122
Q ss_pred HHHHHHhccCc----HhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHH
Q 000166 593 EIESRLGSLIP----ADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667 (1974)
Q Consensus 593 e~e~~~~~l~~----~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil 667 (1974)
|..+....+|+ +.++-+|.+--.-.|-+|++.+.....+ .+--....+.|+.+ |+|---.|-.+.+..+
T Consensus 361 e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM------fNDE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 361 EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM------FNDEIEVVRLKAIFAL 434 (823)
T ss_pred hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH------hccHHHHHHHHHHHHH
Confidence 33333334555 3456777777788899999999866544 22222234445444 5777888999999999
Q ss_pred HHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHH--HHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 000166 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTT--FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSA 745 (1974)
Q Consensus 668 ~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~--~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~a 745 (1974)
+.++.+ -.+-+.....++..+.|.. ++.|+...++|-. +........++.++++.+ -|=|+=+-|.+.+|..+
T Consensus 435 ~~Is~~-l~i~eeql~~il~~L~D~s--~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 435 TMISVH-LAIREEQLRQILESLEDRS--VDVREALRELLKNARVSDLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRI 509 (823)
T ss_pred HHHHHH-heecHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHH
Confidence 998876 4555555555666655554 3456677776644 455566667777777765 46677777777666554
Q ss_pred HHHhc
Q 000166 746 VEDFG 750 (1974)
Q Consensus 746 i~eFG 750 (1974)
=..+|
T Consensus 510 GqnH~ 514 (823)
T KOG2259|consen 510 GQNHR 514 (823)
T ss_pred hccCh
Confidence 44444
No 114
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=79.59 E-value=11 Score=46.95 Aligned_cols=111 Identities=16% Similarity=0.319 Sum_probs=84.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh--hhhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK--SSKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k--~~k~l~~ 939 (1974)
....||-.=.+.-|.|. + .|.+.-|-+++|.+||.-.+.+|+.+||++++.++.-+|+.|.+ .+|.|..
T Consensus 21 nT~enW~~IlDvCD~v~------~---~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVG------S---DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred cccccHHHHHHHHHhhc------C---CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 34567876555555442 1 23444699999999999999999999999999999999999986 4778888
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
.+...+.+ .-+.|++.....+..|.+.+.=|.-+.-|.+..+
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~ 134 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYK 134 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 88888875 4457999999999999987766665555554443
No 115
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=78.10 E-value=47 Score=38.12 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHhhhcCCCCC-hhhh-h------------hhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh
Q 000166 26 KVRNEANIDLAALCDSITDPKD-NRIR-E------------LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA 91 (1974)
Q Consensus 26 KaRl~ayeel~~~f~~~~d~~d-~~~~-~------------~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~ 91 (1974)
|.|++|..-|...++.. +.+. .-|| . -..++.-++.|.|.-+.-.++.++.+++++... +-..+
T Consensus 1 kvR~~Al~~L~al~k~~-~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~~A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKST-DKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP-FLAQA 78 (182)
T ss_pred ChhHHHHHHHHHHHHhc-CCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH-HHHHH
Confidence 78999999998888753 2221 0111 1 134555568999999999999999999988532 11111
Q ss_pred hHHHHHHHhh--hhcCChhhHHHHHHHHHHHHhhchhhhHHHHHHHHhh-ccCchhHHHHHHHHHHHHHhhCCCccC---
Q 000166 92 KEVCDAIAAK--CLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIP--- 165 (1974)
Q Consensus 92 ~~v~~~lveK--~L~~r~ktk~~a~e~~l~~vE~e~~~~v~e~ll~~~~-~K~PKvvaaai~~l~~~l~~FG~kvv~--- 165 (1974)
++-- .+ .|++ .+..+..+..| +=..|+-++. .+++-+...++.++..++...=..-++
T Consensus 79 e~~~----~~~~sFts------lS~tLa~~i~~------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~l 142 (182)
T PF13251_consen 79 EESK----GPSGSFTS------LSSTLASMIME------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGL 142 (182)
T ss_pred HhcC----CCCCCccc------HHHHHHHHHHH------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhH
Confidence 1000 01 1111 23333333333 2233444444 467888899999999888887776665
Q ss_pred hhHHHhhchhhhcCCChhHHHHHHHHHHHHH
Q 000166 166 PKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1974)
Q Consensus 166 ~K~ilk~l~~lf~h~dk~VR~ea~~L~vely 196 (1974)
+..++..+.+++.|.|.+||-.+...++.+-
T Consensus 143 l~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 143 LTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5678899999999999999999877766553
No 116
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=77.49 E-value=1.8e+02 Score=35.43 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=127.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHH---HHHHHHHHHHHHHHhccccccchh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAV---AVEAIQAIGNLARGLRTHFSGSSR 365 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~v---v~~A~~~i~~LA~gLr~~F~~y~~ 365 (1974)
-|.+++ ..|.-=..+|..+..|.+.+.+.++...++++.+-+-+. ..... -....+++..|...-+........
T Consensus 46 F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~-~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~ 122 (262)
T PF14500_consen 46 FFCSRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVD-VQSLPQSTRYAVYQLLDSLLENHREALQSMGD 122 (262)
T ss_pred HHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchh
Confidence 456666 478888888999999888777777777677776655332 22222 223344444444433322333444
Q ss_pred hhHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh---------cCC-c--hhHHHHHHHHHHHHh
Q 000166 366 FLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---------NKV-P--LVRSLTLNWVTFCIE 432 (1974)
Q Consensus 366 ~~l~~lLekl-KEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~---------~Kn-P--~vk~etl~~L~r~l~ 432 (1974)
.++..+++-. +||=|.-.--+-+-+..+... ..+.+..|++.+.+. -+| | --|.++-.=|.+||.
T Consensus 123 ~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~ 200 (262)
T PF14500_consen 123 DFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS 200 (262)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc
Confidence 5566655544 677775554444555555543 556778888877663 222 2 256677778888887
Q ss_pred hCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCH
Q 000166 433 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1974)
Q Consensus 433 ~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~ 490 (1974)
.++. +...++|.++.-|+.+.+.|+.-+..+|.......|.+.+.++...+=+
T Consensus 201 s~~~-----fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 201 STPL-----FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred CcHh-----hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 5532 2356789999999999999999999999999999999999999887643
No 117
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.43 E-value=2.9e+02 Score=37.86 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=82.5
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHh
Q 000166 1173 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (1974)
Q Consensus 1173 ~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~ 1252 (1974)
=+++.-|-+.|+--+=++++...+...+..-+-| +-++..++.+||..-.-+.-.|=+.|+..+-...-.+.|+
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvedi------v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDI------VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHH------HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH
Confidence 3666677788887778888877766654332222 2345557778866656666667777777777777788876
Q ss_pred HHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccch--HHHHHhhh
Q 000166 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKT--LPYILEGL 1300 (1974)
Q Consensus 1253 EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skv--f~~l~~gl 1300 (1974)
|+..+|+|++-+||.++..-..|-.-++..-..||.-|. ..-+++++
T Consensus 394 -aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~ 442 (948)
T KOG1058|consen 394 -AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETF 442 (948)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhh
Confidence 566789999999998888877777777777667765443 33344444
No 118
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=76.95 E-value=13 Score=41.18 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=57.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcC----CCCCCChhHHHHHHHHHhc-chh-------H--HHHHHHHHHHHHHHH
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTK----RIAPGDFTEVCRTLKKLIT-DVN-------I--AVAVEAIQAIGNLAR 354 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~p----Ki~~~dy~dL~~~Lkk~l~-DsN-------v--~vv~~A~~~i~~LA~ 354 (1974)
+....|.|.|=+||.+||++|..+++.+ .+..-.|..++.+|-+.+. ..- . .-+..+.+-++..|.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 4677899999999999999999988755 3445689999999988774 221 1 233344556666665
Q ss_pred HhccccccchhhhHHHHHHHhccCC
Q 000166 355 GLRTHFSGSSRFLLPVLLEKLKEKK 379 (1974)
Q Consensus 355 gLr~~F~~y~~~~l~~lLeklKEKK 379 (1974)
.|| .++-.-..++|-|+
T Consensus 88 ~lR--------~~ve~~~~~~k~kt 104 (155)
T PF11640_consen 88 ALR--------LFVEKSNSRLKRKT 104 (155)
T ss_pred HHH--------HHHHHHHhhcccch
Confidence 554 44445555666555
No 119
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=75.80 E-value=8.2 Score=41.32 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=61.6
Q ss_pred CCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH---h--------ccCCHHHHHHHH
Q 000166 319 APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK---L--------KEKKPTVAESLT 387 (1974)
Q Consensus 319 ~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLek---l--------KEKK~~V~eA~~ 387 (1974)
.+++..+++..|-++|.|.+..|-..+++||..|+..=+..|....+--...|-+. - .+--..||+++.
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~ 111 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQ 111 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHH
Confidence 34568899999999999999888899999999999998888988766554433221 1 234568999999
Q ss_pred HHHHHHHHh
Q 000166 388 QTLQAMHKA 396 (1974)
Q Consensus 388 ~aLda~~~~ 396 (1974)
+++.++|.+
T Consensus 112 El~~~if~~ 120 (122)
T cd03572 112 ELIKAIFSY 120 (122)
T ss_pred HHHHHHhcc
Confidence 999999875
No 120
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=75.38 E-value=34 Score=39.22 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=79.2
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHh-cCCC----hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hhH
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAA 438 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~-~~~~----l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~--~~~ 438 (1974)
.++|-++|-+.|++-.-+=-+.+++.-+... +.-. +.+++-.|..||.+++|.|...++.-|...+...+ -..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4566667777777666554444444444443 1111 44566778899999999999999999988765433 233
Q ss_pred HhHhhhhhHHHHH--hhhC---------CCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 439 VLKVHKDYVPICM--ECLN---------DGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 439 ~~~~~k~~~~~l~--k~l~---------Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
+.+..+.++|.+- +.-+ .....++|--.++|..|=+.=|++++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 4566677777766 2222 45688999999999999999998765
No 121
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.91 E-value=83 Score=42.18 Aligned_cols=185 Identities=20% Similarity=0.244 Sum_probs=119.7
Q ss_pred cCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCC
Q 000166 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (1974)
Q Consensus 767 ~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lp 846 (1974)
||+..|-.||..|..|+...|=..||++.. .+.=+.||..|.-
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~------e~mD~i~~kQf~~------------------------------- 224 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHA------EEMDSIIQKQFEE------------------------------- 224 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccH------HHHHHHHHHHHHH-------------------------------
Confidence 599999999999999999999888887632 1222334444443
Q ss_pred ccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHh
Q 000166 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASA 925 (1974)
Q Consensus 847 RvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~a 925 (1974)
+++-++|+==-+|.+|.+-|-+++.+==--|-|+.+.||+.-.-.-| .|+-.-|-..+.+++..++-
T Consensus 225 -----------l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~- 292 (1005)
T KOG1949|consen 225 -----------LYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD- 292 (1005)
T ss_pred -----------HHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-
Confidence 33334555556899999999999975334577777667666665555 67777777777777776652
Q ss_pred cChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh--ccchhhhH--HHHHHHhcccCCcchHHHHHHHHHHHh
Q 000166 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1974)
Q Consensus 926 mG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~--~gl~~~~~--~i~~~L~~~~~~p~~R~e~l~wL~~~l 1001 (1974)
.|-+-.....++|++=-.|-|+-..||=|+...|-.+-+. ..+-.+++ .+..-|...+ .|.-|.-+.--+.-+|
T Consensus 293 -np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~-~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 293 -NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS-RPVSRRLVSLIFNSFL 370 (1005)
T ss_pred -CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc-cHHHHHHHHHHHHhhc
Confidence 2333344566777776778899999999999888765433 23333333 4555555443 2334444444444444
Q ss_pred c
Q 000166 1002 T 1002 (1974)
Q Consensus 1002 ~ 1002 (1974)
+
T Consensus 371 P 371 (1005)
T KOG1949|consen 371 P 371 (1005)
T ss_pred C
Confidence 3
No 122
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.97 E-value=69 Score=40.05 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=121.8
Q ss_pred CCCChHHHHHHHHHHHHHHH---HcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-hhhhh
Q 000166 863 ESPDWKVRLESIEAVNKILE---EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVL 938 (1974)
Q Consensus 863 ~d~~WK~RkEaLe~v~~il~---~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~k~l~ 938 (1974)
.+.+=.+|-.|||.++.+++ .||..++-++ +...|. -+++++..|-..|+.+||..+.-=-+.-+.. -...+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~gg---l~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGG---LVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccC---HHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 44556778899999999986 3777777654 666666 7899999999999999988776533322222 22366
Q ss_pred HHHHHHhc-cCchhHHHHHHHHHHHHHHhc--cchhhhH-----HHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcc-
Q 000166 939 SDILKCLG-DNKKHMRECTLTVLDAWLAAV--HLDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD- 1009 (1974)
Q Consensus 939 ~~il~~l~-D~K~~vR~aa~~alda~~~~~--gl~~~~~-----~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~- 1009 (1974)
..++..|. |.--.+|..|+-|+.+....- |.+.|+. .+.++|.+++.+..++.-++..+..-+.......+
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 67777666 444478899999998887653 6677765 68888987666777888888888777766654322
Q ss_pred hhhhhhh--HhhhccCCChHHHHHHHHHHHHHHHhcCHHH
Q 000166 1010 AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1974)
Q Consensus 1010 ~~~~~~p--~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~ 1047 (1974)
.....-+ +.....-=..+++.++-..+...+...-...
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 2222222 2222222345788888777777766654443
No 123
>PF05536 Neurochondrin: Neurochondrin
Probab=73.83 E-value=42 Score=44.81 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=120.0
Q ss_pred HHHHHHHhhhcCCCCC-CChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc-hhhhHHHHHHHhccCCHH
Q 000166 305 AVAELTKLASTKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPT 381 (1974)
Q Consensus 305 ALe~L~~L~~~pKi~~-~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y-~~~~l~~lLeklKEKK~~ 381 (1974)
|+.-|...+..|.+.. .++-+-+..|-+++. .+...++..+++|+..|+ +-.++.... ....++.|.+-+.. ++.
T Consensus 77 avsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 77 AVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred HHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 3444555666777765 568888889999987 555799999999999999 555554333 45678888888777 777
Q ss_pred HHHHHHHHHHHHHHhcC--------CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh-----HHhHhhhhhHH
Q 000166 382 VAESLTQTLQAMHKAGC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----AVLKVHKDYVP 448 (1974)
Q Consensus 382 V~eA~~~aLda~~~~~~--------~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~-----~~~~~~k~~~~ 448 (1974)
..|-+...|-.++.... ..+..++..+..-+..-.-..|-+.+.+|...|...+.- ....-.+.+..
T Consensus 155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 77777777766655311 112344555655555555667889999999999876311 11122344444
Q ss_pred HHHhhh-CCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 449 ICMECL-NDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 449 ~l~k~l-~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
.+...| +-..+.-|+.+..+.+.++.++|.+.+
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence 444444 667789999999999999999998754
No 124
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=72.90 E-value=17 Score=51.05 Aligned_cols=172 Identities=15% Similarity=0.073 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCccchH---HHHhhhc-cchhHh-HHHHHHHHHHHHHHhcChhHHhhhhhhhHHHH
Q 000166 868 KVRLESIEAVNKILEEANKRIQPAGTGELF---GGLRGRL-YDSNKN-LVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1974)
Q Consensus 868 K~RkEaLe~v~~il~~ankrI~p~~~geL~---~aLk~Rl-~DsNk~-lv~~al~ii~~lA~amG~~~~k~~k~l~~~il 942 (1974)
-+|.-|.-.++-+.. .+.+.+...++ ..|-.-| .+.+.+ .-...+.....++.-||..+.+ .-..+|.++
T Consensus 748 ~errgael~L~~l~~----~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~ 822 (1549)
T KOG0392|consen 748 FERRGAELFLKILSK----MFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLF 822 (1549)
T ss_pred HHhhhHHHHHHHHHH----HhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHH
Confidence 457777777765553 33333322222 1222223 222333 5556677778888899988888 778899999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHhccchhh---hHHHHHHHh-cccCCcchHHHHHHHHHHHhccCCC--Ccchhh-hhh
Q 000166 943 KCLGDNKKHMRECTLTVLDAWLAAVHLDKM---VPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAH-LLK 1015 (1974)
Q Consensus 943 ~~l~D~K~~vR~aa~~alda~~~~~gl~~~---~~~i~~~L~-~~~~~p~~R~e~l~wL~~~l~~~~~--~~~~~~-~~~ 1015 (1974)
.++.-.-..||.++..|+..++.....+.+ ++.+...|. ..++ .|++...-+..+|...-. ...... +++
T Consensus 823 ~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~---~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~ 899 (1549)
T KOG0392|consen 823 FFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKF---VRRQGADELIELLDAVLMVGLVPYNPLLVV 899 (1549)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhH---hhhhhHHHHHHHHHHhhcccccccceeehh
Confidence 999999999999999999999887654433 333333333 1122 233333333333333221 223333 567
Q ss_pred hHhhhccCCChHHHHHHHHHHHHHHHhcCHHH
Q 000166 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1974)
Q Consensus 1016 p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~ 1047 (1974)
|++-|+.|-...||.+|..+...++..++.+.
T Consensus 900 pllr~msd~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 900 PLLRRMSDQIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred hhhcccccchHHHHHHHHHHHHHHhccccccc
Confidence 79999999999999999999999999998775
No 125
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.38 E-value=63 Score=43.39 Aligned_cols=130 Identities=17% Similarity=0.230 Sum_probs=91.8
Q ss_pred cchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhh--ccCccchHHHHHh--
Q 000166 1223 SNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN--FYSATKTLPYILE-- 1298 (1974)
Q Consensus 1223 tN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~--vyp~skvf~~l~~-- 1298 (1974)
.|.+.--++|+|+..+|+-|- +|.+.+-=..-|+-||+--.--+--+||-++-.|+..+.. .--..-||.-|.+
T Consensus 54 Kresi~dRIl~fla~fv~sl~--q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l 131 (892)
T KOG2025|consen 54 KRESIPDRILSFLARFVESLP--QLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKL 131 (892)
T ss_pred cCCCcHHHHHHHHHHHHHhhh--ccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 455666788999999999887 7778887666666666544433555799999999999887 4455566776665
Q ss_pred --hhccCChhhHhHHHHHHHHHHHhhcCccccccchHHHHHHHh-ccCChhHHHHHHHHHHH
Q 000166 1299 --GLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLT-AERDGEIRKAALNTLAT 1357 (1974)
Q Consensus 1299 --glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i-~drD~~VR~AALn~l~~ 1357 (1974)
-++-|-+-+|.|.+-.|.++-+.-|= .........+..| .|..+.||.|||.++..
T Consensus 132 ~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 132 LIRLKDREPNVRIQAVLALSRLQGDPKD---EECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHHhccCchHHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 45778888999998888887532221 1112334445555 48999999999998863
No 126
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=71.95 E-value=82 Score=43.33 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=112.9
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc-hhhhHHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLL 372 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y-~~~~l~~lL 372 (1974)
++++.=++|.+|+..+...... ..|...|+..+-|-+.--|+-+=-+--==+...|++ .|. ....++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~----G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~-----~P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSL----GEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-----KPELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHH
Confidence 7888889999999997653321 124566655444444333333333333333334432 333 778899999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh-hHHHHH
Q 000166 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (1974)
Q Consensus 373 eklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~-~~~~l~ 451 (1974)
.-|.|..+-+|-.+..+|-.+-.. -=++.+++.|...++|++|.||..+..-+..+++-.+.-. +.. .+-++.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~----~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY----HELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh----hcccHHHHHH
Confidence 999999999999887777655332 1144566788889999999999999999999986432211 122 455666
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHH
Q 000166 452 ECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 452 k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
.++.|++|.|--+|..+|..+-.
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 77889999999999888877754
No 127
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=71.85 E-value=18 Score=38.85 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=52.7
Q ss_pred CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh--hhhHHHHHhhh--------CCCCHHHHHHHHHH
Q 000166 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPICMECL--------NDGTPEVRDAAFSV 468 (1974)
Q Consensus 399 ~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~--k~~~~~l~k~l--------~Ds~~~VR~aA~~~ 468 (1974)
.++.+++|.+..-|++|.|.||.-+|..|..++...+.....-+. ..++..+...- +|....||++|.++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 346678888889999999999999999999988776533322111 12333333221 56778999999999
Q ss_pred HHHHH
Q 000166 469 LAAIA 473 (1974)
Q Consensus 469 l~~lm 473 (1974)
+..|.
T Consensus 114 ~~~if 118 (122)
T cd03572 114 IKAIF 118 (122)
T ss_pred HHHHh
Confidence 98874
No 128
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=71.28 E-value=8.3 Score=52.36 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=90.0
Q ss_pred hhhhhccCChHHHHHHHHHHHHh-hhcCCCCCCChhHHHHHHHHHhc--chh-HHHHHHHHHHHHHHHHHhc-cccccch
Q 000166 290 FWEGVKATKWSERKDAVAELTKL-ASTKRIAPGDFTEVCRTLKKLIT--DVN-IAVAVEAIQAIGNLARGLR-THFSGSS 364 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L-~~~pKi~~~dy~dL~~~Lkk~l~--DsN-v~vv~~A~~~i~~LA~gLr-~~F~~y~ 364 (1974)
+.+.+.=..--.|.+.|+-+..+ ...+-+.+.+.+-++..|-.+=. |.| ..|-..|++|++.|.+-+. +...+|.
T Consensus 914 LLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr 993 (1030)
T KOG1967|consen 914 LLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR 993 (1030)
T ss_pred HHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc
Confidence 45667778888899999999875 46788888888888888877765 555 5666789999999999887 5588999
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 000166 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 365 ~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~ 396 (1974)
..++.++...+.|||--||.-+..|=..|+.-
T Consensus 994 ~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 994 PLVLRALIKILDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999999999889764
No 129
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=71.17 E-value=40 Score=42.14 Aligned_cols=85 Identities=24% Similarity=0.223 Sum_probs=60.8
Q ss_pred cchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH----h--
Q 000166 894 GELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA----A-- 966 (1974)
Q Consensus 894 geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~----~-- 966 (1974)
..+...|-.-+ +|+|-......+..++.-...++.. ..+.++..+.+.|+|+|+++|.+-+.++-..+. .
