Query 000166
Match_columns 1974
No_of_seqs 264 out of 418
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:45:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 100.0 1.4E-63 4.9E-68 578.4 26.9 256 1130-1389 3-265 (266)
2 2qk1_A Protein STU2; STU2P, XM 100.0 3E-40 1E-44 384.2 27.5 231 270-502 2-248 (249)
3 4ffb_C Protein STU2; tubulin f 100.0 3E-39 1E-43 380.7 20.7 240 1-242 1-261 (278)
4 2qk2_A LP04448P; mini spindles 100.0 6.9E-33 2.4E-37 319.2 25.0 231 271-504 2-235 (242)
5 4ffb_C Protein STU2; tubulin f 100.0 2.9E-30 1E-34 304.1 11.9 226 602-831 12-259 (278)
6 2qk1_A Protein STU2; STU2P, XM 100.0 5.9E-29 2E-33 289.3 19.7 227 841-1070 4-249 (249)
7 2of3_A ZYG-9; multifunctional 100.0 3.4E-27 1.2E-31 274.1 23.5 218 592-816 37-264 (266)
8 2qk2_A LP04448P; mini spindles 99.9 1.4E-26 4.8E-31 266.6 21.5 228 842-1072 4-236 (242)
9 1u6g_C TIP120 protein, CAND1; 99.9 1.7E-22 5.7E-27 282.5 65.7 888 16-1043 53-1096(1230)
10 1u6g_C TIP120 protein, CAND1; 99.9 1.4E-21 4.6E-26 273.4 61.7 869 289-1372 10-1047(1230)
11 1b3u_A Protein (protein phosph 99.9 1.6E-20 5.6E-25 239.9 39.1 554 289-1039 14-585 (588)
12 4fdd_A Transportin-1; heat rep 99.9 6.1E-18 2.1E-22 228.0 61.9 752 22-1065 24-848 (852)
13 2bpt_A Importin beta-1 subunit 99.9 6.5E-18 2.2E-22 226.1 59.2 704 20-968 104-860 (861)
14 2bpt_A Importin beta-1 subunit 99.9 1.7E-17 5.8E-22 222.1 60.4 726 22-1001 16-855 (861)
15 1qgr_A Protein (importin beta 99.8 1.4E-16 4.8E-21 213.7 58.6 619 289-1041 132-871 (876)
16 4fdd_A Transportin-1; heat rep 99.8 4.2E-16 1.4E-20 210.2 58.0 595 289-1042 132-785 (852)
17 1b3u_A Protein (protein phosph 99.8 8E-18 2.7E-22 215.1 38.3 552 605-1357 14-584 (588)
18 1qgr_A Protein (importin beta 99.8 3E-16 1E-20 210.5 47.4 652 290-1051 95-837 (876)
19 1ibr_B P95, importin beta-1 su 99.2 1.5E-08 5E-13 125.4 36.0 377 605-1045 5-441 (462)
20 1ibr_B P95, importin beta-1 su 99.0 8.9E-08 3E-12 118.4 31.9 374 21-478 11-441 (462)
21 2vgl_B AP-2 complex subunit be 99.0 6.4E-07 2.2E-11 116.3 40.5 177 288-477 16-192 (591)
22 2vgl_B AP-2 complex subunit be 98.8 8.7E-07 3E-11 115.1 29.6 383 605-1044 17-422 (591)
23 2jdq_A Importin alpha-1 subuni 98.6 8.3E-07 2.8E-11 109.6 20.8 378 603-1040 22-442 (450)
24 1wa5_B Importin alpha subunit; 98.6 6.2E-07 2.1E-11 114.4 19.5 381 603-1045 89-514 (530)
25 2jdq_A Importin alpha-1 subuni 98.6 7.1E-06 2.4E-10 101.3 27.7 183 856-1040 23-220 (450)
26 1wa5_B Importin alpha subunit; 98.6 5.2E-06 1.8E-10 105.9 26.7 382 16-474 92-510 (530)
27 4b8j_A Importin subunit alpha- 98.5 1.4E-06 4.7E-11 110.9 20.2 380 604-1043 77-498 (528)
28 2iw3_A Elongation factor 3A; a 98.5 1E-06 3.4E-11 118.8 18.5 193 289-487 18-217 (986)
29 2x1g_F Cadmus; transport prote 98.4 0.00081 2.8E-08 92.1 44.8 263 732-1042 557-859 (971)
30 2z6g_A B-catenin; FULL-length, 98.4 0.00026 9E-09 95.0 38.6 496 323-1044 113-666 (780)
31 1w63_A Adapter-related protein 98.4 0.00045 1.5E-08 90.3 37.6 83 384-473 53-135 (618)
32 4b8j_A Importin subunit alpha- 98.3 8.6E-05 2.9E-09 94.4 29.3 182 856-1040 77-272 (528)
33 2z6h_A Catenin beta-1, beta-ca 98.3 0.00082 2.8E-08 88.0 37.6 497 316-1046 9-532 (644)
34 2z6g_A B-catenin; FULL-length, 98.3 0.00033 1.1E-08 94.0 33.9 518 289-968 119-666 (780)
35 3ltm_A Alpha-REP4; protein eng 98.3 1.8E-05 6.3E-10 88.1 17.8 179 288-502 22-200 (211)
36 3ltj_A Alpharep-4; protein eng 98.2 2.1E-05 7.1E-10 87.0 17.8 178 288-501 17-194 (201)
37 3ltm_A Alpha-REP4; protein eng 98.2 1.8E-05 6E-10 88.3 17.1 186 757-1041 18-203 (211)
38 2x1g_F Cadmus; transport prote 98.2 0.034 1.2E-06 76.1 52.1 319 649-1052 359-732 (971)
39 1jdh_A Beta-catenin; beta-cate 98.2 0.01 3.5E-07 74.7 43.1 146 326-473 18-171 (529)
40 2x19_B Importin-13; nuclear tr 98.2 0.031 1.1E-06 76.2 50.9 348 654-1053 460-859 (963)
41 2x19_B Importin-13; nuclear tr 98.1 0.1 3.5E-06 71.2 65.0 212 698-968 423-652 (963)
42 1wa5_C Importin alpha RE-expor 98.1 0.0086 2.9E-07 82.1 42.3 284 717-1054 455-761 (960)
43 3ltj_A Alpharep-4; protein eng 98.1 5.7E-05 2E-09 83.4 16.5 182 853-1069 14-195 (201)
44 1w63_A Adapter-related protein 98.1 0.00015 5.2E-09 94.7 23.0 400 604-1041 37-451 (618)
45 1wa5_C Importin alpha RE-expor 98.0 0.11 3.9E-06 71.1 50.9 283 656-964 471-790 (960)
46 1oyz_A Hypothetical protein YI 98.0 0.00025 8.6E-09 82.5 20.8 229 686-981 25-262 (280)
47 2vgl_A Adaptor protein complex 97.8 0.026 8.9E-07 73.8 38.0 102 364-472 33-138 (621)
48 3ul1_B Importin subunit alpha- 97.8 0.00073 2.5E-08 86.1 22.6 374 604-1039 60-476 (510)
49 1jdh_A Beta-catenin; beta-cate 97.8 0.019 6.4E-07 72.3 34.8 183 857-1042 63-257 (529)
50 3tpo_A Importin subunit alpha- 97.8 0.002 6.7E-08 82.5 25.5 375 604-1039 79-495 (529)
51 1oyz_A Hypothetical protein YI 97.8 0.00039 1.3E-08 80.8 17.2 162 289-473 58-220 (280)
52 2vgl_A Adaptor protein complex 97.7 0.0044 1.5E-07 81.1 27.9 397 10-472 145-587 (621)
53 4db6_A Armadillo repeat protei 97.7 0.00019 6.5E-09 79.4 13.1 183 289-473 16-208 (210)
54 3now_A UNC-45 protein, SD10334 97.7 0.021 7.1E-07 76.4 33.3 636 301-1042 24-783 (810)
55 2iw3_A Elongation factor 3A; a 97.6 0.0016 5.5E-08 88.2 22.6 271 719-1059 16-299 (986)
56 4db8_A Armadillo-repeat protei 97.6 0.00041 1.4E-08 78.9 14.3 183 288-473 15-208 (252)
57 2z6h_A Catenin beta-1, beta-ca 97.6 0.015 5.2E-07 76.0 30.7 383 16-477 103-530 (644)
58 3tpo_A Importin subunit alpha- 97.5 0.031 1.1E-06 71.3 31.8 373 289-785 80-494 (529)
59 4hxt_A De novo protein OR329; 97.5 0.00095 3.3E-08 75.3 14.8 182 289-474 6-199 (252)
60 3now_A UNC-45 protein, SD10334 97.5 0.011 3.6E-07 79.1 26.5 418 18-475 297-783 (810)
61 2db0_A 253AA long hypothetical 97.4 0.0065 2.2E-07 66.1 18.7 208 281-501 25-242 (253)
62 4db8_A Armadillo-repeat protei 97.3 0.00062 2.1E-08 77.4 10.4 183 289-473 58-250 (252)
63 3ul1_B Importin subunit alpha- 97.3 0.044 1.5E-06 69.7 28.2 183 856-1040 60-260 (510)
64 4hxt_A De novo protein OR329; 97.3 0.004 1.4E-07 70.1 16.6 186 289-478 48-245 (252)
65 1xqr_A HSPBP1 protein; armadil 97.3 0.0012 4E-08 78.7 12.5 171 300-475 55-239 (296)
66 4db6_A Armadillo repeat protei 97.3 0.0026 9E-08 70.2 14.6 151 322-474 9-167 (210)
67 3m1i_C Exportin-1; heat repeat 96.9 1.9 6.6E-05 59.6 41.5 383 64-501 207-646 (1049)
68 1xqr_A HSPBP1 protein; armadil 96.4 0.033 1.1E-06 66.2 15.2 168 868-1042 55-239 (296)
69 3ibv_A Exportin-T; karyopherin 96.3 6.4 0.00022 54.1 46.7 287 697-1017 458-785 (980)
70 3b2a_A TON_1937, putative unch 96.2 0.072 2.5E-06 60.5 15.7 175 289-469 79-256 (265)
71 1vsy_5 Proteasome activator BL 96.1 2.1 7.2E-05 58.8 32.8 173 300-480 148-371 (997)
72 1te4_A Conserved protein MTH18 95.5 0.019 6.5E-07 59.3 7.0 117 327-471 14-130 (131)
73 1vsy_5 Proteasome activator BL 95.2 0.25 8.5E-06 67.8 18.1 143 55-199 511-666 (997)
74 2db0_A 253AA long hypothetical 94.8 0.19 6.3E-06 55.1 11.9 165 854-1039 33-208 (253)
75 3b2a_A TON_1937, putative unch 94.8 0.29 9.9E-06 55.7 13.9 181 858-1042 38-219 (265)
76 3m1i_C Exportin-1; heat repeat 94.7 21 0.00073 49.2 57.7 173 296-477 27-227 (1049)
77 4hat_C Exportin-1; heat repeat 94.3 2.2 7.6E-05 58.9 24.2 383 328-791 454-881 (1023)
78 3ldz_A STAM-1, signal transduc 94.1 0.24 8.2E-06 52.5 11.0 109 862-979 18-128 (140)
79 1te4_A Conserved protein MTH18 93.9 0.13 4.4E-06 53.0 8.4 86 1258-1356 44-129 (131)
80 3ibv_A Exportin-T; karyopherin 93.8 30 0.001 47.6 43.8 170 297-477 20-225 (980)
81 1x5b_A Signal transducing adap 93.6 0.26 8.9E-06 53.5 10.4 107 862-977 28-137 (163)
82 1mhq_A ADP-ribosylation factor 93.1 0.47 1.6E-05 50.7 11.2 112 861-981 13-132 (148)
83 3g2s_A C-terminal fragment of 93.0 0.5 1.7E-05 50.6 11.2 100 862-970 24-131 (149)
84 1juq_A ADP-ribosylation factor 92.3 0.29 9.9E-06 53.6 8.4 111 862-981 26-144 (171)
85 1elk_A Target of MYB1; superhe 92.0 0.48 1.7E-05 51.1 9.6 110 862-980 29-145 (157)
86 3oc3_A Helicase MOT1, MOT1; re 91.7 0.66 2.3E-05 58.4 11.3 150 288-473 177-327 (800)
87 3rru_A TOM1L1 protein; structu 91.4 0.42 1.4E-05 51.3 8.2 110 862-980 29-145 (152)
88 4hat_C Exportin-1; heat repeat 91.0 36 0.0012 47.1 28.7 157 338-500 660-854 (1023)
89 1dvp_A HRS, hepatocyte growth 90.8 0.42 1.4E-05 54.3 8.0 100 861-969 17-119 (220)
90 3nmw_A APC variant protein; AR 90.6 1.8 6E-05 52.7 13.8 187 289-478 131-338 (354)
91 3tjz_B Coatomer subunit gamma; 90.3 1.4 4.9E-05 53.5 12.4 144 1219-1372 33-180 (355)
92 3l6x_A Catenin delta-1; cateni 89.6 35 0.0012 44.2 25.2 370 637-1043 48-478 (584)
93 3zyq_A Hepatocyte growth facto 89.2 2 6.8E-05 49.0 11.9 109 862-979 21-132 (226)
94 3tjz_B Coatomer subunit gamma; 89.0 6.7 0.00023 47.7 16.9 188 270-473 16-204 (355)
95 3nmz_A APC variant protein; pr 87.9 4.8 0.00016 50.6 15.2 184 289-475 247-451 (458)
96 3nmw_A APC variant protein; AR 87.9 6 0.0002 48.0 15.6 171 301-473 100-291 (354)
97 1lrv_A LRV, leucine-rich repea 87.7 0.64 2.2E-05 53.7 6.6 187 723-1037 55-242 (244)
98 3gs3_A Symplekin, LD45768P; he 87.4 24 0.00081 41.0 19.4 127 300-432 30-173 (257)
99 1mhq_A ADP-ribosylation factor 86.8 2 7E-05 45.8 9.4 96 294-396 14-117 (148)
100 3g2s_A C-terminal fragment of 86.4 2.7 9.2E-05 44.9 10.0 97 293-396 23-127 (149)
101 3ldz_A STAM-1, signal transduc 86.4 1.7 6E-05 45.8 8.5 97 293-396 17-115 (140)
102 3nmz_A APC variant protein; pr 85.6 7.8 0.00027 48.7 15.3 170 302-473 217-407 (458)
103 1juq_A ADP-ribosylation factor 85.6 2.1 7.2E-05 46.8 8.9 96 294-396 26-129 (171)
104 3o2t_A Symplekin; heat repeat, 85.5 24 0.00081 43.3 18.9 127 300-432 40-183 (386)
105 3a6p_A Exportin-5; exportin-5, 84.7 1.5E+02 0.0052 41.6 38.0 225 698-973 439-705 (1204)
106 1x5b_A Signal transducing adap 83.6 3.8 0.00013 44.4 9.7 96 294-396 28-126 (163)
107 4gmo_A Putative uncharacterize 83.6 2.3 7.9E-05 56.1 9.8 87 290-376 39-129 (684)
108 3opb_A SWI5-dependent HO expre 80.1 1.7E+02 0.0059 39.0 31.2 301 715-1041 290-635 (778)
109 3opb_A SWI5-dependent HO expre 79.3 16 0.00054 48.6 15.0 171 301-474 517-728 (778)
110 1xm9_A Plakophilin 1; armadill 78.7 13 0.00043 46.5 13.5 178 289-472 6-218 (457)
111 1elk_A Target of MYB1; superhe 78.1 3.6 0.00012 44.3 7.1 96 294-396 29-131 (157)
112 4ady_A RPN2, 26S proteasome re 78.1 12 0.00042 50.7 13.6 34 445-478 647-680 (963)
113 3gjx_A Exportin-1; transport, 78.0 2.3E+02 0.0079 39.3 27.5 156 339-500 687-880 (1073)
114 3o2t_A Symplekin; heat repeat, 76.2 14 0.00046 45.5 12.3 91 380-475 40-130 (386)
115 3gs3_A Symplekin, LD45768P; he 75.5 15 0.00053 42.5 12.0 91 381-476 31-121 (257)
116 1xm9_A Plakophilin 1; armadill 74.8 13 0.00043 46.4 12.0 140 329-474 6-172 (457)
117 1dvp_A HRS, hepatocyte growth 73.0 12 0.0004 42.3 10.0 95 294-395 18-115 (220)
118 3l6x_A Catenin delta-1; cateni 73.0 34 0.0011 44.3 15.4 156 325-486 308-485 (584)
119 1lrv_A LRV, leucine-rich repea 72.1 8.1 0.00028 44.5 8.5 137 724-960 104-241 (244)
120 4ady_A RPN2, 26S proteasome re 71.9 1.4E+02 0.0049 40.7 21.3 257 731-1037 450-715 (963)
121 3a6p_A Exportin-5; exportin-5, 71.5 3.4E+02 0.011 38.1 44.2 375 687-1071 252-736 (1204)
122 3tt9_A Plakophilin-2; cell adh 66.9 48 0.0017 37.8 13.4 141 327-473 10-179 (233)
123 3rru_A TOM1L1 protein; structu 64.8 6.2 0.00021 42.3 5.1 97 293-396 28-131 (152)
124 3zyq_A Hepatocyte growth facto 64.1 30 0.001 39.3 10.9 63 294-363 21-83 (226)
125 3u0r_A Apoptosis inhibitor 5; 58.8 37 0.0013 42.6 11.0 126 325-459 65-191 (507)
126 3oc3_A Helicase MOT1, MOT1; re 57.4 64 0.0022 41.3 12.6 148 602-786 175-326 (800)
127 4gmo_A Putative uncharacterize 57.4 18 0.00061 47.7 8.6 74 408-483 39-114 (684)
128 1vdy_A Hypothetical protein (R 56.7 8.9 0.00031 40.5 4.5 73 323-396 47-131 (140)
129 1vdy_A Hypothetical protein (R 47.3 35 0.0012 36.1 7.1 17 456-472 112-128 (140)
130 3l9t_A Putative uncharacterize 45.8 1.5E+02 0.005 34.1 12.4 149 323-486 69-218 (240)
131 4atg_A TAF6; transcription, TF 45.5 1.9E+02 0.0066 32.1 13.1 118 300-433 23-142 (196)
132 3grl_A General vesicular trans 44.2 1.7E+02 0.0059 38.1 14.2 164 290-474 26-195 (651)
133 3gjx_A Exportin-1; transport, 43.4 97 0.0033 43.0 12.6 164 338-501 492-672 (1073)
134 3tt9_A Plakophilin-2; cell adh 39.0 61 0.0021 36.9 8.1 70 404-474 9-81 (233)
135 4atg_A TAF6; transcription, TF 31.1 2.5E+02 0.0087 31.2 11.1 88 387-478 26-123 (196)
136 3rjo_A Endoplasmic reticulum a 28.8 7.2E+02 0.025 30.2 16.1 104 300-408 106-219 (419)
137 3d9j_A RNA-binding protein 16; 27.1 2.7E+02 0.0092 29.2 10.1 118 368-486 7-133 (145)
138 2f31_A Diaphanous protein homo 26.0 77 0.0026 35.9 6.1 87 703-791 34-128 (233)
139 3u0r_A Apoptosis inhibitor 5; 25.9 4.4E+02 0.015 33.3 12.9 141 322-481 30-170 (507)
140 2nsz_A Programmed cell death p 24.8 3E+02 0.01 28.2 9.8 87 341-433 22-115 (129)
141 2ion_A PDCD4, programmed cell 24.2 3E+02 0.01 29.2 9.8 87 341-433 24-117 (152)
142 1ug3_A EIF4GI, eukaryotic prot 22.1 4.2E+02 0.014 31.5 11.8 132 342-485 27-164 (339)
143 1wxp_A THO complex subunit 1; 22.1 1.6E+02 0.0053 29.5 6.8 78 917-999 19-98 (110)
144 2rg8_A Programmed cell death p 21.9 2.6E+02 0.0087 30.1 8.9 86 341-433 25-116 (165)
145 2f31_A Diaphanous protein homo 20.6 52 0.0018 37.3 3.3 60 142-201 68-129 (233)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-63 Score=578.40 Aligned_cols=256 Identities=28% Similarity=0.570 Sum_probs=247.7
Q ss_pred hhcccCCCChHHHHh----hhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhh
Q 000166 1130 ALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDI 1205 (1974)
Q Consensus 1130 ~~~~~~~~~K~~R~~----~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~ 1205 (1974)
|++ ..+++|++|++ +++++|+|++||+|+|++|++||.+|++++++.+|||+|||+|++|+++|++.++++++++
T Consensus 3 ~~l-~~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~ 81 (266)
T 2of3_A 3 LLL-SDNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSL 81 (266)
T ss_dssp CSB-CCSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred Cce-ecCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHH
Confidence 444 34788999984 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhh
Q 000166 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN 1285 (1974)
Q Consensus 1206 i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~ 1285 (1974)
++++|++|||+++||||+|++|++++||+|.++|++|.+.+|+|+||||++|||+||+|+||+||.||+.+|+|++.++.
T Consensus 82 ~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 82 LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccccchH---HHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000166 1286 FYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKIL 1362 (1974)
Q Consensus 1286 vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal---~~iA~~i~drD~~VR~AALn~l~~~Y~~~ 1362 (1974)
+||++++|+|+++|++|||||||.|||+||+++|++||+. +.|++ +.||++++|||++||+|||||++++|.++
T Consensus 162 v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 162 VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999996 67899 99999999999999999999999999999
Q ss_pred chhHHHHhccCCHHHHhhHHHHHHHhH
Q 000166 1363 GEDIWRYVGKLTDAQKSMLDDRFKWKV 1389 (1974)
Q Consensus 1363 Gd~v~k~vg~ls~k~~smLeer~kr~~ 1389 (1974)
||+||+++|+|++++++||||||||++
T Consensus 239 Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 239 GDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp TTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999975
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-40 Score=384.21 Aligned_cols=231 Identities=25% Similarity=0.440 Sum_probs=219.7
Q ss_pred CCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHH-hh-hcCCCC--CCChhHHHHHHHHHh-cchhHHHHHH
Q 000166 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (1974)
Q Consensus 270 iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~-L~-~~pKi~--~~dy~dL~~~Lkk~l-~DsNv~vv~~ 344 (1974)
.|||||+|||||++|||+ +|++.+.|+||+||++||++|.. ++ +.+++. .++|+++++.|++.| .|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~~-~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSCT-THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCCh-hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 489999999999999995 89999999999999999999999 87 689998 689999999999999 5999999999
Q ss_pred HHHHHHHHHHHhc-cccc-cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC------CChhhhHHHHHHHhhcCC
Q 000166 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (1974)
Q Consensus 345 A~~~i~~LA~gLr-~~F~-~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~------~~l~~~~e~i~~al~~Kn 416 (1974)
|++|++.||+||| +.|. +|...++|+||++|||||++|++++..||++|+.+ + ..|+++++++..+|+|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999997 4 339999999999999999
Q ss_pred chhHHHHHHHHHHHHhhCCh--hHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHH
Q 000166 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1974)
Q Consensus 417 P~vk~etl~~L~r~l~~~~~--~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk 493 (1974)
|++|.+++.||.+++...+. ..+.+.+ +.++|.+.++++|++++||++|++||+++++++|++.+.+++.+||+.||
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998765 4556788 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000166 494 NKLSEMIAG 502 (1974)
Q Consensus 494 ~KI~e~~~~ 502 (1974)
+||++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999986
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-39 Score=380.68 Aligned_cols=240 Identities=24% Similarity=0.357 Sum_probs=187.4
Q ss_pred CchhHhhHhhhcCCCcccccCCCChhHHHHHHHHHHHHhhhcCCC--CC---hhhhhhhhhhhhhcCCCCHHHHHHHHHH
Q 000166 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KD---NRIRELGPLFKKTVADSNAPVQDKALDA 75 (1974)
Q Consensus 1 m~~~~~~~~~~~~Lpl~erL~hK~WKaRl~ayeel~~~f~~~~d~--~d---~~~~~~~~l~kk~v~DsN~~aqEk~lea 75 (1974)
|+.||+ .||++|||+|||.|||||+|++|||+|.+.|+..... +| ..|..+..+++|++.|+|++||++++++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 886554 4899999999999999999999999999999764322 22 2367778899999999999999999999
Q ss_pred HHHHHHHcChhh------hhhhhHHHHHHHhhhhc-CChhhHHHHHHHHHHHHhhchh-hhHHHHHHHHhhccCchhHHH
Q 000166 76 LIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV-DVFLDVMEKAIKNKVAKAVVP 147 (1974)
Q Consensus 76 l~~~l~~a~~~~------~~~~~~v~~~lveK~L~-~r~ktk~~a~e~~l~~vE~e~~-~~v~e~ll~~~~~K~PKvvaa 147 (1974)
+..|+..++... ...+..+++.|++|||+ +|+++++.|.++++.++|.... +.+++.++++++|||||++++
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHH
Confidence 999998765422 12356789999999997 6999999999999999998764 788999999999999999999
Q ss_pred HHHHHHHHHHhhCCCccChhH----HHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCc--hhhHHHhhhchHHHHHHHH
Q 000166 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD--PVKTILFEKMRDTMKKELE 221 (1974)
Q Consensus 148 ai~~l~~~l~~FG~kvv~~K~----ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~--~lk~~L~~~Lkp~q~keLe 221 (1974)
|+.||.++|++||++++++++ +++.++++|+|+|++||++|++++++||+|+|+. ++...++++|||+|+++||
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHH
Confidence 999999999999999998775 6778999999999999999999999999999964 2334567999999999999
Q ss_pred HHHHhcCCCCCC--cchhhhHHh
Q 000166 222 VELVNVSGTARP--TRKIRAEQD 242 (1974)
Q Consensus 222 ~efek~~~~~~P--~R~~Rs~q~ 242 (1974)
++|+|+.+.++| +|+.+.+++
T Consensus 239 ~~f~k~~~~~~~~~~~~~~~~~~ 261 (278)
T 4ffb_C 239 KLFAKVGDEPSSSKMLFEWEKRE 261 (278)
T ss_dssp HHHSCCCC-------CCHHHHHH
T ss_pred HHHHhcCCCCCCCCcchhhhHhh
Confidence 999999876544 344444333
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=6.9e-33 Score=319.24 Aligned_cols=231 Identities=29% Similarity=0.467 Sum_probs=218.0
Q ss_pred CccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhc-CCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHH
Q 000166 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (1974)
Q Consensus 271 Dp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~-pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~ 348 (1974)
|||||++||||+++|| ++|++.+.|++|++|++|++.|..+++. +++..++|+++++.|++++. |+|..|+..|++|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 8999999999999999 5899999999999999999999998875 88888899999999999996 9999999999999
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000166 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1974)
Q Consensus 349 i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1974)
++.||+++|+.|.+|...++|+++++|+|+|+.||+++..||++++.. .+++.+++.+..+++|+||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984 789999999999999999999999999999
Q ss_pred HHHhhCChh-HHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCC
Q 000166 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504 (1974)
Q Consensus 429 r~l~~~~~~-~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~ 504 (1974)
+++..+.+. .....+..++|.++++++|++++||++|.++|+.+++.+|++.+.+++.+||+.++++|+++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~ 235 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAE 235 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 999887543 2345668999999999999999999999999999999999999999999999999999999999753
No 5
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-30 Score=304.10 Aligned_cols=226 Identities=16% Similarity=0.199 Sum_probs=170.1
Q ss_pred CcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc----CCCccchHHHHHHHHHHHHHHHHhcCC-
Q 000166 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML----PGWSEKNVQVQQQVIEVINYLAATATK- 676 (1974)
Q Consensus 602 ~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~----PgwkesNfqV~~k~leil~~la~~~~~- 676 (1974)
+| +.++|.|++||+|++|||++.+.+..........+.+..+.... ..++|+|++|++++++++..++..+..
T Consensus 12 lp--l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP--LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC--HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred CC--HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 55 66899999999999999999999987433222212221111111 235799999999999999999976432
Q ss_pred -----CCccchhhhccchhhc-cccch--hhhHHHHHHHHHHHhhch-HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 000166 677 -----FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (1974)
Q Consensus 677 -----fs~~~~~~~l~~lveK-lgD~K--~r~~a~e~L~~~aE~~~p-~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~ 747 (1974)
++..++..+++++++| +||.| +|..+.++|+.++|...+ ..+++.+..+ .+|||||++++|+.||..+|.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~-l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPF-FEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGG-GGCSCHHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHH
Confidence 2345678899999999 79976 789999999999998765 5666667666 689999999999999999999
Q ss_pred HhccCccchHhH----HHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchh----HhhhhcchHHHHHHHHHHHhcCCCC
Q 000166 748 DFGVSHLKLKDL----IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFE 819 (1974)
Q Consensus 748 eFG~~~l~~K~l----I~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l----~~~l~dlkpall~~Ie~EF~K~~~~ 819 (1974)
+||+..+++++. ++++.++ |+++|+.||++|++++++||+|+|+.+ .+||+++||+++++|+++|+|++++
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~ 247 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDE 247 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC-
T ss_pred HhCCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCC
Confidence 999999998764 4467776 999999999999999999999999876 4688999999999999999999998
Q ss_pred CCCCCccccccc
Q 000166 820 GTVVPKKTVRAS 831 (1974)
Q Consensus 820 ~~p~p~R~~r~~ 831 (1974)
+||+|+|+.+.+
T Consensus 248 ~~~~~~~~~~~~ 259 (278)
T 4ffb_C 248 PSSSKMLFEWEK 259 (278)
T ss_dssp ------CCHHHH
T ss_pred CCCCCcchhhhH
Confidence 888887765543
No 6
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.9e-29 Score=289.30 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=210.6
Q ss_pred CCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHH-HHHHcccCCC--CCCccchHHHHhhhc-cchhHhHHHHHH
Q 000166 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (1974)
Q Consensus 841 ~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~-il~~ankrI~--p~~~geL~~aLk~Rl-~DsNk~lv~~al 916 (1974)
..|++|+|||+++||++|...+.++||++|+||+++|.. +++. +++|. ...|++++.+|++.+ +|+|.+|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999 9975 58888 456899999999999 899999999999
Q ss_pred HHHHHHHHhcC-hhHH-hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc------c-chhhhHHHHHHHhcccCCc
Q 000166 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (1974)
Q Consensus 917 ~ii~~lA~amG-~~~~-k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~------g-l~~~~~~i~~~L~~~~~~p 987 (1974)
++++.||+++| +.|. +|...++|+++++|+|+|+.||+++..||++|++.+ + ++.+++.+..+|.++ ||
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 999999999999976 69
Q ss_pred chHHHHHHHHHHHhccCCCC-----cch-hhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHH
Q 000166 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (1974)
Q Consensus 988 ~~R~e~l~wL~~~l~~~~~~-----~~~-~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~ 1061 (1974)
..|.+++.||.+.+...+.. +.+ ..++..+..+|.|.+++||++|.++|+.+++++|.+.|.+++.+|++.++.
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887653 234 556666888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000166 1062 LILERIKLN 1070 (1974)
Q Consensus 1062 ~i~~~l~k~ 1070 (1974)
+|.++++|+
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999874
No 7
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.95 E-value=3.4e-27 Score=274.09 Aligned_cols=218 Identities=20% Similarity=0.248 Sum_probs=198.3
Q ss_pred HHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 000166 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1974)
Q Consensus 592 Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~l 670 (1974)
|++.+++..++++++..+|+|++||.|++|++.|.+.+++ .++.....|++++|+.. ++.|+|++|++++|+++.++
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999999999999987 55666778999999974 57899999999999999998
Q ss_pred HHhc----CCCCccchhhhccchhhccccch--hhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000166 671 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1974)
Q Consensus 671 a~~~----~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ 744 (1974)
+++. ..++...+..++|.++||+||.| +|+.++++|..+++.++|++|+++++++ ++|||+|++.|||.||.+
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g-~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA-LKSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHG-GGCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHH
Confidence 7654 35788888999999999999998 9999999999999999999999999997 599999999999999999
Q ss_pred HHHHhccCccchHhHH---HHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcC
Q 000166 745 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1974)
Q Consensus 745 ai~eFG~~~l~~K~lI---~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~ 816 (1974)
+|+.||.. ..+ .+ +.+-++ ++++|++||++|+++++++|+++|+.++.++++++|+.+++||+.|.+.
T Consensus 194 li~~~G~~--~~~-~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--PLK-SLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--GGG-GGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--ccc-cccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 99999997 334 55 777777 9999999999999999999999999999999999999999999999864
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.4e-26 Score=266.59 Aligned_cols=228 Identities=18% Similarity=0.257 Sum_probs=210.3
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHH
Q 000166 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLG 920 (1974)
Q Consensus 842 ~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~ 920 (1974)
.|++|++||+++|+++|++.+.|++|++|++|++.+..+++.. +.+....+++++.+|+++| +|+|.+|...|+++++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999863 4555556799999999999 5999999999999999
Q ss_pred HHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHH
Q 000166 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1974)
Q Consensus 921 ~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~ 1000 (1974)
.+|.++|+.|.+|...++|.++.+|+|+|+.||+++..||++++..++++.+++.+...|.++ ||..|.+++.||...
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 799999999999998
Q ss_pred hccCCC----CcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccC
Q 000166 1001 LTGLSG----FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1974)
Q Consensus 1001 l~~~~~----~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~~ 1072 (1974)
+..... .+.+..++..++.||+|++++||++|.++|+.++.++|.+.+.+++.+|++..+++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 877642 124456666789999999999999999999999999999999999999999999999999999754
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.94 E-value=1.7e-22 Score=282.49 Aligned_cols=888 Identities=16% Similarity=0.159 Sum_probs=538.3
Q ss_pred cccccCCCChhHHHHHHHHHHHHhh----------------hcCCCCChh----------------------------hh
Q 000166 16 WEDRLLHKNWKVRNEANIDLAALCD----------------SITDPKDNR----------------------------IR 51 (1974)
Q Consensus 16 l~erL~hK~WKaRl~ayeel~~~f~----------------~~~d~~d~~----------------------------~~ 51 (1974)
|-+.|.|++|+.|..|...+...+. .+.|++... +.
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence 6777889999999999887766542 122333211 11
Q ss_pred hhhhhhhhhcCC-CCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhhhhc-CChhhHHHHHHHHHHHHhhch---h
Q 000166 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA---V 126 (1974)
Q Consensus 52 ~~~~l~kk~v~D-sN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK~L~-~r~ktk~~a~e~~l~~vE~e~---~ 126 (1974)
...+.+-+.+.| .|..+++.+++++..+++..+.....+...+++.+.. +|. ..+..+..|..++-.+++.-. .
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~-~L~~~~~~vR~~a~~al~~l~~~~~~~~~ 211 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALGHLVMSCGNIVF 211 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGG-GGGCSSHHHHHHHHHHHHHHTTTC----C
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 111112234564 8899999999999999877554333344556666544 455 478899999999999887632 2
Q ss_pred hhHHHHHHHHhhccC-chhHHHHHHHHHHHHHhhCCCccC-hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchh
Q 000166 127 DVFLDVMEKAIKNKV-AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 204 (1974)
Q Consensus 127 ~~v~e~ll~~~~~K~-PKvvaaai~~l~~~l~~FG~kvv~-~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~l 204 (1974)
+.++..++..+.+.. +.+...++.++..++..+|....+ +..++..+-..+.+.|..||..+...+..+.+..|.+ +
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~ 290 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-V 290 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-C
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-H
Confidence 356777777776543 678888899999999988864333 5678888888889999999999999999999999975 5
Q ss_pred hHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCC
Q 000166 205 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 284 (1974)
Q Consensus 205 k~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~k 284 (1974)
.+++ ..+-|..++- +.. .|. + ..... + ..++.. +.. ...++.|.+
T Consensus 291 ~~~l-~~li~~ll~~-------l~~--d~~-~-~~~~d-----~----~~~~~~--~~~-~~~~~~~~~----------- 335 (1230)
T 1u6g_C 291 YPHV-STIINICLKY-------LTY--DPN-Y-NYDDE-----D----EDENAM--DAD-GGDDDDQGS----------- 335 (1230)
T ss_dssp HHHH-HHHHHHHTTC-------CCC--C----------------------------------------------------
T ss_pred HHhH-HHHHHHHHHH-------hCC--CCC-C-CCccc-----c----cccccc--ccc-ccccchhhc-----------
Confidence 5654 5555554322 111 111 1 00000 0 000000 000 000000100
Q ss_pred CCchhhhhhhccCChHHHHHHHHHHHHhhhc-CCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc-----
Q 000166 285 LEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT----- 358 (1974)
Q Consensus 285 lpk~~f~~~l~s~KWkeRkEALe~L~~L~~~-pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~----- 358 (1974)
.+.|..-.+..|+.|+.|++.|..+... +.....-|..++..|...+.|.+-.|...+++++..+.+.++.
T Consensus 336 ---~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 412 (1230)
T 1u6g_C 336 ---DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL 412 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----
T ss_pred ---ccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccc
Confidence 0122233567899999999999888752 2111223667778888888899999999999999999987753
Q ss_pred --------------ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC-----ChhhhHHHHHHHhhcCCc--
Q 000166 359 --------------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----NLVDVVEDVKTSVKNKVP-- 417 (1974)
Q Consensus 359 --------------~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~-----~l~~~~e~i~~al~~KnP-- 417 (1974)
.+..|...+++.++..++|....||.++..+|..|+.. +. .++.+++.+...|+++++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~-~~~~l~~~l~~ll~~l~~~L~d~~~~~ 491 (1230)
T 1u6g_C 413 CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSSSS 491 (1230)
T ss_dssp --------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTTTGGGHHHHHHHHHHHTTCSSSCH
T ss_pred cCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-chhhhHHHHHHHHHHHHHHHcCCCCcc
Confidence 34567788888888889999999999999999999875 21 256788888899999886
Q ss_pred hhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh------hHHHHHhhcC---
Q 000166 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM------RPLERSIEKL--- 488 (1974)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge------~~l~~~l~~L--- 488 (1974)
.++.+++.++...+....+..+.+++..++|.++.+++|++..||..|..+++.+++.+|+ ..+.+|++.+
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence 9999999999999987766655567788999999999999999999999999999999997 2333333222
Q ss_pred ----------CHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCC
Q 000166 489 ----------DDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554 (1974)
Q Consensus 489 ----------d~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~ 554 (1974)
+..-|.....++ ...|.. . .+. -+...+.= .... ......
T Consensus 572 ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~-~--~~~----------------~~~~l~~L-~~~l--~~e~~r---- 625 (1230)
T 1u6g_C 572 TIKRLKAADIDQEVKERAISCMGQIICNLGDN-L--GSD----------------LPNTLQIF-LERL--KNEITR---- 625 (1230)
T ss_dssp HHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG-C--CTH----------------HHHHHHHH-HHHT--TSSSHH----
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCch-h--hhh----------------HHHHHHHH-HHHh--ccchhH----
Confidence 222222222222 111100 0 000 00000000 0000 000000
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc
Q 000166 555 KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN 634 (1974)
Q Consensus 555 ~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~ 634 (1974)
.++.. .-+.-..+. . +. +.+.-+..++ +.+.+.+.+.+|..|.++++.+...+.....
T Consensus 626 -------~~~~~-al~~i~~~~--~------~~-----~~~~~~~~i~-~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 626 -------LTTVK-ALTLIAGSP--L------KI-----DLRPVLGEGV-PILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp -------HHHHH-HHHHHTTCS--S------CC-----CCHHHHHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred -------HHHHH-HHHHHHhCc--c------cc-----chHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 00000 000000000 0 00 1111122222 3567888999999999999999988877432
Q ss_pred cchhHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhh
Q 000166 635 LDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713 (1974)
Q Consensus 635 ~~~~~~~Lvr~l~~~-PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~ 713 (1974)
.. ..+.+..+|... |.+.++++.+....++++..++...+.........+++.++..+....+...+.+.+..+....
T Consensus 684 ~~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l 762 (1230)
T 1u6g_C 684 SL-TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762 (1230)
T ss_dssp TC-CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHH
Confidence 21 234555555433 5678999999999999999988654332222344555666655555443333333333222211
Q ss_pred ----c----hHhHHHHHHH-----------------------h----------------hhhcCChhhHHHHHHHHHHHH
Q 000166 714 ----G----PGFIFERLYK-----------------------I----------------MKDHKNPKVLSEGILWMVSAV 746 (1974)
Q Consensus 714 ----~----p~~V~~~l~~-----------------------~----------------~~~~KnPKv~ae~l~wl~~ai 746 (1974)
. ..-++..++. . +...|+|......-.|...++
T Consensus 763 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 842 (1230)
T 1u6g_C 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSL 842 (1230)
T ss_dssp HTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 0 1111111111 1 111222321111112222445
Q ss_pred HHhccCccch---HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000166 747 EDFGVSHLKL---KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1974)
Q Consensus 747 ~eFG~~~l~~---K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~ 823 (1974)
.++|.. .++ ..+++.+.++ |.++|+.||++|...||.+.. | .+..| -|.+++.|+.+ +
T Consensus 843 ~~~g~~-~~~~~~~~l~~~~~~~-l~~~~~~Vr~aAa~aLg~l~~--~-~~~~~----lp~ll~~l~~~---------~- 903 (1230)
T 1u6g_C 843 GEVGHH-IDLSGQLELKSVILEA-FSSPSEEVKSAASYALGSISV--G-NLPEY----LPFVLQEITSQ---------P- 903 (1230)
T ss_dssp HHHHHH-SCCCSCTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHH--H-THHHH----HHHHHHHHHSC---------G-
T ss_pred HHhccc-CCCcccccHHHHHHHH-hCCCCHHHHHHHHHHhHHHhc--c-CHHHH----HHHHHHHHhcc---------c-
Confidence 555542 222 3577788886 999999999999999999873 1 22223 35666666532 0
Q ss_pred Cccccccc--cC-cCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHH
Q 000166 824 PKKTVRAS--ES-TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900 (1974)
Q Consensus 824 p~R~~r~~--~~-~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aL 900 (1974)
..|...-. .+ ... .+.++.-| ...+|.+.|+..+++.+|.+|..+-+-+..++.-. ..++++.|
T Consensus 904 ~~~~~~l~al~e~i~~--~~~~~~~~---~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~--------~~~l~p~l 970 (1230)
T 1u6g_C 904 KRQYLLLHSLKEIISS--ASVVGLKP---YVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRL 970 (1230)
T ss_dssp GGHHHHHHHHHHHHHS--SCSTTTHH---HHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHH
T ss_pred hhhHHHHHHHHHHHhc--CChhhHHh---hHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC--------hHHHHHHH
Confidence 01110000 00 000 00111111 13457778888899999999999999999888521 26799999
Q ss_pred hhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 901 k~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
..++.|+|..+-..++.++..+...+|+.+..|.+.++++++..|.|....||.++..||..++...+ +.+.+.+..
T Consensus 971 ~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~-~~~~~~l~~-- 1047 (1230)
T 1u6g_C 971 KGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP-SLIRDLLDT-- 1047 (1230)
T ss_dssp TTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG-GGTGGGHHH--
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCh-HhHHHHHHH--
Confidence 99999999999888988888888888999999999999999999999999999999999999997765 222222111
Q ss_pred hcccCCcchHHHHHHHHHHHhccCCCCcchhhhhh-hHhhhccCCChHHHHHHHHHHHHHHHhc
Q 000166 981 TDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1974)
Q Consensus 981 ~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~-p~~~~L~Dr~~dVRkaA~~~L~~~m~~~ 1043 (1974)
++..|... ....+++...+. --|.+..|++.+|||+|.++|.+++.+.
T Consensus 1048 ------------~lp~l~~~---~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~ 1096 (1230)
T 1u6g_C 1048 ------------VLPHLYNE---TKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSC 1096 (1230)
T ss_dssp ------------HHHHHHHT---TSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSS
T ss_pred ------------HHHHHHHH---hcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHH
Confidence 22222111 111111111000 1345566777777777777777777664
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.93 E-value=1.4e-21 Score=273.36 Aligned_cols=869 Identities=12% Similarity=0.124 Sum_probs=506.4
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCC--CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~--~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~ 366 (1974)
.+.+++.++..-.|..|++.|...+..+.+.- .....++..|-+.+.|.|..|-..|+.|++.++.+++. +|...
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 57888999999999999999998776554432 23557889999999999999999999999999998876 67888
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----------hhhhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhCC
Q 000166 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----------LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 367 ~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~----------l~~~~e~i~~al~-~KnP~vk~etl~~L~r~l~~~~ 435 (1974)
+++.+++.+.|.+..||.++..+|..++...... ..++++.+..+++ +.++.+|..++..|...+...+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999998761111 4567777888888 6899999999999999987554
Q ss_pred hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000166 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (1974)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~ 515 (1974)
.. +.+.+..+++.++.+++|+++.||++|..+|+.+....|+..+..++ ..+.+.+..... + .
