Query 000167
Match_columns 1972
No_of_seqs 428 out of 1438
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 21:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1820 Microtubule-associated 100.0 1.1E-51 2.4E-56 531.2 36.4 745 607-1390 11-793 (815)
2 KOG1820 Microtubule-associated 100.0 7.4E-42 1.6E-46 440.6 42.1 747 20-816 14-791 (815)
3 KOG1824 TATA-binding protein-i 100.0 1.8E-26 3.9E-31 285.1 56.3 922 15-1052 9-1107(1233)
4 KOG2171 Karyopherin (importin) 99.9 8E-16 1.7E-20 199.2 69.6 880 49-1067 115-1073(1075)
5 PF12348 CLASP_N: CLASP N term 99.9 7E-21 1.5E-25 222.2 19.8 210 284-496 7-227 (228)
6 KOG2171 Karyopherin (importin) 99.9 6.1E-15 1.3E-19 191.2 74.6 834 289-1376 8-930 (1075)
7 PF12348 CLASP_N: CLASP N term 99.7 4.7E-17 1E-21 190.1 17.1 208 853-1063 7-227 (228)
8 KOG1824 TATA-binding protein-i 99.7 2.9E-09 6.3E-14 134.5 75.0 501 341-983 149-746 (1233)
9 KOG1242 Protein containing ada 99.6 1.5E-13 3.2E-18 169.8 32.5 514 138-816 27-551 (569)
10 KOG2023 Nuclear transport rece 99.6 7.6E-12 1.6E-16 152.4 46.0 692 322-1066 125-882 (885)
11 KOG2023 Nuclear transport rece 99.6 4.2E-11 9E-16 146.1 46.2 672 66-999 142-854 (885)
12 KOG2956 CLIP-associating prote 99.5 1.3E-12 2.9E-17 155.0 26.8 387 681-1072 60-508 (516)
13 KOG1242 Protein containing ada 99.5 3E-11 6.5E-16 149.6 31.3 365 31-481 75-451 (569)
14 KOG0213 Splicing factor 3b, su 99.4 5E-09 1.1E-13 128.9 44.7 661 294-1052 372-1118(1172)
15 KOG0915 Uncharacterized conser 99.4 8E-11 1.7E-15 155.0 30.9 567 402-1042 817-1428(1702)
16 PLN03200 cellulose synthase-in 99.4 1.2E-07 2.6E-12 133.8 62.1 773 52-1041 14-860 (2102)
17 PLN03200 cellulose synthase-in 99.4 4.3E-07 9.3E-12 128.4 64.4 810 289-1388 17-887 (2102)
18 KOG1241 Karyopherin (importin) 99.3 3.7E-09 8.1E-14 131.9 37.7 587 300-1049 145-819 (859)
19 KOG0213 Splicing factor 3b, su 99.3 2.6E-07 5.7E-12 114.2 49.4 721 19-998 371-1138(1172)
20 KOG2956 CLIP-associating prote 99.2 2.3E-08 5E-13 119.7 30.7 212 289-503 290-506 (516)
21 KOG1241 Karyopherin (importin) 99.1 3.7E-05 7.9E-10 97.3 58.1 566 295-1042 227-856 (859)
22 COG5181 HSH155 U2 snRNP splice 99.1 8.4E-07 1.8E-11 108.0 40.9 684 19-997 176-942 (975)
23 COG5215 KAP95 Karyopherin (imp 99.1 4.2E-07 9.1E-12 110.0 37.6 500 331-1042 183-727 (858)
24 KOG0212 Uncharacterized conser 99.1 9.5E-08 2.1E-12 116.1 30.7 379 603-1043 2-408 (675)
25 COG5181 HSH155 U2 snRNP splice 99.1 4.6E-07 9.9E-12 110.3 35.6 620 336-1052 257-923 (975)
26 KOG0212 Uncharacterized conser 99.0 5.7E-07 1.2E-11 109.6 32.1 404 717-1297 42-456 (675)
27 KOG0211 Protein phosphatase 2A 98.9 4.6E-06 9.9E-11 109.8 39.3 561 294-1046 91-669 (759)
28 KOG1248 Uncharacterized conser 98.9 0.0017 3.8E-08 86.7 61.5 195 869-1070 713-923 (1176)
29 KOG0915 Uncharacterized conser 98.9 8.1E-05 1.8E-09 100.1 49.5 286 127-475 817-1111(1702)
30 KOG2933 Uncharacterized conser 98.9 1.2E-08 2.6E-13 116.8 12.8 183 290-474 93-277 (334)
31 PRK13800 putative oxidoreducta 98.7 3E-06 6.5E-11 117.8 28.1 268 687-1037 624-895 (897)
32 PF01602 Adaptin_N: Adaptin N 98.7 3.8E-05 8.2E-10 101.6 37.2 459 292-923 49-523 (526)
33 PF01602 Adaptin_N: Adaptin N 98.6 6.9E-05 1.5E-09 99.2 39.0 497 57-786 9-522 (526)
34 PRK13800 putative oxidoreducta 98.6 5.4E-06 1.2E-10 115.3 26.3 242 718-1039 622-865 (897)
35 COG5215 KAP95 Karyopherin (imp 98.5 0.0017 3.7E-08 79.8 42.3 147 332-478 270-441 (858)
36 KOG0211 Protein phosphatase 2A 98.5 4.4E-05 9.6E-10 100.7 31.7 293 606-967 360-666 (759)
37 PRK09687 putative lyase; Provi 98.5 1.8E-05 4E-10 94.9 23.9 147 856-1037 131-278 (280)
38 KOG2933 Uncharacterized conser 98.4 1.4E-06 3.1E-11 100.2 12.7 180 857-1039 92-275 (334)
39 PTZ00429 beta-adaptin; Provisi 98.4 0.0053 1.1E-07 82.5 47.4 82 383-471 50-131 (746)
40 PTZ00429 beta-adaptin; Provisi 98.3 0.00054 1.2E-08 91.7 35.4 144 10-156 139-284 (746)
41 KOG1248 Uncharacterized conser 98.2 0.076 1.7E-06 71.8 62.2 191 866-1058 667-873 (1176)
42 PRK09687 putative lyase; Provi 98.2 8.4E-05 1.8E-09 89.2 21.4 149 862-1039 100-248 (280)
43 KOG1943 Beta-tubulin folding c 97.8 0.21 4.6E-06 67.0 41.7 496 325-966 341-882 (1133)
44 PF05004 IFRD: Interferon-rela 97.5 0.0059 1.3E-07 74.5 20.4 190 289-478 47-261 (309)
45 KOG1060 Vesicle coat complex A 97.4 0.24 5.1E-06 64.3 32.3 85 381-472 51-135 (968)
46 PF10508 Proteasom_PSMB: Prote 97.3 0.42 9.1E-06 62.8 36.2 396 722-1243 43-465 (503)
47 KOG1060 Vesicle coat complex A 97.3 0.1 2.2E-06 67.4 28.2 144 321-473 388-532 (968)
48 KOG1240 Protein kinase contain 97.2 0.018 4E-07 76.9 21.4 301 604-981 425-745 (1431)
49 PF10508 Proteasom_PSMB: Prote 97.1 0.41 8.9E-06 62.9 33.0 187 291-477 208-424 (503)
50 KOG1062 Vesicle coat complex A 97.1 1.9 4.1E-05 56.7 37.0 124 347-477 87-211 (866)
51 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.0037 8E-08 62.5 10.6 80 912-993 3-88 (97)
52 KOG0166 Karyopherin (importin) 97.1 0.068 1.5E-06 67.8 23.9 183 289-472 70-264 (514)
53 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0024 5.2E-08 63.8 8.6 93 301-394 2-95 (97)
54 KOG0166 Karyopherin (importin) 96.9 0.02 4.4E-07 72.4 17.2 267 718-1041 110-393 (514)
55 KOG1943 Beta-tubulin folding c 96.9 3.3 7.2E-05 56.3 43.8 371 932-1356 337-743 (1133)
56 KOG2259 Uncharacterized conser 96.9 0.18 3.9E-06 64.1 24.6 264 716-1002 197-511 (823)
57 KOG1240 Protein kinase contain 96.8 0.078 1.7E-06 71.3 21.6 288 684-1006 422-729 (1431)
58 PF12460 MMS19_C: RNAPII trans 96.8 0.5 1.1E-05 60.7 29.0 191 857-1055 193-407 (415)
59 KOG1059 Vesicle coat complex A 96.8 0.48 1E-05 61.1 27.0 253 155-467 132-394 (877)
60 PF12460 MMS19_C: RNAPII trans 96.7 0.1 2.2E-06 67.0 21.7 190 295-489 200-408 (415)
61 KOG1061 Vesicle coat complex A 96.6 1.4 3E-05 58.0 30.6 128 893-1030 348-478 (734)
62 PF12717 Cnd1: non-SMC mitotic 96.6 0.041 8.8E-07 61.9 15.2 130 866-1003 1-140 (178)
63 KOG1058 Vesicle coat complex C 96.4 0.86 1.9E-05 59.1 26.1 306 897-1289 101-429 (948)
64 KOG1061 Vesicle coat complex A 96.4 0.26 5.6E-06 64.4 22.2 364 10-479 120-491 (734)
65 KOG4535 HEAT and armadillo rep 96.4 1.7 3.7E-05 53.7 27.0 148 296-473 7-178 (728)
66 PF12717 Cnd1: non-SMC mitotic 96.3 0.085 1.8E-06 59.4 15.7 108 338-449 1-109 (178)
67 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0072 1.6E-07 53.8 5.6 55 417-472 1-55 (55)
68 PF13646 HEAT_2: HEAT repeats; 96.3 0.025 5.4E-07 55.4 10.1 86 368-470 1-88 (88)
69 PF14500 MMS19_N: Dos2-interac 96.3 1.1 2.4E-05 53.5 25.6 239 172-493 3-256 (262)
70 KOG1020 Sister chromatid cohes 96.3 9.5 0.00021 53.8 42.9 77 399-478 812-888 (1692)
71 COG1413 FOG: HEAT repeat [Ener 96.2 0.8 1.7E-05 57.0 25.1 154 865-1051 161-314 (335)
72 PF13251 DUF4042: Domain of un 96.1 0.038 8.2E-07 61.7 11.1 138 340-477 1-177 (182)
73 cd00020 ARM Armadillo/beta-cat 96.0 0.045 9.7E-07 56.5 10.8 107 366-473 7-119 (120)
74 PF02985 HEAT: HEAT repeat; I 96.0 0.01 2.2E-07 46.2 4.1 30 446-475 1-30 (31)
75 KOG1062 Vesicle coat complex A 95.9 3.3 7.2E-05 54.6 28.1 250 728-1007 152-419 (866)
76 KOG2259 Uncharacterized conser 95.9 0.39 8.5E-06 61.3 19.3 307 360-747 192-511 (823)
77 KOG1059 Vesicle coat complex A 95.8 0.74 1.6E-05 59.5 21.2 180 854-1045 219-405 (877)
78 cd00020 ARM Armadillo/beta-cat 95.7 0.02 4.3E-07 59.2 6.4 109 855-964 9-119 (120)
79 KOG4535 HEAT and armadillo rep 95.7 0.15 3.3E-06 62.3 14.0 294 19-360 4-330 (728)
80 PF05004 IFRD: Interferon-rela 95.6 0.35 7.6E-06 59.2 17.6 185 857-1044 47-260 (309)
81 KOG2032 Uncharacterized conser 95.6 0.22 4.7E-06 61.9 15.2 190 860-1053 224-428 (533)
82 KOG1020 Sister chromatid cohes 95.4 21 0.00045 50.7 39.8 115 359-478 809-925 (1692)
83 PF12231 Rif1_N: Rap1-interact 95.3 6.2 0.00014 49.9 27.9 313 609-964 1-351 (372)
84 KOG2032 Uncharacterized conser 95.3 0.58 1.2E-05 58.3 17.7 211 289-500 221-442 (533)
85 PF13646 HEAT_2: HEAT repeats; 95.2 0.1 2.2E-06 51.0 9.3 86 938-1037 1-88 (88)
86 KOG1078 Vesicle coat complex C 95.1 5.8 0.00013 52.4 26.0 52 986-1040 479-531 (865)
87 KOG0413 Uncharacterized conser 94.8 22 0.00048 47.9 32.1 127 910-1044 946-1076(1529)
88 KOG2025 Chromosome condensatio 94.7 0.41 8.8E-06 61.6 14.4 207 849-1069 81-292 (892)
89 PF04118 Dopey_N: Dopey, N-ter 94.6 0.99 2.1E-05 54.9 17.2 174 864-1044 22-254 (307)
90 KOG0392 SNF2 family DNA-depend 94.6 0.23 5.1E-06 67.2 12.6 134 911-1047 792-931 (1549)
91 PF13513 HEAT_EZ: HEAT-like re 94.6 0.042 9.1E-07 48.9 4.1 54 910-963 2-55 (55)
92 KOG0392 SNF2 family DNA-depend 94.5 0.21 4.6E-06 67.6 11.7 200 300-502 748-960 (1549)
93 PF10274 ParcG: Parkin co-regu 94.4 0.21 4.5E-06 55.6 9.8 118 854-972 39-171 (183)
94 COG1413 FOG: HEAT repeat [Ener 94.3 0.78 1.7E-05 57.1 16.0 154 856-1042 46-210 (335)
95 KOG1058 Vesicle coat complex C 94.2 12 0.00027 49.2 25.7 361 604-1032 23-416 (948)
96 cd03567 VHS_GGA VHS domain fam 93.9 1 2.2E-05 48.4 13.5 98 862-968 14-119 (139)
97 cd03568 VHS_STAM VHS domain fa 93.7 0.9 1.9E-05 49.2 12.9 98 862-968 13-113 (144)
98 PF14500 MMS19_N: Dos2-interac 93.7 10 0.00022 45.5 22.9 187 866-1057 53-253 (262)
99 TIGR02270 conserved hypothetic 93.7 2.9 6.3E-05 53.2 19.4 146 856-1039 120-265 (410)
100 COG5218 YCG1 Chromosome conden 93.6 1.2 2.6E-05 56.2 14.9 206 850-1070 88-295 (885)
101 TIGR02270 conserved hypothetic 93.5 0.62 1.3E-05 59.1 12.9 118 326-471 87-204 (410)
102 KOG1967 DNA repair/transcripti 93.4 0.36 7.7E-06 63.9 10.6 146 323-473 865-1023(1030)
103 COG5096 Vesicle coat complex, 93.2 2.4 5.2E-05 56.8 17.9 167 294-475 28-196 (757)
104 KOG1077 Vesicle coat complex A 93.0 23 0.00051 46.3 24.9 291 106-436 124-437 (938)
105 COG5064 SRP1 Karyopherin (impo 92.8 4.2 9.1E-05 48.4 17.0 302 856-1200 74-399 (526)
106 PF00790 VHS: VHS domain; Int 92.5 0.78 1.7E-05 49.5 10.2 106 862-976 18-129 (140)
107 KOG4524 Uncharacterized conser 92.5 34 0.00073 46.7 26.4 86 293-378 811-901 (1014)
108 PF02985 HEAT: HEAT repeat; I 92.3 0.25 5.5E-06 38.4 4.5 31 937-967 1-31 (31)
109 smart00288 VHS Domain present 92.3 1.7 3.6E-05 46.5 12.3 98 862-968 13-114 (133)
110 KOG2025 Chromosome condensatio 92.1 36 0.00078 44.9 25.1 198 138-427 52-254 (892)
111 KOG1949 Uncharacterized conser 91.7 4.6 9.9E-05 52.3 16.6 184 767-1001 182-370 (1005)
112 COG5240 SEC21 Vesicle coat com 91.5 52 0.0011 42.3 38.4 112 344-466 40-158 (898)
113 PF12719 Cnd3: Nuclear condens 91.4 2.2 4.7E-05 52.3 13.6 126 71-196 2-142 (298)
114 PF10274 ParcG: Parkin co-regu 91.0 3 6.6E-05 46.6 12.8 116 366-481 38-171 (183)
115 KOG1077 Vesicle coat complex A 90.9 67 0.0014 42.5 26.8 111 892-1006 326-437 (938)
116 cd03561 VHS VHS domain family; 90.9 2 4.3E-05 45.9 11.1 100 862-970 13-117 (133)
117 KOG1525 Sister chromatid cohes 90.9 45 0.00098 48.0 26.7 236 663-966 164-406 (1266)
118 KOG1967 DNA repair/transcripti 90.9 1.1 2.4E-05 59.5 10.7 154 851-1039 865-1022(1030)
119 cd03569 VHS_Hrs_Vps27p VHS dom 90.8 3.7 7.9E-05 44.4 13.0 100 862-970 17-119 (142)
120 KOG2160 Armadillo/beta-catenin 90.4 6.9 0.00015 47.8 16.0 175 863-1041 93-282 (342)
121 PF13251 DUF4042: Domain of un 90.2 2.1 4.5E-05 48.1 10.9 133 910-1043 1-176 (182)
122 cd03565 VHS_Tom1 VHS domain fa 90.0 3.7 8E-05 44.3 12.2 100 862-970 14-120 (141)
123 cd00197 VHS_ENTH_ANTH VHS, ENT 89.9 2.5 5.4E-05 43.9 10.6 88 872-964 19-114 (115)
124 COG5096 Vesicle coat complex, 89.9 5.5 0.00012 53.5 16.0 168 862-1042 28-196 (757)
125 PF13001 Ecm29: Proteasome sta 89.9 81 0.0017 41.7 33.5 96 357-456 14-113 (501)
126 KOG4653 Uncharacterized conser 89.9 19 0.00041 48.3 20.1 237 719-1044 729-967 (982)
127 PF05804 KAP: Kinesin-associat 89.3 27 0.00059 47.5 21.9 128 916-1043 509-651 (708)
128 PF12719 Cnd3: Nuclear condens 89.0 5.3 0.00011 49.0 14.3 125 350-474 8-143 (298)
129 PF11865 DUF3385: Domain of un 89.0 2.8 6E-05 46.4 10.6 146 321-477 6-160 (160)
130 cd03569 VHS_Hrs_Vps27p VHS dom 88.9 1.9 4.1E-05 46.6 9.0 77 125-201 38-118 (142)
131 cd03568 VHS_STAM VHS domain fa 88.7 6.3 0.00014 42.7 12.8 82 398-479 32-115 (144)
132 KOG1243 Protein kinase [Genera 88.2 1.5 3.3E-05 57.2 8.9 185 851-1044 328-518 (690)
133 KOG1525 Sister chromatid cohes 88.2 20 0.00043 51.4 20.2 257 766-1042 58-330 (1266)
134 KOG0168 Putative ubiquitin fus 88.2 14 0.0003 49.3 17.2 176 298-477 181-367 (1051)
135 PF04826 Arm_2: Armadillo-like 88.1 7.1 0.00015 46.5 13.9 175 9-188 51-253 (254)
136 KOG1243 Protein kinase [Genera 87.8 1.3 2.8E-05 57.7 8.0 171 290-472 259-435 (690)
137 COG5218 YCG1 Chromosome conden 87.6 8.3 0.00018 49.1 14.2 196 291-501 97-293 (885)
138 COG5064 SRP1 Karyopherin (impo 86.5 10 0.00022 45.4 13.4 305 604-924 74-398 (526)
139 PF04118 Dopey_N: Dopey, N-ter 86.4 18 0.00039 44.3 16.2 148 295-480 21-173 (307)
140 KOG0803 Predicted E3 ubiquitin 86.0 7.5 0.00016 55.4 14.3 199 857-1056 45-278 (1312)
141 cd00197 VHS_ENTH_ANTH VHS, ENT 85.5 5.8 0.00013 41.1 10.1 88 304-394 19-114 (115)
142 KOG2160 Armadillo/beta-catenin 85.0 52 0.0011 40.5 18.9 181 294-479 92-287 (342)
143 cd03572 ENTH_epsin_related ENT 85.0 4.4 9.6E-05 42.4 8.7 98 863-965 11-119 (122)
144 PF05918 API5: Apoptosis inhib 84.7 15 0.00032 48.2 15.1 129 321-456 55-189 (556)
145 KOG1087 Cytosolic sorting prot 84.7 4.9 0.00011 51.5 10.7 107 861-976 13-124 (470)
146 PF08506 Cse1: Cse1; InterPro 84.7 7.8 0.00017 48.8 12.5 52 414-469 319-370 (370)
147 PF00790 VHS: VHS domain; Int 84.4 13 0.00028 40.2 12.5 96 294-396 18-119 (140)
148 KOG2549 Transcription initiati 84.1 18 0.0004 46.3 15.0 179 857-1045 211-419 (576)
149 PF08623 TIP120: TATA-binding 84.0 6.5 0.00014 43.6 9.9 91 362-454 5-115 (169)
150 PF08506 Cse1: Cse1; InterPro 83.9 89 0.0019 39.6 21.3 94 864-960 266-370 (370)
151 PF10521 DUF2454: Protein of u 83.7 13 0.00028 45.2 13.5 137 322-459 116-279 (282)
152 KOG4224 Armadillo repeat prote 83.3 15 0.00032 44.5 12.9 186 854-1043 252-448 (550)
153 cd03561 VHS VHS domain family; 83.2 19 0.00041 38.5 13.0 82 398-479 32-117 (133)
154 KOG4653 Uncharacterized conser 82.9 16 0.00034 49.0 14.1 180 856-1047 730-924 (982)
155 cd03572 ENTH_epsin_related ENT 82.6 6.7 0.00015 41.1 8.9 74 399-473 34-118 (122)
156 PF12830 Nipped-B_C: Sister ch 82.2 16 0.00036 41.4 12.8 114 364-477 6-122 (187)
157 cd03567 VHS_GGA VHS domain fam 82.2 18 0.00039 39.0 12.2 80 399-478 34-120 (139)
158 KOG0946 ER-Golgi vesicle-tethe 82.0 2.1E+02 0.0044 38.8 25.2 118 680-798 18-161 (970)
159 PF13001 Ecm29: Proteasome sta 81.9 1.5E+02 0.0032 39.3 23.2 116 927-1043 14-136 (501)
160 KOG2149 Uncharacterized conser 81.5 25 0.00053 43.8 14.4 110 330-439 63-177 (393)
161 KOG0168 Putative ubiquitin fus 81.3 63 0.0014 43.6 18.5 178 604-788 170-364 (1051)
162 PF12830 Nipped-B_C: Sister ch 81.1 4.8 0.0001 45.8 8.0 69 129-200 9-77 (187)
163 PLN03076 ARF guanine nucleotid 80.6 52 0.0011 49.3 19.6 182 297-478 1149-1380(1780)
164 PF08064 UME: UME (NUC010) dom 80.6 12 0.00025 38.5 9.8 73 414-489 26-98 (107)
165 PF10363 DUF2435: Protein of u 80.5 9.1 0.0002 38.2 8.6 84 857-949 7-90 (92)
166 PF04826 Arm_2: Armadillo-like 80.4 22 0.00048 42.4 13.5 168 292-464 61-252 (254)
167 COG5116 RPN2 26S proteasome re 80.2 6.6 0.00014 49.6 9.0 116 334-460 561-677 (926)
168 KOG2549 Transcription initiati 79.8 26 0.00055 45.1 14.1 176 294-477 216-418 (576)
169 KOG2149 Uncharacterized conser 79.2 8 0.00017 47.9 9.3 112 856-968 61-173 (393)
170 KOG1078 Vesicle coat complex C 79.2 2.5E+02 0.0054 38.1 33.6 54 729-787 477-531 (865)
171 KOG1087 Cytosolic sorting prot 79.0 7.9 0.00017 49.6 9.6 97 293-396 13-113 (470)
172 KOG0803 Predicted E3 ubiquitin 78.4 31 0.00067 49.6 15.8 189 291-479 47-268 (1312)
173 PF11864 DUF3384: Domain of un 78.4 1.7E+02 0.0037 38.3 22.0 133 653-787 187-329 (464)
174 PF10363 DUF2435: Protein of u 78.1 9.1 0.0002 38.2 7.8 80 405-486 5-84 (92)
175 PF08167 RIX1: rRNA processing 78.0 48 0.001 36.9 14.4 114 322-437 22-148 (165)
176 PF11640 TAN: Telomere-length 77.6 20 0.00043 39.5 11.1 93 857-949 8-120 (155)
177 KOG2199 Signal transducing ada 77.5 11 0.00025 45.9 9.6 79 893-971 43-124 (462)
178 KOG0414 Chromosome condensatio 77.4 3.4E+02 0.0073 38.6 32.7 143 323-474 917-1064(1251)
179 COG5240 SEC21 Vesicle coat com 77.4 2.4E+02 0.0051 36.8 25.7 64 718-787 488-554 (898)
180 smart00288 VHS Domain present 76.9 30 0.00066 37.0 12.0 82 398-479 32-116 (133)
181 PF08161 NUC173: NUC173 domain 76.6 9.3 0.0002 43.7 8.5 112 909-1021 14-125 (198)
182 PF08167 RIX1: rRNA processing 76.3 14 0.00031 41.0 9.8 105 290-396 30-144 (165)
183 cd08050 TAF6 TATA Binding Prot 75.3 33 0.00071 42.9 13.6 129 860-998 185-336 (343)
184 PF12231 Rif1_N: Rap1-interact 74.9 71 0.0015 40.5 16.6 134 909-1043 148-305 (372)
185 KOG2062 26S proteasome regulat 74.1 32 0.00069 45.5 12.8 160 860-1036 526-689 (929)
186 PF01603 B56: Protein phosphat 73.6 70 0.0015 41.1 16.2 203 290-499 138-344 (409)
187 PLN03076 ARF guanine nucleotid 73.4 4.6E+02 0.01 40.0 25.8 296 604-933 1140-1498(1780)
188 PF05918 API5: Apoptosis inhib 73.0 70 0.0015 42.2 15.9 131 339-478 36-166 (556)
189 KOG2011 Sister chromatid cohes 72.9 2E+02 0.0043 40.6 20.6 131 901-1037 293-431 (1048)
190 cd03565 VHS_Tom1 VHS domain fa 72.7 63 0.0014 35.0 13.2 96 294-396 14-116 (141)
191 PF05804 KAP: Kinesin-associat 72.5 47 0.001 45.3 14.7 167 306-476 471-651 (708)
192 PF10521 DUF2454: Protein of u 72.0 34 0.00073 41.6 12.3 159 21-181 85-278 (282)
193 KOG4524 Uncharacterized conser 71.9 4.1E+02 0.0089 37.1 42.3 63 907-969 560-622 (1014)
194 COG5116 RPN2 26S proteasome re 71.2 26 0.00057 44.6 10.9 163 297-478 476-654 (926)
195 KOG1949 Uncharacterized conser 70.8 31 0.00068 45.2 11.6 144 329-475 178-332 (1005)
196 PF14664 RICTOR_N: Rapamycin-i 70.2 3.1E+02 0.0066 34.9 24.1 171 865-1039 80-267 (371)
197 COG5098 Chromosome condensatio 69.7 34 0.00074 44.7 11.6 105 943-1049 306-423 (1128)
198 KOG1991 Nuclear transport rece 69.3 4.7E+02 0.01 36.6 35.8 194 290-491 381-589 (1010)
199 KOG3961 Uncharacterized conser 69.2 20 0.00042 40.6 8.3 113 854-968 115-242 (262)
200 KOG2011 Sister chromatid cohes 68.3 21 0.00046 49.6 10.2 80 1301-1381 297-378 (1048)
201 PF05536 Neurochondrin: Neuroc 68.3 71 0.0015 42.6 14.9 173 305-479 77-266 (543)
202 PF11698 V-ATPase_H_C: V-ATPas 68.2 32 0.00068 36.0 9.1 79 886-966 35-116 (119)
203 KOG4224 Armadillo repeat prote 67.7 55 0.0012 39.9 12.1 182 290-473 213-404 (550)
204 PF12074 DUF3554: Domain of un 67.7 3.2E+02 0.007 34.1 22.0 95 718-815 23-118 (339)
205 PF11698 V-ATPase_H_C: V-ATPas 66.2 28 0.0006 36.4 8.3 70 403-474 43-115 (119)
206 KOG1293 Proteins containing ar 65.6 2.7E+02 0.0059 37.0 18.4 132 339-473 391-532 (678)
207 COG5095 TAF6 Transcription ini 64.4 76 0.0017 37.7 12.1 105 602-716 199-321 (450)
208 KOG0889 Histone acetyltransfer 62.7 1E+03 0.023 38.3 29.2 169 753-968 979-1158(3550)
209 KOG4413 26S proteasome regulat 61.9 25 0.00054 42.0 7.8 89 386-474 63-157 (524)
210 KOG2062 26S proteasome regulat 61.6 60 0.0013 43.1 11.7 132 329-477 523-656 (929)
211 KOG2137 Protein kinase [Signal 61.3 1E+02 0.0023 41.2 14.0 167 318-499 381-552 (700)
212 smart00802 UME Domain in UVSB 61.1 51 0.0011 33.9 9.1 71 415-488 27-97 (107)
213 PF12765 Cohesin_HEAT: HEAT re 60.3 8.9 0.00019 32.3 2.9 26 444-469 17-42 (42)
214 PF08767 CRM1_C: CRM1 C termin 60.0 59 0.0013 40.3 11.3 134 301-436 43-198 (319)