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~---~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE---LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC---CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 56777777777 7899988888877777777666322 245667788889999999999999999888764 1
Q ss_pred -ccchhhhHHHHHHHh
Q 000166 967 -VHLDKMVPYVTTALT 981 (1974)
Q Consensus 967 -~gl~~~~~~i~~~L~ 981 (1974)
.-...+++.+.+.++
T Consensus 98 ~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 123555565555554
No 130
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=70.00 E-value=13 Score=49.52 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=108.8
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCCh--hHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhccccccch
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy--~dL~~~Lkk~l~--DsNv~vv~~A~~~i~~LA~gLr~~F~~y~ 364 (1974)
.|.+.+..+.=-||.+--..|...+ +..+.|| .-+...|-..+. |+-..+++..++|...+..+ .|-
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~------eyq 328 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEE------EYQ 328 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhcccc------ccc
Confidence 3555555555455554444433311 1112221 223334444443 76777777777776666654 488
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHh
Q 000166 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1974)
Q Consensus 365 ~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~----l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~ 440 (1974)
..++|.|+.-|+=.=..||=-+..=++....+ ++ .+.+...+..++...||.+|.+|+..+.-.....++..++
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 88999999999999999999999999988886 55 3346677888999999999999999998777665544443
Q ss_pred HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 441 ~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
-.++..+.+.-.|.++.+|....-|+|.+--+
T Consensus 407 ---~Ellr~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 407 ---GELLRYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred ---HHHHHHHHhhCccccCcccccceeeecccccc
Confidence 22344444444455555555555555544433
No 131
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=69.58 E-value=58 Score=40.04 Aligned_cols=127 Identities=17% Similarity=0.120 Sum_probs=87.8
Q ss_pred HHHHHHHHhccccccchh--hhHHHHH-HHhccCCHHHHHHHHHHHHHHHHhcCCCh-hhhHHHHHHHhhcCCchhHHHH
Q 000166 348 AIGNLARGLRTHFSGSSR--FLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNL-VDVVEDVKTSVKNKVPLVRSLT 423 (1974)
Q Consensus 348 ~i~~LA~gLr~~F~~y~~--~~l~~lL-eklKEKK~~V~eA~~~aLda~~~~~~~~l-~~~~e~i~~al~~KnP~vk~et 423 (1974)
+++.+-+-....+.++.. .++..++ --++-.-+.||+.+.+||=..+-. ...+ .+.+.-+...++...+.||..+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444444445555433 6666655 556667789999999998876553 1111 1233445566666689999999
Q ss_pred HHHHHHHHhhCChhHHhHh--------hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 424 LNWVTFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~--------~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
++-+...+-.++...+... ...+...+.+.+++.++++|..|+++++.|+-.
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999987654433222 246888999999999999999999999998743
No 132
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.42 E-value=12 Score=49.76 Aligned_cols=91 Identities=25% Similarity=0.292 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCC
Q 000166 380 PTVAESLTQTLQAMHKAGCLNLV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (1974)
Q Consensus 380 ~~V~eA~~~aLda~~~~~~~~l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~ 458 (1974)
+++.+ +.=||+-+....+-.|. |+..||.+-|.|-.|-+|.-+...|.|.|.+.|.+ ++.+.|-+..-|+|++
T Consensus 121 ~n~ye-~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 121 SNVYE-VGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPD 194 (877)
T ss_pred Cccch-hhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCC
Confidence 44444 33455555433112233 78899999999999999999999999999877543 3788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000166 459 PEVRDAAFSVLAAIAKSV 476 (1974)
Q Consensus 459 ~~VR~aA~~~l~~lmk~~ 476 (1974)
|.|-.||...+..|.+.-
T Consensus 195 p~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKN 212 (877)
T ss_pred chHHHHHHHHHHHHHhhC
Confidence 999999999999888763
No 133
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.19 E-value=4.6e+02 Score=35.80 Aligned_cols=345 Identities=16% Similarity=0.182 Sum_probs=182.3
Q ss_pred hhhccCChHHHHHHHHHHHHhhhcCCCCCCC-hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHH-HhccccccchhhhHH
Q 000166 292 EGVKATKWSERKDAVAELTKLASTKRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLLP 369 (1974)
Q Consensus 292 ~~l~s~KWkeRkEALe~L~~L~~~pKi~~~d-y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~-gLr~~F~~y~~~~l~ 369 (1974)
+-+++.|+.|+.=+-=-+.-|.... .| ...++..+++=|.-.|-.-|.+|++||+.+.. -|+..|..-+.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n----~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~---- 152 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNEN----SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP---- 152 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcc----hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH----
Confidence 3467788888765444443344322 22 23445677777878888899999999999863 35555654433
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhc--CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhH
Q 000166 370 VLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1974)
Q Consensus 370 ~lLeklKEKK~~V~eA~~~aLda~~~~~--~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1974)
- |=.-++.-..|+..+.=||-.++... -+..+++.+.|..-|+..--.|-..+..++.-.....+ ... +.++
T Consensus 153 K-lLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p-~~y----k~~~ 226 (938)
T KOG1077|consen 153 K-LLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP-ESY----KTCL 226 (938)
T ss_pred H-HHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC-HHH----hhhH
Confidence 2 22457788889998888999999861 13344666777777766655555555555553333322 222 3333
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh-cC-CHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCC
Q 000166 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE-KL-DDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~-~L-d~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1974)
|..++-| ..+....|.. +..|+= .+ .|=---|+...+.-. |
T Consensus 227 ~~avs~L---------------~riv~~~~t~-~qdYTyy~vP~PWL~vKl~rlLq~~--------p------------- 269 (938)
T KOG1077|consen 227 PLAVSRL---------------SRIVVVVGTS-LQDYTYYFVPAPWLQVKLLRLLQIY--------P------------- 269 (938)
T ss_pred HHHHHHH---------------HHHHhhcccc-hhhceeecCCChHHHHHHHHHHHhC--------C-------------
Confidence 3333221 1122223321 111110 00 000001111111100 0
Q ss_pred CCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHh
Q 000166 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPAD 605 (1974)
Q Consensus 526 ~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~ 605 (1974)
+++.++++. ..-|+-+++.....+-
T Consensus 270 --~~~D~~~r~-----------------------------------------------------~l~evl~~iLnk~~~~ 294 (938)
T KOG1077|consen 270 --TPEDPSTRA-----------------------------------------------------RLNEVLERILNKAQEP 294 (938)
T ss_pred --CCCCchHHH-----------------------------------------------------HHHHHHHHHHhccccC
Confidence 000000000 0001111100000000
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcC---CCccchHHHHHHHHHHHHHHHHhcCCCCccc-
Q 000166 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP---GWSEKNVQVQQQVIEVINYLAATATKFPKKC- 681 (1974)
Q Consensus 606 i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~P---gwkesNfqV~~k~leil~~la~~~~~fs~~~- 681 (1974)
-.+++-.++.+-=--|.+.+.-.-..|.+.+++.|.....- .-+|+|..-+ .||-++.++. +.|+-..
T Consensus 295 ----~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYL--aLEsm~~L~s--s~~s~dav 366 (938)
T KOG1077|consen 295 ----PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYL--ALESMCKLAS--SEFSIDAV 366 (938)
T ss_pred ----ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhh--hHHHHHHHHh--ccchHHHH
Confidence 02223333333223334444443344445555555443221 2378887654 5777777776 3665333
Q ss_pred ---hhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccC
Q 000166 682 ---VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (1974)
Q Consensus 682 ---~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~ 752 (1974)
-..++..+- ---|+-+|..|-++|-++|......-++++++.++ .+-.+-+++|-..-++=+-+.|..+
T Consensus 367 K~h~d~Ii~sLk-terDvSirrravDLLY~mcD~~Nak~IV~elLqYL-~tAd~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 367 KKHQDTIINSLK-TERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL-ETADYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred HHHHHHHHHHhc-cccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHhcCC
Confidence 334444432 02377789999999999999999999999999996 6788888988877776666777654
No 134
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=67.16 E-value=36 Score=34.73 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=64.9
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000166 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (1974)
Q Consensus 405 ~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~ 484 (1974)
++.+...+.+..|.+|...+.-|.+.+.+.. ... .....++..+...|.|.++-|==+|..+|+++......+.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~-~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPV-IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cch-hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 4455566678889999999999999998765 111 12366788999999999999999999999999999988777666
Q ss_pred hhc
Q 000166 485 IEK 487 (1974)
Q Consensus 485 l~~ 487 (1974)
++.
T Consensus 83 ~~~ 85 (92)
T PF10363_consen 83 LDE 85 (92)
T ss_pred HHH
Confidence 543
No 135
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.03 E-value=27 Score=50.28 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=101.0
Q ss_pred HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCC
Q 000166 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1974)
Q Consensus 757 K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1974)
-.+|.++..- |.+.|-.+|-.|++|+|.|..--+.-+- + ..
T Consensus 258 ~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------~~-------------------- 298 (1266)
T KOG1525|consen 258 LAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------TY-------------------- 298 (1266)
T ss_pred HHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c--------------cc--------------------
Confidence 4677788776 9999999999999999998742111100 0 00
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000166 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1974)
Q Consensus 837 ~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al 916 (1974)
| -+=..|+.++.|..--+|-|.++..-.++- +|+-|.-+ -.+.-+|+-|..|-+.++-++++
T Consensus 299 ---------~------~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~-~~~~~~~~--~~~~~~l~~~~~D~~~rir~~v~ 360 (1266)
T KOG1525|consen 299 ---------D------DLWSAFLGRFNDISVEVRMECVESIKQCLL-NNPSIAKA--STILLALRERDLDEDVRVRTQVV 360 (1266)
T ss_pred ---------h------HHHHHHHHHhccCChhhhhhHHHHhHHHHh-cCchhhhH--HHHHHHHHhhcCChhhhheeeEE
Confidence 0 023468888999999999999999999985 34333332 23556777778888887765543
Q ss_pred HHHHHHHHhcChhHH-hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh
Q 000166 917 ITLGAVASAMGPAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1974)
Q Consensus 917 ~ii~~lA~amG~~~~-k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~ 966 (1974)
-.+..++ .|. .+...++--+.+++.|+|..||.-|+..|+.++..
T Consensus 361 i~~~~v~-----~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 361 IVACDVM-----KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred EEEeehh-----HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2111111 111 23333666778899999999999999999999884
No 136
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.06 E-value=1.6e+02 Score=40.28 Aligned_cols=211 Identities=13% Similarity=0.106 Sum_probs=129.1
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHh---cChhHHh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA---MGPAVEK 932 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~a---mG~~~~k 932 (1974)
++.-+-+...+=-+||-|+-....++. .-|+...-+..+-+++|.|.+--|...++.+|..+.+- +=..|++
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~ir-----K~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~ 219 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIR-----KVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD 219 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHH-----cCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH
Confidence 334444666777788888888777773 44665444556778888888888888888777777654 1122222
Q ss_pred hhh-----------------------------hhhHHHHHHhccCchhHHHHHHHHHHHHHHhc------cchhhhHHHH
Q 000166 933 SSK-----------------------------GVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------HLDKMVPYVT 977 (1974)
Q Consensus 933 ~~k-----------------------------~l~~~il~~l~D~K~~vR~aa~~alda~~~~~------gl~~~~~~i~ 977 (1974)
.+. +-+=.+|..||-+-+..-++.-.-|...+..| |-.-++|.+.
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~ 299 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVR 299 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 111 11113344566666666666666666666543 4455556555
Q ss_pred HHHhcccCCcchHHHHHHHHHHHhccCCCC--------------cchhhhhh---hHhhhccCCChHHHHHHHHHHHHHH
Q 000166 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF--------------PDAAHLLK---PASIAMTDKSSDVRKAAEACIVEIL 1040 (1974)
Q Consensus 978 ~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~--------------~~~~~~~~---p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1974)
.-+.- ..|+.+|--...-|.+.|.+-... .+....-. .|+.||+|.++-+|+.|-+++-.++
T Consensus 300 TI~~I-~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 300 TIMDI-RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHHhc-cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 55541 114667888888888877654331 11111111 2888999999999999999998887
Q ss_pred HhcCHHHHHHH----hhccCchhH----HHHHHHHHhccC
Q 000166 1041 RAGGQETIEKN----LKDIQGPAL----ALILERIKLNGA 1072 (1974)
Q Consensus 1041 ~~~G~~~~~~~----~~~Lk~~~~----~~i~~~l~k~~~ 1072 (1974)
..---..|.+. +...++..| ..|.+..|++.|
T Consensus 379 n~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 379 NESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 66665555444 344444444 456677777653
No 137
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.68 E-value=1.1e+02 Score=40.34 Aligned_cols=197 Identities=18% Similarity=0.128 Sum_probs=129.9
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhhcCC-CCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000166 290 FWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~~pK-i~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l 368 (1974)
....++|+.-+.|+-.|+-|.-+..+-| |...-|.-|...|.+++-|--..|-..|..|+..+- +|-.+=......++
T Consensus 96 ~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q-e~~~neen~~~n~l 174 (885)
T COG5218 96 LLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ-EMELNEENRIVNLL 174 (885)
T ss_pred HHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccCChHHHHHHHH
Confidence 3456799999999999998887776554 334458889999999999999999999999999886 45433333444444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHH
Q 000166 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1974)
Q Consensus 369 ~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1974)
-.++. -|--..||.++ |-.+... ..+..-++|.--+. +...| --+-.|||.....-....+-|.+.
T Consensus 175 ~~~vq--nDPS~EVRr~a---llni~vd-nsT~p~IlERarDv----~~anR---r~vY~r~Lp~iGd~~~lsi~kri~- 240 (885)
T COG5218 175 KDIVQ--NDPSDEVRRLA---LLNISVD-NSTYPCILERARDV----SGANR---RMVYERCLPRIGDLKSLSIDKRIL- 240 (885)
T ss_pred HHHHh--cCcHHHHHHHH---HHHeeeC-CCcchhHHHHhhhh----hHHHH---HHHHHHHhhhhcchhhccccceeh-
Confidence 44443 24444566543 2222222 23455555543221 11112 136678887664433322323333
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000166 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1974)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1974)
.+-.+|+|+.-+||.|+..+++.-...--+-.+..+++.||-.+++-....++
T Consensus 241 l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 241 LMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 56689999999999999999999888877777888999999766664333333
No 138
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=62.11 E-value=40 Score=37.50 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=59.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcc--cCCCCCCccchHHHHhhhc-cc-------hhH--hHHHHHHHHHHHHHH
Q 000166 857 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL-YD-------SNK--NLVMATLITLGAVAS 924 (1974)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~an--krI~p~~~geL~~aLk~Rl-~D-------sNk--~lv~~al~ii~~lA~ 924 (1974)
+++..+++.+=|+|+.|||.+..|+.... ..+....+..++.+|-.-+ .+ .+. .-+..+.+-++..|.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 46778999999999999999999997432 5566666788998886554 21 111 122223444555554
Q ss_pred hcCh-------hHH-hhhhhhhHHHHHHhccCc
Q 000166 925 AMGP-------AVE-KSSKGVLSDILKCLGDNK 949 (1974)
Q Consensus 925 amG~-------~~~-k~~k~l~~~il~~l~D~K 949 (1974)
+++- .|. +.++.++..|.+.|.+.-
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 4442 222 345667777777777766
No 139
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=62.08 E-value=39 Score=42.65 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHhc---CCCCccchhhhc----cchhhccccc--h---hhhHHHHHHHHHHHhhchHhHHHHHHHh
Q 000166 658 QVQQQVIEVINYLAATA---TKFPKKCVVLCL----LGISERVADI--K---TRAHAMKCLTTFSEAVGPGFIFERLYKI 725 (1974)
Q Consensus 658 qV~~k~leil~~la~~~---~~fs~~~~~~~l----~~lveKlgD~--K---~r~~a~e~L~~~aE~~~p~~V~~~l~~~ 725 (1974)
.+.++.|+.+..+.... ..|++-.-+.|+ +.+.-.-||. . +-....+.|-.+-|+-..+.|-+.+...
T Consensus 454 ekfqasfelikciiahlikehkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqf 533 (666)
T KOG4825|consen 454 EKFQASFELIKCIIAHLIKEHKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQF 533 (666)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhh
Confidence 45555566555544322 345554333333 3333444563 2 3345567788888999999999999999
Q ss_pred hhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhc---CCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcch
Q 000166 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTG---LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (1974)
Q Consensus 726 ~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~---L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlk 802 (1974)
+..+|.|-+--.--.-|...+.+.|-..-- -+++.+++-| +.+.=-.+|.+|....+.||+- +.++...+|+.
T Consensus 534 ldanklphiAkSqggkLarllkdlgkGrag--fiediakkfgVpaeehglndkreaafaiicdmtrd--hQarsIgedLm 609 (666)
T KOG4825|consen 534 LDANKLPHIAKSQGGKLARLLKDLGKGRAG--FIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTRD--HQARSIGEDLM 609 (666)
T ss_pred cccCcchHHHHHHhHHHHHHHHhcCCCccc--hhHHHHHHhCCCccccchhHHHHhHhhhhhhhccc--HHHHHHHhhcC
Confidence 888999988766666677777777753211 1222222211 3444446999999999999973 33333333333
Q ss_pred H--------HHHHHHHHHHhcCCCCCCCC
Q 000166 803 P--------ALLSALDAEYEKNPFEGTVV 823 (1974)
Q Consensus 803 p--------all~~Ie~EF~K~~~~~~p~ 823 (1974)
| -+...+-+.|+|..|...++
T Consensus 610 pddskngriilvksefEgFAkiDgranda 638 (666)
T KOG4825|consen 610 PDDSKNGRIILVKSEFEGFAKIDGRANDA 638 (666)
T ss_pred cccccCCceEEeHHHhhhhhhccCCCChH
Confidence 3 35567777888886654444
No 140
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=61.87 E-value=22 Score=40.79 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=67.4
Q ss_pred cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHH
Q 000166 1290 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369 (1974)
Q Consensus 1290 skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~ 1369 (1974)
.+.++.+++-.-+.|...|.-+++.++.+ -+.|+. .|..++|.+-.+.+|.|+.+|+-|...+...
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~i-l~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l----------- 72 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELI-LRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKEL----------- 72 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHH-----------
Confidence 46778889988999999999999999885 568984 6667789999999999999999999988844
Q ss_pred hccCCHHHHhhHHHHHHHh
Q 000166 1370 VGKLTDAQKSMLDDRFKWK 1388 (1974)
Q Consensus 1370 vg~ls~k~~smLeer~kr~ 1388 (1974)
-+|--+|++-|+-..
T Consensus 73 ----~eK~~s~v~~~~~~g 87 (187)
T PF12830_consen 73 ----HEKHESLVESRYSEG 87 (187)
T ss_pred ----HHHhHHHHHHHHHHH
Confidence 466677787777654
No 141
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.31 E-value=6.1e+02 Score=35.16 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=23.8
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 445 DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
.+.-.+..|++|++-+|||.|.-+|-.+-
T Consensus 503 sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 503 SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 34456778999999999999998887766
No 142
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=60.60 E-value=2.2e+02 Score=43.26 Aligned_cols=181 Identities=12% Similarity=0.165 Sum_probs=121.1
Q ss_pred ChHHHHHHHHHHHHhhh-cCCCCC-CCh---hHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHH
Q 000166 298 KWSERKDAVAELTKLAS-TKRIAP-GDF---TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (1974)
Q Consensus 298 KWkeRkEALe~L~~L~~-~pKi~~-~dy---~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~l 371 (1974)
+=.-+.-|++.|..++- --.... .+| .++++-+-.++. -.+..|--+.++|+..|-.+-+.++..--+.+|.-+
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VL 1229 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 1229 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 44467777777655431 111111 334 378888888887 677788899999999888887777776677888888
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHhc--CC------ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHHhhC---C----
Q 000166 372 LEKLKEKKPTVAESLTQTLQAMHKAG--CL------NLVDVVEDVKTSVKNKV-PLVRSLTLNWVTFCIETS---S---- 435 (1974)
Q Consensus 372 LeklKEKK~~V~eA~~~aLda~~~~~--~~------~l~~~~e~i~~al~~Kn-P~vk~etl~~L~r~l~~~---~---- 435 (1974)
---++|+...+++.+-+++..|+..+ ++ .+.|+++-+..+.+++. +.+=..++.+|..|.... +
T Consensus 1230 s~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076 1230 TTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 87889999999999999998887541 11 23355555555555554 666667777776552110 0
Q ss_pred -h------------------hH------HhHhhhhhHHHH---HhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 436 -K------------------AA------VLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 436 -~------------------~~------~~~~~k~~~~~l---~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
. .. -.....-+.|.+ ..+..|..++||+.|...|-.+++.-|.
T Consensus 1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 0 00 001113355544 4557899999999999999998888884
No 143
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=59.92 E-value=17 Score=49.67 Aligned_cols=122 Identities=22% Similarity=0.325 Sum_probs=94.0
Q ss_pred CCccccccCCc---HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc--cchhHh-HHHHHHHH
Q 000166 845 LPREDISGKFT---PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKN-LVMATLIT 918 (1974)
Q Consensus 845 lpRvDIs~kit---~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl--~DsNk~-lv~~al~i 918 (1974)
+|-.=|.+.++ |=++.-++=++=-+|.+.++.+.-.+.++. -+++.-++-+++-|-.-= .|+|-. |--.||+|
T Consensus 898 vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqc 976 (1030)
T KOG1967|consen 898 VPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQC 976 (1030)
T ss_pred CCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence 44444444444 345777888999999999999999999874 455544588888775543 345533 44579999
Q ss_pred HHHHHHhcChh-HHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc
Q 000166 919 LGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1974)
Q Consensus 919 i~~lA~amG~~-~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~ 967 (1974)
++.|.+-.-.+ .-.|..-++.+++.+|.|+|--||..|..|=..|+.-.
T Consensus 977 L~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 977 LNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred HHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 99999977654 56788899999999999999999999999999997643
No 144
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.29 E-value=90 Score=39.67 Aligned_cols=107 Identities=15% Similarity=0.253 Sum_probs=76.6
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-----hhhhHHH
Q 000166 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----LVDVVED 407 (1974)
Q Consensus 333 ~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-----l~~~~e~ 407 (1974)
.++.-|++|-..|+.-+..+-+.=-..-..|...+++.+.+.+-|.=..||++.-..++.+.-..|-. ..-++..
T Consensus 66 qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~y 145 (393)
T KOG2149|consen 66 QLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPY 145 (393)
T ss_pred hhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHH
Confidence 44455666666665555555554112233466778888999999999999999999999865432311 1124567
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000166 408 VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1974)
Q Consensus 408 i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1974)
|..||.|-.|.+|...+.||...+..+++...
T Consensus 146 i~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 146 ISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 88899999999999999999999998876543
No 145
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=58.20 E-value=72 Score=42.96 Aligned_cols=136 Identities=16% Similarity=0.168 Sum_probs=95.0
Q ss_pred CChhHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Q 000166 321 GDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1974)
Q Consensus 321 ~dy~dL~~~Lkk~l~--DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~ 398 (1974)
.+-.++++-|.+++. +-|+..-.+.-..+..+--|. -+..++++++..-|+=... + +.