T Consensus 167 ~~-l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l--------~~l~~~L~~~~~------~--~ 229 (1230)
T 1u6g_C 167 GL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLI--------EHLLSELSKNDS------M--S 229 (1230)
T ss_dssp SS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHH--------HHHHHHHHHTCS------S--C
T ss_pred hH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH--------HHHHHHhccCCc------h--h
Confidence 32 22345778999999999999999999999999999888865322221 123333322100 0 0
Q ss_pred ccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHH
Q 000166 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (1974)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e 595 (1974)
. + .. .=++-
T Consensus 230 ~---r---------------~~-----------------------------------------------------a~~~l 238 (1230)
T 1u6g_C 230 T---T---------------RT-----------------------------------------------------YIQCI 238 (1230)
T ss_dssp S---C---------------TT-----------------------------------------------------HHHHH
T ss_pred H---H---------------HH-----------------------------------------------------HHHHH
Confidence 0 0 00 00000
Q ss_pred HHHhccCc-------HhHHHhhhhccHHHHHHHHHHHHHHHHhhhc-c-chhHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 000166 596 SRLGSLIP-------ADTVGQLKSAVWKERLEAISSLRQQVEAVQN-L-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666 (1974)
Q Consensus 596 ~~~~~l~~-------~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~-~-~~~~~~Lvr~l~~~PgwkesNfqV~~k~lei 666 (1974)
..+...++ ++++..+ .+.+...++ . ....+.+-.+....+ +.--..+...+..
T Consensus 239 ~~l~~~~~~~~~~~l~~l~~~l---------------l~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~l~~li~~ 300 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYLEKIIPLV---------------VKFCNVDDDELREYCIQAFESFVRRCP---KEVYPHVSTIINI 300 (1230)
T ss_dssp HHHHHHSSGGGTTSCTTHHHHH---------------HHHHSSCCTTTHHHHHHHHHHHHHCTT---CCCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH---------------HHHhcCCCHHHHHHHHHHHHHHHHHCh---HHHHHhHHHHHHH
Confidence 00000111 1122211 111111100 0 001122222222111 1101122222222
Q ss_pred HHHHHHhcCCCCcc-chhhh--cc-------------ch-hhccccchhhhHHHHHHHHHHHhhch--HhHHHHHHHhh-
Q 000166 667 INYLAATATKFPKK-CVVLC--LL-------------GI-SERVADIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIM- 726 (1974)
Q Consensus 667 l~~la~~~~~fs~~-~~~~~--l~-------------~l-veKlgD~K~r~~a~e~L~~~aE~~~p--~~V~~~l~~~~- 726 (1974)
+.......+.+... ..... +. .. .+.-..-++|..+.++|..++...+. ..+++.+++.+
T Consensus 301 ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~ 380 (1230)
T 1u6g_C 301 CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380 (1230)
T ss_dssp HTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHH
T ss_pred HHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 21111000000000 00000 00 00 00001135789999999999985542 23333333333
Q ss_pred --hhcCChhhHHHHHHHHHHHHHHhccCc--------------------cchHhHHHHHhhhcCCCccHHHHHHHHHHHH
Q 000166 727 --KDHKNPKVLSEGILWMVSAVEDFGVSH--------------------LKLKDLIDFCKDTGLQSSAAATRNATIKLLG 784 (1974)
Q Consensus 727 --~~~KnPKv~ae~l~wl~~ai~eFG~~~--------------------l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~ 784 (1974)
+...++.|+.+++..+..++...|... --+..+++.+... |.+.++.||.+++.+++
T Consensus 381 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~-l~~~~~~vr~~~~~~L~ 459 (1230)
T 1u6g_C 381 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ-MKEKSVKTRQCCFNMLT 459 (1230)
T ss_dssp STTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH-TTCSCHHHHHHHHHHHH
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHH-hccCCHHHHHHHHHHHH
Confidence 356789999999999999998876410 1235677777776 99999999999999999
Q ss_pred HHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCC
Q 000166 785 ALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (1974)
Q Consensus 785 ~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d 864 (1974)
.+-...+..+.++++.+= +.+++.+.|
T Consensus 460 ~l~~~~~~~l~~~l~~ll-----------------------------------------------------~~l~~~L~d 486 (1230)
T 1u6g_C 460 ELVNVLPGALTQHIPVLV-----------------------------------------------------PGIIFSLND 486 (1230)
T ss_dssp HHHHHSTTTTGGGHHHHH-----------------------------------------------------HHHHHHTTC
T ss_pred HHHHHchhhhHHHHHHHH-----------------------------------------------------HHHHHHHcC
Confidence 887765544544443333 334444555
Q ss_pred CCh--HHHHHHHHHHHHHHHHcccC-CCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcCh-------hHHhhh
Q 000166 865 PDW--KVRLESIEAVNKILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP-------AVEKSS 934 (1974)
Q Consensus 865 ~~W--K~RkEaLe~v~~il~~ankr-I~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~-------~~~k~~ 934 (1974)
++| .+|.+++..+..++...++. +.|- +..++..|-..+.|.|..+...|+.+++.++.++|+ .+.+|.
T Consensus 487 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~-l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 565 (1230)
T 1u6g_C 487 KSSSSNLKIDALSCLYVILCNHSPQVFHPH-VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 565 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHSSCGGGGHHH-HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHhCCHHHHHhH-HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 555 78999999999988633222 3332 367888888889999999989999999999999998 789999
Q ss_pred hhhhHHHHHHh--ccCchhHHHHHHHHHHHHHHhccc--hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--Cc
Q 000166 935 KGVLSDILKCL--GDNKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FP 1008 (1974)
Q Consensus 935 k~l~~~il~~l--~D~K~~vR~aa~~alda~~~~~gl--~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~--~~ 1008 (1974)
..++|.++..| .|....+|++++.|+...+..+|- ...++.+...|...-.+...|...+.-+..-...... ..
T Consensus 566 ~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~ 645 (1230)
T 1u6g_C 566 KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR 645 (1230)
T ss_dssp HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchH
Confidence 99999999999 888999999999999999999873 3334444444432111334577766555543322111 11
Q ss_pred c-hhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCH----HHHHHHhhccCch-------hHHHHHHHHHhccCCCCC
Q 000166 1009 D-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ----ETIEKNLKDIQGP-------ALALILERIKLNGASQVS 1076 (1974)
Q Consensus 1009 ~-~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~----~~~~~~~~~Lk~~-------~~~~i~~~l~k~~~~~~~ 1076 (1974)
. ...++..+...+.|.+..+|.+|-.+|..++...|. +.+.+.+..+-|. ....+..++..--...
T Consensus 646 ~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~-- 723 (1230)
T 1u6g_C 646 PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY-- 723 (1230)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC--
Confidence 2 233444577789999999999999999999999874 5555555544222 2223333333321000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcc-cCC---CChHHH-Hhhhhcccc
Q 000166 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN-VKD---SNKEDR-ERMVVRRFK 1151 (1974)
Q Consensus 1077 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~K~~R-~~~~~~kw~ 1151 (1974)
+. ..... .+. -. ..++. +.. .+..-+ .-.......
T Consensus 724 --~~-------------~~~~~---------------~~~--------~l--~~~~~~l~~~~~~~~~~~~l~~~~~~l~ 763 (1230)
T 1u6g_C 724 --PS-------------SLSKI---------------SGS--------IL--NELIGLVRSPLLQGGALSAMLDFFQALV 763 (1230)
T ss_dssp --GG-------------GGGGT---------------TTT--------TH--HHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred --ch-------------hHHHh---------------HHh--------HH--HHHHHHHcCcccchHHHHHHHHHHHHHH
Confidence 00 00000 000 00 00000 000 000000 000000000
Q ss_pred ccCCC----hhHHHHH----------------HHHHHHhhhHH----------HHHhhc----c--cCHH-HHH--HHHH
Q 000166 1152 FEDPR----IEQIQEL----------------ENDMMKYFRED----------LHRRLL----S--TDFK-KQV--DGLE 1192 (1974)
Q Consensus 1152 f~~pr----~e~ve~L----------------~~q~~~~~~~~----------l~~~Lf----~--~Dfk-~~l--~al~ 1192 (1974)
-..+. ++.++.| ......|+..- +...+. + .+.. .++ .++.
T Consensus 764 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 843 (1230)
T 1u6g_C 764 VTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLG 843 (1230)
T ss_dssp TTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 01111 1222222 11111111110 000000 0 0111 111 1111
Q ss_pred HHHHh--cCCChhhhhHhHHHHHHHHHHhccccchHHHHHH-----------h-hhhHHHHHHHHhc-------------
Q 000166 1193 MLQKA--LPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKV-----------L-EFLPELFDTLRDE------------- 1245 (1974)
Q Consensus 1193 ~l~~~--l~~~~~~~i~~lDlllkw~tlr~~dtN~~vl~k~-----------L-e~l~~l~~~l~~~------------- 1245 (1974)
.+-.. +... + | ++.-+.--|.++|..|-... + .|+..++..+...
T Consensus 844 ~~g~~~~~~~~-~------~-l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e 915 (1230)
T 1u6g_C 844 EVGHHIDLSGQ-L------E-LKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKE 915 (1230)
T ss_dssp HHHHHSCCCSC-T------H-HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred HhcccCCCccc-c------c-HHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 11111 1100 0 1 11222223445555442211 0 1333333333221
Q ss_pred -----CCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHH
Q 000166 1246 -----GYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320 (1974)
Q Consensus 1246 -----~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~ 1320 (1974)
+-.....-+..++|.|+..+|+.-+.+|..+-+++-.++.+.| ..++|.|.+.+++.|+-+|.-|+.-+.+++.
T Consensus 916 ~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~-~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 916 IISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLISGSSYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCC
T ss_pred HHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 1111122346688999999998888899999999999999976 6799999999999999999999888877776
Q ss_pred hhcCccccccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhcc
Q 000166 1321 HHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1974)
Q Consensus 1321 ~~G~~v~~~~Ka-l~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~vg~ 1372 (1974)
..|-.+..-.+. ++.+-++++|.|+.||.+|+.+|..+-...|+-++.+++.
T Consensus 995 ~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~ 1047 (1230)
T 1u6g_C 995 DHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1047 (1230)
T ss_dssp SSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHH
T ss_pred cCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHH
Confidence 554332111122 3556678899999999999999999877777665555433
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.89 E-value=1.6e-20 Score=239.92 Aligned_cols=554 Identities=18% Similarity=0.182 Sum_probs=373.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCC-CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~-~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
.+.+.+.+.+|+.|..|+..|..+... +.+ ....+|+..|...+ |.+..|...++++++.++..++.. .|...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 688899999999999999999876531 111 12457888888777 667788888999998887766542 477888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh----hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~----~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~ 443 (1974)
+|.+..-+.+....||+++.++|..++.. .+-+. +++-+....++.++.+|...+..+.......+... .
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~----~ 162 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----K 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----H
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH----H
Confidence 88887777899999999999999999875 34332 33444455578889999999988887776655332 3
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000166 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1974)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1974)
..++|.+..+++|.++.||.+|+.+|+.+...+|.+...+ .+= ..+.+.+...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~---~l~----~~l~~~~~d~-------------------- 215 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKS---EII----PMFSNLASDE-------------------- 215 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHH---THH----HHHHHHHTCS--------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHH---HHH----HHHHHHhcCC--------------------
Confidence 6788999999999999999999999999999999643211 100 0112222110
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000166 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1974)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~ 603 (1974)
...++..+....+. - . ..++.++. .+.+-
T Consensus 216 -------~~~vr~~a~~~l~~-----------------------------l---~--------~~~~~~~~----~~~~~ 244 (588)
T 1b3u_A 216 -------QDSVRLLAVEACVN-----------------------------I---A--------QLLPQEDL----EALVM 244 (588)
T ss_dssp -------CHHHHTTHHHHHHH-----------------------------H---H--------HHSCHHHH----HHHTH
T ss_pred -------cHHHHHHHHHHHHH-----------------------------H---H--------HhCCHHHH----HHHHH
Confidence 00011110000000 0 0 00011221 12334
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchh
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~ 683 (1974)
+-+...+.+.+|..|..+.+.+.......+.. ...+.++..+.. ..+|.+.
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~--~l~d~~~-------------------------- 295 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQN--LMKDCEA-------------------------- 295 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHH--HHTCSSH--------------------------
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc-cchhHHHHHHHH--HhCCCcH--------------------------
Confidence 45667778888999988888777555443211 001111211111 1233333
Q ss_pred hhccchhhccccchhhhHHHHHHHHHHHhhchH--------hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc
Q 000166 684 LCLLGISERVADIKTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755 (1974)
Q Consensus 684 ~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~p~--------~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~ 755 (1974)
-+|..+..+|-.+++..++. .++..+... .+.++|+|+..++.++..+..-+|-.. -
T Consensus 296 -------------~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~-~ 360 (588)
T 1b3u_A 296 -------------EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN-T 360 (588)
T ss_dssp -------------HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH-H
T ss_pred -------------HHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHhH-H
Confidence 34555555555555554433 223333333 467889999999988888887777532 2
Q ss_pred hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcC
Q 000166 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (1974)
Q Consensus 756 ~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~ 835 (1974)
...++..+... |.+.++.||.+|+..++.+-..+|+.. +.
T Consensus 361 ~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~------------------------------------- 400 (588)
T 1b3u_A 361 IEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--LS------------------------------------- 400 (588)
T ss_dssp HHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--HH-------------------------------------
T ss_pred HHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--HH-------------------------------------
Confidence 34566667776 888999999999998888887766421 00
Q ss_pred CCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHH
Q 000166 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915 (1974)
Q Consensus 836 ~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~a 915 (1974)
..+-+.+.+-+.|++|++|..+++.+..+...-.... ....+++.|...|.|.+..|...|
T Consensus 401 ----------------~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 401 ----------------QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp ----------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred ----------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHHHHH
Confidence 0122334455678899999999999999986432221 114688888889999999999999
Q ss_pred HHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHHHHHHHhcccCCcchHH
Q 000166 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPYVTTALTDAKLGAEGRK 991 (1974)
Q Consensus 916 l~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~i~~~L~~~~~~p~~R~ 991 (1974)
+.+++.++..+|+.+ +...++|.++..+.|....+|.+++.++..+...+|.+. +++.+...|.++ +++.|.
T Consensus 462 ~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~Vr~ 537 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANVRF 537 (588)
T ss_dssp HHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHHHH
T ss_pred HHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--CchHHH
Confidence 999999999999865 466789999999999999999999999999999988654 455555555554 588999
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhhHh-hhccCCChHHHHHHHHHHHHH
Q 000166 992 DLFDWLSKQLTGLSGFPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~-~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.++..|.+....... ......+.|++ ..++|++.+||.+|..+|..+
T Consensus 538 ~a~~~l~~l~~~~~~-~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 538 NVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhch-hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999888877655432 11224555644 456999999999999998754
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.88 E-value=6.1e-18 Score=227.98 Aligned_cols=752 Identities=13% Similarity=0.153 Sum_probs=472.3
Q ss_pred CCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhh
Q 000166 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAK 101 (1974)
Q Consensus 22 hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK 101 (1974)
+-+--.|.+|.+.|.+.- .+|.|..|...+-.-..+.+..+...|.-.+..++...-..........+...+-.
T Consensus 24 s~d~~~r~~Ae~~L~~~~------~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~ 97 (852)
T 4fdd_A 24 SPDTTIQRTVQQKLEQLN------QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN 97 (852)
T ss_dssp CSCHHHHHHHHHHHHHHT------TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHH------hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 345566666666665331 23444433221111124556666665555554444321110010111122222222
Q ss_pred hhc-CChhhHHHHHHHHHHHHhhchh---hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc------cChhHHHh
Q 000166 102 CLT-GRPKTVEKAQAVFMLWVELEAV---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI------IPPKRILK 171 (1974)
Q Consensus 102 ~L~-~r~ktk~~a~e~~l~~vE~e~~---~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kv------v~~K~ilk 171 (1974)
+|+ ..+..+..+.+++-..+..+.. ..++..|...+.+.++.+.-+++.++..+.+.++... -....++.
T Consensus 98 ~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~ 177 (852)
T 4fdd_A 98 NIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHH
Confidence 343 2345555555555555544322 2456666666666666666666666666666665421 01344555
Q ss_pred hchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcc
Q 000166 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELIS 251 (1974)
Q Consensus 172 ~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~ 251 (1974)
.+-.+|.+.+..||.+|...+..+....+ ..+...
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~~-----~~~~~~---------------------------------------- 212 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISRT-----QALMLH---------------------------------------- 212 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTTC-----HHHHTS----------------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccc-----HHHHHH----------------------------------------
Confidence 55556666666666666554332111110 000000
Q ss_pred cCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHH
Q 000166 252 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTL 330 (1974)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~dy~dL~~~L 330 (1974)
++ ++ + ..+...+.+..+..|+.+++.|..+.. .++.-.....+++..+
T Consensus 213 ------------------------~~--~~---l--~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l 261 (852)
T 4fdd_A 213 ------------------------ID--SF---I--ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYM 261 (852)
T ss_dssp ------------------------HH--HH---H--HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHH
T ss_pred ------------------------HH--HH---H--HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 00 01 1 124444566778899999999988765 3433333456889999
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHH--hccccccchhhhHHHHHHHh-----------cc-----------CCHHHHHHH
Q 000166 331 KKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKL-----------KE-----------KKPTVAESL 386 (1974)
Q Consensus 331 kk~l~DsNv~vv~~A~~~i~~LA~g--Lr~~F~~y~~~~l~~lLekl-----------KE-----------KK~~V~eA~ 386 (1974)
-+.+.|.+-.|...|++++..+++. .++.+.+|...++|.++..+ .| ..-+||.++
T Consensus 262 ~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a 341 (852)
T 4fdd_A 262 LQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCS 341 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHH
T ss_pred HHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHH
Confidence 9999998999999999999999873 45557889999999999998 45 566899999
Q ss_pred HHHHHHHHHhc-CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHH
Q 000166 387 TQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAA 465 (1974)
Q Consensus 387 ~~aLda~~~~~-~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA 465 (1974)
..+|+.++... ..-+..+++-+...+.+.+|.+|..++..|....+.... .+.+.+..++|.++.+++|+++.||.+|
T Consensus 342 ~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~Vr~~a 420 (852)
T 4fdd_A 342 AAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKALVRSIT 420 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999998751 111334556666778899999999999999877665543 3345668899999999999999999999
Q ss_pred HHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCC
Q 000166 466 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK 545 (1974)
Q Consensus 466 ~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 545 (1974)
+.+++.+...++......+
T Consensus 421 ~~~l~~l~~~~~~~~~~~~------------------------------------------------------------- 439 (852)
T 4fdd_A 421 CWTLSRYAHWVVSQPPDTY------------------------------------------------------------- 439 (852)
T ss_dssp HHHHHHTHHHHHHSCTTTT-------------------------------------------------------------
T ss_pred HHHHHHHHHHhccchHHHH-------------------------------------------------------------
Confidence 9999976655432110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHH
Q 000166 546 RPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSL 625 (1974)
Q Consensus 546 ~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l 625 (1974)
.+++- +.++..|.+.+|..|-+|...+
T Consensus 440 ---------------------------------------------~~~ll--------~~L~~~L~d~~~~vr~~a~~aL 466 (852)
T 4fdd_A 440 ---------------------------------------------LKPLM--------TELLKRILDSNKRVQEAACSAF 466 (852)
T ss_dssp ---------------------------------------------HHHHH--------HHHHHHHTCSSHHHHHHHHHHH
T ss_pred ---------------------------------------------HHHHH--------HHHHHHHhCCCHHHHHHHHHHH
Confidence 01111 2344556666777787777777
Q ss_pred HHHHHhh-hccchhHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHHhcC-CCC-ccchhhhccchhhcc---cc--c
Q 000166 626 RQQVEAV-QNLDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATAT-KFP-KKCVVLCLLGISERV---AD--I 696 (1974)
Q Consensus 626 ~~~v~~~-~~~~~~~~~Lvr~l~~~-PgwkesNfqV~~k~leil~~la~~~~-~fs-~~~~~~~l~~lveKl---gD--~ 696 (1974)
...++.. .......+-++..|... ..+...|. ...++++..++...+ .+. ......+++.++++. .| .
T Consensus 467 ~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~---~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~ 543 (852)
T 4fdd_A 467 ATLEEEACTELVPYLAYILDTLVFAFSKYQHKNL---LILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK 543 (852)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCT
T ss_pred HHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccH
Confidence 7666552 22233333333322211 11233333 345566666654332 222 234456677776432 22 3
Q ss_pred hhhhHHHHHHHHHHHhhchHhH--HHHHHH----hhh----------------hcCChhhHHHHHHHHHHHHHHhccCcc
Q 000166 697 KTRAHAMKCLTTFSEAVGPGFI--FERLYK----IMK----------------DHKNPKVLSEGILWMVSAVEDFGVSHL 754 (1974)
Q Consensus 697 K~r~~a~e~L~~~aE~~~p~~V--~~~l~~----~~~----------------~~KnPKv~ae~l~wl~~ai~eFG~~~l 754 (1974)
..+ .+.+++..++...+..|+ +..+++ .+. +.....++..++..++.+++.+|-...
T Consensus 544 ~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~ 622 (852)
T 4fdd_A 544 DLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622 (852)
T ss_dssp THH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHH
Confidence 343 688999999998887664 333333 221 112456788889999999999985433
Q ss_pred ch---HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 000166 755 KL---KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1974)
Q Consensus 755 ~~---K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~ 831 (1974)
+. ..++..+..+ +.+.++.||.+|..+++.+-++.|..+..|+..+-|.+.
T Consensus 623 ~~~~~~~~~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~------------------------- 676 (852)
T 4fdd_A 623 QLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG------------------------- 676 (852)
T ss_dssp HHHHTCCHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH-------------------------
T ss_pred HHhcCCcHHHHHHHH-hCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------
Confidence 22 3677888886 999999999999999999999999999988866544443
Q ss_pred cCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch--hH
Q 000166 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NK 909 (1974)
Q Consensus 832 ~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~Ds--Nk 909 (1974)
+.+++..+.+|+.|...+..|+......++|-. ..++..|-..|.+. ++
T Consensus 677 ----------------------------~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~-~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 677 ----------------------------TNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp ----------------------------HTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGT-HHHHHHHHHHHTCSSCCH
T ss_pred ----------------------------HHcCccchHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHhCCCCCCc
Confidence 333445678899999999999876555688875 88888888888654 67
Q ss_pred hHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchh-HHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcc
Q 000166 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH-MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 988 (1974)
Q Consensus 910 ~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~-vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~ 988 (1974)
.+...|..++|+++...+..+.+|...+++.++..|.+.... .|+.+..++..++..-+ ..+++
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p-~~~~~-------------- 792 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP-SGVIQ-------------- 792 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG-GGTGG--------------
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhCh-HhHHH--------------
Confidence 899999999999999943445689999999999999764444 68888888888766532 11111
Q ss_pred hHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHH
Q 000166 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065 (1974)
Q Consensus 989 ~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~ 1065 (1974)
.+.|+-.. ++.-.+..+|.+..=..+|-.+=.++|.+.....+..+.|..+..+.+
T Consensus 793 ----~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 793 ----DFIFFCDA-----------------VASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp ----GHHHHHHH-----------------HHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred ----HHHHHHHH-----------------HHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHH
Confidence 11111111 112234467777777788877777888888888888888777666554
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.87 E-value=6.5e-18 Score=226.15 Aligned_cols=704 Identities=13% Similarity=0.143 Sum_probs=456.5
Q ss_pred cCCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCC-CHHHHHHHHHHHHHHHHHcChh---hhhhhhHHH
Q 000166 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKEVC 95 (1974)
Q Consensus 20 L~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~Ds-N~~aqEk~leal~~~l~~a~~~---~~~~~~~v~ 95 (1974)
|.+.+=+.|..+.+-+...+...... ..|..+.+.+-..+.+. |..+.+.++.++..+++..+.. .......++
T Consensus 104 l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll 181 (861)
T 2bpt_A 104 LVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred HCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence 45556666777766666655432110 02333333344556777 9999999999998888764432 123444555
Q ss_pred HHHHhhhhc-C--ChhhHHHHHHHHHHHHhh-c-h------hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCcc
Q 000166 96 DAIAAKCLT-G--RPKTVEKAQAVFMLWVEL-E-A------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKII 164 (1974)
Q Consensus 96 ~~lveK~L~-~--r~ktk~~a~e~~l~~vE~-e-~------~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv 164 (1974)
+.+ .+++. . .+..+..|.+|+..+++. + . ...+++.+...+.+..+++...++.++..++..++....
T Consensus 182 ~~l-~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 260 (861)
T 2bpt_A 182 IAI-VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260 (861)
T ss_dssp HHH-HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred HHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 34554 3 567888899998876653 1 1 124677777788889999999999999999999985433
Q ss_pred C-hh-HHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcc---hhhh
Q 000166 165 P-PK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR---KIRA 239 (1974)
Q Consensus 165 ~-~K-~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R---~~Rs 239 (1974)
+ +. .|+..+-..+.+.|..||..+..++..+...... . . .+. . +. + ..|.+ +++.
T Consensus 261 ~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~-~-~~~-----------~--~~--~-~~~~~~~~~~~~ 320 (861)
T 2bpt_A 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID--I-A-YEL-----------A--QF--P-QSPLQSYNFALS 320 (861)
T ss_dssp HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--H-H-HHH-----------H--HC--T-TCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--h-h-hhh-----------h--hc--c-CCchhhHHHHHH
Confidence 2 34 6677777778899999999999988777665421 0 0 000 0 00 0 11111 1110
Q ss_pred HHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCC
Q 000166 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIA 319 (1974)
Q Consensus 240 ~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~ 319 (1974)
.-. .-....-..-... + + |. .+..|..|+.+.+.|..+...-.
T Consensus 321 ~~~--~il~~ll~~l~~~-------~--~--d~----------------------~d~~~~~r~~a~~~L~~l~~~~~-- 363 (861)
T 2bpt_A 321 SIK--DVVPNLLNLLTRQ-------N--E--DP----------------------EDDDWNVSMSAGACLQLFAQNCG-- 363 (861)
T ss_dssp HHH--HHHHHHHHHTTCC-------C--C--C-----------------------CCCCCHHHHHHHHHHHHHHHHHG--
T ss_pred HHH--HHHHHHHHHHHhc-------c--c--cc----------------------ccccCcHHHHHHHHHHHHHHHcc--
Confidence 000 0000000000000 0 0 00 01348999999999887764211
Q ss_pred CCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc-cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-
Q 000166 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG- 397 (1974)
Q Consensus 320 ~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr-~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~- 397 (1974)
..-...++..+...+.|.|..+-..|+.+++.|+.+.+ ..+.+|...++|.++..++|..+.||.++..+|-.++...
T Consensus 364 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 22356888999999999999999999999999999987 7788999999999999999999999999988888887651
Q ss_pred -----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC---hhHHhHhhhhhHHHHHhhhC--CCCHHHHHHHHH
Q 000166 398 -----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAAFS 467 (1974)
Q Consensus 398 -----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~---~~~~~~~~k~~~~~l~k~l~--Ds~~~VR~aA~~ 467 (1974)
...+..+++.+...+++. |.+|..++.-|....+... +..+.+.+..+++.++++++ |.++.||.++++
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 123677888888889876 9999988877777766543 23444666888999999998 555899999999
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000166 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1974)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p 547 (1974)
+++.+....|++ +.+++..+-+.-...+...+.-.
T Consensus 523 al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~-------------------------------------------- 557 (861)
T 2bpt_A 523 ALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVD-------------------------------------------- 557 (861)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSC--------------------------------------------
T ss_pred HHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhh--------------------------------------------
Confidence 999999999975 55555543332222222211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH
Q 000166 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (1974)
Q Consensus 548 ~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~ 627 (1974)
..-.+.++-+ .....|..+++
T Consensus 558 --------------------------------------~~i~~~~~~~-----------------~~~~~~~~~~~---- 578 (861)
T 2bpt_A 558 --------------------------------------ENQLTLEDAQ-----------------SLQELQSNILT---- 578 (861)
T ss_dssp --------------------------------------GGGCCHHHHH-----------------HHHHHHHHHHH----
T ss_pred --------------------------------------cccCChhhHH-----------------HHHHHHHHHHH----
Confidence 0000100000 00011111111
Q ss_pred HHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHH
Q 000166 628 QVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLT 707 (1974)
Q Consensus 628 ~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~ 707 (1974)
. ...+++.+.. .+. ......+..+..+.... . .| .+++.+..++.
T Consensus 579 ~----------l~~l~~~~~~--~~~----~~~~~l~~~l~~~l~~~-~-----------------~~-~v~~~~~~~l~ 623 (861)
T 2bpt_A 579 V----------LAAVIRKSPS--SVE----PVADMLMGLFFRLLEKK-D-----------------SA-FIEDDVFYAIS 623 (861)
T ss_dssp H----------HHHHHHHCGG--GTG----GGHHHHHHHHHHHHHST-T-----------------GG-GTHHHHHHHHH
T ss_pred H----------HHHHHHHhhh--hhH----HHHHHHHHHHHHHHccC-C-----------------CC-cHHHHHHHHHH
Confidence 1 1112222211 111 11222333222222210 0 01 56777888888
Q ss_pred HHHHhhchHhH--HH----HHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCcc--HHHHHH
Q 000166 708 TFSEAVGPGFI--FE----RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSA--AATRNA 778 (1974)
Q Consensus 708 ~~aE~~~p~~V--~~----~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~sN--~~VR~a 778 (1974)
.+++..+..|. +. .++..+ +++++.++..++..+..+.+.+|-...+ +..++..+-.. |++.| +.||..
T Consensus 624 ~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~vr~~ 701 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARRELKPA 701 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCTTHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccHhhhHH
Confidence 88887776543 33 444443 6799999999999999999998853211 34566666665 77766 999999
Q ss_pred HHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHH
Q 000166 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 858 (1974)
Q Consensus 779 Ai~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l 858 (1974)
++.+++.+-..+|+.+.+|+..+-|.++..++. .+ + + + .++.
T Consensus 702 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~----~~--~---~----------------~-------------d~d~ 743 (861)
T 2bpt_A 702 VLSVFGDIASNIGADFIPYLNDIMALCVAAQNT----KP--E---N----------------G-------------TLEA 743 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC----CC--S---S----------------S-------------SHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc----CC--C---C----------------C-------------ChHH
Confidence 999999999999999999998888877765531 00 0 0 0 0111
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHcc---cCCCCCCccchHHHHhhhccch----hHhHHHHHHHHHHHHHHhc-ChhH
Q 000166 859 VKSLESPDWKVRLESIEAVNKILEEAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM-GPAV 930 (1974)
Q Consensus 859 ~~~l~d~~WK~RkEaLe~v~~il~~an---krI~p~~~geL~~aLk~Rl~Ds----Nk~lv~~al~ii~~lA~am-G~~~ 930 (1974)
.+-.+++|..+++.+..|+...+ ..+.|-. .+++..|...+.|. +..+...|+.+++.++.++ |+.|
T Consensus 744 ----~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~-~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 744 ----LDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYV-GTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGH-HHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchH
Confidence 01136899999999999997543 3355543 77888888888885 8899999999999999999 9999
Q ss_pred Hhhhh-hhhHHHHHHhcc---CchhHHHHHHHHHHHHHHhcc
Q 000166 931 EKSSK-GVLSDILKCLGD---NKKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 931 ~k~~k-~l~~~il~~l~D---~K~~vR~aa~~alda~~~~~g 968 (1974)
.+|.. .++|.+++.|.. ....+++.+.=|+.....+++
T Consensus 819 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~~ 860 (861)
T 2bpt_A 819 KQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp GGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999 899999999883 556678888777776655443
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.87 E-value=1.7e-17 Score=222.10 Aligned_cols=726 Identities=11% Similarity=0.098 Sum_probs=463.9
Q ss_pred CCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCC-CCHHHHHHHHHHHHHHHHHcCh----------h--hh
Q 000166 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADA----------D--AG 88 (1974)
Q Consensus 22 hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~D-sN~~aqEk~leal~~~l~~a~~----------~--~~ 88 (1974)
+.+=-.|..|-+.|.+.... ..|.|..+ ++.-+..+ .+..+...|...+..++..... . ..
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~--l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~ 89 (861)
T 2bpt_A 16 SPDQNIRLTSETQLKKLSND----NFLQFAGL--SSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVS 89 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHH----CHHHHHHH--HHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHHHHhh----CHHHHHHH--HHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCC
Confidence 34456788888888764321 12344322 22222222 3566666655555544321100 0 00
Q ss_pred -hhhhHHHHHHHhhhhc-CChhhHHHHHHHHHHHHhhchh----hhHHHHHHHHhhcc-CchhHHHHHHHHHHHHHhhCC
Q 000166 89 -RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQALSEFGA 161 (1974)
Q Consensus 89 -~~~~~v~~~lveK~L~-~r~ktk~~a~e~~l~~vE~e~~----~~v~e~ll~~~~~K-~PKvvaaai~~l~~~l~~FG~ 161 (1974)
.....+-..+++ +|. ..+..+..+..++-..+..+-+ ..++..|...+.+. +|.+.-.++.++..+.++++.
T Consensus 90 ~~~~~~ik~~ll~-~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~ 168 (861)
T 2bpt_A 90 PEAKNQIKTNALT-ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP 168 (861)
T ss_dssp HHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh
Confidence 011122233444 333 3455566665665554444322 35677777777776 888888888888888888875
Q ss_pred Cc--c--ChhHHHhhchhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcc
Q 000166 162 KI--I--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235 (1974)
Q Consensus 162 kv--v--~~K~ilk~l~~lf~h~--dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R 235 (1974)
.. + ....|+..+-..+.+. +..||..+.+.+..+..|++. .+ +. .....
T Consensus 169 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-----~~-~~--~~~~~----------------- 223 (861)
T 2bpt_A 169 QSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN-----NM-ER--EGERN----------------- 223 (861)
T ss_dssp TSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH-----HH-TS--HHHHH-----------------
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH-----Hc-cC--hhHHH-----------------
Confidence 42 1 2455666666677776 788888887776665544431 11 00 00000
Q ss_pred hhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-
Q 000166 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS- 314 (1974)
Q Consensus 236 ~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~- 314 (1974)
.++ ..+.+.+.+..|+.|+.+++.|..+..
T Consensus 224 --------------------------------------------~ll-----~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 224 --------------------------------------------YLM-----QVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp --------------------------------------------HHH-----HHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHH-----HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 000 012233456779999999999988764
Q ss_pred cCCCCCCChh-HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc----------------cc-cccchhhhHHHHHHHhc
Q 000166 315 TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR----------------TH-FSGSSRFLLPVLLEKLK 376 (1974)
Q Consensus 315 ~pKi~~~dy~-dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr----------------~~-F~~y~~~~l~~lLeklK 376 (1974)
.++.-...+. +++..+-..+.|.+-.|...|++++..+++... ++ +.+|...++|.+++.++
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~ 334 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLT 334 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3332222234 677888888889999999999999999998752 11 34567889999999998
Q ss_pred c-------CCHHHHHHHHHHHHHHHHh-cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHH
Q 000166 377 E-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1974)
Q Consensus 377 E-------KK~~V~eA~~~aLda~~~~-~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1974)
+ -..++|.++..+|+.++.. +...+..+++.+...+.+.++.+|..++..|....+...+..+.+.+..++|
T Consensus 335 ~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~ 414 (861)
T 2bpt_A 335 RQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALP 414 (861)
T ss_dssp CCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred hcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 3568999999999999875 1112445666677778899999999998888877655443444566788999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH-HHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC
Q 000166 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (1974)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l-~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1974)
.++..+.|.++.||.+++.+++.+...+|.... .++
T Consensus 415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~------------------------------------------- 451 (861)
T 2bpt_A 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH------------------------------------------- 451 (861)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-------------------------------------------
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-------------------------------------------
Confidence 999999999999999999999998887764200 000
Q ss_pred CcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH
Q 000166 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607 (1974)
Q Consensus 528 ~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~ 607 (1974)
.+++- +.++
T Consensus 452 ---------------------------------------------------------------~~~~l--------~~l~ 460 (861)
T 2bpt_A 452 ---------------------------------------------------------------LPGVV--------QACL 460 (861)
T ss_dssp ---------------------------------------------------------------HHHHH--------HHHH
T ss_pred ---------------------------------------------------------------HHHHH--------HHHH
Confidence 00111 1122
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh-----ccchhHH----HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCC
Q 000166 608 GQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVE----ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (1974)
Q Consensus 608 ~~L~s~~WK~RL~a~E~l~~~v~~~~-----~~~~~~~----~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs 678 (1974)
..|.+. +..|..+...+...++... ......+ .|++.+.. .|.+..|....++.+..++...+.-.
T Consensus 461 ~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~----~d~~~~vr~~a~~al~~l~~~~~~~~ 535 (861)
T 2bpt_A 461 IGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR----IDNEFNARASAFSALTTMVEYATDTV 535 (861)
T ss_dssp HHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC----SCCGGGHHHHHHHHHHHHHHHCCGGG
T ss_pred HHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC----cCcchHHHHHHHHHHHHHHHHcchhh
Confidence 333332 5555555555555444422 1122222 33333321 24556788888999998888654333
Q ss_pred ccchhhhccchhhcccc-----------------chhhhHHHHHHHHHHHhhchHh------HHHHHHHhhhhcCCh-hh
Q 000166 679 KKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDHKNP-KV 734 (1974)
Q Consensus 679 ~~~~~~~l~~lveKlgD-----------------~K~r~~a~e~L~~~aE~~~p~~------V~~~l~~~~~~~KnP-Kv 734 (1974)
...+..+++.+++.+.+ ..++..+.++|..+++..+..+ ++..++.. .+..++ .+
T Consensus 536 ~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~v 614 (861)
T 2bpt_A 536 AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL-LEKKDSAFI 614 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHH-HHSTTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HccCCCCcH
Confidence 33344566666666653 2356788889999999887643 33334444 356667 89
Q ss_pred HHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHH
Q 000166 735 LSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY 813 (1974)
Q Consensus 735 ~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF 813 (1974)
+.+++.+++.+...+|....+ +..+++.+... |.+.++.||..|+.+++.+-+.+|+.+.+|+..+=|.++..++.+
T Consensus 615 ~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~- 692 (861)
T 2bpt_A 615 EDDVFYAISALAASLGKGFEKYLETFSPYLLKA-LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP- 692 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc-
Confidence 999999999999988865332 46788888886 888999999999999999999999988888866666555444310
Q ss_pred hcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc
Q 000166 814 EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893 (1974)
Q Consensus 814 ~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ 893 (1974)
+.++.+|..++..+..|+...+..+.|-.
T Consensus 693 --------------------------------------------------~~~~~vr~~~~~~l~~l~~~~~~~~~~~l- 721 (861)
T 2bpt_A 693 --------------------------------------------------NARRELKPAVLSVFGDIASNIGADFIPYL- 721 (861)
T ss_dssp --------------------------------------------------TCCTTHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred --------------------------------------------------cccHhhhHHHHHHHHHHHHHhhhhHHHHH-
Confidence 01245678888888888865444444432
Q ss_pred cchHHHHhhhcc-----------chhHhHHHHHHHHHHHHHHhcC---hhHHhhhhhhhHHHHHHhccC----chhHHHH
Q 000166 894 GELFGGLRGRLY-----------DSNKNLVMATLITLGAVASAMG---PAVEKSSKGVLSDILKCLGDN----KKHMREC 955 (1974)
Q Consensus 894 geL~~aLk~Rl~-----------DsNk~lv~~al~ii~~lA~amG---~~~~k~~k~l~~~il~~l~D~----K~~vR~a 955 (1974)
..+++.|...+. |...++...++++++.++.++| ..|..|...+++.+...+.|. ...||.+
T Consensus 722 ~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~ 801 (861)
T 2bpt_A 722 NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRA 801 (861)
T ss_dssp HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 456666655554 2335677899999999999999 568889999999888888874 7899999
Q ss_pred HHHHHHHHHHhc-cch-------hhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000166 956 TLTVLDAWLAAV-HLD-------KMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1974)
Q Consensus 956 a~~alda~~~~~-gl~-------~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l 1001 (1974)
|..++..++... |-+ .+++.+...|........--.+.-.|..+.+
T Consensus 802 a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 802 AVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp HHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 999999999988 522 3344444444421111112356666665544
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.84 E-value=1.4e-16 Score=213.67 Aligned_cols=619 Identities=14% Similarity=0.112 Sum_probs=413.5
Q ss_pred hhhhhhccC--ChHHHHHHHHHHHHhhhc--CCCCCCChhHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHhcccccc
Q 000166 289 GFWEGVKAT--KWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSG 362 (1974)
Q Consensus 289 ~f~~~l~s~--KWkeRkEALe~L~~L~~~--pKi~~~dy~dL~~~Lkk~l~Ds--Nv~vv~~A~~~i~~LA~gLr~~F~~ 362 (1974)
.+...+.+. .+..|..+|+.|..+... +.........++..|...+.|. |..|-..|++|++.++..++.++..
T Consensus 132 ~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (876)
T 1qgr_A 132 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211 (876)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777 889999999998887653 1111233567888899999865 7889999999999999887776654
Q ss_pred ch--hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000166 363 SS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 363 y~--~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~----l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1974)
+. ..+++.+.+.+.+....||.++.++|..++....-. +. .+++-+...+++..+.+|..++.|+..+.+...
T Consensus 212 ~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~ 291 (876)
T 1qgr_A 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (876)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 32 247888888888889999999999999998751111 33 667777777889999999999999887765320
Q ss_pred --------------------hhHHhHhhhhhHHHHHhhhC-------CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000166 436 --------------------KAAVLKVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1974)
Q Consensus 436 --------------------~~~~~~~~k~~~~~l~k~l~-------Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1974)
.......++.++|.++..+. |.+..+|.+|..+|+.+...+|+..+..++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~-- 369 (876)
T 1qgr_A 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP-- 369 (876)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHH--
T ss_pred hHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHH--
Confidence 01111234678888888873 4567899999999999999999644332222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000166 489 DDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568 (1974)
Q Consensus 489 d~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~ 568 (1974)
.+.+.+... . ..++..+....+.-
T Consensus 370 ------~l~~~l~~~---------~------------------~~~r~~a~~~l~~i----------------------- 393 (876)
T 1qgr_A 370 ------FIKEHIKNP---------D------------------WRYRDAAVMAFGCI----------------------- 393 (876)
T ss_dssp ------HHHHHTTCS---------S------------------HHHHHHHHHHHHHT-----------------------
T ss_pred ------HHHHHccCC---------C------------------hHHHHHHHHHHHHH-----------------------
Confidence 222222110 0 00111110000000
Q ss_pred CCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHH
Q 000166 569 SGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEILVRL 645 (1974)
Q Consensus 569 ~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~---~~~~~~~Lvr~ 645 (1974)
. ....++.+...+..++ +.++..|.+.+|..|..|...+....+.... .....+-++..
T Consensus 394 ---------~--------~~~~~~~~~~~~~~~l-~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~ 455 (876)
T 1qgr_A 394 ---------L--------EGPEPSQLKPLVIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455 (876)
T ss_dssp ---------S--------SSSCHHHHHHHHHHHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHH
T ss_pred ---------H--------cCCCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHH
Confidence 0 0012233433333333 3567888999999999999988877766432 12233444443
Q ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHhcC--------------CCCccchhhhccchhhccccc-----hhhhHHHHHH
Q 000166 646 VCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KTRAHAMKCL 706 (1974)
Q Consensus 646 l~~~PgwkesNfqV~~k~leil~~la~~~~--------------~fs~~~~~~~l~~lveKlgD~-----K~r~~a~e~L 706 (1974)
+.. +..| +..|.......+..++..+. ..-...+..+++.++..+.+. .+|..+.++|
T Consensus 456 l~~--~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l 532 (876)
T 1qgr_A 456 LIE--GLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532 (876)
T ss_dssp HHH--HTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHH
T ss_pred HHH--HHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHH
Confidence 332 2344 36777788888888876542 112234456667666666543 5678899999
Q ss_pred HHHHHhhchHh------HHHHHHHhhhh----------cCC----hhhHHHHHHHHHHHHHHhc-cCcc-chHhHHHHHh
Q 000166 707 TTFSEAVGPGF------IFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KLKDLIDFCK 764 (1974)
Q Consensus 707 ~~~aE~~~p~~------V~~~l~~~~~~----------~Kn----PKv~ae~l~wl~~ai~eFG-~~~l-~~K~lI~~~k 764 (1974)
..++...+.++ ++..++..+.. ... |.++.-++.++..++..+| -... -+..+++.+-
T Consensus 533 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~ 612 (876)
T 1qgr_A 533 MEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLL 612 (876)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 99998776432 22222222211 111 6677788888888887777 2211 1345666666
Q ss_pred hhcCCCcc--HHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCC
Q 000166 765 DTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1974)
Q Consensus 765 ~~~L~~sN--~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~ 842 (1974)
.. |.+.+ +.||..++.+++.+-..+|..+.+|+..+-|.+...