215 COG5098 Chromosome condensatio 59.7 1.1E+02 0.0023 40.4 13.2 104 333-436 307-419 (1128)
216 PF05536 Neurochondrin: Neuroc 58.8 5.9E+02 0.013 34.1 27.6 151 893-1047 96-267 (543)
217 smart00802 UME Domain in UVSB 58.7 65 0.0014 33.1 9.4 76 894-971 10-89 (107)
218 PF08064 UME: UME (NUC010) dom 58.2 73 0.0016 32.7 9.8 76 895-974 11-92 (107)
219 PF11640 TAN: Telomere-length 57.4 80 0.0017 34.7 10.6 47 289-335 8-58 (155)
220 PF08161 NUC173: NUC173 domain 56.9 97 0.0021 35.6 11.5 106 341-451 16-123 (198)
221 KOG2137 Protein kinase [Signal 56.2 1.5E+02 0.0032 39.9 14.0 147 322-476 345-498 (700)
222 KOG2199 Signal transducing ada 55.2 1.4E+02 0.0029 37.2 12.5 90 399-488 41-132 (462)
223 PF12397 U3snoRNP10: U3 small 55.2 40 0.00087 35.3 7.6 83 1290-1375 5-95 (121)
224 KOG4413 26S proteasome regulat 54.6 4.8E+02 0.01 31.8 22.7 158 603-766 84-263 (524)
225 KOG0414 Chromosome condensatio 54.1 8.9E+02 0.019 34.8 59.4 140 893-1040 917-1063(1251)
226 KOG4825 Component of synaptic 53.6 1.1E+02 0.0023 38.3 11.3 198 600-803 392-610 (666)
227 KOG0413 Uncharacterized conser 53.3 8.3E+02 0.018 34.2 31.3 181 854-1039 473-683 (1529)
228 PF08623 TIP120: TATA-binding 53.2 43 0.00093 37.3 7.5 74 868-945 42-115 (169)
229 PF08767 CRM1_C: CRM1 C termin 52.6 3.4E+02 0.0075 33.6 16.2 115 364-478 69-198 (319)
230 COG5095 TAF6 Transcription ini 50.8 1.8E+02 0.0038 34.9 12.1 111 1169-1289 197-320 (450)
231 PF12765 Cohesin_HEAT: HEAT re 49.3 23 0.00051 29.8 3.7 34 159-192 9-42 (42)
232 cd08050 TAF6 TATA Binding Prot 49.3 1.8E+02 0.0039 36.5 13.1 111 1174-1290 182-302 (343)
233 PF00514 Arm: Armadillo/beta-c 49.3 25 0.00055 29.0 3.9 29 445-473 12-40 (41)
234 KOG1789 Endocytosis protein RM 48.5 1E+03 0.022 33.8 24.3 161 29-200 1743-1922(2235)
235 PF12074 DUF3554: Domain of un 48.2 1.6E+02 0.0034 36.8 12.6 94 367-460 23-122 (339)
236 KOG4199 Uncharacterized conser 46.7 4.5E+02 0.0098 32.3 14.7 175 297-481 119-320 (461)
237 KOG1822 Uncharacterized conser 46.6 1.1E+03 0.024 35.8 20.7 298 611-967 813-1129(2067)
238 PF08389 Xpo1: Exportin 1-like 46.2 1.4E+02 0.0031 31.8 10.4 123 321-469 22-148 (148)
239 PF04388 Hamartin: Hamartin pr 45.4 2.9E+02 0.0063 38.0 15.1 115 366-490 39-155 (668)
240 PF08569 Mo25: Mo25-like; Int 45.1 1.4E+02 0.0031 37.1 11.2 118 289-408 168-295 (335)
241 KOG0567 HEAT repeat-containing 45.0 6.2E+02 0.013 30.4 18.1 88 894-997 186-275 (289)
242 PF14664 RICTOR_N: Rapamycin-i 44.8 1.3E+02 0.0029 38.0 11.1 132 32-199 4-139 (371)
243 PF12783 Sec7_N: Guanine nucle 44.3 1.1E+02 0.0025 33.9 9.5 100 866-965 35-146 (168)
244 PF11701 UNC45-central: Myosin 44.2 43 0.00093 36.9 5.9 128 63-193 16-155 (157)
245 KOG1837 Uncharacterized conser 43.8 1.4E+03 0.03 34.1 25.9 79 1292-1370 1539-1621(1621)
246 KOG2753 Uncharacterized conser 43.2 7.3E+02 0.016 30.6 16.7 111 947-1058 117-232 (378)
247 PF01347 Vitellogenin_N: Lipop 43.2 93 0.002 42.3 10.3 134 325-469 431-584 (618)
248 PF11865 DUF3385: Domain of un 43.2 80 0.0017 35.0 7.8 54 913-966 105-158 (160)
249 PF12243 CTK3: CTD kinase subu 43.1 3.8E+02 0.0082 29.1 12.4 105 364-473 6-118 (139)
250 PF08045 CDC14: Cell division 43.0 2.7E+02 0.0058 33.4 12.4 89 1276-1365 111-209 (257)
251 PF14228 MOR2-PAG1_mid: Cell m 42.9 2.8E+02 0.0062 40.0 14.7 71 1208-1285 501-572 (1120)
252 KOG4825 Component of synaptic 42.8 1.9E+02 0.0041 36.3 11.2 217 16-234 398-638 (666)
253 PF03378 CAS_CSE1: CAS/CSE pro 42.3 2E+02 0.0043 37.3 12.3 207 844-1054 14-242 (435)
254 KOG1822 Uncharacterized conser 42.0 2.8E+02 0.0062 41.3 14.2 133 334-469 885-1027(2067)
255 PF08569 Mo25: Mo25-like; Int 42.0 8E+02 0.017 30.7 18.4 203 290-503 81-309 (335)
256 KOG1566 Conserved protein Mo25 41.9 4.4E+02 0.0095 32.3 13.7 179 14-196 23-240 (342)
257 cd00256 VATPase_H VATPase_H, r 41.9 4E+02 0.0087 34.4 14.6 148 324-474 227-425 (429)
258 KOG0946 ER-Golgi vesicle-tethe 41.6 1.4E+02 0.0029 40.4 10.3 88 113-200 106-198 (970)
259 PF12530 DUF3730: Protein of u 40.9 5.6E+02 0.012 30.2 15.0 118 338-459 97-217 (234)
260 KOG1517 Guanine nucleotide bin 39.3 1E+02 0.0022 42.7 8.9 67 410-476 606-673 (1387)
261 KOG2021 Nuclear mRNA export fa 39.1 1.2E+03 0.026 32.0 24.8 114 685-800 8-132 (980)
262 PF12333 Ipi1_N: Rix1 complex 38.1 1E+02 0.0022 31.5 7.0 37 401-437 9-45 (102)
263 smart00582 RPR domain present 37.6 2E+02 0.0042 30.0 9.4 99 370-473 4-106 (121)
264 KOG1517 Guanine nucleotide bin 37.3 2.6E+02 0.0055 39.2 12.0 97 869-967 573-673 (1387)
265 cd03562 CID CID (CTD-Interacti 35.0 3.6E+02 0.0078 27.8 10.8 69 402-470 36-104 (114)
266 PF03224 V-ATPase_H_N: V-ATPas 34.8 9.5E+02 0.021 29.5 16.7 155 289-460 109-274 (312)
267 COG3682 Predicted transcriptio 34.5 48 0.001 34.7 4.0 43 1640-1705 9-51 (123)
268 PF14225 MOR2-PAG1_C: Cell mor 34.2 9.1E+02 0.02 29.1 16.2 174 295-478 75-258 (262)
269 KOG0891 DNA-dependent protein 33.8 2.3E+03 0.051 33.8 39.3 305 676-1003 371-720 (2341)
270 PF12530 DUF3730: Protein of u 33.1 8.4E+02 0.018 28.8 14.7 135 57-198 6-152 (234)
271 PF00514 Arm: Armadillo/beta-c 32.4 62 0.0013 26.7 3.7 28 169-196 13-40 (41)
272 PF06371 Drf_GBD: Diaphanous G 31.8 58 0.0012 36.7 4.7 90 107-196 90-186 (187)
273 KOG1851 Uncharacterized conser 31.6 2.1E+03 0.045 32.5 24.8 75 402-476 1525-1600(1710)
274 KOG1924 RhoA GTPase effector D 31.3 4.5E+02 0.0098 35.6 12.4 100 382-492 269-378 (1102)
275 PF11841 DUF3361: Domain of un 30.4 6.1E+02 0.013 28.2 11.7 95 108-202 32-136 (160)
276 PF10441 Urb2: Urb2/Npa2 famil 30.1 9.4E+02 0.02 28.1 18.7 47 455-501 167-213 (223)
277 PF11707 Npa1: Ribosome 60S bi 29.9 5.4E+02 0.012 32.1 13.1 144 54-197 58-237 (330)
278 COG5656 SXM1 Importin, protein 29.9 1.6E+03 0.035 30.8 25.8 70 972-1043 461-530 (970)
279 smart00638 LPD_N Lipoprotein N 29.8 4.8E+02 0.011 35.1 13.7 136 894-1036 392-540 (574)
280 PF01347 Vitellogenin_N: Lipop 29.8 1.6E+03 0.034 30.5 23.3 113 863-997 500-617 (618)
281 PF03378 CAS_CSE1: CAS/CSE pro 29.7 6.5E+02 0.014 32.7 14.0 129 894-1028 25-176 (435)
282 KOG2213 Apoptosis inhibitor 5/ 29.4 8.1E+02 0.018 30.9 13.5 129 321-460 25-166 (460)
283 PF11841 DUF3361: Domain of un 29.0 8.4E+02 0.018 27.1 14.0 107 381-488 32-145 (160)
284 KOG2286 Exocyst complex subuni 28.9 1.5E+03 0.033 30.9 17.3 96 1292-1389 545-651 (667)
285 KOG1851 Uncharacterized conser 28.7 2.3E+03 0.049 32.1 27.2 120 927-1046 1473-1603(1710)
286 PF11701 UNC45-central: Myosin 28.6 4.9E+02 0.011 28.7 11.0 125 341-470 21-155 (157)
287 COG5231 VMA13 Vacuolar H+-ATPa 27.4 1.2E+03 0.027 28.6 16.6 68 1291-1358 356-426 (432)
288 PF03224 V-ATPase_H_N: V-ATPas 27.2 2.6E+02 0.0056 34.5 9.6 105 370-475 62-180 (312)
289 KOG1993 Nuclear transport rece 27.0 2.6E+02 0.0056 38.0 9.5 128 896-1026 527-669 (978)
290 KOG0567 HEAT repeat-containing 26.8 3E+02 0.0064 32.9 9.0 81 1265-1358 196-278 (289)
291 PF11935 DUF3453: Domain of un 26.8 1.1E+03 0.024 27.9 16.3 73 334-434 2-74 (239)
292 KOG1837 Uncharacterized conser 26.7 2.7E+02 0.0058 40.7 10.1 79 718-798 1542-1621(1621)
293 KOG2753 Uncharacterized conser 26.4 1.3E+03 0.029 28.6 15.2 94 378-474 118-216 (378)
294 PF01603 B56: Protein phosphat 25.8 1.5E+03 0.033 29.1 17.6 200 604-816 136-348 (409)
295 PF12333 Ipi1_N: Rix1 complex 25.7 3.7E+02 0.008 27.4 8.7 42 929-970 4-45 (102)
296 PF12422 Condensin2nSMC: Conde 25.6 9.1E+02 0.02 26.5 12.3 125 1174-1317 18-145 (152)
297 KOG2842 Interferon-related pro 25.6 1.2E+03 0.026 29.5 14.0 184 294-477 69-276 (427)
298 cd00256 VATPase_H VATPase_H, r 25.5 78 0.0017 40.6 4.6 58 139-196 365-424 (429)
299 PF12612 TFCD_C: Tubulin foldi 23.8 5E+02 0.011 29.6 10.4 120 362-488 3-132 (193)
300 PF03965 Penicillinase_R: Peni 23.7 84 0.0018 32.6 3.8 43 1639-1704 5-47 (115)
301 PF12030 DUF3517: Domain of un 23.6 8.7E+02 0.019 30.4 12.9 27 171-197 241-267 (337)
302 KOG1789 Endocytosis protein RM 23.1 6.6E+02 0.014 35.3 12.0 78 412-491 1821-1902(2235)
303 KOG3961 Uncharacterized conser 23.1 1.8E+02 0.0039 33.4 6.1 91 288-380 117-212 (262)
304 PF08389 Xpo1: Exportin 1-like 22.8 4.4E+02 0.0095 28.0 9.3 35 443-477 80-118 (148)
305 TIGR02289 M3_not_pepF oligoend 22.3 1.1E+03 0.024 31.6 14.8 36 1328-1363 141-176 (549)
306 PF01417 ENTH: ENTH domain; I 21.7 4.2E+02 0.0092 27.8 8.6 85 387-472 21-119 (125)
307 PF12422 Condensin2nSMC: Conde 21.1 4.5E+02 0.0098 28.9 8.9 28 1011-1038 117-145 (152)
308 PF12397 U3snoRNP10: U3 small 20.7 4.4E+02 0.0096 27.4 8.5 72 401-476 4-76 (121)
309 PF12612 TFCD_C: Tubulin foldi 20.7 7.2E+02 0.016 28.3 10.9 129 23-158 19-159 (193)
310 smart00638 LPD_N Lipoprotein N 20.5 6.7E+02 0.014 33.8 12.4 121 344-479 375-514 (574)
311 KOG0889 Histone acetyltransfer 20.2 6.8E+02 0.015 40.2 12.6 156 322-479 981-1160(3550)
312 KOG2022 Nuclear transport rece 20.2 2.5E+03 0.055 29.6 37.5 108 604-714 465-579 (982)
No 1
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-51 Score=531.23 Aligned_cols=745 Identities=25% Similarity=0.300 Sum_probs=568.7
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHH-hcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHH
Q 000167 607 VGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLC 685 (1972)
Q Consensus 607 ~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L-~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~i 685 (1972)
...+.+..|+.|.++...+...++.....+.....+++.. ...++|+..|++|..-.+.++..-.
T Consensus 11 ~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~-------------- 76 (815)
T KOG1820|consen 11 DSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKR-------------- 76 (815)
T ss_pred chhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhccccc--------------
Confidence 3347888999999999999998888654433334444433 2335678888777665554443211
Q ss_pred HHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHh
Q 000167 686 LLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKD 765 (1972)
Q Consensus 686 l~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~ 765 (1972)
..+.| ...+++..+....+...+++.++.. ...|.||....++..+..++.+||...++++.+++.+..
T Consensus 77 -----~~~~~-----~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~ 145 (815)
T KOG1820|consen 77 -----VNIRD-----TKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGS 145 (815)
T ss_pred -----ccccC-----cchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcc
Confidence 11122 2222333333333444555555555 478999999999999999999999988888888877665
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhh-cccHHHHHHHHHHHhcCCCC----CCCC-----------------
Q 000167 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVV----------------- 823 (1972)
Q Consensus 766 ~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~-~lkp~ll~~Le~efek~~~~----~~~~----------------- 823 (1972)
+ . +.+||.++.++++.+|++.|..+..++. .-.+.++..+...+.+.... ..+.
T Consensus 146 l-~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~ 221 (815)
T KOG1820|consen 146 L-A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQL 221 (815)
T ss_pred c-c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcc
Confidence 4 3 8899999999999999999998887663 33344455554444333210 0000
Q ss_pred --CCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHH
Q 000167 824 --PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (1972)
Q Consensus 824 --p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~ 901 (1972)
+.+.++...+......+..|.+||+||+.++++.|...+.+++|++|+||++.+..++++....+....++.+...++
T Consensus 222 ~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 222 EKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred cccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 000000000000001134578999999999999999999999999999999999999997643455666678888888
Q ss_pred hccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000167 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1972)
Q Consensus 902 ~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~ 981 (1972)
.++.|+|.+|+..|+.+|+.||.+||..|.+|...++|.|+.+++|+|+.+|+++..|+++|+..+++..+.+.+.++++
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALK 381 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhccCCCC----CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000167 982 DAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (1972)
Q Consensus 982 ~~~~~~~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~ 1057 (1972)
++ ||+.|.+++.|+.+++...... .....+++.+++..+|++.+||++|.+++.++|+++|++.+.+++.++++
T Consensus 382 ~k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 382 GK--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred CC--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 87 7999999999999999988741 23344455589999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCcCCCCCCCCCCCCcccccchhhhhhhhcc
Q 000167 1058 PALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL 1132 (1972)
Q Consensus 1058 ~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (1972)
..+..+.+.+.+.-.....+.+++++..+.....+..++ .......++..+|.+.+...++ ...+. ....+.+
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~-~~~~~-~~~~~~~ 537 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSS-RKIPE-AAEAPKL 537 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCcccccccc-cCCcc-hhhcccc
Confidence 644444444433211111222222221110000000000 0000001111112121111100 01111 1111211
Q ss_pred ccCCCChHHhh----hhhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCcchhhHHHH
Q 000167 1133 NVKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV 1208 (1972)
Q Consensus 1133 ~~~~~~k~~R~----~~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~~i~~ 1208 (1972)
.+..+++|. +..+.+|.+..+..+..+ +|...++......||+.||+.|.++++.++.....+..++.++
T Consensus 538 --~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~ 611 (815)
T KOG1820|consen 538 --QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKE----PSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSI 611 (815)
T ss_pred --ccccccchhhhhhhhccCccccccchhhhhc----ccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchH
Confidence 344567775 466778998877765544 4778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhCCChHHHHHHHHHHHHHHhhcCC
Q 000167 1209 LDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS 1288 (1972)
Q Consensus 1209 lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~Gd~k~~vr~~v~~il~~~~~v~~ 1288 (1972)
.|++++|+++||+++|+.+..+.++++...|+.+...++.++..|...|.|++..+.|..++.+++.++.+.+....++.
T Consensus 612 ~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s 691 (815)
T KOG1820|consen 612 QDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLS 691 (815)
T ss_pred HhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHHhCHHHHH
Q 000167 1289 ATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 1368 (1972)
Q Consensus 1289 ~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~ 1368 (1972)
+.+..|++.+++..||.++|.+|++.+..++..-|.....-.+.+..++....+.|..+|.++.+++...|.+.|+.+|+
T Consensus 692 ~~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (815)
T KOG1820|consen 692 VLMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWK 771 (815)
T ss_pred ccccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHH
Confidence 99999999999999999999999999999999999876444567899999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHhHHHHHHhhhh
Q 000167 1369 YVGKLTDAQKSMLDDRFKWKVR 1390 (1972)
Q Consensus 1369 ~vg~ls~~~~s~l~er~kr~~~ 1390 (1972)
..+.+.+.++++++.+|++..+
T Consensus 772 ~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 772 ISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred HHHHhhHHHhhhHHHhcCcccc
Confidence 9999999999999999998654
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=7.4e-42 Score=440.59 Aligned_cols=747 Identities=20% Similarity=0.232 Sum_probs=499.8
Q ss_pred hcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hhHHHHHHH
Q 000167 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVCDAI 98 (1972)
Q Consensus 20 l~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~-~~~~v~~~L 98 (1972)
+..+.|+.|.++|. +++.|+|...|+.+ .++..|....+..... -..-.+-..
T Consensus 14 l~~~~w~~~~~~~~-------------------------ql~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~~ 67 (815)
T KOG1820|consen 14 LCSQSWKNRLEAWK-------------------------QLLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLSF 67 (815)
T ss_pred hhhhhhhhhHHHHH-------------------------HHhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeeccc
Confidence 77777777777665 45678899999999 8888887776543221 122234445
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhh
Q 000167 99 AAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177 (1972)
Q Consensus 99 veK~l~-~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll 177 (1972)
.++||. -++.+++...++++.+-..++.+.+++.+...+.-|.||..++++..+..++.+||...++++.+++.+..++
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~ 147 (815)
T KOG1820|consen 68 GLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA 147 (815)
T ss_pred hhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc
Confidence 678887 4788899999998888777888999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCC-CCCCcchhhhhhHhhhhhccccCCCC
Q 000167 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGP 256 (1972)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~-~~P~R~~rs~~~~~~~~~a~~~~~~~ 256 (1972)
|++||.++..++++||||+|.. ++.+++....+.++.++...+.+.... ....|+.-+.+..........+..+.
T Consensus 148 ---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~ 223 (815)
T KOG1820|consen 148 ---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEK 223 (815)
T ss_pred ---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccc
Confidence 9999999999999999999985 556655444444444444443332211 01111111111000000000000000
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHH
Q 000167 257 GPS--EESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKK 332 (1972)
Q Consensus 257 ~~~--~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k--i~~~~y~~l~~~L~k 332 (1972)
... ....+.....+|.||+.+++||+++++ .+|...+.+++|++|+|||+.+..++..++ +..+.++.+...++.
T Consensus 224 ~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 224 PERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred cccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 000 001111122278999999999999999 699999999999999999999999886666 444556666666666
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000167 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1972)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l 412 (1972)
+..|+|++|+..|++||+.||.+||..|.+|+..++|.+|+++||+|..+++++..|+++++.. +++.++.+.|..++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEAL 380 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHh
Confidence 7779999999999999999999999999999999999999999999999999999999999984 89999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChh-HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHH
Q 000167 413 KNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDV 491 (1972)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~ 491 (1972)
++|||++|.+|..|+.+++...++. .....++.++|.+++..+|++++||.||.++++++++++|++.++.++..+++.