T Consensus 269 ~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~------a~~~~ltpl~k~~k~ld~~--e---------yq--- 328 (690)
T KOG1243|consen 269 EEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD------AASDFLTPLFKLGKDLDEE--E---------YQ--- 328 (690)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc------cchhhhhHHHHhhhhcccc--c---------cc---
Confidence 345667777777665 555554444444444444332 3455566666655543321 0 11
Q ss_pred CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 399 ~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
..+++-|+.-++.---++|.-+|..+-..+...++..+. +.+.|.+..++.|+++.+|+....+|..+.-.+|+
T Consensus 329 ---~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~---d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 329 ---VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILN---DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred ---cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhc---chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 135666777777777899999999999888887776553 67899999999999999999999999999999999
Q ss_pred hHHH
Q 000166 479 RPLE 482 (1974)
Q Consensus 479 ~~l~ 482 (1974)
+.++
T Consensus 403 ~~Ln 406 (690)
T KOG1243|consen 403 RNLN 406 (690)
T ss_pred hhhc
Confidence 8543
No 146
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=57.55 E-value=78 Score=40.33 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=41.2
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000166 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1974)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1974)
++.|-+|..+++|+...-...++..+ ..++|.++.+|.+++.-|+--|+-|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l----~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQL----LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHH----HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHH----HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 78899999999999977666665544 67899999999999999999998775
No 147
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.31 E-value=1.3e+02 Score=44.06 Aligned_cols=188 Identities=16% Similarity=0.194 Sum_probs=131.3
Q ss_pred hhhhccCChHHHHHHHHHHHHhhhcCCCC--CCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000166 291 WEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1974)
Q Consensus 291 ~~~l~s~KWkeRkEALe~L~~L~~~pKi~--~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l 368 (1974)
..++.=++=+.|.-||++|..++++---. .+-|......+++++.|-+..|-..+.+++..+-+++++.-+||.+.++
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li 126 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLI 126 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 34454455677888999999887533322 2348889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhc--------C-CChhhhHHH----------------HHHHhhcCCchhHHHH
Q 000166 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--------C-LNLVDVVED----------------VKTSVKNKVPLVRSLT 423 (1974)
Q Consensus 369 ~~lLeklKEKK~~V~eA~~~aLda~~~~~--------~-~~l~~~~e~----------------i~~al~~KnP~vk~et 423 (1974)
|+.+--.=|-=..|-.|+.+.....+... | ..+.+++.+ -.+-++.|.+.|..+.
T Consensus 127 ~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ss 206 (1312)
T KOG0803|consen 127 PPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSS 206 (1312)
T ss_pred hhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHH
Confidence 99987776666666665555543322110 0 111122222 2356678889999999
Q ss_pred HHHHHHHHhhCChh-HHh---HhhhhhH--HHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 424 LNWVTFCIETSSKA-AVL---KVHKDYV--PICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 424 l~~L~r~l~~~~~~-~~~---~~~k~~~--~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
+.-+.+.+...... .+. .-.|.+. ..+-+.+.+.++.||.+..+++-.+.+-+=.
T Consensus 207 Ll~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 207 LLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred HHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 99888888543221 111 1112222 3466889999999999999998887765543
No 148
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=56.84 E-value=65 Score=34.46 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=75.4
Q ss_pred CCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC
Q 000166 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (1974)
Q Consensus 320 ~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~ 399 (1974)
|.++.+++..+-..+.. |..-+...+.++..+.+-+.. |.+.. ...+++..+.+++...+..++..
T Consensus 21 P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~----~~~~~------~~~~r~~~l~~~l~~~~~~i~~~--- 86 (148)
T PF08389_consen 21 PQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD----FRRSS------LSQERRRELKDALRSNSPDILEI--- 86 (148)
T ss_dssp TTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT----SHCCH------SHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh----hhchh------hhHHHHHHHHHHHHHHHHHHHHH---
Confidence 44455566666666654 466666777777777776654 21111 11234555555555555554442
Q ss_pred ChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000166 400 NLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1974)
Q Consensus 400 ~l~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1974)
+..+.....+. ++.+...++.-+..++.-.+...+. -..+++.++..+ ++++.|++|++||
T Consensus 87 -----l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~--~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 87 -----LSQILSQSSSEANEELVKAALKCLKSWISWIPIELII--NSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp -----HHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH--SSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred -----HHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc--cHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 22333222222 3788888888888888755544332 134889999999 5556699999986
No 149
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=55.78 E-value=59 Score=41.75 Aligned_cols=147 Identities=16% Similarity=0.247 Sum_probs=84.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH--------------hcCCCccchHHHHHHHHHHHHHHHHhcC
Q 000166 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVC--------------MLPGWSEKNVQVQQQVIEVINYLAATAT 675 (1974)
Q Consensus 610 L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~--------------~~PgwkesNfqV~~k~leil~~la~~~~ 675 (1974)
++|-.=|.|..|+--+...++..+. -++.-|+. ..-|.||+||..-.-.|+++..+.+...
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~-----~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk 79 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEK-----KVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSK 79 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhh-----hhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhH
Confidence 3455567788887777655555321 11222221 0126799999888888888877776432
Q ss_pred CCCccchhhhccchhhccccchhh----------hHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 000166 676 KFPKKCVVLCLLGISERVADIKTR----------AHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSA 745 (1974)
Q Consensus 676 ~fs~~~~~~~l~~lveKlgD~K~r----------~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~a 745 (1974)
.|- ...+-+||.-.- -.+..+|+.+-|+ .-+|.+.-.|+.+++..
T Consensus 80 ~fl---------s~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~----------------e~~~~~~tq~~kcla~l 134 (728)
T KOG4535|consen 80 QFL---------SVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVA----------------ESSSQTVTQIIKCLANL 134 (728)
T ss_pred HHH---------HHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHH----------------hcCchhHHHHHHHHHHH
Confidence 220 011122332111 0122233333333 33455555566666666
Q ss_pred HHHhccCccchH---hHHHHHhhhcCCCccHHHHHHHHHHHHHHH
Q 000166 746 VEDFGVSHLKLK---DLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1974)
Q Consensus 746 i~eFG~~~l~~K---~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly 787 (1974)
+..--+..+.+. .+..++|+. +.|++|+||-++..+++.+-
T Consensus 135 v~~~p~~~l~~~~~~~~~~~ik~~-i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 135 VSNAPYDRLKLSLLTKVWNQIKPY-IRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHH-hhcCCCChhhHHHHHHHHHH
Confidence 665555555443 455568998 99999999999999988764
No 150
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.15 E-value=1.5e+02 Score=39.21 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=104.7
Q ss_pred hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhH-HHHHHH-hcccC
Q 000166 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP-YVTTAL-TDAKL 985 (1974)
Q Consensus 908 Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~-~i~~~L-~~~~~ 985 (1974)
-|+|--..++|+..+..-.|.==+-...+++-.+.+++-|..+.||-.|.-||..+-+-.+-++... .+..++ .+. .
T Consensus 104 dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnD-P 182 (885)
T COG5218 104 DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQND-P 182 (885)
T ss_pred chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC-c
Confidence 3677778889999988888875566778899999999999999999999999999987776554433 333333 332 2
Q ss_pred CcchHHHHHHHHH--------------------------HHhccCCCC--cchhhhhhhHhhhccCCChHHHHHHHHHHH
Q 000166 986 GAEGRKDLFDWLS--------------------------KQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 986 ~p~~R~e~l~wL~--------------------------~~l~~~~~~--~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
+.++|.-++.-+. ++|+.+... .....-+.-+--+|+||.-+||+++..++.
T Consensus 183 S~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 183 SDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred HHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHH
Confidence 4667766654332 122222110 001111111222589999999999999988
Q ss_pred HHHHhcCHHHHHHHhhccCchhHHHHHHHHHh
Q 000166 1038 EILRAGGQETIEKNLKDIQGPALALILERIKL 1069 (1974)
Q Consensus 1038 ~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k 1069 (1974)
.-+..--.-.....+..|+-......+..+++
T Consensus 263 ~~w~~~~d~~lveLle~lDvSr~sv~v~aik~ 294 (885)
T COG5218 263 SAWRIPEDLRLVELLEFLDVSRRSVLVAAIKG 294 (885)
T ss_pred HHhcccccccHHHHHHHHhhhhHHHHHHHHHH
Confidence 77766555555566677775555444444444
No 151
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=54.74 E-value=48 Score=33.90 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=59.5
Q ss_pred HHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHH
Q 000166 1293 LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 1368 (1974)
Q Consensus 1293 f~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k 1368 (1974)
|.-.+.-+.+...=.|++.|..|..+|++.-..+....+.+...-.++.|.|+=|==+|+++|+++-...++.+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 4444455566666779999999999999988333334566789999999999999999999999998777776553
No 152
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=54.47 E-value=6.7e+02 Score=33.45 Aligned_cols=115 Identities=15% Similarity=0.218 Sum_probs=83.0
Q ss_pred cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh---HHHHHHHhhcC--CchhHHHHHHHHHHHHh
Q 000166 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV---VEDVKTSVKNK--VPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 358 ~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~---~e~i~~al~~K--nP~vk~etl~~L~r~l~ 432 (1974)
..|.+-...++|++|.|+.-.=..||..+.+.|.-+-.. .-+...| ++.++.-.++. ++.||-=++.|+...+.
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~R-ik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKR-IKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-hccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 347778889999999999999999999999999988775 3232222 46666555544 49999999999999998
Q ss_pred hCChhHHhHhhhhhHHHHHhhhCCCCH---HHHHHHHHHHHHHHHHhC
Q 000166 433 TSSKAAVLKVHKDYVPICMECLNDGTP---EVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 433 ~~~~~~~~~~~k~~~~~l~k~l~Ds~~---~VR~aA~~~l~~lmk~~G 477 (1974)
..+...- ..++|.+++++..... ++.......+..+.++..
T Consensus 94 Rl~~~e~----~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLP 137 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCC
Confidence 8766554 6789999999975443 333334444444445543
No 153
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=53.99 E-value=1.2e+02 Score=34.70 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=83.4
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhh
Q 000166 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1974)
Q Consensus 365 ~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k 444 (1974)
..+++.||+..-.....|+.++.+.+..+..+|-+++..+++-+..-..+.||.+|..+..-+....++++.-...++.+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~ 86 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSE 86 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45688899999999999999999999999999889999999999988889999999999999998888775443333322
Q ss_pred hhH---HHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 445 DYV---PICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 445 ~~~---~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
.+- ..-..+-.|.....+......++.++.+++
T Consensus 87 gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 87 GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 211 111223344444333336666777776666
No 154
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.87 E-value=34 Score=43.18 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=89.2
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhH-Hhhh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV-EKSS 934 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~-~k~~ 934 (1974)
.+++.+++--|=|+|++||..+..++.. ++-+--.-+-+|+.-+..++.|--..+-.-..+.+..+...+++.- +.+.
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4788999999999999999999999974 5555544457888888899988888887777788888788887765 6677
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000166 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1974)
..+++-+.......-+.+|.-+...++-.++.++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 7777777777777777777777777777777665
No 155
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=53.78 E-value=1.3e+02 Score=36.80 Aligned_cols=137 Identities=13% Similarity=0.209 Sum_probs=104.3
Q ss_pred ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----cccc--hhhhHHHHHHHhc--------cCCHHHHHHHH
Q 000166 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FSGS--SRFLLPVLLEKLK--------EKKPTVAESLT 387 (1974)
Q Consensus 322 dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~----F~~y--~~~~l~~lLeklK--------EKK~~V~eA~~ 387 (1974)
...-++..+=.++.|....+-..+++|+..|...+... |.++ ...+...+...+- +.-..+..++-
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 45566777778888999999999999999999988643 3433 7778888888887 88899999999
Q ss_pred HHHHHHHHhc--------CCChhhhHHH-HHHHhh--cC--CchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhh
Q 000166 388 QTLQAMHKAG--------CLNLVDVVED-VKTSVK--NK--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1974)
Q Consensus 388 ~aLda~~~~~--------~~~l~~~~e~-i~~al~--~K--nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l 454 (1974)
.||..++... ...+++++-+ |+..+. .+ +|.++.-.+..+..++........ +.++.++|.+...+
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~-~hL~rii~~l~~~l 274 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSV-KHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHh
Confidence 9999996520 1235566644 776664 33 688988888888888887655443 66788999999998
Q ss_pred CCCCH
Q 000166 455 NDGTP 459 (1974)
Q Consensus 455 ~Ds~~ 459 (1974)
.+.+.
T Consensus 275 ~npf~ 279 (282)
T PF10521_consen 275 ENPFG 279 (282)
T ss_pred cCCCc
Confidence 88764
No 156
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=53.55 E-value=13 Score=32.41 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.5
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000166 444 KDYVPICMECLNDGTPEVRDAAFSVL 469 (1974)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1974)
..+...+.+.+.|+++.||+||.+++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45778899999999999999998764
No 157
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.35 E-value=8.1e+02 Score=34.12 Aligned_cols=198 Identities=15% Similarity=0.175 Sum_probs=139.6
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc-hhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y-~~~ 366 (1974)
.++...+.|.|=.++.||+..+..++..- .|-++++.+.-|-+.--|+-|--+--=-+=..| .+.+- +-.
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYA-----EeqpdLALL 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYA-----EEQPDLALL 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHh-----hcCCCceee
Confidence 56777889999999999999998865321 257888888777777666665544433333333 23444 444
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh
Q 000166 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1974)
Q Consensus 367 ~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1974)
-+..+=.-|||.++-+|..+..+|..|=-. .+.. ++--|..+..+-.|-||..+.+-+..+..-.+. ....
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-----~k~q 180 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-----QKDQ 180 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-----hHHH
Confidence 567777889999999999888888766321 1222 234556677788899999999998888764321 1135
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHH----HHhC--hhHHHHHhhcCCHHHHHHHHHHHhc
Q 000166 446 YVPICMECLNDGTPEVRDAAFSVLAAIA----KSVG--MRPLERSIEKLDDVRRNKLSEMIAG 502 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lm----k~~G--e~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1974)
+...+-++|.|.++-|--+|..|+..+. .+++ +|.+=.++.++|+=-.--+..++-+
T Consensus 181 L~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~R 243 (968)
T KOG1060|consen 181 LEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTR 243 (968)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 6778889999999999999998887764 3444 7778888888887666666666543
No 158
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=52.51 E-value=20 Score=30.48 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.6
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 445 DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
..+|.++.+|.+.+++||+.|+.+|+-|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47999999999999999999999998774
No 159
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=51.88 E-value=30 Score=39.06 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHhhchHhHHHHHHHhhhh----cCChhhHHHHHHHHHHHHH-HhccC-ccchHhHHHHHhhhcCCCc
Q 000166 698 TRAHAMKCLTTFSEAVGPGFIFERLYKIMKD----HKNPKVLSEGILWMVSAVE-DFGVS-HLKLKDLIDFCKDTGLQSS 771 (1974)
Q Consensus 698 ~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~----~KnPKv~ae~l~wl~~ai~-eFG~~-~l~~K~lI~~~k~~~L~~s 771 (1974)
+|......+..|.+.-|...+++-+...... .+....+.+|+.++..+++ ..|.. ++.-...+..+-.+ |.++
T Consensus 92 Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~-L~s~ 170 (187)
T PF06371_consen 92 LRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALS-LDSP 170 (187)
T ss_dssp HHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TT
T ss_pred hccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHH-HCCC
Confidence 4555566778888888887777765554322 2446789999999988877 56654 34556777777775 9999
Q ss_pred cHHHHHHHHHHHHHH
Q 000166 772 AAATRNATIKLLGAL 786 (1974)
Q Consensus 772 N~~VR~aAi~Ll~~l 786 (1974)
|+.+|..++.+|..+
T Consensus 171 ~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 171 NIKTRKLALEILAAL 185 (187)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999876
No 160
>PF05536 Neurochondrin: Neurochondrin
Probab=50.82 E-value=7.8e+02 Score=33.20 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHH-HhccCcc----chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHH
Q 000166 733 KVLSEGILWMVSAVE-DFGVSHL----KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807 (1974)
Q Consensus 733 Kv~ae~l~wl~~ai~-eFG~~~l----~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~ 807 (1974)
-+..+|+..+..+.. +=|...+ .+..+.+.+.+ ++.+...|..++..+....|...+.--...--.++.
T Consensus 114 ~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~------~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~ 187 (543)
T PF05536_consen 114 ETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN------QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILP 187 (543)
T ss_pred hHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh------CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHH
Confidence 566666666665542 1121111 22344443332 567788999999888777775554422122234556
Q ss_pred HHHHHHhcCC
Q 000166 808 ALDAEYEKNP 817 (1974)
Q Consensus 808 ~Ie~EF~K~~ 817 (1974)
.|-..|....
T Consensus 188 ~La~~fs~~~ 197 (543)
T PF05536_consen 188 SLARDFSSFH 197 (543)
T ss_pred HHHHHHHhhc
Confidence 6777777553
No 161
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=50.09 E-value=49 Score=35.01 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=59.4
Q ss_pred cchHHHHHhhhc-cCChhhHhHHHHHHHHHHHhhcCccccccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHh-c---
Q 000166 1290 TKTLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKIL-G--- 1363 (1974)
Q Consensus 1290 skvf~~l~~glk-sKN~r~R~EcL~el~~li~~~G~~v~~~~Ka-l~~iA~~i~drD~~VR~AALn~l~~~Y~~~-G--- 1363 (1974)
.++.|++.+|++ +++.-.|..|.-.++.+-.+.-++- .-.++ ++.|++.....+. .+.||.||+..|... +
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-EVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 468899999999 9999999999999999987766642 01123 2556655544444 577999999998776 3
Q ss_pred --hhHHHHhccCCH
Q 000166 1364 --EDIWRYVGKLTD 1375 (1974)
Q Consensus 1364 --d~v~k~vg~ls~ 1375 (1974)
+++++.+-+++.
T Consensus 82 lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 82 LPRKVFKALLKLPD 95 (121)
T ss_pred CCHHHHHHHHcCcc
Confidence 236666666654
No 162
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.71 E-value=4e+02 Score=33.64 Aligned_cols=195 Identities=11% Similarity=0.151 Sum_probs=116.6
Q ss_pred CCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhc----CCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 000166 276 VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGN 351 (1974)
Q Consensus 276 ~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~----pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~ 351 (1974)
..+.++...+| .+.-.-.+..=.+|-+||+.|..++.+ ..|.+ .|-+...|. .+.+++-.|-..|+.+|+.
T Consensus 76 ~~~~~~~~~~~--~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt 150 (342)
T KOG2160|consen 76 KVISDVMSMIP--IVILNSSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGT 150 (342)
T ss_pred hhHHHHHHhhh--hhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHH
Confidence 34455555533 343344567788888999999887643 33333 333455555 8889999999999999998
Q ss_pred HHHHhccc----cccchhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCChhhh-----HHHHHHHhhc--CCchh
Q 000166 352 LARGLRTH----FSGSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDV-----VEDVKTSVKN--KVPLV 419 (1974)
Q Consensus 352 LA~gLr~~----F~~y~~~~l~~lLeklK-EKK~~V~eA~~~aLda~~~~~~~~l~~~-----~e~i~~al~~--KnP~v 419 (1974)
.+.-=-+- +.. ..+..++..|. |.--.|+..+.=|+-++....--....+ ...+..+|+. ..+..
T Consensus 151 ~~qNNP~~Qe~v~E~---~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~l 227 (342)
T KOG2160|consen 151 AVQNNPKSQEQVIEL---GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKL 227 (342)
T ss_pred HHhcCHHHHHHHHHc---ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHH
Confidence 87642211 111 14566666665 3334455556566665555411111111 2456788887 56888
Q ss_pred HHHHHHHHHHHHhhCChhHHhHhhhh--hHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000166 420 RSLTLNWVTFCIETSSKAAVLKVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1974)
Q Consensus 420 k~etl~~L~r~l~~~~~~~~~~~~k~--~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1974)
|.-++.++...+.......- +.+. +.-.+.....--+.++++++..++-++...+-.+.
T Consensus 228 krK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 228 KRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred HHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 88899888888875432211 1111 22233344455567899999888888887766444
No 163
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.06 E-value=1.4e+02 Score=37.68 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=74.9
Q ss_pred HHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC---h----hhhHHHHHHHhhcCC-chhHHHH
Q 000166 352 LARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---L----VDVVEDVKTSVKNKV-PLVRSLT 423 (1974)
Q Consensus 352 LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~---l----~~~~e~i~~al~~Kn-P~vk~et 423 (1974)
+|..++..| .-.+.++-.|..|+.-+-++|+--+..-||+++.. |-+ + -++..++...+.+|. |.|+.-.
T Consensus 32 vCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~N-Cg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~ 109 (462)
T KOG2199|consen 32 VCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVAN-CGKRFRLEVSSRDFTTELRALIESKAHPKVCEKM 109 (462)
T ss_pred HHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh-cchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHH
Confidence 455556666 56788899999999999999999999999999987 743 2 245556666666444 8999887
Q ss_pred HHHHHHHHhhCChhHHhHhhhhhHHHHHh----hhCCCCHHHHHHHHH
Q 000166 424 LNWVTFCIETSSKAAVLKVHKDYVPICME----CLNDGTPEVRDAAFS 467 (1974)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k~~~~~l~k----~l~Ds~~~VR~aA~~ 467 (1974)
-..+..+.+.+.+..-..++.+++.-+.+ .+.+.+.....+...
T Consensus 110 ~~lv~eWsee~K~Dp~lsLi~~l~~klk~~g~~f~~~~~k~~k~a~~~ 157 (462)
T KOG2199|consen 110 RDLVKEWSEEFKKDPSLSLISALYKKLKEEGITFLVAGSKPEKHAMST 157 (462)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHcCCCcccCCCchhHHHhhc
Confidence 77777777665554433333333333332 234455444444433
No 164
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.64 E-value=2.7e+02 Score=38.55 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccchh-hhHHHHHHHhccCCH-HHHHHHHHHHHHHHHhc--
Q 000166 323 FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLLEKLKEKKP-TVAESLTQTLQAMHKAG-- 397 (1974)
Q Consensus 323 y~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~-~~l~~lLeklKEKK~-~V~eA~~~aLda~~~~~-- 397 (1974)
...++..|.++++ ..|.-++.+|++|+..|+..+....+--+. ..+|.+++||-.=-- -|.|...+||.-+...+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 5579999999999 999999999999999999999877654433 468888888754221 23344444444443321
Q ss_pred -C---CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 398 -C---LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 398 -~---~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
| -.|.+++. ++.==.=.+...++.-.+.|-.+.++..+ ..+-..+|.|..+|.-.+.-+=+..+-|+..+.