T Consensus 613 ~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~---------------------------------- 657 (876)
T 1qgr_A 613 RM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG---------------------------------- 657 (876)
T ss_dssp HH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH----------------------------------
T ss_pred HH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------------------------------
Confidence 66 77765 589999999999999989888877765544433333
Q ss_pred CCCCccccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc--hhHhHHHHHHHHH
Q 000166 843 DGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITL 919 (1974)
Q Consensus 843 d~lpRvDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~D--sNk~lv~~al~ii 919 (1974)
+.+. +|.+|..|++.+..|+......+.|.. .+++..|...|.+ .+..+...++.++
T Consensus 658 -------------------l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l 717 (876)
T 1qgr_A 658 -------------------LKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVF 717 (876)
T ss_dssp -------------------HHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHH
T ss_pred -------------------HcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHH
Confidence 3333 688999999999999976555666654 7888889888865 5677999999999
Q ss_pred HHHHHhcChhHHhhhhhhhHHHHHHhccCc-----------hhHHHHHHHHHHHHHHhcc------------chhhhHHH
Q 000166 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------LDKMVPYV 976 (1974)
Q Consensus 920 ~~lA~amG~~~~k~~k~l~~~il~~l~D~K-----------~~vR~aa~~alda~~~~~g------------l~~~~~~i 976 (1974)
+.|+..+|+.|.+|...++|.++..+.++. ..+|.++..++..++...| +.++++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 999999999999999999999999998763 4899999999999988764 23445555
Q ss_pred HHHHh----cccCCcchHHHHHHHHHHHhccCCC---Ccc-hhhhhhhHhh-hccCCChHHHHHHHHHHHHHHH
Q 000166 977 TTALT----DAKLGAEGRKDLFDWLSKQLTGLSG---FPD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 977 ~~~L~----~~~~~p~~R~e~l~wL~~~l~~~~~---~~~-~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
...+. ++..+...|...+.-|.+-...... .+- ...++.|++. |+.|.+++||.+|.-+++.+.+
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 55553 2211456777665554443332322 111 2356778888 9999999999999999988765
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=4.2e-16 Score=210.18 Aligned_cols=595 Identities=11% Similarity=0.111 Sum_probs=399.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhh-cCCCC-----CCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIA-----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~-----~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~ 362 (1974)
.+.+.+.+.+|..|..++..|..++. .+... ......++..|.+.+.|.+..|-..|++|+..+.......+..
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~ 211 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH
Confidence 45566677778888888888887764 23221 2235678888888889999999999999999988877777778
Q ss_pred chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC-hh
Q 000166 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KA 437 (1974)
Q Consensus 363 y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~-~~ 437 (1974)
+...+++.++..+.|....||.++..||..++.... ..+..+++.+...++++.+.||.+++.|+....+... +.
T Consensus 212 ~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~ 291 (852)
T 4fdd_A 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291 (852)
T ss_dssp SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence 888999999999999999999999999999987511 1255677777888899999999999999987654321 12
Q ss_pred HHhHhhhhhHHHHHhhh-----------CC-----------CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHH
Q 000166 438 AVLKVHKDYVPICMECL-----------ND-----------GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495 (1974)
Q Consensus 438 ~~~~~~k~~~~~l~k~l-----------~D-----------s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~K 495 (1974)
.+.+.+..++|.++..+ +| .+-.||.+|..+|+.+...+|+..+..+
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l----------- 360 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI----------- 360 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHH-----------
Confidence 23345567889998888 33 3334677777777777666664322110
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000166 496 LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETS 575 (1974)
Q Consensus 496 I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s 575 (1974)
T Consensus 361 -------------------------------------------------------------------------------- 360 (852)
T 4fdd_A 361 -------------------------------------------------------------------------------- 360 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCCCcc
Q 000166 576 KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSE 654 (1974)
Q Consensus 576 ~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~-~~~~~~~~Lvr~l~~~Pgwke 654 (1974)
-+-+...+.+.+|+.|.+|+..+....+... ......+-++..+. +..+|
T Consensus 361 ---------------------------~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~--~~l~d 411 (852)
T 4fdd_A 361 ---------------------------LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI--QCLSD 411 (852)
T ss_dssp ---------------------------HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH--HHTTC
T ss_pred ---------------------------HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--HHcCC
Confidence 0122334556789999998888876665522 22223344555554 34689
Q ss_pred chHHHHHHHHHHHHHHHHhcC-CCCccchhhhccchhhcccc--chhhhHHHHHHHHHHHhhchH------hHHHHHHHh
Q 000166 655 KNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG------FIFERLYKI 725 (1974)
Q Consensus 655 sNfqV~~k~leil~~la~~~~-~fs~~~~~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~p~------~V~~~l~~~ 725 (1974)
.|..|.......+..+++..+ .........+++.++..+.| .++|..+..+|..+++..+.. -++..++..
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 999999999999988887432 23344556677888877765 578999999999999977653 234444444
Q ss_pred hhhcCChhhHHHHHHHHHHHHHHhccCccc---hHhHHHHHh---hhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhh
Q 000166 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK---DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799 (1974)
Q Consensus 726 ~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~---~K~lI~~~k---~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~ 799 (1974)
+ +.-+.+...-++..+..+.+..|-.... +..++..+. .. +.+..+.+| .++..++.+...+|..+.+|+.
T Consensus 492 l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 492 F-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp H-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHH
T ss_pred H-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHH
Confidence 3 3233444333334444444433432211 123333322 23 567778887 7899999999999999999998
Q ss_pred cchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHH
Q 000166 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK 879 (1974)
Q Consensus 800 dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~ 879 (1974)
.+=+.++..|..-+.+.... ... .+ ..+..+-..|.-+++.+..
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~-----------~~~--------~~-----------------~~~~~d~~~~~~~l~~l~~ 612 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLN-----------NAQ--------PD-----------------QYEAPDKDFMIVALDLLSG 612 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHC--------TT-----------------TSCCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------hcC--------Cc-----------------ccCCCcchHHHHHHHHHHH
Confidence 88887777777665431000 000 00 0001122357888999998
Q ss_pred HHHHcccCCCCCC-ccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHH
Q 000166 880 ILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLT 958 (1974)
Q Consensus 880 il~~ankrI~p~~-~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~ 958 (1974)
|+..-...+.|-. -..++..|-..+.|.+..+...+..+++.++.++|..|.+|...++|.++..|.+....+|..|..
T Consensus 613 l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~ 692 (852)
T 4fdd_A 613 LAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATW 692 (852)
T ss_dssp HHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHH
T ss_pred HHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence 8876545554421 146888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc--chhhhHHHHHH----HhcccCCcchHHHHHHHHHHHhccCCC--CcchhhhhhhHhhhccC-CChHHH
Q 000166 959 VLDAWLAAVH--LDKMVPYVTTA----LTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVR 1029 (1974)
Q Consensus 959 alda~~~~~g--l~~~~~~i~~~----L~~~~~~p~~R~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L~D-r~~dVR 1029 (1974)
++..++..+| +.++++.+... |.++..+..++..+..=|.+-....+. .+.+..++.+.+..|.+ ++.+.|
T Consensus 693 alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~ 772 (852)
T 4fdd_A 693 AIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 772 (852)
T ss_dssp HHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHH
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHH
Confidence 9999998886 44444444333 334432223443333333222222221 23355666667777754 555567
Q ss_pred HHHHHHHHHHHHh
Q 000166 1030 KAAEACIVEILRA 1042 (1974)
Q Consensus 1030 kaA~~~L~~~m~~ 1042 (1974)
..|...|..++..
T Consensus 773 ~~a~~~l~~li~~ 785 (852)
T 4fdd_A 773 DSAFRGICTMISV 785 (852)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777766666654
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.82 E-value=8e-18 Score=215.07 Aligned_cols=552 Identities=13% Similarity=0.132 Sum_probs=362.0
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000166 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1974)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~ 684 (1974)
.++..|.|.+|..|..|+..+.......++. ...+.++.+|.. ..|.+-.|.....+.+..+....+. ......
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~-~~~~~l~~~L~~---~~d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTD---TIYDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHH---TCCCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHhCHH-HHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHHhccCc--HHHHHH
Confidence 5678999999999999999998765543221 122334555543 2266778888877777654432111 122344
Q ss_pred hccchhhccc--cchhhhHHHHHHHHHHHhhchHhHHHHHHHh---hhhcCChhhHHHHHHHHHHHHHHhccCccchHhH
Q 000166 685 CLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLYKI---MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1974)
Q Consensus 685 ~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~---~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~l 759 (1974)
+++.+..-+. +..+|..+.++|..+++..++..+...+++. +....++.++..++..+..+...+|-. ..+.+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--~~~~l 165 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VKAEL 165 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--HHHHH
Confidence 4444433223 3568999999999999998887665544443 346778999999999988887766632 35678
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCC
Q 000166 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1974)
Q Consensus 760 I~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~ 839 (1974)
+.++... +.+.|+.||.+|...++.+..++|+.. +..+
T Consensus 166 ~~~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~--------------------------------------- 203 (588)
T 1b3u_A 166 RQYFRNL-CSDDTPMVRRAAASKLGEFAKVLELDN--VKSE--------------------------------------- 203 (588)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHT---------------------------------------
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhcHHh--HHHH---------------------------------------
Confidence 8888887 899999999999999999988877521 0111
Q ss_pred CCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHH
Q 000166 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL 919 (1974)
Q Consensus 840 ~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii 919 (1974)
+-+.+..-+.|.+|.+|..|++.+..+.....+. .....++..|...+.|.+-.+-..++.++
T Consensus 204 --------------l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l 266 (588)
T 1b3u_A 204 --------------IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKF 266 (588)
T ss_dssp --------------HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTH
T ss_pred --------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 2234555667889999999999999988642110 01234677788888999999999999999
Q ss_pred HHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc--------hhhhHHHHHHHhcccCCcchHH
Q 000166 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPYVTTALTDAKLGAEGRK 991 (1974)
Q Consensus 920 ~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl--------~~~~~~i~~~L~~~~~~p~~R~ 991 (1974)
+.++..+|+.. +...++|.++..+.|..+.||.++..+|..+...+|- ..++|.+...+.++ ++..|.
T Consensus 267 ~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~ 342 (588)
T 1b3u_A 267 TELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVKS 342 (588)
T ss_dssp HHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHH
T ss_pred HHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHH
Confidence 99999998753 5567899999999999999999999999999988763 34445555555543 456666
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhcc
Q 000166 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1974)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k~~ 1071 (1974)
.+..+|.+-............++..+..+|.|.+.+||.++...|+.++..+|.+.+.+ .+.+
T Consensus 343 ~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-----------~~lp------ 405 (588)
T 1b3u_A 343 ALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQ-----------SLLP------ 405 (588)
T ss_dssp HHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHH-----------HHHH------
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHH-----------HHHH------
Confidence 65555432221111100011222335556677777777777777776666665432111 0111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhcccc
Q 000166 1072 ASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151 (1974)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~ 1151 (1974)
T Consensus 406 -------------------------------------------------------------------------------- 405 (588)
T 1b3u_A 406 -------------------------------------------------------------------------------- 405 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhh--HhHHHHHHHHHHhccccchHHHH
Q 000166 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII--EVLDILLRWFVLQFCKSNTTCLL 1229 (1974)
Q Consensus 1152 f~~pr~e~ve~L~~q~~~~~~~~l~~~Lf~~Dfk~~l~al~~l~~~l~~~~~~~i--~~lDlllkw~tlr~~dtN~~vl~ 1229 (1974)
.+...+-+.+|+-+..+++.|.......+.+.. ..+.++++| +.|++..|-.
T Consensus 406 ----------------------~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~----l~d~~~~Vr~ 459 (588)
T 1b3u_A 406 ----------------------AIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW----LVDHVYAIRE 459 (588)
T ss_dssp ----------------------HHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHG----GGCSSHHHHH
T ss_pred ----------------------HHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH----hcCCcHHHHH
Confidence 111122233444443333333322211111110 113344444 4788888877
Q ss_pred HHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCc----cchHHHHHhhhccCCh
Q 000166 1230 KVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA----TKTLPYILEGLRSKNN 1305 (1974)
Q Consensus 1230 k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~----skvf~~l~~glksKN~ 1305 (1974)
..+..+..+...+.... -...++|.|+.-..|+...+|...-..+..++..++. ..++|.|+..++..++
T Consensus 460 ~a~~~l~~l~~~~~~~~------~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~ 533 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEW------AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533 (588)
T ss_dssp HHHHHHHHHHHHHCHHH------HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHHHhCchh------HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCc
Confidence 78887777777654431 1356888888766777778887666666666554443 4678888888888889
Q ss_pred hhHhHHHHHHHHHHHhhcCccccccchHHHHHHHhccCChhHHHHHHHHHHH
Q 000166 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357 (1974)
Q Consensus 1306 r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA~~i~drD~~VR~AALn~l~~ 1357 (1974)
..|..++..++.+...+|-... ....++.+.++..|+|..||.+|..++..
T Consensus 534 ~Vr~~a~~~l~~l~~~~~~~~~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 534 NVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 9999999999998887775421 12345778788899999999999988874
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.80 E-value=3e-16 Score=210.46 Aligned_cols=652 Identities=14% Similarity=0.122 Sum_probs=429.0
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHhc-cccccchhh
Q 000166 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLR-THFSGSSRF 366 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~Ds--Nv~vv~~A~~~i~~LA~gLr-~~F~~y~~~ 366 (1974)
+.+.+.+...+. ..+.+.+..++..- ...+.+.+++..|...+.|. +..+...|+++++.++.-++ ..|..|...
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~-~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 172 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAE-IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE 172 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHH-GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhh-CcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHH
Confidence 444454444444 44555555544320 01245778999999999877 88999999999999998874 458899999
Q ss_pred hHHHHHHHhccC--CHHHHHHHHHHHHHHHHhcCCChh------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH
Q 000166 367 LLPVLLEKLKEK--KPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1974)
Q Consensus 367 ~l~~lLeklKEK--K~~V~eA~~~aLda~~~~~~~~l~------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~ 438 (1974)
+++.++..+++. ...||.++.+||..++.+....+. .+++.+...+.+..+.+|..++.+|.+.+...++.
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~- 251 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY- 251 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG-
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH-
Confidence 999999999987 588999999999988754111111 35666777778888999999999999998876543
Q ss_pred HhHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH-hcCCCCCCCCCCCccc
Q 000166 439 VLKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI-AGSGGDVATGTSSARV 516 (1974)
Q Consensus 439 ~~~~~k-~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~-~~~~~~~~~~~~~~~~ 516 (1974)
+.+.+. .+++.+..++.|.+++||..|.+++..+.....+ +. ++. .+.. ++. .| .
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~--~~-----~~~------~~~~~~~~-------~~---~ 308 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD--LA-----IEA------SEAAEQGR-------PP---E 308 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HH-----HHH------HHHHHHSS-------CC---S
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh--Hh-----hhh------ccccccCC-------Cc---c
Confidence 223445 8899999999999999999999999888765321 00 000 0001 110 00 0
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000166 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1974)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~ 596 (1974)
. . .. .+....++.
T Consensus 309 ~---~---~~-------------------------------------------------------------~~~~~~~~~ 321 (876)
T 1qgr_A 309 H---T---SK-------------------------------------------------------------FYAKGALQY 321 (876)
T ss_dssp S---C---CC-------------------------------------------------------------CHHHHHHHH
T ss_pred c---h---hH-------------------------------------------------------------HHHHHHHHH
Confidence 0 0 00 000000000
Q ss_pred HHhccCcHhHHHhh-------hhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Q 000166 597 RLGSLIPADTVGQL-------KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669 (1974)
Q Consensus 597 ~~~~l~~~~i~~~L-------~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~ 669 (1974)
++ +.++..| .+.+|..|.+|.+-+......... ...+.++.++.. .+.+.|.+|...++.++..
T Consensus 322 ----ll-~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~l~~l~~--~l~~~~~~~r~~a~~~l~~ 392 (876)
T 1qgr_A 322 ----LV-PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKE--HIKNPDWRYRDAAVMAFGC 392 (876)
T ss_dssp ----HH-HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHH
T ss_pred ----Hh-HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHHHHHHHHHH--HccCCChHHHHHHHHHHHH
Confidence 00 0011111 246899999998888766655432 224455555542 4678899999999999988
Q ss_pred HHHhcC-CCCccchhhhccchhhccccc--hhhhHHHHHHHHHHHhhch--------HhHHHHHHHhhhhcCChhhHHHH
Q 000166 670 LAATAT-KFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGP--------GFIFERLYKIMKDHKNPKVLSEG 738 (1974)
Q Consensus 670 la~~~~-~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~p--------~~V~~~l~~~~~~~KnPKv~ae~ 738 (1974)
+++... ..-......+++.++.-+.|. .+|..+..+|..+++..++ ..++..++..+. + +|+|+..+
T Consensus 393 i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~-~~~v~~~a 470 (876)
T 1qgr_A 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-A-EPRVASNV 470 (876)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-S-CHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc-C-CHHHHHHH
Confidence 765332 111123445677777777775 5899999999999998654 245566666653 3 49999999
Q ss_pred HHHHHHHHHHhcc-------------Ccc--chHhHHHHHhhhcCCCc---cHHHHHHHHHHHHHHHhhhCchhHhhhhc
Q 000166 739 ILWMVSAVEDFGV-------------SHL--KLKDLIDFCKDTGLQSS---AAATRNATIKLLGALHKFVGPDIKGFLAD 800 (1974)
Q Consensus 739 l~wl~~ai~eFG~-------------~~l--~~K~lI~~~k~~~L~~s---N~~VR~aAi~Ll~~ly~~~G~~l~~~l~d 800 (1974)
+..+..++..+|- ..+ -+..++..+... +... +..+|..+...++.+-..+|.....++..
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~-l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~ 549 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLET-TDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHH-TTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHH-HhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 9999999998870 112 236777777776 7654 57899999999999999999999999988
Q ss_pred chHHHHHHHHHHHhcCCCC-CCCCCcc--ccccc--cCcCCCCCCCCCCCCcccc---ccCCcHHHHhhcCCCC--hHHH
Q 000166 801 VKPALLSALDAEYEKNPFE-GTVVPKK--TVRAS--ESTSSVSSGGSDGLPREDI---SGKFTPTLVKSLESPD--WKVR 870 (1974)
Q Consensus 801 lkpall~~Ie~EF~K~~~~-~~p~p~R--~~r~~--~~~~~~~~~~~d~lpRvDI---s~kit~~l~~~l~d~~--WK~R 870 (1974)
+=|.++..+...+..-... +...+.. .+|.. .....- -..+++.++ .+.|-+.++.-+.+.. |.+|
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l----~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~ 625 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV----LRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQ 625 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHH----HTTSCHHHHHTTHHHHHHHHHHHC-----CCHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHH----HHHhChhhhhHHHHHHHHHHHHHHHhccCCCCcc
Confidence 8888888887765321100 0000000 00000 000000 000110111 2334445566666664 8999
Q ss_pred HHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch-hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc--
Q 000166 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-- 947 (1974)
Q Consensus 871 kEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D-- 947 (1974)
.+++..+..|+......+.|-. .+++..|...|.|. +..+...|+.+++.|+.++|..+.+|...+++.++..|.+
T Consensus 626 ~~a~~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 626 EDALMAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc
Confidence 9999999999976555566653 78899999999887 8999999999999999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHHhccc--hhhhHHHHHHHh----ccc--CC-------cchHHHHHHHHHHHhccCCCC-----
Q 000166 948 NKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALT----DAK--LG-------AEGRKDLFDWLSKQLTGLSGF----- 1007 (1974)
Q Consensus 948 ~K~~vR~aa~~alda~~~~~gl--~~~~~~i~~~L~----~~~--~~-------p~~R~e~l~wL~~~l~~~~~~----- 1007 (1974)
....+|.+++.++..++..+|- ..+++.+...|. ... .+ ..+|..++.++...+......
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~ 784 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVH 784 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 4567999999999999988773 344554444443 111 01 157877777766444432211
Q ss_pred ---cchhhhhhhHh----hhccCC--ChHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000166 1008 ---PDAAHLLKPAS----IAMTDK--SSDVRKAAEACIVEILRAGGQETIEKN 1051 (1974)
Q Consensus 1008 ---~~~~~~~~p~~----~~L~Dr--~~dVRkaA~~~L~~~m~~~G~~~~~~~ 1051 (1974)
..+.+++..++ ..+.|+ +.+||++|-.+|+.+..++|.+.+..+
T Consensus 785 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 837 (876)
T 1qgr_A 785 PDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837 (876)
T ss_dssp GGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 12233333222 233677 789999999999999999998444433
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.20 E-value=1.5e-08 Score=125.41 Aligned_cols=377 Identities=12% Similarity=0.065 Sum_probs=257.8
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhc----------
Q 000166 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (1974)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~---------- 674 (1974)
.++.++.+.+-..|.+|-+.|.+.-... .......|+..+.. .+.+.+|.+...-++..+..+.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--~~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--LPTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 3556677777788888888887643320 01123344555542 2345677777766666655321
Q ss_pred --CCCCccchhhhccchhhcccc--chhhhHHHHHHHHHHHhhchH----hHHHHHHHhhhhcC--ChhhHHHHHHHHHH
Q 000166 675 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 744 (1974)
Q Consensus 675 --~~fs~~~~~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~p~----~V~~~l~~~~~~~K--nPKv~ae~l~wl~~ 744 (1974)
..++...-..+-..+++.+.+ .++ ..+..++..++....|. -++..++..+ ... +|.++..++.++..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 123333333444445555554 467 77888888888876663 3556666664 445 89999999999999
Q ss_pred HHHHhccCcc--chHhHHHHHhhhcCCCc--cHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC
Q 000166 745 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1974)
Q Consensus 745 ai~eFG~~~l--~~K~lI~~~k~~~L~~s--N~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~ 820 (1974)
+.+++....+ ....++..+..+ |++. |+.||.+|++.++.+-.++++.+... .|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~--------------~~~~----- 216 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDKE--------------SERH----- 216 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH--------------HHHH-----
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh--------------HHHH-----
Confidence 9998742222 235677777776 8888 89999999998877643322111000 0000
Q ss_pred CCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCcc-chHHH
Q 000166 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 899 (1974)
Q Consensus 821 ~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~g-eL~~a 899 (1974)
.+-+.+...+.+.++.+|..+++.+..++....+++.+.. . +++..
T Consensus 217 --------------------------------~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~ 263 (462)
T 1ibr_B 217 --------------------------------FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAI 263 (462)
T ss_dssp --------------------------------HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHH
T ss_pred --------------------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 0112233345678899999999999999987667777775 7 89998
Q ss_pred HhhhccchhHhHHHHHHHHHHHHHHhc---------------------ChhHHhhhhhhhHHHHHHhcc-------Cchh
Q 000166 900 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGD-------NKKH 951 (1974)
Q Consensus 900 Lk~Rl~DsNk~lv~~al~ii~~lA~am---------------------G~~~~k~~k~l~~~il~~l~D-------~K~~ 951 (1974)
+-..+.|.+..+...|+.++..++... ..-+++|...++|.++..|.+ ....
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888899999999999999999988753 223456778899999998864 3468
Q ss_pred HHHHHHHHHHHHHHhccchhhhHH----HHHHHhcccCCcchHHHHHHHHHHHhccCCC---CcchhhhhhhHhhhccCC
Q 000166 952 MRECTLTVLDAWLAAVHLDKMVPY----VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1024 (1974)
Q Consensus 952 vR~aa~~alda~~~~~gl~~~~~~----i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~---~~~~~~~~~p~~~~L~Dr 1024 (1974)
+|.++..+|+..+..+| +.+++. +...|.++ ++..|...+.-|..-...... .+....++.+++.+|.|.
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 565554 44445443 577888888777655543331 123455666688899999
Q ss_pred ChHHHHHHHHHHHHHHHhcCH
Q 000166 1025 SSDVRKAAEACIVEILRAGGQ 1045 (1974)
Q Consensus 1025 ~~dVRkaA~~~L~~~m~~~G~ 1045 (1974)
++.||.+|..+|+.+...+|.
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998876
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.03 E-value=8.9e-08 Score=118.43 Aligned_cols=374 Identities=14% Similarity=0.103 Sum_probs=236.0
Q ss_pred CCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCC--CCHHHHHHHHHHHHHHHHHcChh-----------h
Q 000166 21 LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAADAD-----------A 87 (1974)
Q Consensus 21 ~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~D--sN~~aqEk~leal~~~l~~a~~~-----------~ 87 (1974)
.+-+=-.|..|-+.|.+.... ..|.|..+ ++ ..+.+ .+..+...|.-.+..++...... .
T Consensus 11 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~--L~-~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 11 VSPDRLELEAAQKFLERAAVE----NLPTFLVE--LS-RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp TCSCHHHHHHHHHHHHHHHHH----HHHHHHHH--HH-HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHhh----ChHHHHHH--HH-HHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 344556788888888763321 12344322 22 22333 36778888877777776432110 0
Q ss_pred hh-hhhHHHHHHHhhhhcCChhhHHHHHHHHHHHHhhchh----hhHHHHHHHHhhcc--CchhHHHHHHHHHHHHHhhC
Q 000166 88 GR-YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQALSEFG 160 (1974)
Q Consensus 88 ~~-~~~~v~~~lveK~L~~r~ktk~~a~e~~l~~vE~e~~----~~v~e~ll~~~~~K--~PKvvaaai~~l~~~l~~FG 160 (1974)
.. ....+-..|++......+.. ..+..++-.++..+.+ ..++..|...+.+. +|-+.-+++.++..+.+++.
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 00 11123333444322233344 4444444444433322 25666677777766 77777888888888877764
Q ss_pred CCccC--hhHHHhhchhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcch
Q 000166 161 AKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRK 236 (1974)
Q Consensus 161 ~kvv~--~K~ilk~l~~lf~h~--dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~ 236 (1974)
...+. ...++..+-.++.+. +..||.++.+.+..+-.+++ +.+ +. .+ |.
T Consensus 163 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~-----~~~-~~---~~-------~~----------- 215 (462)
T 1ibr_B 163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK-----ANF-DK---ES-------ER----------- 215 (462)
T ss_dssp GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH-----HHH-TS---HH-------HH-----------
T ss_pred chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-----Hhh-hh---hH-------HH-----------
Confidence 33221 345666677777776 67788777665444322211 111 00 00 00
Q ss_pred hhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhh-c
Q 000166 237 IRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-T 315 (1974)
Q Consensus 237 ~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~-~ 315 (1974)
.| ++ ..+.+.+.+..+..|..+++.|..+.. .
T Consensus 216 -----------------------------------~~-------l~-----~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 216 -----------------------------------HF-------IM-----QVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp -----------------------------------HH-------HH-----HHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred -----------------------------------HH-------HH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00 011223345567788999999888764 3
Q ss_pred CCCCCCChh-HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh---------------------ccccccchhhhHHHHHH
Q 000166 316 KRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---------------------RTHFSGSSRFLLPVLLE 373 (1974)
Q Consensus 316 pKi~~~dy~-dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gL---------------------r~~F~~y~~~~l~~lLe 373 (1974)
++.-...+. +++..+-..+.|.+-.|...|+..+..+++.. ..-+.+|...++|.+++
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 328 (462)
T 1ibr_B 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (462)
T ss_dssp GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHH
Confidence 433333355 78888888888999999999999999998764 12244577889999999
Q ss_pred Hhcc-------CCHHHHHHHHHHHHHHHHhcCCC---hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh
Q 000166 374 KLKE-------KKPTVAESLTQTLQAMHKAGCLN---LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1974)
Q Consensus 374 klKE-------KK~~V~eA~~~aLda~~~~~~~~---l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~ 443 (1974)
.+.+ ...++|.++..+|+.++.. .+ +..+++-+...+++.++.+|..++..|....+......+.+.+
T Consensus 329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~--~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l 406 (462)
T 1ibr_B 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATC--CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (462)
T ss_dssp HTTCCCSSCCTTCCSHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred HHHhcccccccccchHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9864 3568999999999999886 33 3345556667888999999999999888777654433333455
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
..++|.++.+++|+++.||.+|+.+|+.+...+|.
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999986
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.01 E-value=6.4e-07 Score=116.32 Aligned_cols=177 Identities=14% Similarity=0.180 Sum_probs=128.2
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
.++.+.+.+.+=.+|++++..+.-+...-. |...+.-.+-+.+.+.|..+-.++.-.+..+++.- ...+..+
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~ 87 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGK----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMA 87 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTC----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHH
Confidence 356777888888899999999865432111 33444444555788999888888888888777641 2235677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhH
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1974)
++.+..-+++..+.||..+..+|-.+... --...+++++...+.+.+|.||..+..-+.+.....+.... ...++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRVD--KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHH
Confidence 88999999999999997665444332110 11234556688899999999999999999999885543211 03578
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
+.+..+|+|+++.||.+|..+|+.+...-.
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999876543
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.79 E-value=8.7e-07 Score=115.11 Aligned_cols=383 Identities=11% Similarity=0.110 Sum_probs=250.8
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000166 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1974)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~ 684 (1974)
++.+.|.+.+-..|.+++..+.-..-...+. ...++..+ + -+.++|+.+-+.+.-.+..+++..+ -.+.+
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~---~~~~~~vi-~--l~~s~~~~~Krl~yl~l~~~~~~~~----e~~~l 86 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGKDV---SSLFPDVV-N--CMQTDNLELKKLVYLYLMNYAKSQP----DMAIM 86 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC---GGGHHHHH-H--TTSSSCHHHHHHHHHHHHHHHHHSH----HHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh---HHHHHHHH-H--HhCCCCHHHHHHHHHHHHHHcccCc----hHHHH
Confidence 4667788888889999999988544322221 12222222 2 2678899999888888887776422 22345
Q ss_pred hccchhhccccc--hhhhHHHHHHHHHHHhhch---HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhH
Q 000166 685 CLLGISERVADI--KTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1974)
Q Consensus 685 ~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~p---~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~l 759 (1974)
+++.+..-+.|. -.|..| |..++....+ .+++..+...+ .+.+|-|+..++..+..+.. .+...+.-..+
T Consensus 87 ~~n~l~kdL~~~n~~ir~~A---L~~L~~i~~~~~~~~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~ 161 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALA---VRTMGCIRVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLHD-INAQMVEDQGF 161 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHH---HHHHHTCCSGGGHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHHH-SSCCCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHH---HHHHHcCChHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHh-hChhhcccccH
Confidence 566666666663 356655 4555554444 45555666654 79999999999999999887 33443433468
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch---------hHhhh---hcchHHHHHHHHHHHhcCCCCCCCCCccc
Q 000166 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD---------IKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKT 827 (1974)
Q Consensus 760 I~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~---------l~~~l---~dlkpall~~Ie~EF~K~~~~~~p~p~R~ 827 (1974)
++.+..+ |.+.|+.||.+|+.+|+.+...-... +...+ .+..|-.+..|=.-+.+.. |.. .
T Consensus 162 ~~~l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~-~-- 234 (591)
T 2vgl_B 162 LDSLRDL-IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKD-D-- 234 (591)
T ss_dssp HHHHHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCS-H--
T ss_pred HHHHHHH-hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCC-h--
Confidence 8899998 99999999999999999987654322 21111 1212211111112223321 000 0
Q ss_pred cccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCC--CCCc----cchHHHHh
Q 000166 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--PAGT----GELFGGLR 901 (1974)
Q Consensus 828 ~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~--p~~~----geL~~aLk 901 (1974)
+-..++-+.+...+.+.++-+|.||...+..+. +.+. |... +.+...|.
T Consensus 235 ---------------------~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~ 289 (591)
T 2vgl_B 235 ---------------------REAQSICERVTPRLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLV 289 (591)
T ss_dssp ---------------------HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHH
Confidence 001122234555688999999999998886654 2231 1111 12223333
Q ss_pred hhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 902 ~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
.|.+++.++.-.|++.++.++..-..-+..|.+.++ -.+.|. ..||..+++.|-.++...+.+.+++.+.+++.
T Consensus 290 -~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~----~~~~d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~ 363 (591)
T 2vgl_B 290 -TLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF----VKYNDP-IYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363 (591)
T ss_dssp -HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS----CCTTSC-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTT
T ss_pred -HHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe----eccCCh-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHh
Confidence 345678899999999999999876666677766542 234555 99999999999998888888888998888887
Q ss_pred cccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcC
Q 000166 982 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1974)
Q Consensus 982 ~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1974)
+. .++.|.++..+|...-...+ +....++..++..|.|....||+.+-.++..++....
T Consensus 364 ~~--d~~~r~~~v~aI~~la~~~~--~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 364 EV--DVDFVRKAVRAIGRCAIKVE--QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp SS--CHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred cC--CHHHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 54 57899999998876554432 2344455668888999999999988878888777654
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.62 E-value=8.3e-07 Score=109.62 Aligned_cols=378 Identities=12% Similarity=0.087 Sum_probs=240.4
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHh-hh-ccc------hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhc
Q 000166 603 PADTVGQLKSAVWKERLEAISSLRQQVEA-VQ-NLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA 674 (1974)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~E~l~~~v~~-~~-~~~------~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~ 674 (1974)
-+.++..|.+.+...|..|+..+.+.+.. .+ ... .....|++.|. .+.|..|+...+.++..++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-----~~~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-----RKENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCC
Confidence 35678889999999999999999987652 11 110 22344555553 1237889999999998877521
Q ss_pred CCCCccch-hhhccchhhcccc--chhhhHHHHHHHHHHHhhc--hH-----hHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000166 675 TKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PG-----FIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1974)
Q Consensus 675 ~~fs~~~~-~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~--p~-----~V~~~l~~~~~~~KnPKv~ae~l~wl~~ 744 (1974)
....+..+ .-+++.++.-+.+ ..+|..+..+|..+++... -. -++..++..+....++.++..++..+..
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11111110 2245566655544 5789999999998887421 11 1345566665445789999999988888
Q ss_pred HHHHhcc--CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCC
Q 000166 745 AVEDFGV--SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1974)
Q Consensus 745 ai~eFG~--~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p 822 (1974)
+....+. ...-+..+++.+... +.+.|+.||..|...|+.+-....+ .... +-+
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~----~~~------- 232 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPND------------KIQA----VID------- 232 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHH------------HHHH----HHH-------
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcH------------HHHH----HHH-------
Confidence 7753311 111236788888887 9999999999998888765432110 0000 000
Q ss_pred CCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh
Q 000166 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1974)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~ 902 (1974)
..+-+.++.-+.+.+|.+|..|+..+..|........+.-.-..++..|..
T Consensus 233 -----------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 283 (450)
T 2jdq_A 233 -----------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283 (450)
T ss_dssp -----------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH
Confidence 012346777888999999999999999987532111110000136778888
Q ss_pred hccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc---ch-----hhh
Q 000166 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LD-----KMV 973 (1974)
Q Consensus 903 Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g---l~-----~~~ 973 (1974)
.|.+.|..+...|+.+++.|+.+-........ ..++|.++..|.|..+.||.++..+|..+..... .. .++
T Consensus 284 ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i 363 (450)
T 2jdq_A 284 LLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363 (450)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 88899999999999999999874322233332 3789999999999999999999999988875421 11 345
Q ss_pred HHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhhhh------hhHhhhccCCChHHHHHHHHHHHHH
Q 000166 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 974 ~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~--------~~~~~~~~------~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
+.+...|.++ ++..|..++.-|..-+..... ...+...+ ..+...+.+.+.+||+.|..+|..+
T Consensus 364 ~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 364 KPLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp HHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5666666644 567777766555433321110 00111111 2233345677888888888877765
Q ss_pred H
Q 000166 1040 L 1040 (1974)
Q Consensus 1040 m 1040 (1974)
.
T Consensus 442 ~ 442 (450)
T 2jdq_A 442 F 442 (450)
T ss_dssp H
T ss_pred C
Confidence 5
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.61 E-value=6.2e-07 Score=114.40 Aligned_cols=381 Identities=12% Similarity=0.087 Sum_probs=244.5
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhh-c-c-----chhHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHHHHhc
Q 000166 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ-N-L-----DQSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAATA 674 (1974)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~-~-~-----~~~~~~Lvr~l~~~Pgwkes-NfqV~~k~leil~~la~~~ 674 (1974)
-+.++..|.+.++..|..|+..|.+.+.... + . ......|+.+| ++. |..|+...+.+|..++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L------~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM------RENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT------STTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh------CCCCCHHHHHHHHHHHHHHhCCC
Confidence 3677899999999999999999987765421 1 0 01123344333 333 7889988888888776521
Q ss_pred CCCCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHhh--chHh-----HHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000166 675 TKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAV--GPGF-----IFERLYKIMKDHKNPKVLSEGILWMVS 744 (1974)
Q Consensus 675 ~~fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~--~p~~-----V~~~l~~~~~~~KnPKv~ae~l~wl~~ 744 (1974)
+......+ .-+++.++.-+. +..++..+..+|..++... ...+ ++..++..+ .+.++.++..++..|..
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 11111100 124555555554 4678999999999988642 1122 344555554 45889999888887777
Q ss_pred HHHHhcc--CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCC
Q 000166 745 AVEDFGV--SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1974)
Q Consensus 745 ai~eFG~--~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p 822 (1974)
+....+. ...-...+++.+... |.+.++.||..|..+|+.+-... +.....+ + .
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~------------~~~~~~~---~-~------- 297 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGP------------QEAIQAV---I-D------- 297 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSC------------HHHHHHH---H-H-------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCC------------HHHHHHH---H-h-------
Confidence 7653311 112235778888887 99999999999999998765321 1111110 0 0
Q ss_pred CCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh
Q 000166 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1974)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~ 902 (1974)
..+-+.++.-+.+.+|.+|..|+..+..|........+.-.-..++..|..
T Consensus 298 -----------------------------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 298 -----------------------------VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp -----------------------------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 012456778888999999999999999887421110010000236778888
Q ss_pred hccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc----------hh
Q 000166 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DK 971 (1974)
Q Consensus 903 Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl----------~~ 971 (1974)
.|.+.+..+...|+.+++.|+.+-........ ..++|.++..|.+....+|.++..+|..+....+- ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 88899999999999999999874322222222 46899999999999999999999999988765321 12
Q ss_pred hhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhh------hhhhHhhhccCCChHHHHHHHHHHH
Q 000166 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 972 ~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~--------~~~~~~------~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
+++.+...|.++ ++..|..++.-|..-+..... ...... .+..+...+.|.+.+||+.|..+|.
T Consensus 429 ~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 429 CIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp CHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556677777654 577777776666544432211 011111 1334555678999999999998887
Q ss_pred HHHHhcCH
Q 000166 1038 EILRAGGQ 1045 (1974)
Q Consensus 1038 ~~m~~~G~ 1045 (1974)
.+...-.+
T Consensus 507 ~~~~~~~~ 514 (530)
T 1wa5_B 507 TYFGEEED 514 (530)
T ss_dssp HHSSSCC-
T ss_pred HHCCcccc
Confidence 76654433
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.59 E-value=7.1e-06 Score=101.29 Aligned_cols=183 Identities=14% Similarity=0.077 Sum_probs=127.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCcc-chHHHHhhhccch-hHhHHHHHHHHHHHHHHhcChhHHh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTG-ELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEK 932 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~g-eL~~aLk~Rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k 932 (1974)
+.++..+.+.+..+|..|+..+.+++.. .++.++.-.-. .++..|-..|.+. |..+...|+.+++.++..-......
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4588888999999999999999999862 23332221112 5778888888777 8999999999999998743222222
Q ss_pred h-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 933 S-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 933 ~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
. ...++|.++..|.+..+.+|..|..+|..+..... . ...++.+...|.+. .++..|..+...|. .+...
T Consensus 103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~-~l~~~ 180 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALS-NLCRG 180 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHH-HHHCC
T ss_pred HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHH-HHhCC
Confidence 2 24689999999999999999999999988775421 0 23566677777642 25667777665554 44332
Q ss_pred C--CC--cchhhhhhhHhhhccCCChHHHHHHHHHHHHHH
Q 000166 1005 S--GF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1974)
Q Consensus 1005 ~--~~--~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1974)
. .. ......+.+++..|.+.+.+||..|..+|..+.
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 2 11 123455666888888999999998887776654
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.57 E-value=5.2e-06 Score=105.87 Aligned_cols=382 Identities=11% Similarity=0.068 Sum_probs=252.4
Q ss_pred cccccCCCChhHHHHHHHHHHHHhhhcCCCCChhhh--hhhhhhhhhcCCC-CHHHHHHHHHHHHHHHHHcChhhhhh--
Q 000166 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADS-NAPVQDKALDALIAYLKAADADAGRY-- 90 (1974)
Q Consensus 16 l~erL~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~--~~~~l~kk~v~Ds-N~~aqEk~leal~~~l~~a~~~~~~~-- 90 (1974)
|-+.|.+.+|..|..|...|.+.+....++.-..+. ...+.+-.++.+. |..+|+.++.+|..+...... ....
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~ 170 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVV 170 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 456788999999999999999887542111101111 1223344567776 999999999988766543211 1111
Q ss_pred hhHHHHHHHhhhhcCChhhHHHHHHHHHHHHhhch--h-----hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc
Q 000166 91 AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI 163 (1974)
Q Consensus 91 ~~~v~~~lveK~L~~r~ktk~~a~e~~l~~vE~e~--~-----~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kv 163 (1974)
..+.++.++.-.-+..+..+..|..++..++.... . ..++..|+..+.+.++.+...|+.+|..+...-+...
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 12345555554323577888888888877775321 1 2457778888888889999999888888775432221
Q ss_pred --cChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHH
Q 000166 164 --IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241 (1974)
Q Consensus 164 --v~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q 241 (1974)
.-...++..|-.++.|.|..||..+...+..|.. +.+ ... +.+
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~---~~~---------~~~--------------------- 295 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--GPQ---EAI---------QAV--------------------- 295 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--SCH---HHH---------HHH---------------------
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC--CCH---HHH---------HHH---------------------
Confidence 2234567777788899999999888777665542 111 000 000
Q ss_pred hHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcC-CCCC
Q 000166 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTK-RIAP 320 (1974)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~p-Ki~~ 320 (1974)
.. .+ + + +.+..-+.+.+|..|..|+..|..++... ....
T Consensus 296 ---------~~---~~-----------------------~---v--~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 335 (530)
T 1wa5_B 296 ---------ID---VR-----------------------I---P--KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335 (530)
T ss_dssp ---------HH---TT-----------------------C---H--HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ---------Hh---cC-----------------------c---H--HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH
Confidence 00 00 0 0 13555567788999999999998876421 1000
Q ss_pred C-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccch-hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Q 000166 321 G-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1974)
Q Consensus 321 ~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~-~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~ 398 (1974)
. --..++..|..++.+.+..+...|+.+|+.|+.+-........ ..++|.+++-+.+....|+.++..+|-.++..+
T Consensus 336 ~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~- 414 (530)
T 1wa5_B 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG- 414 (530)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC-
Confidence 0 0013677888899988999999999999999975433222222 468999999999999999999999999887752
Q ss_pred CC-------h--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh---------HHhHhh--hhhHHHHHhhhCCCC
Q 000166 399 LN-------L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVH--KDYVPICMECLNDGT 458 (1974)
Q Consensus 399 ~~-------l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~---------~~~~~~--k~~~~~l~k~l~Ds~ 458 (1974)
.. + ..+++.+...+.+.+|.++..++..|...+...+.. ..-..+ ...++.+..+++|.+
T Consensus 415 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~ 494 (530)
T 1wa5_B 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494 (530)
T ss_dssp TTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC
Confidence 11 0 126678888999999999999998888887643221 111111 125778888999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000166 459 PEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 459 ~~VR~aA~~~l~~lmk 474 (1974)
++||+.|..+|..+..
T Consensus 495 ~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 495 DKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999998887765553
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.54 E-value=1.4e-06 Score=110.93 Aligned_cols=380 Identities=12% Similarity=0.091 Sum_probs=244.8
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhh-c-c-----chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-N-L-----DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~-~-~-----~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~ 676 (1974)
+.++..|.+.++..|+.|...|...+.... + . ......|+.+|. .+.|..|+...+.+|..++.....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-----REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 567889999999999999999987765422 1 1 122455666663 223478888888888888763211
Q ss_pred CCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHhhch--Hh-----HHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 000166 677 FPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1974)
Q Consensus 677 fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~p--~~-----V~~~l~~~~~~~KnPKv~ae~l~wl~~ai 746 (1974)
.....+ .-+++.++.-+. +..++..+..+|..++..... .. ++..++..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 124555555554 456889999999998863211 12 24456666556789999998888887776
Q ss_pred HHhcc-CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCc
Q 000166 747 EDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 825 (1974)
Q Consensus 747 ~eFG~-~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~ 825 (1974)
..... ...-...+++.+... |.+.|+.||..|...|+.+-....+.+..++ .
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~----------------~---------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKIQAVI----------------E---------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHH----------------H----------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH----------------H----------
Confidence 54311 112236788888888 9999999999999988765422111111100 0
Q ss_pred cccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc
Q 000166 826 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1974)
Q Consensus 826 R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~ 905 (1974)
..+-+.|+.-+.+.+|.+|..|+..|..|........+.-.-..++..|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 012346788888999999999999999888521111111001235677777887
Q ss_pred ch-hHhHHHHHHHHHHHHHHhcChhHHhh-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc---c-----hhhhHH
Q 000166 906 DS-NKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---L-----DKMVPY 975 (1974)
Q Consensus 906 Ds-Nk~lv~~al~ii~~lA~amG~~~~k~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g---l-----~~~~~~ 975 (1974)
+. +..+...|+.+++.|+.+-....... ...++|.++..|.+....+|..|..+|..+....+ . ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 77 99999999999999987422222222 33789999999999999999999999998876621 1 234556
Q ss_pred HHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhh------hhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 976 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 976 i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~--------~~~~~~------~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
+...|.++ ++..+..++.-|..-+..... ...... .+..+...+.+.+.+|++.|..+|..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 66767654 566676666555444321110 011111 23345666789999999999999987765
Q ss_pred hc
Q 000166 1042 AG 1043 (1974)
Q Consensus 1042 ~~ 1043 (1974)
.-
T Consensus 497 ~e 498 (528)
T 4b8j_A 497 DE 498 (528)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 28
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.52 E-value=1e-06 Score=118.76 Aligned_cols=193 Identities=17% Similarity=0.199 Sum_probs=161.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcC-CCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh--ccccccchh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTK-RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSR 365 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~p-Ki~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gL--r~~F~~y~~ 365 (1974)
+.+..+..++=.+|+++-..+-.++... -...-.| .++..|++-+.|-+-. --|+..++.||+-. .+.+.+|.-
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 3455666666788999999988866532 2222334 6999999999987666 89999999999544 568999999
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh---hhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhhCChhHHhH
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLK 441 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l---~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~~~~~~~~~ 441 (1974)
.++|.+|+.+.||+..|++|+..|+++++.. ++. ..+++.+..+|++. .+|.|...+.++.+..+.. +..+..