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 9999999999999999999988743 233567999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccc-cccccccccCCCCCCCCCCCCCCCCCCC-CCC-----
Q 000167 492 RRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSF-VRKSAASMLSGKRPVSAAPASKKGGPVK-PSA----- 564 (1972)
Q Consensus 492 ~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~-v~~~~~s~~~~~~P~~~~~~s~k~~~~k-~g~----- 564 (1972)
-+..+.|.+...-.......++..++. +....+.. ++.... ....++.+. .++.|++ +..
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~---~~~~~p~~~---~a~vps~~ss~~~~~~ 527 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAPD-------PQVEKLKKVVKVGLS---NFSGLPKNS---AASVPSKLSSANSSRK 527 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCCC-------ccccccceecccccc---cCCCCCCCc---cccCCCcccccccccC
Confidence 444555544321000000000101110 00000000 000000 000000000 0001111 000
Q ss_pred CCCC--CCCCCCC-CCCCCC-----CCCCCC-CCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccc-
Q 000167 565 KKDG--SGKQETS-KLTEAP-----EDVEPS-EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN- 634 (1972)
Q Consensus 565 ~~~~--~~~~~~s-~~~~~~-----~~~~~~-~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~- 634 (1972)
.+.. .+...++ +..... ..+... ....++..+.....++......+.+.+.+.-.++++.+...-.+...
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~ 607 (815)
T KOG1820|consen 528 IPEAAEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKE 607 (815)
T ss_pred CcchhhccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccc
Confidence 0000 0000000 000000 000000 11223444334455667778889999999999999988865444222
Q ss_pred cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC----CchhhHHHHHHHHHhhhcchh--hhHHHHHHHHH
Q 000167 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLTT 708 (1972)
Q Consensus 635 ~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~----~~~~~~~~il~~LveKlgd~K--~r~~a~~~L~~ 708 (1972)
.......++.|+.. +|.|+|..+....++++......... ..........+-+..+.|..+ .+..-..+...
T Consensus 608 ~~~~~~~~l~~~~l--r~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~ 685 (815)
T KOG1820|consen 608 YTSIQDLLLEWLVL--RFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEA 685 (815)
T ss_pred cchHHhhhhHHHHH--HhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhh
Confidence 21223456667643 68999999999888888765543211 010111111122222444322 23333334444
Q ss_pred HHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000167 709 FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1972)
Q Consensus 709 l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (1972)
..+..+.......+.+.+ ..++-.++.+++..+..++..-|...+....+....... ..+.+..+|.++..++...|.
T Consensus 686 s~~v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 763 (815)
T KOG1820|consen 686 SFEVLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPFD 763 (815)
T ss_pred hhhhccccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhccccc-ccccchhhhhhhhcccccccc
Confidence 455555555556666664 678888899999888877776666433222233333333 677888999999999999999
Q ss_pred hhChhHHhhhhcccHHHHHHHHHHHhcC
Q 000167 789 FVGPDIKGFLADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~efek~ 816 (1972)
+.|+....+.....+.+...++..|.+-
T Consensus 764 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 791 (815)
T KOG1820|consen 764 FLPDPSWKISILQADTDKSRIEKMFPKE 791 (815)
T ss_pred cccchHHHHHHHhhHHHhhhHHHhcCcc
Confidence 9999998888888899999999998764
No 3
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.97 E-value=1.8e-26 Score=285.13 Aligned_cols=922 Identities=17% Similarity=0.187 Sum_probs=574.1
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCCC-CchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHH
Q 000167 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDP-KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (1972)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~d~-~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~ 93 (1972)
-|.|++++++-..|.+|..+|++.++...-. ++..+.+...++.|.+.|+|..||..|+.|+..++.+.++. ....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHH
Confidence 6789999999999999999999999863111 12235566788899999999999999999999999887653 4667
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHhhh------hhhhHHHHHHHHhhcCChh------hHHHHHHHHHHHHHHhC
Q 000167 94 VCDAIAAKCLTGRPKTVEKA-QAVFMLWVELE------AVDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFG 160 (1972)
Q Consensus 94 v~~~LveK~l~~k~~~k~~a-~~~ll~~~E~~------~~~~v~~~L~~~~~~KnpK------v~~~~l~~l~~~l~~fG 160 (1972)
++..|+.+.++++.+.|+.+ +.+.+...++. -...|+..+++.+..-+-+ +.+++++++...+.+||
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 88888888888899999986 88888888874 1246788888777766665 89999999999999999
Q ss_pred CCccChh-HHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhH---HHhhhC-hHHHHHHHHHHH---Hhc---cC
Q 000167 161 AKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKM-RDTMKKELEVEL---VNV---SG 229 (1972)
Q Consensus 161 ~~~~~~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~---~l~~~L-k~~q~keLe~~f---~k~---~~ 229 (1972)
.-..+.. .+++.+..-++.....||+.|+.+++.+..+++.++... .|.++| ++.|..++..-+ ..+ .|
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9776664 489999999999999999999999999998888654322 222333 233333332221 111 11
Q ss_pred C--------CCCC--cchhhh--hhHhhhh------hc-----cccCC--------------CCCCCCCCCCCCCCCCCC
Q 000167 230 T--------ARPT--RKIRAE--QDKELGQ------EL-----ISEDV--------------GPGPSEESTADVPPEIDE 272 (1972)
Q Consensus 230 ~--------~~P~--R~~rs~--~~~~~~~------~a-----~~~~~--------------~~~~~~~~~~~~~~~iD~ 272 (1972)
. ..|. .|..+. .+++..+ |+ |.+.. ..+|+-..+.+ +|.|.
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~--eDed~ 323 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE--EDEDA 323 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc--cchhh
Confidence 1 1110 011000 0111100 00 11100 01111000000 00000
Q ss_pred CCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHH
Q 000167 273 YELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGN 351 (1972)
Q Consensus 273 ~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~ 351 (1972)
...-|..| . ..++-|+..+|-.|+.|++|++.+.+++ +...+.+.-|..+.+.|..+++|-.-+|....+++.-.
T Consensus 324 ~~~ed~eD--d--e~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 324 MFLEDEED--D--EQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIA 399 (1233)
T ss_pred hhhhcccc--c--hhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00000000 0 0025677788999999999999999976 56667777788999999999996666677777776666
Q ss_pred HHHHhhh----------------c-----hhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--c--CCChHhHHH
Q 000167 352 LARGLRT----------------H-----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--G--CLNLVDVVE 406 (1972)
Q Consensus 352 La~~L~~----------------~-----f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~--~~~l~~il~ 406 (1972)
+.+..+. . ....+..++..+-+.+++|+...+.....-|..++.. + ..++..++|
T Consensus 400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvp 479 (1233)
T KOG1824|consen 400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVP 479 (1233)
T ss_pred HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccch
Confidence 6543321 1 2244556777777778888888888888888888765 1 245677889
Q ss_pred HHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch-----
Q 000167 407 DVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR----- 479 (1972)
Q Consensus 407 ~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~----- 479 (1972)
.|.-.+.+|+ .+.|..++.|+..++..+++..|.++++.+.|.+..++.|+.+.|-..|.-....+.+++...
T Consensus 480 gI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~ 559 (1233)
T KOG1824|consen 480 GIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSS 559 (1233)
T ss_pred hhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCcc
Confidence 9999998877 689999999999999999999999999999999999999999999999988888888887642
Q ss_pred -hHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000167 480 -PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1972)
Q Consensus 480 -~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~ 558 (1972)
...+++..+-....++++... ....|+.-+.+.++.. .
T Consensus 560 ~d~~~~v~~m~~~tl~rL~a~d-----------------------------~DqeVkeraIscmgq~-------i----- 598 (1233)
T KOG1824|consen 560 FDASPYVKTMYDCTLQRLKATD-----------------------------SDQEVKERAISCMGQI-------I----- 598 (1233)
T ss_pred CCCChhHHHHHHHHHHHHhccc-----------------------------ccHHHHHHHHHHHHHH-------H-----
Confidence 245566666555444442210 0112333222221100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHh----hc--------c---CcHHHHHhhhcCChHHHHHHHH
Q 000167 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL----GS--------L---IPADTVGQLKSAVWKERLEAIS 623 (1972)
Q Consensus 559 ~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~----~~--------l---l~~~l~~~L~s~~Wk~Rl~a~e 623 (1972)
+.-++-.+. -....-..-.+....++|.--+...+ .+ . +-+++...|...+-+.|++.+.
T Consensus 599 ----~~fgD~l~~-eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~ 673 (1233)
T KOG1824|consen 599 ----ANFGDFLGN-ELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLT 673 (1233)
T ss_pred ----HHHhhhhhh-hhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 00000000000001122221111000 00 0 1156667777778888998888
Q ss_pred HHHHHHHhccccch--hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHH
Q 000167 624 SLRQQVEAVQNLDQ--SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAH 701 (1972)
Q Consensus 624 ~L~~~v~~~~~~~~--~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~ 701 (1972)
.+..+++......+ ..+.++.-+. |-+.|+..+|.+.++.++..++...+...-...+.+++.++.-+..+-+...
T Consensus 674 a~~~L~~~~~~~~~~~~~e~vL~el~--~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~ 751 (1233)
T KOG1824|consen 674 ALDKLVKNYSDSIPAELLEAVLVELP--PLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGG 751 (1233)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccch
Confidence 88888877433211 2233333221 3468999999999999999988765543223445666666666666655555
Q ss_pred HHHHHHHHHhhc----Chh--H--------------------------------------------HHHHHHHhhhh-CC
Q 000167 702 AMKCLTTFSEAV----GPG--F--------------------------------------------IFERLYKIMKD-HK 730 (1972)
Q Consensus 702 a~~~L~~l~e~~----~~~--~--------------------------------------------vl~~l~~~l~~-~K 730 (1972)
+..++..+.++. .++ | +...+...+.. ..
T Consensus 752 al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s 831 (1233)
T KOG1824|consen 752 ALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKS 831 (1233)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCC
Confidence 555544443321 011 0 01111111000 11
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHH
Q 000167 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810 (1972)
Q Consensus 731 npKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le 810 (1972)
+-.++.-++..+.++=..++. .....+-..+.+. +++++.+|+.||.-++|.+-. |+ +..|| |-++.+|+
T Consensus 832 ~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f~sp~edvksAAs~ALGsl~v--gn-l~~yL----pfil~qi~ 901 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSAASYALGSLAV--GN-LPKYL----PFILEQIE 901 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHHHHHHhhhhhc--Cc-hHhHH----HHHHHHHh
Confidence 122222222222222111111 1123344556666 999999999999999999853 32 22232 44444444
Q ss_pred HH----------HhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000167 811 AE----------YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKI 880 (1972)
Q Consensus 811 ~e----------fek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~l 880 (1972)
.+ |..+-. +.+. +-..|.+ .+|..-|++.++...--.|.--.|.++++
T Consensus 902 sqpk~QyLLLhSlkevi~----------~~sv---------d~~~~~v---~~IW~lL~k~cE~~eegtR~vvAECLGkL 959 (1233)
T KOG1824|consen 902 SQPKRQYLLLHSLKEVIV----------SASV---------DGLKPYV---EKIWALLFKHCECAEEGTRNVVAECLGKL 959 (1233)
T ss_pred cchHhHHHHHHHHHHHHH----------Hhcc---------chhhhhH---HHHHHHHHHhcccchhhhHHHHHHHhhhH
Confidence 32 111000 0000 0011111 12444455666555544465555555555
Q ss_pred HHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Q 000167 881 LEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960 (1972)
Q Consensus 881 l~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL 960 (1972)
+. .....|...|+.++.....+.+..++..+.....--...++++.+..+..++..+.|....||+.|..++
T Consensus 960 ~l--------~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 960 VL--------IEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred Hh--------CChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 43 2237899999999876666677777777766666666788999999999999999999999999999999
Q ss_pred HHHHHhcC--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000167 961 DAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (1972)
Q Consensus 961 ~~i~~~~~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~ 1038 (1972)
+..+.+-+ +..++|.+.+.|.++ ..+|.+++.-.. +.| +++-.|..-++|++|++||-+
T Consensus 1032 nSaahNKpslIrDllpeLLp~Ly~e---TkvrkelIreVe---------------MGP-FKH~VDdgLd~RKaaFEcmyt 1092 (1233)
T KOG1824|consen 1032 NSAAHNKPSLIRDLLPELLPLLYSE---TKVRKELIREVE---------------MGP-FKHTVDDGLDLRKAAFECMYT 1092 (1233)
T ss_pred HHHHccCHhHHHHHHHHHHHHHHHh---hhhhHhhhhhhc---------------ccC-ccccccchHHHHHHHHHHHHH
Confidence 99998865 678999999999865 346777664431 222 455678889999999999999
Q ss_pred HHHH-cChhHHHHHh
Q 000167 1039 ILRA-GGQETIEKNL 1052 (1972)
Q Consensus 1039 l~~~-~G~~~~~~~l 1052 (1972)
+... ++.-.+..++
T Consensus 1093 LLdscld~~dit~Fl 1107 (1233)
T KOG1824|consen 1093 LLDSCLDRLDITEFL 1107 (1233)
T ss_pred HHHhhhhhccHHHHH
Confidence 8854 4444444444
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=8e-16 Score=199.21 Aligned_cols=880 Identities=16% Similarity=0.180 Sum_probs=474.0
Q ss_pred hHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhh--
Q 000167 49 RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE-- 124 (1972)
Q Consensus 49 ~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~--~k~~~k~~a~~~ll~~~E~~-- 124 (1972)
.|.++...+-+.+++.|+.-+|.|+-.|..+....+.....|..++. .|..+|++ +.+ +|-.|...+..|++.-
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~-~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL-RLFSQTMTDPSSP-VRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH-HHHHHhccCCcch-HHHHHHHHHHHHHHHhcc
Confidence 57777888889999999999999999999998887665555655555 46678887 455 9988888777777652
Q ss_pred hhh------hHHHHH----HHHhhcCChhhHHHHHHHHHHHHHHhCCCccC--hhHHHHhhhhhhcCC--ChhHHHHHHH
Q 000167 125 AVD------VFLDVM----EKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKG 190 (1972)
Q Consensus 125 ~~~------~v~~~L----~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~--~k~il~~l~~ll~~~--d~~VR~~a~~ 190 (1972)
+.. .++..+ -.....-+-+....++.+|.+++...+. .+. +..++....++.++. |..+|..|..
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 121 222222 2223455666778889999988887665 332 345666666776665 7889999999
Q ss_pred HHHHHHHhhCCchhhH--HHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCC--CCCCCCCCC
Q 000167 191 LTLELCRWIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG--PSEESTADV 266 (1972)
Q Consensus 191 l~~ely~~lG~~~l~~--~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~--~~~~~~~~~ 266 (1972)
+++.+.++. +...|. .+...|-++.++.. ++ ...+. .+++.. ++
T Consensus 272 ~ivs~~e~A-p~~~k~~~~~~~~lv~~~l~~m-----------te-------------------~~~D~ew~~~d~~-de 319 (1075)
T KOG2171|consen 272 FLVSLSEYA-PAMCKKLALLGHTLVPVLLAMM-----------TE-------------------EEDDDEWSNEDDL-DE 319 (1075)
T ss_pred HHHHHHHhh-HHHhhhchhhhccHHHHHHHhc-----------CC-------------------cccchhhcccccc-cc
Confidence 999999882 111110 01111111211110 00 00000 000000 01
Q ss_pred CCCCCCCCCC-----------CcccccccCcccchhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHh
Q 000167 267 PPEIDEYELV-----------DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLI 334 (1972)
Q Consensus 267 ~~~iD~~dl~-----------~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l 334 (1972)
++.-++|.+. ++..|+..+= +.+...+.+.+|++|++||..|..+.. ..+...+.+..+++.+.+.+
T Consensus 320 d~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 320 DDEETPYRAAEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL 398 (1075)
T ss_pred ccccCcHHHHHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Confidence 1112232211 2223332221 344456799999999999999999884 44544457889999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH-HHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC------hHhHHH
Q 000167 335 TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP-VLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN------LVDVVE 406 (1972)
Q Consensus 335 ~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp-~LL~klkdk-k~~V~~aa~~aL~al~~~~~~~------l~~il~ 406 (1972)
+|.+..|+..||++|+.++..+.+.++.+....+| .|+..+.+. ++.|..++..|+..+... |.. ++.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 99999999999999999999999999988777666 555555443 557888899999988876 422 455555
Q ss_pred H-HHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC----hHHHHHHHHHHHHHHHHhCchhH
Q 000167 407 D-VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVGMRPL 481 (1972)
Q Consensus 407 ~-l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~----~~VR~aA~~~l~~l~~~~ge~~~ 481 (1972)
. +...+++.++.+|.+++..++.+..... ..|.+|.+.++|.|.++|...+ .++|-...+|++.+...+|.+.|
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 3 3334567889999999999998766544 4578999999999999995444 68888889999999999998778
Q ss_pred HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCC
Q 000167 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561 (1972)
Q Consensus 482 ~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k 561 (1972)
.++...|=.. .++..++......|..+ . .-+.-+- .-+--...+..--|.- -|+--+....+
T Consensus 557 ~~~a~eliql-------l~~~~~~~~~~dd~~~s-------y--~~~~war-mc~ilg~~F~p~L~~V-mppl~~ta~~~ 618 (1075)
T KOG2171|consen 557 LPLAEELIQL-------LLELQGSDQDDDDPLRS-------Y--MIAFWAR-MCRILGDDFAPFLPVV-MPPLLKTARLD 618 (1075)
T ss_pred hHhHHHHHHH-------HHhhcccchhhccccHH-------H--HHHHHHH-HHHHhchhhHhHHHHH-hHHHHHhhccC
Confidence 7776654221 11111111110100000 0 0000000 0000000000000000 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHH-------HHhhhcCChHHHHHHHHHHHHHHHhccc
Q 000167 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADT-------VGQLKSAVWKERLEAISSLRQQVEAVQN 634 (1972)
Q Consensus 562 ~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l-------~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~ 634 (1972)
+ ...++.++.++...+.-+-+. .=++..+-.-++..|.+.|..+-.....
T Consensus 619 p-----------------------~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~ 675 (1075)
T KOG2171|consen 619 P-----------------------DVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKE 675 (1075)
T ss_pred C-----------------------cccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhh
Confidence 0 001111111111111111110 0112233344445555555544333211
Q ss_pred -cchhHHHHHHHHh--cCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHh
Q 000167 635 -LDQSVEILVRLVC--MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSE 711 (1972)
Q Consensus 635 -~~~~~~~lv~~L~--~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e 711 (1972)
-.++.+-++..+. -+=.|.| -|...+++. +|.++...--.-.+..+ .+..+
T Consensus 676 ~F~pYve~v~~l~v~~l~f~fhd---gVR~aa~~~-------------------~p~ll~~~~~A~~~~p~--~l~~l-- 729 (1075)
T KOG2171|consen 676 AFAPYVEQVVELMVPLLKFYFHD---GVRKAAAES-------------------MPQLLTCALKACQGGPE--YLKQL-- 729 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhh---HHHHHHHHH-------------------HHHHHHHHHHHhccChH--HHHHH--
Confidence 0111111111000 0001111 133333333 33333110000000000 00000
Q ss_pred hcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhC
Q 000167 712 AVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1972)
Q Consensus 712 ~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G 791 (1972)
-+++++.++..+..-..+-+..+.++.+.+.++.+|..++....+-..+... + ..+ ..-+......-+
T Consensus 730 ---~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~-~----~~~----l~~~~~~~~r~~ 797 (1075)
T KOG2171|consen 730 ---WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGL-L----AQL----LQHFKRMQDRQE 797 (1075)
T ss_pred ---HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH-H----HHH----HHHHHHHHhhhh
Confidence 1123344444443445677888889999999999997665533322221111 0 000 000000000000
Q ss_pred hhHH-hhhhcccH---HHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCC-
Q 000167 792 PDIK-GFLADVKP---ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPD- 866 (1972)
Q Consensus 792 ~~l~-~~L~~lkp---~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~- 866 (1972)
.+.. ++-.+... .+=..|.+++.++.. +-+.. .+ .+..| .+..+-+-+...+.+++
T Consensus 798 ~~~eed~d~~eee~~~e~d~~ll~~i~~i~~-------~l~k~-------~k--~~f~p---~f~~~~p~iv~~l~~~~~ 858 (1075)
T KOG2171|consen 798 EDDEEDDDIEEEEDLDEQDAYLLDAISDILA-------ALAKA-------LK--GSFLP---FFENFLPLIVKLLKSKKT 858 (1075)
T ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHHHHH-------HHHHH-------cc--ccccH---HHHHHHHHHHHHHhcCCc
Confidence 0000 00000000 000111111111100 00000 00 00111 12234455566666654
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhC
Q 000167 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946 (1972)
Q Consensus 867 Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~ 946 (1972)
|. |.=|+-.+.+++..+.+...+. +..+...+...+.|...-|++.|..-+|.+|.--|..+.+.+...+|.++..+.
T Consensus 859 ~~-r~~av~~~~d~ie~~~~a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq 936 (1075)
T KOG2171|consen 859 VA-RQWAVCIFDDLIEGCGEASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ 936 (1075)
T ss_pred HH-HHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence 77 9999999999998654433333 477888889999999999999999999999999999999999999999998887
Q ss_pred CCc---HHHHHHHHHHHHHHHHh---c----CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CC--Chh
Q 000167 947 DNK---KHMRECTLTVLDAWLAA---V----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FP--DAA 1011 (1972)
Q Consensus 947 D~k---~~Vr~Aa~~aL~~i~~~---~----~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~--~~~ 1011 (1972)
... ..-+.+..+++.++.+- . +++.++|.++..|-... +-+.-..+..+|...++.... .+ ...
T Consensus 937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~i 1015 (1075)
T KOG2171|consen 937 PPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNNQNI 1015 (1075)
T ss_pred ChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCcccc
Confidence 543 33444555555555543 3 36778887777764221 223445577888888876544 11 122
Q ss_pred hhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHH
Q 000167 1012 HLLKP-ASIAMTDKSSDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1067 (1972)
Q Consensus 1012 ~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~-G~~~~~~~l~~L~~~~~~~I~~~l 1067 (1972)
+.+.. +...+.+.+-+-|..+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1016 p~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1016 PKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred hHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 32322 444455554444444443443333333 344677778889999888887754
No 5
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.86 E-value=7e-21 Score=222.24 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=148.3
Q ss_pred cCcccchhhhhccCChHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHhcccCHHHHHHHHHHHHHHHHHhh
Q 000167 284 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (1972)
Q Consensus 284 kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~--ki~~~~y~~l~----~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 357 (1972)
.+. +.|+++..+.+|++|.+||+.|+.++.+. ......|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444 46777778999999999999999988544 22222333323 356677889999999999999999999999
Q ss_pred hchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-
Q 000167 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 435 (1972)
Q Consensus 358 ~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~i-l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~- 435 (1972)
..|++|+..++|.|+++++++|+.|++++..||.+++.+ |.....+ ++.+..+++||||.+|..++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999987 3314566 7888889999999999999999999999998
Q ss_pred -hhHHHH--hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHH
Q 000167 436 -KAAVLK--VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (1972)
Q Consensus 436 -~~~l~~--~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI 496 (1972)
...+.. .++.+++.+.++++|++++||++|+++|+.+++++|++ ...++..||+..||.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H---------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccC
Confidence 334432 35889999999999999999999999999999999998 5778899999888765
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.1e-15 Score=191.18 Aligned_cols=834 Identities=17% Similarity=0.183 Sum_probs=505.6
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh-hhh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ 366 (1972)
.+...+-+.+-..|++|-+.+..+...++ +...|...+. -.|..++..|+..+..+..+.=+..... -.+
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 34455677888889999999988765443 6667777777 7788899999999888888755555433 335
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000167 367 LLPVLLEKL-KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1972)
Q Consensus 367 llp~LL~kl-kdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (1972)
+-..||..+ +|..+.||.+....+..++++ ..-.-+++++-+..+.++.|++.|+.++..|..+....+. .+.++++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~ 158 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLD 158 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHH
Confidence 556666664 899999999999999999987 1114567889999999999999999999999887765543 3567889
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC-chhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCC
Q 000167 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1972)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g-e~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (1972)
.+.+.+.+|+.|....||-+|.++++++..... +...-+.+..+-|.-..-+.+.+...
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~-------------------- 218 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG-------------------- 218 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc--------------------
Confidence 999999999999999999999999999998885 32222222222222111111111000
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000167 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1972)
Q Consensus 524 s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (1972)
.++
T Consensus 219 -------------------------------------------------------------------d~~---------- 221 (1075)
T KOG2171|consen 219 -------------------------------------------------------------------DDD---------- 221 (1075)
T ss_pred -------------------------------------------------------------------chH----------
Confidence 000
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCC-----
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF----- 677 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~-~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~----- 677 (1972)
.=..+++.|.+++...... .+....++.+....-+=++-+-.+...+|+++..+++..+..