T Consensus 289 AiL~AG~l~a~Ls----ylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 289 AILQAGALSAVLS----YLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHhcccHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 0 01222221 11100001111222233333333333222 233455677777776666666777777766665
Q ss_pred HHh
Q 000166 474 KSV 476 (1974)
Q Consensus 474 k~~ 476 (1974)
--+
T Consensus 364 d~f 366 (1051)
T KOG0168|consen 364 DGF 366 (1051)
T ss_pred Hhc
Confidence 443
No 165
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.58 E-value=1.3e+02 Score=44.88 Aligned_cols=224 Identities=16% Similarity=0.197 Sum_probs=135.3
Q ss_pred HHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCC-CCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCC
Q 000166 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVP 267 (1974)
Q Consensus 189 ~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~-~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (1974)
.-++-|.|+|+-.. +...=-++++-+|++.....+.++.+. ..|+|.+-+..-.+. -. .|+
T Consensus 23 p~~~~e~l~~l~~~-l~~~~ke~~l~tQ~~~~~~l~s~~~~~~~~p~rkL~s~~i~rl-----~~-~gd----------- 84 (2067)
T KOG1822|consen 23 PVFCLEWLRYLERN-LNEEQKEDLLVTQLKLEQQLISRLTNGAGPPTRKLISVAIARL-----IS-NGD----------- 84 (2067)
T ss_pred cHHHHHHHHHHHhc-CCcchhHHHHHHhHHHHHHHHHHHccCCCchhHHHHHHHHHHH-----Hh-ccc-----------
Confidence 34666777776532 222223789999999999999998765 578875432211110 01 011
Q ss_pred CCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcchhHHHHHHHH
Q 000166 268 PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAI 346 (1974)
Q Consensus 268 ~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~ 346 (1974)
.++-|+++. .. .+|...-.-+.-+....++.-+..+.. --+-..-.|.|.++.+.+..+-.-..+.....
T Consensus 85 -~f~~~~~l~------~c--~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~ 155 (2067)
T KOG1822|consen 85 -SFSLYSRLN------SC--NDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIM 155 (2067)
T ss_pred -hhhHHHHHH------Hh--hhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 122232222 22 234442233445555566665554432 22222334899999999999877778888888
Q ss_pred HHHHHHHHHhc--cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHH
Q 000166 347 QAIGNLARGLR--THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTL 424 (1974)
Q Consensus 347 ~~i~~LA~gLr--~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl 424 (1974)
..+....+||+ ..-.-|.+.+.-..--.+-|+--+|+.|+..|+-++...+...+ +.
T Consensus 156 ~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~~------------------~~--- 214 (2067)
T KOG1822|consen 156 ITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLGGPGL------------------GT--- 214 (2067)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhcCccc------------------cc---
Confidence 89999999999 43334445555555555566677788888888877765422111 10
Q ss_pred HHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q 000166 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1974)
Q Consensus 425 ~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~ 476 (1974)
+. +..+...+.+.+++++-+||.+=+++++.+.-.-
T Consensus 215 ------------Se----le~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 215 ------------SE----LETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred ------------hh----hhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 11 1344566778888888999998888888876543
No 166
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=48.53 E-value=15 Score=32.07 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred hhhHHHHHHhccCchhHHHHHHHHH
Q 000166 936 GVLSDILKCLGDNKKHMRECTLTVL 960 (1974)
Q Consensus 936 ~l~~~il~~l~D~K~~vR~aa~~al 960 (1974)
.+...|..+|.|+++.||+||++.+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5677888999999999999998764
No 167
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=48.32 E-value=93 Score=35.00 Aligned_cols=69 Identities=14% Similarity=0.025 Sum_probs=53.8
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc--CCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLR 357 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~--pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr 357 (1974)
-...-+.++.+..|-.++-=+..++.+ +.+--..|+..++.|-++|. +....+...|+.++..|-.-++
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344556888899999998888776654 44444678999999999998 7778888889988888876665
No 168
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.74 E-value=1.1e+02 Score=44.56 Aligned_cols=116 Identities=10% Similarity=0.123 Sum_probs=94.1
Q ss_pred ccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcCh
Q 000166 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1974)
Q Consensus 849 DIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~ 928 (1974)
|+++. +..+++++..+|=+++.-||.++.+++++.|--.--+.++....-.++-..|-+.-|-.++-+++..+-+++++
T Consensus 38 ~~dse-l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 38 ELDSE-LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred ccCHH-HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 34443 34567899999999999999999999975432222223466777778888999999999999999999999999
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH
Q 000166 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 965 (1974)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~ 965 (1974)
...+|.|.++|.++...-|--..|-.+|-+.....+.
T Consensus 117 ~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 117 KLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 9999999999999999999888888777776655444
No 169
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=46.92 E-value=1.6e+02 Score=33.09 Aligned_cols=146 Identities=12% Similarity=0.175 Sum_probs=83.7
Q ss_pred CChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH--hccCCHHHHHHHHHHHHHHHHhc
Q 000166 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK--LKEKKPTVAESLTQTLQAMHKAG 397 (1974)
Q Consensus 321 ~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLek--lKEKK~~V~eA~~~aLda~~~~~ 397 (1974)
.+|-+|...|-.+|. +.+..+-..+++++|.|.. -.||..-.+..-.+- -.+......+... -+...
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l----~~~~~- 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKSIQKSLDSKSSENSNDESTDISL----PMMGI- 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhcccccCCccccccccccchhhHH----hhccC-
Confidence 479999999999998 8889999999999999862 344433221111110 0111111111111 11111
Q ss_pred CCChhhhHHHH-----HHHhhcCC-chhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000166 398 CLNLVDVVEDV-----KTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1974)
Q Consensus 398 ~~~l~~~~e~i-----~~al~~Kn-P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1974)
..+.++....+ ...|+++. ..-...+..=+...|+.....+ .+++..++|.++..+...++..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11333333222 22222222 2222233333344444433333 45678899999999999999999999999999
Q ss_pred HHHHhC
Q 000166 472 IAKSVG 477 (1974)
Q Consensus 472 lmk~~G 477 (1974)
|+.+++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 998874
No 170
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=46.87 E-value=2.1e+02 Score=34.71 Aligned_cols=169 Identities=12% Similarity=0.129 Sum_probs=103.6
Q ss_pred hhhhccCChHHHHHHHHHHHHhhhcCCCCC--CChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 291 WEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 291 ~~~l~s~KWkeRkEALe~L~~L~~~pKi~~--~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
.+-+.++.=+.|..||..|..+..+..-.. ..| +...+..+++ ..|-.+.+.+++.|..|. +-.++..-....
T Consensus 60 ~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~ 135 (254)
T PF04826_consen 60 GSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANY 135 (254)
T ss_pred HHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhh
Confidence 334566777889889999988754322111 235 5566666666 567777788999999986 333333335567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh-----HHHHHHHhhcC-CchhHHHHHHHHHHHHhhC-------
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-----VEDVKTSVKNK-VPLVRSLTLNWVTFCIETS------- 434 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~-----~e~i~~al~~K-nP~vk~etl~~L~r~l~~~------- 434 (1974)
+|.++.-+-.-...++..+..+|--+.... .-..++ +..+..-++.. .-.+-..++.|+.+.-...
T Consensus 136 i~~ll~LL~~G~~~~k~~vLk~L~nLS~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~ 214 (254)
T PF04826_consen 136 IPDLLSLLSSGSEKTKVQVLKVLVNLSENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVF 214 (254)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccccee
Confidence 777777777777777777777777665431 001122 23344444444 3466667777777654321
Q ss_pred -----ChhHHhH---hhhhhHHHHHhhhCCCCHHHHHH
Q 000166 435 -----SKAAVLK---VHKDYVPICMECLNDGTPEVRDA 464 (1974)
Q Consensus 435 -----~~~~~~~---~~k~~~~~l~k~l~Ds~~~VR~a 464 (1974)
+..++.. ..+.+..-+..+.++++++||+.
T Consensus 215 ~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 215 VQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred ccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 2222221 22557777778889999999974
No 171
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=46.71 E-value=3.2e+02 Score=32.78 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=49.5
Q ss_pred hcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh
Q 000166 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (1974)
Q Consensus 334 l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~ 413 (1974)
+.|.|..|+-.+++|.+.+ +|.+|+.. ... ..+=+.|. .+..+-+.|+.-+.
T Consensus 2 l~d~d~~v~K~~I~~~~~i---------------y~~~~~~i-~~~-------~~~~~~W~-----~~~~lK~~Il~~~~ 53 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSI---------------YPLVFRWI-CVN-------PSDEQLWE-----SMNELKDRILSLWD 53 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHH---------------HHHHHHHH-S---------HHHHHHHH-----HHHHHHHHHHHGGG
T ss_pred CCCCcHHHHHHHHHHHHHH---------------HHHHHHHH-cCC-------chHHHHHH-----HHHHHHHHHHHHhc
Confidence 5688999999999888755 34444444 111 11122232 24456788888899
Q ss_pred cCCchhHHHHHHHHHHHHhhC
Q 000166 414 NKVPLVRSLTLNWVTFCIETS 434 (1974)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~ 434 (1974)
+.||.||..+++|+.+++-..
T Consensus 54 ~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999998543
No 172
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=46.56 E-value=2.3e+02 Score=37.56 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCh-hhhhhhhHHHHHHHhhhhcCChhhHHHHHHHHHHHHhhchhhhHHHHHHHHhhccCch----
Q 000166 69 QDKALDALIAYLKAADA-DAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAK---- 143 (1974)
Q Consensus 69 qEk~leal~~~l~~a~~-~~~~~~~~v~~~lveK~L~~r~ktk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PK---- 143 (1974)
|..-|.-|...|..-+. .+.+..-+.+.-+++- .|.-|++|.|.++.|||=.....+.=-++..+..--||
T Consensus 410 ~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~----~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P 485 (898)
T COG5240 410 KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN----DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP 485 (898)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh----CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc
Q ss_pred -----------------hHHHHHHHHHHHHHhhCC---CccChhHHHhhchhhhcCCChhHHHHHHHHHHHH
Q 000166 144 -----------------AVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195 (1974)
Q Consensus 144 -----------------vvaaai~~l~~~l~~FG~---kvv~~K~ilk~l~~lf~h~dk~VR~ea~~L~vel 195 (1974)
|.++|+.+| ..||. .++.+..+.-.|+..++++|-.||+-|.-++-.|
T Consensus 486 ~~yvrhIyNR~iLEN~ivRsaAv~aL----skf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 486 GKYVRHIYNRLILENNIVRSAAVQAL----SKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHH----HHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
No 173
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.18 E-value=1.2e+02 Score=43.28 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=75.2
Q ss_pred HHHHH-HHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCC
Q 000166 380 PTVAE-SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (1974)
Q Consensus 380 ~~V~e-A~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~ 458 (1974)
+.||- ++..+-|--+.+ ..-++.+-+.+..-|..-+|+||..++.-|+..+-+. ..+ .|..++-++.|+.|.+
T Consensus 975 p~IRsN~VvalgDlav~f-pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~ 1048 (1251)
T KOG0414|consen 975 PRIRSNLVVALGDLAVRF-PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPN 1048 (1251)
T ss_pred ceeeecchheccchhhhc-ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCc
Confidence 33443 344445555554 2345566677778888999999999988888877532 112 2678888999999999
Q ss_pred HHHHHHHHH--------------HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000166 459 PEVRDAAFS--------------VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1974)
Q Consensus 459 ~~VR~aA~~--------------~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1974)
++||+-|.. .|.-|+-++|.. .|+..+-+.|.+++=|
T Consensus 1049 ~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~-------~l~~~~~~~vm~~li~ 1099 (1251)
T KOG0414|consen 1049 AEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNG-------NLEEESYKTVMEFLIG 1099 (1251)
T ss_pred HHHHHHHHHHHHHhhhcccchhhhchHHHHhhccC-------cccchhhHHHHHHHHH
Confidence 999999984 445555555543 5667777777777654
No 174
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=45.28 E-value=1.6e+02 Score=42.94 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=75.1
Q ss_pred HhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc--CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 355 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 355 gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~--~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
+....|.+....++.-||--++|-+.+||.-+..||..++..- .....++.+-|-.-+.+-..+||..++..+.|.+-
T Consensus 805 a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 805 AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 3445566666677777888899999999999999999988751 12233555555555556667777777777777765
Q ss_pred hCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 433 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 433 ~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
..+. ....+-..+...+.|+...||+-+..-+-.+
T Consensus 885 ~~~e-----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdi 919 (1692)
T KOG1020|consen 885 SIPE-----LIFQYYDQIIERILDTGVSVRKRVIKILRDI 919 (1692)
T ss_pred ccHH-----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Confidence 4321 1234555666777777777777776544443
No 175
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=45.25 E-value=1.6e+02 Score=36.10 Aligned_cols=127 Identities=14% Similarity=0.207 Sum_probs=76.1
Q ss_pred hhhHHHHHHh-ccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhc---ccC-CcchHHHHHHHHHHHhccCCC---C
Q 000166 936 GVLSDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD---AKL-GAEGRKDLFDWLSKQLTGLSG---F 1007 (1974)
Q Consensus 936 ~l~~~il~~l-~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~---~~~-~p~~R~e~l~wL~~~l~~~~~---~ 1007 (1974)
..+--|+..| -+...++|+||+++| ...-|+-.++|++.-.+.. .|. |-+ +-.++-.+.-.|-..+. .
T Consensus 197 ~YF~kvisal~dEs~~~~r~aAl~sL---r~dsGlhQLvPYFi~f~~eqit~Nl~nl~-~LtTv~~m~~sLL~N~~iFvd 272 (450)
T COG5095 197 MYFDKVISALLDESDEQTRDAALESL---RNDSGLHQLVPYFIHFFNEQITKNLKNLE-KLTTVVMMYSSLLKNKYIFVD 272 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHhcCCceeec
Confidence 3344444444 457778999988776 4567899999987777752 222 111 12222222223322222 2
Q ss_pred cchhhhhhhHhhhcc-----CCChH-----HHHHHHHHHHHHHHhcCHHHHHHHhhccCch-hHHHHHHHHHhcc
Q 000166 1008 PDAAHLLKPASIAMT-----DKSSD-----VRKAAEACIVEILRAGGQETIEKNLKDIQGP-ALALILERIKLNG 1071 (1974)
Q Consensus 1008 ~~~~~~~~p~~~~L~-----Dr~~d-----VRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~-~~~~i~~~l~k~~ 1071 (1974)
|-+.+++..++.||- ...-| +|+-|..+|+++...+|. .-+.|||- ..+..++++|..+
T Consensus 273 PY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~-----~YktLkPRvtrTllKafLD~~k 342 (450)
T COG5095 273 PYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS-----SYKTLKPRVTRTLLKAFLDREK 342 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH-----hhhhhchHHHHHHHHHHHhccc
Confidence 344555555888852 22233 999999999999887654 45677774 4566778888755
No 176
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=42.46 E-value=1.5e+02 Score=33.40 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=60.9
Q ss_pred hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCC-CHHHHHHHHHHHHHHHHHhCh
Q 000166 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 401 l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds-~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
+..+...|...+.+++|..|-.-+..+.-.++..+...+......++..+++.|+.. .+.++++++.++..|+..++.
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 445667788899999999997777777777777666666555577888899888664 456799999999999988773
No 177
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=42.11 E-value=5.4e+02 Score=28.83 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=89.0
Q ss_pred CCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCH-HHHHHHHHHHHHHH
Q 000166 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKP-TVAESLTQTLQAMH 394 (1974)
Q Consensus 316 pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~-~V~eA~~~aLda~~ 394 (1974)
.|+.++++..++..|.+...+.|.......+++|-.-|.... .|.++ ...++..+....+ .++..+.+.+...+
T Consensus 9 nklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~----~a~l~~~l~~~~~~~f~~~ll~~~~~~f 83 (209)
T PF02854_consen 9 NKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPL----YARLCAALNSRFPSEFRSLLLNRCQEEF 83 (209)
T ss_dssp HHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHH----HHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 356688999999999999874488888888888866666654 34333 3344444444444 67766666655555
Q ss_pred HhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC--ChhHHhHhhhhhHHHHHhhhCCCC-HHHHHHHHHHHHH
Q 000166 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS--SKAAVLKVHKDYVPICMECLNDGT-PEVRDAAFSVLAA 471 (1974)
Q Consensus 395 ~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~--~~~~~~~~~k~~~~~l~k~l~Ds~-~~VR~aA~~~l~~ 471 (1974)
.... ...-.+......-+-+...+.|++..+... +...+ -.++-.++....+.. +.--+...+++.+
T Consensus 84 ~~~~------~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i----~~~l~~ll~~~~~~~~~~~~~~~ie~~~~ 153 (209)
T PF02854_consen 84 EERY------SNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKII----FDILRELLSDGTDECQPPPDEENIECLCT 153 (209)
T ss_dssp HHHT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH----HHHHHHHHHHTSHHCCHHTCHHHHHHHHH
T ss_pred HHhh------hhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhH----HHHHHHHHhcccccccCCCcHhHHHHHHH
Confidence 4311 111222333444455668888999887643 22222 223333333332211 3556677889999
Q ss_pred HHHHhChh
Q 000166 472 IAKSVGMR 479 (1974)
Q Consensus 472 lmk~~Ge~ 479 (1974)
++..+|..
T Consensus 154 lL~~~G~~ 161 (209)
T PF02854_consen 154 LLKTCGKK 161 (209)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999965
No 178
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=41.66 E-value=4.1e+02 Score=35.81 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-CCChh
Q 000166 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLV 402 (1974)
Q Consensus 324 ~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~-~~~l~ 402 (1974)
.+-+.++-.++.|-.+.|-..|++-|-.+|+.= ..|+.-+.-.|..-|..--+..++++.++|..++... -.+|.
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~ 133 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT 133 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 456788888999999999999999999999873 2466666777777777888899999999999999851 12233
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHh--Hhh-hhhHHHHHhhhCC
Q 000166 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL--KVH-KDYVPICMECLND 456 (1974)
Q Consensus 403 ~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~--~~~-k~~~~~l~k~l~D 456 (1974)
.+...|... ..-...+|..++.||...+...+...+. +.. .-++..+-+.|.|
T Consensus 134 ~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 134 GLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 444444321 2456789999999999888765444332 222 3355666678877
No 179
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=41.12 E-value=2.6e+02 Score=31.87 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=77.2
Q ss_pred cchhhhHHHHHHHhccCCH------------------HHHHHHHHHHHHHHHh--cCCChhhhHHHHHHHhhcCCchhHH
Q 000166 362 GSSRFLLPVLLEKLKEKKP------------------TVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (1974)
Q Consensus 362 ~y~~~~l~~lLeklKEKK~------------------~V~eA~~~aLda~~~~--~~~~l~~~~e~i~~al~~KnP~vk~ 421 (1974)
+|...++|.++..++-++. .+|-++-+||.++... ..+.+.++++.|..++++ .+.+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 5667788888888887774 6788999999999886 225577888999999999 999999
Q ss_pred HHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHH
Q 000166 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (1974)
Q Consensus 422 etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~ 499 (1974)
-+...|.|.....+.... ..+..+++++-+.| -+-+.+.+...-+++.++..|.-++-.
T Consensus 84 L~~~~l~kl~~~~p~~v~-~~Ld~l~~~l~~~L------------------~~k~k~~AvkQE~Ek~~E~~rs~lr~~ 142 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPEEVL-QRLDSLVEPLRKTL------------------SKKLKENAVKQEIEKQQELIRSVLRAV 142 (169)
T ss_dssp HHHHHHHHHHHS-HHHHH-HCCTTTHHHHHHHH------------------H----TTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHHh------------------hccCCCCcccccHHHHHHHHHHHHHHH
Confidence 999999999765544333 22455555554443 334455556666666666666555443
No 180
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=39.90 E-value=1.3e+02 Score=36.75 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=73.8
Q ss_pred cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh---cCC--chhHHHHHHHHHHHHhhCCh
Q 000166 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---NKV--PLVRSLTLNWVTFCIETSSK 436 (1974)
Q Consensus 362 ~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~---~Kn--P~vk~etl~~L~r~l~~~~~ 436 (1974)
-|..-++.+| +-|.....++|+.++|.. -.+|.++++.+..++. .|| -.++.-|+.-++-.|-..+.
T Consensus 197 ~YF~kvisal---~dEs~~~~r~aAl~sLr~-----dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~ 268 (450)
T COG5095 197 MYFDKVISAL---LDESDEQTRDAALESLRN-----DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKY 268 (450)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhcc-----CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCc
Confidence 3555555666 346667788887777652 2467777776665553 222 22333333333333322221
Q ss_pred hHHhHhhhhhHHHHHhhh------CCCCH----HHHHHHHHHHHHHHHHhChhHHHHHhhcCCH-HHHHHHHHHHhc
Q 000166 437 AAVLKVHKDYVPICMECL------NDGTP----EVRDAAFSVLAAIAKSVGMRPLERSIEKLDD-VRRNKLSEMIAG 502 (1974)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l------~Ds~~----~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~-~kk~KI~e~~~~ 502 (1974)
--+.+.+.+++|.++.|+ ++.+- .+||-|+..++...+.+|.- ...|+| .-+..++..++.
T Consensus 269 iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~-----YktLkPRvtrTllKafLD~ 340 (450)
T COG5095 269 IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS-----YKTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh-----hhhhchHHHHHHHHHHHhc
Confidence 112356678889888876 33322 49999999999999988831 123333 345666777764
No 181
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.55 E-value=4.8e+02 Score=37.46 Aligned_cols=197 Identities=16% Similarity=0.191 Sum_probs=111.1
Q ss_pred cCChHHHHHHHHHHHH-hhhcCCCCCCCh-hHHHHHHHHHh---cchhHHHHHHHHHHH--------HHHHHHhcccccc
Q 000166 296 ATKWSERKDAVAELTK-LASTKRIAPGDF-TEVCRTLKKLI---TDVNIAVAVEAIQAI--------GNLARGLRTHFSG 362 (1974)
Q Consensus 296 s~KWkeRkEALe~L~~-L~~~pKi~~~dy-~dL~~~Lkk~l---~DsNv~vv~~A~~~i--------~~LA~gLr~~F~~ 362 (1974)
.+.||-=++-+..+.. +...-....--| +-++..+..+| +|+-+.+.-..+... -..|.-|...+..