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~ 171 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNA--VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVAL 171 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHH
Confidence 9999999999999999999999999999986 454 45678888999876 4999999999999999876 444556
Q ss_pred hhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000166 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1974)
Q Consensus 442 ~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1974)
.+..++|.+..++-|..++|.++|.+++-.+-.++|.+.+.+++..
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~ 217 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPS 217 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHH
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHH
Confidence 6789999999999999999999999999999999999888888874
No 29
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.44 E-value=0.00081 Score=92.09 Aligned_cols=263 Identities=10% Similarity=0.091 Sum_probs=148.2
Q ss_pred hhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC--ccHHHHHHHHHHHHHHHhhhC-chhHhhhhcchHHHHH
Q 000166 732 PKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLS 807 (1974)
Q Consensus 732 PKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~--sN~~VR~aAi~Ll~~ly~~~G-~~l~~~l~dlkpall~ 807 (1974)
|+|+..++.-+..+.++++-...+ +..++..+-.+ +.+ ....+|......+|.+...++ +....++..+=+.++.
T Consensus 557 ~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~ 635 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE 635 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 445544444444444444322111 13344444444 444 346888899999999988776 5566666655455555
Q ss_pred HHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC
Q 000166 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887 (1974)
Q Consensus 808 ~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr 887 (1974)
.++.-. +. ... .++ +-...-+.++.+..++..-+..
T Consensus 636 ~l~~~~-~~---~~~--------------------------------~~~--------~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 636 ELQAIC-QA---DSK--------------------------------TPA--------ARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHHHHH-TC--------------------------------------CHH--------HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHH-hc---CCC--------------------------------Chh--------hHHHHHHHHHHHHHHHhhcCCC
Confidence 444321 11 000 000 0112234555555555432222
Q ss_pred CCCC------------CccchHHHHhhhccch--hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHH
Q 000166 888 IQPA------------GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953 (1974)
Q Consensus 888 I~p~------------~~geL~~aLk~Rl~Ds--Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR 953 (1974)
+.++ ...+++..+..-+.+. +..++..+..+++.++.++|..|.+|.-.+++.++..+....-
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~--- 748 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC--- 748 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---
Confidence 1110 0245666666655432 4578899999999999999999999988888888888766432
Q ss_pred HHHHHHHHHHHHhccch--------hhhHH----HHHHHhc-----ccCCcchHHHHHHHHHHHhccCCC----Ccc-hh
Q 000166 954 ECTLTVLDAWLAAVHLD--------KMVPY----VTTALTD-----AKLGAEGRKDLFDWLSKQLTGLSG----FPD-AA 1011 (1974)
Q Consensus 954 ~aa~~alda~~~~~gl~--------~~~~~----i~~~L~~-----~~~~p~~R~e~l~wL~~~l~~~~~----~~~-~~ 1011 (1974)
.+++..+..++...|-+ .+++. +...|.. ...+|+.+.+.+.++.+.+...+. ++. +.
T Consensus 749 ~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~ 828 (971)
T 2x1g_F 749 APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYD 828 (971)
T ss_dssp HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH
Confidence 46888888888877764 22221 1122221 123689999999999998877654 222 44
Q ss_pred hhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
.++.-+..+|.-...++-+++-.++..++..
T Consensus 829 ~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 829 RLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 4444455566545555667777788776665
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.43 E-value=0.00026 Score=94.95 Aligned_cols=496 Identities=12% Similarity=0.081 Sum_probs=272.6
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-----
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----- 397 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~----- 397 (1974)
|..=+..|-..|.+.+..+...+++++..+.+. -.....+|.++.-+++..+.|++.+..+|-.++...
T Consensus 113 ~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~ 186 (780)
T 2z6g_A 113 FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186 (780)
T ss_dssp -------------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred ccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHH
Confidence 444455566666666666666777777655332 234678999999999999999999999999887530
Q ss_pred CCChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 398 CLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 398 ~~~l~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
......+++.+...|.+. ++.+|..++..|.. |.... .....+. ...+|.++.+|.+.++.||..|+.+|..|...
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN-LSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 011235777888888754 89999999988887 43322 1111111 35899999999999999999999999998865
Q ss_pred hChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCC
Q 000166 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASK 555 (1974)
Q Consensus 476 ~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~ 555 (1974)
-.+. +..+.+ . + .
T Consensus 265 ~~~~-------------~~~v~~---~-g----------~---------------------------------------- 277 (780)
T 2z6g_A 265 QEGA-------------KMAVRL---A-G----------G---------------------------------------- 277 (780)
T ss_dssp STTH-------------HHHHHH---T-T----------H----------------------------------------
T ss_pred Chhh-------------HHHHHH---c-C----------C----------------------------------------
Confidence 3311 111110 0 0 0
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh----
Q 000166 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA---- 631 (1974)
Q Consensus 556 k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~---- 631 (1974)
-+.++..|.+.+|+.|-.+...+..+...
T Consensus 278 -----------------------------------------------v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~ 310 (780)
T 2z6g_A 278 -----------------------------------------------LQKMVALLNKTNVKFLAITTDCLQILAYGNQES 310 (780)
T ss_dssp -----------------------------------------------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH
Confidence 00112222233333333333322211100
Q ss_pred ---hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHH
Q 000166 632 ---VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTT 708 (1974)
Q Consensus 632 ---~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~ 708 (1974)
+-. ....+.|++.+... +.-.+......++..++. +. ..+. .
T Consensus 311 ~~~i~~-~~~i~~Lv~lL~~~-----~~~~~~~~a~~aL~~Ls~-~~---------------------~~~~-------~ 355 (780)
T 2z6g_A 311 KLIILA-SGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSV-CS---------------------SNKP-------A 355 (780)
T ss_dssp HHHHHT-TTHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHT-ST---------------------THHH-------H
T ss_pred HHHHHH-cCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHhhc-Ch---------------------HHHH-------H
Confidence 000 12245566655311 122222333344443332 10 0000 0
Q ss_pred HHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHh
Q 000166 709 FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1974)
Q Consensus 709 ~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~ 788 (1974)
+.+. -++..++..+ .+.++.++..++..+..+..... .......+|..+... |.+.|+.||..|..+|+.+-.
T Consensus 356 i~~~----g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 356 IVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT-KQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHT----THHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCT-TCSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTS
T ss_pred HHHh----chHHHHHHHH-cCCchHHHHHHHHHHHHHhccch-hhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHh
Confidence 0110 1233344443 34567777777666665554332 223456788888888 999999999999999986643
Q ss_pred hhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCC-C
Q 000166 789 FVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-P 865 (1974)
Q Consensus 789 ~~G~~l~~~l--~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d-~ 865 (1974)
. .+..+..+ .+.=| .|+.-+.+ .
T Consensus 429 ~-~~~~~~~i~~~g~i~-----------------------------------------------------~Lv~lL~~~~ 454 (780)
T 2z6g_A 429 N-NYKNKMMVCQVGGIE-----------------------------------------------------ALVRTVLRAG 454 (780)
T ss_dssp S-CHHHHHHHHTTTHHH-----------------------------------------------------HHHHHHHHHT
T ss_pred C-CHHHHHHHHHCCCHH-----------------------------------------------------HHHHHHHccC
Confidence 1 11122111 11112 23333332 2
Q ss_pred Ch-HHHHHHHHHHHHHHHHc------ccCCCCCCccchHHHHhhhccchhH-hHHHHHHHHHHHHHHhcChhHHhhh--h
Q 000166 866 DW-KVRLESIEAVNKILEEA------NKRIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSS--K 935 (1974)
Q Consensus 866 ~W-K~RkEaLe~v~~il~~a------nkrI~p~~~geL~~aLk~Rl~DsNk-~lv~~al~ii~~lA~amG~~~~k~~--k 935 (1974)
+| .+|..|+..|..|.... ...|.. ...+..|-..|.+.+. .++..|+.+++.|+. ++...... .
T Consensus 455 ~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~---~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~ 529 (780)
T 2z6g_A 455 DREDITEPAICALRHLTSRHQDAEMAQNAVRL---HYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQ 529 (780)
T ss_dssp TCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH---TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH---cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHC
Confidence 34 67777777777664210 001111 1235667677766664 889999999999984 54444322 2
Q ss_pred hhhHHHHHHhccCc----------------------hhHHHHHHHHHHHHHHh------ccchhhhHHHHHHHhcccCCc
Q 000166 936 GVLSDILKCLGDNK----------------------KHMRECTLTVLDAWLAA------VHLDKMVPYVTTALTDAKLGA 987 (1974)
Q Consensus 936 ~l~~~il~~l~D~K----------------------~~vR~aa~~alda~~~~------~gl~~~~~~i~~~L~~~~~~p 987 (1974)
.++|.+++.|.+.. ..++.++..||...... ..-...++.+...|.++ ++
T Consensus 530 g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~ 607 (780)
T 2z6g_A 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IE 607 (780)
T ss_dssp THHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CH
T ss_pred CCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CH
Confidence 57788888886643 34566666666653210 11123456667777754 56
Q ss_pred chHHHHHHHHHHHhccCCCC-cch--hhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcC
Q 000166 988 EGRKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1974)
Q Consensus 988 ~~R~e~l~wL~~~l~~~~~~-~~~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1974)
..|.....-|..-. ..+.. ..+ ...+.++...+.|.+.+||..|..+|..+...-.
T Consensus 608 ~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 67777666555322 11111 011 1245668888999999999999999998877655
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.37 E-value=0.00045 Score=90.26 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHH
Q 000166 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRD 463 (1974)
Q Consensus 384 eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~ 463 (1974)
+++...+-.+.. | .......-++...+.+++..+|.-...++...+...+ . ++--.+..+.+-|+|+++-||-
T Consensus 53 ~~l~kli~~~~~-G-~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~-e----~~~l~in~l~kDL~~~n~~vr~ 125 (618)
T 1w63_A 53 RNVAKLLYMHML-G-YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQ-D----VHLLMTNCIKNDLNHSTQFVQG 125 (618)
T ss_dssp HHHHHHHHHHHT-T-CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH-H----HHHHHHHHHHHHHSCSSSHHHH
T ss_pred HHHHHHHHHHHc-C-CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc-H----HHHHHHHHHHHhcCCCCHhHHH
Confidence 445455444332 2 2445566677778888888888887777777665431 1 1234677888888999999998
Q ss_pred HHHHHHHHHH
Q 000166 464 AAFSVLAAIA 473 (1974)
Q Consensus 464 aA~~~l~~lm 473 (1974)
.|..+|+.+.
T Consensus 126 lAL~~L~~i~ 135 (618)
T 1w63_A 126 LALCTLGCMG 135 (618)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888887764
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.34 E-value=8.6e-05 Score=94.42 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=123.0
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcc-cCCCCCCccchHHHHhhhccchh-HhHHHHHHHHHHHHHHhcChhHHhh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEEAN-KRIQPAGTGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKS 933 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~an-krI~p~~~geL~~aLk~Rl~DsN-k~lv~~al~ii~~lA~amG~~~~k~ 933 (1974)
+.++..+.+.+|..|.+|+..+..++.... +.+..-.-..++..|-.-|.+.+ ..+...|+.+++.|+..- +.....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~ 155 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKV 155 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHH
Confidence 568889999999999999999999985321 11111111346777777887766 899999999999999742 333332
Q ss_pred --hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 934 --SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 934 --~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
....+|.++..|.+....||..|..+|..+..... . ...++.+...|.+. .++..+..+. |....|...
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~-~~L~~L~~~ 233 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNAT-WTLSNFCRG 233 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHH-HHHHHHHCS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHH-HHHHHHHcC
Confidence 23689999999999999999999999988864321 0 12345566666322 2455555554 433445443
Q ss_pred CCCc---chhhhhhhHhhhccCCChHHHHHHHHHHHHHH
Q 000166 1005 SGFP---DAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1974)
Q Consensus 1005 ~~~~---~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1974)
.... .....+.+++..|.+.+.+||..|-.+|..+.
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 2211 12345556777889999999999888887665
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.29 E-value=0.00082 Score=87.96 Aligned_cols=497 Identities=13% Similarity=0.091 Sum_probs=269.7
Q ss_pred CCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccC-CHHHHHHHHHHHHHH
Q 000166 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEK-KPTVAESLTQTLQAM 393 (1974)
Q Consensus 316 pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~~~~l~~lLeklKEK-K~~V~eA~~~aLda~ 393 (1974)
+++..|. +..|.+++.|.|..+...|+.+|+.|+..-.....- ....+++.+++.|++. -+.++..+..+|-.+
T Consensus 9 ~~~~~g~----i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 9 AELATRA----IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp ---CTTT----HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hhhhhch----HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444454 444555667889999999999999999865421111 1236789999999875 788888888888765
Q ss_pred HHhcCCC---h--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHH
Q 000166 394 HKAGCLN---L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFS 467 (1974)
Q Consensus 394 ~~~~~~~---l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~ 467 (1974)
... ... + ...++.+...+++.++.++..++.-|........... ..+. ...+|.++.+|.+.++.+|.++..
T Consensus 85 s~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 85 SHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp TTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred hcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence 432 000 0 1356778889999999999999998888776542211 1122 458999999999999999999998
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000166 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1974)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p 547 (1974)
+|..+.. |.......+...+. -..+.+++...
T Consensus 163 ~L~~La~--~~~~~~~~i~~~g~--v~~Lv~lL~~~-------------------------------------------- 194 (644)
T 2z6h_A 163 CLQILAY--GNQESKLIILASGG--PQALVNIMRTY-------------------------------------------- 194 (644)
T ss_dssp HHHHHHT--TCHHHHHHHHHTTH--HHHHHHHHTTC--------------------------------------------
T ss_pred HHHHHHh--cCcHHHHHHHHcCC--hHHHHHHHHcC--------------------------------------------
Confidence 8887764 21111111111110 11122222110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhh-ccHHHHHHHHHHHH
Q 000166 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLR 626 (1974)
Q Consensus 548 ~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s-~~WK~RL~a~E~l~ 626 (1974)
+.+++...+. .++..|.. ..-+..+
T Consensus 195 ------------------------------------------~~~~~~~~a~-----~~L~nLs~~~~~~~~l------- 220 (644)
T 2z6h_A 195 ------------------------------------------TYEKLLWTTS-----RVLKVLSVCSSNKPAI------- 220 (644)
T ss_dssp ------------------------------------------CCHHHHHHHH-----HHHHHHTTCTTHHHHH-------
T ss_pred ------------------------------------------ChHHHHHHHH-----HHHHHHhcCcccHHHH-------
Confidence 0001100000 00000100 0000000
Q ss_pred HHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhcc--ccchhhhHHHH
Q 000166 627 QQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERV--ADIKTRAHAMK 704 (1974)
Q Consensus 627 ~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKl--gD~K~r~~a~e 704 (1974)
++. ...+.|+.++ ++.+..+...++.++..++.....+. ...-+++.++.-+ .|..++..+..
T Consensus 221 --~~~-----g~l~~L~~ll------~~~~~~~~~~a~~~L~nL~~~~~~~~--~~~~~i~~Lv~lL~~~d~~v~~~a~~ 285 (644)
T 2z6h_A 221 --VEA-----GGMQALGLHL------TDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAG 285 (644)
T ss_dssp --HHT-----THHHHHHTTT------TCSCHHHHHHHHHHHHHHGGGCTTCC--SCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred --HHC-----CCHHHHHHHH------hcCCHHHHHHHHHHHHHHhhcchhhh--hhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 000 0112222222 23355566666666666554322211 1122344444333 34567777777
Q ss_pred HHHHHHHhhc--hH-----hHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHHHhccC-----ccchHhHHHHHhhhcCCCc
Q 000166 705 CLTTFSEAVG--PG-----FIFERLYKIMKDHK-NPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSS 771 (1974)
Q Consensus 705 ~L~~~aE~~~--p~-----~V~~~l~~~~~~~K-nPKv~ae~l~wl~~ai~eFG~~-----~l~~K~lI~~~k~~~L~~s 771 (1974)
+|..++.... -+ -++..++..+.... ++.++..++..|..+....+-. .+--...++.+..+ |.+.
T Consensus 286 aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l-L~~~ 364 (644)
T 2z6h_A 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPP 364 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT-TSTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH-hCcc
Confidence 7776665311 11 14556666654433 3788888888777764211100 00001345566666 8877
Q ss_pred c-HHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccc
Q 000166 772 A-AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (1974)
Q Consensus 772 N-~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDI 850 (1974)
+ +.||.+|..+|+.+.. |+..+..+ -.
T Consensus 365 ~~~~v~~~a~~~L~nLa~--~~~~~~~i---------------~~----------------------------------- 392 (644)
T 2z6h_A 365 SHWPLIKATVGLIRNLAL--CPANHAPL---------------RE----------------------------------- 392 (644)
T ss_dssp CCHHHHHHHHHHHHHHTT--SGGGHHHH---------------HH-----------------------------------
T ss_pred CchHHHHHHHHHHHHHcc--CHHHHHHH---------------HH-----------------------------------
Confidence 5 7999999988877753 22211111 00
Q ss_pred ccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhH
Q 000166 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (1974)
Q Consensus 851 s~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~ 930 (1974)
..+-+.|+.-+.+.+|.+|+||.-.+. |..+..+. ++..++..++.++..++..- ..
T Consensus 393 -~~~i~~Lv~lL~~~~~~vr~~a~~al~------n~~~~~~~--------------~~~~v~~~a~~aL~~La~~~--~~ 449 (644)
T 2z6h_A 393 -QGAIPRLVQLLVRAHQDTQRRTSMGGT------QQQFVEGV--------------RMEEIVEGCTGALHILARDV--HN 449 (644)
T ss_dssp -TTHHHHHHHHHHHHHHHHTTC----------------CCSS--------------CHHHHHHHHHHHHHHHTTSH--HH
T ss_pred -cCCHHHHHHHHhccchhhhhHhhhccc------cchhcccc--------------cHHHHHHHHHHHHHHHhcCH--HH
Confidence 001234566666677777777665432 11111111 24456666777777666432 22
Q ss_pred Hhh--hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc
Q 000166 931 EKS--SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1974)
Q Consensus 931 ~k~--~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~ 1008 (1974)
..+ ....+|+++..|.+.-..||..+..+|...... +.....+..
T Consensus 450 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-------~~~~~~i~~-------------------------- 496 (644)
T 2z6h_A 450 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-------KEAAEAIEA-------------------------- 496 (644)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-------HHHHHHHHH--------------------------
T ss_pred HHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-------HHHHHHHHH--------------------------
Confidence 222 235789999999999999999988877665321 111111110
Q ss_pred chhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHH
Q 000166 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQE 1046 (1974)
Q Consensus 1009 ~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~ 1046 (1974)
...+.++...+.|.+++||..|..+|..+..+-+.+
T Consensus 497 --~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~ 532 (644)
T 2z6h_A 497 --EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532 (644)
T ss_dssp --TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHH
T ss_pred --cCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHh
Confidence 112456777789999999999999999887766543
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.27 E-value=0.00033 Score=93.96 Aligned_cols=518 Identities=13% Similarity=0.077 Sum_probs=292.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-cchhhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFL 367 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~-~y~~~~ 367 (1974)
.+...|.+.....|..+++.+..+. ...+. ...+..|.+++.+.|..|...|+.+|..|+..-..... .....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~-~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQD-DAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhh-HHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5888888888888888888765431 11221 34567777777788999999999999999975321110 012468
Q ss_pred HHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHh
Q 000166 368 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1974)
Q Consensus 368 l~~lLeklKEK-K~~V~eA~~~aLda~~~~~~----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~ 442 (1974)
++.|++.|+.. .+.++..+..+|-.+..... +.-...++.+...|++.++.+|.+++..|........... ..+
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHH
Confidence 99999999855 78899888888877643200 0001356778889999999999999999988776532211 111
Q ss_pred h-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCC
Q 000166 443 H-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (1974)
Q Consensus 443 ~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (1974)
. ...+|.++.+|.+.+..||..+..+|..+.. |.......+...+. -..+..++...
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~------------------ 330 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY------------------ 330 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC------------------
Confidence 1 4589999999999999999999999885542 21111111100000 00111111000
Q ss_pred CCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhcc
Q 000166 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (1974)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l 601 (1974)
+.+.....+.
T Consensus 331 --------------------------------------------------------------------~~~~~~~~a~-- 340 (780)
T 2z6g_A 331 --------------------------------------------------------------------TYEKLLWTTS-- 340 (780)
T ss_dssp --------------------------------------------------------------------CCHHHHHHHH--
T ss_pred --------------------------------------------------------------------CHHHHHHHHH--
Confidence 0011111110
Q ss_pred CcHhHHHhhhh-ccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCcc
Q 000166 602 IPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1974)
Q Consensus 602 ~~~~i~~~L~s-~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~ 680 (1974)
.++..|.. ...+..+ ++. .....|+.++ .+.+..+....+.++..++.....+.
T Consensus 341 ---~aL~~Ls~~~~~~~~i---------~~~-----g~l~~Ll~lL------~~~~~~~~~~a~~~L~~L~~~~~~~~-- 395 (780)
T 2z6g_A 341 ---RVLKVLSVCSSNKPAI---------VEA-----GGMQALGLHL------TDPSQRLVQNCLWTLRNLSDAATKQE-- 395 (780)
T ss_dssp ---HHHHHHHTSTTHHHHH---------HHT-----THHHHHGGGT------TCSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred ---HHHHHhhcChHHHHHH---------HHh-----chHHHHHHHH------cCCchHHHHHHHHHHHHHhccchhhh--
Confidence 11111111 1111111 000 0123333333 34466778888888888876543321
Q ss_pred chhhhccchhhccc--cchhhhHHHHHHHHHHHhhch-------HhHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHHHhc
Q 000166 681 CVVLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNP-KVLSEGILWMVSAVEDFG 750 (1974)
Q Consensus 681 ~~~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~p-------~~V~~~l~~~~~~~KnP-Kv~ae~l~wl~~ai~eFG 750 (1974)
...-+++.++.-+. |..++..+..+|..++..... .-++..++..+....++ .++..++..|..+....+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 12345666665444 456788888888777653110 12456666666544444 888888877765532111
Q ss_pred cC-----ccchHhHHHHHhhhcCCCccH-HHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCC
Q 000166 751 VS-----HLKLKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTV 822 (1974)
Q Consensus 751 ~~-----~l~~K~lI~~~k~~~L~~sN~-~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~Ie~EF~K~~~~~~p 822 (1974)
-. .+--...++.+..+ |.+.+. .||.+|..+|+.+-. |+.-+..+ .+.=|.++..|...-..+..+..-
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 00 00001234555555 777774 999999999998874 55544444 345577777776543222110000
Q ss_pred CCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH-cc-cCCCCCCccchHHHH
Q 000166 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE-AN-KRIQPAGTGELFGGL 900 (1974)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~-an-krI~p~~~geL~~aL 900 (1974)
+ .+. -+ +.. +...-.+|..++..+..+... .| ..|.. ...+..|
T Consensus 553 a----------------l~n--q~---~~~----------~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~~~i~~L 598 (780)
T 2z6g_A 553 G----------------GTQ--QQ---FVE----------GVRMEEIVEACTGALHILARDIHNRIVIRG---LNTIPLF 598 (780)
T ss_dssp -----------------------C---CST----------TCCHHHHHHHHHHHHHHHTTSHHHHHHHHH---TCCHHHH
T ss_pred c----------------ccc--ch---hhc----------ccChHHHHHHHHHHHHHHhcChhhHHHHHH---CCcHHHH
Confidence 0 000 00 000 001122455566666554310 00 01211 2257778
Q ss_pred hhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000166 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1974)
Q Consensus 901 k~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1974)
...|.+.|.+++..|+.++..++. .+....... ..++.++..+.|....||..|..||..+.....
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 888899999999999999988863 244443322 367889999999999999999999999887554
No 35
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.25 E-value=1.8e-05 Score=88.11 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=138.1
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
+.+...+.+..|..|..|++.|..+.. .+.+..|...+.|.|..|...|+.+++.+.. ...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 357788899999999999999987643 3567778888999999999999999988752 356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhH
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1974)
++.+++.++|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++.-|.+.- . ...+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 145 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 145 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-------HHHH
Confidence 8999999999999999988887765532 356788889999999999999888887651 1 2357
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000166 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1974)
+.+..+++|.++.||.+|..+|+.+-.--.-..+..++.+=++.-|....+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999987321112335555555566555555665554
No 36
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.24 E-value=2.1e-05 Score=86.98 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=134.6
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
+.|.+.+.+..|..|..|++.|..+.. .+.+..|...+.|.|..|...|+.+++.+.. ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 468889999999999999999987643 2456777788889999999999999988742 256
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhH
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1974)
++.+++.+.|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++..|.+.- . ...+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 140 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 140 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----C-------HHHH
Confidence 8999999999999999988888776532 357788889999999999999888877651 1 3457
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000166 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1974)
+.+..+++|.++.||.+|..+|+.+-.--....+..++.+=++.-|....+.+.
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 889999999999999999999998721111123444444445544444444443
No 37
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.23 E-value=1.8e-05 Score=88.28 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=137.0
Q ss_pred HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCC
Q 000166 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1974)
Q Consensus 757 K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1974)
...++.+... |.+.|+.||..|+..|+.+. . +
T Consensus 18 ~~~~~~L~~~-L~~~~~~vR~~A~~~L~~~~----~----------------------------~--------------- 49 (211)
T 3ltm_A 18 PEKVEMYIKN-LQDDSYYVRRAAAYALGKIG----D----------------------------E--------------- 49 (211)
T ss_dssp GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHC----C----------------------------G---------------
T ss_pred HhHHHHHHHH-HcCCCHHHHHHHHHHHHHhC----C----------------------------c---------------
Confidence 4556666666 89999999999999887532 1 0
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000166 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1974)
Q Consensus 837 ~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al 916 (1974)
...+.|+..+.|.+|.+|..|+..+..+-. .+.+..|...|.|.|..+...|+
T Consensus 50 ----------------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~ 102 (211)
T 3ltm_A 50 ----------------RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAA 102 (211)
T ss_dssp ----------------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred ----------------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHH
Confidence 013457777888999999999998876531 35677788888999999999988
Q ss_pred HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHH
Q 000166 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (1974)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~w 996 (1974)
..++.+.. ...++.++..|.|..+.||.++..+|..+ |-...++.+...|.++ ++..|..+...
T Consensus 103 ~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~a 166 (211)
T 3ltm_A 103 VALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDE--DGWVRQSAADA 166 (211)
T ss_dssp HHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred HHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 88877632 23568888899999999999999998776 4456677778888755 57888888887
Q ss_pred HHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 997 LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 997 L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
|.+.- ....+..+...|.|.++.||.+|..+|..+-.
T Consensus 167 L~~~~--------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 167 LGEIG--------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHC--------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHhC--------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 77541 12344456667889999999999998866533
No 38
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.21 E-value=0.034 Score=76.13 Aligned_cols=319 Identities=12% Similarity=0.137 Sum_probs=177.5
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCC------------CCccchhhhccchhhccc----------c-------chhh
Q 000166 649 LPGWSEKNVQVQQQVIEVINYLAATATK------------FPKKCVVLCLLGISERVA----------D-------IKTR 699 (1974)
Q Consensus 649 ~PgwkesNfqV~~k~leil~~la~~~~~------------fs~~~~~~~l~~lveKlg----------D-------~K~r 699 (1974)
.||+...+-.|....++....+++.... .-+.....+++.++.|+. | .-.|
T Consensus 359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence 5776655666677777766665542100 012233344455555541 1 1356
Q ss_pred hHHHHHHHHHHHhhchHhHHHHHHHhhh---hc-----CChhhHHHHHHHHHHHHHHhccCc-cchHhHHHHHhhhcCC-
Q 000166 700 AHAMKCLTTFSEAVGPGFIFERLYKIMK---DH-----KNPKVLSEGILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQ- 769 (1974)
Q Consensus 700 ~~a~e~L~~~aE~~~p~~V~~~l~~~~~---~~-----KnPKv~ae~l~wl~~ai~eFG~~~-l~~K~lI~~~k~~~L~- 769 (1974)
..+.++|..++...+ +.++..++..+. .+ .+++.+..++-.+..+.+...-.. -.+..++..+.. |.
T Consensus 439 ~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~--l~~ 515 (971)
T 2x1g_F 439 QDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAE--IPY 515 (971)
T ss_dssp HHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHH--SCT
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHh--cCc
Confidence 788899999998776 444444443321 22 688888888877777654333211 123456665554 44
Q ss_pred -CccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcc
Q 000166 770 -SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRE 848 (1974)
Q Consensus 770 -~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRv 848 (1974)
+.+|.||..|+.++|.+..|+++.- .|+..+=|.++..++
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~-------------------------------------- 556 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGLN-------------------------------------- 556 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH--------------------------------------
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhC--------------------------------------
Confidence 3599999999999999999887532 344333333333331
Q ss_pred ccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc--hhHhHHHHHHHHHHHHHHhc
Q 000166 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAM 926 (1974)
Q Consensus 849 DIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~D--sNk~lv~~al~ii~~lA~am 926 (1974)
.+++..|-..+..++++....|.|-. .+|+..|-.-+.. ........++.+++.++.++
T Consensus 557 ------------------~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 557 ------------------SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ------------------SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 22355666667777765555566553 6677766666643 33567778889999999988
Q ss_pred C-hhHHhhhhhhhHHHHHHhcc---C---chhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHH------H
Q 000166 927 G-PAVEKSSKGVLSDILKCLGD---N---KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKD------L 993 (1974)
Q Consensus 927 G-~~~~k~~k~l~~~il~~l~D---~---K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e------~ 993 (1974)
+ ..+.+|...++++++..+.. + ...-+..+..+++... .+...+.... .+ .+++ +
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~----------~~~~~l~~~~-~~-~~~~~~~~~~~ 685 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS----------TLFSSLNTDV-DE-QATDQPIVQPV 685 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH----------HHHHHHTC---------------CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH----------HHHhhcCCCc-Cc-ccccccCCCch
Confidence 7 56778888888888876652 1 1112333444443331 1112222100 00 0000 0
Q ss_pred HHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHh
Q 000166 994 FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1974)
Q Consensus 994 l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~ 1052 (1974)
...+ ....+++.-++... ..+.+|+..+..+++.++..+|.+ +.+++
T Consensus 686 ~~~~----------~~i~~~l~~~l~~~-~~~~~v~e~~~~~~~~~~~~~~~~-~~p~l 732 (971)
T 2x1g_F 686 LLVM----------QRTMPIFKRIAEMW-VEEIDVLEAACSAMKHAITNLRSS-FQPML 732 (971)
T ss_dssp HHHH----------HTTHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred HHHH----------HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHhhhhh-ccccH
Confidence 0000 12333333333332 247899999999999999998876 45553
No 39
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.19 E-value=0.01 Score=74.70 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=103.6
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCCC---
Q 000166 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN--- 400 (1974)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~~~~l~~lLeklKEK-K~~V~eA~~~aLda~~~~~~~~--- 400 (1974)
.+..|-+.+.+.|..+...|+.++..|+..-...-.- .....++++++.++.. .+.++..+..+|-.+... ...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHH
Confidence 4556666777889999999999999999653211000 1236789999999765 678888887887776431 000
Q ss_pred h--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 401 L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 401 l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+ ...++.+...+++.+|.++.+++..|.......+... ..+. ...+|.++..+.+.++.+|..+..+|..+.
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH-HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 1356778888999999999999998888765432211 1111 457999999999999999999988887553
No 40
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.18 E-value=0.031 Score=76.22 Aligned_cols=348 Identities=11% Similarity=0.078 Sum_probs=209.9
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhcc-ccchhhhHHHHHHHHHHHhhc--hH---hHHHHHHHhhh
Q 000166 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERV-ADIKTRAHAMKCLTTFSEAVG--PG---FIFERLYKIMK 727 (1974)
Q Consensus 654 esNfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKl-gD~K~r~~a~e~L~~~aE~~~--p~---~V~~~l~~~~~ 727 (1974)
..|.+.....+-++..+++.+..-.......+++.+..-. .++++|..+..++..|++-.. ++ .|+..++.++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l- 538 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL- 538 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-
Confidence 4567777778888888887654322333333444322111 357799999999999998643 33 3455556554
Q ss_pred hcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC--ccHHHHHHHHHHHHHHHhhhC-chhHhhhhcchH
Q 000166 728 DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKP 803 (1974)
Q Consensus 728 ~~KnPKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~--sN~~VR~aAi~Ll~~ly~~~G-~~l~~~l~dlkp 803 (1974)
.+|+|+..|+.-+..+.++++-...+ +..++..+-.. +.+ .+..+|......++.+-..+| +....+++.+=+
T Consensus 539 --~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~-l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~ 615 (963)
T 2x19_B 539 --GNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV-LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLIS 615 (963)
T ss_dssp --TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34999999999999999887754333 36777776665 554 467899999999999988887 566677765544
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000166 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE 883 (1974)
Q Consensus 804 all~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ 883 (1974)
.+...++.-. +. +.. ++. -+.+...++.+..++..
T Consensus 616 ~l~~~l~~~~-~~----~~~--------------------------------~~~--------~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 616 PYIQQLEKLA-EE----IPN--------------------------------PSN--------KLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHHHHH-SS----CSC--------------------------------HHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hC----CCC--------------------------------HHH--------HHHHHHHHHHHHHHHHH
Confidence 4444443321 11 000 000 01122333333333332
Q ss_pred cccCCCCC---------------------CccchHHHHhhhcc-c-hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHH
Q 000166 884 ANKRIQPA---------------------GTGELFGGLRGRLY-D-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1974)
Q Consensus 884 ankrI~p~---------------------~~geL~~aLk~Rl~-D-sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~ 940 (1974)
-..++... .+..+++.+..-+. + .|..+...++.+++.++..+|..|.+|.-.+++.
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~ 730 (963)
T 2x19_B 651 LDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM 730 (963)
T ss_dssp CCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHH
T ss_pred cCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 11111100 01112222222221 1 2347888899999999999999998887777777
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHH----HHHH----Hh-cccCCcchHHHHHHHHHHHhccCCC-
Q 000166 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPY----VTTA----LT-DAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (1974)
Q Consensus 941 il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~----i~~~----L~-~~~~~p~~R~e~l~wL~~~l~~~~~- 1006 (1974)
++..+.... -.+.+..+..++...|.+. .++. +... +. +....|+.|.+.+.+|...+..++.
T Consensus 731 l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 731 LGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp HHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH
Confidence 776665421 1256666777766434332 2222 1221 11 2223589999999999988876654
Q ss_pred ---Ccc-hhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcC-HHHHHHHhh
Q 000166 1007 ---FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG-QETIEKNLK 1053 (1974)
Q Consensus 1007 ---~~~-~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G-~~~~~~~~~ 1053 (1974)
++. ...++.-+..+|.+...+|-+++-.++..++...+ .+.+...+.
T Consensus 808 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 859 (963)
T 2x19_B 808 FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQ 859 (963)
T ss_dssp GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTT
T ss_pred HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 233 55556667778999999999999999999988765 334444333
No 41
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.12 E-value=0.1 Score=71.17 Aligned_cols=212 Identities=15% Similarity=0.220 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHHHhhch---HhHHHHHHHhhh---hcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC
Q 000166 698 TRAHAMKCLTTFSEAVGP---GFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS 770 (1974)
Q Consensus 698 ~r~~a~e~L~~~aE~~~p---~~V~~~l~~~~~---~~KnPKv~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~k~~~L~~ 770 (1974)
.|..+.++|..++...+. .++++.+...+. .+.+++.+..++-+++.+.+...-..-+ +..++..+.. +.+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~ 500 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCC
Confidence 367788899999987763 233333333321 4568888888887777766543321111 2456665553 565
Q ss_pred ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccc
Q 000166 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (1974)
Q Consensus 771 sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDI 850 (1974)
.+|.||..++.++|..-.|+++.- .++..
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~-------------------------------------------------- 529 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHP-VMINS-------------------------------------------------- 529 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCH-HHHTT--------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCH-HHHHH--------------------------------------------------
Confidence 799999999999999888775321 22211
Q ss_pred ccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc--chhHhHHHHHHHHHHHHHHhcC-
Q 000166 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG- 927 (1974)
Q Consensus 851 s~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~--DsNk~lv~~al~ii~~lA~amG- 927 (1974)
+-+.++..|.+ -++|..|..++..++++..+.+.|-. .+|+..|-.-+. +.+.......+.+++.++.+++
T Consensus 530 ---vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 530 ---VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp ---THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred ---HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 11234444443 36788899999999988767788875 888888877664 3455677888999999999998
Q ss_pred hhHHhhhhhhhHHHHHHhcc---C--chhHH---HHHHHHHHHHHHhcc
Q 000166 928 PAVEKSSKGVLSDILKCLGD---N--KKHMR---ECTLTVLDAWLAAVH 968 (1974)
Q Consensus 928 ~~~~k~~k~l~~~il~~l~D---~--K~~vR---~aa~~alda~~~~~g 968 (1974)
..+.+|...++++++..+.. + .+..+ ...+++|..++..++
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 77889999999999887752 1 22233 355666666666654
No 42
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.08 E-value=0.0086 Score=82.08 Aligned_cols=284 Identities=12% Similarity=0.127 Sum_probs=174.9
Q ss_pred hHHHHHHHhhhhc--CChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhh----
Q 000166 717 FIFERLYKIMKDH--KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV---- 790 (1974)
Q Consensus 717 ~V~~~l~~~~~~~--KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~---- 790 (1974)
|+..++++.+... .+|.++..++..+++.-+.|. .-.+..++..+-.+ |.+.|+.||.+|...+..+-...
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~~~~ 531 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRESNT 531 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhcccccc
Confidence 3445566665332 289999999988887766552 12356777777775 99999999999999888765432
Q ss_pred -------CchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcC
Q 000166 791 -------GPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (1974)
Q Consensus 791 -------G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~ 863 (1974)
...+.+|+. .+++.|-.-+.+... .|.
T Consensus 532 ~~~~~~~~~~l~p~l~----~ll~~L~~ll~~~~~----~~~-------------------------------------- 565 (960)
T 1wa5_C 532 SPAFIFHKEDISNSTE----ILLKNLIALILKHGS----SPE-------------------------------------- 565 (960)
T ss_dssp SCCBSSCGGGTTTTHH----HHHHHHHHHHHTTCC----CHH--------------------------------------
T ss_pred cccccccHHHhhhhHH----HHHHHHHHHHHhccC----CCC--------------------------------------
Confidence 223445553 344444444443210 000
Q ss_pred CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-----chhHhHHHHHHHHHHHHHHhcCh-hHHhhhhhh
Q 000166 864 SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGP-AVEKSSKGV 937 (1974)
Q Consensus 864 d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~-----DsNk~lv~~al~ii~~lA~amG~-~~~k~~k~l 937 (1974)
+-++.-..++.+..++.....-+.|- +..|+..|..++. .+|+.+...++.+++.++.+.|+ .+.++...+
T Consensus 566 --~~~~~e~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~ 642 (960)
T 1wa5_C 566 --KLAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSM 642 (960)
T ss_dssp --HHTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred --cccccHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 00011256788888887666677774 3677777777763 35788888899999999999876 567888899
Q ss_pred hHHHHHHhccCchhHHHHHHHHHHHHHHhc-cchhhhHHHHHHHhcccC--CcchHHHHHHHHHHHhccCCCC-cchhhh
Q 000166 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAV-HLDKMVPYVTTALTDAKL--GAEGRKDLFDWLSKQLTGLSGF-PDAAHL 1013 (1974)
Q Consensus 938 ~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl~~~~~~i~~~L~~~~~--~p~~R~e~l~wL~~~l~~~~~~-~~~~~~ 1013 (1974)
+|.+...|......++..+.+.+....... ++.+.+..+...|-++.. ++.--..+...|...+...... .....+
T Consensus 643 ~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 722 (960)
T 1wa5_C 643 MPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPV 722 (960)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHH
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHH
Confidence 999999998777778888888888777664 333333333333321110 0111123344443332221110 001222
Q ss_pred hhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhc
Q 000166 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1974)
Q Consensus 1014 ~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~ 1054 (1974)
+.-+-.++.+++.+ ..|..+++.++.++|.+.+.+++..
T Consensus 723 l~~~~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~~yl~~ 761 (960)
T 1wa5_C 723 LGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIKQ 761 (960)
T ss_dssp HHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHHHHhCCCccc--chHHHHHHHHHHHCCHHHHHHHHHH
Confidence 22233456777644 7889999999999998877666543
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.06 E-value=5.7e-05 Score=83.43 Aligned_cols=182 Identities=20% Similarity=0.172 Sum_probs=133.0
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000166 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1974)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1974)
...+.+++.++|++|.+|..|++.+..+-. .+.+..|...|.|.|..+...|+..++.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 346788999999999999999999976431 3567788888899999999999988877632
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000166 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1974)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~ 1012 (1974)
...++.++..|.|..+.||.+++.+|..+ |-...++.+...|.++ ++..|..+...|.+. . ...
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~ 138 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DER 138 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-T-------CGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------CHH
Confidence 24578899999999999999999999875 4455778888888765 688899888887653 1 123
Q ss_pred hhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHh
Q 000166 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1069 (1974)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k 1069 (1974)
.+..+...|.|.++.||..|..+|+.+-..-..+.+...+++=.+..+....+.|.+
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 555678889999999999999999877211112233333333334444444444444
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.05 E-value=0.00015 Score=94.69 Aligned_cols=400 Identities=14% Similarity=0.104 Sum_probs=228.8
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchh
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~~ 683 (1974)
.++.+.|.+.+=..|..++..+.-..-...+.....--+++.+. .+|+..=+.+.=.+..++.. ..-.+-
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~------s~~~~~Krl~Yl~~~~~~~~----~~e~~~ 106 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA------SQKFTDKRIGYLGAMLLLDE----RQDVHL 106 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH------SSSHHHHHHHHHHHHHHCCC----CHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc------CCchHHHHHHHHHHHHHhCC----CcHHHH
Confidence 35556676666666777777776433222111111222334432 45555544444444433321 222234
Q ss_pred hhccchhhccccc--hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000166 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1974)
Q Consensus 684 ~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~ 761 (1974)
++++.+..-+.|. -.|..|-.+|..+....-.+.++..+.+. ..+.+|-|+..++..+..+..... .. +..+++
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~-L~~~~~~VRk~A~~al~~l~~~~p-~~--v~~~~~ 182 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKL-LKTSNSYLRKKAALCAVHVIRKVP-EL--MEMFLP 182 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHSCCHHHHHHHHHHHHHHHHHCG-GG--GGGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHCh-HH--HHHHHH
Confidence 5666666555553 35666555555444322223445566655 478999999999999999987543 22 347788
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccc-ccCcCCCCC-
Q 000166 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA-SESTSSVSS- 839 (1974)
Q Consensus 762 ~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~-~~~~~~~~~- 839 (1974)
.+..+ |.+.|+.|+.+|+.+|+.+...- +.+...+..+=|.+...|..-... +..+ .....+ .++-....-
T Consensus 183 ~l~~l-L~D~d~~V~~~Al~~L~~i~~~~-~~~~~~~~~~v~~l~~~L~~~~~~--~~~~---~~~~~~~~~~~~q~~il 255 (618)
T 1w63_A 183 ATKNL-LNEKNHGVLHTSVVLLTEMCERS-PDMLAHFRKLVPQLVRILKNLIMS--GYSP---EHDVSGISDPFLQVRIL 255 (618)
T ss_dssp GTTTS-TTCCCHHHHHHHHHHHHHHCCSH-HHHHHHHHTTHHHHHHHHHHHHHS--CCCT---TTCSSSSSCHHHHHHHH
T ss_pred HHHHH-hCCCCHhHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHcC--CCCc---cccccCCCCChHHHHHH
Confidence 88888 99999999999999999986542 223334445556666665542221 0000 000000 000000000
Q ss_pred CCCCCCCccc--cccCCcHHHHhhc-------CCCChHHHHHHHHHHHHHHHHcccCCCCCC--ccchHHHHhhhccchh
Q 000166 840 GGSDGLPRED--ISGKFTPTLVKSL-------ESPDWKVRLESIEAVNKILEEANKRIQPAG--TGELFGGLRGRLYDSN 908 (1974)
Q Consensus 840 ~~~d~lpRvD--Is~kit~~l~~~l-------~d~~WK~RkEaLe~v~~il~~ankrI~p~~--~geL~~aLk~Rl~DsN 908 (1974)
..-..+.+.| ...++- +++..+ ...+--+..|+...+ +. +.+.. .......|..-+.+++
T Consensus 256 ~~L~~l~~~~~~~~~~~~-~~L~~l~~~~~~~~~~~~aV~~ea~~~i---~~-----l~~~~~l~~~a~~~L~~~L~~~d 326 (618)
T 1w63_A 256 RLLRILGRNDDDSSEAMN-DILAQVATNTETSKNVGNAILYETVLTI---MD-----IKSESGLRVLAINILGRFLLNND 326 (618)
T ss_dssp HHHHHHTTTCHHHHHTTH-HHHHHHHHTSCCSSTHHHHHHHHHHHHH---HH-----SCCCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHhCCCCHHHHHHHH-HHHHHHHhccccccchHHHHHHHHHHHH---Hh-----cCCCHHHHHHHHHHHHHHHhCCC
Confidence 0000000000 111111 122221 122334555554444 32 22211 1123556666678888
Q ss_pred HhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcc
Q 000166 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 988 (1974)
Q Consensus 909 k~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~ 988 (1974)
.++.-.||..++.++..-...|. ...+.|+.+|.|.-..||..++++|...+....++.+++.+..++.+. +++
T Consensus 327 ~~vr~~aL~~L~~i~~~~p~~~~----~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~--d~e 400 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQTDHNAVQ----RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSC--EPE 400 (618)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHG----GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHC--CHH
T ss_pred CchHHHHHHHHHHHHhhCHHHHH----HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhC--CHH
Confidence 89999999999999976433333 355688999999999999999999999999988999999999999854 578
Q ss_pred hHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 989 ~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
.|.++..+|.+.-.... ++....+.-++..|.+....|+..+-.++-.++.