T Consensus 222 -------------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 222 -------------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred -------------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 0011222223333322111 112222222211111224555578889999999888864432
Q ss_pred --chhhHHHHHHHHHhhhcch--------------hhhHHHHHHHHHHHhhcChhHHHHHHHHhh---hhCCChHHHHHH
Q 000167 678 --PKKCVVLCLLGISERVADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEG 738 (1972)
Q Consensus 678 --~~~~~~~il~~LveKlgd~--------------K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l---~~~KnpKv~~e~ 738 (1972)
..+.+..++....+-..|. -....|.++|..++-..++..|+..+++.+ ..+.+||-|-++
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 2223333333333333331 135678889999999999999888887754 468999999999
Q ss_pred HHHHHHHHHHhCCC-CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh-hcccHHHHHHHHHHHhcC
Q 000167 739 ILWMVSAVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 739 l~~L~~~i~~fG~~-~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~efek~ 816 (1972)
|..|+.+.+..+-. .-.+..+++.+... |.|+.|.||.+|..++|.|-..+++.+..+. +.++|++...++..
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~---- 443 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST---- 443 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc----
Confidence 99999998843321 01466788888885 9999999999999999999988887776544 44444444433321
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccc-cCCCCChhh
Q 000167 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGE 895 (1972)
Q Consensus 817 ~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~-~I~~~~~~e 895 (1972)
.+-++-.-|.-.+-...+++.+ .|.|. +..
T Consensus 444 ------------------------------------------------~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~ 474 (1075)
T KOG2171|consen 444 ------------------------------------------------QNVRVQAHAAAALVNFSEECDKSILEPY-LDG 474 (1075)
T ss_pred ------------------------------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHH-HHH
Confidence 1233334444445545554433 34454 477
Q ss_pred HHH-HHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHhcCch
Q 000167 896 LFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK----KHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 896 L~~-~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k----~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
|+. .|.-.+....+.|+..++.+|+.+|.+.+..|.+|...++|.+.+.|...+ ..+|.....|+..+...+|=+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 888 444444666778889999999999999999999999999999999886544 468888889999988888866
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHH
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~ 1050 (1972)
++.|.-.+.++ .+.. +. ....|.+...|........-+++++|.+ |.+
T Consensus 555 ~F~~~a~eliq--------------ll~~-~~----------------~~~~~~dd~~~sy~~~~warmc~ilg~~-F~p 602 (1075)
T KOG2171|consen 555 KFLPLAEELIQ--------------LLLE-LQ----------------GSDQDDDDPLRSYMIAFWARMCRILGDD-FAP 602 (1075)
T ss_pred hhhHhHHHHHH--------------HHHh-hc----------------ccchhhccccHHHHHHHHHHHHHHhchh-hHh
Confidence 66664333222 2211 00 0122334446778887888889999985 466
Q ss_pred HhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcccccchhhhhhhh
Q 000167 1051 NLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQA 1130 (1972)
Q Consensus 1051 ~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 1130 (1972)
+++..=|.-.+ .++.. |--...... ......... +... ..-.+. +
T Consensus 603 ~L~~Vmppl~~-------ta~~~---p~~~~~d~~--d~e~~~~~~-----~~e~--~~~~~~-------------e--- 647 (1075)
T KOG2171|consen 603 FLPVVMPPLLK-------TARLD---PDVALSDEE--DEEEEQDLD-----GWEV--VELGDK-------------E--- 647 (1075)
T ss_pred HHHHHhHHHHH-------hhccC---CcccCcCch--hhhhccccc-----cchh--hccCCc-------------e---
Confidence 66433222211 11110 000000000 000000000 0000 000000 0
Q ss_pred ccccCCCC---hHHhh-h----hhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhc----
Q 000167 1131 LLNVKDSN---KEDRE-R----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL---- 1198 (1972)
Q Consensus 1131 ~~~~~~~~---k~~R~-~----~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l---- 1198 (1972)
.+-+..+. |+.=. . -...|-.|. .++|+-...| +....|.-.-..|.+|++.|-..+
T Consensus 648 ~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~----pYve~v~~l~-------v~~l~f~fhdgVR~aa~~~~p~ll~~~~ 716 (1075)
T KOG2171|consen 648 NIGIRTSVLDEKETACEALGEYAKELKEAFA----PYVEQVVELM-------VPLLKFYFHDGVRKAAAESMPQLLTCAL 716 (1075)
T ss_pred eeeeeehhHHHHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00000110 11000 0 001122232 2222221111 222333333334556666555433
Q ss_pred ---CcchhhHHHHHHHHHHHHHHhh-cCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh-------CC
Q 000167 1199 ---PSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS-------GH 1267 (1972)
Q Consensus 1199 ---~~~~~~~i~~lDlllk~~~lr~-~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~-------Gd 1267 (1972)
...+..+....+-+++.+..-+ .+.-+.|+..+|+-+...+..+.... |.+.+...++-.+..++ +|
T Consensus 717 ~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~--L~~~~~~~~~~~~~~~~l~~~~~~~~ 794 (1075)
T KOG2171|consen 717 KACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNC--LNEDGLEALLGGLLAQLLQHFKRMQD 794 (1075)
T ss_pred HHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCccc--CCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2344545554555555554443 45788999999999998888877654 77777777776664443 22
Q ss_pred ---------ChHHHHHHHH----HHHHHHhhc-------CCc------cccHHHHHhhhcCCChhhHHHHHHHHHHHHHh
Q 000167 1268 ---------NIEKVREKMR----ELTKQIVNF-------YSA------TKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321 (1972)
Q Consensus 1268 ---------~k~~vr~~v~----~il~~~~~v-------~~~------skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~ 1321 (1972)
-.+..++.+. .++..++.+ +-. ..++|++..-+++++.--|+=.+..++.+|+.
T Consensus 795 r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~ 874 (1075)
T KOG2171|consen 795 RQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEG 874 (1075)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 1111222222 133333332 221 25788887777777655588888889999998
Q ss_pred hCCCccccc--chHHHHHhhhcCCchHHHHHHHHHHHHHHHHhCHHHHHHhhcCCHH
Q 000167 1322 HGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDA 1376 (1972)
Q Consensus 1322 ~G~~~~~~~--k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~~vg~ls~~ 1376 (1972)
.|-.. -+. .-++.+..++.|.+++||++|---++.+-.+.|+..-..+..+.+.
T Consensus 875 ~~~a~-~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~ 930 (1075)
T KOG2171|consen 875 CGEAS-AKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPL 930 (1075)
T ss_pred ccccc-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 88653 222 2359999999999999999999999999999888733333333333
No 7
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.73 E-value=4.7e-17 Score=190.05 Aligned_cols=208 Identities=21% Similarity=0.327 Sum_probs=142.4
Q ss_pred cccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC----hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh
Q 000167 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1972)
Q Consensus 853 ~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~----~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~ 928 (1972)
.|...|.+...+.+|+.|.+|++.|+.++.+....-.... +.++...+...+.|.|..|+..||.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566667889999999999999999986311111111 223334666788999999999999999999999999
Q ss_pred hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-l~~l-l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
.|++|+..++|.++++++|+++.||++|..||.+++.+++ ...+ ++.+..++.++ ||.+|..++.|+...+..++.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 77777788877 799999999999999999882
Q ss_pred -CCC------hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHH
Q 000167 1007 -FPD------AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (1972)
Q Consensus 1007 -~~~------~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I 1063 (1972)
... +..++..+..++.|++++||++|+.++..++.++|+.+ ...+..|+|..++.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 111 23455669999999999999999999999999999986 556789999888765
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.66 E-value=2.9e-09 Score=134.51 Aligned_cols=501 Identities=17% Similarity=0.211 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCChHhHHHHHHHHhhc--CCh
Q 000167 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKN--KVP 417 (1972)
Q Consensus 341 V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~-~~~l~~il~~l~~~l~~--Knp 417 (1972)
+...+|..++.+-..+|.-.-++...++..++-.+.-....||.-+..||..+..++ ..-+..+++++..+|.+ ++.
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchH
Confidence 566677777777778887777788889999999999999999999999999988771 13356788888888874 444
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHH
Q 000167 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494 (1972)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l---~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~k 494 (1972)
.+|.. .+.|+.+.... ...+..+++.++|.+...+ +..+.+.|++..++++.|....+.+ +.|+.+.+-..-.+
T Consensus 229 ~~rt~-Iq~l~~i~r~a-g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e-i~p~~pei~~l~l~ 305 (1233)
T KOG1824|consen 229 ATRTY-IQCLAAICRQA-GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE-ILPHVPEIINLCLS 305 (1233)
T ss_pred HHHHH-HHHHHHHHHHh-cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh-hcccchHHHHHHHH
Confidence 55542 23333332222 2345567788999999988 8899999999999999999888754 77887776443332
Q ss_pred HHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQET 574 (1972)
Q Consensus 495 kI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~ 574 (1972)
+| .- + | +--. ..+ + +...
T Consensus 306 yi----sY--D-P--Ny~y-----------d~~--e------------------------------------Ded~---- 323 (1233)
T KOG1824|consen 306 YI----SY--D-P--NYNY-----------DTE--E------------------------------------DEDA---- 323 (1233)
T ss_pred Hh----cc--C-C--CCCC-----------CCc--c------------------------------------chhh----
Confidence 22 11 0 0 0000 000 0 0000
Q ss_pred CCCCCCCCCCC-CCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccc--------c----------
Q 000167 575 SKLTEAPEDVE-PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--------L---------- 635 (1972)
Q Consensus 575 s~~~~~~~~~~-~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--------~---------- 635 (1972)
...+..+|.+ ..++|+|| +-.||.|.+|..-+...+.+-.+ .
T Consensus 324 -~~~ed~eDde~~deYsDDe------------------D~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkE 384 (1233)
T KOG1824|consen 324 -MFLEDEEDDEQDDEYSDDE------------------DMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKE 384 (1233)
T ss_pred -hhhhccccchhcccccccc------------------chhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHH
Confidence 0000000000 12233322 22355555555444433322000 0
Q ss_pred -c-----hhHHHHHHHHhcCCC-------------------------------------CccchHHHHHHHHHHHHHHHH
Q 000167 636 -D-----QSVEILVRLVCMLPG-------------------------------------WSEKNVQVQQQVIEVINYLAA 672 (1972)
Q Consensus 636 -~-----~~~~~lv~~L~~~p~-------------------------------------~~DsN~qV~~~~Le~l~~l~~ 672 (1972)
+ ....+.+..|...+. +++...+-.+..|..+..++.
T Consensus 385 REEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~ 464 (1233)
T KOG1824|consen 385 REENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELIN 464 (1233)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 0 001222222222222 223333334456667777776
Q ss_pred HcCCCchhhHHHHHHHHHhhhcchh----hhHHHHHHHHHHHhhcChhHHHHH----HHH---hhhhCCChHHHHHHHHH
Q 000167 673 TATKFPKKCVVLCLLGISERVADIK----TRAHAMKCLTTFSEAVGPGFIFER----LYK---IMKDHKNPKVLSEGILW 741 (1972)
Q Consensus 673 ~~~~~~~~~~~~il~~LveKlgd~K----~r~~a~~~L~~l~e~~~~~~vl~~----l~~---~l~~~KnpKv~~e~l~~ 741 (1972)
.++....++...++|+++-.+.|.- .+..+.-.|.......+|+ +|.- +.+ ......=+|+..|+|..
T Consensus 465 ~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~-~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v 543 (1233)
T KOG1824|consen 465 VLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE-VFHPHLSALSPPVVAAVGDPFYKISAEALLV 543 (1233)
T ss_pred hCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh-hcccchhhhhhHHHHHhcCchHhhhHHHHHH
Confidence 6666666777888999998888842 2222222222222233332 2222 211 12345668999999999
Q ss_pred HHHHHHHhCC----CCCC----hhhHHHHH-HhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHH
Q 000167 742 MVSAVEDFGV----SHLK----LKDLIDFC-KDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1972)
Q Consensus 742 L~~~i~~fG~----~~l~----~k~li~~l-~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (1972)
..++++-.-. ..++ ++.++... +.+-..+.+.+||+.|+.|++.+...+|+.++.++...-|.+++.+..|
T Consensus 544 ~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE 623 (1233)
T KOG1824|consen 544 CQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE 623 (1233)
T ss_pred HHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch
Confidence 8888874322 1233 34444443 2222467889999999999999999988666655544444433333332
Q ss_pred HhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCC--C
Q 000167 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--P 890 (1972)
Q Consensus 813 fek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~--~ 890 (1972)
. .|..|+..+.-|... .-.|. +
T Consensus 624 i-------------------------------------------------------TRl~AvkAlt~Ia~S-~l~i~l~~ 647 (1233)
T KOG1824|consen 624 I-------------------------------------------------------TRLTAVKALTLIAMS-PLDIDLSP 647 (1233)
T ss_pred h-------------------------------------------------------HHHHHHHHHHHHHhc-cceeehhh
Confidence 1 244455555544432 12222 2
Q ss_pred CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-
Q 000167 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH- 968 (1972)
Q Consensus 891 ~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~- 968 (1972)
. ..++...|..-+.-.+..++..++.++..|.+..+..+..+ +..++-.+...+.++...|-+-|..++.+++..-+
T Consensus 648 ~-l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps 726 (1233)
T KOG1824|consen 648 V-LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPS 726 (1233)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccH
Confidence 2 25555555555554556677888999999999998887765 45677778888899999999999999999887654
Q ss_pred -----chhhHHHHHHHHhcC
Q 000167 969 -----LDKMVPYVTTALTDA 983 (1972)
Q Consensus 969 -----l~~ll~~l~~~L~~~ 983 (1972)
-..+++.+...++++
T Consensus 727 ~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 727 SLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHhhhhHHHHHHHhhCc
Confidence 356778888888754
No 9
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.5e-13 Score=169.78 Aligned_cols=514 Identities=18% Similarity=0.173 Sum_probs=330.5
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCcc-ChhHHHHhhhhhhcC-CChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHH
Q 000167 138 KNKVAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDH-QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDT 215 (1972)
Q Consensus 138 ~~KnpKv~~~~l~~l~~~l~~fG~~~~-~~k~il~~l~~ll~~-~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~ 215 (1972)
.+..+.+....+.+...++.++|.+.+ +++++.. ..++| .+.++|+....+.+.+.+|+... +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~---~~l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~ 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFE---QRLNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHH---HHhccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh
Confidence 566777778888888888999998643 3344332 22222 28889999888887777777531 22222
Q ss_pred HHHHHHHHHHhccCCCCCCcchhhhhhHhhhhh-ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhh
Q 000167 216 MKKELEVELVNVSGTARPTRKIRAEQDKELGQE-LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 294 (1972)
Q Consensus 216 q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l 294 (1972)
.-++..++.. .+|+...+ ++... -+.-.. . . +..+...++ +...+.+
T Consensus 96 --~~~~~~~~~~---~tps~~~q-----~~~~~~l~~~~~--~------------~---~~~~~~~~l-----~~l~~ll 143 (569)
T KOG1242|consen 96 --SIIEILLEEL---DTPSKSVQ-----RAVSTCLPPLVV--L------------S---KGLSGEYVL-----ELLLELL 143 (569)
T ss_pred --HHHHHHHHhc---CCCcHHHH-----HHHHHHhhhHHH--H------------h---hccCHHHHH-----HHHHHHh
Confidence 1223333332 23432111 11000 000000 0 0 000011111 3455667
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHH-HHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 000167 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~-A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (1972)
+..+..+|+.|...+..+.++.-+....-..++..|.+.+.|.+....++ +..+.......||+.|+||...++|.+|.
T Consensus 144 ~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~ 223 (569)
T KOG1242|consen 144 TSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT 223 (569)
T ss_pred ccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH
Confidence 89999999999999999998776665444568899999999999888885 78888888899999999999999999999
Q ss_pred HhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000167 374 KLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (1972)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 452 (1972)
+++|+-+.||+++..|.++++.. ...++..+++.++.++....|+.|..++..+. ++..+.+.++..+++.++|.+.+
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHH
Confidence 99999999999999999999985 23557789999999888779999999999998 67778888888999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccc
Q 000167 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532 (1972)
Q Consensus 453 ~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~ 532 (1972)
.|.|++++||++|.+|+-.+..++.+..+.++++.|- +++.. |+...
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~---------------- 349 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYT---------------- 349 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccch----------------
Confidence 9999999999999999999999999988888887652 33211 00000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhc
Q 000167 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 612 (1972)
Q Consensus 533 ~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s 612 (1972)
.+.--+ .+. +.-...+ ++..-+++-+-+...|..
T Consensus 350 --~e~~~~-L~~---------------------------------ttFV~~V----------~~psLalmvpiL~R~l~e 383 (569)
T KOG1242|consen 350 --PECLDS-LGA---------------------------------TTFVAEV----------DAPSLALMVPILKRGLAE 383 (569)
T ss_pred --HHHHHh-hcc---------------------------------eeeeeee----------cchhHHHHHHHHHHHHhh
Confidence 000000 000 0000001 111112233444444443
Q ss_pred CChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhh
Q 000167 613 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISER 692 (1972)
Q Consensus 613 ~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveK 692 (1972)
.+.-.+..++..+. -+..+++. +.-....+..++|++=..
T Consensus 384 Rst~~kr~t~~Iid---------------------------------------Nm~~LveD-p~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 384 RSTSIKRKTAIIID---------------------------------------NMCKLVED-PKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred ccchhhhhHHHHHH---------------------------------------HHHHhhcC-HHHHhhhHHHHhhHHHHH
Confidence 33222222221111 11111110 000112344555555555
Q ss_pred hcc--hhhhHHHHHHHHHHHhhcCh---hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHH-HHHhc
Q 000167 693 VAD--IKTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID-FCKDT 766 (1972)
Q Consensus 693 lgd--~K~r~~a~~~L~~l~e~~~~---~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~-~l~~~ 766 (1972)
+-| +-+|..+..+|..+.|..+- +.+...+...+...|.-+-+.+++..+..++...|.... ..++. .+...
T Consensus 424 ~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~ 501 (569)
T KOG1242|consen 424 LDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANA 501 (569)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHH
Confidence 544 35677777777777665443 345666666666677788899999999999988776532 22222 22222
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcC
Q 000167 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 767 gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~ 816 (1972)
......+-+|..-+.++..+-...|..+..|+.++.+.+++.+.+.-+..
T Consensus 502 ~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~ 551 (569)
T KOG1242|consen 502 SSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKG 551 (569)
T ss_pred hhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCcc
Confidence 13334556898888888888778888888999888888888777654443
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.6e-12 Score=152.35 Aligned_cols=692 Identities=15% Similarity=0.175 Sum_probs=417.6
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----hhhch-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000167 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~----L~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (1972)
++.++.+.|..++.....+....|+.++..+++. +..++ .+....++|.+|.-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 3566677777766622223556666666666553 33332 256889999999999999999999999999987643
Q ss_pred c----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 397 G----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 397 ~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
. ..+++.+++.+..--.+.+|.||...+..+..+++..+. .+.+++..++..+.....|.+.+|--.|++-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 1 245677888888766789999999999999998886554 36678899999999999999999988888877666
Q ss_pred HHH-hCchhHHHhHhhccHHHHHHHHH-----HHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCC
Q 000167 473 AKS-VGMRPLERSIEKLDDVRRNKLSE-----MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (1972)
Q Consensus 473 ~~~-~ge~~~~~~l~~Ld~~~~kkI~e-----~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~ 546 (1972)
+.. +....+.+|+++|-|.....+.- .+-+. .. +...++-.. ...+
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~---~e---------------------eD~~vpDre----eDIk 335 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN---NE---------------------EDESVPDRE----EDIK 335 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC---cc---------------------ccccCCchh----hhcc
Confidence 644 33456788888877654332210 00000 00 000000000 0011
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHH----HhhccCc--------HHHHHhhh
Q 000167 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP---SEMSLEEIES----RLGSLIP--------ADTVGQLK 611 (1972)
Q Consensus 547 P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~---~~~s~ee~e~----~~~~ll~--------~~l~~~L~ 611 (1972)
|--. |+...+.+.-+ ...-.+..++-.. ..+....+.+ .++.+++ |-+.+.|.
T Consensus 336 PRfh----------ksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 336 PRFH----------KSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred chhh----------hchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 1100 01111111000 0000000000000 1111122222 2233444 45567789
Q ss_pred cCChHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC-CCchhhHHHHHHHH
Q 000167 612 SAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGI 689 (1972)
Q Consensus 612 s~~Wk~Rl~a~e~L~~~v~~-~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~L 689 (1972)
+.+|+.|.+|+-.|+.+.++ ++...+....++.+|.. .+.|+-.-|..-.+=+|..+..-.. .-....+..++.++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 99999999999999999888 55444444445555431 3556555555433333333332111 11235667888899
Q ss_pred Hhhhcch--hhhHHHHHHHHHHHhhcChhH------HHHHHHHhh--hhCCChHHHHHHHHHHHHHHHHhCCCC----CC
Q 000167 690 SERVADI--KTRAHAMKCLTTFSEAVGPGF------IFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSH----LK 755 (1972)
Q Consensus 690 veKlgd~--K~r~~a~~~L~~l~e~~~~~~------vl~~l~~~l--~~~KnpKv~~e~l~~L~~~i~~fG~~~----l~ 755 (1972)
+.++-|. |++++|..++..+-|..+.+. ++.+++... -++||-.+...++..|+.-+-..=.+. +-
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999885 589999999999988776553 344444332 147899999999988888774221110 11
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHH---HhcCCCCC-CCCCCCc-ccc
Q 000167 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE---YEKNPFEG-TVVPKKT-VRA 830 (1972)
Q Consensus 756 ~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e---fek~~~~~-~~~p~r~-~r~ 830 (1972)
+.++++.-. . +.++++++-- -.+|+..+...+|..+.+|-..+=..-+..|++- ..++.... -..|-+. +-.
T Consensus 562 mPPLi~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 562 MPPLIEKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred ccHHHHHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 233443333 3 7888887643 3567777777788777776644333333333322 22332110 0112221 100
Q ss_pred cccc--C---CCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc
Q 000167 831 SEST--S---SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1972)
Q Consensus 831 ~~~~--~---s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~ 905 (1972)
+-+- + +-+++.+.++.+.+ |..-++.-+.|.--.+|..+.-.+..+...+...+.|+. .+++..|-.-++
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-ADFLPILGANLN 713 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHhhcCC
Confidence 0000 0 00111222333322 334456677899999999999999999987777788875 888888887787
Q ss_pred cchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHH
Q 000167 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVT 977 (1972)
Q Consensus 906 DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k--~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~ 977 (1972)
-.+..+.-.|+-.+|+|+..+|.+..+|+..++-.++.-++-++ ..+-+-..-+++.+...++ ++.++..-.
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc 793 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWC 793 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHH
Confidence 78888999999999999999999999999999998888776433 3344444445555544443 222222222
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000167 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1972)
Q Consensus 978 ~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1972)
..|++=+ .-+.|..++.-+...+.-.+.. ..+.-++. .+....+...++|..-.+.|-.+...+|...-..++..+
T Consensus 794 ~sl~~i~-DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~-aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 794 TSLRNID-DNEEKESAFRGLCNMINVNPSGVVSSFIFICD-AIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHhcccc-cchhHHHHHHHHHHheeeCchhhhhhhHHHHH-HHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 3333211 1234666666665555444331 11111112 344556777899999999999999999988888899999
Q ss_pred ChHHHHHHHHH
Q 000167 1056 QGPALALILER 1066 (1972)
Q Consensus 1056 ~~~~~~~I~~~ 1066 (1972)
+|..+..+...
T Consensus 872 ~P~~~erl~a~ 882 (885)
T KOG2023|consen 872 PPPLKERLQAF 882 (885)
T ss_pred ChhHHHHHHHH
Confidence 99887766653
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.2e-11 Score=146.07 Aligned_cols=672 Identities=18% Similarity=0.206 Sum_probs=383.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhhh-----hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh------hhhhHHHHHH
Q 000167 66 APVQDKALDALIAYLKAADADAG-----RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE------AVDVFLDVME 134 (1972)
Q Consensus 66 ~~vqe~~leal~~~v~~~~~~~~-----~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~------~~~~v~~~L~ 134 (1972)
...+|.|+.||....+-...-+- +...-++|.+++-.-...|++|..|+.|+-.|+=+. ..+..++.|.
T Consensus 142 ~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lF 221 (885)
T KOG2023|consen 142 YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILF 221 (885)
T ss_pred ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHH
Confidence 37889999988877765433111 224445666665533368999999999999988542 2255566665
Q ss_pred HHhhcCChhhHHHHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHh-hCCchhhHHHhhhC
Q 000167 135 KAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKTILFEKM 212 (1972)
Q Consensus 135 ~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-lG~~~l~~~l~~~L 212 (1972)
.-.+.-+|.|+......+.-+++-.--+.+| +..|+.++...-.+.|.+|-=||..+...+... +-+..+.++| ++|
T Consensus 222 alanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l-~kl 300 (885)
T KOG2023|consen 222 ALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL-DKL 300 (885)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH-HHH
Confidence 5557889999988888888777654445554 678999999999999999999998887666532 2223454555 566
Q ss_pred hHHHHHHH-----HH-HHHhcc-CCCCCC-------cchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000167 213 RDTMKKEL-----EV-ELVNVS-GTARPT-------RKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 278 (1972)
Q Consensus 213 k~~q~keL-----e~-~f~k~~-~~~~P~-------R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~ 278 (1972)
-|+.+.-. +- ..++.. ....|- ||-++... |.+.. .++++++.|
T Consensus 301 iPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~------------~~~~~---~~~eDdddD------- 358 (885)
T KOG2023|consen 301 IPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH------------GNGED---ADDEDDDDD------- 358 (885)
T ss_pred HHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc------------cCccc---ccccccccc-------
Confidence 66654421 00 111111 112222 33322211 11110 011111111
Q ss_pred ccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh
Q 000167 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT 358 (1972)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~ 358 (1972)
++-+.....+|.-|+.....|.-+++. +...-+.-+++.|++.+..-+=.|...++-++|.+|+|.-.