T Consensus 165 g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~ 244 (1048)
T KOG2011|consen 165 GPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDK 244 (1048)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3458888888888654 543222211111 12455555555 499998875544433 2333334333322
Q ss_pred chhhhHHHHHHHhccCCHH-HHHHHHHHHHHHHHhcCCChhhhHHHHHHHh-hc----CCchhHHHHHHHHHHHHhhCCh
Q 000166 363 SSRFLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSV-KN----KVPLVRSLTLNWVTFCIETSSK 436 (1974)
Q Consensus 363 y~~~~l~~lLeklKEKK~~-V~eA~~~aLda~~~~~~~~l~~~~e~i~~al-~~----KnP~vk~etl~~L~r~l~~~~~ 436 (1974)
-.+.+= +|+=|-+... =++.+...+.-.... ...++.++.+|.... =| =-|.+|..++..|.-|+...|.
T Consensus 245 tskQle---aEr~k~r~~rarle~Ll~~r~etqe~-~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~ 320 (1048)
T KOG2011|consen 245 TSKQLE---AERNKSRGNRARLESLLMLRKETQEQ-QDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPE 320 (1048)
T ss_pred HHHHHH---HHhcccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccH
Confidence 222210 0110000000 122222222222222 233455666665433 23 4499999999999999998876
Q ss_pred hHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000166 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1974)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1974)
.-++ ..++..+.=.|.|.+.+||..+..+|-.|.-. +..+..+...-..=|.+|.|+...
T Consensus 321 ~Fl~---dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~---~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 321 IFLS---DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK---DEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHhc---chHHHHhcceeecCccHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHHHHHHhh
Confidence 5442 55788899999999999999988887777655 445555555555556788888743
No 182
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.05 E-value=2e+02 Score=41.02 Aligned_cols=66 Identities=21% Similarity=0.113 Sum_probs=51.2
Q ss_pred CCcchHHHHHHHHHHHhccCCCCc-chhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHH
Q 000166 985 LGAEGRKDLFDWLSKQLTGLSGFP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1974)
Q Consensus 985 ~~p~~R~e~l~wL~~~l~~~~~~~-~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~ 1050 (1974)
+||..|..+|.-..+-+.....+. -....+.-++.+|+||+.-||++|-.++..++.+-.+-....
T Consensus 371 vsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~ 437 (1251)
T KOG0414|consen 371 VSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELR 437 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 478899999998876554443333 345566678899999999999999999999998888776654
No 183
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=38.75 E-value=3.8e+02 Score=34.25 Aligned_cols=133 Identities=13% Similarity=0.083 Sum_probs=94.8
Q ss_pred HhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhH-HHHHHHh------
Q 000166 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP-YVTTALT------ 981 (1974)
Q Consensus 909 k~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~-~i~~~L~------ 981 (1974)
++++...+.++..+..=-...+..++...+|.++..+-+.-+.+|+.|+..+..+...+|-+..+. .+.+.+.
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 567888899998888888888888888899999999999999999999999998877766433322 1222211
Q ss_pred --------------cccCCcchHHHHHHHHHHHhccC--CCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 982 --------------DAKLGAEGRKDLFDWLSKQLTGL--SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 982 --------------~~~~~p~~R~e~l~wL~~~l~~~--~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
..+.+.-.=-++|.++..-|... ......+.++...=.|.++.++.||..|..+=..++-
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11111112236777776666432 2234567778878889999999999999988777766
No 184
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.44 E-value=3.7e+02 Score=37.50 Aligned_cols=140 Identities=11% Similarity=0.142 Sum_probs=96.7
Q ss_pred hcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh
Q 000166 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (1974)
Q Consensus 334 l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~ 413 (1974)
+.|--+.+-.-|+..+..+++.=-+.=--.--.++...++-+||.-+-|-=.+...+-.++. +-.+++++++.+.-.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce---vy~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE---VYPEDILPDLSEEYL 812 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH---hcchhhHHHHHHHHH
Confidence 34999999999999999988752111111234678889999999999998777776666665 245788898887433
Q ss_pred ---cCC-chhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 414 ---NKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 414 ---~Kn-P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
+|+ |.-|.-.=.-+.+.+.....-. .+....++..++++++|++..-|-.++..+|-++.+..
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~-~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELV-FKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHH-HHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 222 2323222233334444333222 24446788899999999999999999999999998765
No 185
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.95 E-value=2.5e+02 Score=42.06 Aligned_cols=150 Identities=20% Similarity=0.125 Sum_probs=103.3
Q ss_pred HHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHH---HHHHHHHHHHHh----c
Q 000166 326 VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE---SLTQTLQAMHKA----G 397 (1974)
Q Consensus 326 L~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~e---A~~~aLda~~~~----~ 397 (1974)
+...|-.++. =....+-.+...||..+-.+ |..|..|...- ..-+.+||.++.-.. ++..|+-.+... -
T Consensus 52 ~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~--~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~ 128 (2067)
T KOG1822|consen 52 LEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLN--SCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMI 128 (2067)
T ss_pred HHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHH--HhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhh
Confidence 4444555554 45555668888999999888 88898886544 777777787443222 334444444432 1
Q ss_pred CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH-HhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q 000166 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1974)
Q Consensus 398 ~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~-~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~ 476 (1974)
..++++.+.-+...++.-...+|.+.+.-+......+.... ....++.+......++.|++--||-+|..|+..+..+-
T Consensus 129 ~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~ 208 (2067)
T KOG1822|consen 129 GRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLG 208 (2067)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhc
Confidence 13456666656666677778899998888888877654222 12456888888889999999999999999999999886
Q ss_pred Ch
Q 000166 477 GM 478 (1974)
Q Consensus 477 Ge 478 (1974)
|.
T Consensus 209 ~~ 210 (2067)
T KOG1822|consen 209 GP 210 (2067)
T ss_pred Cc
Confidence 64
No 186
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=37.35 E-value=3.7e+02 Score=37.34 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=96.8
Q ss_pred HHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHh--ccccccchh--hhHHHHHHHhccCCHHHH
Q 000166 309 LTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL--RTHFSGSSR--FLLPVLLEKLKEKKPTVA 383 (1974)
Q Consensus 309 L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gL--r~~F~~y~~--~~l~~lLeklKEKK~~V~ 383 (1974)
+..+..++--....+.+.+.-|.+++. ..+-- ..+.|+|.||+-- .-+|..... .++|-|-+.++..... =
T Consensus 474 IRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~-d 549 (708)
T PF05804_consen 474 IRNISQHDGPLKELFVDFIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE-D 549 (708)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC-h
Confidence 344655552122346677777777776 33544 5556666666543 235666653 6888888888766441 1
Q ss_pred HHHHHHHHHHHHhcCCC------h--hhhHHHHHHHhhcCC--chhHHHHHHHHHHHHhhCC-hhHHhHhhhhhHHHHHh
Q 000166 384 ESLTQTLQAMHKAGCLN------L--VDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICME 452 (1974)
Q Consensus 384 eA~~~aLda~~~~~~~~------l--~~~~e~i~~al~~Kn--P~vk~etl~~L~r~l~~~~-~~~~~~~~k~~~~~l~k 452 (1974)
+-+.+++-.+..- |.. + ..+++.+.+.|+.|. -.+=.+++-.+.+.+.+.. +..+.+. ..+...++.
T Consensus 550 Dl~LE~Vi~~gtl-a~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylid 627 (708)
T PF05804_consen 550 DLLLEVVILLGTL-ASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLID 627 (708)
T ss_pred HHHHHHHHHHHHH-HCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHH
Confidence 2233333222211 111 1 145667777777666 4455567766777765432 2222222 347788999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 453 CLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 453 ~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
++.|++++||+-|-.||..++-+=.
T Consensus 628 L~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 628 LMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 9999999999999999999886643
No 187
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.16 E-value=5.5e+02 Score=35.22 Aligned_cols=372 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred chHHHHhhhccchhHhHHHHHHHHHHHHHHh-cChhHHhhhhhhhHHHHHHh---ccCchhHHHHHHHHH--------HH
Q 000166 895 ELFGGLRGRLYDSNKNLVMATLITLGAVASA-MGPAVEKSSKGVLSDILKCL---GDNKKHMRECTLTVL--------DA 962 (1974)
Q Consensus 895 eL~~aLk~Rl~DsNk~lv~~al~ii~~lA~a-mG~~~~k~~k~l~~~il~~l---~D~K~~vR~aa~~al--------da 962 (1974)
|+...|+.++..-++.+-..++..+...+.+ || .+...+.-+.... ++.+.--.+.+.+.+ ..
T Consensus 190 ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr-----~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~~~~e~~iF~ 264 (620)
T PRK14954 190 EIQSQLQMICRAEGIQIDADALQLIARKAQGSMR-----DAQSILDQVIAFSVGSEAEKVIAYQGVAELLNYIDDEQFFD 264 (620)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-----HHHHHHHHHHHhccccccCCccCHHHHHHHHcCCCHHHHHH
Q ss_pred HHHhccchhhhH--HHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHH
Q 000166 963 WLAAVHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1974)
Q Consensus 963 ~~~~~gl~~~~~--~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1974)
+.+.++-...-. .+...|...+..|. .+|..|.+++ .++..+-...-..+.+....|.+...+ ..
T Consensus 265 L~dai~~~d~~~al~~l~~Ll~~ge~p~---~iL~lL~~~f------RdLL~vK~~~~~~l~~~~~~v~~~l~~----qA 331 (620)
T PRK14954 265 VTDAIAENDAVKMLEVARFVIDNGYDEQ---DFLEKLIEHF------RNFLVLYNLRSTRLIERPESVKERYQQ----SA 331 (620)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHH---HHHHHHHHHH------HHHHHHHhccccccccCCHHHHHHHHH----HH
Q ss_pred HhcCHHHHHHHhhccCchhH-------------HHHHHHHHhccCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000166 1041 RAGGQETIEKNLKDIQGPAL-------------ALILERIKLNGASQ-VSMGPTSKSSSKVPKSASNGVSKHGNRAISSR 1106 (1974)
Q Consensus 1041 ~~~G~~~~~~~~~~Lk~~~~-------------~~i~~~l~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1974)
+..+.+.+.+.+..+-.... -.+....+-..+.. ..+.|..+++.+........+...+......+
T Consensus 332 ~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (620)
T PRK14954 332 GGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKP 411 (620)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhccCcccccCCCCCCCccccCCCCCCCCcccccccCCCCc
Q ss_pred cCCC----CCCCCCccccchhhhhhhhhhcccCCCChH-------HHHhhhhccccccCCChhHHHHHHHHHHHhhhHHH
Q 000166 1107 VIPT----KGARPESIMSVQDFAVQSQALLNVKDSNKE-------DRERMVVRRFKFEDPRIEQIQELENDMMKYFREDL 1175 (1974)
Q Consensus 1107 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~-------~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l 1175 (1974)
-.++ +...|++...+........+......+... .......-+|+-.-+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 472 (620)
T PRK14954 412 EAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMN------------------- 472 (620)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCcccccHhhhhhccc-------------------
Q ss_pred HHhhcc--cCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHH--HHHhccccchHHHHHHhhhhHHHHHHHHhcC-----
Q 000166 1176 HRRLLS--TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRW--FVLQFCKSNTTCLLKVLEFLPELFDTLRDEG----- 1246 (1974)
Q Consensus 1176 ~~~Lf~--~Dfk~~l~al~~l~~~l~~~~~~~i~~lDlllkw--~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~----- 1246 (1974)
|+ ..++.+.+..+. ........+.....-+|...| ++-++...|-.+|--.|..++ +...+
T Consensus 473 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~ 542 (620)
T PRK14954 473 ----FTRNGSRKQPVQASSS-DAAQTGVFEGVAELEKLRMEWNQFLEHLLKKGQKVLVTHLRSCE-----LTSCSPHGVV 542 (620)
T ss_pred ----ccccchhccchhhccc-CcccCCCCCCcccHHHHHHHHHHHHHHHHHccchHHHHHHhcCc-----ccccCCCCeE
Q ss_pred ---------CcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHH
Q 000166 1247 ---------YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGF 1317 (1974)
Q Consensus 1247 ---------y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~ 1317 (1974)
|.+--.|+ .+|+.+..-+-.--=.+|-++-+=-......|..--.|++|.+ ||.. |.+
T Consensus 543 ~~~~~~~~~~e~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~q~l~~----~n~~--------~~~ 609 (620)
T PRK14954 543 VMTCCRKFSYEELMQDA-ALLSKEIESFYGIPLKLQIRYDAARDACTREKSIFTLFRELSE----TNDV--------VKY 609 (620)
T ss_pred EEEecccccHHHHHhHH-HHHHHHHHHHhcCCceEEEEEehhhhhhhccCCHHHHHHHHHh----hCcH--------HHH
Q ss_pred HHHhhcCcc
Q 000166 1318 LIDHHGAEI 1326 (1974)
Q Consensus 1318 li~~~G~~v 1326 (1974)
|+++||..+
T Consensus 610 l~~~f~~~l 618 (620)
T PRK14954 610 LIKEFGGEL 618 (620)
T ss_pred HHHHhCCee
No 188
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=37.07 E-value=5.5e+02 Score=35.45 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=21.1
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 000166 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMH 394 (1974)
Q Consensus 365 ~~~l~~lLeklKEKK~~V~eA~~~aLda~~ 394 (1974)
+.=+-.+|+.|++.+...++-..+.+|..-
T Consensus 334 r~gL~~~l~~l~~i~n~~ldvqlkvfdE~~ 363 (1102)
T KOG1924|consen 334 RDGLHKYLPDLTEINNDILDVQLKVFDEHK 363 (1102)
T ss_pred HHhHHHHHHHhhhhccHHHHHHHHHHhhhh
Confidence 344567888899998888877666666543
No 189
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.92 E-value=1.3e+03 Score=31.85 Aligned_cols=249 Identities=18% Similarity=0.177 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhhCCCccChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhc
Q 000166 148 AIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV 227 (1974)
Q Consensus 148 ai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~ 227 (1974)
+..++-.+.+.+ ...+++..-...+--++++++=+|-.++..|+..|.++.-+. -+..+ |-++++|.--.-..
T Consensus 168 aALclL~L~r~s-pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~~~-----~~avs~L~riv~~~ 240 (938)
T KOG1077|consen 168 AALCLLRLFRKS-PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES-YKTCL-----PLAVSRLSRIVVVV 240 (938)
T ss_pred HHHHHHHHHhcC-ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH-HhhhH-----HHHHHHHHHHHhhc
Confidence 334444445553 245676677777778888888888888888888888887643 44443 23445554332221
Q ss_pred C---------CCCCC---cchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhc
Q 000166 228 S---------GTARP---TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK 295 (1974)
Q Consensus 228 ~---------~~~~P---~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~ 295 (1974)
. +-+.| +..+|--|-- ... .+ +..-.--.+.++ .||.|.- +-..
T Consensus 241 ~t~~qdYTyy~vP~PWL~vKl~rlLq~~--------p~~-~D--------~~~r~~l~evl~--~iLnk~~-----~~~~ 296 (938)
T KOG1077|consen 241 GTSLQDYTYYFVPAPWLQVKLLRLLQIY--------PTP-ED--------PSTRARLNEVLE--RILNKAQ-----EPPK 296 (938)
T ss_pred ccchhhceeecCCChHHHHHHHHHHHhC--------CCC-CC--------chHHHHHHHHHH--HHHhccc-----cCcc
Confidence 1 00112 1122322210 000 00 000000011111 2343332 1236
Q ss_pred cCChHHHHHHHHHH---HHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc-hhhhHHHH
Q 000166 296 ATKWSERKDAVAEL---TKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVL 371 (1974)
Q Consensus 296 s~KWkeRkEALe~L---~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y-~~~~l~~l 371 (1974)
++|-+++-.-=.-| ..++.+---++.-|..-|..|.+.|++--.|+--+|++.+..||.. .|..- ++--...+
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~I 373 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTI 373 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHH
Confidence 77777775432222 2333222222334778888999999988888899999999999876 44422 45557788
Q ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 372 LEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 372 LeklK-EKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
+.-|| |+--+||.-+.+-|-++++. .+-.+++++++.++.+.-+++|+|...=++=.-+
T Consensus 374 i~sLkterDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 374 INSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHhccccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 99999 99999999888888888875 5678899999999999999999998766553333
No 190
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=36.38 E-value=2.1e+02 Score=30.04 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=47.9
Q ss_pred CCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000166 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1974)
Q Consensus 415 KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1974)
+...-|..++.=+.+.++.. ...+....-.++..+-.+++.. ++|+.|++|-..+++.++++.+.++++.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~-~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~ 96 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLG-GSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQ 96 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 33466777777777777632 2333222233444444555554 9999999999999999999999888874
No 191
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=35.96 E-value=5.1e+02 Score=35.99 Aligned_cols=136 Identities=14% Similarity=0.144 Sum_probs=91.0
Q ss_pred CCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc--
Q 000166 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-- 397 (1974)
Q Consensus 320 ~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~-- 397 (1974)
..+|....+-++..+.. .-++...++..+-.||.--+-...-.-+.+++.+++.|......+.-.+...|.-+.-+.
T Consensus 245 ~~~~~~~~kk~~~l~~k-QeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN 323 (708)
T PF05804_consen 245 KKDYEKELKKLQTLIRK-QEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN 323 (708)
T ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45676666666666654 344555788999999998887777778899999999998877666665666665553210
Q ss_pred --CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhh-hhHHHHHhhhCCCC
Q 000166 398 --CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLNDGT 458 (1974)
Q Consensus 398 --~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k-~~~~~l~k~l~Ds~ 458 (1974)
.+.=..+++.+...++.+|+.+...++..|.. |+..+ ..-..+++ .++|.++..|.|.+
T Consensus 324 K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~N-LSfd~-~~R~~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 324 KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFN-LSFDP-ELRSQMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH-hCcCH-HHHHHHHHCCCcHHHHHHhCCCc
Confidence 01112467788888999999888888877663 33221 11123333 38899999998753
No 192
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=35.59 E-value=1.3e+02 Score=29.07 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=61.4
Q ss_pred HHHHHHHhcChhHHhhhhhh--hHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHH
Q 000166 918 TLGAVASAMGPAVEKSSKGV--LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD 995 (1974)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l--~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~ 995 (1974)
++..++.-+|+.+++.+..+ -...+..+....+..++.+.+.|..|....|-..-+..+..+|..- +|.++..
T Consensus 3 l~~~l~~~~~~~Wk~La~~Lg~~~~~i~~i~~~~~~~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~-----~~~d~~~ 77 (83)
T PF00531_consen 3 LFDLLAEDLGSDWKRLARKLGLSESEIENIEEENPDLREQTYEMLQRWRQREGPNATVDQLIQALRDI-----GRNDLAE 77 (83)
T ss_dssp HHHHHHHSHSTCHHHHHHHTTS-HHHHHHHHHHSTSHHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHT-----THHHHHH
T ss_pred HHHHHhhcchhhHHHHHHHhCcCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHC-----CcHHHHH
Confidence 44556788888888876654 3666788877766699999999999999988888889999999854 5888888
Q ss_pred HHHHH
Q 000166 996 WLSKQ 1000 (1974)
Q Consensus 996 wL~~~ 1000 (1974)
.|.+.
T Consensus 78 ~i~~~ 82 (83)
T PF00531_consen 78 KIEQM 82 (83)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 77654
No 193
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=35.51 E-value=2.4e+02 Score=30.43 Aligned_cols=80 Identities=11% Similarity=0.176 Sum_probs=58.2
Q ss_pred cccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHHHhccCchhHHHHHHHHH
Q 000166 884 ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVL 960 (1974)
Q Consensus 884 ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~~l~D~K~~vR~aa~~al 960 (1974)
+-.+++.+. .+|++.|.+.| +..+...++.|++=||.++... |..++.+. ..=.-|.+.+.+..+.||-.|+.|+
T Consensus 33 Na~kf~~~~-~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 33 NADKFEENN-FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HSGGGSSGG-GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHcc-cHHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 346778887 89999999999 5557777888999999999887 22222221 2335677888889999999999998
Q ss_pred HHHHH
Q 000166 961 DAWLA 965 (1974)
Q Consensus 961 da~~~ 965 (1974)
-.++.
T Consensus 111 Qklm~ 115 (119)
T PF11698_consen 111 QKLMV 115 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 194
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=35.49 E-value=60 Score=34.83 Aligned_cols=62 Identities=13% Similarity=0.217 Sum_probs=37.4
Q ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHHHhc--cCcc---chHhHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 000166 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFG--VSHL---KLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1974)
Q Consensus 721 ~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG--~~~l---~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~l 786 (1974)
.|+..+....+|.+++-+|.=|++.++.+- ..++ ..|..|- .+ +.|.|+.||-.|+.++..+
T Consensus 47 ~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM---~L-m~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 47 KLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVM---EL-MNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHH---HH-TS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHH---HH-hcCCCHHHHHHHHHHHHHH
Confidence 334443334477777777777777776442 2211 2344443 35 8999999999998877554
No 195
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.29 E-value=1.3e+03 Score=31.45 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=9.7
Q ss_pred HHHHHhccCccch
Q 000166 744 SAVEDFGVSHLKL 756 (1974)
Q Consensus 744 ~ai~eFG~~~l~~ 756 (1974)
.+++-||..+|.+
T Consensus 568 ~a~~if~~~~~~~ 580 (585)
T PRK14950 568 AAQNIFDAQIISV 580 (585)
T ss_pred HHHHHcCCeEEee
Confidence 4677889887765
No 196
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=35.10 E-value=1.6e+02 Score=37.54 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=40.1
Q ss_pred HHHHHh-cccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHH
Q 000166 976 VTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1974)
Q Consensus 976 i~~~L~-~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~ 1035 (1974)
|..-|. +.+..|-+|.+.+.++.. |.+.-+...+..+++.++.||.+.+.-|+.-|.-+
T Consensus 310 v~peL~~~~~~~piLka~aik~~~~-Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 310 VLPELQPDVNSHPILKADAIKFLYT-FRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp TCHHHH-SS-S-HHHHHHHHHHHHH-HGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred hHHHhcccCCCCcchHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 344444 334578899999999885 44443345567777889999999999999966654
No 197
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.97 E-value=4.7e+02 Score=38.52 Aligned_cols=213 Identities=15% Similarity=0.171 Sum_probs=138.1
Q ss_pred HhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhh-HhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCC
Q 000166 1169 KYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-EVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247 (1974)
Q Consensus 1169 ~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i-~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y 1247 (1974)
-.+-+.|...|.+.+-..+++|+..+-..+.+...-+- .+-|+...|+ =||+|--+.|-++|++...+.+-.