T Consensus 401 ~r~~~v~~I~~la~k~~--~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 401 FKADCASGIFLAAEKYA--PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp HHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 99999999987765543 2333334446666777666666654444444444
No 45
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.01 E-value=0.11 Score=71.07 Aligned_cols=283 Identities=9% Similarity=0.048 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHHHHHHhhc-------------h----H
Q 000166 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG-------------P----G 716 (1974)
Q Consensus 656 NfqV~~k~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~-------------p----~ 716 (1974)
+..|....+.++..+++. +.+.....+++.++..+.|. .++..|..+|..|+|... . .
T Consensus 471 ~p~vr~~a~~~lg~~~~~---~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQ---LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp CHHHHHHHHHHHHHTGGG---SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CceehHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 888888888888877663 34555666778888877774 578999999999998421 1 2
Q ss_pred hHHHHHHHhhhhcCC---hh--hHHHHHHHHHHHHHHhccCccc-hHhHHHHH----hhhcCCCccHHHHHHHHHHHHHH
Q 000166 717 FIFERLYKIMKDHKN---PK--VLSEGILWMVSAVEDFGVSHLK-LKDLIDFC----KDTGLQSSAAATRNATIKLLGAL 786 (1974)
Q Consensus 717 ~V~~~l~~~~~~~Kn---PK--v~ae~l~wl~~ai~eFG~~~l~-~K~lI~~~----k~~~L~~sN~~VR~aAi~Ll~~l 786 (1974)
-+++.++..+ +.-+ ++ .....+..|..++..++-...+ ...++..+ ...+=...|+..+.....+++.+
T Consensus 548 ~ll~~L~~ll-~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 626 (960)
T 1wa5_C 548 ILLKNLIALI-LKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (960)
T ss_dssp HHHHHHHHHH-HTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 2334444433 2211 33 3445666677777767644333 23344333 32211346889998899999999
Q ss_pred HhhhCchh-HhhhhcchHHHHHHHHHHHhcCCCCCCCCCc---cccccccCcCCCCCCCCCCCCccccccCCcHHHH--h
Q 000166 787 HKFVGPDI-KGFLADVKPALLSALDAEYEKNPFEGTVVPK---KTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--K 860 (1974)
Q Consensus 787 y~~~G~~l-~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~---R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~--~ 860 (1974)
-+..|+.. ..+.+.+=|.+...++..-... -|..-. .-++.. +.++. ...++-+-++ +
T Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~---~~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~ 690 (960)
T 1wa5_C 627 LNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF---IPYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPN 690 (960)
T ss_dssp HHTSCGGGHHHHHHHHHHHHHHHHHTTCTTT---HHHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGG
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHHhhhHhh---HHHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHH
Confidence 99877653 3444555566555554210000 000000 000000 00110 0111111121 1
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChh-HHhhhhhhhH
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLS 939 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~-~~k~~k~l~~ 939 (1974)
-++...|= -..+..+..++......|-. ...++..+.+.+.+.+ .-..++.+++.++..+|.. |.+|...+++
T Consensus 691 ~~~~~~~~--~~~~~~L~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~ 764 (960)
T 1wa5_C 691 VWELKGNI--PAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAV 764 (960)
T ss_dssp GGCCTTTH--HHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHH
T ss_pred HhcCCCCc--hhHHHHHHHHHHhChHHHHH--HHHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 11112221 23445555555432222222 1345555655554433 2378999999999999999 9999999999
Q ss_pred HHHHHhccCc-hhHHHHHHHHHHHHH
Q 000166 940 DILKCLGDNK-KHMRECTLTVLDAWL 964 (1974)
Q Consensus 940 ~il~~l~D~K-~~vR~aa~~alda~~ 964 (1974)
.++..|...| ..+|.+.+..+...+
T Consensus 765 ~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 765 LLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 9999997765 445544444444443
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.98 E-value=0.00025 Score=82.45 Aligned_cols=229 Identities=15% Similarity=0.073 Sum_probs=128.7
Q ss_pred ccchhhcccc--chhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHH
Q 000166 686 LLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1974)
Q Consensus 686 l~~lveKlgD--~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~ 763 (1974)
++.++.-+.| ..+|..+..+|..+. ..-++..+... ..+.+|.++..++..|. .+|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~-l~d~~~~vR~~A~~aL~----~l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEF-CSDKNYIRRDIGAFILG----QIKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHH-HTCSSHHHHHHHHHHHH----HSCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHH-HcCCCHHHHHHHHHHHH----HhccccccchHHHHHH
Confidence 3445555554 356666666666554 23456666665 46889999988886554 4554333355677777
Q ss_pred hhhcCCCccHHHHHHHHHHHHHHHhhhC-------chhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCC
Q 000166 764 KDTGLQSSAAATRNATIKLLGALHKFVG-------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1974)
Q Consensus 764 k~~~L~~sN~~VR~aAi~Ll~~ly~~~G-------~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1974)
...++.+.|+.||..|+..|+.+....+ +.|...+.|-.+......=.-+.+...
T Consensus 96 ~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------------------ 157 (280)
T 1oyz_A 96 NNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------------------ 157 (280)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------------------
Confidence 6423789999999999999998864321 111122222222111111111111100
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000166 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1974)
Q Consensus 837 ~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al 916 (1974)
...-+.|+.-+.|++|.+|..|+..+..+- ... .+.+..|...+.|.|..+...|+
T Consensus 158 ---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~-~~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 158 ---------------KATIPLLINLLKDPNGDVRNWAAFAININK--------YDN-SDIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp ----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT--------CCC-HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc--------cCc-HHHHHHHHHHhcCCCHHHHHHHH
Confidence 012344666667777777777777765441 111 45566666667777777776666
Q ss_pred HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
..++.+. ....++.++..|.|.. ||.++..+|..+ |-...++.+...|.
T Consensus 214 ~aL~~~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i----~~~~~~~~L~~~l~ 262 (280)
T 1oyz_A 214 IGLSYRK----------DKRVLSVLCDELKKNT--VYDDIIEAAGEL----GDKTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHTT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH----CCGGGHHHHHHHHT
T ss_pred HHHHHhC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc----CchhhhHHHHHHHh
Confidence 6666553 1235566666666643 666666666554 33455666666655
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.83 E-value=0.026 Score=73.78 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=66.6
Q ss_pred hhhhHHHHHHHhc-cCC---HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000166 364 SRFLLPVLLEKLK-EKK---PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1974)
Q Consensus 364 ~~~~l~~lLeklK-EKK---~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1974)
+..-+..|=..|+ +++ ..-++++...+-.+.. | -......-++...+.++++..|.-...++..+++..+ .
T Consensus 33 i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~-G-~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e- 107 (621)
T 2vgl_A 33 INKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL-G-HDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--E- 107 (621)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHH-S-CCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--H-
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc-C-CCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--H-
Confidence 3333444445555 322 1234566665554443 3 3444566777788999999999888888887775432 1
Q ss_pred hHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000166 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 440 ~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1974)
++--++..+.+-++|+++-+|-.|..+|+.+
T Consensus 108 --~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i 138 (621)
T 2vgl_A 108 --LIRLINNAIKNDLASRNPTFMGLALHCIANV 138 (621)
T ss_dssp --HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc
Confidence 1234577888899999999999988888876
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.82 E-value=0.00073 Score=86.09 Aligned_cols=374 Identities=11% Similarity=0.119 Sum_probs=217.5
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh--hccch-----hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~--~~~~~-----~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~ 676 (1974)
++++++|.|.|-..+++|...+.+.+... ++.+. ....||++|. .+.|..++....-+|..++...+.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 67889999999999999999998877542 11111 1234555553 345778888888888888753211
Q ss_pred CCccch-hhhccchhhcccc--chhhhHHHHHHHHHHHhh--chHhH-----HHHHHHhhhhcCC----hhhHHHHHHHH
Q 000166 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV--GPGFI-----FERLYKIMKDHKN----PKVLSEGILWM 742 (1974)
Q Consensus 677 fs~~~~-~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~--~p~~V-----~~~l~~~~~~~Kn----PKv~ae~l~wl 742 (1974)
..+..+ .-.++.++.-+.+ ..++..+..+|..++.-. .-..| +..++..+..... ..++..++..+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 111111 1245666665554 578888888888887421 12222 2234444322111 12222222222
Q ss_pred HHHHHHhccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCC
Q 000166 743 VSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (1974)
Q Consensus 743 ~~ai~eFG~~---~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~ 819 (1974)
+... ..... ...+..++..+..+ |.+.++.|+..|...|..+-. ++ +.....+ ..
T Consensus 215 ~nl~-~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~--~~----------~~~~~~i----~~---- 272 (510)
T 3ul1_B 215 SNLC-RNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTD--GP----------NERIEMV----VK---- 272 (510)
T ss_dssp HHHH-CCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTS--SC----------HHHHHHH----HT----
T ss_pred HHHh-hcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhh--ch----------hhhHHHH----Hh----
Confidence 2222 21111 12346788888888 999999999999887755432 11 1111100 00
Q ss_pred CCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHH
Q 000166 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFG 898 (1974)
Q Consensus 820 ~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~ 898 (1974)
..+-+.|+.-+.+.++.+|..++..+..|+... ...+... -...+.
T Consensus 273 --------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 273 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALA 319 (510)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGG
T ss_pred --------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchH
Confidence 012345777788999999999999999887421 1100000 012455
Q ss_pred HHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh-hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch-------
Q 000166 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD------- 970 (1974)
Q Consensus 899 aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k-~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~------- 970 (1974)
.|..-|.+.+..+...|+.+++.|+.+-...... .-..++|.++..|.+....+|..|..||..+......+
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 6677778899999999999999997543221211 13468899999999999999999999987766543222
Q ss_pred -hhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC---CCCcchhhh------hhhHhhhccCCChHHHHHHHHHHHHH
Q 000166 971 -KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 971 -~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~---~~~~~~~~~------~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.+++.+...|.++ ++..+..++.-|..-|... .....+..+ +.-+-....+.|.+|++.|..+|..+
T Consensus 400 ~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 400 CGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2344555556543 4666666666555433221 111111111 11223334677888888887776443
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.79 E-value=0.019 Score=72.30 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=119.4
Q ss_pred HHHhhcC-CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-h
Q 000166 857 TLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-S 934 (1974)
Q Consensus 857 ~l~~~l~-d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~ 934 (1974)
.++.-+. +.+|.+|..|+..+..+......+-.-.. ...+..|-..|.+.+..++..|+.++..++..-...-... .
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 141 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3555553 34899999999999887532111100000 2356677788888899999999999999998754332222 2
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-------cchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC
Q 000166 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1974)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-------gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~ 1007 (1974)
...+|.++..|.+....+|..+..+|..|.... .-...++.+...|.+. +++.+.+....+...+...+..
T Consensus 142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~~~~~ 219 (529)
T 1jdh_A 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSSN 219 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSTTH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC--ChHHHHHHHHHHHHHHhcCccc
Confidence 468999999999999999999999998776421 1113355666667654 3444554444444455543321
Q ss_pred cc-h--hhhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1008 PD-A--AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1008 ~~-~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
.. . ...+.+++..|.+.+.++|..+-.+|..+...
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 11 1 23466688889999999999988877766543
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.77 E-value=0.002 Score=82.45 Aligned_cols=375 Identities=11% Similarity=0.139 Sum_probs=220.9
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh--hccc-----hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000166 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1974)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~E~l~~~v~~~--~~~~-----~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~ 676 (1974)
++++.++.+.|-..+++|+..+.+.+... ++.+ .....||++|. .+.|..++.....+|..++...+.
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 57789999999999999999998776441 1111 11234566653 356788888888888888753211
Q ss_pred CCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHh--hchHhHH-----HHHHHhhhhcCChhhHHHHHHHHHHHH
Q 000166 677 FPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEA--VGPGFIF-----ERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1974)
Q Consensus 677 fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~--~~p~~V~-----~~l~~~~~~~KnPKv~ae~l~wl~~ai 746 (1974)
..+..+ .-+++.++.-+. +..++..|..+|..++.. ..-..|+ ..++..+............+...+.++
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 124555655444 356788888888888742 1122232 234444322222222222222222233
Q ss_pred HHh---ccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC
Q 000166 747 EDF---GVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1974)
Q Consensus 747 ~eF---G~~---~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~ 820 (1974)
..+ ... ...+..++..+-.+ |.+.++.|+..|...|..+-. ++ +.....+- .
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~--~~----------~~~~~~v~----~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTD--GP----------NERIEMVV----K----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHS--SC----------HHHHHHHH----T-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhh--hh----------hhhHHHHH----h-----
Confidence 222 111 12346788888888 999999999999877754432 11 11100000 0
Q ss_pred CCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHHH
Q 000166 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (1974)
Q Consensus 821 ~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~a 899 (1974)
..+-+.|+.-+.+.++.++..++..|..|+... ...+... -...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 002345777788999999999999999887421 1100000 0224567
Q ss_pred HhhhccchhHhHHHHHHHHHHHHHHhcChhHHh-hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch--------
Q 000166 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 970 (1974)
Q Consensus 900 Lk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k-~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~-------- 970 (1974)
|..-|.+.+..+...|+.+++.|+.+-...... .-..++|.++..|.+....+|..|..||..+......+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 777788889999999999999998643222221 13468999999999999999999999887766543322
Q ss_pred hhhHHHHHHHhcccCCcchHHHHHHHHHHHhcc---CCCCcchhhh------hhhHhhhccCCChHHHHHHHHHHHHH
Q 000166 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 971 ~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~---~~~~~~~~~~------~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.+++.+...|.++ ++..+.-+|.-|..-|.. ......+..+ +.-+-....+.|.+|++.|..+|..+
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2344556666643 566777776666544421 1111111111 12233345678889999888877654
No 51
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.76 E-value=0.00039 Score=80.83 Aligned_cols=162 Identities=15% Similarity=0.053 Sum_probs=121.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk-~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~ 367 (1974)
.+...+.+..|..|..|+..|..+... +.....++..|.. .+.|.|..|...|+.+++.++.+.. .+...+
T Consensus 58 ~L~~~l~d~~~~vR~~A~~aL~~l~~~----~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~ 129 (280)
T 1oyz_A 58 LAIEFCSDKNYIRRDIGAFILGQIKIC----KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKI 129 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHSCCC----TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHH
Confidence 466677888999999999888766432 2235567777775 4569999999999999999876542 345678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhH
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1974)
++.++..++|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++.-|.+. .... ...+
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~~--------~~~~ 194 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVIND------KATIPLLINLLKDPNGDVRNWAAFAININ-KYDN--------SDIR 194 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHHHH-TCCC--------HHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh-ccCc--------HHHH
Confidence 8999999999999999877777654432 34677888889999999998888777653 2111 3457
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+.+...++|.++.||..|..+|+.+-
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 88889999999999999999988753
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.72 E-value=0.0044 Score=81.07 Aligned_cols=397 Identities=14% Similarity=0.094 Sum_probs=209.1
Q ss_pred hhcCCCccccc--CCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhh
Q 000166 10 EAKKLPWEDRL--LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (1974)
Q Consensus 10 ~~~~Lpl~erL--~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~ 87 (1974)
+.---++..-| .|.++-.|..|.-.+.+.|+...+-- ....+.+.+.+.+.|+|..++..++-++..+.......+
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~--~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV--PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC--CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc--CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH
Confidence 44556777788 99999999999999999997421110 001356667788999999999999998887766542211
Q ss_pred hhhhhHHHHHHHhhhhcC--------------ChhhHHHHHHHHHHHHhhchhh---h---HHHHHHH---------Hhh
Q 000166 88 GRYAKEVCDAIAAKCLTG--------------RPKTVEKAQAVFMLWVELEAVD---V---FLDVMEK---------AIK 138 (1974)
Q Consensus 88 ~~~~~~v~~~lveK~L~~--------------r~ktk~~a~e~~l~~vE~e~~~---~---v~e~ll~---------~~~ 138 (1974)
.......+. +..+.+.. .+=.+-+.++++..|...++++ . +++.++. .+.
T Consensus 223 ~~~~~~~~~-~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 223 KTSVSLAVS-RLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp TTHHHHHHH-HHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHH-HHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 111111111 11122211 1223333444444444322221 2 2222332 234
Q ss_pred ccCc--hhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000166 139 NKVA--KAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1974)
Q Consensus 139 ~K~P--Kvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q 216 (1974)
|+|+ =|+-+|+.++..+ +..---.+..+..|-+++.++|+++|=-|..-+..+-.--+ + . ..+ ....+.
T Consensus 302 ~~n~~~aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~-~-~-~~~-~~~~~~- 372 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHH----DSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF-S-H-EAV-KTHIET- 372 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT-T-H-HHH-HTTHHH-
T ss_pred ccchHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC-c-H-HHH-HHHHHH-
Confidence 5565 7777887777553 32100134466777788888999999887766665542211 1 0 111 111111
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcc---cccCCCCchhhhhh
Q 000166 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV---DILTPLEKSGFWEG 293 (1974)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pv---dIl~klpk~~f~~~ 293 (1974)
-|.-+... +-+.+|...-. . -|.++++. .|+. .+.+-
T Consensus 373 ------i~~~L~~d--~d~~Ir~~aL~-l--------------------------L~~l~~~~Nv~~Iv~-----eL~~y 412 (621)
T 2vgl_A 373 ------VINALKTE--RDVSVRQRAVD-L--------------------------LYAMCDRSNAQQIVA-----EMLSY 412 (621)
T ss_dssp ------HHHHHTTC--CCHHHHHHHHH-H--------------------------HHHHCCHHHHHHHHH-----HHHHH
T ss_pred ------HHHHhccC--CCHhHHHHHHH-H--------------------------HHHHcChhhHHHHHH-----HHHHH
Confidence 11111101 11233322110 0 01111111 2222 33344
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLe 373 (1974)
+.+..-.-|.+++..+..++. |+ +.++.-.+..|-+++.+.+-.++...+..+-.+... .+.+..| .+..+++
T Consensus 413 l~~~d~~~~~~~v~~I~~la~--k~-~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~-~~~~~~~---~~~~l~~ 485 (621)
T 2vgl_A 413 LETADYSIREEIVLKVAILAE--KY-AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN-RDDVQGY---AAKTVFE 485 (621)
T ss_dssp HHHCCHHHHHHHHHHHHHHHH--HH-CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG-GCSCHHH---HHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHH--hc-CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC-ChhHHHH---HHHHHHH
Confidence 444555667777777666542 11 245677777777777755555666665555555432 1334444 2445566
Q ss_pred HhccCCHHHHHHH-HHHHHHHHHhcC-------CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh
Q 000166 374 KLKEKKPTVAESL-TQTLQAMHKAGC-------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1974)
Q Consensus 374 klKEKK~~V~eA~-~~aLda~~~~~~-------~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1974)
-+.|-.. .+++ ..|+=-+.+|+. .+..++++.+...+..-++.+|..++.-+.+.+...+. . ...
T Consensus 486 ~l~~~~~--~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~---~~~ 558 (621)
T 2vgl_A 486 ALQAPAC--HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--V---KAT 558 (621)
T ss_dssp HHTSSSC--CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--G---HHH
T ss_pred HHcCccc--hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--H---HHH
Confidence 6665432 1122 223333344411 11235566676677788899999999999888765432 1 122
Q ss_pred hHHHHHhhhC--CCCHHHHHHHHHHHHHH
Q 000166 446 YVPICMECLN--DGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 446 ~~~~l~k~l~--Ds~~~VR~aA~~~l~~l 472 (1974)
+...+-.+.+ |.+.|||+-|.+.+.-+
T Consensus 559 i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 559 IQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3334444555 99999999999765543
No 53
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.71 E-value=0.00019 Score=79.43 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=134.8
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc-CCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-chh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~-pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~~ 365 (1974)
-+..-+.+..|..|.+|+..|..+... +..... --...+..|-..+.+.|..+...|+.+++.|+.+-...-.. ...
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 467778999999999999999998742 211000 00135778888899889999999999999998543211111 124
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1974)
..+|.++.-+++..+.|+..+..+|-.+... ... . ..+++.+...+++.++.++..++..|.......+. ..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~ 173 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QK 173 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HH
Confidence 5899999999999999999999998888642 100 1 13567788899999999999999888877764322 11
Q ss_pred hHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 440 ~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
..+. ...++.++.++.+.+++||+.|..+|..|.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 1222 347899999999999999999999998763
No 54
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.66 E-value=0.021 Score=76.37 Aligned_cols=636 Identities=13% Similarity=0.094 Sum_probs=357.2
Q ss_pred HHHHHHHHHHHhhh----cCCCCCCChhHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhccccccchh-hhHHHHHHH
Q 000166 301 ERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLLEK 374 (1974)
Q Consensus 301 eRkEALe~L~~L~~----~pKi~~~dy~dL~~~Lkk~l~D-sNv~vv~~A~~~i~~LA~gLr~~F~~y~~-~~l~~lLek 374 (1974)
.|.-|+..|..|.. .-+|...+ -+..|.+++.. .|--++..|++++..|++|=+..-..-.+ .=.|-++.-
T Consensus 24 ~~~~a~~nl~vl~re~aga~~i~~~~---~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 100 (810)
T 3now_A 24 KRRAAANNLVVLAKEQTGAELLYKDH---CIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRV 100 (810)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHhhceeeeccccchHHHHhCc---hHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHH
Confidence 34458888777764 23443322 25566677765 78999999999999999986543222211 224556666
Q ss_pred hccCCHHHHHHHHHHHHHHHHhc--CC-----------------ChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHHhh
Q 000166 375 LKEKKPTVAESLTQTLQAMHKAG--CL-----------------NLVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIET 433 (1974)
Q Consensus 375 lKEKK~~V~eA~~~aLda~~~~~--~~-----------------~l~~~~e~i~~al~~Kn--P~vk~etl~~L~r~l~~ 433 (1974)
+.-+...++.|+.-++..++... .. .++.++..+...+.+++ ...|-.+++.|.|.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (810)
T 3now_A 101 LDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHY 180 (810)
T ss_dssp HHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCc
Confidence 66677778888888888887751 11 13344555666777766 79999999999999965
Q ss_pred CChhHHh--H---hhhhhHHHHHhhhCCC--------CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000166 434 SSKAAVL--K---VHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1974)
Q Consensus 434 ~~~~~~~--~---~~k~~~~~l~k~l~Ds--------~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1974)
....... . =++.++... ..+.+. .++.|-.+.-|+..++.-++.+.- .+.-.+.+.+++
T Consensus 181 ~~~~~~~~~~~~~g~~~~l~v~-~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~ 252 (810)
T 3now_A 181 TALEWAERLVEIRGLCRLLDVC-SELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEA-------KARFTDQIDEYI 252 (810)
T ss_dssp TTTTHHHHHHHTTHHHHHHHHH-TCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHHH
T ss_pred cccccccchhhHhhHHHHHHHH-hcCccccccccCCCChhHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHHHH
Confidence 4211110 0 112222221 223333 678999999999999988884321 011122333333
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 000166 501 AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEA 580 (1974)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~ 580 (1974)
..-- . +.... . .-.+.+....-- +
T Consensus 253 ~~~~------------~--------~~~~~-~--~~~a~~alt~i~---------------~------------------ 276 (810)
T 3now_A 253 KDKL------------L--------APDME-S--KVRVTVAITALL---------------N------------------ 276 (810)
T ss_dssp HHHH------------S--------SCCHH-H--HHHHHHHHHHHH---------------S------------------
T ss_pred HHHh------------c--------cCChH-h--HHHHHHHHHHHh---------------c------------------
Confidence 2100 0 00000 0 000000000000 0
Q ss_pred CCCCCCCCCCHHHHHHHH-hccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHhcCCCccc
Q 000166 581 PEDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEK 655 (1974)
Q Consensus 581 ~~~~~~~~~s~Ee~e~~~-~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~----~~~~~Lvr~l~~~Pgwkes 655 (1974)
..+|..-... .+=+=+.++..+.|.+=..+.+|++.+...-.....-+ ...+.|+.+ ++++
T Consensus 277 --------g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~L------l~s~ 342 (810)
T 3now_A 277 --------GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRL------YHSK 342 (810)
T ss_dssp --------SSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHH------TTCS
T ss_pred --------CCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHH------HcCC
Confidence 0111111111 11111566788888888888899998876543321111 112333333 3445
Q ss_pred hHHHHHHHHHHHHHHHHhc------CCCCccchhhhccchhhccc----cchhhhHHHHHHHHHHHhh--chHh-----H
Q 000166 656 NVQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVA----DIKTRAHAMKCLTTFSEAV--GPGF-----I 718 (1974)
Q Consensus 656 NfqV~~k~leil~~la~~~------~~fs~~~~~~~l~~lveKlg----D~K~r~~a~e~L~~~aE~~--~p~~-----V 718 (1974)
|-.+....+-.|..++... ..|....+..+++.++.-+. |.-.+..+.++|.-++... .-++ +
T Consensus 343 ~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~ 422 (810)
T 3now_A 343 NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKAS 422 (810)
T ss_dssp CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccch
Confidence 5555556666777776321 12333333333444444433 4457788888887776421 2222 2
Q ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHHHhc---------------cCccc----------h----H-----hHHHHHh
Q 000166 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFG---------------VSHLK----------L----K-----DLIDFCK 764 (1974)
Q Consensus 719 ~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG---------------~~~l~----------~----K-----~lI~~~k 764 (1974)
+..+++.+ ++.++.++-+++.-++.+....- -..++ + + ..|..+.
T Consensus 423 Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 423 IHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 33455554 56789999999988888876321 00000 1 1 3455667
Q ss_pred hhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccCc--C--CCC
Q 000166 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST--S--SVS 838 (1974)
Q Consensus 765 ~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~--~--~~~ 838 (1974)
.+ |.+.++.||..|...|+-+-. -+..+..+ .+.=|.|+..|...-.+ . +..... . ..+
T Consensus 502 ~L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~Vv~~Gaip~Lv~LL~s~~~~---------~---k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 502 AL-AKTESHNSQELIARVLNAVCG--LKELRGKVVQEGGVKALLRMALEGTEK---------G---KRHATQALARIGIT 566 (810)
T ss_dssp HH-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHHHHSSCHH---------H---HHHHHHHHHHHHHH
T ss_pred HH-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHccCCHH---------H---HHHHHHHHHHHhcC
Confidence 77 899999999999999998853 23466655 45556777776421100 0 000000 0 000
Q ss_pred CCCCCCCCccccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHHHc---ccCCCCCCccchHHHHhhhccchhHhHHHH
Q 000166 839 SGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEA---NKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914 (1974)
Q Consensus 839 ~~~~d~lpRvDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~~a---nkrI~p~~~geL~~aLk~Rl~DsNk~lv~~ 914 (1974)
+...-.++...+.+-| +-|+.-+... +=..+.+|+.+|..|.... ..+|--.+ -+..|-.-|.+.|..+...
T Consensus 567 ~~p~~~~~~~~~~~aI-ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG---~l~~Lv~LL~s~~~~Vq~~ 642 (810)
T 3now_A 567 INPEVSFSGQRSLDVI-RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ---GVSKIEYYLMEDHLYLTRA 642 (810)
T ss_dssp SCHHHHTTTHHHHHTH-HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHHHHHHSCCTTHHHH
T ss_pred CChhhhhcchhhhcHH-HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHHHHHcCCCHHHHHH
Confidence 0000001111112223 3355555533 2234568999888887421 11222222 2566667777889999999
Q ss_pred HHHHHHHHHHhcChhHH-hhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc--c----c--hhhhHHHHHHHhcc
Q 000166 915 TLITLGAVASAMGPAVE-KSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--H----L--DKMVPYVTTALTDA 983 (1974)
Q Consensus 915 al~ii~~lA~amG~~~~-k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~--g----l--~~~~~~i~~~L~~~ 983 (1974)
|+.+|+.|+. ++... ++. ...++.++..++..+..+|.+|..||-...... . + ..+++.+...|.++
T Consensus 643 A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 643 AAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp HHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 9999999987 44443 333 357889999999999999999988888776521 1 1 34666777777754
Q ss_pred cCCcchHHHHHHHHHHHhccCCC-C-c--chhhhhhhHhhhccC---CChHHHHHHHHHHHHHHHh
Q 000166 984 KLGAEGRKDLFDWLSKQLTGLSG-F-P--DAAHLLKPASIAMTD---KSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 984 ~~~p~~R~e~l~wL~~~l~~~~~-~-~--~~~~~~~p~~~~L~D---r~~dVRkaA~~~L~~~m~~ 1042 (1974)
++..|.+.+.-|. .+..... . . ...-.+.|++.+|.+ ++.+|+..|.++|..++.+
T Consensus 721 --d~~vq~~A~~aL~-NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 721 --SPAVQHRGIVIIL-NMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp --SHHHHHHHHHHHH-HHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHH-HHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 5667766664444 4443221 0 0 112346678888743 6899999999999887753
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.65 E-value=0.0016 Score=88.17 Aligned_cols=271 Identities=11% Similarity=0.204 Sum_probs=192.2
Q ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHH-HhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc--hhH
Q 000166 719 FERLYKIMKDHKNPKVLSEGILWMVSAVE-DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP--DIK 795 (1974)
Q Consensus 719 ~~~l~~~~~~~KnPKv~ae~l~wl~~ai~-eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~--~l~ 795 (1974)
++.+++.+.-.+ +--+.++..-++..+. +-+...+. -.+++.+++. +.+-+.+ .+|..+++.|....|. .+.
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKG-IKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHH-HTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHH-HhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 333444444333 2223344455555555 33444455 3678888887 8887777 8888888888765543 333
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHH
Q 000166 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1974)
Q Consensus 796 ~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe 875 (1974)
+||= + +-+.+++.++||+=.+|..|-.
T Consensus 91 ~~~~----------------------------------------------------~-~~~~~~~~~~dk~~~v~~aa~~ 117 (986)
T 2iw3_A 91 PYIV----------------------------------------------------Q-LVPAICTNAGNKDKEIQSVASE 117 (986)
T ss_dssp HHHH----------------------------------------------------T-THHHHHHHTTCSSHHHHHHHHH
T ss_pred cchH----------------------------------------------------H-HHHHHHHHhcCCchHHHHHHHH
Confidence 3331 1 2345778889999999999999
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhccchhH-hHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHH
Q 000166 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRE 954 (1974)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk-~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~ 954 (1974)
++..|+.. +.|.-+--++++|-.-|..++| ....-||++++.++.....-+..+..-++|-+-++.-|-|+-|..
T Consensus 118 ~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~ 193 (986)
T 2iw3_A 118 TLISIVNA----VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA 193 (986)
T ss_dssp HHHHHHHH----SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHh----CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHH
Confidence 99999953 4454445677788888877765 678889999999998776667788889999999999999999999
Q ss_pred HHHHHHHHHHHhcc---chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC----cchhhhhhhHhh-hccCCCh
Q 000166 955 CTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASI-AMTDKSS 1026 (1974)
Q Consensus 955 aa~~alda~~~~~g---l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~----~~~~~~~~p~~~-~L~Dr~~ 1026 (1974)
+|..||.+.+..++ ++.++|.+.+++.+|.. =.|.. ..|....-. .....++.|++. +|.+|..
T Consensus 194 ~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~----~~~~~----~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~ 265 (986)
T 2iw3_A 194 AATAAMTKATETVDNKDIERFIPSLIQCIADPTE----VPETV----HLLGATTFVAEVTPATLSIMVPLLSRGLNERET 265 (986)
T ss_dssp HHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH----HHHHH----HHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh----hHHHH----HHhhcCeeEeeecchhHHHHHHHHHhhhccCcc
Confidence 99999999999886 56778888999986642 22332 233333221 234667888555 7999999
Q ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHhhccCchh
Q 000166 1027 DVRKAAEACIVEILRAG-GQETIEKNLKDIQGPA 1059 (1974)
Q Consensus 1027 dVRkaA~~~L~~~m~~~-G~~~~~~~~~~Lk~~~ 1059 (1974)
.+...+.-++.-+.+.| ....+..++.+|.|..
T Consensus 266 ~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~ 299 (986)
T 2iw3_A 266 GIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGL 299 (986)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHH
T ss_pred hhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHH
Confidence 99988888888888877 4556677777775544
No 56
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.62 E-value=0.00041 Score=78.87 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=134.9
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhc-C-CCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-ch
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLAST-K-RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SS 364 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~-p-Ki~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~ 364 (1974)
+.|.+.|.+.....|.+|+..|..+++. + ....---...+..|-+.+.+.+..+...|+.+|+.|+.+-...-.. ..
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4689999999999999999999765432 1 0000000135778888999888999999999999999753211111 12
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000166 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1974)
Q Consensus 365 ~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1974)
...+|.++.-+++..+.|++.+..+|-.+... .... ..++.+...|.+.++.++..++.-|....... ..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 35899999999999999999999998887643 1111 35677888999999999998888777665432 22
Q ss_pred HHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
....+. ..++|.++..+.+++++||..|+.+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 221222 458999999999999999999999999886
No 57
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.60 E-value=0.015 Score=75.96 Aligned_cols=383 Identities=13% Similarity=0.032 Sum_probs=203.6
Q ss_pred cccccCCCChhHHHHHHHHHHHHhhhcCCCCChhhh--hhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhh-hh
Q 000166 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-AK 92 (1974)
Q Consensus 16 l~erL~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~--~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~~~~~~~-~~ 92 (1974)
|-+-|.+.+...|..|..-|....... ++.-..+. ...+.+-+.+.+.|...+..++.+|..+....+...... ..
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~ 181 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 345677888999999999999887542 11111111 122344467788899888888888866553221110111 12
Q ss_pred HHHHHHHhhhhcC-ChhhHHHHHHHHHHHHhhch-h-----hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC
Q 000166 93 EVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEA-V-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1974)
Q Consensus 93 ~v~~~lveK~L~~-r~ktk~~a~e~~l~~vE~e~-~-----~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~kvv~ 165 (1974)
+.++.++.-.-++ ....+..+..++..+..... . ..++..|...+.+.++.++..++.+|..+... +.....
T Consensus 182 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~ 260 (644)
T 2z6h_A 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQEG 260 (644)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG-CTTCCS
T ss_pred CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-chhhhh
Confidence 3455555432222 23333444444333332111 1 24677788888888999999999888887544 333445
Q ss_pred hhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhh-hchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHH
Q 000166 166 PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFE-KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKE 244 (1974)
Q Consensus 166 ~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~L~~-~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~ 244 (1974)
.+.++..|-.++.+.|..||..+...+..|... ....+..+.+ +.=+..++-|...
T Consensus 261 ~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~--~~~~~~~v~~~g~v~~Lv~lL~~~--------------------- 317 (644)
T 2z6h_A 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRA--------------------- 317 (644)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHH---------------------
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHHcc---------------------
Confidence 678889999999999999999998888877542 1111121211 0111111111100
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhc-CC---CCC
Q 000166 245 LGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KR---IAP 320 (1974)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~-pK---i~~ 320 (1974)
+.+|..|..++..|..|... +- ...
T Consensus 318 ---------------------------------------------------~~~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 318 ---------------------------------------------------GDREDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp ---------------------------------------------------TTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ---------------------------------------------------CCcHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 00122222222222222210 00 000
Q ss_pred -CChhHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccC--------------------
Q 000166 321 -GDFTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-------------------- 378 (1974)
Q Consensus 321 -~dy~dL~~~Lkk~l~Ds-Nv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEK-------------------- 378 (1974)
---...+..|.++|.+. +..++..|+.+|+.|+.+-.....=.-..++|.+++-+++.
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred HHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 00001223333333322 23444444444444443211100000123444444444432
Q ss_pred --CHHHHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh--hhhHHHH
Q 000166 379 --KPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPIC 450 (1974)
Q Consensus 379 --K~~V~eA~~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~--k~~~~~l 450 (1974)
-..|++++..||-.++... .+.-..+++.+...|.+.++.++..+...|..+... +. ....+ ...++.+
T Consensus 427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~-~~~~i~~~g~l~~L 503 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPL 503 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HH-HHHHHHHcCChhHH
Confidence 2356667777776554310 000113567788899999999999888888876542 11 11111 2367899
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 451 MECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
..++.+.+++||.+|..+|+.+...-+
T Consensus 504 ~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 504 TELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999998765554
No 58
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.55 E-value=0.031 Score=71.30 Aligned_cols=373 Identities=14% Similarity=0.155 Sum_probs=219.4
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCC---hhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhcccccc-c
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSG-S 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~d---y~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~-y 363 (1974)
++.+.+.|..=..+.+|+..+.++++..+-.+-+ =..++..|-..|. +.|..+...|+.||..||.+-...-.. .
T Consensus 80 ~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv 159 (529)
T 3tpo_A 80 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV 159 (529)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6888999999999999999999987643322210 0125667777886 778899999999999999763322111 1
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh------hHHHHHHHhhcCCc-hhHHHHHHHHHHHHh---h
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIE---T 433 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~------~~e~i~~al~~KnP-~vk~etl~~L~r~l~---~ 433 (1974)
-...+|.++.-++.....|++.+..||-.++.. +....+ .++.+...+..... ......+...+.++. .
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 235789999999999999999999999888753 111111 23556666654442 222222222333332 2
Q ss_pred CC-hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000166 434 SS-KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1974)
Q Consensus 434 ~~-~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1974)
.. ..........++|.+++++.+.+++|+..|+.+|..+...- +.. +...+.. +
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~-------------~~~---~~~v~~~-g-------- 293 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-------------NER---IEMVVKK-G-------- 293 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-------------HHH---HHHHHTT-T--------
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh-------------hhh---HHHHHhc-c--------
Confidence 11 11111234678999999999999999999998887655311 111 1111110 0
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHH
Q 000166 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 592 (1974)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~E 592 (1974)
T Consensus 294 -------------------------------------------------------------------------------- 293 (529)
T 3tpo_A 294 -------------------------------------------------------------------------------- 293 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 000166 593 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666 (1974)
Q Consensus 593 e~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~------~~~~~~Lvr~l~~~PgwkesNfqV~~k~lei 666 (1974)
+-+-++..|.+.++..+..++..+...+...+.. ......|+.+| .+.+-.|.....-+
T Consensus 294 ---------~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 294 ---------VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATWT 358 (529)
T ss_dssp ---------CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHHH
T ss_pred ---------chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHHH
Confidence 0011233444455555555555444332211100 01233455544 34456677777777
Q ss_pred HHHHHHhcCCCCccc-hhhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHhH--------HHHHHHhhhhcCChhhH
Q 000166 667 INYLAATATKFPKKC-VVLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGFI--------FERLYKIMKDHKNPKVL 735 (1974)
Q Consensus 667 l~~la~~~~~fs~~~-~~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~p~~V--------~~~l~~~~~~~KnPKv~ 735 (1974)
|..++.......... -.-+++.++.-+ ++.+++..|.-+|..++....++.+ +..++.. ...++++++
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~L-L~~~d~~i~ 437 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL-LSAKDTKII 437 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG-GGCSCHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHH-hcCCCHHHH
Confidence 777664211100000 012444444433 4567888888888888876555432 2334444 478999999
Q ss_pred HHHHHHHHHHHHHhccCccc---hHh------HHHHHhhhcCCCccHHHHHHHHHHHHH
Q 000166 736 SEGILWMVSAVEDFGVSHLK---LKD------LIDFCKDTGLQSSAAATRNATIKLLGA 785 (1974)
Q Consensus 736 ae~l~wl~~ai~eFG~~~l~---~K~------lI~~~k~~~L~~sN~~VR~aAi~Ll~~ 785 (1974)
.-+|..|..+++-.. ..-. +.. .++.+..+ ..|.|..|+..|..++-.
T Consensus 438 ~~~L~aL~nil~~~~-~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 438 QVILDAISNIFQAAE-KLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHHHHHHHHH-TTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH-hccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 999888888775321 1111 111 24456666 789999999999888643
No 59
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.49 E-value=0.00095 Score=75.25 Aligned_cols=182 Identities=19% Similarity=0.158 Sum_probs=135.8
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCC-CCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH---hccccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKR-IAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSGS 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pK-i~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~g---Lr~~F~~y 363 (1974)
.+...+.+..+..|.+|+..|..++.... .... --...+..|.+.+.+.|..+...|+.+++.|+.. .+..+.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 83 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 83 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--
Confidence 47778888889999999999998875432 0000 0013678888899988999999999999999864 222221
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1974)
....++.++.-+++..+.|++.+..+|-.+... .... ...++.+...+.+.+|.++..++..|....... ..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~ 161 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DE 161 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HH
Confidence 235799999999999999999999999888642 1010 135677888999999999999888888665432 22
Q ss_pred HHhHh-hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000166 438 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 438 ~~~~~-~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
....+ -..++|.++.++.+.+++||..|..+|+.+..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 21111 14589999999999999999999999998874
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.47 E-value=0.011 Score=79.12 Aligned_cols=418 Identities=14% Similarity=0.104 Sum_probs=248.1
Q ss_pred cccCCCChhHHHHHHHHHHHHhhhcCCCCChhhhhhhhhhhhhcCCCCHHHHHHHHHHHHHHHHHcC--h---hhhhh-h
Q 000166 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAAD--A---DAGRY-A 91 (1974)
Q Consensus 18 erL~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqEk~leal~~~l~~a~--~---~~~~~-~ 91 (1974)
.-+.|.+=-.+..|++.+...... .+..+.......+++.+++...|...|+.++-+|+.+-...+ . .+... .
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 345566667778888888875421 000111111224677788999999999987777765532211 1 11111 1
Q ss_pred hHHHHHHHhhhhc-C--ChhhHHHHHHHHHHHHhhchh-------hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhC-
Q 000166 92 KEVCDAIAAKCLT-G--RPKTVEKAQAVFMLWVELEAV-------DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG- 160 (1974)
Q Consensus 92 ~~v~~~lveK~L~-~--r~ktk~~a~e~~l~~vE~e~~-------~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG- 160 (1974)
..+++.+ -+.|. . .+..++.|.+++.-+..-... ..++..|+..+++.++.++-+|+.+|.++...+=
T Consensus 376 ~~Lv~~l-~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 376 LKLAEAC-RRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHH-HHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 2233333 34443 3 567888888886655433211 2567778888889999999999999999987431
Q ss_pred --------------CCccC----------h----hH-----HHhhchhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHH
Q 000166 161 --------------AKIIP----------P----KR-----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTI 207 (1974)
Q Consensus 161 --------------~kvv~----------~----K~-----ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~~~lk~~ 207 (1974)
-..++ + +. .+..|..++.+.++.||.++...+..|- |..-.+..
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~~ 531 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC---GLKELRGK 531 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHHH
Confidence 11111 0 12 4567778889999999999999988885 32223333
Q ss_pred Hhh-hchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCC
Q 000166 208 LFE-KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 286 (1974)
Q Consensus 208 L~~-~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~iDp~dl~~pvdIl~klp 286 (1974)
+.+ +.=|..+.-|. .+. + ..|......... .... . ||.-.+....+..-+|
T Consensus 532 Vv~~Gaip~Lv~LL~------s~~--~--~~k~~Aa~AL~n--L~~~--~--------------~p~~~~~~~~~~~aIp 583 (810)
T 3now_A 532 VVQEGGVKALLRMAL------EGT--E--KGKRHATQALAR--IGIT--I--------------NPEVSFSGQRSLDVIR 583 (810)
T ss_dssp HHHTTHHHHHHHHHH------SSC--H--HHHHHHHHHHHH--HHHH--S--------------CHHHHTTTHHHHHTHH
T ss_pred HHHCCCHHHHHHHHc------cCC--H--HHHHHHHHHHHH--HhcC--C--------------ChhhhhcchhhhcHHH
Confidence 321 11122222331 111 1 111111100000 0000 0 0000000000111122
Q ss_pred chhhhhhhccC-ChHHHHHHHHHHHHhhhcC-C----CCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh--cc
Q 000166 287 KSGFWEGVKAT-KWSERKDAVAELTKLASTK-R----IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RT 358 (1974)
Q Consensus 287 k~~f~~~l~s~-KWkeRkEALe~L~~L~~~p-K----i~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gL--r~ 358 (1974)
-+.+-+.+. .=..+.+|+..|..|+..+ . +... ..+..|-.++.+.|..|...|+.||+.|+.+- +.