T Consensus 359 ----------e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~ 426 (885)
T KOG2023|consen 359 ----------EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ 426 (885)
T ss_pred ----------ccccccccccccHhhccHHHHHHHHHh--hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh
Confidence 111223557899999776666555541 11122456778888888877777888899999999999999
Q ss_pred chhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000167 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1972)
Q Consensus 359 ~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (1972)
.|-||...++|.++..+.|||+-||.- .|.++.+.-..+. +...
T Consensus 427 g~~p~LpeLip~l~~~L~DKkplVRsI-----------TCWTLsRys~wv~----------------------~~~~--- 470 (885)
T KOG2023|consen 427 GFVPHLPELIPFLLSLLDDKKPLVRSI-----------TCWTLSRYSKWVV----------------------QDSR--- 470 (885)
T ss_pred hcccchHHHHHHHHHHhccCccceeee-----------eeeeHhhhhhhHh----------------------cCCh---
Confidence 999999999999999999999988852 2666555433332 1111
Q ss_pred HHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCC
Q 000167 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQT 518 (1972)
Q Consensus 439 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~ 518 (1972)
.++++.++..+.+.+-|++..|.+||+.+++++-.-.|++ +-||++.+=..-......|-.
T Consensus 471 -~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~----------------- 531 (885)
T KOG2023|consen 471 -DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQK----------------- 531 (885)
T ss_pred -HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhh-----------------
Confidence 2334667777889999999999999999999999999986 667776653332222222111
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHh
Q 000167 519 SGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598 (1972)
Q Consensus 519 ~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~ 598 (1972)
T Consensus 532 -------------------------------------------------------------------------------- 531 (885)
T KOG2023|consen 532 -------------------------------------------------------------------------------- 531 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHh-cCCCCccchHHHHHHHHHHHHHHHHHcC-C
Q 000167 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVC-MLPGWSEKNVQVQQQVIEVINYLAATAT-K 676 (1972)
Q Consensus 599 ~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~-~~p~~~DsN~qV~~~~Le~l~~l~~~~~-~ 676 (1972)
+|-..=.+|+..|.+.+...-....+.++++.-|. |--.++|+..- +--.|+++..++..++ .
T Consensus 532 --------------KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd-LfPLLEClSsia~AL~~g 596 (885)
T KOG2023|consen 532 --------------KNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD-LFPLLECLSSIASALGVG 596 (885)
T ss_pred --------------cceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch-HHHHHHHHHHHHHHHhcc
Confidence 01111122222222222111001113333333221 11123443322 2235677777776553 2
Q ss_pred C---chhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCC
Q 000167 677 F---PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1972)
Q Consensus 677 ~---~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~ 753 (1972)
| ....+..|+ .|+.| ++..++....+.. ..+..-....-+|..++-+.+..|...
T Consensus 597 F~P~~~~Vy~Rc~-~il~~------------t~q~~~~~~~~~~---------~~~pdkdfiI~sLDL~SGLaegLg~~i 654 (885)
T KOG2023|consen 597 FLPYAQPVYQRCF-RILQK------------TLQLLAKVQQDPT---------VEAPDKDFIIVSLDLLSGLAEGLGSHI 654 (885)
T ss_pred ccccCHHHHHHHH-HHHHH------------HHHHHHhccCCcc---------ccCCCcceEEEeHHHHhHHHHHhhhch
Confidence 2 222222222 12211 2222222211110 011111123345666777777666532
Q ss_pred ---CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000167 754 ---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1972)
Q Consensus 754 ---l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~ 830 (1972)
+.-..+.+.+..+ +.+.-|+||++|..++|.|-++.-+.+.++++++-|.+-..+
T Consensus 655 e~Lva~snl~~lll~C-~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl--------------------- 712 (885)
T KOG2023|consen 655 EPLVAQSNLLDLLLQC-LQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL--------------------- 712 (885)
T ss_pred HHHhhhccHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC---------------------
Confidence 1123477777775 999999999999999999987765556666555544432111
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc--ccch
Q 000167 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSN 908 (1972)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L--~DsN 908 (1972)
.++.+. .-..|.-.++++........++. .+.++.-|...+ ...+
T Consensus 713 ------------------------~~~~is--------v~nNA~WAiGeia~k~g~~~~~~-v~~vl~~L~~iin~~~~~ 759 (885)
T KOG2023|consen 713 ------------------------NPENIS--------VCNNAIWAIGEIALKMGLKMKQY-VSPVLEDLITIINRQNTP 759 (885)
T ss_pred ------------------------Chhhch--------HHHHHHHHHHHHHHHhchhhhhH-HHHHHHHHHHHhcccCch
Confidence 111111 22344445666654322222322 244444444444 3456
Q ss_pred HHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcC-C
Q 000167 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDA-K 984 (1972)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~-~ 984 (1972)
+.+...+..+||.++-..+..+.+|...++.+....+..=+ ..-.+.|...+-.|+...+ +-.-+..+..++.+= +
T Consensus 760 ~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~n 839 (885)
T KOG2023|consen 760 KTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSN 839 (885)
T ss_pred HHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccC
Confidence 67778888889999887777888999999988776554321 1245677777777766543 333334455555421 1
Q ss_pred CChhHHHHHHHHHHH
Q 000167 985 LGAEGRKDLFDWLSK 999 (1972)
Q Consensus 985 ~~~~~R~~~l~~L~~ 999 (1972)
.....|.+..+.|..
T Consensus 840 p~~~l~~~f~kiL~g 854 (885)
T KOG2023|consen 840 PEDDLRDEFYKILQG 854 (885)
T ss_pred hHHHHHHHHHHHHHH
Confidence 113455555555543
No 12
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.54 E-value=1.3e-12 Score=155.04 Aligned_cols=387 Identities=17% Similarity=0.186 Sum_probs=265.6
Q ss_pred hHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhhcChhHHHHHHHHhhhh---CCChHHHHHHHHHHHHHHHHhCCCC-
Q 000167 681 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSH- 753 (1972)
Q Consensus 681 ~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~---~KnpKv~~e~l~~L~~~i~~fG~~~- 753 (1972)
|...-+..++.|-|-. -++......+.++..++.+.+... +++.+-+ .-.||-+...++++....++|...+
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 3444445555554432 234555556777788888777666 6666532 3489999999999999998875432
Q ss_pred -CChhh----HHHHHHhcCCCC-CchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCC-CCCCC-
Q 000167 754 -LKLKD----LIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPK- 825 (1972)
Q Consensus 754 -l~~k~----li~~l~~~gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~-~~~p~- 825 (1972)
.+.+. +..+.... ++- ....+-....+.++.++..+..+|...++.+.|...+-.-+..+.+..+. .|.|.
T Consensus 139 s~~t~~~~~s~rkm~~~~-~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKMFPWM-FDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhccccc-cCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 22222 12222211 111 11223455566777777777778998888999988777776666553221 11111
Q ss_pred -C--cc-cccccc--------C-----CC---------CCC--------------CCCCCCcccc-cccccHHHHHhcCC
Q 000167 826 -K--TV-RASEST--------S-----SV---------SSG--------------GSDGLPREDI-SGKFTPTLVKSLES 864 (1972)
Q Consensus 826 -r--~~-r~~~~~--------~-----s~---------~~~--------------~~d~lprvdI-s~~l~~~ll~~l~d 864 (1972)
+ +. +.+... + .. +.+ ..+.+++..+ ...+..+++.++++
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 00 000 0011221111 11234466777766
Q ss_pred C-CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHH
Q 000167 865 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1972)
Q Consensus 865 ~-~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D-sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (1972)
. .-..|++|+.+|.+++.+....++...|++|+..+.+.|.| .+......|+++|+.++++-...|..+.+..+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 6 78899999999999998877788888899999999999999 788899999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChh-hhHHHHH
Q 000167 943 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAA-HLLKPAS 1018 (1972)
Q Consensus 943 ~~L~D~k~-~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~-~ll~pl~ 1018 (1972)
++-+|+.+ .+|.|+..|+..+..+.++..+. .+...+.+.. ...-..+++++.+.++..+.. ..+. ++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~I~-~i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV-NISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhHHH-HHhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999765 57777777788888888766543 3444444332 223466788999999887752 2333 3444499
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000167 1019 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1972)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~ 1072 (1972)
++++..++.|||.|..||.+++..+|.+.|.+++..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998754
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3e-11 Score=149.63 Aligned_cols=365 Identities=17% Similarity=0.161 Sum_probs=259.8
Q ss_pred HHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC-CChhH
Q 000167 31 ANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKT 109 (1972)
Q Consensus 31 ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~-~k~~~ 109 (1972)
+|.-+........+..||..-.+...+..-+.-.-..+|+....||-.++-........ -+..++.++++ .+...
T Consensus 75 ~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~----~~l~~l~~ll~~~~~~~ 150 (569)
T KOG1242|consen 75 NVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE----YVLELLLELLTSTKIAE 150 (569)
T ss_pred hhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH----HHHHHHHHHhccccHHH
Confidence 33333333333333344444444444455566777888998888888877654332222 23334445566 45555
Q ss_pred HHHHHHHHHHHH-----hhhhhhhHHHHHHHHhhcCChhhHH-HHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCCh
Q 000167 110 VEKAQAVFMLWV-----ELEAVDVFLDVMEKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQ 182 (1972)
Q Consensus 110 k~~a~~~ll~~~-----E~~~~~~v~~~L~~~~~~KnpKv~~-~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~ 182 (1972)
+..+..-+.-++ |......+++.|.++..+|++.... +++.+.......-|...-| +-+++|.+...|+|..+
T Consensus 151 ~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~ 230 (569)
T KOG1242|consen 151 RAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKIN 230 (569)
T ss_pred HhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccch
Confidence 555444333333 2234567889999998888776555 4666666666666754333 46788888899999999
Q ss_pred hHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCC
Q 000167 183 NVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 262 (1972)
Q Consensus 183 ~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~ 262 (1972)
.||.+|...+..+.+.+.+..++..+
T Consensus 231 ~Vr~Aa~~a~kai~~~~~~~aVK~ll------------------------------------------------------ 256 (569)
T KOG1242|consen 231 KVREAAVEAAKAIMRCLSAYAVKLLL------------------------------------------------------ 256 (569)
T ss_pred hhhHHHHHHHHHHHHhcCcchhhHhh------------------------------------------------------
Confidence 99999888776666665432221111
Q ss_pred CCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHH
Q 000167 263 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAV 341 (1972)
Q Consensus 263 ~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V 341 (1972)
| .....+.+.+|+.+..+++-|..++. .|+.......++++.|.+++.|+.+.|
T Consensus 257 -----------------------p--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ev 311 (569)
T KOG1242|consen 257 -----------------------P--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEV 311 (569)
T ss_pred -----------------------h--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHH
Confidence 1 11222333499999999999998874 555555567899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHH
Q 000167 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLV 419 (1972)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~l~~Knp~v 419 (1972)
+..+..|+..++....+ +-+..++|.|++.+.|.+..+.++...-..+=|.+ ...+++-++|.+..++..++..+
T Consensus 312 r~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~ 388 (569)
T KOG1242|consen 312 RKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSI 388 (569)
T ss_pred HHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchh
Confidence 99999999999988875 45888999999999999977775554444332222 13557788999999999999999
Q ss_pred HHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhH
Q 000167 420 RSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1972)
Q Consensus 420 R~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~ 481 (1972)
|..++..+.....-+ .+..+.++++.++|.+.+.+.|+.|+||..|.++|+.+.+..|++.+
T Consensus 389 kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 389 KRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999988877777 57778899999999999999999999999999999999999998755
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.41 E-value=5e-09 Score=128.91 Aligned_cols=661 Identities=18% Similarity=0.196 Sum_probs=382.6
Q ss_pred hccCChHHHHHHHHHHHHHh-c---------------CCCCCCCChHHHHHHHHHHh----------------------c
Q 000167 294 VKATKWSERKDAVAELTKLA-S---------------TKRIAPGDFTEVCRTLKKLI----------------------T 335 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~-~---------------~~ki~~~~y~~l~~~L~k~l----------------------~ 335 (1972)
+....-.-|++||..|..-+ . .+.+....-+-+++.+-.++ -
T Consensus 372 vKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvVieplli 451 (1172)
T KOG0213|consen 372 VKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI 451 (1172)
T ss_pred hcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeeccee
Confidence 45666677899998886532 1 22233333344444443321 1
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC
Q 000167 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (1972)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~K 415 (1972)
|.......+.-.+|..|++..|=. .++..|=--+..+..-||+-...|...+..+ .++..++|.|...+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 445555666666777776643311 1122222223456677888777777777776 78899999999888875
Q ss_pred -ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc---hhHHHhHhhccHH
Q 000167 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDDV 491 (1972)
Q Consensus 416 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge---~~~~~~l~~Ld~~ 491 (1972)
+|+-|.-+......+..-.+-+. .++++.++.++-++|.|....||--+.-++.++.+..+. +.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcsv-lphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCSV-LPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcchh-hhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 89999988777766544444443 467899999999999999999999999999999988653 4444444433221
Q ss_pred HHH----HHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 492 RRN----KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 567 (1972)
Q Consensus 492 ~~k----kI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~ 567 (1972)
.+. -+...++..|-.-|... ++-. .-..+.- +.--.+. .+.|
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~eya-~yyTrev---mlil~rE--------f~sP-------- 648 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AEYA-SYYTREV---MLILIRE--------FGSP-------- 648 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HHHH-HHhHHHH---HHHHHHh--------hCCC--------
Confidence 111 11111111111000000 0000 0000000 0000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC------HHHHHHH---hhccCcHHHHHhhhcCChHHHHHHHHHHHHHH----Hhccc
Q 000167 568 GSGKQETSKLTEAPEDVEPSEMS------LEEIESR---LGSLIPADTVGQLKSAVWKERLEAISSLRQQV----EAVQN 634 (1972)
Q Consensus 568 ~~~~~~~s~~~~~~~~~~~~~~s------~ee~e~~---~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v----~~~~~ 634 (1972)
..+|- .+++++. -..++-.+++..++.+=|..|.++-......+ .....
T Consensus 649 ------------------DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 649 ------------------DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred ------------------hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 00000 0000000 01234456777788888998888733222221 11110
Q ss_pred cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHhhhcchhhhHH-HHHHHHHHHh
Q 000167 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAH-AMKCLTTFSE 711 (1972)
Q Consensus 635 ~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~LveKlgd~K~r~~-a~~~L~~l~e 711 (1972)
.-.+.+.+-+.+. .++|.+.|-.....+.+..++.+.+ .+..+....++.+++-.+...-+-+. ....+..++.
T Consensus 711 KvG~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~ 787 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVN 787 (1172)
T ss_pred HhCchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 0012344445443 4688888888888898888888765 45666667777777766655332222 2233444444
Q ss_pred hcCh------hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHh---CCCCCChhhHHHHHHhcCCCCCchhHHHHHHHH
Q 000167 712 AVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF---GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782 (1972)
Q Consensus 712 ~~~~------~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~f---G~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~l 782 (1972)
.++. ..++..++..+ ++|+|+||+.++..++.+..-. |-.. -...+--.+-.. |+...|+|--.-..+
T Consensus 788 ~lg~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~-~m~~lGvvLyEy-lgeeypEvLgsILgA 864 (1172)
T KOG0213|consen 788 ALGGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEK-LMGHLGVVLYEY-LGEEYPEVLGSILGA 864 (1172)
T ss_pred HHhhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHH-HHHHhhHHHHHh-cCcccHHHHHHHHHH
Confidence 4332 23444455553 7999999999998887765432 2110 011122223454 888999999999999
Q ss_pred HHHHHHhhC-----hhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHH
Q 000167 783 LGALHKFVG-----PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPT 857 (1972)
Q Consensus 783 l~~Ly~~~G-----~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ 857 (1972)
+..+|..+| +.++..|..+.|.+.+. -+|++...- ..+-. . ...+.+.++.-+-. .|.=+
T Consensus 865 ikaI~nvigm~km~pPi~dllPrltPILknr----heKVqen~I----dLvg~---I---adrgpE~v~aREWM-RIcfe 929 (1172)
T KOG0213|consen 865 IKAIVNVIGMTKMTPPIKDLLPRLTPILKNR----HEKVQENCI----DLVGT---I---ADRGPEYVSAREWM-RICFE 929 (1172)
T ss_pred HHHHHHhccccccCCChhhhcccchHhhhhh----HHHHHHHHH----HHHHH---H---HhcCcccCCHHHHH-HHHHH
Confidence 999999887 44666666666655433 333321000 00000 0 00000111110000 14446
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHc-ChhhHhhhhh
Q 000167 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKG 936 (1972)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~al-g~~~~~~~~~ 936 (1972)
|++.+.+.|=.+|..|.+.+.-|. +.|.| .+++..|..-|+-.... .+++..++.+. +.-+.+| .
T Consensus 930 LlelLkahkK~iRRaa~nTfG~Ia----kaIGP---qdVLatLlnnLkvqeRq-----~RvcTtvaIaIVaE~c~pF--t 995 (1172)
T KOG0213|consen 930 LLELLKAHKKEIRRAAVNTFGYIA----KAIGP---QDVLATLLNNLKVQERQ-----NRVCTTVAIAIVAETCGPF--T 995 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH----HhcCH---HHHHHHHHhcchHHHHH-----hchhhhhhhhhhhhhcCch--h
Confidence 777777777788999999988765 35566 67777777655422222 22222222222 1112233 6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC--
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-- 1008 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~-- 1008 (1972)
++|.+++-..-...+|++-...+|.-+++.+| +-.++|.|.++|.+. ++.-|+.+...+.-..-+.+...
T Consensus 996 VLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr--D~vhRqta~~~I~Hl~Lg~~g~g~e 1073 (1172)
T KOG0213|consen 996 VLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR--DLVHRQTAMNVIKHLALGVPGTGCE 1073 (1172)
T ss_pred hhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--cHHHHHHHHHHHHHHhcCCCCcCcH
Confidence 89999999999999999999999999999987 456788899999876 46678777766653332322211
Q ss_pred -ChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000167 1009 -DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1972)
Q Consensus 1009 -~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1972)
.+.+++.-+...+-|.++-|-.+..+|+..+...+|...|.+++
T Consensus 1074 da~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1074 DALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred HHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 12344445677889999999999999999999999999999986
No 15
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=8e-11 Score=154.96 Aligned_cols=567 Identities=17% Similarity=0.195 Sum_probs=351.2
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchh
Q 000167 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1972)
Q Consensus 402 ~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~ 480 (1972)
..+...+...+.+-||..|++.+-||-.+++.+++ ....-.+++|..++..+|.|.|.=+.|.|.+.|+.++..-+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34455566677899999999999999999998863 23334568899999999999999999999999998887655432
Q ss_pred HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCC
Q 000167 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 560 (1972)
Q Consensus 481 ~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~ 560 (1972)
-..+.+.| +....+|.. ....+. .. ..-.+.+.. |+.|
T Consensus 897 k~~LV~sL-------~~tl~~Gkr-------~~~~vs------------~e--TelFq~G~L-g~Tp------------- 934 (1702)
T KOG0915|consen 897 KKSLVDSL-------VNTLTGGKR-------KAIKVS------------EE--TELFQEGTL-GKTP------------- 934 (1702)
T ss_pred HHHHHHHH-------HHHHhcccc-------ccceec------------cc--hhcccCCcC-CCCC-------------
Confidence 11222222 111111110 000000 00 000011111 0101
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhh-----cCChHHHHHHHHHHHHHHHhc-cc
Q 000167 561 KPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK-----SAVWKERLEAISSLRQQVEAV-QN 634 (1972)
Q Consensus 561 k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~-----s~~Wk~Rl~a~e~L~~~v~~~-~~ 634 (1972)
+| ...-|.-|+...++++-.|+++.++- +..|.-|.-|.-.|..+.... ..
T Consensus 935 ------~G-----------------g~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~k 991 (1702)
T KOG0915|consen 935 ------DG-----------------GKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEK 991 (1702)
T ss_pred ------CC-----------------CcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHh
Confidence 11 01226789999999999999987652 457999999999999998773 33
Q ss_pred cchhH-HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcch--hhhHHHHHHHHHHHh
Q 000167 635 LDQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSE 711 (1972)
Q Consensus 635 ~~~~~-~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e 711 (1972)
..++. +.+.|++.. --|.+..|++.+-++|..++.........++..++..|+..|++. ++|+++.-+|..+..
T Consensus 992 l~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 992 LEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred hhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence 44443 344454432 268999999999999999997655566778899999999999996 789999888888876
Q ss_pred hcChhHH-------HHHHHHhhhhCC-ChHH-HHHHHHHHHHHHHHhCCC--CCC----hhhHHHHHHhcCCCCCchhHH
Q 000167 712 AVGPGFI-------FERLYKIMKDHK-NPKV-LSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAATR 776 (1972)
Q Consensus 712 ~~~~~~v-------l~~l~~~l~~~K-npKv-~~e~l~~L~~~i~~fG~~--~l~----~k~li~~l~~~gL~~sn~~VR 776 (1972)
--+.+.+ +..+++.+-+.| +.|. -..++..|+.++-..+-. +.. +..+++++..-|.-++-++||
T Consensus 1069 g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr 1148 (1702)
T KOG0915|consen 1069 GRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVR 1148 (1702)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHH
Confidence 5554433 444444432222 2222 224556677766554431 111 344677775556778999999
Q ss_pred HHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHh-cCCCCCC------CCCCCccccccccCCC-CCCCCCCCCcc
Q 000167 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE-KNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLPRE 848 (1972)
Q Consensus 777 ~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efe-k~~~~~~------~~p~r~~r~~~~~~s~-~~~~~d~lprv 848 (1972)
..++.++..|-++.|..+++|+.+|.|.++..+..-=. .+.+-.. .......|.+.+.++. -...++.++..
T Consensus 1149 ~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~i 1228 (1702)
T KOG0915|consen 1149 RFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYI 1228 (1702)
T ss_pred HHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhh
Confidence 99999999999999999999999999988766542100 0000000 0000011211111000 00113445555
Q ss_pred ccc--ccccHHHHHhcCCC-CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Q 000167 849 DIS--GKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1972)
Q Consensus 849 dIs--~~l~~~ll~~l~d~-~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~a 925 (1972)
|++ .++.|.+.+.+... .--.|..+..-+.-+.......++|.. |.++.++...+.|-|..++..-...++.++..
T Consensus 1229 D~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1229 DISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhc
Confidence 553 45666666655433 455566666656666666667788876 99999999999999999999888999999988
Q ss_pred cCh-hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000167 926 MGP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1972)
Q Consensus 926 lg~-~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~--~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1972)
-.+ .+.++++.++..++....+.++........-.+...+.. ....++|.++=+.... ....+++++-+ +.+
T Consensus 1308 Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee---~Ka~q~Lw~dv--W~e 1382 (1702)
T KOG0915|consen 1308 SSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE---EKANQELWNDV--WAE 1382 (1702)
T ss_pred CChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHHH--HHH
Confidence 776 477888888888877666655333333322122222222 2467888666554321 11223333322 111
Q ss_pred cCCCCC-----ChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1003 GLSGFP-----DAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1003 ~~~~~~-----~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
..+... ....++.+ ....+++..+.+|+.+..++..+...
T Consensus 1383 ~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1383 LVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred hCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 122221 12334444 33456888889999988888766543
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.38 E-value=1.2e-07 Score=133.75 Aligned_cols=773 Identities=14% Similarity=0.126 Sum_probs=452.4
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhh---HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh-
Q 000167 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV- 126 (1972)
Q Consensus 52 ~~~~~~~k~v~D-sN~~vqe~~leal~~~v~~~~~~~~~~~---~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~- 126 (1972)
....++.++-.- ++...++.++..|..|.+...++ .+.. ...+|.||.-.-++.+.+|..|..++..+...+..
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 344556665443 46899999999999999886542 2222 34788888763346788898888777777655321
Q ss_pred -----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHh-----CCCccChhHHHHhhhhhhcCCC---hhHHHHHHHHHH
Q 000167 127 -----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLTL 193 (1972)
Q Consensus 127 -----~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~f-----G~~~~~~k~il~~l~~ll~~~d---~~VR~~a~~l~~ 193 (1972)
...++.|+..+.+-++..+..|..+|..+.... +.+++--...+|.|..++.+.+ +.|++.+...+.