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl-~r~~D~~~~vR~~~v~~~~~~l~~------ 330 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFL-GRFNDISVEVRMECVESIKQCLLN------ 330 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHH-HHhccCChhhhhhHHHHhHHHHhc------
Confidence 34667788888888888899999887776654332222 2556655663 599999999999999999977655
Q ss_pred cccHhHHhhhhhHHHHhhcCChHHHHHHHHHH---HHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHh-h-
Q 000166 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMREL---TKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH-H- 1322 (1974)
Q Consensus 1248 ~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i---~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~-~- 1322 (1974)
+=+-.++...+-+|-+..=|..+.+|..|-.. ...+...|.+- ++.++.|=++-|-+++|.+|+.-|.++.++ |
T Consensus 331 ~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~ 409 (1266)
T KOG1525|consen 331 NPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYC 409 (1266)
T ss_pred CchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22446777777777777778887777643221 23455566666 889999999999999999999999999986 2
Q ss_pred ----cCccccccch--HHHHHHHhccCChhHHHHHHHHHHHHHHHhc-----h---hHHHHhccCCHHHHhhHHHHHHHh
Q 000166 1323 ----GAEISGQLKS--LQIVASLTAERDGEIRKAALNTLATGYKILG-----E---DIWRYVGKLTDAQKSMLDDRFKWK 1388 (1974)
Q Consensus 1323 ----G~~v~~~~Ka--l~~iA~~i~drD~~VR~AALn~l~~~Y~~~G-----d---~v~k~vg~ls~k~~smLeer~kr~ 1388 (1974)
|-....+.-. -..+=.++-+.|=.-| +=+-++-.-|.+== + .+|..++.+...-..-+++.++|.
T Consensus 410 ~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r-~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 410 LRSAGGKEITPPFSWIPDKLLHLYYENDLDDR-LLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred hhccCcccccccccccchhHHhhHhhccccHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 2222111111 1222233333333334 22222222222211 1 255677788888888888888877
Q ss_pred HH
Q 000166 1389 VR 1390 (1974)
Q Consensus 1389 ~k 1390 (1974)
.+
T Consensus 489 ~~ 490 (1266)
T KOG1525|consen 489 SR 490 (1266)
T ss_pred HH
Confidence 65
No 198
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.93 E-value=9.5e+02 Score=29.73 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=91.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc-CCCCC----CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHH--Hhccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAP----GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFS 361 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~-pKi~~----~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~--gLr~~F~ 361 (1974)
-|..-+....|....-++.-|..++.. ++-.. +.+..+++.|+..+...+..++..|++|++.|.+ ..|.-|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 477778889999999999999887653 33222 3456667777776666777888999999999974 3344453
Q ss_pred cchhhhHHHHHHHh----ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000166 362 GSSRFLLPVLLEKL----KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1974)
Q Consensus 362 ~y~~~~l~~lLekl----KEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1974)
. ...++.++.-+ +.++....+-.=+++-.++.- |+ -+++...|.+++ ...-|.+.+....+.
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL---SF---~~~~~~~~~~~~------~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL---SF---EPEIAEELNKKY------LIPLLADILKDSIKE 254 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHHHH---TT---SHHHHHHHHTTS------HHHHHHHHHHH--SH
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH---hc---CHHHHHHHhccc------hHHHHHHHHHhcccc
Confidence 3 55666666666 345555566666666665542 33 345666666666 455777777766653
Q ss_pred HHhHhhhhhHHHHHhhhCCCCHH
Q 000166 438 AVLKVHKDYVPICMECLNDGTPE 460 (1974)
Q Consensus 438 ~~~~~~k~~~~~l~k~l~Ds~~~ 460 (1974)
|+.+-++.++..+++-....
T Consensus 255 ---KvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 255 ---KVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp ---HHHHHHHHHHHHTTSSSSTT
T ss_pred ---hHHHHHHHHHHHHHhccHHH
Confidence 44566677777777666554
No 199
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=34.67 E-value=1.2e+02 Score=35.36 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=58.1
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000166 410 TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1974)
Q Consensus 410 ~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1974)
.+|.-+.-..-.+++..++..++...... .+++..++..+.+.-++.+-+.|+.+-.|+|+.++.+|.+.+...+.
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~-~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERS-SPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 44555666677788888888887654332 23457777888888899999999999999999999999887765543
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.64 E-value=1.2e+02 Score=42.57 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=45.6
Q ss_pred HHhhc-CCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q 000166 410 TSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1974)
Q Consensus 410 ~al~~-KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~ 476 (1974)
+.|+. ..|.+|+=++..|.|..++...+-....-..-...++..|.|+-|+||.||.-|||+|+...
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 44444 35777765555555555655544333222233456889999999999999999999999874
No 201
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=34.63 E-value=2.6e+02 Score=35.00 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=53.6
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHH---hHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 414 NKVPLVRSLTLNWVTFCIETSSKAAV---LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~~~~~~---~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
+..|..|.+-..+|..+...+....+ ....+.++..++-++.++..+|-+.|..++..++.-+..
T Consensus 131 ~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999887654332 134578899999999999999999999999999877664
No 202
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=34.38 E-value=6.6e+02 Score=33.78 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=114.8
Q ss_pred CChhHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhccccccc---hhhhHHHHHHHhccCCHHHHHHHHHHHHHH
Q 000166 321 GDFTEVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTHFSGS---SRFLLPVLLEKLKEKKPTVAESLTQTLQAM 393 (1974)
Q Consensus 321 ~dy~dL~~~Lkk~l~----DsNv~vv~~A~~~i~~LA~gLr~~F~~y---~~~~l~~lLeklKEKK~~V~eA~~~aLda~ 393 (1974)
.=||.+++.|+.+.+ +.-.+--+..-+=...++.=-|+.|.-| -...+.-+++...|||+.|-..+.+.|+.+
T Consensus 233 sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn~~Tl~kil~~~pekk~~I~~~l~~~I~~v 312 (652)
T KOG2050|consen 233 SLRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSNDKTLDKILAEAPEKKASILRHLKAIITPV 312 (652)
T ss_pred HHhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccCcccHHHHHHhChHhHHHHHHHHHHHhHHH
Confidence 348888888888432 3223333344555555666566665433 345678899999999999999999999999
Q ss_pred HHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC--ChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000166 394 HKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS--SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1974)
Q Consensus 394 ~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~--~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1974)
+..+.+.+.-+.--+++++.+-++.-+.|.+..+...+... ++ +=....++|+--.++-=|+.-..+|-.
T Consensus 313 ~eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~--------dGS~vAm~li~~a~aKeRK~IiK~~K~ 384 (652)
T KOG2050|consen 313 AEKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTR--------DGSRVAMKLIWHATAKERKLIIKNMKE 384 (652)
T ss_pred hhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC--------chHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 99866665555566779999999999999999888776532 11 112345667777777777776665544
Q ss_pred H-----HHHhChhHHHHHhhcCCHHHHH
Q 000166 472 I-----AKSVGMRPLERSIEKLDDVRRN 494 (1974)
Q Consensus 472 l-----mk~~Ge~~l~~~l~~Ld~~kk~ 494 (1974)
. +-..|-..+...++-+||.++.
T Consensus 385 h~~K~A~~~yGh~vlia~ldc~DDT~l~ 412 (652)
T KOG2050|consen 385 HVEKIANDEYGHLVLIALLDCTDDTKLL 412 (652)
T ss_pred HHHHHHhhccCceehhhhhcccchHHHH
Confidence 3 3346777788888999886643
No 203
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=33.33 E-value=95 Score=37.98 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=61.3
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH---HHHHhhcCCH
Q 000166 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP---LERSIEKLDD 490 (1974)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~---l~~~l~~Ld~ 490 (1974)
..++.++.-.+.|+.. .......+.+...-++|.++..++|.++++|-.|+.+|..|+..+.... +. -.++++
T Consensus 90 K~~~~~~~~~l~w~v~--~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~--~tGl~~ 165 (282)
T PF10521_consen 90 KSNPGLASHVLSWIVL--SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILR--RTGLFS 165 (282)
T ss_pred ccCCcccHHHHHHHHH--hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHH--HcChHH
Confidence 4556777788888776 2444455556667799999999999999999999999999999988765 21 135555
Q ss_pred HHHHHHHHHHh
Q 000166 491 VRRNKLSEMIA 501 (1974)
Q Consensus 491 ~kk~KI~e~~~ 501 (1974)
.=...+..++-
T Consensus 166 v~~~al~~~L~ 176 (282)
T PF10521_consen 166 VFEDALFPCLY 176 (282)
T ss_pred HHHHHHHHHhh
Confidence 55555555543
No 204
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.36 E-value=8.8e+02 Score=33.37 Aligned_cols=199 Identities=14% Similarity=0.205 Sum_probs=116.4
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcC---CCCCCcchhhhHHhHHhhhhhcc
Q 000166 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVS---GTARPTRKIRAEQDKELGQELIS 251 (1974)
Q Consensus 175 ~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~---~~~~P~R~~Rs~q~~~~~~~a~~ 251 (1974)
..+..+|-+||..|..|++++|--.||++-+.. +-..+|++|+-+. ..+-|. +||..-+
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~--------mD~i~~kQf~~l~~LL~d~~p~--VRS~a~~-------- 242 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEE--------MDSIIQKQFEELYSLLEDPYPM--VRSTAIL-------- 242 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHH--------HHHHHHHHHHHHHHHhcCCCch--HHHHHHH--------
Confidence 346889999999999999999999999842222 2244555555431 233342 4554321
Q ss_pred cCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHH
Q 000166 252 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLK 331 (1974)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lk 331 (1974)
=+.|.. ..||+.|-+. - ..+|+.-+-
T Consensus 243 -----------------------------gv~k~~-s~fWe~iP~~-------i-----------------~~~ll~kI~ 268 (1005)
T KOG1949|consen 243 -----------------------------GVCKIT-SKFWEMIPPT-------I-----------------LIDLLKKIT 268 (1005)
T ss_pred -----------------------------HHHHHH-HHHHHHcCHH-------H-----------------HHHHHHHHH
Confidence 011222 4576655332 1 112222222
Q ss_pred HHhc-chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH----HhccCCHHHHHHHHHHHHHHHHhcCCChhhh--
Q 000166 332 KLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE----KLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-- 404 (1974)
Q Consensus 332 k~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLe----klKEKK~~V~eA~~~aLda~~~~~~~~l~~~-- 404 (1974)
.-+. |+-+-|-.-..++|..|+ |.|....++-.+|- -+-|+-..||-|..+-|--+-..-..++.++
T Consensus 269 d~~a~dt~s~VR~svf~gl~~~l------~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~ 342 (1005)
T KOG1949|consen 269 DELAFDTSSDVRCSVFKGLPMIL------DNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICP 342 (1005)
T ss_pred HHhhhccchheehhHhcCcHHHH------cCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 2233 666666666677777776 44555555444444 4568888999888888776654323445554
Q ss_pred HHHHHHHhhcCC-chhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCC
Q 000166 405 VEDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1974)
Q Consensus 405 ~e~i~~al~~Kn-P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1974)
+|+++.-|..-+ |--|..+...+.-||.-..+. ..+++-+...++-.
T Consensus 343 ~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e------e~~c~Rc~tlv~~n 390 (1005)
T KOG1949|consen 343 MDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE------EVWCERCVTLVQMN 390 (1005)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH------HHHHHHHHHHHccC
Confidence 477888887666 666766666667676544322 23566666666543
No 205
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=32.32 E-value=4.5e+02 Score=36.07 Aligned_cols=186 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhhcCCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-cccchhhh
Q 000166 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFL 367 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~-F~~y~~~~ 367 (1974)
|.+.|--+.=+++-+-++.|-+++ |.+... -+..+...|..-+ .|-++|-..+-|+-.|+.++-.. |.......
T Consensus 278 fLD~l~~kdn~qKs~Flk~Ls~~i--p~fp~rv~~~kiLP~L~~el--~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~ 353 (700)
T KOG2137|consen 278 FLDDLPQKDNSQKSSFLKGLSKLI--PTFPARVLFQKILPTLVAEL--VNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPA 353 (700)
T ss_pred hcccccccCcHHHHHHHHHHHHhh--ccCCHHHHHHhhhhHHHHHh--ccccccccccchhhhhhhccchhhhhhhhhHH
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~----l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~ 443 (1974)
+-+++..-.-|+..+. +.+=+|.+.+. ++ .+.|++-|..++++-..++...++.-+....+..+-....+.+
T Consensus 354 l~pi~~~~~~~~~~l~--i~e~mdlL~~K--t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~i 429 (700)
T KOG2137|consen 354 LKPIYSASDPKQALLF--ILENMDLLKEK--TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAI 429 (700)
T ss_pred HHHHhccCCcccchhh--HHhhHHHHHhh--CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHH
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHh
Q 000166 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485 (1974)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l 485 (1974)
-.-+..+ ++..++..|+-.+..|++.+++.+.--.+...+
T Consensus 430 lP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~ 469 (700)
T KOG2137|consen 430 LPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDEL 469 (700)
T ss_pred HHHhhcc--hhcccchHHHHHHHHHHHHHHHHHHHHHhHHHH
No 206
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=31.12 E-value=5.7e+02 Score=31.08 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=100.3
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccC--CHHHHHHHHHHHHHHHHh--cCCChh
Q 000166 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK--KPTVAESLTQTLQAMHKA--GCLNLV 402 (1974)
Q Consensus 327 ~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEK--K~~V~eA~~~aLda~~~~--~~~~l~ 402 (1974)
+..+...+.|.|..|-..|++++..++.. .+.....+.+++.+++...-. ...|..+...+|..+.-. +..-+.
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~ 133 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA 133 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH
Confidence 45677788899999999999999988754 334456777888888866554 567777777777666321 011144
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhh-hhHHHHHhhhCCC-CHHHHHHHHHHHHHHHHHhChh
Q 000166 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMR 479 (1974)
Q Consensus 403 ~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k-~~~~~l~k~l~Ds-~~~VR~aA~~~l~~lmk~~Ge~ 479 (1974)
..+.++..-+...+..+|.++++.|...=+ .+ .....++. ...+.++.+++.. +.++.-.+...+.-|-..++.+
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 566778888889999999999998774432 21 22222222 2456677777665 6777777777777776666644
No 207
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.79 E-value=1.5e+03 Score=30.57 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=110.7
Q ss_pred CcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc--CCC----ccchHHHHHHHHHHHHHHHHhcC
Q 000166 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML--PGW----SEKNVQVQQQVIEVINYLAATAT 675 (1974)
Q Consensus 602 ~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~--Pgw----kesNfqV~~k~leil~~la~~~~ 675 (1974)
+=.+|.+.+.+++=+.|-+|++.|. .|...+.++=+|... -|- .-.|++.+--.+.++..|..+-.
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~--------TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLE--------TDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc--------cCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 3456777777799999999999886 233444444444321 121 24789999999999999988633
Q ss_pred CCCccchhh----hccchhhccccch--------hhhHHHHHHHHHHHhhchHhH--HHH----HHHhhhhc-CChhhHH
Q 000166 676 KFPKKCVVL----CLLGISERVADIK--------TRAHAMKCLTTFSEAVGPGFI--FER----LYKIMKDH-KNPKVLS 736 (1974)
Q Consensus 676 ~fs~~~~~~----~l~~lveKlgD~K--------~r~~a~e~L~~~aE~~~p~~V--~~~----l~~~~~~~-KnPKv~a 736 (1974)
-|=..+.+. ++..+|.|--+.. +|+.|.+++..+|-.++-.|- ..+ +.+.+... |.+-.+=
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 455555555 4555666766655 899999999999887766543 223 33333333 3444455
Q ss_pred HHHHHHHHHHHHhccCcc------chHhHHHHHhhhcCCCc---cHHHHHHHHHHHHHHHhhhCchh
Q 000166 737 EGILWMVSAVEDFGVSHL------KLKDLIDFCKDTGLQSS---AAATRNATIKLLGALHKFVGPDI 794 (1974)
Q Consensus 737 e~l~wl~~ai~eFG~~~l------~~K~lI~~~k~~~L~~s---N~~VR~aAi~Ll~~ly~~~G~~l 794 (1974)
.|+. .|.+||-..+ +++....-++.. +... |...+..|-.+-+.|++..++-+
T Consensus 360 Gai~----gL~~lg~~~I~~~ilp~L~~~~~~l~~~-l~~~~~~n~~~i~ea~~v~~~llk~~~~ii 421 (576)
T KOG2549|consen 360 GAIA----GLSELGHEVIRTVILPNLKEYNERLQSV-LDVESLSNQLDIYEANKVYGALLKAENPII 421 (576)
T ss_pred hHHH----HHHHhhhhhhhheeccchHHHHHHhhhh-cccchhhhhhhhhhhhhHHHHHHHHhhHHH
Confidence 5553 4556665433 334444444443 4433 33346777777777777766533
No 208
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=30.78 E-value=59 Score=35.01 Aligned_cols=42 Identities=29% Similarity=0.230 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhhhhhccCCChhHHHHHHHHHHHhhChHHHhhcCCCCCCChhHHHHHHHHHHHH
Q 000166 1641 LVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKL 1705 (1974)
Q Consensus 1641 LvmKCLwKltK~l~~~i~~ld~d~iL~~Ih~Fl~~~p~~~wr~R~~~~D~PLRTvKTiLh~L~k~ 1705 (1974)
=||+-||... |.+ .-+||.++..- -|--.-||||+|..|||-
T Consensus 10 eVM~ilW~~~---~~t---------~~eI~~~l~~~-----------~ews~sTV~TLl~RL~KK 51 (123)
T COG3682 10 EVMEILWSRG---PAT---------VREIIEELPAD-----------REWSYSTVKTLLNRLVKK 51 (123)
T ss_pred HHHHHHHHcC---Ccc---------HHHHHHHHhhc-----------ccccHHHHHHHHHHHHhc
Confidence 4899999987 333 35778888772 144557999999999983
No 209
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.64 E-value=1.4e+02 Score=30.04 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=53.7
Q ss_pred HHHHHHHhcChhHHhhhhhhh--HHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhc
Q 000166 918 TLGAVASAMGPAVEKSSKGVL--SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 982 (1974)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~--~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~ 982 (1974)
-+..||..+|+.+++.++.|. ..-+..+......+++.+.+.|..|...-|-+.-++.+..+|..
T Consensus 9 ~l~~ia~~iG~~Wk~Lar~LGls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~ 75 (86)
T cd08318 9 QITVFANKLGEDWKTLAPHLEMKDKEIRAIESDSEDIKMQAKQLLVAWQDREGSQATPETLITALNA 75 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 355689999999999988654 45567777666789999999999999999988878888888874
No 210
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=30.53 E-value=5.5e+02 Score=33.32 Aligned_cols=178 Identities=13% Similarity=0.102 Sum_probs=110.8
Q ss_pred hhhhhccCChHHHHHHHHHHHHhh-hcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhcccccc-chhh
Q 000166 290 FWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSG-SSRF 366 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~-~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~~~ 366 (1974)
+.+.+.|.+=.||--..+-|..+- +.+...+.--..+...|-..+- +..-+.+...+++++.+.+|...+... |...
T Consensus 138 Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~f 217 (409)
T PF01603_consen 138 LLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQF 217 (409)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 445668999999987776677654 3333332222333444444444 788999999999999999997755433 2222
Q ss_pred hHHHHHHHhccCCHHH-HHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh
Q 000166 367 LLPVLLEKLKEKKPTV-AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1974)
Q Consensus 367 ~l~~lLeklKEKK~~V-~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1974)
+...++=-.|-+--.. -..+..|+..++.....-...++..++...-.-|++=..--++.+...++..++....++...
T Consensus 218 l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~ 297 (409)
T PF01603_consen 218 LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVP 297 (409)
T ss_dssp HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2222222233333333 467888888888763222334556666666666666666777888888888887777778888
Q ss_pred hHHHHHhhhCCCCHHHHHHHHH
Q 000166 446 YVPICMECLNDGTPEVRDAAFS 467 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~ 467 (1974)
+...+.+|++-..-.|-+.|..
T Consensus 298 lf~~la~ci~S~h~qVAErAl~ 319 (409)
T PF01603_consen 298 LFKRLAKCISSPHFQVAERALY 319 (409)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHG
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 8999999999999999888764
No 211
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.48 E-value=2.1e+02 Score=35.34 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=61.4
Q ss_pred cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh------------hHHHHHHHhhcCCchhHHHHHHHHHH
Q 000166 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------------VVEDVKTSVKNKVPLVRSLTLNWVTF 429 (1974)
Q Consensus 362 ~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~------------~~e~i~~al~~KnP~vk~etl~~L~r 429 (1974)
.|++.++ .+|.+. -.+..++..+...++-+... .-...+ ....+...+++..+.+...++..|+.
T Consensus 55 ~~~~~~l-~lL~~~-~~~~d~v~yvL~li~dll~~-~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 55 QYASLFL-NLLNKL-SSNDDTVQYVLTLIDDLLSD-DPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp --------HHHHHH----HHHHHHHHHHHHHHHH--SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHc-cCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3444444 455555 55556666666666665553 112111 33445557778889999999999999
Q ss_pred HHhhCChhHHh---HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 430 CIETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 430 ~l~~~~~~~~~---~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
.+...+..... ..+..++..+...++.++.++...|..+|+.+++.=.+|.+
T Consensus 132 Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~ 186 (312)
T PF03224_consen 132 LLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQV 186 (312)
T ss_dssp HHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHH
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHH
Confidence 99876543332 33344444555555557778889999999988876555543
No 212
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=29.35 E-value=1.9e+03 Score=31.33 Aligned_cols=331 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc--cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHH
Q 000166 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1974)
Q Consensus 867 WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl--~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~ 944 (1974)
||.--.-|.+.+..= +..+.-..++.+...++.++ .++=.-+. -++-.++..+.+.--.-.-....+.-.+-..
T Consensus 424 wk~qea~l~a~~~~~---~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~-Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l 499 (1005)
T KOG2274|consen 424 WKIQEALLVAAESVR---IDDANDDKLIELTIMIDNGLVYQESPFLLL-RAFLTISKFSSSTVINPQLLQHFLNATVNAL 499 (1005)
T ss_pred HHHHHHHHHHHhhcc---cCcchHHHHHHHHHHHHhhcccccCHHHHH-HHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Q ss_pred hccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhc----------------------
Q 000166 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT---------------------- 1002 (1974)
Q Consensus 945 l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~---------------------- 1002 (1974)
..|.++.+|=+|..+...|+...-+-+++|+|.+.|. -.-|.-..|++.-|.+.|.