T Consensus 584 --pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a---G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 584 --PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE---QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp --HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred --HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 244444432 2234568999999887653 1 1111 13566777788889999999999999999753 22
Q ss_pred ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc---CCCh---hhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLNL---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 359 ~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~---~~~l---~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
.|. .....++.++.-+...+..|+.++..||-.+.... +-.+ ..+++.+...+.+.++.+|.+.+.-|.....
T Consensus 659 ~~v-~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFE-GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHH-SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHH-hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 232 11368899999999999999999999999887620 1011 2366788889999999999998888877765
Q ss_pred hCChhHHhHhh-hhhHHHHHhhhCCC---CHHHHHHHHHHHHHHHHH
Q 000166 433 TSSKAAVLKVH-KDYVPICMECLNDG---TPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 433 ~~~~~~~~~~~-k~~~~~l~k~l~Ds---~~~VR~aA~~~l~~lmk~ 475 (1974)
. +......+. ..++++++.++.++ +.+|++.|.++|..+++.
T Consensus 738 ~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 738 A-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp T-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 3 332222222 34899999999655 899999999999888753
No 61
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.40 E-value=0.0065 Score=66.15 Aligned_cols=208 Identities=19% Similarity=0.305 Sum_probs=155.4
Q ss_pred ccCCCCchhhhh----hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHH
Q 000166 281 ILTPLEKSGFWE----GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARG 355 (1974)
Q Consensus 281 Il~klpk~~f~~----~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~g 355 (1974)
|..++.+ .|.+ -+.+.-|..||.||.-+-.+... .+.-|..+++-|-..+. |--|.+.+.-++.+|.+|+-
T Consensus 25 ~~a~~d~-~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i 100 (253)
T 2db0_A 25 IMAKYDE-SVLKKLIELLDDDLWTVVKNAISIIMVIAKT---REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE 100 (253)
T ss_dssp HHHHHCH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhH-HHHHHHHHHhccHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh
Confidence 3344442 4544 45788999999999998887642 23347778887777777 88888888888888888864
Q ss_pred hccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000166 356 LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1974)
Q Consensus 356 Lr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1974)
++ .-++.++|.+++-+.=--+.++=-+.-+|..++..+...+..+.+||..-+.+||-.=|...++|+.-.=.++.
T Consensus 101 -~P---e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 101 -KP---ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp -CH---HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred -CH---HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 21 23788999999988777777888888999999987445577899999999999998889999999885444442
Q ss_pred hhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC--hhHHHHHhhcCC---HHHHHHHHHHHh
Q 000166 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRPLERSIEKLD---DVRRNKLSEMIA 501 (1974)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G--e~~l~~~l~~Ld---~~kk~KI~e~~~ 501 (1974)
+..-+++|-+..+|+|.+.-||-.|.++|+.+...-- -+.+..-++.+| +.-+++++|.+.
T Consensus 177 -----~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 177 -----KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp -----HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred -----cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3446789999999999999999999999998874322 122333344444 566778888764
No 62
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.30 E-value=0.00062 Score=77.42 Aligned_cols=183 Identities=12% Similarity=0.085 Sum_probs=134.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhh-cCCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-cchh
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSR 365 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~-~y~~ 365 (1974)
-+..-+.+..+..|.+|+..|..+.. ++..... --...+..|...+.+.|..+...|+.+|+.|+.+-..... -...
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 46777888889999999999998874 2221100 0012677888899988999999999999999865332211 1234
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1974)
..+|.+++-+++....|+..+..+|-.+... ... . ..+++.+...+.+.++.++..++..|....... +...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 5899999999999999999998888888642 100 0 235677888999999999999998888776432 2222
Q ss_pred hHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 440 ~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
..+. ...++.++.++.+.+++||..|+.+|..|.
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 2222 248899999999999999999999998664
No 63
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.28 E-value=0.044 Score=69.75 Aligned_cols=183 Identities=15% Similarity=0.165 Sum_probs=119.9
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh
Q 000166 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS 933 (1974)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~Rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~ 933 (1974)
+++++.+.+.|=..+.+|+.++.++++. .|+.|+.=.-..+++.|-.-|. +.|..++..|+.+++.||.+-- .-.+.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~-e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-EQTKA 138 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH-HHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHHHH
Confidence 6789999999999999999999999963 3444432111225667777775 5567888899999999986421 12222
Q ss_pred -h-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-cc------hhhhHHHHHHHhcccCCcchHHH---HHHHHHHHh
Q 000166 934 -S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL------DKMVPYVTTALTDAKLGAEGRKD---LFDWLSKQL 1001 (1974)
Q Consensus 934 -~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl------~~~~~~i~~~L~~~~~~p~~R~e---~l~wL~~~l 1001 (1974)
+ .+.+|.++..|.+....||+.|..||-.+.... .. ...++.+...|.++.. ...... ...|....+
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDL-STLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCG-GGSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccc-hhhhHHHHHHHHHHHHHH
Confidence 1 257899999999999999999999998775321 11 1224455666654321 111222 334444444
Q ss_pred ccCCC-Ccc---hhhhhhhHhhhccCCChHHHHHHHHHHHHHH
Q 000166 1002 TGLSG-FPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1974)
Q Consensus 1002 ~~~~~-~~~---~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1974)
..... ... ...++.+++.+|.+.+.+||..|..+|..+.
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 43332 222 2345556788899999999999888776553
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.27 E-value=0.004 Score=70.15 Aligned_cols=186 Identities=18% Similarity=0.123 Sum_probs=137.5
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc-CCCCCC-ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc---cccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR---THFSGS 363 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~-pKi~~~-dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr---~~F~~y 363 (1974)
.+..-+.+.....|..++..|..+... +..... --...+..|...+.|.+..+...|+.+++.|+.+-. ..+.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 125 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 125 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 466777888899999999999988753 211100 001357778888889999999999999999995321 1121
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000166 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1974)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1974)
....++.+++-+++..+.|+..+..+|-.+... .... ..+++.+...+.+.+|.+|..++..|...... .+.
T Consensus 126 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~ 203 (252)
T 4hxt_A 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTS 203 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHH
Confidence 236799999999999999999999888888642 1000 12567888999999999999998888876543 222
Q ss_pred HHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
....+. ..+++.++..+.+.+++||+.|..+|+.|...-+.
T Consensus 204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 222222 34789999999999999999999999999886654
No 65
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.26 E-value=0.0012 Score=78.66 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCC--CChhHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHH---hccccccchhhhHHHHHH
Q 000166 300 SERKDAVAELTKLASTKRIAP--GDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARG---LRTHFSGSSRFLLPVLLE 373 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~--~dy~dL~~~Lkk-~l~DsNv~vv~~A~~~i~~LA~g---Lr~~F~~y~~~~l~~lLe 373 (1974)
.+|..||+.|..++.+..... ...|-+ ..|-. +|.+.|..|...|+.||+.+|.+ .+..+-. ...+|+++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l-~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~--~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGM-HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG--LGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHH-HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHH
Confidence 478899999988775322110 012333 44445 77888999999999999999964 2222222 268899999
Q ss_pred Hhc-cCCHHHHHHHHHHHHHHHHhcCCC-hh-----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh-hh
Q 000166 374 KLK-EKKPTVAESLTQTLQAMHKAGCLN-LV-----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KD 445 (1974)
Q Consensus 374 klK-EKK~~V~eA~~~aLda~~~~~~~~-l~-----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~ 445 (1974)
-|+ +.+..|++.+.-||-.++.. ... .. ..++.+...|++..+.++.+++..|.......+ .....+. ..
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g 209 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMG 209 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTT
T ss_pred HHccCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcC
Confidence 999 46899999988888888753 111 11 245667788899999999999877776665432 2212222 34
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
++|.++.+|...+++||+.|..+|+.|.+.
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999875
No 66
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.26 E-value=0.0026 Score=70.19 Aligned_cols=151 Identities=11% Similarity=0.105 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC
Q 000166 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1974)
Q Consensus 322 dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~-y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~ 400 (1974)
++......|.+++.+.|..+...|+.+|+.|+.+=...-.. .....+|.+++-+++..+.|++.+..+|-.+... ...
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcH
Confidence 34455667778889899999999999999999653221111 1236899999999999999999988888887532 101
Q ss_pred h------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 401 L------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 401 l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
. ...++.+...|++.+|.+|..++.-|...... .......+. ..++|.++..+.+.+++||..|+.+|+.+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0 12567888999999999999888777655432 222222222 458999999999999999999999999987
Q ss_pred H
Q 000166 474 K 474 (1974)
Q Consensus 474 k 474 (1974)
.
T Consensus 167 ~ 167 (210)
T 4db6_A 167 S 167 (210)
T ss_dssp T
T ss_pred c
Confidence 5
No 67
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.95 E-value=1.9 Score=59.58 Aligned_cols=383 Identities=13% Similarity=0.065 Sum_probs=207.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHhhhhcCChhhHHHHHHHHHHHHhhc--hh----hh-HH---HHH
Q 000166 64 SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV----DV-FL---DVM 133 (1974)
Q Consensus 64 sN~~aqEk~leal~~~l~~a~~~~~~~~~~v~~~lveK~L~~r~ktk~~a~e~~l~~vE~e--~~----~~-v~---e~l 133 (1974)
.|......+++++..|+...+... -....++..+.++.+ +.+..+..|.+|+..++... .. +. +. ..+
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~ 284 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNT 284 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHH
Confidence 467778888888888876543211 011345666666655 36788888999998888652 11 11 11 111
Q ss_pred HHHhhc-cCchh-------------HHHHHHHHHHHHHhhCCCc---c--------ChhHHHhhchhhhcCCChhHHHHH
Q 000166 134 EKAIKN-KVAKA-------------VVPAIDVMFQALSEFGAKI---I--------PPKRILKMLPELFDHQDQNVRASS 188 (1974)
Q Consensus 134 l~~~~~-K~PKv-------------vaaai~~l~~~l~~FG~kv---v--------~~K~ilk~l~~lf~h~dk~VR~ea 188 (1974)
+..+.. =.|.+ -..-+..+.+.+..||-.. + .+..++..+=.+..|.|-.|+..+
T Consensus 285 l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~ 364 (1049)
T 3m1i_C 285 LQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTT 364 (1049)
T ss_dssp HHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 111111 11111 0111223344444444211 0 022345555555568888898888
Q ss_pred HHHHHHHHHhh--CCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHHhhhhhcccCCCCCCCCCCCCCC
Q 000166 189 KGLTLELCRWI--GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADV 266 (1974)
Q Consensus 189 ~~L~velyrwl--G~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (1974)
..+...+-..+ .+. . ....+|...+-+..-+.++.- |. + . +-.
T Consensus 365 lefw~~l~~~l~~~~~-~----~~~~~~~l~~Lv~~ll~~m~~---~e-------d--------------~---~~~--- 409 (1049)
T 3m1i_C 365 LDYWHNLVADLFYEPL-K----KHIYEEICSQLRLVIIENMVR---PE-------E--------------V---LVV--- 409 (1049)
T ss_dssp HHHHHHHHHHHHHSTT-C----GGGGHHHHHHHHHHHHHTCCC---CT-------T--------------C---CEE---
T ss_pred HHHHHHHHHHHHhchh-H----HHHHHHHHHHHHHHHHHhcCC---Cc-------c--------------e---eee---
Confidence 87766665533 121 1 122344444444444444310 10 0 0 000
Q ss_pred CCCCCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCC-hhHHHHHHHHHhc--chhHHHHH
Q 000166 267 PPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD-FTEVCRTLKKLIT--DVNIAVAV 343 (1974)
Q Consensus 267 ~~~iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~d-y~dL~~~Lkk~l~--DsNv~vv~ 343 (1974)
+-|+.+ ++- +|.+ .+.-|..|+.+-+-|..+... .+.+ ..-+...|...+. ..|-...-
T Consensus 410 --~dd~~e-----~~r------~~~~--d~d~~~~~~~~~~~L~~l~~~---~~~~~l~~v~~~l~~~l~~~~~~W~~~e 471 (1049)
T 3m1i_C 410 --ENDEGE-----IVR------EFVK--ESDTIQLYKSEREVLVYLTHL---NVIDTEEIMISKLARQIDGSEWSWHNIN 471 (1049)
T ss_dssp --ECTTSC-----EEE------CSSC--CHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred --eCCCCc-----chH------hhhc--cchHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 001100 000 0111 111267777666555555421 1111 1233344455553 35667788
Q ss_pred HHHHHHHHHHHHhcccc-ccchhhhHHHHHHHh-----ccCCHHHHHHHHHHHH---HHHHhcCCChhhhHHHHHHHhhc
Q 000166 344 EAIQAIGNLARGLRTHF-SGSSRFLLPVLLEKL-----KEKKPTVAESLTQTLQ---AMHKAGCLNLVDVVEDVKTSVKN 414 (1974)
Q Consensus 344 ~A~~~i~~LA~gLr~~F-~~y~~~~l~~lLekl-----KEKK~~V~eA~~~aLd---a~~~~~~~~l~~~~e~i~~al~~ 414 (1974)
.|+-+++.+|.++...- ..|...+++.++.-. ++.++.|+..+..++- .|+..+.--+..+++-+..+|.+
T Consensus 472 aal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~ 551 (1049)
T 3m1i_C 472 TLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE 551 (1049)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 89999999998876542 234555666555411 2455555543333333 22222111256677888889999
Q ss_pred CCchhHHHHHHHHHHHHhhCChhHH-------hHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC-hhHHHHHhh
Q 000166 415 KVPLVRSLTLNWVTFCIETSSKAAV-------LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIE 486 (1974)
Q Consensus 415 KnP~vk~etl~~L~r~l~~~~~~~~-------~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G-e~~l~~~l~ 486 (1974)
.+|.|+..+..-|.+..+.+..... .+.+..++..+..++++-+.+-+...++|++.++...| .....+++.
T Consensus 552 ~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~ 631 (1049)
T 3m1i_C 552 THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLS 631 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999998888887776543321 14456777777788888888888999999999999999 355777887
Q ss_pred cCCHHHHHHHHHHHh
Q 000166 487 KLDDVRRNKLSEMIA 501 (1974)
Q Consensus 487 ~Ld~~kk~KI~e~~~ 501 (1974)
.|=+.-..+...++.
T Consensus 632 ~l~~~~~~~~~~~~~ 646 (1049)
T 3m1i_C 632 DLMQLPNMAWDTIVE 646 (1049)
T ss_dssp HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 766555555555553
No 68
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.37 E-value=0.033 Score=66.24 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHH---HcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh--hhhhHHHH
Q 000166 868 KVRLESIEAVNKILE---EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDIL 942 (1974)
Q Consensus 868 K~RkEaLe~v~~il~---~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~--k~l~~~il 942 (1974)
..|..|++.+..+++ .+|..++- |-++.-+..-|...|..|...|+.+|+.+|.. .+.+.+++ ...+|+++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~---G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQL---SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHT---THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHc---CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHH
Confidence 468999999999995 24444333 44443333256888999999999999999864 34455443 26889999
Q ss_pred HHhc-cCchhHHHHHHHHHHHHHHhc--cch-----hhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC-C-cc--h
Q 000166 943 KCLG-DNKKHMRECTLTVLDAWLAAV--HLD-----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F-PD--A 1010 (1974)
Q Consensus 943 ~~l~-D~K~~vR~aa~~alda~~~~~--gl~-----~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~-~-~~--~ 1010 (1974)
..|. +.+..+|..|..||..+.... +.+ ..++.+...|.++ ++.+|.++. |+...|..... . .. -
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~-~aLs~L~~~~~~~~~~vv~ 207 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSA-FLLQNLLVGHPEHKGTLCS 207 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHH-HHHHHHHHHCGGGHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH-HHHHHHHhCChHHHHHHHH
Confidence 9998 468899999999998876422 122 3455677777754 577788775 44445543321 1 11 1
Q ss_pred hhhhhhHhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1011 ~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
...++|++..|.+.+.+||..|-.+|+.++..
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 34677799999999999999999999998876
No 69
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.31 E-value=6.4 Score=54.14 Aligned_cols=287 Identities=15% Similarity=0.176 Sum_probs=165.1
Q ss_pred hhhhHHHHHHHHHHHhhch------------HhHHHHHHHhhh-----hcCChhhHHHHHHHHHHHHHHhccCccchHhH
Q 000166 697 KTRAHAMKCLTTFSEAVGP------------GFIFERLYKIMK-----DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1974)
Q Consensus 697 K~r~~a~e~L~~~aE~~~p------------~~V~~~l~~~~~-----~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~l 759 (1974)
+..+.+--+|-+++|.+.. ..+++ ++..+. ...+|+|+.-++..+++--+-|....=-+.++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~-ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~ 536 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ-ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPAL 536 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH-HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHH-HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 4577777788888887542 13443 333332 37899999999999998888777655456788
Q ss_pred HHHHhh-hcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCC
Q 000166 760 IDFCKD-TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1974)
Q Consensus 760 I~~~k~-~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~ 838 (1974)
+.++-. .|+.++|+.||.+|..++..+-+-.++.|.+|+++ +++.|..-+.... + |...
T Consensus 537 L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~-~----~~~~----------- 596 (980)
T 3ibv_A 537 IEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISV-S----PVTD----------- 596 (980)
T ss_dssp HHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCC-C----CCCC-----------
T ss_pred HHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcC-C----CCCc-----------
Confidence 888755 24999999999999999999888877776666533 6655554443211 0 1000
Q ss_pred CCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC--CCCCCccchHHH----Hhhhccc-----h
Q 000166 839 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR--IQPAGTGELFGG----LRGRLYD-----S 907 (1974)
Q Consensus 839 ~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr--I~p~~~geL~~a----Lk~Rl~D-----s 907 (1974)
.|. | ....+++.. +.....+..-.|++..|+...+.- -++..+..|+.. +...+.. .
T Consensus 597 ---~~~-~-----~~~~~~~~~---~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~ 664 (980)
T 3ibv_A 597 ---MDA-P-----VPTLNSSIR---NSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALE 664 (980)
T ss_dssp -----C-S-----SCCHHHHHH---TTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--C
T ss_pred ---ccc-c-----ccchhhhcc---cCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 000 0 000112221 224566777777777777532100 011111222222 2222211 2
Q ss_pred hHhHHHHHHHHHHHHHHhcChh------HHhhhhhhhHHHHHHhc--cCchhHHHHHHHHHHHHHHhcc--chhhhHHHH
Q 000166 908 NKNLVMATLITLGAVASAMGPA------VEKSSKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVT 977 (1974)
Q Consensus 908 Nk~lv~~al~ii~~lA~amG~~------~~k~~k~l~~~il~~l~--D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~ 977 (1974)
++.-+...+..++.+|.+.... +....+..++.++..|. .+...||+++..++..++..+| +.+++|.+.
T Consensus 665 ~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i 744 (980)
T 3ibv_A 665 NIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLI 744 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHH
Confidence 2222334566678888877422 44445556666655554 3568999999999999999987 455566555
Q ss_pred HHHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhhH
Q 000166 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPA 1017 (1974)
Q Consensus 978 ~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~--~~~~~~~~p~ 1017 (1974)
+.|-+ ...+..=.+.|.++..-....+.. +.+..++.|+
T Consensus 745 ~~ll~-~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l 785 (980)
T 3ibv_A 745 SILLN-SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTL 785 (980)
T ss_dssp HHHHH-HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55542 122334566776655555455432 2344455553
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.22 E-value=0.072 Score=60.52 Aligned_cols=175 Identities=14% Similarity=0.133 Sum_probs=132.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l 368 (1974)
++.+-+.+++=+.-.-|+.-|..|+..--+.+++|.-+..+|..++.+-|=.+.-.|+..++.+ .....++-++
T Consensus 79 ~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~ 152 (265)
T 3b2a_A 79 VFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVR 152 (265)
T ss_dssp HHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHH
Confidence 4655566666666666777778888888889999999999999999999999999999998887 3333455566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcC--CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 369 ~~lLeklKEKK~~V~eA~~~aLda~~~~~~--~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
.-++.-++-|+..|-.|+..+|..+..+.. --+.+++++|.+.++|++|-++.-.+.-+.+.+...=+..+...+..+
T Consensus 153 ~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 153 TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKI 232 (265)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHH
Confidence 666666699999999999999999988610 128899999999999999999999999999998753222222222333
Q ss_pred HHHHHhhh-CCCCHHHHHHHHHHH
Q 000166 447 VPICMECL-NDGTPEVRDAAFSVL 469 (1974)
Q Consensus 447 ~~~l~k~l-~Ds~~~VR~aA~~~l 469 (1974)
...+-.+. -.+.|.+|+.|-...
T Consensus 233 ~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 233 SRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Confidence 33333333 588899999886543
No 71
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.14 E-value=2.1 Score=58.76 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHh----cchhHHHHHHHHHHHH--HHHHHhccccccchhhhHHHHHH
Q 000166 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI----TDVNIAVAVEAIQAIG--NLARGLRTHFSGSSRFLLPVLLE 373 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l----~DsNv~vv~~A~~~i~--~LA~gLr~~F~~y~~~~l~~lLe 373 (1974)
+.|+.|=..|...+ +.-+|.|..++..|-+.| .|.+-.-..-|+.++. .+.+-+..++ .+...+++.+++
T Consensus 148 ~VR~~AQ~~L~~~~---~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~-~~~~~~~~ali~ 223 (997)
T 1vsy_5 148 DIYKPAQGTLVHCM---KQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDY-KDIGRLIFLLIE 223 (997)
T ss_dssp HHHHHHHHHHHHHH---TTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcCh-HHHHHHHHHHHH
Confidence 56777766666554 334677777766555555 3566777777777766 6666666666 478899999999
Q ss_pred HhccCCHHHHHHHHHHHHHHHHhcCCC--------------------------------------hh----hhHHHHHHH
Q 000166 374 KLKEKKPTVAESLTQTLQAMHKAGCLN--------------------------------------LV----DVVEDVKTS 411 (1974)
Q Consensus 374 klKEKK~~V~eA~~~aLda~~~~~~~~--------------------------------------l~----~~~e~i~~a 411 (1974)
....-|++|+.-+..+.+.+..+...+ .. .+.+.+++.
T Consensus 224 ~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~ 303 (997)
T 1vsy_5 224 CCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLLVDLQDKLLDK 303 (997)
T ss_dssp TCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987777777776642110 00 111111222
Q ss_pred hh-cCC--chhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000166 412 VK-NKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1974)
Q Consensus 412 l~-~Kn--P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1974)
.+ +.. .....-++.||...+...... .-...+..+++.+.|..|.+|+-|..++..+++.+-.+.
T Consensus 304 ~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~----~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~ 371 (997)
T 1vsy_5 304 LDNEKDMGWKIRMFILRFVTQIQSNLESK----PDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLS 371 (997)
T ss_dssp HHSSTTCCSCHHHHHHHHHHHHTCCSSCC----CCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 21 111 233333333333332221111 113467789999999999999999999999988766544
No 72
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.51 E-value=0.019 Score=59.28 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=81.3
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH
Q 000166 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE 406 (1974)
Q Consensus 327 ~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e 406 (1974)
...|...+.|.|..+-..|+.+++.+. . . -++.+++.++|..+.||..+..+|-.+ .-...++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~----~----~---~~~~L~~~L~d~~~~vR~~A~~aL~~~------~~~~a~~ 76 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMG----D----E---AFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVE 76 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCS----S----T---THHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhC----c----h---HHHHHHHHHcCCCHHHHHHHHHHHHhc------CCHHHHH
Confidence 444555566666666555555554332 1 1 158999999999999998776665433 2245678
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000166 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1974)
Q Consensus 407 ~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1974)
.+...+++.+|.||..+...|.+.- . ...++.+...++|.++.||.+|..+|+.
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~----~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIG----G-------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHC----S-------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC----c-------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8889999999999998888777541 1 2357888999999999999999999864
No 73
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=95.19 E-value=0.25 Score=67.76 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=98.7
Q ss_pred hhhhhhcCCCCHHHHHHHHHHHHHHHHHcCh-hhh--hhhhHHHHHHHhhhhc-C-ChhhHHHHHHHHHHHHhhc---hh
Q 000166 55 PLFKKTVADSNAPVQDKALDALIAYLKAADA-DAG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELE---AV 126 (1974)
Q Consensus 55 ~l~kk~v~DsN~~aqEk~leal~~~l~~a~~-~~~--~~~~~v~~~lveK~L~-~-r~ktk~~a~e~~l~~vE~e---~~ 126 (1974)
+++.+.+.|+.-..|-.+.|.+..++..+-. ... ...-+|+..++.+||. + .+-|..-=..|+-.....- ..
T Consensus 511 ~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~ 590 (997)
T 1vsy_5 511 ELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRS 590 (997)
T ss_dssp HHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhh
Confidence 3445678999999999999999888755422 122 2245788899999997 5 5666553222222222222 23
Q ss_pred hhHHHHHHHHh-----hccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhh
Q 000166 127 DVFLDVMEKAI-----KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI 199 (1974)
Q Consensus 127 ~~v~e~ll~~~-----~~K~PKvvaaai~~l~~~l~~FG~kvv~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwl 199 (1974)
..++|.|..+- ..-.+=..+.-+..|..++.+.|-+.-..+.++..+- ++|.-++||++--.++..++...
T Consensus 591 ~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~ 666 (997)
T 1vsy_5 591 KTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQ 666 (997)
T ss_dssp HHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhh
Confidence 46666663211 1223445667899999999999998666788887777 99999999999999998888765
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.79 E-value=0.19 Score=55.08 Aligned_cols=165 Identities=15% Similarity=0.202 Sum_probs=118.4
Q ss_pred CcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc----cchhHhHHHHHHHHHHHHHHhcChh
Q 000166 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPA 929 (1974)
Q Consensus 854 it~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl----~DsNk~lv~~al~ii~~lA~amG~~ 929 (1974)
+-++++.-+.|.-|.+||.||--+-.|..+ |-||...|...| .-|- |.-.-+.||.++|.=
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---------~~el~epl~~kL~vm~~ksE------aIpltqeIa~a~G~l 97 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKT---------REDLYEPMLKKLFSLLKKSE------AIPLTQEIAKAFGQM 97 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---------CGGGHHHHHHHHHHHHHHCC------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhhcc------cCchHHHHHHHHhHH
Confidence 345566778999999999999999988864 456665554322 1111 333445677777743
Q ss_pred HH---hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000166 930 VE---KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1974)
Q Consensus 930 ~~---k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~ 1004 (1974)
.. .-++.++|-+++.+.=..+.+|=....+|..++..-. +..++.+|...|.++ |-.-|..+|.|+. .+
T Consensus 98 a~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk--d~~Dkl~aLnFi~----al 171 (253)
T 2db0_A 98 AKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK--NREDKLTALNFIE----AM 171 (253)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHH----TC
T ss_pred HHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHH----HH
Confidence 33 2477889999998777778889899999999988864 566777888888865 4567888999986 23
Q ss_pred CC-C-cchhhhhhhHhhhccCCChHHHHHHHHHHHHH
Q 000166 1005 SG-F-PDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1974)
Q Consensus 1005 ~~-~-~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1974)
.. . ....+.+.-+++.|.|++.-||..|-+.|+.+
T Consensus 172 Gen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 172 GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp CTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred hccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHH
Confidence 22 1 23455565699999999999999998888665
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.77 E-value=0.29 Score=55.72 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=140.9
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhh
Q 000166 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1974)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l 937 (1974)
+++=+.|+|=.++-.||-.+++++..+++....-.+-+++..+-.-+.+.|-.+..-|+.|+..|-.+.-.+=+.|.| +
T Consensus 38 L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K-l 116 (265)
T 3b2a_A 38 ILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK-A 116 (265)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH-H
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH-H
Confidence 455689999999999999999999987666666556788888888889999999999999999999998777777765 4
Q ss_pred hHHHHHHhccCchhHHHHHHHHHHHHHHhcc-chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhh
Q 000166 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1974)
Q Consensus 938 ~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1974)
..++....+++...++..+.+.+... ..+. ...+...+..-+.+. |+++|.-.+..+.+--.....+.-+..++.-
T Consensus 117 ~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~e 193 (265)
T 3b2a_A 117 AKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILDE 193 (265)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTT
T ss_pred HHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 56777888899999999999999998 4444 466666777777543 7899999998887554333333334444444
Q ss_pred HhhhccCCChHHHHHHHHHHHHHHHh
Q 000166 1017 ASIAMTDKSSDVRKAAEACIVEILRA 1042 (1974)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1974)
+---|...++.+|+.|=.+|..+...
T Consensus 194 I~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 194 IPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 55557777999999998888766543
No 76
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.66 E-value=21 Score=49.18 Aligned_cols=173 Identities=14% Similarity=0.130 Sum_probs=104.1
Q ss_pred cCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHH----hccccccchhhhHHH
Q 000166 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARG----LRTHFSGSSRFLLPV 370 (1974)
Q Consensus 296 s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~g----Lr~~F~~y~~~~l~~ 370 (1974)
++.=..|++|-+.|..+-++| +|-. .+..++. +.+..+-..|+..+....+. +...-..+.|..+-.
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~p-----~~~~---~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~ 98 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDNP-----DAWQ---KADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVG 98 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHST-----TGGG---GHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhCc-----hHHH---HHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHH
Confidence 344457999999998886665 2222 2223333 66888889999999887753 222333445544444
Q ss_pred HHHHhc-cC-----CHHHHHHHHHHHHHHHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh---CCh----
Q 000166 371 LLEKLK-EK-----KPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET---SSK---- 436 (1974)
Q Consensus 371 lLeklK-EK-----K~~V~eA~~~aLda~~~~~~-~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~---~~~---- 436 (1974)
.+.... +- .+.|+..+..++-.++.+.. -.-.++++++...++ .++..+...+..|....+. ...
T Consensus 99 ~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~ 177 (1049)
T 3m1i_C 99 MIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMT 177 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSC
T ss_pred HHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 444332 11 35899999999999988721 124478888888886 4555555444444433321 111
Q ss_pred --------hHHhHhhhhhHHHHHhhhCC-CCHHHHHHHHHHHHHHHHHhC
Q 000166 437 --------AAVLKVHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 437 --------~~~~~~~k~~~~~l~k~l~D-s~~~VR~aA~~~l~~lmk~~G 477 (1974)
..+...+..+...+..++++ .++++|.++.+|+..++.-+.
T Consensus 178 ~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~ 227 (1049)
T 3m1i_C 178 QAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP 227 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Confidence 11222234456666677754 357899999999987765433
No 77
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.33 E-value=2.2 Score=58.86 Aligned_cols=383 Identities=12% Similarity=0.073 Sum_probs=212.5
Q ss_pred HHHHHHhcc--hhHHHHHHHHHHHHHHHHHhccc-cccchhhhHHHHHHHhc-----cCCHHHHHHHHHHHHH---HHHh
Q 000166 328 RTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLK-----EKKPTVAESLTQTLQA---MHKA 396 (1974)
Q Consensus 328 ~~Lkk~l~D--sNv~vv~~A~~~i~~LA~gLr~~-F~~y~~~~l~~lLeklK-----EKK~~V~eA~~~aLda---~~~~ 396 (1974)
..|+..+.+ .+-...-.++=|+|.|+.|+... -.++...++|.++.-.. |.|+.|++.+.-++-. |...
T Consensus 454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~ 533 (1023)
T 4hat_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1023)
T ss_dssp HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc
Confidence 334444442 45677778888999999999865 77899999999998765 5777666554444432 2221
Q ss_pred cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH-------HhHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000166 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1974)
Q Consensus 397 ~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~-------~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1974)
+..-|..++..+..+|...+|.|...+..=|.+.-+.+...- ..+++..++..+..++++-++.-+...++++
T Consensus 534 ~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 112266777888888888889887766554444433332211 1234566777788888888999999999999
Q ss_pred HHHHHHhChhH-HHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCC
Q 000166 470 AAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPV 548 (1974)
Q Consensus 470 ~~lmk~~Ge~~-l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~ 548 (1974)
++++..++... ...+++.|=+.--.+..++++.... . |.--......+.-.
T Consensus 614 ~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~-----~--------------~~~~~d~~~~~~l~--------- 665 (1023)
T 4hat_C 614 GIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTA-----N--------------PTLLLDSETVKIIA--------- 665 (1023)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----C--------------TTGGGCHHHHHHHH---------
T ss_pred HHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhc-----C--------------chhhcCHHHHHHHH---------
Confidence 99999999544 6667777766666666666543100 0 00000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHH
Q 000166 549 SAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQ 628 (1974)
Q Consensus 549 ~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~Ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~E~l~~~ 628 (1974)
..=++-..+..-++..+..++. .-|..=++-|+...+.
T Consensus 666 -----------------------------------------~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~y~~~s~~ 703 (1023)
T 4hat_C 666 -----------------------------------------NIIKTNVAVCTSMGADFYPQLG-HIYYNMLQLYRAVSSM 703 (1023)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 0000000000011122222221 1244444444444333
Q ss_pred HHh-h---hccc--------------hhHHHHHHHHHhcCCCccchHHHHHHHHHHHH-HHHHhcCCCCccchhhhccch
Q 000166 629 VEA-V---QNLD--------------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN-YLAATATKFPKKCVVLCLLGI 689 (1974)
Q Consensus 629 v~~-~---~~~~--------------~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~-~la~~~~~fs~~~~~~~l~~l 689 (1974)
+.. . .... ....++.+|+.+.+.-.+-.-+.+.-.++.+. ......+..-..++-.++..+
T Consensus 704 i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~i 783 (1023)
T 4hat_C 704 ISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV 783 (1023)
T ss_dssp HHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHH
Confidence 321 0 0000 01233444444433322222222333333322 222222223345667788888
Q ss_pred hhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHHhccC--ccc---hHhHHHH
Q 000166 690 SERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD--HKNPKVLSEGILWMVSAVEDFGVS--HLK---LKDLIDF 762 (1974)
Q Consensus 690 veKlgD~K~r~~a~e~L~~~aE~~~p~~V~~~l~~~~~~--~KnPKv~ae~l~wl~~ai~eFG~~--~l~---~K~lI~~ 762 (1974)
|+|+|+. +....-.+|-.+.|.+ +..+.+ .-+|..+.+-...+..++...=.. .++ .|.+|+.
T Consensus 784 v~~~~~~-~~~~~~~il~~vf~~T---------l~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~ 853 (1023)
T 4hat_C 784 VEKVGHM-IPQGVILILQSVFECT---------LDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDA 853 (1023)
T ss_dssp HHHHGGG-CHHHHHHHHHHHHHHH---------HHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHh-hhhhhHHHHHHHHHHH---------HHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHH
Confidence 8888863 4444444444443332 222211 457999999999988887753211 133 4789998
Q ss_pred HhhhcCCCccHHHHHHHHHHHHHHHhhhC
Q 000166 763 CKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1974)
Q Consensus 763 ~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G 791 (1974)
+.=+ +.|++..|=..+++.+-.+...+.
T Consensus 854 ~~~a-~~h~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 854 ICWA-FKHNNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHH-HTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCchHHHHHHHHHHHHHHHHHH
Confidence 8775 999999999999999988876554
No 78
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.11 E-value=0.24 Score=52.46 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=84.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-. +-+|++-.| -++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 18 l~~~dw~~-------ileicD~I~--~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWGL-------ILDICDKVG--QSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHHH-------HHHHHHHHT--TSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH-------HHHHHHHHH--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 56788964 333443322 2344457999999999999999999999999999999999999864 466887
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000166 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1974)
Q Consensus 940 ~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1974)
.+...+...-+.|++-+++.+..|.....-++=+..|.+.
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 128 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAM 128 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 7777776677899999999999999987655444544443
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.93 E-value=0.13 Score=52.98 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=68.6
Q ss_pred hhHHHHhhcCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccccccchHHHHH
Q 000166 1258 LPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337 (1974)
Q Consensus 1258 lP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Kal~~iA 1337 (1974)
+|.|+.-+.|+...||...-.. +..+. ....++.|++.++..|+.+|.+++.-|+.+ +...+++.+.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~a---L~~~~-~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~---------~~~~a~~~L~ 110 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWI---IGNFQ-DERAVEPLIKLLEDDSGFVRSGAARSLEQI---------GGERVRAAME 110 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHH---HGGGC-SHHHHHHHHHHHHHCCTHHHHHHHHHHHHH---------CSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH---HHhcC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------CcHHHHHHHH
Confidence 4888888888888888754333 33332 356788999999999999999999999875 2446788888
Q ss_pred HHhccCChhHHHHHHHHHH
Q 000166 1338 SLTAERDGEIRKAALNTLA 1356 (1974)
Q Consensus 1338 ~~i~drD~~VR~AALn~l~ 1356 (1974)
.++.|.|+.||.+|+.+|+
T Consensus 111 ~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 111 KLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHTTSCCTHHHHHHHHHGG
T ss_pred HHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999886
No 80
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.84 E-value=30 Score=47.62 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=107.8
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHhccc----cccchhhhHH
Q 000166 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV---NIAVAVEAIQAIGNLARGLRTH----FSGSSRFLLP 369 (1974)
Q Consensus 297 ~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~Ds---Nv~vv~~A~~~i~~LA~gLr~~----F~~y~~~~l~ 369 (1974)
+.=..|++|.+-|..+-++|- -....-.++.++ |..|-.-|++++....+.|... =..+.|..+-
T Consensus 20 sd~~~r~~A~~~L~~~q~sp~--------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll 91 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSST--------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVW 91 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHSTT--------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChh--------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHH
Confidence 357889999888888766542 233444556533 7899999999999888866665 4556666666
Q ss_pred HHHHHhc--cCCHHHHHHHHHHHHHHHHhc-CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh----h---C--C--
Q 000166 370 VLLEKLK--EKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----T---S--S-- 435 (1974)
Q Consensus 370 ~lLeklK--EKK~~V~eA~~~aLda~~~~~-~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~----~---~--~-- 435 (1974)
.++.+.. .-.+.|+..+..+|-.++.+. -..-.++++++...+.+.++. ....++-|.+. . . +
T Consensus 92 ~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~---~~~~~~LriL~~i~EEv~~~~~~~~ 168 (980)
T 3ibv_A 92 SYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQS---EFSNFYLKVLLSIGDEIADSLVLKT 168 (980)
T ss_dssp HHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHCCCCSCCC
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChh---HHHHHHHHHHHHhHHHHHhcccccC
Confidence 6776653 345689999999999999861 123457888888888766652 23334444443 1 0 0
Q ss_pred -----hh-HHhHh-----hhhhHHHHH----hhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000166 436 -----KA-AVLKV-----HKDYVPICM----ECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1974)
Q Consensus 436 -----~~-~~~~~-----~k~~~~~l~----k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1974)
+. .+.+. +..+.+.++ .+.+..+++++..+.+||+..+.-+.
T Consensus 169 ~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~ 225 (980)
T 3ibv_A 169 DVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN 225 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Confidence 10 01111 111233333 44444788999999999988886433
No 81
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=93.61 E-value=0.26 Score=53.52 Aligned_cols=107 Identities=13% Similarity=0.310 Sum_probs=80.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-.=.| |-.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 28 ~~~~Dw~~~le----icD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSLIMD----ICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHHHHH----HHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHHHHH----HHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 45679975333 3333321 244447999999999999999999999999999999999999854 355887
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHH
Q 000166 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVT 977 (1974)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~ 977 (1974)
.++..+.. .-+.|++-+++.+..|....+-+.=+..|.
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~ 137 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLIS 137 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 77777754 336999999999999999876443344333
No 82
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=93.14 E-value=0.47 Score=50.74 Aligned_cols=112 Identities=14% Similarity=0.215 Sum_probs=83.8
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
.+.+.||-.=. +|=.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..-.|+.|-.. .+-|+
T Consensus 13 ~l~~~dw~~~l----eicD~I~~-----~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (148)
T 1mhq_A 13 SMSEQDWSAIQ----NFCEQVNT-----DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFL 83 (148)
T ss_dssp TCSSCCHHHHH----HHHHHHHH-----SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCCcCHHHHH----HHHHHHHc-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHH
Confidence 34568996533 33333332 133347899999999999999999999999999999999999765 56788
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
..+...+.++ -..||+-+++.+..|....+-++-+..+-..|+
T Consensus 84 ~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 84 NELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 8888888763 569999999999999998754433333334443
No 83
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.01 E-value=0.5 Score=50.58 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=79.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-. +-.|++--| -++.+-.|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 24 l~~~dw~~-------ileicD~I~--~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWAS-------INGFCEQLN--EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHHH-------HHHHHHHGG--GSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH-------HHHHHHHHH--CCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45678863 333443322 2344447899999999999999999999999999999999999754 667888
Q ss_pred HHHHHhccC------chhHHHHHHHHHHHHHHhccch
Q 000166 940 DILKCLGDN------KKHMRECTLTVLDAWLAAVHLD 970 (1974)
Q Consensus 940 ~il~~l~D~------K~~vR~aa~~alda~~~~~gl~ 970 (1974)
.++..+.++ -..||+-+++.+..|.....-+
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 888888763 5689999999999999987543
No 84
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.32 E-value=0.29 Score=53.57 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=83.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-. .-+|-.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 26 l~~~Dw~~----ileicD~I~~-----~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 26 NRQEDWEY----IIGFCDQINK-----ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHc-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 45789964 3333334432 233447899999999999999999999999999999999999864 566888
Q ss_pred HHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000166 940 DILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1974)
Q Consensus 940 ~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1974)
.++..+..+ -..||+-+++.+..|....+-+.-+..+-..|+
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 888888642 379999999999999998865443344444444
No 85
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=91.99 E-value=0.48 Score=51.08 Aligned_cols=110 Identities=19% Similarity=0.351 Sum_probs=80.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
+.+.||-.=.|=-| +|+. ++.+.-|.+++|++||+ ..|.+++..||.++..+..=.|+.|... .+-++
T Consensus 29 l~~~Dw~~~leicD----~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWALNMEICD----IINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHHHHHHHH----HHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHHHHHHHH----HHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 45678975433333 3331 23445799999999997 6899999999999999999999999864 45688
Q ss_pred HH-HHHHhccC---chhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 939 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 939 ~~-il~~l~D~---K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
.. ++..+.++ ...||+-+++.+..|....+-++-+..|.+..
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y 145 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIY 145 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 87 56666542 34899999999999999876554445444443
No 86
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=91.70 E-value=0.66 Score=58.40 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=102.5
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchh-h
Q 000166 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR-F 366 (1974)
Q Consensus 288 ~~f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~-~ 366 (1974)
+.+...|=+.+|..|=-|--.|-.+++..--..|-. ...|. -+|++++..|| -..|.-|+. .
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLA---LDRFGDYVSDq 239 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILV---TDKFNDFVDDR 239 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHH---HBCCBBCSSSS
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHH---hccccccccCe
Confidence 367778899999999988888877765322111111 22233 66777777776 356777754 2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhh
Q 000166 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1974)
Q Consensus 367 ~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1974)
++ +.|||.+.++|-++ .+-... -+++..+...+.+..+++|-..+.=|.-. .+.+.. +..+
T Consensus 240 VV-----------APVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~V 300 (800)
T 3oc3_A 240 TV-----------APVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGL 300 (800)
T ss_dssp CB-----------CHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHH
T ss_pred ee-----------eehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHH
Confidence 32 45899999999999 551122 35556555666888999998777655544 121112 4778
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 447 VPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+++++.+|.|.+-|||..|+++|-.+.
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999999999999999999988777
No 87
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=91.42 E-value=0.42 Score=51.33 Aligned_cols=110 Identities=16% Similarity=0.301 Sum_probs=79.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc-hhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~D-sNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
+.+.||-. .-+|=.+|+. ++.+--|.+++|++||.. .|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 29 l~~~Dw~~----ileicD~In~-----~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 29 VQTEDWGQ----FMHICDIINT-----TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp CCSCCHHH----HHHHHHHHHH-----STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCccHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 55678973 3333333332 234447999999999985 488899999999999999999999865 45677
Q ss_pred HH-HHHHhccCc---hhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000166 939 SD-ILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1974)
Q Consensus 939 ~~-il~~l~D~K---~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1974)
.. ++..+.++. ..||+-+++.+..|.....-++=++.|.++.
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y 145 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVY 145 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 76 555555432 3699999999999999886554445555443
No 88
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=90.97 E-value=36 Score=47.06 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhc-----------------cCCHHHH------HHHHHHHHHHH
Q 000166 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK-----------------EKKPTVA------ESLTQTLQAMH 394 (1974)
Q Consensus 338 Nv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklK-----------------EKK~~V~------eA~~~aLda~~ 394 (1974)
++.-...-++|+..+|+++|..|.+|+..+++.+++..+ .|-+.|| ..+..-+..+.