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 344556666777778888888888887765421 2122212346777777777764 233333322222
Q ss_pred HHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCC
Q 000167 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEY 273 (1972)
Q Consensus 194 ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~ 273 (1972)
.|..+-+. ....+. + .+ .+
T Consensus 173 nLs~~~en--~~~~II------------------------------------------e---aG-----------aV--- 191 (2102)
T PLN03200 173 NLCGSTDG--FWSATL------------------------------------------E---AG-----------GV--- 191 (2102)
T ss_pred HHhcCccc--hHHHHH------------------------------------------H---cC-----------CH---
Confidence 22221110 000000 0 00 00
Q ss_pred CCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcC-CCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHH
Q 000167 274 ELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAI 349 (1972)
Q Consensus 274 dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~--~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l 349 (1972)
+.+.+.+.+.+=..+.+|...|..++.+ +.... -+ ...++.|.+.+. +.+..+...|+.+|
T Consensus 192 --------------p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 192 --------------DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred --------------HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 1233444555555666777766665532 21100 01 124677777886 56778999999999
Q ss_pred HHHHHHhhhchhhhh--hhHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC-Ch
Q 000167 350 GNLARGLRTHFSGSS--RFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VP 417 (1972)
Q Consensus 350 ~~La~~L~~~f~~~~--~~llp~LL~klkd---------kk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~K-np 417 (1972)
..|+.+- .++...+ ...+|.|++.+.. .+...++.+.-||..++.. ...+++.+...+.+. ..
T Consensus 257 ~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 257 EALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccchH
Confidence 9999741 2222221 2447777777653 3455678888888877652 356777777666542 34
Q ss_pred HHHHHHHHHHHHHHHhcChh-HHHHhh--hhHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHhCchhHHHhHhhccHHHH
Q 000167 418 LVRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPEV-RDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1972)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~k~l~Ds~~~V-R~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~ 493 (1972)
.+-..++..+..++...... .....+ ..+++.|++++...++.+ .+.+.++|. ..+|+..+...+..-|. .
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da--i 406 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA--K 406 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc--h
Confidence 44445555665554433211 111112 246789999999887774 766666664 44565444434332211 0
Q ss_pred HHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQE 573 (1972)
Q Consensus 494 kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~ 573 (1972)
+-+-..+...+ ..++........
T Consensus 407 k~LV~LL~~~~---------------------------~evQ~~Av~aL~------------------------------ 429 (2102)
T PLN03200 407 KVLVGLITMAT---------------------------ADVQEELIRALS------------------------------ 429 (2102)
T ss_pred hhhhhhhccCC---------------------------HHHHHHHHHHHH------------------------------
Confidence 11111111000 000000000000
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHh
Q 000167 574 TSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVC 647 (1972)
Q Consensus 574 ~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~ 647 (1972)
... .-+.+........-.-+-++..|.+.+-..|..|+..|..+..+.++.. .....|+++|.
T Consensus 430 --~L~---------~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~ 498 (2102)
T PLN03200 430 --SLC---------CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE 498 (2102)
T ss_pred --HHh---------CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 000 0011222222222234778899999999999999988887765432210 12345566553
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhcChhHHHHHHH
Q 000167 648 MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLY 723 (1972)
Q Consensus 648 ~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--d~K~r~~a~~~L~~l~e~~~~~~vl~~l~ 723 (1972)
..+..+++.+.-++..+... ..-.+..+ .-+++.|++-+. +.+.+..|..+|..+......+ ++..++
T Consensus 499 ------s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-~I~~Lv 570 (2102)
T PLN03200 499 ------TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-TISQLT 570 (2102)
T ss_pred ------CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-HHHHHH
Confidence 34667888888888776642 11112223 136777777664 4678888888998887754443 556676
Q ss_pred HhhhhCCChHHHHHHHHHHHHHHHHhCCC-----CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh
Q 000167 724 KIMKDHKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (1972)
Q Consensus 724 ~~l~~~KnpKv~~e~l~~L~~~i~~fG~~-----~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (1972)
.. ..+.+++++..++..+..++..-... +.....-++.+.++ +.+.++.+++.|..++..++....
T Consensus 571 ~L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~------- 641 (2102)
T PLN03200 571 AL-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQ------- 641 (2102)
T ss_pred HH-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCh-------
Confidence 65 47889999999999887776521111 01012356677777 899999999999998888864221
Q ss_pred hcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHH
Q 000167 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878 (1972)
Q Consensus 799 ~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~ 878 (1972)
.+.+.+-. ....+-++..+.+.+-+.|+++...|.
T Consensus 642 -----d~~~avv~----------------------------------------agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 642 -----DLCESLAT----------------------------------------DEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred -----HHHHHHHH----------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 11000000 001234677778888899999999999
Q ss_pred HHHHHcccc-CCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHH
Q 000167 879 KILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (1972)
Q Consensus 879 ~ll~~a~~~-I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~ 957 (1972)
.+....+.. ...-.-...++.|.+.|++.+..++..|+.+|..|+..-...-+-.....++.++..+.+....+|+.|.
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Confidence 888532100 0000013467889999999999999999999999986542221112245689999999999999999999
Q ss_pred HHHHHHHHhcCchhhH----------HHHHHHHhcCCC-ChhH--HHHHHHHHHHHhccCCC-CC------ChhhhHHHH
Q 000167 958 TVLDAWLAAVHLDKMV----------PYVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPA 1017 (1972)
Q Consensus 958 ~aL~~i~~~~~l~~ll----------~~l~~~L~~~~~-~~~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~pl 1017 (1972)
.+|..++.+.+.+.++ ..+.+.|...+. +... -.+++.|+++.=..... .+ +...-+.|+
T Consensus 757 ~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l 836 (2102)
T PLN03200 757 RALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPL 836 (2102)
T ss_pred HHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHH
Confidence 9999999888766533 345666764321 1111 23455555542111111 11 223457889
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1018 SIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1018 ~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
+.|+.+.+++|-..|.+.|..+++
T Consensus 837 ~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 837 VRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Confidence 999999999999999999998875
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.35 E-value=4.3e-07 Score=128.40 Aligned_cols=810 Identities=16% Similarity=0.144 Sum_probs=462.7
Q ss_pred chhhhhccC--ChHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhchh
Q 000167 289 GFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFS 361 (1972)
Q Consensus 289 ~f~~~l~s~--kWkeR~eaL~~L~~l~~~~---ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~ 361 (1972)
.+.+++.+. +-++|+.|+.+|+.+++.. +..-.+....++.|...|...+..+...|+.++..|+.. .+...-
T Consensus 17 ~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv 96 (2102)
T PLN03200 17 QCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVL 96 (2102)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 677788765 7799999999999998532 111111233567777777755677778888888888753 222221
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------hHhHHHHHHHHhhcCCh---HHHHHHHHHHHHH
Q 000167 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTFC 430 (1972)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~-~~~-------l~~il~~l~~~l~~Knp---~vR~~~l~~L~~~ 430 (1972)
....+|+|++.+++.+...++++..+|..+..++ +.. -..++|.+...+++.+. .++..++..|..+
T Consensus 97 --~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 97 --LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred --HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 2678999999999989999999999999987641 011 13467888888886542 2444445555554
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCC
Q 000167 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1972)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~ 509 (1972)
..... ......+ .-.+|.++..|.+.++.++..|..++..++...++ .. ..| ++. |+
T Consensus 175 s~~~e-n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~------------~aV---Iea-Ga---- 232 (2102)
T PLN03200 175 CGSTD-GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-SI------------SKV---LDA-GA---- 232 (2102)
T ss_pred hcCcc-chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HH------------HHH---HHC-CC----
Confidence 43322 1111112 23789999999999999999888777655433322 01 111 110 00
Q ss_pred CCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1972)
Q Consensus 510 ~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1972)
T Consensus 233 -------------------------------------------------------------------------------- 232 (2102)
T PLN03200 233 -------------------------------------------------------------------------------- 232 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHhhccCcHHHHHhhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHH
Q 000167 590 SLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668 (1972)
Q Consensus 590 s~ee~e~~~~~ll~~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~ 668 (1972)
-+.+++.|.+ .+-..|.+|.-.|..+..+.. ...+.++. ..++..|.
T Consensus 233 -------------VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~LI 280 (2102)
T PLN03200 233 -------------VKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPALI 280 (2102)
T ss_pred -------------HHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHHH
Confidence 0234445543 334567777766665543211 11111111 00111111
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHH
Q 000167 669 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1972)
Q Consensus 669 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~ 748 (1972)
.++.. +. +.++ ..-...-+++.|.-+|..+|.-. ..++..+...+.......+...++..|..++..
T Consensus 281 ~lL~s-p~--~e~~--------~~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 281 NATVA-PS--KEFM--------QGEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHhC-cc--hhhh--------ccccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 11110 00 0000 00000112445555555555432 234444444432233555666777778777765
Q ss_pred hCCCC-----CChhhHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCC
Q 000167 749 FGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1972)
Q Consensus 749 fG~~~-----l~~k~li~~l~~~gL~~sn~~-VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~ 822 (1972)
+.... ++...+.+.+.++ +.+.++. |.+.+..++..+| |+. .+.+.|.+. +
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~----------~l~~~L~~~-----d---- 404 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNA----------YLSRKLNHA-----E---- 404 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CCh----------HHHHHHHhc-----c----
Confidence 54321 2223344566677 7888776 4777777766655 221 111122110 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh
Q 000167 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1972)
Q Consensus 823 ~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (1972)
..+-++..+...+-..+.++...|..++...+..++.-.-...++.|..
T Consensus 405 -------------------------------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~ 453 (2102)
T PLN03200 405 -------------------------------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLIS 453 (2102)
T ss_pred -------------------------------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHH
Confidence 0012444445555567777777777776431111110000234677888
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----c--hhhHH
Q 000167 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----L--DKMVP 974 (1972)
Q Consensus 903 ~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-----l--~~ll~ 974 (1972)
.|...+..++..|+.+++.|+..-...-... -...+|.+++.|...+..+++.|..+|..+..+-. + ...+|
T Consensus 454 LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 454 LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVP 533 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHH
Confidence 8887888899999999998875322111111 13589999999999999999999899988775321 1 24677
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhcc
Q 000167 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1972)
Q Consensus 975 ~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~ 1054 (1972)
.|...|++. ++..|..++..|...+... ....+++++..|...++.+...+..+++.+......+.+.... .
T Consensus 534 pLV~LL~sg--d~~~q~~Aa~AL~nLi~~~-----d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g-~ 605 (2102)
T PLN03200 534 ALLWLLKNG--GPKGQEIAAKTLTKLVRTA-----DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG-S 605 (2102)
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-h
Confidence 888888876 5788888777777654421 1235567777787778888888888887776655544322211 0
Q ss_pred CChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcccccchhhhhhhhcccc
Q 000167 1055 IQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134 (1972)
Q Consensus 1055 L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1972)
........+.+.++..
T Consensus 606 ~~~ggL~~Lv~LL~sg---------------------------------------------------------------- 621 (2102)
T PLN03200 606 AANDALRTLIQLLSSS---------------------------------------------------------------- 621 (2102)
T ss_pred hccccHHHHHHHHcCC----------------------------------------------------------------
Confidence 0111222222222110
Q ss_pred CCCChHHhh-hhhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCcchhh-HHHHHH-H
Q 000167 1135 KDSNKEDRE-RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD-IIEVLD-I 1211 (1972)
Q Consensus 1135 ~~~~k~~R~-~~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~-~i~~lD-l 1211 (1972)
.+..+. ....+ +++-..+.+..+.+- +...+ +-++.+|.+.++..+.++.-.|...+.+.... .....+ =
T Consensus 622 ---s~~ikk~Aa~iL-snL~a~~~d~~~avv--~agaI-pPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G 694 (2102)
T PLN03200 622 ---KEETQEKAASVL-ADIFSSRQDLCESLA--TDEII-NPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED 694 (2102)
T ss_pred ---CHHHHHHHHHHH-HHHhcCChHHHHHHH--HcCCH-HHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 000000 00000 112223334333220 11223 35888889999998888887777766543322 111111 1
Q ss_pred HHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhCCChHHHHHHHHHHHHHHhhcCCccc
Q 000167 1212 LLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291 (1972)
Q Consensus 1212 llk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~Gd~k~~vr~~v~~il~~~~~v~~~sk 1291 (1972)
.++.++--+.+.+..+...+++.|..++..-... .+.=..-.||.|+.-+.+..+.+|+..-..+-++|.-+|...
T Consensus 695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA----AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH----HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 3333333457889999999999988765422111 111123468999888877778899999999999999999877
Q ss_pred cH----------HHHHhhhcCCChhhH--HHHHHHHHHHHHh-hCCCcccc--------cchHHHHHhhhcCCchHHHHH
Q 000167 1292 TL----------PYILEGLRSKNNRTR--IECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDGEIRKA 1350 (1972)
Q Consensus 1292 vf----------~~l~~gl~sKN~r~R--~ecl~~l~~li~~-~G~~~~~~--------~k~l~~ia~~i~drd~~VR~a 1350 (1972)
+| .-|++-|++-|.+.- .|.|+.|+.+... +|..-..| +-.|..+..|+.+-++.|-..
T Consensus 771 ~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~k 850 (2102)
T PLN03200 771 VLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDK 850 (2102)
T ss_pred HHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHH
Confidence 44 334455677776554 4699999988873 34332111 134677888899999999999
Q ss_pred HHHHHHHHHHHhCHHHHHHhhc---CCHHHHHhHHHHHHhh
Q 000167 1351 ALNTLATGYKILGEDIWRYVGK---LTDAQKSMLDDRFKWK 1388 (1972)
Q Consensus 1351 Al~~l~~~y~~~G~~v~~~vg~---ls~~~~s~l~er~kr~ 1388 (1972)
|+..|. .+|+|+-. .+|+ =.++-.+.|-.|+=.+
T Consensus 851 ai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 851 AIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 999998 45666421 2232 2445566777777654
No 18
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3.7e-09 Score=131.92 Aligned_cols=587 Identities=15% Similarity=0.151 Sum_probs=355.2
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhchhhh--hhhHHHHHHH
Q 000167 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (1972)
Q Consensus 300 keR~eaL~~L~~l~~--~~ki~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~LL~ 373 (1972)
-.|...|+.|.-++. .|......+.+++-++..... +.+..|+..|.+|+-.--.-.+..|... ...++..+.+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 467788888887775 233222345666666555443 7777788888777755444445566533 4467778888
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCC-----hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh-c-------------
Q 000167 374 KLKEKKPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET-S------------- 434 (1972)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~~~~~-----l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~-~------------- 434 (1972)
...-....|+.|+..||..|+.-.... .+.++..-+.++++.|..|..++..|-..+.+. .
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888888999999999999988641111 234566667889999999999999998855432 1
Q ss_pred -Chh--HHH-HhhhhHHHHHHHHhc-------CCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcC
Q 000167 435 -SKA--AVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1972)
Q Consensus 435 -~~~--~l~-~~l~~l~p~l~k~l~-------Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (1972)
++. .+. ..++.++|.|.+.|. |-+=.+-.+|-.||..+.+++|+..+++.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl------------------ 366 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL------------------ 366 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH------------------
Confidence 110 111 234567777777662 112245566777777777777765322111
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1972)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~ 583 (1972)
T Consensus 367 -------------------------------------------------------------------------------- 366 (859)
T KOG1241|consen 367 -------------------------------------------------------------------------------- 366 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc--hhH-HHHHHHHhcCCCCccchHHHH
Q 000167 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QSV-EILVRLVCMLPGWSEKNVQVQ 660 (1972)
Q Consensus 584 ~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~--~~~-~~lv~~L~~~p~~~DsN~qV~ 660 (1972)
+=+.+.+.+.+|+.|.+|+..+++++++..+.. +.. +.+..++. ...|++..|
T Consensus 367 --------------------~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~---lm~D~sl~V- 422 (859)
T KOG1241|consen 367 --------------------PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN---LMSDPSLWV- 422 (859)
T ss_pred --------------------HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH---HhcCchhhh-
Confidence 123346777899999999999999998854321 111 11111110 112333222
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHH
Q 000167 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGIL 740 (1972)
Q Consensus 661 ~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~ 740 (1972)
+++..+.++.+++-+.+.... ..-+..++..++.++ +..|+|...++.
T Consensus 423 ------------------kdTaAwtlgrI~d~l~e~~~n------------~~~l~~~l~~l~~gL--~DePrva~N~CW 470 (859)
T KOG1241|consen 423 ------------------KDTAAWTLGRIADFLPEAIIN------------QELLQSKLSALLEGL--NDEPRVASNVCW 470 (859)
T ss_pred ------------------cchHHHHHHHHHhhchhhccc------------HhhhhHHHHHHHHHh--hhCchHHHHHHH
Confidence 234555555555544421110 111233455555554 568999999988
Q ss_pred HHHHHHHHhC---CCC----CC---hhhHHHHHHhc-CCCC-CchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHH
Q 000167 741 WMVSAVEDFG---VSH----LK---LKDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSA 808 (1972)
Q Consensus 741 ~L~~~i~~fG---~~~----l~---~k~li~~l~~~-gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~ 808 (1972)
.+..+.+... ... .. ...++.-+.+. -..+ ...+.|.+|.+.|++|-++...+..+.+.++-+.+++.
T Consensus 471 Af~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~k 550 (859)
T KOG1241|consen 471 AFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEK 550 (859)
T ss_pred HHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 8877776432 211 11 12233333321 0112 33579999999999999999888777777777777777
Q ss_pred HHHHHhcCCCCCCCCCCCc-ccccccc-----C---CCCCCCCCCCCcccccccccHHHHHhcCCC-CHHHHHHHHHHHH
Q 000167 809 LDAEYEKNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVN 878 (1972)
Q Consensus 809 Le~efek~~~~~~~~p~r~-~r~~~~~-----~---s~~~~~~d~lprvdIs~~l~~~ll~~l~d~-~Wk~R~eale~l~ 878 (1972)
|+.-++..... -..|. ...=++. + ...+ . .+-.+++.|...|+..++.+ .--+-.+|+-++.
T Consensus 551 l~q~i~~~~l~---~~dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~ 622 (859)
T KOG1241|consen 551 LDQTISSQILS---LADRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVS 622 (859)
T ss_pred HHHHHHHHhcc---HhhHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 77666511100 00000 0000000 0 0000 0 12244566777788877773 4455678888888
Q ss_pred HHHHHccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcH--HHHHH
Q 000167 879 KILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMREC 955 (1972)
Q Consensus 879 ~ll~~a~~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~--~Vr~A 955 (1972)
.++...++.+.... ..+.+.|..-| +-....|...|+.+++.|+.+|+.+|-+|+..++..++++|....- .|.-+
T Consensus 623 tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~ 701 (859)
T KOG1241|consen 623 TLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPA 701 (859)
T ss_pred HHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccch
Confidence 88875433333322 44555555556 4456778899999999999999999999999999999999997654 47777
Q ss_pred HHHHHHHHHHhcC--chhhHHHHHHHHhcCC-------------CChhHHHHHHHHHHHHhccCCC---CCChhhhHHHH
Q 000167 956 TLTVLDAWLAAVH--LDKMVPYVTTALTDAK-------------LGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPA 1017 (1972)
Q Consensus 956 a~~aL~~i~~~~~--l~~ll~~l~~~L~~~~-------------~~~~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl 1017 (1972)
...+...|+-.+| ....+..+...|+... +.-.+|..+++.-.-.+..... ...+.+.+.++
T Consensus 702 IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 702 ILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHH
Confidence 8888999988887 4556665555554211 0124777777776666665553 22233444444
Q ss_pred Hhh---c--CCC-CHHHHHHHHHHHHHHHHHcChhHHH
Q 000167 1018 SIA---M--TDK-SSDVRKAAEACIVEILRAGGQETIE 1049 (1972)
Q Consensus 1018 ~~~---L--~D~-~~dVR~aA~~~l~~l~~~~G~~~~~ 1049 (1972)
++- + ++. +..+-.+|...++-+...+|.+.+.
T Consensus 782 ~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 782 ISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 442 2 333 3566777788888999999976544
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.29 E-value=2.6e-07 Score=114.21 Aligned_cols=721 Identities=15% Similarity=0.192 Sum_probs=388.0
Q ss_pred hhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhch------------
Q 000167 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAADA------------ 85 (1972)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~v~~~~~------------ 85 (1972)
+++.-.--.|.+|+..|.+...+- ...|.|+++.+++.. -+.|.---..-+.++-++.=++-.-.
T Consensus 371 kvKNG~ppmRk~~LR~ltdkar~~--ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViep 448 (1172)
T KOG0213|consen 371 KVKNGTPPMRKSALRILTDKARNF--GAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEP 448 (1172)
T ss_pred hhcCCCchhHHHHHHHHHHHHHhh--ccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeec
Confidence 455666777888888888776543 245666666665544 35555555555555544443222100
Q ss_pred -----hh-hhh-hHHHHHHHHHhhc------------CC-ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChhh
Q 000167 86 -----DA-GRY-AKEVCDAIAAKCL------------TG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAKA 144 (1972)
Q Consensus 86 -----~~-~~~-~~~v~~~LveK~l------------~~-k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv 144 (1972)
+. ++. ..+|+..|+..|. .. .+=+|+-.-..+-.++..-....++..|.... +.|.|+.
T Consensus 449 llided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqa 528 (1172)
T KOG0213|consen 449 LLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQA 528 (1172)
T ss_pred ceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhh
Confidence 10 111 1235555544431 11 12233322222222222222234444443333 4569999
Q ss_pred HHHHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHH
Q 000167 145 VVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVE 223 (1972)
Q Consensus 145 ~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~ 223 (1972)
+--|+.++.++-.-.|..+++ ++++++.+...+.|....||--+...+..++.-.++= .-.-|+. .++-|-+.
T Consensus 529 RhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Py--gie~fDs----VlkpLwkg 602 (1172)
T KOG0213|consen 529 RHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPY--GIEQFDS----VLKPLWKG 602 (1172)
T ss_pred hchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCc--chHHHHH----HHHHHHHH
Confidence 999999999998889998887 7899999999999999999999888888888887762 1111221 11222221
Q ss_pred HHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHH
Q 000167 224 LVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERK 303 (1972)
Q Consensus 224 f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~ 303 (1972)
+....| +.... . -.+.|.- -..+|+ . + +.+|. |
T Consensus 603 ir~hrg-------------k~laa-f-LkAigyl---------iplmd~------e-----y--a~yyT---------r- 635 (1172)
T KOG0213|consen 603 IRQHRG-------------KELAA-F-LKAIGYL---------IPLMDA------E-----Y--ASYYT---------R- 635 (1172)
T ss_pred HHHccC-------------hHHHH-H-HHHHhhc---------cccccH------H-----H--HHHhH---------H-
Confidence 111100 00000 0 0000000 000000 0 0 11111 1
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHH-
Q 000167 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTV- 382 (1972)
Q Consensus 304 eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V- 382 (1972)
|++. .|.+-++...--.-...+++++.+|..-|..=+-.-..++|.+|..|....-..
T Consensus 636 evml---------------------il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~d 694 (1172)
T KOG0213|consen 636 EVML---------------------ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALD 694 (1172)
T ss_pred HHHH---------------------HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhcc
Confidence 2222 222222211111111223333444433332211123457888888776543322
Q ss_pred ---HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhcCCC
Q 000167 383 ---AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGT 458 (1972)
Q Consensus 383 ---~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~Ds~ 458 (1972)
-..+..+-..++.. .+.+.++..+..-+++.+++-|.-++..+.+.+...+...+. +.-..++..++-++.+..