T Consensus 500 ~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~--qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i 577 (1005)
T KOG2274|consen 500 TMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLL--QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTI 577 (1005)
T ss_pred ccCCCCchhHHHHHHHHhccCceeccccchHHHHHHH--HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHH
Q ss_pred ----cCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCC
Q 000166 1003 ----GLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMG 1078 (1974)
Q Consensus 1003 ----~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~~~~~~~ 1078 (1974)
...+.|.......=++.-|.+...-----.+.++|+++.+++...=... ..+-....+.+--.+++..+
T Consensus 578 ~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~-~~l~~~aidvLttvvr~tp~------ 650 (1005)
T KOG2274|consen 578 NLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAP-AGLCAIAIDVLTTVLRNTPS------ 650 (1005)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccC-chhhHHHHHHHHHHHhcCCC------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChh
Q 000166 1079 PTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIE 1158 (1974)
Q Consensus 1079 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e 1158 (1974)
.
T Consensus 651 -------------------------------------------------------------------------------p 651 (1005)
T KOG2274|consen 651 -------------------------------------------------------------------------------P 651 (1005)
T ss_pred -------------------------------------------------------------------------------C
Q ss_pred HHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhcccc---chHHHHHHhhhh
Q 000166 1159 QIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKS---NTTCLLKVLEFL 1235 (1974)
Q Consensus 1159 ~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dt---N~~vl~k~Le~l 1235 (1974)
....+ ...+|.+-..=-+|+.|+---..|=|-|...+....+.+.. | ++- |...+++++.
T Consensus 652 L~~~l---~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t-------~-----~~e~g~~~~yImqV~s-- 714 (1005)
T KOG2274|consen 652 LPNLL---ICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLT-------W-----HDEPGHNLWYIMQVLS-- 714 (1005)
T ss_pred ccHHH---HHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHh-------h-----ccCCCccHHHHHHHHH--
Q ss_pred HHHHHHHHhcCCcccHhHHhhhhhHHHHhhcC-ChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHH
Q 000166 1236 PELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314 (1974)
Q Consensus 1236 ~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd-~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~e 1314 (1974)
..|.-+.-.++-.=++-++-.|+.|.|- -.+.+-.-+|+++.++ |.+|||..
T Consensus 715 ----qLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrm-----------------------q~ae~lsv 767 (1005)
T KOG2274|consen 715 ----QLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRL-----------------------QQAETLSV 767 (1005)
T ss_pred ----HHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHH-----------------------HHhhhHHH
Q ss_pred HHHHHHhhcCccccccchH
Q 000166 1315 VGFLIDHHGAEISGQLKSL 1333 (1974)
Q Consensus 1315 l~~li~~~G~~v~~~~Kal 1333 (1974)
+-+||--|---+|.+.+.+
T Consensus 768 iQsLi~VfahL~~t~~~~~ 786 (1005)
T KOG2274|consen 768 IQSLIMVFAHLVHTDLDQL 786 (1005)
T ss_pred HHHHHHHHHHHhhCCHHHH
No 213
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=28.25 E-value=73 Score=35.88 Aligned_cols=90 Identities=13% Similarity=0.241 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHhhchhhhHHHHHHHHhhcc-----CchhHHHHHHHHHHHHH-hhCC-CccChhHHHhhchhhhcC
Q 000166 107 PKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNK-----VAKAVVPAIDVMFQALS-EFGA-KIIPPKRILKMLPELFDH 179 (1974)
Q Consensus 107 ~ktk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K-----~PKvvaaai~~l~~~l~-~FG~-kvv~~K~ilk~l~~lf~h 179 (1974)
...+.....-+-.|++.++.+..++.|.....+. ...+..+|+.|++.++. ..|. .++.-...+..+-..+..
T Consensus 90 v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 90 VSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred HHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 3344455566677777777777777665554443 34588999999988776 5777 456666778888888899
Q ss_pred CChhHHHHHHHHHHHHH
Q 000166 180 QDQNVRASSKGLTLELC 196 (1974)
Q Consensus 180 ~dk~VR~ea~~L~vely 196 (1974)
.+..+|..+..++..++
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998887764
No 214
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=27.73 E-value=3.6e+02 Score=35.94 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=82.7
Q ss_pred HHHHhc-ChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc--hhhhH--HHHHHHhcccCCcchHHHHHH
Q 000166 921 AVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFD 995 (1974)
Q Consensus 921 ~lA~am-G~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl--~~~~~--~i~~~L~~~~~~p~~R~e~l~ 995 (1974)
+||.|= ..++++....++|++|.+|+-.-..||..+++.|..+-..+.- +.-+| .+.+-.++++.++..|.=.+-
T Consensus 7 RlalAdtD~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsli 86 (501)
T PF13001_consen 7 RLALADTDEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLI 86 (501)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHH
Confidence 455565 6778899999999999999999999999999999998887753 23344 566666766667889999999
Q ss_pred HHHHHhccCCCCcchhhhhhhHhhhccCCChHHHH
Q 000166 996 WLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRK 1030 (1974)
Q Consensus 996 wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRk 1030 (1974)
||...+..... .+-..++..++.++..+..+-..
T Consensus 87 yi~~g~~Rl~~-~e~~~llP~ll~~is~~~~~~~~ 120 (501)
T PF13001_consen 87 YIEMGFDRLDD-EERRELLPSLLKGISKKPKQHQD 120 (501)
T ss_pred HHHHhhhcCCH-HHHHHHHHHHHHhhccCchhhhH
Confidence 99988877742 34455566688888766544443
No 215
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.66 E-value=1.8e+02 Score=38.23 Aligned_cols=145 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHH-----HHHhcccc-chHHHHHHhhh-hHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHH
Q 000166 1203 KDIIEVLDILLRW-----FVLQFCKS-NTTCLLKVLEF-LPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREK 1275 (1974)
Q Consensus 1203 ~~~i~~lDlllkw-----~tlr~~dt-N~~vl~k~Le~-l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~ 1275 (1974)
.++....|-++|| +.+-|+-| |-.+...+|.| +. |..|-||..
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avs------------------------------D~nDDVrRA 571 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVS------------------------------DGNDDVRRA 571 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecc------------------------------cCchHHHHH
Q ss_pred HHHHHHHHhhccCccchHHHHHhhh-ccCChhhHhHHHHHHHHHHHhhcCccccccchHHHHHHHhccCChhHHHHHHHH
Q 000166 1276 MRELTKQIVNFYSATKTLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNT 1354 (1974)
Q Consensus 1276 vr~i~~~~~~vyp~skvf~~l~~gl-ksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i~drD~~VR~AALn~ 1354 (1974)
+++-.=--.|-.--..+-.+|-| +|-|.-+|...--.||-.....|.++ |+..+-.+.-|.+.-||++|.-+
T Consensus 572 --AViAlGfvc~~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-----a~diL~~L~~D~~dfVRQ~AmIa 644 (926)
T COG5116 572 --AVIALGFVCCDDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-----ATDILEALMYDTNDFVRQSAMIA 644 (926)
T ss_pred --HHHheeeeEecCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-----HHHHHHHHhhCcHHHHHHHHHHH
Q ss_pred HHHHHHHhchhHHHHhccCCHHHHhhHHHH
Q 000166 1355 LATGYKILGEDIWRYVGKLTDAQKSMLDDR 1384 (1974)
Q Consensus 1355 l~~~Y~~~Gd~v~k~vg~ls~k~~smLeer 1384 (1974)
++-...-+-+++---+.++..+-.+.|.++
T Consensus 645 ~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 645 VGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHhhcCcccChhHHHHHHHHHHHHhhh
No 216
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=27.66 E-value=6.2e+02 Score=33.31 Aligned_cols=159 Identities=11% Similarity=0.196 Sum_probs=117.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhh-----h
Q 000166 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM-----K 727 (1974)
Q Consensus 653 kesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~-----~ 727 (1974)
+-++-......|+++.++.. .+.++..+...|+..|+.-.+-.++...+-+++..++......-++..++..+ .
T Consensus 187 ~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCcc
Confidence 44566777888888887776 57889999999998888887777889999999999998777677778888877 2
Q ss_pred hcCChhhHHHHHHHHHHHHHHh---ccCccchHh--HHHHHhhhcCCCccHHHHHHHHHHHHHHHhhh-CchhHhhhhcc
Q 000166 728 DHKNPKVLSEGILWMVSAVEDF---GVSHLKLKD--LIDFCKDTGLQSSAAATRNATIKLLGALHKFV-GPDIKGFLADV 801 (1974)
Q Consensus 728 ~~KnPKv~ae~l~wl~~ai~eF---G~~~l~~K~--lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~-G~~l~~~l~dl 801 (1974)
...++.+.-+++..+..++-.. |+..++..+ ++..+..+ +...++.|=.. ++..+++.+ |.--+.+.+.-
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~e---Il~~i~~ll~~~~~~~l~~~~ 341 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYE---ILLLINRLLDGKYGRELSEED 341 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHH---HHHHHHHHHhHhhhhhhcccC
Confidence 3467888999999999998866 444555666 99999987 99888876554 444555555 55555544333
Q ss_pred hHHHHHHHHHHHhcC
Q 000166 802 KPALLSALDAEYEKN 816 (1974)
Q Consensus 802 kpall~~Ie~EF~K~ 816 (1974)
=+.++..++.=+++.
T Consensus 342 W~~~~~i~~~~~~~~ 356 (464)
T PF11864_consen 342 WDIILDIIEEIFDKI 356 (464)
T ss_pred chHHHHHHHHHHhhc
Confidence 335566666666665
No 217
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=27.20 E-value=5.3e+02 Score=33.28 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=112.2
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhh---cCCCCCCChhHHHHH-------HHHHhcchhHHHHHHHHHHHHHHHHHhcc-
Q 000166 290 FWEGVKATKWSERKDAVAELTKLAS---TKRIAPGDFTEVCRT-------LKKLITDVNIAVAVEAIQAIGNLARGLRT- 358 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~---~pKi~~~dy~dL~~~-------Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~- 358 (1974)
..+..-++-|-+|..+|-.+.++.. ..|+ |.++... ++.-|.|--.-+.+..++.|..|-.-+=+
T Consensus 398 leaealcktppdqedallaaikkfgeePiaki----kedhfenlkagieeiReaIddisaekfqasfelikciiahlike 473 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEEPIAKI----KEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKE 473 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccCcccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 3445667889999999998776432 2333 4444444 34455566666777777777776666543
Q ss_pred -ccccc-----hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-CCChhhhHHHHHHHhh-cCCchhHHHHHHHHHHH
Q 000166 359 -HFSGS-----SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFC 430 (1974)
Q Consensus 359 -~F~~y-----~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~-~~~l~~~~e~i~~al~-~KnP~vk~etl~~L~r~ 430 (1974)
.|..| ..--++.++-+-+|--.-++.-+.+.+..++..- ..++.-+-+.+..+++ +|-|.+-..-..-|+|.
T Consensus 474 hkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarl 553 (666)
T KOG4825|consen 474 HKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARL 553 (666)
T ss_pred hhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHH
Confidence 37766 2334677788888877777777777777665541 1223333355556665 78899988888889999
Q ss_pred HhhCChhHHhHhhhh-hHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000166 431 IETSSKAAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 431 l~~~~~~~~~~~~k~-~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
++...+..- .++.. ....-+...+.+--++|++|+..+..+.+
T Consensus 554 lkdlgkGra-gfiediakkfgVpaeehglndkreaafaiicdmtr 597 (666)
T KOG4825|consen 554 LKDLGKGRA-GFIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTR 597 (666)
T ss_pred HHhcCCCcc-chhHHHHHHhCCCccccchhHHHHhHhhhhhhhcc
Confidence 876433211 01111 12223345666777899999877666554
No 218
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.08 E-value=1.2e+02 Score=35.64 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=81.1
Q ss_pred CccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHh
Q 000166 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1974)
Q Consensus 846 pRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~a 925 (1974)
...|+..-|+ .|.+.|.+.+.=.|-=|-+-+..+|-...++|-|-+ -.|+..||.-|.-.|+-+...+|++|+++...
T Consensus 108 e~Ldy~~yLp-~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~ 185 (262)
T KOG3961|consen 108 EKLDYCPYLP-LFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVS 185 (262)
T ss_pred HhccchHHHH-HHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 3456666554 588899999999999999999999987778999987 99999999999999999999999999998765
Q ss_pred ---cChhHHhhhhhhhHHHHHHhccC
Q 000166 926 ---MGPAVEKSSKGVLSDILKCLGDN 948 (1974)
Q Consensus 926 ---mG~~~~k~~k~l~~~il~~l~D~ 948 (1974)
.|+..-+|-|.++|. +..++.+
T Consensus 186 ~~~vG~aLVPfYRQlLp~-~n~~k~~ 210 (262)
T KOG3961|consen 186 VGCVGAALVPFYRQLLPV-LNTFKNS 210 (262)
T ss_pred ccccchhhhhHHHHhhhh-hhhhccc
Confidence 367777888888874 3444443
No 219
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=26.93 E-value=5.8e+02 Score=31.13 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=62.9
Q ss_pred HHHHHHhhccCccchH-------HHHHhhh-ccCChhhHhHHHHHHHHHHHhhcCccc--cccchHHHHHHHhccCChhH
Q 000166 1278 ELTKQIVNFYSATKTL-------PYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEIS--GQLKSLQIVASLTAERDGEI 1347 (1974)
Q Consensus 1278 ~i~~~~~~vyp~skvf-------~~l~~gl-ksKN~r~R~EcL~el~~li~~~G~~v~--~~~Kal~~iA~~i~drD~~V 1347 (1974)
.+++-+|+++|+||.+ ..+++-+ .+.....++.||+-|-+++-.+=.++. .....+..|+.++.++.. -
T Consensus 113 ~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~-~ 191 (257)
T PF08045_consen 113 RVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST-D 191 (257)
T ss_pred HHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc-c
Confidence 6889999999999974 4666777 556688899999999998876655542 334467889999976643 2
Q ss_pred HHHHHHHHHHHHHHhchh
Q 000166 1348 RKAALNTLATGYKILGED 1365 (1974)
Q Consensus 1348 R~AALn~l~~~Y~~~Gd~ 1365 (1974)
|+-=+-|+.-.|+|+++.
T Consensus 192 ~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 192 RELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HHHhHHHHHHHHHHHccc
Confidence 333366677677776654
No 220
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.68 E-value=1.2e+03 Score=28.31 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHhc-c------ccccchhhhHHH
Q 000166 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKL-ITDVNIAVAVEAIQAIGNLARGLR-T------HFSGSSRFLLPV 370 (1974)
Q Consensus 299 WkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~-l~DsNv~vv~~A~~~i~~LA~gLr-~------~F~~y~~~~l~~ 370 (1974)
=-+|.-.++.+..++..-++ +|++.+..+... -.+.+..|...++..+..+.+.|. . .|..|.+.++.+
T Consensus 35 ~~~R~~ll~D~~al~~~g~~---~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 111 (324)
T PF11838_consen 35 PLDRAQLLDDLFALARAGRL---SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEP 111 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTSS----HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45788888888888766443 588888888888 469999999999999999997777 1 277788899999
Q ss_pred HHHHhccCC
Q 000166 371 LLEKLKEKK 379 (1974)
Q Consensus 371 lLeklKEKK 379 (1974)
++++++=..
T Consensus 112 ~~~~l~~~~ 120 (324)
T PF11838_consen 112 LYERLGWDP 120 (324)
T ss_dssp HHHH--SSS
T ss_pred HHHHcCCCC
Confidence 999996554
No 221
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.67 E-value=2.3e+02 Score=38.92 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=42.6
Q ss_pred CchhHHHHHHHHHHHHHhhCCC-ccChhHHHhhchhhhcCCChhHHHHHHHHHHHHH
Q 000166 141 VAKAVVPAIDVMFQALSEFGAK-IIPPKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1974)
Q Consensus 141 ~PKvvaaai~~l~~~l~~FG~k-vv~~K~ilk~l~~lf~h~dk~VR~ea~~L~vely 196 (1974)
|+.|.++|+.++ ..||.. .....+|+-.|...+.++|-.||+.|.-.+..+-
T Consensus 479 n~ivRaaAv~al----aKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 479 NAIVRAAAVSAL----AKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhHHHHHHHH----HHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 568889998877 567763 4567788889999999999999999998887776
No 222
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=26.55 E-value=2.3e+02 Score=28.29 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=57.2
Q ss_pred HHHHHHHhcChhHHhhhhhhhH--HHHHHhc-cCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHH
Q 000166 918 TLGAVASAMGPAVEKSSKGVLS--DILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF 994 (1974)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~~--~il~~l~-D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l 994 (1974)
.+..||.-+|+...+.++.+-- .=+..+. |+...+.+.+.+.|..|...-|-..-+..+..+|..- +|.++.
T Consensus 6 ~l~~ia~~lG~dW~~LAr~Lg~~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i-----~r~Di~ 80 (84)
T cd08317 6 RLADISNLLGSDWPQLARELGVSETDIDLIKAENPNSLAQQAQAMLKLWLEREGKKATGNSLEKALKKI-----GRDDIV 80 (84)
T ss_pred hHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHc-----ChHHHH
Confidence 3567889999999998887642 2355555 5566789999999999999999777788899999843 577776
Q ss_pred HH
Q 000166 995 DW 996 (1974)
Q Consensus 995 ~w 996 (1974)
.-
T Consensus 81 ~~ 82 (84)
T cd08317 81 EK 82 (84)
T ss_pred HH
Confidence 53
No 223
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=26.39 E-value=3e+02 Score=34.79 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=38.7
Q ss_pred hHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCChhHHHHHHHHHHHHHH
Q 000166 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCR 197 (1974)
Q Consensus 128 ~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyr 197 (1974)
.+++-+-..++.+||+.-... .|....+-+ .+=.|.|.|+.|.|..||+++..++.+++-
T Consensus 208 ~fL~Ff~~ll~~~n~~~~~~~-~~~~~~~le---------~ip~WAP~LL~y~d~~VR~~Te~fL~~~lF 267 (337)
T PF12030_consen 208 AFLDFFRGLLNLRNERIGEDR-AWFLSLVLE---------RIPDWAPGLLGYPDRSVRNGTEDFLQELLF 267 (337)
T ss_pred hHHHHHHHHHhCcCccccccH-HHHHHHHHH---------cccccchHhhCCCchhHHHHHHHHHHHHhC
Confidence 455555556666777642222 222222211 223689999999999999999999988653
No 224
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=25.79 E-value=2e+02 Score=33.61 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHH
Q 000166 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRK 991 (1974)
Q Consensus 912 v~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~ 991 (1974)
-..++++++.+-..+|..+.++...++-.+-+.=.+..-..|.++-.|+.+.+.+.|.+.++..+.=-+.++......|.
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~~ra 96 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQPGRA 96 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCcccc
Confidence 34677888888888887765555444444443333444588999999999999999999998754433332222344565
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChH
Q 000166 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSD 1027 (1974)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~d 1027 (1974)
=+|--|.++..+. .-.-....+.|+...+..+..+
T Consensus 97 WLLPlLr~~i~~~-~L~fF~~~~lPla~~~~~~~~~ 131 (198)
T PF08161_consen 97 WLLPLLRDHIRNA-SLSFFVEEFLPLARRLRQKAQK 131 (198)
T ss_pred hhHHHHHHhccCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554332 1223455556655554444333
No 225
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=25.75 E-value=1.7e+02 Score=31.33 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=45.1
Q ss_pred hHhHHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000166 715 PGFIFERLYKIMKDHKN---PKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1974)
Q Consensus 715 p~~V~~~l~~~~~~~Kn---PKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll 783 (1974)
...|++.+...+..+.+ +.+...+|..+.+.+.-+....+.-.+++..+-.. | +++..|.+|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~-l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQL-L--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHH-T--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHH-c--CCHHHHHHHHHhC
Confidence 34455555555544443 89999999999999985555544445688888776 7 5666699988875
No 226
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=25.51 E-value=1.5e+02 Score=38.60 Aligned_cols=125 Identities=22% Similarity=0.168 Sum_probs=79.9
Q ss_pred HHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCC-hHHHHHHHHHHHHHHhhccCccchHHHHHhhh-ccCCh
Q 000166 1228 LLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHN-IEKVREKMRELTKQIVNFYSATKTLPYILEGL-RSKNN 1305 (1974)
Q Consensus 1228 l~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~-ke~vR~~vr~i~~~~~~vyp~skvf~~l~~gl-ksKN~ 1305 (1974)
|.--|++|...++.-...=-.|.+|.+...-..|----=|- -.=-|+.++.+-+.= -+++..|.+-+ +|.++
T Consensus 295 L~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~------~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 295 LTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKN------YELLKILIHLLETSVDP 368 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcc------hHHHHHHHHHHhcCCCc
Confidence 33445566655555555555577888887776664322232 122344444433221 12233333444 46778
Q ss_pred hhHhHHHHHHHHHHHhh--cCccccccchHHHHHHHhccCChhHHHHHHHHHHHH
Q 000166 1306 RTRIECVDLVGFLIDHH--GAEISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1358 (1974)
Q Consensus 1306 r~R~EcL~el~~li~~~--G~~v~~~~Kal~~iA~~i~drD~~VR~AALn~l~~~ 1358 (1974)
.+=+=++.-||.++..| |-.++...++=..|=.++++.|+.||.-||.|+...
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 88777778899999998 766665555557789999999999999999999844
No 227
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=25.50 E-value=1.5e+03 Score=28.78 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=79.2
Q ss_pred CChhHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC
Q 000166 321 GDFTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (1974)
Q Consensus 321 ~dy~dL~~~Lkk~l~Ds-Nv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~ 399 (1974)
.+--+++.++.+-+.+. |-.-..+.++++..|=+|+- +-..+|..+-..+-.++.. |-
T Consensus 80 e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d--------------------~~~~aR~~Vy~~lv~la~~-~~ 138 (378)
T KOG2753|consen 80 EKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVD--------------------KPTPARYQVYMSLVTLAAS-CK 138 (378)
T ss_pred HHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccC--------------------CCchHHHHHHHHHHHHHhh-cc
Confidence 34445555555555433 33334556666666655543 3333666666666666654 42
Q ss_pred Chhhh---HHHHHHHhhcCCchhHH--HHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000166 400 NLVDV---VEDVKTSVKNKVPLVRS--LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 400 ~l~~~---~e~i~~al~~KnP~vk~--etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
-++.+ ++-+-..++.=|+.++. +.+.++++.+....+... -.|.+...+..--+|-..+.|+.|.+|+.+..+
T Consensus 139 ~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~--s~kvmt~lLgtyt~dnas~AredA~rcV~~av~ 216 (378)
T KOG2753|consen 139 LIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDE--SSKVMTELLGTYTEDNASEAREDAMRCVVEAVK 216 (378)
T ss_pred eeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhh--HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHc
Confidence 22222 35566677777876654 788999999987654221 225555666666677789999999999887764
No 228
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=25.04 E-value=1.3e+02 Score=29.13 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=54.2
Q ss_pred HHHHHHhcChhHHhhhhhhh--HHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhc
Q 000166 919 LGAVASAMGPAVEKSSKGVL--SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 982 (1974)
Q Consensus 919 i~~lA~amG~~~~k~~k~l~--~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~ 982 (1974)
+..||..+|....+.++.+. ..-+..+..+.+.+++.+.+.|..|...-|-+.-++.+..+|..