T Consensus 660 ~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i 739 (1023)
T 4hat_C 660 TVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYI 739 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556799999999999999999999999997532 2333222 22334444454
Q ss_pred HhcCCCh--------hhhHHHHHHHhhcCCchhHH-HHHHHHHHHHhhCCh---hHHhHhhhhhHHHHHhhhCC---CCH
Q 000166 395 KAGCLNL--------VDVVEDVKTSVKNKVPLVRS-LTLNWVTFCIETSSK---AAVLKVHKDYVPICMECLND---GTP 459 (1974)
Q Consensus 395 ~~~~~~l--------~~~~e~i~~al~~KnP~vk~-etl~~L~r~l~~~~~---~~~~~~~k~~~~~l~k~l~D---s~~ 459 (1974)
.. +... ..+++-|+.--.+-+|..|. +.+..++-.+.+... +.+..++..+...-+..+++ ..|
T Consensus 740 ~~-~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~P 818 (1023)
T 4hat_C 740 SK-ARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYP 818 (1023)
T ss_dssp HH-CSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred hc-CCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccCh
Confidence 43 3332 23333344333455677775 555555555554332 22334444444444455555 789
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000166 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1974)
Q Consensus 460 ~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1974)
+.|+.=+..+.++..+. +..++ .+++..-+.+.+++
T Consensus 819 e~r~~ff~ll~~~~~~~----f~~~~-~~~~~~~~~~~~~~ 854 (1023)
T 4hat_C 819 EHRVEFYKLLKVINEKS----FAAFL-ELPPAAFKLFVDAI 854 (1023)
T ss_dssp HHHHHHHHHHHHHHHHC----THHHH-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC----hHHHH-cCCHHHHHHHHHHH
Confidence 99999999888887763 22233 37766656666654
No 89
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=90.77 E-value=0.42 Score=54.32 Aligned_cols=100 Identities=16% Similarity=0.304 Sum_probs=77.2
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000166 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1974)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1974)
.+.+.||..=.| |-.+|+. ++.+--|.+++|++||...|.+++..||.++..+..-.|+.|... .+-++
T Consensus 17 ~~~~~dw~~~le----icd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl 87 (220)
T 1dvp_A 17 LRLEPDWPSILL----ICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENC 87 (220)
T ss_dssp TCSSCCHHHHHH----HHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHH
T ss_pred CCCCcCHHHHHH----HHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHH
Confidence 345789986444 3333431 233447999999999999999999999999999999999999654 45577
Q ss_pred HHHHHHhccC-chhHHHHHHHHHHHHHHhccc
Q 000166 939 SDILKCLGDN-KKHMRECTLTVLDAWLAAVHL 969 (1974)
Q Consensus 939 ~~il~~l~D~-K~~vR~aa~~alda~~~~~gl 969 (1974)
..+...+++. -..||+-+++.+..|....+-
T Consensus 88 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 88 EMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 7777766653 368999999999999988653
No 90
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=90.65 E-value=1.8 Score=52.66 Aligned_cols=187 Identities=9% Similarity=0.013 Sum_probs=125.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc--CCCCC--CChhHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHH---hcccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST--KRIAP--GDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARG---LRTHF 360 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~--pKi~~--~dy~dL~~~Lkk~l-~DsNv~vv~~A~~~i~~LA~g---Lr~~F 360 (1974)
-+..-+.+..=..|..|.-.|..|... +.... .+.| .+..|-++| ...+..+...|+.++..|+.+ .+..+
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i 209 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 209 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHH
Confidence 366667777777888888888887642 11100 1112 344555543 345677888999999999973 33333
Q ss_pred ccchhhhHHHHHHHhccCCH----HHHHHHHHHHHHHHHh--cCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000166 361 SGSSRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1974)
Q Consensus 361 ~~y~~~~l~~lLeklKEKK~----~V~eA~~~aLda~~~~--~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1974)
.. ....+|+|++-++..+. .|++.+..+|-.+..+ ++.. - ...++.+...|.+.++.++.++..-|.
T Consensus 210 ~~-~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 288 (354)
T 3nmw_A 210 CA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288 (354)
T ss_dssp HH-STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HH-hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 21 35789999999987765 4888888888877652 0100 0 124567788899999999999888777
Q ss_pred HHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 429 FCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 429 r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
.+-.. .......+. ...+|.|+.+|.+.++.+|+.|+.+|..|...-.+
T Consensus 289 nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 289 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 66422 222222222 34789999999999999999999999988875443
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=90.25 E-value=1.4 Score=53.52 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=103.0
Q ss_pred hccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccch---HHH
Q 000166 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKT---LPY 1295 (1974)
Q Consensus 1219 r~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~EA~~flP~Lv~K~Gd~ke~vR~~vr~i~~~~~~vyp~skv---f~~ 1295 (1974)
-|.+++. --.||-+++..++- +.-.|++|++.|+..+.+..+.=+..+.-..|.-+---++.+... | .-+ ...
T Consensus 33 ~fn~~~~-~~~kc~~~l~kll~-l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~iLv~Ns 108 (355)
T 3tjz_B 33 VFNETPI-NPRKCAHILTKILY-LINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVIIVTSS 108 (355)
T ss_dssp GTTSSSC-CHHHHHHHHHHHHH-HHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGGGGHHH
T ss_pred HhcCCCC-cHHHHHHHHHHHHH-HHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHH
Confidence 4555522 22355556665554 445668999999999999888777777777888777777766665 3 223 335
Q ss_pred HHhhhccCChhhHhHHHHHHHHHHHhhcCccccccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhcc
Q 000166 1296 ILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1974)
Q Consensus 1296 l~~glksKN~r~R~EcL~el~~li~~~G~~v~~~~Ka-l~~iA~~i~drD~~VR~AALn~l~~~Y~~~Gd~v~k~vg~ 1372 (1974)
|+.=+.++|.=.|.-.|.-|+++.+.- | ... .+.|.+++.|+||.||++|+-|...+|....|-+.+++..
T Consensus 109 l~kDl~~~N~~iR~lALRtL~~I~~~~-m-----~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~ 180 (355)
T 3tjz_B 109 LTKDMTGKEDSYRGPAVRALCQITDST-M-----LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE 180 (355)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCTT-T-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHH
T ss_pred HHhhcCCCcHhHHHHHHHHHhcCCCHH-H-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 566789999999999999999974211 1 223 4889999999999999999999887777777766554443
No 92
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=89.63 E-value=35 Score=44.18 Aligned_cols=370 Identities=11% Similarity=0.067 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch--hhhccchhhccc--cchhhhHHHHHHHHHHHh
Q 000166 637 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEA 712 (1974)
Q Consensus 637 ~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~~--~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~ 712 (1974)
.....||++|. ..|..++......|..++... .-.+..+ .-.|+.+|+-|. +..++..|..+|..++-.
T Consensus 48 ~~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 48 PELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 34666777763 345677777777787776421 1112222 124577776554 457888888888888742
Q ss_pred ---hchHhH-----HHHHHHhhhhcCChhhHHHHHHHHHHHH--HHhccCcc--chHhHHHHHh--hhcC----------
Q 000166 713 ---VGPGFI-----FERLYKIMKDHKNPKVLSEGILWMVSAV--EDFGVSHL--KLKDLIDFCK--DTGL---------- 768 (1974)
Q Consensus 713 ---~~p~~V-----~~~l~~~~~~~KnPKv~ae~l~wl~~ai--~eFG~~~l--~~K~lI~~~k--~~~L---------- 768 (1974)
..-..| +..++..+....++.++..+...|..+- .+.-..++ -+..|+..+. ..|.
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 111222 3456666555566766655443322221 11000000 1334555431 1111
Q ss_pred -CCccHHHHHHHHHHHHHHHhhhCchhHhhh---hcchHHHHHHHHHHHhcCCCCCCCC--CccccccccCcCCCCCCCC
Q 000166 769 -QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVV--PKKTVRASESTSSVSSGGS 842 (1974)
Q Consensus 769 -~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l---~dlkpall~~Ie~EF~K~~~~~~p~--p~R~~r~~~~~~~~~~~~~ 842 (1974)
.+.++.|+..|..+|..|-.. ++..+..+ +.+-++|+..|....++........ -....|.=.. ...
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~------~~~ 273 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY------QVH 273 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT------THH
T ss_pred cccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc------ccc
Confidence 234689999999888877431 22223322 4566788888876644431100000 0000000000 000
Q ss_pred CCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCcc-----chHHHHhhhccc-hhHhHHHHHH
Q 000166 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-----ELFGGLRGRLYD-SNKNLVMATL 916 (1974)
Q Consensus 843 d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~g-----eL~~aLk~Rl~D-sNk~lv~~al 916 (1974)
...|..+ . +.....+ +.. .+. --++.++. +.++.|-.-|.+ .|..+...|+
T Consensus 274 ~e~~~~~---~----~~~~~~~----------~~~-~~~-----~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 274 REIPQAE---R----YQEAAPN----------VAN-NTG-----TSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp HHSTTCC---C----------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccccchh---h----hhhhccc----------ccc-ccc-----ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 0000000 0 0000000 000 000 11223322 223444455543 4788888999
Q ss_pred HHHHHHHHhcChh---HHhhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhh-----HHHHHHHhcccC-
Q 000166 917 ITLGAVASAMGPA---VEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV-----PYVTTALTDAKL- 985 (1974)
Q Consensus 917 ~ii~~lA~amG~~---~~k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~-----~~i~~~L~~~~~- 985 (1974)
.+|..|+.+-++. +...+ ...+|.++..|......|+.+|..+|-..........++ +.+...|.++..
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCS
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccc
Confidence 9999998765432 22232 245899999999999999999999999887765554444 344444544321
Q ss_pred -----CcchHHHHHHHHHHHhccCCCC-c--chhhhhhhHhhhccCC--ChHHHHHHHHHHHHHHHhc
Q 000166 986 -----GAEGRKDLFDWLSKQLTGLSGF-P--DAAHLLKPASIAMTDK--SSDVRKAAEACIVEILRAG 1043 (1974)
Q Consensus 986 -----~p~~R~e~l~wL~~~l~~~~~~-~--~~~~~~~p~~~~L~Dr--~~dVRkaA~~~L~~~m~~~ 1043 (1974)
+.+....++.-|..-....... . .....+.+++..|.++ .+.++++|..+|-.++.+-
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 1222333333333222221111 1 1133466788888876 8899999999987776543
No 93
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=89.21 E-value=2 Score=49.02 Aligned_cols=109 Identities=17% Similarity=0.317 Sum_probs=78.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000166 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1974)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1974)
+.+.||-.=.| |=.+|+ . ++.+--|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 21 ~~~~dw~~ile----icD~I~---~--~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWESILQ----ICDLIR---Q--GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHHHHHH----HHHHHH---T--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHHHHHH----HHHHHh---C--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 45678975333 333332 1 234447999999999999999999999999999999999998764 555666
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000166 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1974)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1974)
.+...++. ....|++-+++.+..|.....-+.=++.|.+.
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 132 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDT 132 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 66555543 23579999999999999887544434444443
No 94
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=88.99 E-value=6.7 Score=47.66 Aligned_cols=188 Identities=15% Similarity=0.145 Sum_probs=123.8
Q ss_pred CCccccCCcccccCCCCchhhhhhhccCChHHHHHHHHHHHHhh-hcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHH
Q 000166 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQA 348 (1974)
Q Consensus 270 iDp~dl~~pvdIl~klpk~~f~~~l~s~KWkeRkEALe~L~~L~-~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~ 348 (1974)
..||.-.|...|+.... .|.+-= ..=+-+++++..+.-+. .-..+..-.-..++-.+-|++.-.|..+-.+.-=.
T Consensus 16 ~~p~~~~~k~~v~qe~r--~fn~~~--~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLy 91 (355)
T 3tjz_B 16 SNPFQHLEKSAVLQEAR--VFNETP--INPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLT 91 (355)
T ss_dssp ----CCCCHHHHHHHGG--GTTSSS--CCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHH--HhcCCC--CcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 35665556544543321 232210 12233467888876643 22222222345677777788876665555554444
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000166 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1974)
Q Consensus 349 i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1974)
+..+++- ..-+-++.+.+..-+.++.+-+|..+..+|-.+... .-++++...+..++.|++|-||..++.-..
T Consensus 92 l~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 92 IKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVSSL 164 (355)
T ss_dssp HHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5555554 344669999999999999999999888888777543 346777788889999999999999999888
Q ss_pred HHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 429 r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+.+...+ .+++.++..+..+++|+++-|--.|..+|-.+.
T Consensus 165 kL~~~~p-----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 165 HLLKCSF-----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp HHTTTCH-----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhccCH-----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 8876542 224678999999999999999865555554443
No 95
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=87.93 E-value=4.8 Score=50.63 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=122.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhhc--CCCCC--CChhHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHH---hcccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAST--KRIAP--GDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARG---LRTHF 360 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~~--pKi~~--~dy~dL~~~Lkk~l-~DsNv~vv~~A~~~i~~LA~g---Lr~~F 360 (1974)
-+..-|.+..=.-|..|.-.|..|... +.... .+. ..+..|-.+| ...+..+...|+.+|..|+.+ .+..|
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 366666666666777788787777532 11100 111 2344555554 455778889999999999983 33334
Q ss_pred ccchhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHHh--cCCC-hh-----hhHHHHHHHhhcCCchhHHHHHHHHH
Q 000166 361 SGSSRFLLPVLLEKLKEKKPT----VAESLTQTLQAMHKA--GCLN-LV-----DVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1974)
Q Consensus 361 ~~y~~~~l~~lLeklKEKK~~----V~eA~~~aLda~~~~--~~~~-l~-----~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1974)
.. ....+|+|++-+...+.. |++.+..+|-.+..+ ++.. -. ..++.+...|.+.++.++.++..-|.
T Consensus 326 ~~-~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 326 CA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HH-STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HH-hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 21 256899999999887764 888888888877652 1100 11 23566778889999999999888777
Q ss_pred HHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000166 429 FCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 429 r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1974)
.+-.. .......+. ...+|.++.+|...++.+|+.|+.+|..|...
T Consensus 405 nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 405 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 66532 222222222 34789999999999999999999999988754
No 96
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=87.87 E-value=6 Score=48.01 Aligned_cols=171 Identities=11% Similarity=0.072 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhhhcCC-CCC--CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHh
Q 000166 301 ERKDAVAELTKLASTKR-IAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKL 375 (1974)
Q Consensus 301 eRkEALe~L~~L~~~pK-i~~--~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLekl 375 (1974)
-|.+|...|..|+.... ... ..++..+..|-.+|...|..+...|+.+|..|+.+=....... -...+|+|++-+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL 179 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH
Confidence 46677777777763221 111 1245677888888887788899999999999987511111112 135689999975
Q ss_pred -ccCCHHHHHHHHHHHHHHHHhcCCC----h---hhhHHHHHHHhhcCCch----hHHHHHHHHHHHHhh---CChhHHh
Q 000166 376 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVPL----VRSLTLNWVTFCIET---SSKAAVL 440 (1974)
Q Consensus 376 -KEKK~~V~eA~~~aLda~~~~~~~~----l---~~~~e~i~~al~~KnP~----vk~etl~~L~r~l~~---~~~~~~~ 440 (1974)
+.....+++.+..||-.+... |.. + ...++.+...|.+..+. ++.++... -+.+.. .......
T Consensus 180 ~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~a-L~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 180 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI-LRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHH-HHHHHHHHTTCHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHH-HHHHHhhccCCHHHHH
Confidence 556788888888888777642 211 1 13456666777777653 66665543 344443 1222211
Q ss_pred Hhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 441 ~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
.+. ...+|.++.+|.+.+.+|++.|+.+|..+.
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 222 237899999999999999999999988775
No 97
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=87.72 E-value=0.64 Score=53.71 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=105.3
Q ss_pred HHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcch
Q 000166 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (1974)
Q Consensus 723 ~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlk 802 (1974)
+..+..+.+|.|+..+...+ + ...+..+ +.+.|+.||..+..-|. .+.|..++.|..
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l------------~----~~~l~~L-~~D~~~~VR~~aA~~L~------~~~L~~ll~D~d 111 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS------------P----VEALTPL-IRDSDEVVRRAVAYRLP------REQLSALMFDED 111 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------C----GGGGGGG-TTCSSHHHHHHHHTTSC------SGGGGGTTTCSC
T ss_pred HHHHhcCCCHHHHHHHHHhC------------C----HHHHHHH-ccCcCHHHHHHHHHHCC------HHHHHHHHcCCC
Confidence 44445788999998877642 1 1235556 89999999999886321 233444444433
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHH-HHhhcCCCChHHHHHHHHHHHHHH
Q 000166 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPT-LVKSLESPDWKVRLESIEAVNKIL 881 (1974)
Q Consensus 803 pall~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~-l~~~l~d~~WK~RkEaLe~v~~il 881 (1974)
+......=.. ++.+ +..-++|++|.+|.++...+
T Consensus 112 ~~VR~~aA~~-----------------------------------------l~~~~L~~L~~D~d~~VR~~aA~~l---- 146 (244)
T 1lrv_A 112 REVRITVADR-----------------------------------------LPLEQLEQMAADRDYLVRAYVVQRI---- 146 (244)
T ss_dssp HHHHHHHHHH-----------------------------------------SCTGGGGGGTTCSSHHHHHHHHHHS----
T ss_pred HHHHHHHHHh-----------------------------------------CCHHHHHHHHcCCCHHHHHHHHHhc----
Confidence 3322221111 1111 22336788888888877631
Q ss_pred HHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHH
Q 000166 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (1974)
Q Consensus 882 ~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~ald 961 (1974)
. .+ .|..-++|.|..|-..++.- ++. +-+...++|....||.+++..+
T Consensus 147 -------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~l- 194 (244)
T 1lrv_A 147 -------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASRL- 194 (244)
T ss_dssp -------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHHC-
T ss_pred -------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHhC-
Confidence 1 12 23344578887777666542 221 2233556888888888888763
Q ss_pred HHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhhHhhhccCCChHHHHHHHHHHH
Q 000166 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1974)
Q Consensus 962 a~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1974)
+. +.+...+.++ +++.|..+..-+ . .+.+..|.|.+..||.+|.+.|+
T Consensus 195 ------~~----~~L~~Ll~D~--d~~VR~~aa~~l----~------------~~~L~~L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 ------RG----DDLLELLHDP--DWTVRLAAVEHA----S------------LEALRELDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ------CG----GGGGGGGGCS--SHHHHHHHHHHS----C------------HHHHHHCCCCCHHHHHHHHCCC-
T ss_pred ------CH----HHHHHHHcCC--CHHHHHHHHHcC----C------------HHHHHHccCCCHHHHHHHHHHhC
Confidence 21 2233334544 466777666542 1 24444468888888888876554
No 98
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=87.38 E-value=24 Score=40.99 Aligned_cols=127 Identities=12% Similarity=0.150 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC
Q 000166 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK 379 (1974)
.+|.+.|.++..++-+. .+.=|.+++..+-....|++..|-...+.-|+..+ +++ ..++..+++.+..-+.|.-
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~---~~k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC---KVK-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH---HHC-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHcCCC
Confidence 69999999999865322 23458899999988877999998888888887776 322 2478889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cCCC------hh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 380 PTVAESLTQTLQAMHKA----GCLN------LV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 380 ~~V~eA~~~aLda~~~~----~~~~------l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
+.|...+..|...++.. -|.+ .+ .+-+.|+.-+.+.|..+|..+++|+.+++-
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 99999888888877653 1111 12 233556777889999999999999999984
No 99
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.82 E-value=2 Score=45.79 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=74.9
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+.. . +..=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+-++..|
T Consensus 14 l~~~dw~~~leicD~I~~---~----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL 86 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNT---D----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 86 (148)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc---C----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 445777654444444322 1 11235889999999999999999999999999999999999766 47788888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
...++.| -..|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 87 IKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8777764 568999999999999875
No 100
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.45 E-value=2.7 Score=44.93 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=74.6
Q ss_pred hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 293 ~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
.+.+.+|.-=.|.-|.+ -+ .+..=.+.+++|+++|...|.+++..|+..++.+.+-=|+.|... .+-++..
T Consensus 23 ~l~~~dw~~ileicD~I---~~----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~e 95 (149)
T 3g2s_A 23 LNKELDWASINGFCEQL---NE----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNE 95 (149)
T ss_dssp TCSSCCHHHHHHHHHHG---GG----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHH
T ss_pred CCCCcCHHHHHHHHHHH---HC----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH
Confidence 34567886443333332 11 122345899999999999999999999999999999999999765 5677888
Q ss_pred HHHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 371 LLEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 lLeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
|...+++| -..|++-+.+.+..|...
T Consensus 96 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 96 LIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 88888764 568999999999999875
No 101
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.44 E-value=1.7 Score=45.84 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=73.3
Q ss_pred hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccch--hhhHHH
Q 000166 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPV 370 (1974)
Q Consensus 293 ~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~--~~~l~~ 370 (1974)
.+.+.+|.-=.|.-|.+ . -.+..=.+.+++|+|+|...|.+++..|+..++.+.+-=|+.|...+ +-++..
T Consensus 17 ~l~~~dw~~ileicD~I----~---~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~e 89 (140)
T 3ldz_A 17 MNTAEDWGLILDICDKV----G---QSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE 89 (140)
T ss_dssp TSSSCCHHHHHHHHHHH----T---TSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHH
T ss_pred CCCCcCHHHHHHHHHHH----H---CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH
Confidence 35667886433333332 1 12233468999999999999999999999999999999999997553 667777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHh
Q 000166 371 LLEKLKEKKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 lLeklKEKK~~V~eA~~~aLda~~~~ 396 (1974)
|...++..-+.|++-+.+.+.+|...
T Consensus 90 l~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 90 VSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 76666667788999999999999864
No 102
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=85.61 E-value=7.8 Score=48.69 Aligned_cols=170 Identities=11% Similarity=0.086 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhhcCCCCC---CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHh-
Q 000166 302 RKDAVAELTKLASTKRIAP---GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKL- 375 (1974)
Q Consensus 302 RkEALe~L~~L~~~pKi~~---~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~lLekl- 375 (1974)
+.+|...|..|+....-.. ..++..+..|-.+|...|..+...|+.+|..|+.+-....... -...+|+|++-+
T Consensus 217 ~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl 296 (458)
T 3nmz_A 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 296 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh
Confidence 6677777777764221000 1245667888888887788899999999999986411111112 135689999975
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCC----h---hhhHHHHHHHhhcCCch----hHHHHHHHHHHHHhh---CChhHHhH
Q 000166 376 KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVPL----VRSLTLNWVTFCIET---SSKAAVLK 441 (1974)
Q Consensus 376 KEKK~~V~eA~~~aLda~~~~~~~~----l---~~~~e~i~~al~~KnP~----vk~etl~~L~r~l~~---~~~~~~~~ 441 (1974)
......+++.+..||-.+... |.. + ...++.+...|.+..+. ++.++...| +.+.. ........
T Consensus 297 ~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL-~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 297 EVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL-RNVSSLIATNEDHRQI 374 (458)
T ss_dssp TCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHH-HHHHhcccCCHHHHHH
Confidence 446788888888888877653 211 1 12455666777776653 676655443 44443 22222222
Q ss_pred hh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000166 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 442 ~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1974)
+. ...+|.++.+|.+.+.+|++.|+.+|..+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22 247899999999999999999999998875
No 103
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.55 E-value=2.1 Score=46.78 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=74.9
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+.. . +..-.+.+++|+++|...|.+|+..|+.+++.+.+-=|+.|... .+-++..|
T Consensus 26 l~~~Dw~~ileicD~I~~---~----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 26 NRQEDWEYIIGFCDQINK---E----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc---C----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 456788654444443322 1 22356899999999999999999999999999999999999865 45678888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKEK------K~~V~eA~~~aLda~~~~ 396 (1974)
...++.| -..|++-+.+.+..|...
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8877654 379999999999999875
No 104
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=85.53 E-value=24 Score=43.34 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC
Q 000166 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK 379 (1974)
.+|.+.|.++.+|+=+. .|.-|.+++..|-....|.|+.|-.-.+..|+..++. . ..++..+++.+..-+.|.-
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999964221 2345778888888888899999999999999888863 2 2457788888888889999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC-----------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000166 380 PTVAESLTQTLQAMHKA----GC--LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1974)
Q Consensus 380 ~~V~eA~~~aLda~~~~----~~--~~-----------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1974)
++|+..+..|...++.. -| -+ +..+-+.|+..+.+.|..||..+++|+.+++-
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99999888888877632 01 11 22334567777889999999999999999984
No 105
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=84.73 E-value=1.5e+02 Score=41.62 Aligned_cols=225 Identities=16% Similarity=0.164 Sum_probs=129.5
Q ss_pred hhhHHHHHHHHHHHhh---chHhHHHHHHHhhhh----------------------cCChh-hHHHHHHH-HHHHHHHh-
Q 000166 698 TRAHAMKCLTTFSEAV---GPGFIFERLYKIMKD----------------------HKNPK-VLSEGILW-MVSAVEDF- 749 (1974)
Q Consensus 698 ~r~~a~e~L~~~aE~~---~p~~V~~~l~~~~~~----------------------~KnPK-v~ae~l~w-l~~ai~eF- 749 (1974)
.|....+++..+|... +..++...+...+.. ..+|. ...|+... +..+++.+
T Consensus 439 ~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~ 518 (1204)
T 3a6p_A 439 SRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMF 518 (1204)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888999888765 666666666554332 01121 12233222 22222322
Q ss_pred --cc-Cccc---hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000166 750 --GV-SHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1974)
Q Consensus 750 --G~-~~l~---~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~~~~p~ 823 (1974)
.- ..++ ...++..+.. +...+|.+|...+.+++++..|+.. -+.-+...|+.=|..+.+. ++.
T Consensus 519 ~~~e~~~l~~~~~~~Ll~~ll~--~~~~~p~l~~~~i~~l~~l~~~~~~--------~p~~L~~vL~~ll~~l~~~-~~~ 587 (1204)
T 3a6p_A 519 RTLNREEIPVNDGIELLQMVLN--FDTKDPLILSCVLTNVSALFPFVTY--------RPEFLPQVFSKLFSSVTFE-TVE 587 (1204)
T ss_dssp HHSCTTCCCHHHHHHHHHHHHH--CCCSCHHHHHHHHHHHHHHGGGGGT--------CGGGHHHHHHHHHHHHHCC-TTC
T ss_pred cccccccccHHHHHHHHHHHHh--CCCCChHHHHHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHhhccC-Ccc
Confidence 10 1222 2445555432 3457999999999999999988752 1222333334344433221 111
Q ss_pred CccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh-
Q 000166 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG- 902 (1974)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~- 902 (1974)
..+.. + ++.+=.+|..|-..+..|+.++...+-|-. ..|...+..
T Consensus 588 ~~~~~------------------~---------------~~~~k~vr~~a~~al~~L~~~~~~~L~p~~-~~i~~~~~~~ 633 (1204)
T 3a6p_A 588 ESKAP------------------R---------------TRAVRNVRRHACSSIIKMCRDYPQLVLPNF-DMLYNHVKQL 633 (1204)
T ss_dssp STTSC------------------C---------------CHHHHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHH
T ss_pred ccccc------------------c---------------cHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHH
Confidence 11110 0 001224688888899999988756666653 666665544
Q ss_pred ----h-ccchhHhHHHHHHHHHHHHHHhcChhH--HhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhh
Q 000166 903 ----R-LYDSNKNLVMATLITLGAVASAMGPAV--EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973 (1974)
Q Consensus 903 ----R-l~DsNk~lv~~al~ii~~lA~amG~~~--~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~ 973 (1974)
. +.+.++.....|+-++ |..+++.- ..|...+++++++.+.+.. ++. +......++..+|++..-
T Consensus 634 l~~~~~l~~~e~~~L~eal~~i---a~~~~~~~~~~~~l~~ll~P~~~~w~~~~--~~~-~~s~~~~f~~~~G~~~~~ 705 (1204)
T 3a6p_A 634 LSNELLLTQMEKCALMEALVLI---SNQFKNYERQKVFLEELMAPVASIWLSQD--MHR-VLSDVDAFIAYVGTDQKS 705 (1204)
T ss_dssp HHSTTTSCHHHHHHHHHHHHHH---HGGGCCHHHHHHHHHHHHHHHHHHHSCHH--HHH-HHHCHHHHHHHHTSSCC-
T ss_pred HhCcccccHHHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHHccHH--HHH-hhcCHHHHHHHhCCCCCc
Confidence 4 7788888888887665 65566532 3467889999999997533 444 455556777778877653
No 106
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.62 E-value=3.8 Score=44.44 Aligned_cols=96 Identities=18% Similarity=0.237 Sum_probs=73.4
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccch--hhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~--~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+.. . +..=.+.+++|+++|...|.+++..|+..++.+.+--|+.|...+ +-++..|
T Consensus 28 ~~~~Dw~~~leicD~I~~---~----~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el 100 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGS---T----PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV 100 (163)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC---C----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 566788765544444322 1 223468999999999999999999999999999999999998553 4477777
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHHHHh
Q 000166 372 LEKLKE-KKPTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 372 LeklKE-KK~~V~eA~~~aLda~~~~ 396 (1974)
...++. .-+.|++-+.+.+..|...
T Consensus 101 ~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 101 RAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 666653 2368999999999999875
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=83.58 E-value=2.3 Score=56.07 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=67.2
Q ss_pred hhhhhccCChHHHHHHHHHHHHhhhcCCCCC-CChhHHHH-HHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc--hh
Q 000166 290 FWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCR-TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SR 365 (1974)
Q Consensus 290 f~~~l~s~KWkeRkEALe~L~~L~~~pKi~~-~dy~dL~~-~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~ 365 (1974)
+.++|.|+...+|..|+..|..|+..+.-.. -.+..++. .|..++.|+|..|+..|+.++..|+..-|.++..| ..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 6788999999999999999999886543222 12334454 56788899999999999999999998877776554 45
Q ss_pred hhHHHHHHHhc
Q 000166 366 FLLPVLLEKLK 376 (1974)
Q Consensus 366 ~~l~~lLeklK 376 (1974)
.++++|+.-|+
T Consensus 119 ~il~~L~~~l~ 129 (684)
T 4gmo_A 119 DVLTAIEHAAK 129 (684)
T ss_dssp THHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 57888777654
No 108
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=80.06 E-value=1.7e+02 Score=38.99 Aligned_cols=301 Identities=11% Similarity=0.100 Sum_probs=160.8
Q ss_pred hHhHHHHHHHhhhh-cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch
Q 000166 715 PGFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (1974)
Q Consensus 715 p~~V~~~l~~~~~~-~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~ 793 (1974)
-.||.++.++.+.. .|+..++.-++..|+.+-..-+.....+..+++.+++. |.+.+...|.-|+..| .|.-+.+.
T Consensus 290 R~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~-L~~~~~~~~~~AvEgL--aYLSl~~~ 366 (778)
T 3opb_A 290 RTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA-ISRRIVPKVEMSVEAL--AYLSLKAS 366 (778)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH-TTTCCHHHHHHHHHHH--HHHTTSSH
T ss_pred HHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH-HhcCCccHHHHHHHHH--HHHhCCHH
Confidence 45666555554432 46778888888888877655455667888899999997 9988777799998877 57788999
Q ss_pred hHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccc--------ccccCcCCCCCCCCCCCCccccccCCcHHHHhhcCCC
Q 000166 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV--------RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP 865 (1974)
Q Consensus 794 l~~~l~dlkpall~~Ie~EF~K~~~~~~p~p~R~~--------r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l~d~ 865 (1974)
+|..|.+-...+...++-- +.+...+ . .-++ ...+...........+.+=.+-+ .|. ..-.|.
T Consensus 367 VKe~L~~d~~~L~~Lv~ll--k~~~d~s-~-~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~--~p~---~~~~d~ 437 (778)
T 3opb_A 367 VKIMIRSNESFTEILLTMI--KSQKMTH-C-LYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXX--XPA---ADKVGA 437 (778)
T ss_dssp HHHHHHHCHHHHHHHHHHH--TTTCCTT-H-HHHHHHHHHHTTCCCCCCCCCCC-----------------------CCT
T ss_pred HHHHHHhCHHHHHHHHHHH--hCCCCch-H-HHHHHHHHHHhcCCCcccchhhhhhhhhhhhcccc--Ccc---cCcccc
Confidence 9998854444333332211 1111000 0 0000 00000000000000000000000 010 001111
Q ss_pred ChHHHHHHHHH-HHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhHHHH
Q 000166 866 DWKVRLESIEA-VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSDIL 942 (1974)
Q Consensus 866 ~WK~RkEaLe~-v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~~il 942 (1974)
.+ ...+.+.+ ..+++- . ...+..|...++..+.++..+|+.++..|+.- +..+.. ..+.+++++
T Consensus 438 ~~-~~~~~v~~~~~~~l~-------e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL 504 (778)
T 3opb_A 438 EK-AAKEDILLFNEKYIL-------R---TELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIIL 504 (778)
T ss_dssp HH-HHHHHHHHHHHHHTT-------T---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHH
T ss_pred cc-cchHHHHHHHHHHHH-------H---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHH
Confidence 12 22222222 222222 2 23788888888888899999999999999744 444433 235789999
Q ss_pred HHhccCchh---HHHHHHHHHHHHHHhccch---------hhhHHHHHHHhc-ccCC----------c-chHHHHHHHHH
Q 000166 943 KCLGDNKKH---MRECTLTVLDAWLAAVHLD---------KMVPYVTTALTD-AKLG----------A-EGRKDLFDWLS 998 (1974)
Q Consensus 943 ~~l~D~K~~---vR~aa~~alda~~~~~gl~---------~~~~~i~~~L~~-~~~~----------p-~~R~e~l~wL~ 998 (1974)
..|.+.... +|..|..||-...-++.-. ..++.+..-|.. +... + -.+.+.+.=|.
T Consensus 505 ~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT 584 (778)
T 3opb_A 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT 584 (778)
T ss_dssp HHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence 999888655 8999999998887655322 223344444431 1100 0 11455554443
Q ss_pred HHhccCCCC--cc-----hh--hhhhhHhhhccCCChHHHHHHHHHHHHHHH
Q 000166 999 KQLTGLSGF--PD-----AA--HLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1974)
Q Consensus 999 ~~l~~~~~~--~~-----~~--~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1974)
.|...+.. .+ .. ..+..+...|.+-+..||++|.+++--++.
T Consensus 585 -NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 585 -NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp -HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred -HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 33333311 11 11 123346666777788899988888877775
No 109
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=79.29 E-value=16 Score=48.62 Aligned_cols=171 Identities=12% Similarity=0.128 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhh--hcCCCCCCCh--hHHHHHHHHHhc-chhH-------------HHHHHHHHHHHHHHHH-------
Q 000166 301 ERKDAVAELTKLA--STKRIAPGDF--TEVCRTLKKLIT-DVNI-------------AVAVEAIQAIGNLARG------- 355 (1974)
Q Consensus 301 eRkEALe~L~~L~--~~pKi~~~dy--~dL~~~Lkk~l~-DsNv-------------~vv~~A~~~i~~LA~g------- 355 (1974)
-|..|...|..|+ .+|++.-+.| .+.++-|..+|. |.+. .-...|+.+|+.||..
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 4788888888754 3455432112 267888888887 4443 2367899999999975
Q ss_pred hccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh-hhh-----------HHHHHHHhhcCCchhHHHH
Q 000166 356 LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-VDV-----------VEDVKTSVKNKVPLVRSLT 423 (1974)
Q Consensus 356 Lr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l-~~~-----------~e~i~~al~~KnP~vk~et 423 (1974)
+|...-.+ ...+|.|.+-+.+-+..|+.|+.+++-.++.. ...+ .++ ++-+...+...++.+|..+
T Consensus 597 ~r~~Ii~~-~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AA 674 (778)
T 3opb_A 597 VCKHIVST-KVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAV 674 (778)
T ss_dssp HHHHHHHS-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHH
Confidence 34333221 24789999999999999999999999999864 2222 122 3456677889999999999
Q ss_pred HHHHHHHHhhCChhHHhHhh--hhhHHHHHhhhCC--CCHHHHHHHHHHHHHHHH
Q 000166 424 LNWVTFCIETSSKAAVLKVH--KDYVPICMECLND--GTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~--k~~~~~l~k~l~D--s~~~VR~aA~~~l~~lmk 474 (1974)
...|+.+-...+ .....++ ...+..++..+.| .++++|..+..++--+..
T Consensus 675 agALAnLts~~~-~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 675 AAIFANIATTIP-LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHCH-HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCh-HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 977776543332 2112222 2477888999999 899999999999999886
No 110
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=78.65 E-value=13 Score=46.47 Aligned_cols=178 Identities=11% Similarity=0.055 Sum_probs=108.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhhh-cCCCC-C-CChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH---hcccccc
Q 000166 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIA-P-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSG 362 (1974)
Q Consensus 289 ~f~~~l~s~KWkeRkEALe~L~~L~~-~pKi~-~-~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~g---Lr~~F~~ 362 (1974)
.+...|.+..+..|.+|...|..++. ++... . .+. ..+..|-+.|.+.|..+...|+.++..|+.+ .+..+.
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~- 83 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR- 83 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH-
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 57788899999999999999999874 22221 0 111 2356666777778889999999999999974 112121
Q ss_pred chhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCChh-----hhHHHHHHHhh--------cCCchhHH-------
Q 000166 363 SSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLV-----DVVEDVKTSVK--------NKVPLVRS------- 421 (1974)
Q Consensus 363 y~~~~l~~lLeklK-EKK~~V~eA~~~aLda~~~~~~~~l~-----~~~e~i~~al~--------~KnP~vk~------- 421 (1974)
....+|++++-++ .....+++.+..||-.++.. -... ..++.+...|. +.++.+|.
T Consensus 84 -~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 84 -RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp -HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred -HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2367999999999 77899999999999888753 2222 23344555552 22222221
Q ss_pred HHHHHHHHHHhhCChhHHhHhhh--hhHHHHHhhhCC------CCHHHHHHHHHHHHHH
Q 000166 422 LTLNWVTFCIETSSKAAVLKVHK--DYVPICMECLND------GTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 422 etl~~L~r~l~~~~~~~~~~~~k--~~~~~l~k~l~D------s~~~VR~aA~~~l~~l 472 (1974)
....|.-+.|... +.....+.. ..+|.++..|.+ .+..+.+.|..+|..+
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 1233444444433 222222232 567777777753 4555666666555544
No 111
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=78.13 E-value=3.6 Score=44.31 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=71.4
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y--~~~~l~~ 370 (1974)
+.+.+|.-=.|.-|.+.. . +..-.|.+++|+++|. ..|.+++..|+..++.+.+-=|+.|... .+-++..
T Consensus 29 l~~~Dw~~~leicD~I~~---~----~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e 101 (157)
T 1elk_A 29 LQSEDWALNMEICDIINE---T----EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVES 101 (157)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC---C----CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHH
Confidence 445678765544443321 1 2345689999999998 7899999999999999999999999865 3447776
Q ss_pred -HHHHhccCC---HHHHHHHHHHHHHHHHh
Q 000166 371 -LLEKLKEKK---PTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 371 -lLeklKEKK---~~V~eA~~~aLda~~~~ 396 (1974)
|+..+..|. ..|++-+.+.+..|...
T Consensus 102 ~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 102 VLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 555564332 37999999999999874
No 112
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.10 E-value=12 Score=50.70 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=26.9
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000166 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
.++..|...+.|++..||.+|..+||.++.--.+
T Consensus 647 ~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 647 SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 3456777888999999999999999988754433
No 113
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=78.00 E-value=2.3e+02 Score=39.31 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhcc-----------------CCHH------HHHHHHHHHHHHHH
Q 000166 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-----------------KKPT------VAESLTQTLQAMHK 395 (1974)
Q Consensus 339 v~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKE-----------------KK~~------V~eA~~~aLda~~~ 395 (1974)
+.-...-++|...+|.++|..|.+++..+++.|++..+= |-+. |+.++...+..+..
T Consensus 687 i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~ 766 (1073)
T 3gjx_A 687 VKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVS 766 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666677999999999999999999999999977542 3222 23344445555554
Q ss_pred hcCCChh----hhHHHHHH----HhhcCCchhHH-HHHHHHHHHHhhCCh---hHHhHhhhhhHHHHHhhhC---CCCHH
Q 000166 396 AGCLNLV----DVVEDVKT----SVKNKVPLVRS-LTLNWVTFCIETSSK---AAVLKVHKDYVPICMECLN---DGTPE 460 (1974)
Q Consensus 396 ~~~~~l~----~~~e~i~~----al~~KnP~vk~-etl~~L~r~l~~~~~---~~~~~~~k~~~~~l~k~l~---Ds~~~ 460 (1974)
. +.... .+++.+.+ --..-+|..|. +.+..++-++.+... +.+..++..+.-.-+..++ +..|+
T Consensus 767 ~-~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe 845 (1073)
T 3gjx_A 767 R-SNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPE 845 (1073)
T ss_dssp T-CSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHH
T ss_pred c-CCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcH
Confidence 3 22222 22233332 22344576664 666777766655332 2222333443333344454 67899
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000166 461 VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1974)
Q Consensus 461 VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1974)
.|..=+..+.++..+. +. .+=.+.+..-+.+.+++
T Consensus 846 ~r~~ff~ll~~~~~~~----f~-~l~~l~~~~~~~~i~~i 880 (1073)
T 3gjx_A 846 HRTNFFLLLQAVNSHC----FP-AFLAIPPAQFKLVLDSI 880 (1073)
T ss_dssp HHHHHHHHHHHHHHHC----GG-GTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hH-HHHcCCHHHHHHHHHHH
Confidence 9999999888887762 22 22346776656665554
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=76.24 E-value=14 Score=45.45 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCH
Q 000166 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1974)
Q Consensus 380 ~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~ 459 (1974)
..-++.+.++=+-++.....-|+++++.|+.+-.+.+..||.-...||...+... ..++..+++.+..+|+|.++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-----~el~~~~l~~L~~LL~d~d~ 114 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-----IELLLKLIANLNMLLRDENV 114 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCH
Confidence 3456666666665554323457899999999888999999999999999988643 22346678889999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000166 460 EVRDAAFSVLAAIAKS 475 (1974)
Q Consensus 460 ~VR~aA~~~l~~lmk~ 475 (1974)
.|-+.+..|.+.++++
T Consensus 115 ~V~K~~I~~~tslYpl 130 (386)
T 3o2t_A 115 NVVKKAILTMTQLYKV 130 (386)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999865
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=75.50 E-value=15 Score=42.54 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHH
Q 000166 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1974)
Q Consensus 381 ~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~ 460 (1974)
.-.+.+.++-+-++.....-++++++.|++.-.+.+..+|.....|+...+...+ .++..+++.+..+++|.++.
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-----~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-----ELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCCHH
Confidence 4455666666645443123467888999887777888999999999988885432 23466788999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000166 461 VRDAAFSVLAAIAKSV 476 (1974)
Q Consensus 461 VR~aA~~~l~~lmk~~ 476 (1974)
|-+.+..|.+.+++.+
T Consensus 106 V~K~~I~~~~~iY~~~ 121 (257)
T 3gs3_A 106 VIKRVIQACGSIYKNG 121 (257)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 116
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=74.75 E-value=13 Score=46.42 Aligned_cols=140 Identities=10% Similarity=0.058 Sum_probs=92.8
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHh---ccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh---
Q 000166 329 TLKKLITDVNIAVAVEAIQAIGNLARGL---RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--- 402 (1974)
Q Consensus 329 ~Lkk~l~DsNv~vv~~A~~~i~~LA~gL---r~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~--- 402 (1974)
.|-..|...|..+...|+.+|..|+.+= +..+ .....+|.|++-++...+.+++.+..||-.+... .....
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i--~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i 82 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQV--YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLET 82 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHH--HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHH--HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 3444555556778899999999998421 1112 1346799999999999999999999999888742 11111
Q ss_pred ---hhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhC-ChhHHhHhhhhhHHHHHhhh--------CCC--------CHHH
Q 000166 403 ---DVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECL--------NDG--------TPEV 461 (1974)
Q Consensus 403 ---~~~e~i~~al~-~KnP~vk~etl~~L~r~l~~~-~~~~~~~~~k~~~~~l~k~l--------~Ds--------~~~V 461 (1974)
..++.+...|. +.++.++.++..-|...-... .+. .+....+|.++.+| .+. +++|
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~---~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE---ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH---HHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH---HHHhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 22466778888 889999988876665444321 122 12347889999999 332 4556
Q ss_pred HHHHHHHHHHHHH
Q 000166 462 RDAAFSVLAAIAK 474 (1974)
Q Consensus 462 R~aA~~~l~~lmk 474 (1974)
+..|..+|..|..