T Consensus 695 rr~ykqlv~ttv~ia~K--vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt 772 (1172)
T KOG0213|consen 695 RRNYKQLVDTTVEIAAK--VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT 772 (1172)
T ss_pred ccchhhHHHHHHHHHHH--hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc
Confidence 01122333445544 555788888999999999999999999999999988766554 334556777766665444
Q ss_pred hHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccccccccc
Q 000167 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (1972)
Q Consensus 459 ~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~ 538 (1972)
.++- ....+|+++...+|.+ +.+|++.+-......+ .. ++ +.|+..+
T Consensus 773 t~d~-vml~gfg~V~~~lg~r-~kpylpqi~stiL~rL----nn---------ks------------------a~vRqqa 819 (1172)
T KOG0213|consen 773 TEDS-VMLLGFGTVVNALGGR-VKPYLPQICSTILWRL----NN---------KS------------------AKVRQQA 819 (1172)
T ss_pred cchh-hhhhhHHHHHHHHhhc-cccchHHHHHHHHHHh----cC---------CC------------------hhHHHHH
Confidence 4442 6788999999999987 6788887644322222 11 00 0011111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHH
Q 000167 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 618 (1972)
Q Consensus 539 ~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~R 618 (1972)
+...+...+. .+. --| +.+...++--+.+.|....-..=
T Consensus 820 adlis~la~V-------------------------lkt-------------c~e---e~~m~~lGvvLyEylgeeypEvL 858 (1172)
T KOG0213|consen 820 ADLISSLAKV-------------------------LKT-------------CGE---EKLMGHLGVVLYEYLGEEYPEVL 858 (1172)
T ss_pred HHHHHHHHHH-------------------------HHh-------------ccH---HHHHHHhhHHHHHhcCcccHHHH
Confidence 1000000000 000 001 11111222222222222111111
Q ss_pred HHHHHHHHHHHHh--ccccchh-HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHhhh
Q 000167 619 LEAISSLRQQVEA--VQNLDQS-VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF-P-KKCVVLCLLGISERV 693 (1972)
Q Consensus 619 l~a~e~L~~~v~~--~~~~~~~-~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKl 693 (1972)
-.-+..+..++.. +....+. .++|.++. |-++..+-+|+..+++++..++.+.+.+ + +.|+-.| =.|+|-|
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrlt---PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc-feLlelL 934 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLT---PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC-FELLELL 934 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccch---HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHH
Confidence 1122223333333 2222122 23333332 5567888899999999999999987765 3 3444444 4667766
Q ss_pred cc-hh-hhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCC
Q 000167 694 AD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSS 771 (1972)
Q Consensus 694 gd-~K-~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~s 771 (1972)
-. .| .|..|.+++.-|++++||+-|+..|+..+.-+ .-..|..+--.++-+-+..|.- .+++.+..- ..-+
T Consensus 935 kahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~pF-----tVLPalmne-YrtP 1007 (1172)
T KOG0213|consen 935 KAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGPF-----TVLPALMNE-YRTP 1007 (1172)
T ss_pred HHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCch-----hhhHHHHhh-ccCc
Confidence 54 44 79999999999999999999999999887211 1111222222222222233331 244444443 6778
Q ss_pred chhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCccccc
Q 000167 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (1972)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs 851 (1972)
+.+|.+...+.+.-||.|+|+.-++|+-.+
T Consensus 1008 e~nVQnGVLkalsf~FeyigemskdYiyav-------------------------------------------------- 1037 (1172)
T KOG0213|consen 1008 EANVQNGVLKALSFMFEYIGEMSKDYIYAV-------------------------------------------------- 1037 (1172)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHhhhHHHHh--------------------------------------------------
Confidence 889999999999999999997666654222
Q ss_pred ccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhH
Q 000167 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931 (1972)
Q Consensus 852 ~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~ 931 (1972)
+|-+.+.+-|.+---|.-|+..+.-+.-+ +. |-..+
T Consensus 1038 ---~PlleDAlmDrD~vhRqta~~~I~Hl~Lg------~~-----------------------------------g~g~e 1073 (1172)
T KOG0213|consen 1038 ---TPLLEDALMDRDLVHRQTAMNVIKHLALG------VP-----------------------------------GTGCE 1073 (1172)
T ss_pred ---hHHHHHhhccccHHHHHHHHHHHHHHhcC------CC-----------------------------------CcCcH
Confidence 23333334444444455555555443321 11 12223
Q ss_pred hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000167 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1972)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~ 998 (1972)
..+..++.-+.-..=|..++|.++...|+..+...+|...++.++..+|=++ .-.+|..-|....
T Consensus 1074 da~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHP--arkVR~~yw~vyn 1138 (1172)
T KOG0213|consen 1074 DALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFHP--ARKVRKRYWTVYN 1138 (1172)
T ss_pred HHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccCc--HHHHHHHHHHHHH
Confidence 3334444445555568899999999999999999999999999999998776 3456776665553
No 20
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.16 E-value=2.3e-08 Score=119.66 Aligned_cols=212 Identities=19% Similarity=0.275 Sum_probs=173.4
Q ss_pred chhhhhc-cCChHHHHHHHHHHHHHhcCC--CCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhchhhhh
Q 000167 289 GFWEGVK-ATKWSERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (1972)
Q Consensus 289 ~f~~~l~-s~kWkeR~eaL~~L~~l~~~~--ki~~~~y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (1972)
+....+. +..-.+|++|+.+|..+.... .+....|.+|+..+..++.| .+......|++.|+.+++.-...|..+.
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst 369 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST 369 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence 3334443 458889999999999876432 34456688999999999998 7888899999999999999999999999
Q ss_pred hhHHHHHHHHhccCcHHH-HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 365 RFLLPVLLEKLKEKKPTV-AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 365 ~~llp~LL~klkdkk~~V-~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
+..+-.+|+..+|....| +.|...|+..+..+ .++. .+.-|...+.+-.-..-..++..++++++..+...+...+
T Consensus 370 E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~--~P~~-~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll 446 (516)
T KOG2956|consen 370 EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH--LPLQ-CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL 446 (516)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh--Cchh-HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence 999999999999987755 56666667666665 3333 3333333333344444457788999999999999999999
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcC
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (1972)
+.++|.++++.+.+...||++|.-||..+...+|++.+.|++.+|...+++.|.=|++.+
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988899999999999999998888764
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.7e-05 Score=97.27 Aligned_cols=566 Identities=16% Similarity=0.147 Sum_probs=328.5
Q ss_pred ccCChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-------Hhhhchhhhh-
Q 000167 295 KATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-------GLRTHFSGSS- 364 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~-------~L~~~f~~~~- 364 (1972)
.+.+=+.|..|+..|.+|.+- ..+.+---..++..-...+..-|-.|...|+..-..++. ..+..++.+.
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 567778899999999998741 111111112344444556667777787777655543332 2233333333
Q ss_pred -----------hhHHHHHHHHhcc--C-----cHHHHHHHHHHHHHHHHhcC--CChHhHHHHHHHHhhcCChHHHHHHH
Q 000167 365 -----------RFLLPVLLEKLKE--K-----KPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTL 424 (1972)
Q Consensus 365 -----------~~llp~LL~klkd--k-----k~~V~~aa~~aL~al~~~~~--~~l~~il~~l~~~l~~Knp~vR~~~l 424 (1972)
..++|.||+.+-. . .=++..|+..||.-+... | .=+.-|+|-|.+.+++.+|.-|..+.
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-~~D~Iv~~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-VGDDIVPHVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-hcccchhhhHHHHHHhcCCcchhhhhHHH
Confidence 3789999998732 1 225678888898877664 2 11334556666677788999999888
Q ss_pred HHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCC
Q 000167 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504 (1972)
Q Consensus 425 ~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~ 504 (1972)
-.+...+..-.+..+.+.....+|.+...+.|+.--||+.+.-+|+.+..++.+...+... -..++.-++.+..
T Consensus 386 mAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~------l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 386 MAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL------LQSKLSALLEGLN 459 (859)
T ss_pred HHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh------hhHHHHHHHHHhh
Confidence 8888888766666777888999999999999999999999999999999988864332111 1123333333321
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 505 GDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDV 584 (1972)
Q Consensus 505 ~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~ 584 (1972)
+. |..+....-. .. +.+.. .+-+ ++ +....++
T Consensus 460 De-Prva~N~CWA-----------f~-~Laea---------~~eA--------~~---------------s~~qt~~--- 491 (859)
T KOG1241|consen 460 DE-PRVASNVCWA-----------FI-SLAEA---------AYEA--------AV---------------SNGQTDP--- 491 (859)
T ss_pred hC-chHHHHHHHH-----------HH-HHHHH---------HHHh--------cc---------------CCCCCCc---
Confidence 10 0000000000 00 00000 0000 00 0000000
Q ss_pred CCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcC---CCCccchHHHHH
Q 000167 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQ 661 (1972)
Q Consensus 585 ~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~---p~~~DsN~qV~~ 661 (1972)
.+ +..+.|+.-|.+. +.-+++| ...
T Consensus 492 ----~t----------------------------------------------~~y~~ii~~Ll~~tdr~dgnqsN--LR~ 519 (859)
T KOG1241|consen 492 ----AT----------------------------------------------PFYEAIIGSLLKVTDRADGNQSN--LRS 519 (859)
T ss_pred ----cc----------------------------------------------hhHHHHHHHHHhhccccccchhh--HHH
Confidence 00 0111222222111 1224555 557
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHH
Q 000167 662 QVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 741 (1972)
Q Consensus 662 ~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~ 741 (1972)
.++++|..++..+++-....+..+...+.+||... +. .+++...-.++--.++.--+.+
T Consensus 520 AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~---------i~------------~~~l~~~dr~q~~eLQs~Lc~~ 578 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQT---------IS------------SQILSLADRAQLNELQSLLCNT 578 (859)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH---------HH------------HHhccHhhHHHHHHHHHHHHHH
Confidence 78999999998755332233333444444444331 11 1111111111112234445677
Q ss_pred HHHHHHHhCCCCCC-hhhHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCC
Q 000167 742 MVSAVEDFGVSHLK-LKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (1972)
Q Consensus 742 L~~~i~~fG~~~l~-~k~li~~l~~~gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~ 819 (1972)
|..++..+|..... ...++..+... ++. ....|-+.|.-.+++|...+|..|..|+..++|-+...+...-+
T Consensus 579 Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e----- 652 (859)
T KOG1241|consen 579 LQSIIRKVGSDIREVSDQIMGLFLRI-FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE----- 652 (859)
T ss_pred HHHHHHHccccchhHHHHHHHHHHHH-HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH-----
Confidence 77788888874322 34566666666 676 45568899999999999999999999998888887766633211
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHH
Q 000167 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGG 899 (1972)
Q Consensus 820 ~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~ 899 (1972)
+.+-..++--+..+...-...|.|.. .+++..
T Consensus 653 -----------------------------------------------~qVc~~aVglVgdl~raL~~~i~py~-d~~mt~ 684 (859)
T KOG1241|consen 653 -----------------------------------------------YQVCAAAVGLVGDLARALEDDILPYC-DELMTV 684 (859)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence 12222333344445443333445543 678888
Q ss_pred HHhccccc--hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh---CCCc--------HHHHHHHHHHHHHHHHh
Q 000167 900 LRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDNK--------KHMRECTLTVLDAWLAA 966 (1972)
Q Consensus 900 L~~~L~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L---~D~k--------~~Vr~Aa~~aL~~i~~~ 966 (1972)
|.+.|+.. ..+|.-.-+.+.+.||-++|.+|++|+..++|-+-..- .|.. ..+|+++.++-..++.-
T Consensus 685 Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qg 764 (859)
T KOG1241|consen 685 LVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQG 764 (859)
T ss_pred HHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888554 45677777999999999999999999999999887655 1221 24788888888888776
Q ss_pred cC-------chhhHHHHHHHHh----cCCCChhHHHHHHHHHHHHhccCCCC---C-ChhhhHHH-HHhhcCCCCHHHHH
Q 000167 967 VH-------LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLTGLSGF---P-DAAHLLKP-ASIAMTDKSSDVRK 1030 (1972)
Q Consensus 967 ~~-------l~~ll~~l~~~L~----~~~~~~~~R~~~l~~L~~~l~~~~~~---~-~~~~ll~p-l~~~L~D~~~dVR~ 1030 (1972)
++ +..++|.|+..+. ++..+-.+-..+++.+.......+.. . ...++++- |..+..-+....|+
T Consensus 765 lk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~ 844 (859)
T KOG1241|consen 765 LKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKD 844 (859)
T ss_pred hhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHH
Confidence 65 2345565555553 22212234456677776666555531 1 12345555 55566666666777
Q ss_pred HHHHHHHHHHHH
Q 000167 1031 AAEACIVEILRA 1042 (1972)
Q Consensus 1031 aA~~~l~~l~~~ 1042 (1972)
.|+-+...+-++
T Consensus 845 ~A~wa~e~ikr~ 856 (859)
T KOG1241|consen 845 LARWATEEIKRQ 856 (859)
T ss_pred HHHHHHHHHHHH
Confidence 777666655443
No 22
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.11 E-value=8.4e-07 Score=108.05 Aligned_cols=684 Identities=17% Similarity=0.227 Sum_probs=372.8
Q ss_pred hhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhch------------
Q 000167 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAADA------------ 85 (1972)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~v~~~~~------------ 85 (1972)
+++.-.-..|.+|+..|.+...+- .....|+++.+++.. -+.|.---..-+-++-++.=+.-...
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~f--g~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~p 253 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNF--GAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGP 253 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeec
Confidence 456667788899988888765432 223355555554433 35555444444444444433222110
Q ss_pred -----hhhhh--hHHHHHHHHHhhc-C----C-C-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHH-hhcCChhh
Q 000167 86 -----DAGRY--AKEVCDAIAAKCL-T----G-R-------PKTVEKAQAVFMLWVELEAVDVFLDVMEKA-IKNKVAKA 144 (1972)
Q Consensus 86 -----~~~~~--~~~v~~~LveK~l-~----~-k-------~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~-~~~KnpKv 144 (1972)
+..+. ..+|+..|+..|. + + | +=+|+-.-...-.++..-..+.++..|... -+.|.|+.
T Consensus 254 llided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~a 333 (975)
T COG5181 254 LLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEA 333 (975)
T ss_pred cccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhh
Confidence 11111 2355556655542 1 0 1 222332222222222222334444444333 35679999
Q ss_pred HHHHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchh---hHH---HhhhChHHHH
Q 000167 145 VVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV---KTI---LFEKMRDTMK 217 (1972)
Q Consensus 145 ~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l---~~~---l~~~Lk~~q~ 217 (1972)
+-.|+.++.++..-.|..+++ ++++++.+.+++.|...-||=.+...+-.++...|+=-+ ... |.+.....-=
T Consensus 334 RhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrg 413 (975)
T COG5181 334 RHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRG 413 (975)
T ss_pred hchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998876 799999999999999999999988888888888886211 110 1111111111
Q ss_pred HHHHHHHHhccCCCCCCc-------chhhhhhHhhhhhccccCCCCCCCCCCC---------CCCCCCCCCCCCCCcccc
Q 000167 218 KELEVELVNVSGTARPTR-------KIRAEQDKELGQELISEDVGPGPSEEST---------ADVPPEIDEYELVDPVDI 281 (1972)
Q Consensus 218 keLe~~f~k~~~~~~P~R-------~~rs~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~iD~~dl~~~vdI 281 (1972)
++|-..+ |.-|..-|.. ++|.... -.-.+.. .++++.. =...+.++|+-+.+.|
T Consensus 414 k~l~sfL-kA~g~iiplm~peYa~h~tre~m~-iv~ref~------spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v-- 483 (975)
T COG5181 414 KELVSFL-KAMGFIIPLMSPEYACHDTREHME-IVFREFK------SPDEEMKKDLLVVERICDKVGTDTPWKLRDQV-- 483 (975)
T ss_pred chHHHHH-HHhccccccCChHhhhhhHHHHHH-HHHHHhC------CchhhcchhHHHHHHHHhccCCCCHHHHHHhh--
Confidence 1121111 1112222211 0111100 0000000 0000000 0011223444333322
Q ss_pred cccCcccchhhhhccCChHHHHHH---------HHH--HHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 000167 282 LTPLEKSGFWEGVKATKWSERKDA---------VAE--LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIG 350 (1972)
Q Consensus 282 l~kl~~~~f~~~l~s~kWkeR~ea---------L~~--L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~ 350 (1972)
. +.| -+..|.+|.+. +.. +.+.... ..+++.+..-+.|.--.-+..++.++.
T Consensus 484 ----~-pef----F~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--------~~v~~kil~~~~De~ep~r~m~a~~vs 546 (975)
T COG5181 484 ----S-PEF----FSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--------PRVSRKILEYYSDEPEPYRKMNAGLVS 546 (975)
T ss_pred ----c-HHh----hchHHHhhhcccccccceeehhHHHHHHHcCC--------hHHHHHHHhhccCCcchhhhhhhHHHH
Confidence 1 244 35679888765 111 1112111 234555555566666556666667777
Q ss_pred HHHHHhhh-chh-hhhhhHHHHHHHHhccCcHHHHH------HHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHH
Q 000167 351 NLARGLRT-HFS-GSSRFLLPVLLEKLKEKKPTVAE------SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSL 422 (1972)
Q Consensus 351 ~La~~L~~-~f~-~~~~~llp~LL~klkdkk~~V~~------aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~ 422 (1972)
.+...++. +|+ .....++-.++..|.+....+.- +...++.... .-.+..|+..++.-|+||.|.+|+.
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~---kp~l~~ivStiL~~L~~k~p~vR~~ 623 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRG---KPHLSMIVSTILKLLRSKPPDVRIR 623 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhcc---CcchHHHHHHHHHHhcCCCccHHHH
Confidence 77776653 454 55667788888888776543321 1112222221 2457789999999999999999998
Q ss_pred HHHHHHHH---HHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHH
Q 000167 423 TLNWVTFC---IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (1972)
Q Consensus 423 ~l~~L~~~---l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~ 499 (1972)
++..+..+ +..|.... .+..+--+|...|+.-+|+|=-.-..|+..+..+.|.+.+
T Consensus 624 aadl~~sl~~vlk~c~e~~---~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m------------------ 682 (975)
T COG5181 624 AADLMGSLAKVLKACGETK---ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM------------------ 682 (975)
T ss_pred HHHHHHHHHHHHHhcchHH---HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc------------------
Confidence 87776654 33343322 2233445666777777777644444444444444443211
Q ss_pred HhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 500 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 579 (1972)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~ 579 (1972)
.||..
T Consensus 683 ----------------------------------------------qpPi~----------------------------- 687 (975)
T COG5181 683 ----------------------------------------------QPPIS----------------------------- 687 (975)
T ss_pred ----------------------------------------------CCchh-----------------------------
Confidence 01100
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHH
Q 000167 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQV 659 (1972)
Q Consensus 580 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV 659 (1972)
+++| .+. |-++..+.+|
T Consensus 688 --------------------~ilP-~lt------------------------------------------PILrnkh~Kv 704 (975)
T COG5181 688 --------------------GILP-SLT------------------------------------------PILRNKHQKV 704 (975)
T ss_pred --------------------hccc-ccc------------------------------------------HhhhhhhHHH
Confidence 0000 000 1112223344
Q ss_pred HHHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHhhhcc-hh-hhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHH
Q 000167 660 QQQVIEVINYLAATATKF-P-KKCVVLCLLGISERVAD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735 (1972)
Q Consensus 660 ~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKlgd-~K-~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~ 735 (1972)
....+.++..+..+.+.. + +.|+-.| =.|+|-|.. .| .|..|.+++.-++++++|+-|+..++..+. ...-..|
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRIc-feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-vqeRq~R 782 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRIC-FELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-VQERQQR 782 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-HHHHHhh
Confidence 444445555555544432 2 2333333 356665544 33 789999999999999999999999998872 1111122
Q ss_pred HHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhc
Q 000167 736 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (1972)
Q Consensus 736 ~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek 815 (1972)
..+--.++-+-+-.|.- .+++.+..- ...++.+|.+...+.++-||.++|+.-++|.-.
T Consensus 783 vctsvaI~iVae~cgpf-----sVlP~lm~d-Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~--------------- 841 (975)
T COG5181 783 VCTSVAISIVAEYCGPF-----SVLPTLMSD-YETPEANVQNGVLKAMCFMFEYIGQASLDYVYS--------------- 841 (975)
T ss_pred hhhhhhhhhhHhhcCch-----hhHHHHHhc-ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 22222333333333432 345555444 788899999999999999999999876666422
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhh
Q 000167 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (1972)
Q Consensus 816 ~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~e 895 (1972)
|+|-+.+.+.|.+---|..|+.-+.-+.-.+ +.
T Consensus 842 --------------------------------------itPlleDAltDrD~vhRqta~nvI~Hl~Lnc-----~g---- 874 (975)
T COG5181 842 --------------------------------------ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC-----PG---- 874 (975)
T ss_pred --------------------------------------hhHHHHhhhcccchHHHHHHHHHHHHHhcCC-----CC----
Confidence 3343444555556666666666665554321 11
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHH
Q 000167 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 975 (1972)
Q Consensus 896 L~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~ 975 (1972)
-.-+..+..++..+.-..-|..+.|.++..++++.+...+|...++.+
T Consensus 875 --------------------------------tg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Y 922 (975)
T COG5181 875 --------------------------------TGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKY 922 (975)
T ss_pred --------------------------------cccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 111122223333444445578899999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHH
Q 000167 976 VTTALTDAKLGAEGRKDLFDWL 997 (1972)
Q Consensus 976 l~~~L~~~~~~~~~R~~~l~~L 997 (1972)
+...|=++ +..+|..-|.-.
T Consensus 923 v~qGLFHP--s~~VRk~ywtvy 942 (975)
T COG5181 923 VQQGLFHP--SSTVRKRYWTVY 942 (975)
T ss_pred HHHhccCc--hHHHHHHHHHHH
Confidence 99999876 456777665544
No 23
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.10 E-value=4.2e-07 Score=109.98 Aligned_cols=500 Identities=13% Similarity=0.117 Sum_probs=289.8
Q ss_pred HHHhc-ccCHHHHHHHHHHHHHHHHHhhhchh--hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHH
Q 000167 331 KKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 407 (1972)
Q Consensus 331 ~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~ 407 (1972)
....+ +....|+..|++|+-.=..-.+..|. -....++....+........+..++..|+..++.-......-.++.
T Consensus 183 ~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~ 262 (858)
T COG5215 183 MGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN 262 (858)
T ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 77777888888888775555566665 2355677888888888889999999999999875312233333333
Q ss_pred -----HHHHhhcCChHHHHHHHHHHHHHHHh-cChhH--------------HH-HhhhhHHHHHHHHhcC-------CCh
Q 000167 408 -----VKTSVKNKVPLVRSLTLNWVTFCIET-SSKAA--------------VL-KVHKDYVPICMECLND-------GTP 459 (1972)
Q Consensus 408 -----l~~~l~~Knp~vR~~~l~~L~~~l~~-~~~~~--------------l~-~~l~~l~p~l~k~l~D-------s~~ 459 (1972)
...++++.|-+|+.++..|-..+.+. ..-.- +. ...+.++|.|.++|.. -+=
T Consensus 263 aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW 342 (858)
T COG5215 263 ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW 342 (858)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 23567789999999999988555443 21110 00 1234566666666622 122
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccc
Q 000167 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (1972)
Q Consensus 460 ~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~ 539 (1972)
++-.+|..||..|....|+..++|.+
T Consensus 343 n~smaA~sCLqlfaq~~gd~i~~pVl------------------------------------------------------ 368 (858)
T COG5215 343 NPSMAASSCLQLFAQLKGDKIMRPVL------------------------------------------------------ 368 (858)
T ss_pred chhhhHHHHHHHHHHHhhhHhHHHHH------------------------------------------------------
Confidence 35556666776666666655443211
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHH
Q 000167 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (1972)
Q Consensus 540 s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 619 (1972)
+-+.+.+++.+|..|.
T Consensus 369 ----------------------------------------------------------------~FvEqni~~~~w~nre 384 (858)
T COG5215 369 ----------------------------------------------------------------GFVEQNIRSESWANRE 384 (858)
T ss_pred ----------------------------------------------------------------HHHHHhccCchhhhHH
Confidence 1123456777999999
Q ss_pred HHHHHHHHHHHhcccc--chh-HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcch
Q 000167 620 EAISSLRQQVEAVQNL--DQS-VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI 696 (1972)
Q Consensus 620 ~a~e~L~~~v~~~~~~--~~~-~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~ 696 (1972)
+|+..+++.+++.... ... .+.+..++. ...|+-..|.. +..+|+..|.+.+.+.
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n---~m~D~~l~vk~-------------------ttAwc~g~iad~va~~ 442 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIEN---EMSDSCLWVKS-------------------TTAWCFGAIADHVAMI 442 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHH---hcccceeehhh-------------------HHHHHHHHHHHHHHHh
Confidence 9999999998875431 111 111111111 12233333332 3344444444333321
Q ss_pred hhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCC--CC--h----hhHHHHHHh-cC
Q 000167 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH--LK--L----KDLIDFCKD-TG 767 (1972)
Q Consensus 697 K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~--l~--~----k~li~~l~~-~g 767 (1972)
-.. +.++ ..+.+..+-++ ..+|++...|......++..|.... ++ + ..++.-+.+ ..
T Consensus 443 i~p----------~~Hl--~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~ 508 (858)
T COG5215 443 ISP----------CGHL--VLEVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTE 508 (858)
T ss_pred cCc----------cccc--cHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 000 0001 11233333333 4678888888888888888776432 10 1 122222221 01
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCc
Q 000167 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR 847 (1972)
Q Consensus 768 L~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lpr 847 (1972)
+.....+.|.++...|++|..+..+.+.+.+.++-.-.++.|+.-..-.... .. .+|..
T Consensus 509 ~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~--------l~-----------~eD~~-- 567 (858)
T COG5215 509 LALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI--------LA-----------TEDQL-- 567 (858)
T ss_pred hhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh--------hh-----------hHHHH--
Confidence 2234456899999999999999988888877777777777666544321100 00 00000
Q ss_pred ccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccch-HHHHHHHHHHHHHHHHHc
Q 000167 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN-KNLVMATLITLGAVASAM 926 (1972)
Q Consensus 848 vdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN-~~V~~~Al~~l~~La~al 926 (1972)
+..++.. .-+.-+..++....+.|.+.. ..|+..|...|.... ..+-......|+.++..+
T Consensus 568 ------~~~elqS-----------N~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 568 ------LVEELQS-----------NYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred ------HHHHHHH-----------HHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 0111111 122345566654444455542 448888888775542 334456678899999999
Q ss_pred ChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 927 g~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
+..|++|+..|+|-+.+.|......|...|..-+..++..++-+- .+ ..+.+ ..-|.+++..
T Consensus 630 ~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df-~~-y~d~~-------------ms~LvQ~lss--- 691 (858)
T COG5215 630 EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF-NI-YADVL-------------MSSLVQCLSS--- 691 (858)
T ss_pred HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH-HH-HHHHH-------------HHHHHHHhcC---
Confidence 999999999999999999999999999999888888877766211 11 11111 1112222221
Q ss_pred CCChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1007 FPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1007 ~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
+.....++| +++|+.|-...+-.+-+..|..+|..