T Consensus 2 ~~~ia~~lg~~W~~la~~Lgl~~~~I~~i~~~~~~~~~~~~~mL~~W~~~~~~~at~~~L~~aL~~ 67 (79)
T cd01670 2 LDKLAKKLGKDWKKLARKLGLSDGEIDQIEEDNPRVREQAYQLLLKWEEREGDNATVGNLIEALRE 67 (79)
T ss_pred HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHhCCCHHHHHHHHHHHHHhccCcCcHHHHHHHHHHH
Confidence 45788889998888877664 66688888888889999999999999999877778888888884
No 229
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=24.74 E-value=83 Score=33.09 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhhhhhhhhccCCChhHHHHHHHHHHHhhChHHHhhcCCCCCCChhHHHHHHHHHHHHhh
Q 000166 1639 SDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG 1707 (1974)
Q Consensus 1639 ~eLvmKCLwKltK~l~~~i~~ld~d~iL~~Ih~Fl~~~p~~~wr~R~~~~D~PLRTvKTiLh~L~k~~G 1707 (1974)
-.-||+|||+.-. + -..+||+-|..- .+...-||+|+|..|++ +|
T Consensus 5 E~~IM~~lW~~~~-~-----------t~~eI~~~l~~~-----------~~~~~sTv~t~L~rL~~-Kg 49 (115)
T PF03965_consen 5 ELEIMEILWESGE-A-----------TVREIHEALPEE-----------RSWAYSTVQTLLNRLVE-KG 49 (115)
T ss_dssp HHHHHHHHHHHSS-E-----------EHHHHHHHHCTT-----------SS--HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhCCC-C-----------CHHHHHHHHHhc-----------cccchhHHHHHHHHHHh-CC
Confidence 3469999998754 2 134566665441 23466899999999998 44
No 230
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=24.32 E-value=4.8e+02 Score=27.19 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=45.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHH
Q 000166 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1974)
Q Consensus 369 ~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1974)
..+|++|..-| +-....+.|..|+..+.-.-..+++-+...++...|.-|...+-.+...+.+........+...+.+
T Consensus 5 ~~~l~~L~~~~--~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~ 82 (114)
T cd03562 5 NALLEKLTFNK--NSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVP 82 (114)
T ss_pred HHHHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 44566666543 2333445555555432111235666666777777777776555555444554332211111122244
Q ss_pred HHHhhhCCCCHHHHHHH
Q 000166 449 ICMECLNDGTPEVRDAA 465 (1974)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA 465 (1974)
.+.......++.+|+.-
T Consensus 83 ~f~~~~~~~~~~~r~kl 99 (114)
T cd03562 83 LFLDAYEKVDEKTRKKL 99 (114)
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 44444444455555433
No 231
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.91 E-value=3.3e+02 Score=30.49 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHHHHhh--------hccchhHhHHHHHHHHHHHHHHhcChhHHhhhh
Q 000166 865 PDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRG--------RLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1974)
Q Consensus 865 ~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~aLk~--------Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k 935 (1974)
.+++.|.=|||-++.+++.+...+.... ..++...+|. -+...+..+...+++++..+...++...+.-.-
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999987655555221 1234444433 333445888899999999999999998888888
Q ss_pred hhhHHHHHHhccCch---hHHHHHHHHHHHHHHh
Q 000166 936 GVLSDILKCLGDNKK---HMRECTLTVLDAWLAA 966 (1974)
Q Consensus 936 ~l~~~il~~l~D~K~---~vR~aa~~alda~~~~ 966 (1974)
.++..++..+-+++. .-|..+++++..++..
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 899999885555443 5677788887777653
No 232
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=23.71 E-value=3.7e+02 Score=32.78 Aligned_cols=84 Identities=12% Similarity=0.248 Sum_probs=58.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHHHHhhh--ccCChhhHhHHHHHHHHHHHhhcCccccccchHHHHH
Q 000166 1260 CLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL--RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337 (1974)
Q Consensus 1260 ~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~gl--ksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA 1337 (1974)
.|++-+++..--+|-.|--+|-|+..-. -.|+|.++| ..-|+=+|-||.+-||.+ ...++++.+.
T Consensus 191 al~~~l~~~SalfrhEvAfVfGQl~s~~----ai~~L~k~L~d~~E~pMVRhEaAeALGaI---------a~e~~~~vL~ 257 (289)
T KOG0567|consen 191 ALIDGLADDSALFRHEVAFVFGQLQSPA----AIPSLIKVLLDETEHPMVRHEAAEALGAI---------ADEDCVEVLK 257 (289)
T ss_pred HHHHhcccchHHHHHHHHHHHhhccchh----hhHHHHHHHHhhhcchHHHHHHHHHHHhh---------cCHHHHHHHH
Confidence 4455555555555555544444443211 135555555 445688999999999986 6678999999
Q ss_pred HHhccCChhHHHHHHHHHH
Q 000166 1338 SLTAERDGEIRKAALNTLA 1356 (1974)
Q Consensus 1338 ~~i~drD~~VR~AALn~l~ 1356 (1974)
++.+|-++-||..+.-+|-
T Consensus 258 e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH
Confidence 9999999999998877765
No 233
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=23.46 E-value=1.3e+03 Score=27.56 Aligned_cols=128 Identities=14% Similarity=0.157 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh-
Q 000166 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK- 413 (1974)
Q Consensus 336 DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLekl-KEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~- 413 (1974)
|.+..+....+.++..+++.... |...+++.|-.-+ ++.-+.++.-..++|..++.+..+.+--...-+..-|.
T Consensus 95 ~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~ 170 (234)
T PF12530_consen 95 DEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSL 170 (234)
T ss_pred cchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCC
Confidence 44555555556777888876554 8889999999999 78888888888899999987644444444444443343
Q ss_pred cCCchhHHHHHHHHHHHHhhC--ChhHHhHhhhhhHHHHHhhhCCCCH-------HHHHHHHHH
Q 000166 414 NKVPLVRSLTLNWVTFCIETS--SKAAVLKVHKDYVPICMECLNDGTP-------EVRDAAFSV 468 (1974)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~--~~~~~~~~~k~~~~~l~k~l~Ds~~-------~VR~aA~~~ 468 (1974)
.+-|.|=.....|+. .+... +......+...++..+-+.....+. .||-+|+++
T Consensus 171 ~~rp~v~~~l~~l~~-l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~a 233 (234)
T PF12530_consen 171 DYRPLVLKSLCSLFA-LVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEA 233 (234)
T ss_pred ccchHHHHHHHHHHH-HhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhc
Confidence 344777666666665 22221 2222334446678888888888874 455555443
No 234
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=23.25 E-value=5e+02 Score=35.37 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=62.1
Q ss_pred hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000166 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1974)
Q Consensus 932 k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~ 1011 (1974)
+....++.-+.++|.|.-+-+|.-|++.+..+++-- ...|.-|+|+.....+
T Consensus 342 ~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~----------------sk~~~~r~ev~~lv~r------------ 393 (1128)
T COG5098 342 QKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN----------------SKTVGRRHEVIRLVGR------------ 393 (1128)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc----------------ccccchHHHHHHHHHH------------
Confidence 334455666788999999999999999888776531 1234457777655544
Q ss_pred hhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHH
Q 000166 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1049 (1974)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~ 1049 (1974)
||+||+.-||++|-.++..++..-.+..+.
T Consensus 394 --------~lqDrss~VRrnaikl~SkLL~~HPF~~~h 423 (1128)
T COG5098 394 --------RLQDRSSVVRRNAIKLCSKLLMRHPFASEH 423 (1128)
T ss_pred --------HhhhhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence 579999999999999999998887777766
No 235
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=23.01 E-value=8e+02 Score=31.07 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=69.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch-hHhHH--HHHHHHHHHHHHhc-C---hhHHhhh
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLV--MATLITLGAVASAM-G---PAVEKSS 934 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~Ds-Nk~lv--~~al~ii~~lA~am-G---~~~~k~~ 934 (1974)
+-+.+=..|.+||+.++ .++.| ..|++-+-.-+.+. ..|+. ...|..+-+++.|| . =..++|.
T Consensus 187 ~~~~~~~~r~~aL~sL~-----tD~gl-----~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 187 LVGSNEEKRREALQSLR-----TDPGL-----QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HhCCCHHHHHHHHHHhc-----cCCCc-----hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 44567778889988874 23333 45555555555322 22222 22344455556665 2 2457999
Q ss_pred hhhhHHHHHHhc----------cCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhc
Q 000166 935 KGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1974)
Q Consensus 935 k~l~~~il~~l~----------D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~ 1002 (1974)
..|+|+++.|+- |.--.+|+-|-..|..++...+ +.++.++..+..-+.+.|.
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~---------------~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFS---------------TSYNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcC---------------CCCCcHHHHHHHHHHHHHc
Confidence 999999999983 3334778877777777766654 1134455666655555553
No 236
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=22.82 E-value=1.9e+02 Score=29.27 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=59.6
Q ss_pred HHHHHHHhcChhHHhhhhhhh--HHHHHHh-ccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHH
Q 000166 918 TLGAVASAMGPAVEKSSKGVL--SDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF 994 (1974)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~--~~il~~l-~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l 994 (1974)
.+..||..+|+...+.++-+- ..=+..+ .|....+.+-+.+.|..|....|-+.-+..+..+|.. + +|.+++
T Consensus 6 ~l~~ia~~LG~dW~~LA~eLg~s~~dI~~i~~e~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~--i---~R~DIv 80 (84)
T cd08803 6 RMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTK--I---NRIDIV 80 (84)
T ss_pred HHHHHHHHhhccHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH--C---CcHHHH
Confidence 466789999999999888654 3335566 5557778899999999999999988888899999983 3 588887
Q ss_pred HHH
Q 000166 995 DWL 997 (1974)
Q Consensus 995 ~wL 997 (1974)
..|
T Consensus 81 ~~~ 83 (84)
T cd08803 81 TLL 83 (84)
T ss_pred Hhc
Confidence 654
No 237
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=22.65 E-value=1.9e+03 Score=28.98 Aligned_cols=65 Identities=11% Similarity=0.208 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCC-hhHHHHHHHHHHHHHHhhCC--chhhHHHhhh
Q 000166 145 VVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD-QNVRASSKGLTLELCRWIGK--DPVKTILFEK 211 (1974)
Q Consensus 145 vaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~d-k~VR~ea~~L~velyrwlG~--~~lk~~L~~~ 211 (1974)
.+.++.-+.++|..|-. -++-.|-.....++.+.. ..+|..|..|+.++-+.=+. ...+..+|..
T Consensus 7 R~~a~~~l~~~i~~~~~--~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~ 74 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPL--SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHhCCc--hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHH
Confidence 46788889999999976 456678888889998874 56999999999999876543 2344444443
No 238
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=21.76 E-value=1e+03 Score=32.19 Aligned_cols=146 Identities=15% Similarity=0.164 Sum_probs=93.1
Q ss_pred ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh
Q 000166 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1974)
Q Consensus 322 dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l 401 (1974)
+|-.++..-| .+..+=.+|++.|.... +.|-.....-+..+++-..|--..||-.+...|-.++....--+
T Consensus 24 ~y~~il~~~k-----g~~k~K~Laaq~I~kff----k~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 24 DYKEILDGVK-----GSPKEKRLAAQFIPKFF----KHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHHHHGGG-----S-HHHHHHHHHHHHHHH----CC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHHHHHcc-----CCHHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 4555544333 34667777888877666 56888888999999999999999999999999888876411224
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 402 ~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
.-+.|-+...|+.-.|.-...+-+=|...+...++.++..+.+.+.+. ...+..||+-+...|..-++-++...+
T Consensus 95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl~~kl~~l~~~~~ 169 (556)
T PF05918_consen 95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFLREKLKPLKPELL 169 (556)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHhhCcHHHh
Confidence 455566667778888877766666677777777777775544444332 245678999999888877776665444
No 239
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=21.75 E-value=1.1e+03 Score=30.40 Aligned_cols=171 Identities=14% Similarity=0.187 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHh-hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHH-----HHHHHHhcCCCCccchhhhccchh
Q 000166 617 ERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEV-----INYLAATATKFPKKCVVLCLLGIS 690 (1974)
Q Consensus 617 ~RL~a~E~l~~~v~~-~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~lei-----l~~la~~~~~fs~~~~~~~l~~lv 690 (1974)
.+.+.||.+.+.+++ ..+-.-.+|.|-|++.+.|.+.|+-|..+.-.+|= =.......+.|-+. ..+
T Consensus 22 q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~-------d~~ 94 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG-------DAL 94 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC-------chh
Confidence 788999999999988 45445568999999999999887766655443331 00001112222222 223
Q ss_pred hccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhH----HHHHhhh
Q 000166 691 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL----IDFCKDT 766 (1974)
Q Consensus 691 eKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~l----I~~~k~~ 766 (1974)
.|++|. |..+-...+..-.+.++.- -.--++.-++.+|..=|...+..+++ |++ ++-+|++
T Consensus 95 ~rv~d~---------l~qLLnk~sl~~Lf~~~~~-----~D~~irek~l~fi~tKl~~l~~e~L~-kevE~~iv~eikka 159 (460)
T KOG2213|consen 95 SRVNDV---------LVQLLNKASLTGLFGQIEV-----GDEQIREKVLKFIRTKLITLKGEVLT-KEVERHIVDEIKKA 159 (460)
T ss_pred hhhHHH---------HHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHhhcccHHHhh-hHHHHHHHHHHHHH
Confidence 333332 2222222233333333322 14456777888888888877777666 554 3445665
Q ss_pred cCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCC
Q 000166 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF 818 (1974)
Q Consensus 767 ~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~ 818 (1974)
|++....==+.-++.|+.+. .+=.-..++.|+.|=+||+-..+
T Consensus 160 -l~dVtgeef~lfm~~L~~lk--------~~~~k~~~a~lqeLa~~~e~~a~ 202 (460)
T KOG2213|consen 160 -LEDVTGEEFTLFMDILASLK--------SLQTKAGEARLQELAEEQEGLAD 202 (460)
T ss_pred -HHhccHHHHHHHHHHHHhhh--------cccCCCCHHHHHHHHHHHhhhhc
Confidence 66555443333333333322 11124458889999999886543
No 240
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.06 E-value=4.4e+02 Score=36.44 Aligned_cols=99 Identities=10% Similarity=0.069 Sum_probs=65.5
Q ss_pred hhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCc--cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccc--cccc
Q 000166 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA--TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS--GQLK 1331 (1974)
Q Consensus 1256 ~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~--skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~--~~~K 1331 (1974)
.||-+||+=.... .=..++..++.|=.+ .-+|..|=+-+. ++.+|..+|..+|++|.+...-+- ...-
T Consensus 39 ~l~~~l~~y~~~t------~s~~~~~il~~~~~P~~K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~ 110 (668)
T PF04388_consen 39 WLVNGLVDYYLST------NSQRALEILVGVQEPHDKHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTP 110 (668)
T ss_pred HHHHHHHHHHhhc------CcHHHHHHHHhcCCccHHHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcCh
Confidence 5566666544331 112344445555444 334444444453 567999999999999999887762 3444
Q ss_pred hHHHHHHHhc-cCChhHHHHHHHHHHHHHHHh
Q 000166 1332 SLQIVASLTA-ERDGEIRKAALNTLATGYKIL 1362 (1974)
Q Consensus 1332 al~~iA~~i~-drD~~VR~AALn~l~~~Y~~~ 1362 (1974)
-++.+-+++- |.|..|=.+||.||+.+-=++
T Consensus 111 Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 111 LFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 5688877776 999999999999999765443
No 241
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=20.86 E-value=4e+02 Score=26.91 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=52.3
Q ss_pred HHHHHHHhcChhHHhhhhhhh--HHHHHHhc-cCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcc
Q 000166 918 TLGAVASAMGPAVEKSSKGVL--SDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 983 (1974)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~--~~il~~l~-D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~ 983 (1974)
++..|+..+|+..++.++.+. .+-+..+. |+-..+++.+.+.|..|...-|-+.-+..+..+|..-
T Consensus 4 ~f~~i~~~lG~~Wk~laR~LGlse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~At~~~L~~aL~~~ 72 (86)
T cd08306 4 AFDVICENVGRDWRKLARKLGLSETKIESIEEAHPRNLREQVRQSLREWKKIKKKEAKVADLIKALRDC 72 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcchHHHHHHHHHHHc
Confidence 567789999999998887643 44455444 5666899999999999999999888888888888743
No 242
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=1.6e+03 Score=28.58 Aligned_cols=180 Identities=13% Similarity=0.160 Sum_probs=91.5
Q ss_pred ccCChHHHHHHHHHHHHhh-hcCCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh---ccccccchhhhHH
Q 000166 295 KATKWSERKDAVAELTKLA-STKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---RTHFSGSSRFLLP 369 (1974)
Q Consensus 295 ~s~KWkeRkEALe~L~~L~-~~pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gL---r~~F~~y~~~~l~ 369 (1974)
++..-.-=+.+|+.|..+. +.|++.+. ...=++..|..-..|+.+-+ .+++|+..-|.+= |..|-.- .+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~--~~~~~v~~Ac~~hE~nrQ~~m~~--~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTL--LTLQWLQKACIMHEVNRQLFMEL--KILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHH--HHHHHHHHHHHHhHHHHHHHHHh--hHHH
Confidence 4444455566788887766 58888763 45556666655554554433 3444554444331 3334221 2334
Q ss_pred HHH-HHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC-ChhHH--------
Q 000166 370 VLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-SKAAV-------- 439 (1974)
Q Consensus 370 ~lL-eklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~-~~~~~-------- 439 (1974)
-|+ --..+.|.-++.++..++-++. .-+|+-=.+-.+-+|.---++...+.-|...++.. .+..+
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~-----~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~ 267 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALL-----TDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLK 267 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhc-----CCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHH
Confidence 444 2345677745555555555442 22221111111112222222333333444444321 11111
Q ss_pred -----hHhhhhh-----HHHHHhhhCC-CCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000166 440 -----LKVHKDY-----VPICMECLND-GTPEVRDAAFSVLAAIAKSVGMRPLER 483 (1974)
Q Consensus 440 -----~~~~k~~-----~~~l~k~l~D-s~~~VR~aA~~~l~~lmk~~Ge~~l~~ 483 (1974)
..+++++ +..++.|++| ..-.+|+.+-.|+..+-++.|.+.+..
T Consensus 268 ~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs 322 (461)
T KOG4199|consen 268 ALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKS 322 (461)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHH
Confidence 1122332 3468899999 567899999999999999999765543
No 243
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.63 E-value=1.5e+03 Score=32.13 Aligned_cols=181 Identities=19% Similarity=0.152 Sum_probs=107.5
Q ss_pred hhhccCChHHHHHHHHHHHHhhhcCCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHH
Q 000166 292 EGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (1974)
Q Consensus 292 ~~l~s~KWkeRkEALe~L~~L~~~pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~ 370 (1974)
+.+.++--=.|.-||..+..++..-+-.+- .-.-++......+.|-+--|-..|++-+..|+.- |=..++|.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~d 806 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPD 806 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHH
Confidence 334455555677777777776653322221 1223566667777788888888888877777754 77788999
Q ss_pred HHH-HhccCCHH-------HHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhH
Q 000166 371 LLE-KLKEKKPT-------VAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (1974)
Q Consensus 371 lLe-klKEKK~~-------V~eA~~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~ 441 (1974)
+.| ..-+||.. |-||+.+.+.+...- |...-+ ++.-...+....--..|+..+.-+..+.....-..-.-
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel-~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGEL-VFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccH-HHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 998 55555555 566666666554332 222122 22222233332222348877777777765432111111
Q ss_pred hhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000166 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1974)
Q Consensus 442 ~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1974)
++..+.-++.-...|..+-||.||.-.+..+..-.|++.
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 222222233334469999999999999999999999763
No 244
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=20.36 E-value=1e+03 Score=29.69 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhccccccchhhhHHHHHHHhcc-------CCHHHHHHHHHHHHHHHHhcCCC---------hhhhH
Q 000166 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-------KKPTVAESLTQTLQAMHKAGCLN---------LVDVV 405 (1974)
Q Consensus 342 v~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKE-------KK~~V~eA~~~aLda~~~~~~~~---------l~~~~ 405 (1974)
....++|++.+.+.++..+.++...++..+++..-+ .=|..|.+.-+-|.++..+ |.+ +..++
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-~f~~l~~lp~~~f~~~i 167 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH-CFPALLQLPPEQFKLVI 167 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH-HTHHHHHS-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHH
Confidence 345677888888888888888777777766665432 4577777777777777665 422 34667
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000166 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 406 e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1974)
+.+.-+++|.++.|-...+.-|...+.+..
T Consensus 168 dsi~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 168 DSIVWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999998888887643
No 245
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=20.33 E-value=1.3e+02 Score=24.71 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=24.3
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 446 YVPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
.++.+++++...+++++..++.+|..|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 688899999999999999999998765
No 246
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=20.23 E-value=3.2e+02 Score=26.95 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=58.5
Q ss_pred HHHHHHHHHHh-cChhHHhhhhhhh--HHHHHHhccCch-hHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchH
Q 000166 915 TLITLGAVASA-MGPAVEKSSKGVL--SDILKCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGR 990 (1974)
Q Consensus 915 al~ii~~lA~a-mG~~~~k~~k~l~--~~il~~l~D~K~-~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R 990 (1974)
+...+..++.. +|+.+++.++.+. ..-+..+....+ .+++.+.+.|..|...-|-+.-+..+..+|..- +|
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~Lg~~~~~i~~i~~~~~~~~~~~~~~lL~~W~~~~g~~at~~~L~~aL~~~-----~~ 78 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKLGLSEADIDQIRTEAPRDLAEQSVQLLRLWEQREGKNATLGTLLEALRKM-----GR 78 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHc-----Ch
Confidence 34566677877 8999988877654 455666666654 799999999999999998777788888888743 36
Q ss_pred HHHHHHH
Q 000166 991 KDLFDWL 997 (1974)
Q Consensus 991 ~e~l~wL 997 (1974)
.++..-+
T Consensus 79 ~d~a~~i 85 (88)
T smart00005 79 DDAVELL 85 (88)
T ss_pred HHHHHHH
Confidence 6655543
Done!