T Consensus 160 ~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 160 FFNATGCLRNLSS 172 (457)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc
Confidence 6688877777654
No 117
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.99 E-value=12 Score=42.35 Aligned_cols=95 Identities=8% Similarity=0.072 Sum_probs=63.6
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccch--hhhHHHH
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~--~~~l~~l 371 (1974)
+.+.+|.-=.|.-|.+. . .+..=.|.+++|+++|...|.+++..|+..++.+.+.=|+.|...+ +-++..|
T Consensus 18 ~~~~dw~~~leicd~i~----~---~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l 90 (220)
T 1dvp_A 18 RLEPDWPSILLICDEIN----Q---KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF 90 (220)
T ss_dssp CSSCCHHHHHHHHHHHH----T---TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHHHHHHHHhhc----C---CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHH
Confidence 34578886544433332 1 2234568999999999999999999999999999999998886542 2244444
Q ss_pred HHHhccC-CHHHHHHHHHHHHHHHH
Q 000166 372 LEKLKEK-KPTVAESLTQTLQAMHK 395 (1974)
Q Consensus 372 LeklKEK-K~~V~eA~~~aLda~~~ 395 (1974)
...+++. -..|++-+.+.+..|..
T Consensus 91 ~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 91 SSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3333322 24566666666666654
No 118
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=72.97 E-value=34 Score=44.31 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=103.0
Q ss_pred HHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhcc---ccccch--hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Q 000166 325 EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT---HFSGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1974)
Q Consensus 325 dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~---~F~~y~--~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~ 398 (1974)
..++.|-.++. -.|..+...|+-+|..|+.|-.. .+...+ ...+|.|++-+......|+.++..||-.+...
T Consensus 308 ~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~-- 385 (584)
T 3l6x_A 308 EVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD-- 385 (584)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--
Confidence 45677777886 45888899999999999876321 122122 25599999999999999999999999999875
Q ss_pred CChhhh-----HHHHHHHhhcCC--------chhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCC--CHHHH
Q 000166 399 LNLVDV-----VEDVKTSVKNKV--------PLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG--TPEVR 462 (1974)
Q Consensus 399 ~~l~~~-----~e~i~~al~~Kn--------P~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds--~~~VR 462 (1974)
....++ +..+...|.+-+ ..+...++.-|...+... ......+. ...+|.++.++.++ .+.++
T Consensus 386 ~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~ 464 (584)
T 3l6x_A 386 ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRETQGIEKLVLINKSGNRSEKEV 464 (584)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHTCSSSCHHHH
T ss_pred hhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCCChHHH
Confidence 333333 345555565542 234445555554444332 22211222 34899999999886 89999
Q ss_pred HHHHHHHHHHHHHhChhHHHHHhh
Q 000166 463 DAAFSVLAAIAKSVGMRPLERSIE 486 (1974)
Q Consensus 463 ~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1974)
++|+.+|..+.. ++.+...+.
T Consensus 465 k~Aa~vL~nl~~---~~elr~~~k 485 (584)
T 3l6x_A 465 RAAALVLQTIWG---YKELRKPLE 485 (584)
T ss_dssp HHHHHHHHHHHT---SHHHHHHHH
T ss_pred HHHHHHHHHHHc---CHHHHHHHH
Confidence 999988887754 555544443
No 119
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=72.11 E-value=8.1 Score=44.51 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=83.3
Q ss_pred HhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchH
Q 000166 724 KIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803 (1974)
Q Consensus 724 ~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkp 803 (1974)
..+.+..++.|+..+..-+ . . +.+..+ +++.++.||.++..- ...+.+..++.|..+
T Consensus 104 ~~ll~D~d~~VR~~aA~~l-------~-----~----~~L~~L-~~D~d~~VR~~aA~~------l~~~~l~~l~~D~d~ 160 (244)
T 1lrv_A 104 SALMFDEDREVRITVADRL-------P-----L----EQLEQM-AADRDYLVRAYVVQR------IPPGRLFRFMRDEDR 160 (244)
T ss_dssp GGTTTCSCHHHHHHHHHHS-------C-----T----GGGGGG-TTCSSHHHHHHHHHH------SCGGGGGGTTTCSCH
T ss_pred HHHHcCCCHHHHHHHHHhC-------C-----H----HHHHHH-HcCCCHHHHHHHHHh------cCHHHHHHHHcCCCH
Confidence 3445677888887665521 1 1 235566 889999999988762 122334444455444
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHh-hcCCCChHHHHHHHHHHHHHHH
Q 000166 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK-SLESPDWKVRLESIEAVNKILE 882 (1974)
Q Consensus 804 all~~Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~-~l~d~~WK~RkEaLe~v~~il~ 882 (1974)
.....+=.. ++..++. -++|++|.+|.++.+.+
T Consensus 161 ~VR~~aa~~-----------------------------------------l~~~ll~~ll~D~d~~VR~aaa~~l----- 194 (244)
T 1lrv_A 161 QVRKLVAKR-----------------------------------------LPEESLGLMTQDPEPEVRRIVASRL----- 194 (244)
T ss_dssp HHHHHHHHH-----------------------------------------SCGGGGGGSTTCSSHHHHHHHHHHC-----
T ss_pred HHHHHHHHc-----------------------------------------CCHHHHHHHHcCCCHHHHHHHHHhC-----
Confidence 333222111 1223443 46999999999998753
Q ss_pred HcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHH
Q 000166 883 EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960 (1974)
Q Consensus 883 ~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~al 960 (1974)
+ .+ .|..-+.|.+-.|-..++. ++| ++.|..|.|....||.++.+.|
T Consensus 195 -~---------~~---~L~~Ll~D~d~~VR~~aa~-------~l~-----------~~~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -R---------GD---DLLELLHDPDWTVRLAAVE-------HAS-----------LEALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp -C---------GG---GGGGGGGCSSHHHHHHHHH-------HSC-----------HHHHHHCCCCCHHHHHHHHCCC
T ss_pred -C---------HH---HHHHHHcCCCHHHHHHHHH-------cCC-----------HHHHHHccCCCHHHHHHHHHHh
Confidence 1 12 3444478888877766544 344 2566778999999999987654
No 120
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=71.86 E-value=1.4e+02 Score=40.66 Aligned_cols=257 Identities=18% Similarity=0.127 Sum_probs=142.9
Q ss_pred ChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch--hHhhhhcchHHHHHH
Q 000166 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD--IKGFLADVKPALLSA 808 (1974)
Q Consensus 731 nPKv~ae~l~wl~~ai~eFG~~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~--l~~~l~dlkpall~~ 808 (1974)
++.++..++.-|+-+. .|.. =..+++.++.. |.+.++.+|..|.--||-+|.--|+. +...+ +.
T Consensus 450 ~~~ir~gAaLGLGla~--~GS~---~eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL--------~~ 515 (963)
T 4ady_A 450 VDVLLHGASLGIGLAA--MGSA---NIEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMF--------TY 515 (963)
T ss_dssp HHHHHHHHHHHHHHHS--TTCC---CHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------HH
T ss_pred cHHHHHHHHHHHHHHh--cCCC---CHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHH--------HH
Confidence 4677777665544432 2322 13566777776 77778889988988899988765532 22222 22
Q ss_pred HHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccccCCcHHHHhhc-CCCChHHHHHHHHHHHHHHHHcccC
Q 000166 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL-ESPDWKVRLESIEAVNKILEEANKR 887 (1974)
Q Consensus 809 Ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lpRvDIs~kit~~l~~~l-~d~~WK~RkEaLe~v~~il~~ankr 887 (1974)
+.+ . + ....| |. ...+ - |.-.+-+-+ .-+.+++.+ .+.+|-+|--|.-.+.=.. |
T Consensus 516 ~~e---~---~--~e~vr--R~-aalg-L---Gll~~g~~e----~~~~li~~L~~~~dp~vRygaa~alglAy--a--- 571 (963)
T 4ady_A 516 SQE---T---Q--HGNIT--RG-LAVG-L---ALINYGRQE----LADDLITKMLASDESLLRYGGAFTIALAY--A--- 571 (963)
T ss_dssp HHH---C---S--CHHHH--HH-HHHH-H---HHHTTTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHHT--T---
T ss_pred Hhc---c---C--cHHHH--HH-HHHH-H---HhhhCCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--c---
Confidence 111 0 0 00111 00 0000 0 000000001 123455554 4789999998876654211 1
Q ss_pred CCCCCccchHHHH-hhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhc-cCchhHHHHHHHHHHHHHH
Q 000166 888 IQPAGTGELFGGL-RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLA 965 (1974)
Q Consensus 888 I~p~~~geL~~aL-k~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~-D~K~~vR~aa~~alda~~~ 965 (1974)
..+. .+.++.| .-...|.+..|.+.|.--+|.|+ ||.+ -.++.+++.|. +..+.||-++.-||--+..
T Consensus 572 -GTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~------e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 572 -GTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDY------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp -TSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred -CCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 1111 2333323 33346777777777666555553 4432 23566666544 5779999999999988887
Q ss_pred hccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--CcchhhhhhhHhhhccCC--ChHHHHHHHHHHH
Q 000166 966 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDK--SSDVRKAAEACIV 1037 (1974)
Q Consensus 966 ~~gl~~~~~~i~~~L~~~~~~p~~R~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L~Dr--~~dVRkaA~~~L~ 1037 (1974)
.+|....++.+...+.++ +.+.|+.++-=|..-..+... .+-+..++.-+..-..|| ++.+|=.+.-+.|
T Consensus 642 Gn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 642 GKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp SSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 778777777555555443 578888888777666655443 234555666566666653 4556666555554
No 121
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=71.52 E-value=3.4e+02 Score=38.14 Aligned_cols=375 Identities=11% Similarity=0.030 Sum_probs=188.1
Q ss_pred cchhhccccchhhhHHHHHHHHHHHhhc-hH-------hH----HHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHhcc
Q 000166 687 LGISERVADIKTRAHAMKCLTTFSEAVG-PG-------FI----FERLYKIMKDHKN---PKVLSEGILWMVSAVEDFGV 751 (1974)
Q Consensus 687 ~~lveKlgD~K~r~~a~e~L~~~aE~~~-p~-------~V----~~~l~~~~~~~Kn---PKv~ae~l~wl~~ai~eFG~ 751 (1974)
+.++.-+.+.+++..|.+||..++.... ++ ++ +.+++..+..... ..--.+.+.-+++++..+|-
T Consensus 252 ~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~ 331 (1204)
T 3a6p_A 252 EILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN 331 (1204)
T ss_dssp HHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 3333445567788888888888776432 11 00 2244443211110 22234555566666666661
Q ss_pred -------------CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCC
Q 000166 752 -------------SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF 818 (1974)
Q Consensus 752 -------------~~l~~K~lI~~~k~~~L~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~Ie~EF~K~~~ 818 (1974)
..-.+..+++++-.+ +++.+-.|-..+..+-..+.++........+.+.-+.++..+-..+.|+.+
T Consensus 332 ~l~~l~~~~~~~~~~~~l~~~l~~lL~~-t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~y 410 (1204)
T 3a6p_A 332 QLCALLGADSDVETPSNFGKYLESFLAF-TTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGF 410 (1204)
T ss_dssp HHHHHHHTCSSCCCCTTHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhccccccChhHHHHHHHHHHHH-HhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 223467888888886 888888888888877766666653222233344445555555555788866
Q ss_pred CCCCC-CccccccccCcCCCCCCCC-------------CC------CCccccccCCcHHHHhh-----------------
Q 000166 819 EGTVV-PKKTVRASESTSSVSSGGS-------------DG------LPREDISGKFTPTLVKS----------------- 861 (1974)
Q Consensus 819 ~~~p~-p~R~~r~~~~~~~~~~~~~-------------d~------lpRvDIs~kit~~l~~~----------------- 861 (1974)
..... |+...- ..+. .+..+ |. +-+.+....+-+-+...
T Consensus 411 p~~~~~~~~~~~-~~D~---d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~ 486 (1204)
T 3a6p_A 411 PSKTDSPSCEYS-RFDF---DSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVG 486 (1204)
T ss_dssp SSCCSSTHHHHH-HHHC---SSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-------------
T ss_pred ccccCCcchhhh-hccc---CCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 21100 111000 0000 00000 00 00000110000111111
Q ss_pred --------cCCCChHHHHHHHHHHHHHHHHcccCC-CCCCccchHHHHhhhc---cchhHhHHHHHHHHHHHHHHhcChh
Q 000166 862 --------LESPDWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPA 929 (1974)
Q Consensus 862 --------l~d~~WK~RkEaLe~v~~il~~ankrI-~p~~~geL~~aLk~Rl---~DsNk~lv~~al~ii~~lA~amG~~ 929 (1974)
..+..|..+-..+-.++.++..-.+-. .+..-..+...|=.++ ...+..+...++.|++.+..-....
T Consensus 487 ~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~ 566 (1204)
T 3a6p_A 487 TGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR 566 (1204)
T ss_dssp ----CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC
T ss_pred cccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC
Confidence 113467665554444555554321111 1322112333333332 3456678889999999877655311
Q ss_pred HHhhhhhhhHHHHHHhcc------------CchhHHHHHHHHHHHHHHhcc--chhhhHHHH----HHHhccc-CCcchH
Q 000166 930 VEKSSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVH--LDKMVPYVT----TALTDAK-LGAEGR 990 (1974)
Q Consensus 930 ~~k~~k~l~~~il~~l~D------------~K~~vR~aa~~alda~~~~~g--l~~~~~~i~----~~L~~~~-~~p~~R 990 (1974)
-.|...++.-|+..|.| .-+.||.+|..++..+...++ |-+.++.|. ..+.... ....-+
T Consensus 567 -p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~ 645 (1204)
T 3a6p_A 567 -PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEK 645 (1204)
T ss_dssp -GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHH
T ss_pred -chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHH
Confidence 13445555566667666 345899999999999998884 444444433 4343333 333344
Q ss_pred HHHHHHHHHHhccC-CC---Ccc-hhhhhhhHhhhccCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhH--H--
Q 000166 991 KDLFDWLSKQLTGL-SG---FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL--A-- 1061 (1974)
Q Consensus 991 ~e~l~wL~~~l~~~-~~---~~~-~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~--~-- 1061 (1974)
-.+...+.- +.+. +. ... +..++.|++..++ +++++.+.... ..|+..+|-+.........++..+ .
T Consensus 646 ~~L~eal~~-ia~~~~~~~~~~~~l~~ll~P~~~~w~--~~~~~~~~s~~-~~f~~~~G~~~~~~~~~~~d~~~~~r~~l 721 (1204)
T 3a6p_A 646 CALMEALVL-ISNQFKNYERQKVFLEELMAPVASIWL--SQDMHRVLSDV-DAFIAYVGTDQKSCDPGLEDPCGLNRARM 721 (1204)
T ss_dssp HHHHHHHHH-HHGGGCCHHHHHHHHHHHHHHHHHHHS--CHHHHHHHHCH-HHHHHHHTSSCC--CTTCCTHHHHHHHHH
T ss_pred HHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHHHc--cHHHHHhhcCH-HHHHHHhCCCCCcccccccchhhhhHHHH
Confidence 444444432 1211 11 123 5667888888776 46677755544 678888887655444433333222 2
Q ss_pred -----HHHHHHHhcc
Q 000166 1062 -----LILERIKLNG 1071 (1974)
Q Consensus 1062 -----~i~~~l~k~~ 1071 (1974)
.+...+++.+
T Consensus 722 ~~~~~~l~~~l~r~~ 736 (1204)
T 3a6p_A 722 SFCVYSILGVVKRTC 736 (1204)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhc
Confidence 5667777743
No 122
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=66.85 E-value=48 Score=37.76 Aligned_cols=141 Identities=11% Similarity=0.005 Sum_probs=93.1
Q ss_pred HHHHHHHhc--chhHHHHHHHHHHHHHHHHHh---ccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh
Q 000166 327 CRTLKKLIT--DVNIAVAVEAIQAIGNLARGL---RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1974)
Q Consensus 327 ~~~Lkk~l~--DsNv~vv~~A~~~i~~LA~gL---r~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l 401 (1974)
+..|-..|. |.+..+...|+.++..|+.+= +..+. ....+|++++-|+...+.|++.+..||-.+.....-.=
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~--~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVN--QLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH--HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 344555666 443478888999999999763 22222 23567999999999999999999999999864200000
Q ss_pred h-----hhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhCC--hhHHhHhhhhhHHHHHhhhC-------C---------C
Q 000166 402 V-----DVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS--KAAVLKVHKDYVPICMECLN-------D---------G 457 (1974)
Q Consensus 402 ~-----~~~e~i~~al~-~KnP~vk~etl~~L~r~l~~~~--~~~~~~~~k~~~~~l~k~l~-------D---------s 457 (1974)
. .-++.+...|. ++.+.++.++..-|... .... +. .+.+..+|+++..+. | .
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL-S~~~~~k~---~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL-SSNDKLKN---LMITEALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSGGGHH---HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH-HcChhhHH---HHHhccHHHHHHHHhccccCCcccccccccccc
Confidence 1 13456777787 57889998876555543 2221 22 233556777776542 2 3
Q ss_pred CHHHHHHHHHHHHHHH
Q 000166 458 TPEVRDAAFSVLAAIA 473 (1974)
Q Consensus 458 ~~~VR~aA~~~l~~lm 473 (1974)
+++|+..|..||..+.
T Consensus 164 ~~~v~~na~~~L~nLs 179 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMS 179 (233)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7799999999987664
No 123
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=64.82 E-value=6.2 Score=42.29 Aligned_cols=97 Identities=13% Similarity=0.216 Sum_probs=68.8
Q ss_pred hhccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhccccccch--hhhHH
Q 000166 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLP 369 (1974)
Q Consensus 293 ~l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~-DsNv~vv~~A~~~i~~LA~gLr~~F~~y~--~~~l~ 369 (1974)
.+.+.+|.-=.|.-|.+. +. +..=-+.+++|+|+|. ..|.+++..|+..++.+.+-=|..|...+ +-++.
T Consensus 28 ~l~~~Dw~~ileicD~In---~~----~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~ 100 (152)
T 3rru_A 28 GVQTEDWGQFMHICDIIN---TT----QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVK 100 (152)
T ss_dssp SCCSCCHHHHHHHHHHHH---HS----TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHT
T ss_pred CCCCccHHHHHHHHHHHh---CC----CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHH
Confidence 456678874333333322 22 2234689999999998 46999999999999999999999998763 35565
Q ss_pred H-HHHHhccCC---HHHHHHHHHHHHHHHHh
Q 000166 370 V-LLEKLKEKK---PTVAESLTQTLQAMHKA 396 (1974)
Q Consensus 370 ~-lLeklKEKK---~~V~eA~~~aLda~~~~ 396 (1974)
. |...++++- ..|++-+.+.+..|...
T Consensus 101 e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 101 ENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp TTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 5 334444442 36999999999999864
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.10 E-value=30 Score=39.31 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=48.3
Q ss_pred hccCChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc
Q 000166 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (1974)
Q Consensus 294 l~s~KWkeRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y 363 (1974)
+.+.+|.-=.|.-|.+. . .+..=.+.+++|+|+|...|.+++..|+..++.+.+-=|..|...
T Consensus 21 ~~~~dw~~ileicD~I~----~---~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 21 LLETDWESILQICDLIR----Q---GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp CSSCCHHHHHHHHHHHH----T---TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh----C---CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 45677875444444432 1 233357899999999999999999999999999999999988654
No 125
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=58.76 E-value=37 Score=42.63 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh
Q 000166 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404 (1974)
Q Consensus 325 dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~ 404 (1974)
+-+.++-.++.|-.+.|-..|++-|-.||++ .|+.-+.-.|..-|-.--+.-++++.++|-.++.. .....
T Consensus 65 ~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~---Dpk~t 135 (507)
T 3u0r_A 65 SAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM---DAKGT 135 (507)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc---ChHHH
Confidence 4566777888888888899999999999977 45667777777777788888999999999999985 33334
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhh-hHHHHHhhhCCCCH
Q 000166 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICMECLNDGTP 459 (1974)
Q Consensus 405 ~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~-~~~~l~k~l~Ds~~ 459 (1974)
+..+...+.+-...+|..++.||...+...++..+.+.... ++..+.+.|.|-..
T Consensus 136 l~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 136 LGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 44444444445789999999999999988766655444443 55566677766544
No 126
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=57.43 E-value=64 Score=41.30 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=94.6
Q ss_pred CcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccc
Q 000166 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (1974)
Q Consensus 602 ~~~~i~~~L~s~~WK~RL~a~E~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~k~leil~~la~~~~~fs~~~ 681 (1974)
+=+.+...|++..|-.|-.|.-.|.+.+..-..... + +...|- ...+.+++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG----------R---~~~~N~---DLAvRLLCV------------ 226 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD----------I---QIRVDS---KLFSKIYEI------------ 226 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC--------------C---CCCCCT---THHHHHHHH------------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc----------e---eccccH---HHHHHHHHH------------
Confidence 446677899999999999999999988876321100 0 011122 222222222
Q ss_pred hhhhccchhhcccc---chhhhHHHHHHHHHHHhhchH-hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH
Q 000166 682 VVLCLLGISERVAD---IKTRAHAMKCLTTFSEAVGPG-FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (1974)
Q Consensus 682 ~~~~l~~lveKlgD---~K~r~~a~e~L~~~aE~~~p~-~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~~~l~~K 757 (1974)
+++.-..|-++| +-+|+.+.++|-.+ --.+.+ -++.+++.. ..+..+.|+..+|.-+... .++=. ++.
T Consensus 227 --LALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~~IL~qLV~~-l~~~~WEVRHGGLLGLKYL-~DLL~---~Ld 298 (800)
T 3oc3_A 227 --LVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPNDIIEQLVGF-LDSGDWQVQFSGLIALGYL-KEFVE---DKD 298 (800)
T ss_dssp --HHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSCCHHHHHTTG-GGCSCHHHHHHHHHHHHHT-GGGCC---CHH
T ss_pred --HHhccccccccCeeeeehHHHHHHHHHHH-HhCChhHHHHHHHHhh-cCCCCeeehhhhHHHHHHH-HHHHH---HHH
Confidence 222233333333 24789999988888 444433 356666654 3788999999999887776 44433 266
Q ss_pred hHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 000166 758 DLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1974)
Q Consensus 758 ~lI~~~k~~~L~~sN~~VR~aAi~Ll~~l 786 (1974)
.+++.+.. ||++.+-.||..|...|.-+
T Consensus 299 ~Vv~aVL~-GL~D~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 299 GLCRKLVS-LLSSPDEDIKLLSAELLCHF 326 (800)
T ss_dssp HHHHHHHH-HTTCSSHHHHHHHHHHHTTS
T ss_pred HHHHHHHh-hcCCcccHHHHHHHHHhhhh
Confidence 77777776 59999999999999887433
No 127
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=57.35 E-value=18 Score=47.69 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=53.7
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhh-hhh-HHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000166 408 VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDY-VPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLER 483 (1974)
Q Consensus 408 i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~-~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~ 483 (1974)
++.-|++.+|..|..++.=|+...+.. ....-++ ..+ .+.+..+|.|++.+||.+|+.+|..|...-|++....
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 445578899999998888888776422 1111122 234 4556788999999999999999999998888875443
No 128
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=56.68 E-value=8.9 Score=40.53 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhc------------cCCHHHHHHHHHHH
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK------------EKKPTVAESLTQTL 390 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklK------------EKK~~V~eA~~~aL 390 (1974)
+.+++..|-++|.|.+.+++..|+++|..|++-=...|...++--... +..+. |.-.+||+++.+++
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~-Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~ 125 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVA-VRNLFHYKGHPDPLKGDALNKAVRETAHETI 125 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHH-HHTTTTCCCCCCTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHH-HHHHHhcCCCCCcccccchhHHHHHHHHHHH
Confidence 578999999999999999999999999999866567787765555442 33332 33489999999999
Q ss_pred HHHHHh
Q 000166 391 QAMHKA 396 (1974)
Q Consensus 391 da~~~~ 396 (1974)
++++..
T Consensus 126 ~ll~d~ 131 (140)
T 1vdy_A 126 SAIFSE 131 (140)
T ss_dssp HHHTCC
T ss_pred HHHhCc
Confidence 999864
No 129
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=47.33 E-value=35 Score=36.08 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHHHHH
Q 000166 456 DGTPEVRDAAFSVLAAI 472 (1974)
Q Consensus 456 Ds~~~VR~aA~~~l~~l 472 (1974)
|....||+.|.+++..|
T Consensus 112 d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 112 ALNKAVRETAHETISAI 128 (140)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 44478999999988765
No 130
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=45.78 E-value=1.5e+02 Score=34.07 Aligned_cols=149 Identities=12% Similarity=0.060 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH-HhccCCHHHHHHHHHHHHHHHHhcCCCh
Q 000166 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE-KLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1974)
Q Consensus 323 y~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLe-klKEKK~~V~eA~~~aLda~~~~~~~~l 401 (1974)
-.+++.....+..|..-.|-..|+..|+.+ . ....+++.|.+ --.|+-=-|++.+-.++..++.. ..+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~--~~p 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKK--IEY 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHh--cCH
Confidence 455565555566666678888888876665 2 22456666665 45578888999998888888752 345
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 402 ~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
+..++-+..-.++.|+-||.-+...+.- ....+. +......++|.+-.+.+|++.-||++-.-.|--+.|.--+ .+
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~~~--~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd-~V 213 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRI-WTNRPY--FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD-LV 213 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCS-GGGSTT--TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHH-Hhccch--hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH-HH
Confidence 6667777788899999999766555321 111111 1111245789999999999999999999999888776543 35
Q ss_pred HHHhh
Q 000166 482 ERSIE 486 (1974)
Q Consensus 482 ~~~l~ 486 (1974)
..+++
T Consensus 214 ~~~~~ 218 (240)
T 3l9t_A 214 KIELK 218 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 131
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=45.52 E-value=1.9e+02 Score=32.08 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhcc
Q 000166 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE 377 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~--DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKE 377 (1974)
..|.+||+.|. .+|.+.+= .--+++-+..-+. =.|..+...-++.+.+|..-=.=...+|.+.++|++|.++=-
T Consensus 23 ~~r~~aL~sL~---~D~gL~~L-lPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~ 98 (196)
T 4atg_A 23 DMKDIAIECLE---KESGLQQL-VPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIG 98 (196)
T ss_dssp TTHHHHHHHHH---HCSSCTTT-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh---cCCChhhh-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHh
Confidence 45888888764 34555431 0112222222221 115555555555555555443344789999999999998754
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 000166 378 KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1974)
Q Consensus 378 KK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~ 433 (1974)
|+-.=. +|--.+. .++..|+.-..+.+|.++...++.+.+.|-.
T Consensus 99 k~l~~~-----~LRd~AA-------~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~d 142 (196)
T 4atg_A 99 KSIVDD-----DVRKMSA-------DIVKYIYDTYSRSYKTLAPRVLKTLKGVWMD 142 (196)
T ss_dssp TTCCCH-----HHHHHHH-------HHHHHHHHHHTTTSTTHHHHHHHHHHHHHTC
T ss_pred cccCHH-----HHHHHHH-------HHHHHHHHHhCccCchHHHHHHHHHHHHHcC
Confidence 442111 2332322 3555666667778888888888888777753
No 132
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=44.24 E-value=1.7e+02 Score=38.14 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=95.3
Q ss_pred hhhhhcc-CChHHHHHHHHHHHHhhhcCCCCCCChhHH-HHHHHHHhc-c-hhHHHHHHHHHHHHHHHHHhccccccchh
Q 000166 290 FWEGVKA-TKWSERKDAVAELTKLASTKRIAPGDFTEV-CRTLKKLIT-D-VNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1974)
Q Consensus 290 f~~~l~s-~KWkeRkEALe~L~~L~~~pKi~~~dy~dL-~~~Lkk~l~-D-sNv~vv~~A~~~i~~LA~gLr~~F~~y~~ 365 (1974)
+.+++.+ +=-.||++|+..|..+.+.-+ ...|.- ++.|-..|. | .++-+|..+++++-.+-.. .+...-..
T Consensus 26 L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~--~~~~~~~~ 100 (651)
T 3grl_A 26 LCDRVASSTLLDDRRNAVRALKSLSKKYR---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN--DEEEEVEE 100 (651)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHTTTTTT---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC--C-------
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHhH---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC--CCcccccc
Confidence 3445565 567788888888888853211 222222 455666665 5 5777777766666655322 22221100
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhh-
Q 000166 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK- 444 (1974)
Q Consensus 366 ~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k- 444 (1974)
. -.+....+. ..-.|.+.+. .+-+.-++..|+.....+|.-++..|...+.+.+...-..++.
T Consensus 101 ~--------~~~~~~~~~---~~~~d~f~~~-----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~ 164 (651)
T 3grl_A 101 N--------STRQSEDLG---SQFTEIFIKQ-----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVS 164 (651)
T ss_dssp ---------------CHH---HHHHHHHHHS-----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHS
T ss_pred c--------ccccchHHH---HHHHHHHHcC-----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhC
Confidence 0 000000000 0111222221 2345556778899999999999999998887654322222222
Q ss_pred -hhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000166 445 -DYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 445 -~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
.-++.++..|+|+...||+.|..+|..+.+
T Consensus 165 p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 165 PMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp TTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 367899999999999999999888887765
No 133
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=43.41 E-value=97 Score=43.01 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccccc-cchhhhHHHHHHHh-----ccCCHHHHHHHHHH---HHHHHHhcCCChhhhHHHH
Q 000166 338 NIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKL-----KEKKPTVAESLTQT---LQAMHKAGCLNLVDVVEDV 408 (1974)
Q Consensus 338 Nv~vv~~A~~~i~~LA~gLr~~F~-~y~~~~l~~lLekl-----KEKK~~V~eA~~~a---Lda~~~~~~~~l~~~~e~i 408 (1974)
+-...-.++=++|.+|.+|..... ++...+++.|+.-. ||.|+-|+..+.=+ ..-|...+..-|..++..+
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L 571 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKL 571 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHH
Confidence 355666667778888877775444 66777777777544 45566555432211 2223332222366778888
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhhCChhH-------HhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH-
Q 000166 409 KTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP- 480 (1974)
Q Consensus 409 ~~al~~KnP~vk~etl~~L~r~l~~~~~~~-------~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~- 480 (1974)
.++|...+|.|..-+..=+...-+.+...- ..+++..++..+..+..+=+++-.-.=++++|+++..+|...
T Consensus 572 ~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~ 651 (1073)
T 3gjx_A 572 FEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV 651 (1073)
T ss_dssp HHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence 899999999987755544444333333211 112345555666666777788888889999999999999654
Q ss_pred HHHHhhcCCHHHHHHHHHHHh
Q 000166 481 LERSIEKLDDVRRNKLSEMIA 501 (1974)
Q Consensus 481 l~~~l~~Ld~~kk~KI~e~~~ 501 (1974)
...+++.|=+.--.+..+.++
T Consensus 652 ~~~~i~~Lm~~~~~~w~~l~~ 672 (1073)
T 3gjx_A 652 QEHLIEKYMLLPNQVWDSIIQ 672 (1073)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666665555555666554
No 134
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=38.98 E-value=61 Score=36.95 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=50.0
Q ss_pred hHHHHHHHhhcCCc--hhHHHHHHHHHHHHhhCChhHHhHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000166 404 VVEDVKTSVKNKVP--LVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1974)
Q Consensus 404 ~~e~i~~al~~KnP--~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1974)
.++.+...|.+.+| +++.....+|...-...+ ..-..+. ...+|.++.+|...+++|++.|+.+|.-|..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~-~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKS-EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 35677788888888 888888877765332221 1111112 2468999999999999999999999888754
No 135
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=31.14 E-value=2.5e+02 Score=31.16 Aligned_cols=88 Identities=10% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCChhhhHHHHHHHh----hcCCchhHHHHHHHHHH---HHhhCChhHHhHhhhhhHHHHHhhh---CC
Q 000166 387 TQTLQAMHKAGCLNLVDVVEDVKTSV----KNKVPLVRSLTLNWVTF---CIETSSKAAVLKVHKDYVPICMECL---ND 456 (1974)
Q Consensus 387 ~~aLda~~~~~~~~l~~~~e~i~~al----~~KnP~vk~etl~~L~r---~l~~~~~~~~~~~~k~~~~~l~k~l---~D 456 (1974)
.+||..+-.- .++..+++.+..+. .+..- -...+.++-| ++-..+.-.+.+.+..++|+++.|+ .-
T Consensus 26 ~~aL~sL~~D--~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l 101 (196)
T 4atg_A 26 DIAIECLEKE--SGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSI 101 (196)
T ss_dssp HHHHHHHHHC--SSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcC--CChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhccc
Confidence 4556666553 67777776655433 22211 1223333333 3322232334467788999999987 11
Q ss_pred CCHHHHHHHHHHHHHHHHHhCh
Q 000166 457 GTPEVRDAAFSVLAAIAKSVGM 478 (1974)
Q Consensus 457 s~~~VR~aA~~~l~~lmk~~Ge 478 (1974)
....+||-|+..|+.+.+..|.
T Consensus 102 ~~~~LRd~AA~lL~~I~~~~~~ 123 (196)
T 4atg_A 102 VDDDVRKMSADIVKYIYDTYSR 123 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHhCc
Confidence 1128999999999999999995
No 136
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=28.82 E-value=7.2e+02 Score=30.21 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc--------cccccchhhhHHHH
Q 000166 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--------THFSGSSRFLLPVL 371 (1974)
Q Consensus 300 keRkEALe~L~~L~~~pKi~~~dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr--------~~F~~y~~~~l~~l 371 (1974)
.+|.-.++.+..|+..-++ +|..++..+..+-.+.+..+...++..++.|-.-+. ..|..|++.++.++
T Consensus 106 ~dRa~LidD~~~La~ag~~---~~~~~l~l~~yL~~E~~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (419)
T 3rjo_A 106 NDRASLINNAFQLVSIGKL---SIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDL 182 (419)
T ss_dssp HHHHHHHHHHHHHHHHTSS---CHHHHHHHHGGGGGCCSHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 4566666666666655443 688888887776669999999999999998876664 34889999999999
Q ss_pred HHHhcc--CCHHHHHHHHHHHHHHHHhcCCChhhhHHHH
Q 000166 372 LEKLKE--KKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1974)
Q Consensus 372 LeklKE--KK~~V~eA~~~aLda~~~~~~~~l~~~~e~i 408 (1974)
+++++= .-.....-++..+-.++.. .+..+|++..
T Consensus 183 ~~~lgw~~~~~~~~~~lR~~~l~~ac~--~g~~~c~~~A 219 (419)
T 3rjo_A 183 IDKQTWTDEGSVSERMLRSQLLLLACV--HNYQPCVQRA 219 (419)
T ss_dssp HHHCCSSCCSCHHHHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred HHHcCCCCCchHHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 999952 2223334455555555554 4556666543
No 137
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=27.12 E-value=2.7e+02 Score=29.25 Aligned_cols=118 Identities=10% Similarity=0.098 Sum_probs=69.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh------hHHhH
Q 000166 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK------AAVLK 441 (1974)
Q Consensus 368 l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~------~~~~~ 441 (1974)
+...|+-|.|-|+++-....+.|..|+..+.-.-..+++-+...++.-.|.-|.-.|=.+...+.+... .+..+
T Consensus 7 f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~ 86 (145)
T 3d9j_A 7 FNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAP 86 (145)
T ss_dssp HHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHH
Confidence 456788888988777788888888888762222345666666667666666665544444433443322 12222
Q ss_pred -hhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH--HHhChhHHHHHhh
Q 000166 442 -VHKDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLERSIE 486 (1974)
Q Consensus 442 -~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm--k~~Ge~~l~~~l~ 486 (1974)
+...+...+.... ...+++|..-...+.+-- .+++.+.+.++-+
T Consensus 87 ~F~~~L~~~f~~~~-~~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~ 133 (145)
T 3d9j_A 87 RFSNNIISTFQNLY-RCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLD 133 (145)
T ss_dssp HHHHHHHHHHHHHT-SSCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 2233333333333 345899999888888877 4566665554433
No 138
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=25.97 E-value=77 Score=35.88 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhchHhHHHHHHHhhhh------cCChhhHHHHHHHHHHHHH-HhccCc-cchHhHHHHHhhhcCCCccHH
Q 000166 703 MKCLTTFSEAVGPGFIFERLYKIMKD------HKNPKVLSEGILWMVSAVE-DFGVSH-LKLKDLIDFCKDTGLQSSAAA 774 (1974)
Q Consensus 703 ~e~L~~~aE~~~p~~V~~~l~~~~~~------~KnPKv~ae~l~wl~~ai~-eFG~~~-l~~K~lI~~~k~~~L~~sN~~ 774 (1974)
...+..| +..|...++..+.....+ ......+.+|+.++..+++ ..|+.. +.-...|..+-.+ |.++|+.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~-L~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRA-MDPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTT-CCTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHH-hCCCCch
Confidence 3455555 445555555444433211 1134678899999988876 667653 3444566777665 9999999
Q ss_pred HHHHHHHHHHHHHhhhC
Q 000166 775 TRNATIKLLGALHKFVG 791 (1974)
Q Consensus 775 VR~aAi~Ll~~ly~~~G 791 (1974)
+|+.++.+|.++-.|-|
T Consensus 112 ~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQ 128 (233)
T ss_dssp HHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999888765
No 139
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=25.85 E-value=4.4e+02 Score=33.25 Aligned_cols=141 Identities=14% Similarity=0.129 Sum_probs=101.4
Q ss_pred ChhHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh
Q 000166 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1974)
Q Consensus 322 dy~dL~~~Lkk~l~DsNv~vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l 401 (1974)
+|..++..- -.+...=.+|++.|...- +.|-.....-+..+++-..|-=..||-.+...|-.++.. -.+
T Consensus 30 ~y~~Il~~~-----kg~~k~K~LaaQ~I~kff----k~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i 98 (507)
T 3u0r_A 30 AYQVILDGV-----KGGTKEKRLAAQFIPKFF----KHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL 98 (507)
T ss_dssp HHHHHHHGG-----GSCHHHHHHHHHHHHHHG----GGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH
T ss_pred HHHHHHHhc-----CCCHHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh
Confidence 565555532 234677778888777665 568788888999999999999999998887777777543 235
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000166 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1974)
Q Consensus 402 ~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1974)
.-+.|-+...|+.--|.-...+-+=|...+...++.++..+...+.+ +++.||+-....|..-++-++...+
T Consensus 99 ~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~--------~~e~~Rer~lkFi~~kl~~l~~~~l 170 (507)
T 3u0r_A 99 PRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ--------GEDIVRERAIKFLSTKLKTLPDEVL 170 (507)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc--------cchHHHHHHHHHHHHHHhhcchhhc
Confidence 55566666777777777776666777777777777776444443333 5799999999999888888886544
No 140
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.85 E-value=3e+02 Score=28.22 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHhcCCChhhhHH---HHHHHhh---
Q 000166 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSVK--- 413 (1974)
Q Consensus 341 vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK-~~V~eA~~~aLda~~~~~~~~l~~~~e---~i~~al~--- 413 (1974)
=+..|++|+..|.- +.| -..++--.+..-=|+| ...++.+..-|..++..+.++.+++.. .+.+.+.
T Consensus 22 D~~Ea~~cl~eL~~---p~f---~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~ 95 (129)
T 2nsz_A 22 DISEAEHCLKELEV---PHF---HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDIN 95 (129)
T ss_dssp CHHHHHHHHHHHTC---GGG---HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC---Ccc---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhh
Confidence 35788899988752 233 3445555555555666 378899999999998776688777754 3333333
Q ss_pred cCCchhHHHHHHHHHHHHhh
Q 000166 414 NKVPLVRSLTLNWVTFCIET 433 (1974)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~ 433 (1974)
--.|....-+..|++|++..
T Consensus 96 lDiP~a~~~l~~~v~~ai~~ 115 (129)
T 2nsz_A 96 LDVPHSYSVLERFVEECFQA 115 (129)
T ss_dssp HHSTTHHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHHC
Confidence 46799999999999999874
No 141
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.19 E-value=3e+02 Score=29.22 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHhcCCChhhhHH---HHHHHhh---
Q 000166 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSVK--- 413 (1974)
Q Consensus 341 vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK-~~V~eA~~~aLda~~~~~~~~l~~~~e---~i~~al~--- 413 (1974)
=+..|++|+..|.- +.| -..++--++..-=|+| ...++.+..-|..++..+.++.+++.. .+.+.|.
T Consensus 24 D~~EA~~cl~EL~~---p~f---~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~ 97 (152)
T 2ion_A 24 DISEAEHCLKELEV---PHF---HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDIN 97 (152)
T ss_dssp CHHHHHHHHHHHTC---GGG---HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC---Ccc---hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhc
Confidence 45788899988752 233 3344444555555565 678899999999998776688777753 3444433
Q ss_pred cCCchhHHHHHHHHHHHHhh
Q 000166 414 NKVPLVRSLTLNWVTFCIET 433 (1974)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~ 433 (1974)
--.|....-+..|++||+..
T Consensus 98 lDiP~A~~~la~~v~~ai~~ 117 (152)
T 2ion_A 98 LDVPHSYSVLERFVEECFQA 117 (152)
T ss_dssp HHSTTHHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHHC
Confidence 46799999999999999974
No 142
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.09 E-value=4.2e+02 Score=31.52 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH---HHHHHh---hcC
Q 000166 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSV---KNK 415 (1974)
Q Consensus 342 v~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e---~i~~al---~~K 415 (1974)
+..|++|+..|.. +. |...++--++..-=|+|..-|+++..-|..++..+.++.+++.. .+.+.+ .--
T Consensus 27 ~~Ea~~ci~el~~---p~---~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl~lD 100 (339)
T 1ug3_A 27 MKEAVQCVQELAS---PS---LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEID 100 (339)
T ss_dssp HHHHHHHHHTTCC---GG---GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC---cc---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhhcC
Confidence 3478888887741 11 34566777888888889999999999999999776778777754 344433 357
Q ss_pred CchhHHHHHHHHHHHHhhCChhHHhHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHh
Q 000166 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485 (1974)
Q Consensus 416 nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l 485 (1974)
.|..+.-+..|+++|+...--+ + ..++..+.+.+.+ +...++-..+++..+.+..|.+.+....
T Consensus 101 iP~a~~~La~~v~~~i~~g~l~-~----~~l~~~~~~~l~~-~g~~~~fl~~vl~~l~~~~g~~~l~~~~ 164 (339)
T 1ug3_A 101 IPHVWLYLAELVTPILQEGGVP-M----GELFREITKPLRP-LGKAASLLLEILGLLCKSMGPKKVGTLW 164 (339)
T ss_dssp CTTHHHHHHHHHGGGGSTTSCC-H----HHHHHHHTTTHHH-HTCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHCCCCC-H----HHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 8999999999999998652110 0 1122222222211 1233455555666666666755554433
No 143
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=22.07 E-value=1.6e+02 Score=29.54 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=60.8
Q ss_pred HHHHHHHHhcChhHHhhhhhh--hHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHH
Q 000166 917 ITLGAVASAMGPAVEKSSKGV--LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF 994 (1974)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l--~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~R~e~l 994 (1974)
..+..|+.-+|..+++.++.| -..-+..+.+....+++.+.+.|..|....|-+.-+..+..+|..- .|.++.
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~Lg~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~-----~~~dva 93 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYLEMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKS-----GLSDLA 93 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTTTCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHT-----TCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHc-----CcHHHH
Confidence 345678899999888887754 3556777777777899999999999999999888899999999843 356666
Q ss_pred HHHHH
Q 000166 995 DWLSK 999 (1974)
Q Consensus 995 ~wL~~ 999 (1974)
.=|..
T Consensus 94 e~l~~ 98 (110)
T 1wxp_A 94 ESLTN 98 (110)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55543
No 144
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.93 E-value=2.6e+02 Score=30.11 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH---HHHHHhh---c
Q 000166 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSVK---N 414 (1974)
Q Consensus 341 vv~~A~~~i~~LA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e---~i~~al~---~ 414 (1974)
=+..|++|+..|.. ..|...++.-++..-=|+|..-||.+..-|..++. +.++.+++.. .+++.+. -
T Consensus 25 D~~Ea~~~l~eL~~------p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~lle~ldDl~i 97 (165)
T 2rg8_A 25 DTNEVAEMLRDLNL------GEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDLPELAL 97 (165)
T ss_dssp CHHHHHHHHHHHTC------SGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhChhhcc
Confidence 35677788877651 23555667777777778999999999999999865 4677777753 4444443 4
Q ss_pred CCchhHHHHHHHHHHHHhh
Q 000166 415 KVPLVRSLTLNWVTFCIET 433 (1974)
Q Consensus 415 KnP~vk~etl~~L~r~l~~ 433 (1974)
-.|.+..-+..|++|++..
T Consensus 98 DiP~a~~~la~fiarav~d 116 (165)
T 2rg8_A 98 DTPRAPQLVGQFIARAVGD 116 (165)
T ss_dssp HCTTHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHc
Confidence 6799999999999999964
No 145
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=20.56 E-value=52 Score=37.31 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHHHHH-hhCCC-ccChhHHHhhchhhhcCCChhHHHHHHHHHHHHHHhhCC
Q 000166 142 AKAVVPAIDVMFQALS-EFGAK-IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201 (1974)
Q Consensus 142 PKvvaaai~~l~~~l~-~FG~k-vv~~K~ilk~l~~lf~h~dk~VR~ea~~L~velyrwlG~ 201 (1974)
....-.|+.||+.++. .+|.. ++.-...+..+-..+.+++..+|..+..|+..++.|=|+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~ 129 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQP 129 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC
Confidence 4667888888887775 56774 445555678888889999999999999999999988753
Done!