T Consensus 692 -~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L 727 (858)
T COG5215 692 -EATHRDLKPAILSVFGDIALAIGANFESYLDMIMML 727 (858)
T ss_pred -hhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 122345666 77777777666666666666666543
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=9.5e-08 Score=116.07 Aligned_cols=379 Identities=17% Similarity=0.210 Sum_probs=259.3
Q ss_pred cHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchh--HHHHHHHHhcC-CCCccchHHHHHHHHHHHHHHHHHcCCCch
Q 000167 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1972)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~--~~~lv~~L~~~-p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (1972)
++.+..+|.|+-+..|.+|.-+++.++++.-..+.. ..-++..|... -.-.+.|. ...+|-.+...+-..+.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456889999999999999999999999883222222 22333333210 00012221 12444444433333333223
Q ss_pred hhHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhcChh------HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCC
Q 000167 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1972)
Q Consensus 680 ~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~------~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~ 751 (1972)
.+...++++++..++|. ++|--|.+.|..++.....+ .++..+++.. .+...-|+ ++.+.+..++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 37788999999999985 78999999999999876543 3455555543 33333333 334445555554432
Q ss_pred ---CCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000167 752 ---SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1972)
Q Consensus 752 ---~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~ 828 (1972)
..+++..+++.+..- +-..||.+|..-..-+..|+..-+-.+-.|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 257888999999986 889999999887777766664433222233322
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCC--ChhhHHHHHHhcccc
Q 000167 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA--GTGELFGGLRGRLYD 906 (1972)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~--~~~eL~~~L~~~L~D 906 (1972)
+.+.++..++|.+-.+|.-.=..+.+++.+- +-.|. +|++.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 3345667777777777755444455555431 11221 478999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000167 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 976 (1972)
Q Consensus 907 sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~-~Vr~Aa~~aL~~i~~~~~---------l~~ll~~l 976 (1972)
++.-+...|+.+|.++..--|+++-+|...++..++.++.|+.. .++..+...-+.+...++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999877 577666555444444432 33677778
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 977 ~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1972)
...+.+. +-+.|.++++|+.-...+.+.. -+..++...+.+.|.|++.+|-..+-..+..++..-
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 8888876 5789999999999888777762 244555666899999999999999988888887543
No 25
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.05 E-value=4.6e-07 Score=110.26 Aligned_cols=620 Identities=16% Similarity=0.164 Sum_probs=331.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhc-
Q 000167 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN- 414 (1972)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~- 414 (1972)
|....+....-.+|..|+...|=.|. +..+=--+..+.+-||+-...|...+..+ .++.+++|.|.....+
T Consensus 257 ded~~~r~~g~eii~nL~~~~Gl~~~------vs~mrpDi~~~deYVRnvt~ra~~vva~a--lgv~~llpfl~a~c~Sr 328 (975)
T COG5181 257 DEDLKRRCMGREIILNLVYRCGLGFS------VSSMRPDITSKDEYVRNVTGRAVGVVADA--LGVEELLPFLEALCGSR 328 (975)
T ss_pred CccHHHhcccHHHHHHHHHHhcccee------eeeccCCcccccHHHHHHHHHHHHHHHHh--hCcHHHHHHHHHHhcCc
Confidence 44455555555555555553332111 01111113345667777777777777775 7889999999887775
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc---hhHHHhHhhccHH
Q 000167 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDDV 491 (1972)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge---~~~~~~l~~Ld~~ 491 (1972)
|+|+-|..+......+-.-.+.+. ..++..++..+.+++.|....||--+..+|..+.+.+|. +.|+..+.-|-..
T Consensus 329 kSw~aRhTgiri~qqI~~llG~s~-l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 329 KSWEARHTGIRIAQQICELLGRSR-LSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred cchhhhchhhHHHHHHHHHhCccH-HhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 589999877776665544444443 356788999999999999999999999999999998774 3344333332211
Q ss_pred HH----HHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccc-ccccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 492 RR----NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKK 566 (1972)
Q Consensus 492 ~~----kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~-~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~ 566 (1972)
.+ +-+...++..|-.-|-..|.-.- +. +.+-. -+.... +.|-
T Consensus 408 ~~~hrgk~l~sfLkA~g~iiplm~peYa~-----h~----tre~m~iv~ref------~spd------------------ 454 (975)
T COG5181 408 ASQHRGKELVSFLKAMGFIIPLMSPEYAC-----HD----TREHMEIVFREF------KSPD------------------ 454 (975)
T ss_pred HHhcCCchHHHHHHHhccccccCChHhhh-----hh----HHHHHHHHHHHh------CCch------------------
Confidence 00 01111111111111000000000 00 00000 000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhc----cCcHHHHHhhhcCChHHHHHHHHHHHHHH-------Hhcccc
Q 000167 567 DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS----LIPADTVGQLKSAVWKERLEAISSLRQQV-------EAVQNL 635 (1972)
Q Consensus 567 ~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~----ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v-------~~~~~~ 635 (1972)
++.-+.-+-.+..++.... ++-.++.--+++.-|..|.++-....+.+ ..+...
T Consensus 455 ---------------eemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~ 519 (975)
T COG5181 455 ---------------EEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD 519 (975)
T ss_pred ---------------hhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC
Confidence 0000000000111111111 11234445577888999988844333222 111111
Q ss_pred chhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHhhhcchhh--------hHHHHHH
Q 000167 636 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKT--------RAHAMKC 705 (1972)
Q Consensus 636 ~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~LveKlgd~K~--------r~~a~~~ 705 (1972)
....+-++.++ +|.--.-.....+++..++...+ .|.++....++..++..+...-+ -....-.
T Consensus 520 ~~v~~kil~~~------~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vs 593 (975)
T COG5181 520 PRVSRKILEYY------SDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVS 593 (975)
T ss_pred hHHHHHHHhhc------cCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeee
Confidence 11122233332 22211111222223333333333 24444444444444443332110 0011111
Q ss_pred HHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHH---HhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHH
Q 000167 706 LTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE---DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782 (1972)
Q Consensus 706 L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~---~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~l 782 (1972)
|...+..+ ...+++.++..+ .+|.|.||..++..++.+.. ..|-.. .+..+--.+-.. ++...|+|--.-+++
T Consensus 594 l~~r~kp~-l~~ivStiL~~L-~~k~p~vR~~aadl~~sl~~vlk~c~e~~-~l~klg~iLyE~-lge~ypEvLgsil~A 669 (975)
T COG5181 594 LEFRGKPH-LSMIVSTILKLL-RSKPPDVRIRAADLMGSLAKVLKACGETK-ELAKLGNILYEN-LGEDYPEVLGSILKA 669 (975)
T ss_pred hhhccCcc-hHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHhcchHH-HHHHHhHHHHHh-cCcccHHHHHHHHHH
Confidence 11111111 224566666665 89999999988887666554 333211 111222234454 888999999999999
Q ss_pred HHHHHHhhC-----hhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHH
Q 000167 783 LGALHKFVG-----PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPT 857 (1972)
Q Consensus 783 l~~Ly~~~G-----~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ 857 (1972)
++.+|..+| |.+...|..+.|.+.+ .-+|+...+ ...+-. . ...+.+.++.-+-. .|.=+
T Consensus 670 i~~I~sv~~~~~mqpPi~~ilP~ltPILrn----kh~Kv~~nt----i~lvg~---I---~~~~peyi~~rEWM-RIcfe 734 (975)
T COG5181 670 ICSIYSVHRFRSMQPPISGILPSLTPILRN----KHQKVVANT----IALVGT---I---CMNSPEYIGVREWM-RICFE 734 (975)
T ss_pred HHHHhhhhcccccCCchhhccccccHhhhh----hhHHHhhhH----HHHHHH---H---HhcCcccCCHHHHH-HHHHH
Confidence 999988776 3455555555555443 333332100 000000 0 00000011110000 13446
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhH
Q 000167 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1972)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~l 937 (1972)
|++.+.+.|=.+|..|.+.+.-|- +.|.| .+++.+|..-|+-.....+.-+--.|+-+++..| +| .+
T Consensus 735 Lvd~Lks~nKeiRR~A~~tfG~Is----~aiGP---qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg----pf--sV 801 (975)
T COG5181 735 LVDSLKSWNKEIRRNATETFGCIS----RAIGP---QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG----PF--SV 801 (975)
T ss_pred HHHHHHHhhHHHHHhhhhhhhhHH----hhcCH---HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC----ch--hh
Confidence 777777777788999999887664 34555 6788888776643333222222222333333333 22 67
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC---
Q 000167 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP--- 1008 (1972)
Q Consensus 938 lp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~--- 1008 (1972)
+|.++.-..-...+|++-...++.-|++.+| +-.+.|.|.++|.+. ++.-|+.+.+.+.-..-+.+...
T Consensus 802 lP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr--D~vhRqta~nvI~Hl~Lnc~gtg~ed 879 (975)
T COG5181 802 LPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR--DPVHRQTAMNVIRHLVLNCPGTGDED 879 (975)
T ss_pred HHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc--chHHHHHHHHHHHHHhcCCCCcccHH
Confidence 9999999998999999999999999999987 345788889999876 57778888777764444443321
Q ss_pred ChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000167 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1972)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1972)
...+++.-+...+-|..+-|-.+..+++..|..++|...|++++
T Consensus 880 a~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv 923 (975)
T COG5181 880 AAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV 923 (975)
T ss_pred HHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 12344445777889999999999999999999999999999987
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=5.7e-07 Score=109.55 Aligned_cols=404 Identities=14% Similarity=0.184 Sum_probs=275.1
Q ss_pred HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHH
Q 000167 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (1972)
Q Consensus 717 ~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~ 795 (1972)
.++++++.-.....+...+.+.|..+..+.-..|.+... +..+++-+..+ +.+++..||.-|-+.+-.+.+....++.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 345555543333333333458888888887777775322 44556556664 9999999999998877777666665665
Q ss_pred hhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHH
Q 000167 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1972)
Q Consensus 796 ~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1972)
.|++.+-.++. |+...+- ..+|. +. +++..
T Consensus 121 ~~Fn~iFdvL~--------klsaDsd----~~V~~----------~a--------------eLLdR-------------- 150 (675)
T KOG0212|consen 121 VYFNEIFDVLC--------KLSADSD----QNVRG----------GA--------------ELLDR-------------- 150 (675)
T ss_pred cchHHHHHHHH--------HHhcCCc----ccccc----------HH--------------HHHHH--------------
Confidence 56544332222 2211000 00000 00 11110
Q ss_pred HHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHH
Q 000167 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1972)
Q Consensus 876 ~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~A 955 (1972)
.+..++.+. .-+-+ ..++++.|+.|+.+.|...++--+.+|..+-..-+-+|-.|+..+++++++.|+|+...||+-
T Consensus 151 LikdIVte~--~~tFs-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~ 227 (675)
T KOG0212|consen 151 LIKDIVTES--ASTFS-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTL 227 (675)
T ss_pred HHHHhcccc--ccccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHH
Confidence 122233221 00222 489999999999999999999999999988877788889999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCCH
Q 000167 956 TLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSS 1026 (1972)
Q Consensus 956 a~~aL~~i~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~ 1026 (1972)
+..+|..+...+. .+.+++.+..-+.++ ++..+.-++.|+.+++.-.+.. .....++..+..|+.|...
T Consensus 228 ~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~ 305 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEE 305 (675)
T ss_pred HHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcc
Confidence 9999999987752 456677777777765 6899999999999988765542 2334455568889988777
Q ss_pred -HHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000167 1027 -DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISS 1105 (1972)
Q Consensus 1027 -dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 1105 (1972)
.++..|+..-..++..++.+....-
T Consensus 306 ~~i~~~a~~~n~~l~~l~s~~~~~~~------------------------------------------------------ 331 (675)
T KOG0212|consen 306 MSIKEYAQMVNGLLLKLVSSERLKEE------------------------------------------------------ 331 (675)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccc------------------------------------------------------
Confidence 5888887655555554443211100
Q ss_pred CCCCCCCCCCCcccccchhhhhhhhccccCCCChHHhhhhhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHH
Q 000167 1106 RVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFK 1185 (1972)
Q Consensus 1106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k 1185 (1972)
.+ |. .-+| -+...+++..-.
T Consensus 332 --------------------id------------------------~~----~ii~------------vl~~~l~~~~~~ 351 (675)
T KOG0212|consen 332 --------------------ID------------------------YG----SIIE------------VLTKYLSDDREE 351 (675)
T ss_pred --------------------cc------------------------hH----HHHH------------HHHHHhhcchHH
Confidence 00 00 0111 133344555556
Q ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh
Q 000167 1186 KQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265 (1972)
Q Consensus 1186 ~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~ 1265 (1972)
.|+++++=+.-.....+..++.+.|-+|--+...+.|+.-.|+.+.|+.+..+..--..-+ -..|+-.|++..
T Consensus 352 tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~-------~~~fl~sLL~~f 424 (675)
T KOG0212|consen 352 TRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN-------LRKFLLSLLEMF 424 (675)
T ss_pred HHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc-------HHHHHHHHHHHH
Confidence 7888888888888888888888899899888889999999999999999998654333322 267888888888
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCccccHHHHH
Q 000167 1266 GHNIEKVREKMRELTKQIVNFYSATKTLPYIL 1297 (1972)
Q Consensus 1266 Gd~k~~vr~~v~~il~~~~~v~~~skvf~~l~ 1297 (1972)
-.-+--++.+--=|++++|...-+.+||..+.
T Consensus 425 ~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 425 KEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred hhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 77666677777778999999999999998753
No 27
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=4.6e-06 Score=109.75 Aligned_cols=561 Identities=18% Similarity=0.136 Sum_probs=319.2
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 000167 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (1972)
+...+-..|..+...+..+.-..+.... -..+++.+...+ |.+.-|...+..=++.+....+ -..|...++|.+..
T Consensus 91 ~~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~ 166 (759)
T KOG0211|consen 91 LSNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLEL 166 (759)
T ss_pred cCchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHh
Confidence 3445666677777766655421111111 457788888887 7776665555444444443322 23566778888887
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhc---CCh-HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN---KVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~---Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
.+-+....||+++.+++..+... ++-....+.+...+.. .-| +.|.-++..+..+....+...+ -..+.|.
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~ 241 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPI 241 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHH
Confidence 78888889999999999998864 3333333444433331 122 3455566666666655543222 2667788
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 000167 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 529 (1972)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~ 529 (1972)
......|..+.||.++.+-++.+.++++..... ..+.+..
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~------------------------------------- 281 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTL------------------------------------- 281 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHH-------------------------------------
Confidence 889999999999999999999999888862111 0011100
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHh
Q 000167 530 ESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQ 609 (1972)
Q Consensus 530 ~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~ 609 (1972)
+..
T Consensus 282 -----------------------------------------------------------------------------~~L 284 (759)
T KOG0211|consen 282 -----------------------------------------------------------------------------IQL 284 (759)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred hhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 000167 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 689 (1972)
Q Consensus 610 L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 689 (1972)
+.+..=-.|+.|++.+.++...+...++....+...+.. -..|.+..|.-..-+....+....+. . ..-....+..
T Consensus 285 ~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~-~~~~~~~~~~ 360 (759)
T KOG0211|consen 285 LRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-S-ATRTQLVPPV 360 (759)
T ss_pred hhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-c-cCcccchhhH
Confidence 111112235555555555444432221111111111100 11333333333333333222222221 0 0011223444
Q ss_pred Hhhhcchh--hhHHHHHHHHHHHhhcC----hhHHHHHHHHhh---hhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHH
Q 000167 690 SERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (1972)
Q Consensus 690 veKlgd~K--~r~~a~~~L~~l~e~~~----~~~vl~~l~~~l---~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li 760 (1972)
..-++|.. .|.++..-...++...+ ++...+.+++.+ ..+.|+.|+......+......+|.. -.+..++
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~ti~~ll 439 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE-RTISELL 439 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC-cCccccC
Confidence 44455543 23333333334444333 333333333222 24566667766665555554445432 1233444
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCC
Q 000167 761 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840 (1972)
Q Consensus 761 ~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~ 840 (1972)
+..... +.+-.+.||..-+..+..+ +.+... -
T Consensus 440 p~~~~~-l~de~~~V~lnli~~ls~~---------------------------~~v~~v------~-------------- 471 (759)
T KOG0211|consen 440 PLLIGN-LKDEDPIVRLNLIDKLSLL---------------------------EEVNDV------I-------------- 471 (759)
T ss_pred hhhhhh-cchhhHHHHHhhHHHHHHH---------------------------HhccCc------c--------------
Confidence 444444 5666666665444322111 111100 0
Q ss_pred CCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHH
Q 000167 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 920 (1972)
Q Consensus 841 ~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~ 920 (1972)
|.+ -++..+.+.+.+...|.+|+.|.+.++.+-.++..-...+.. ..+...+...+.|--..++..|...+.
T Consensus 472 g~~-----~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 472 GIS-----TVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD---EKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred cch-----hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 000 011112334555556679999999999999888643111111 223344455677777778899999999
Q ss_pred HHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhHHHHHHHH
Q 000167 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDW 996 (1972)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~~~~~~~R~~~l~~ 996 (1972)
.++...|..+ +...++|.++...++.+-.+|.+...++..++..+|- +.++|.+.....+. +|.+|..++..
T Consensus 544 ~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~ 619 (759)
T KOG0211|consen 544 ALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKH 619 (759)
T ss_pred HHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHH
Confidence 9999999554 4568899999999998888999999999999999984 45677666666666 68999999999
Q ss_pred HHHHhccCCCCCChhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcChh
Q 000167 997 LSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQE 1046 (1972)
Q Consensus 997 L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~l~~l~~~~G~~ 1046 (1972)
|...+..... +.....+.|+..+| .|.+.+||-.|..++..+..+.-+.
T Consensus 620 L~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 620 LPKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLES 669 (759)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhh
Confidence 9877665443 23456777766655 7999999999999999887665443
No 28
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=0.0017 Score=86.66 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHH--HH---cChhh-HhhhhhHHHHHH
Q 000167 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA--SA---MGPAV-EKSSKGVLSDIL 942 (1972)
Q Consensus 869 ~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La--~a---lg~~~-~~~~~~llp~ll 942 (1972)
.|...+..+..|+...+.....-.+..+..++.-. +|-|...++.|..+|-.|+ .. .|.+= ...+..+++.|.
T Consensus 713 ~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Is 791 (1176)
T KOG1248|consen 713 AQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIIS 791 (1176)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 45566666666665432111111112333333333 8888888889988888887 21 12211 225566666666
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCChhh
Q 000167 943 KCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAH 1012 (1972)
Q Consensus 943 ~~L~D~k~~Vr~Aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~~~~~ 1012 (1972)
..+......++.+-+-++..++...+ +..++..+...|.+. +++++..+++++..++...+. .++...
T Consensus 792 agl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~ 869 (1176)
T KOG1248|consen 792 AGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEE 869 (1176)
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHH
Confidence 66666666666665777877776532 456677777778765 699999999999998888776 234444
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000167 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (1972)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~ 1070 (1972)
++.-++..+.|.+..+|.+....|..+++.+|.+.+..+++ .....+...|.+.
T Consensus 870 LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p----ee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 870 LLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP----EEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH----HHHHHHHHHHHHH
Confidence 55558888899999999999999999999999999998875 4445555555543
No 29
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=8.1e-05 Score=100.14 Aligned_cols=286 Identities=15% Similarity=0.179 Sum_probs=188.7
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC---CccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCch
Q 000167 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 203 (1972)
Q Consensus 127 ~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~---~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~ 203 (1972)
..+.+.|..+..+-||..+.+...||-..++.-|. .+...+.|......+|++.|.=+.+.|..-++-+|.--+.
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~-- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS-- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--
Confidence 34556667788899999999999999999998884 2345678999999999999999888887777777754332
Q ss_pred hhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhh-ccccCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 000167 204 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQE-LISEDVGPGPSEESTADVPPEIDEYELVDPVDIL 282 (1972)
Q Consensus 204 l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl 282 (1972)
.++..+.+.|-..+-. |..+- .+..+ +.+ .+...-|..| ....+.-|
T Consensus 895 -------~~k~~LV~sL~~tl~~--Gkr~~------~~vs~-eTelFq~G~Lg~Tp-------~Gg~isTY--------- 942 (1702)
T KOG0915|consen 895 -------SLKKSLVDSLVNTLTG--GKRKA------IKVSE-ETELFQEGTLGKTP-------DGGKISTY--------- 942 (1702)
T ss_pred -------hhHHHHHHHHHHHHhc--ccccc------ceecc-chhcccCCcCCCCC-------CCCcchHH---------
Confidence 2333333444333321 21110 00000 000 0000000000 01112111
Q ss_pred ccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchh
Q 000167 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS 361 (1972)
Q Consensus 283 ~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (1972)
++|..|++. +.. .+++-.+...-+ .+-=+-...|+.-++.|+..-+...+
T Consensus 943 ------------------------KELc~LASd--l~q---PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~ 993 (1702)
T KOG0915|consen 943 ------------------------KELCNLASD--LGQ---PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLE 993 (1702)
T ss_pred ------------------------HHHHHHHhh--cCC---hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhh
Confidence 334444431 100 122222222222 11111245566667777777788899
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000167 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1972)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1972)
||.+.++|-|..-=-|..+.|++|....-++++.-. .-.+.+|+++++.+|.+|-|+||+.+|..|..+++..+..
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH
Confidence 999999999998888999999988877777776420 1225678999999999999999999999999999998887
Q ss_pred HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000167 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
.+.+.++.+-.++...++|-...||+||-.+...+.++
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999998877655544
No 30
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.2e-08 Score=116.83 Aligned_cols=183 Identities=18% Similarity=0.227 Sum_probs=159.4
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
-+..+.+.+|....++|..|+.|.. ++......+.+++-.+.+-++..|+.|...||.|++.|+..+.+.+......++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999874 666666778888888889999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHH
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYV 447 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~ 447 (1972)
-.|+.+-.+.|..||+++..||.+++.+ .++..+++.|..+++|.||.+|...+..+.+|+.+.+- .....+....+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 88899999999999999999999887777777766542 22334567788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
+.+..-+.|.-|++|++|.-.+.....
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~~ 277 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELKE 277 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHHH
Confidence 999999999999999999876654443
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.66 E-value=3e-06 Score=117.75 Aligned_cols=268 Identities=19% Similarity=0.154 Sum_probs=157.2
Q ss_pred HHHHhhhcc--hhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 000167 687 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (1972)
Q Consensus 687 ~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~ 764 (1972)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ ++.++.||..++..|..+.+.... .+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------APALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------hHHHH
Confidence 344444544 357777766666543 333555566554 777888888888777666432211 12233
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHhhCh--hHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCC
Q 000167 765 DTGLQSSAAATRNATIKLLGALHKFVGP--DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1972)
Q Consensus 765 ~~gL~~sn~~VR~aA~~ll~~Ly~~~G~--~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~ 842 (1972)
.. |++.++.||.+|+..|+.+.. +. .+...|.+-.|.+....-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~-------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSV-------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcc--------------------------
Confidence 44 677888888888888777641 11 111122222222211111111110
Q ss_pred CCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHH
Q 000167 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (1972)
Q Consensus 843 d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~L 922 (1972)
.. .+.++..+.|.++.+|..+.+.|..+-.. . ......|...++|.+..|+..|+..|+.+
T Consensus 742 ---~~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 742 ---DD-------VESVAGAATDENREVRIAVAKGLATLGAG--------G-APAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ---cC-------cHHHHHHhcCCCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 00 12355667788888888888877655321 0 22345566777888888888887777655
Q ss_pred HHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000167 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1972)
Q Consensus 923 a~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1972)
. .. ..+.+.++..|.|....||.+|..+|..+ +-...++.|...|.++ ++.+|.++..-|...
T Consensus 803 g----~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~-- 865 (897)
T PRK13800 803 G----CP-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW-- 865 (897)
T ss_pred C----Cc-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc--
Confidence 1 11 22335577778888888888887777643 3345567777788766 578888888777652
Q ss_pred cCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHH
Q 000167 1003 GLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1972)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1972)
. ........+...++|.+.+||.+|..+|.
T Consensus 866 --~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 --P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred --C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11223444667788888888888887774
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.65 E-value=3.8e-05 Score=101.61 Aligned_cols=459 Identities=16% Similarity=0.154 Sum_probs=296.4
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 000167 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (1972)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 371 (1972)
..+.+++-..|+=+.-.+..+.... ++-.--++..|.+=+.+.|..++..|+++++.++. ...++.++|.+
T Consensus 49 ~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v 119 (526)
T PF01602_consen 49 KLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDV 119 (526)
T ss_dssp CTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHH
Confidence 3456788888887666666655311 11123366788888889999999999999999872 34567899999
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000167 372 LEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1972)
Q Consensus 372 L~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (1972)
.+.+.++++.||..|..|+..++......+.. +++.+...+.+++|.++..++..+..+ .+++......++.+...+
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L 197 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRIL 197 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHh
Confidence 99999999999999999999999862234455 789999999999999999999999887 444443335567778888
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHhCchhH-HHhHhhccHH----HHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCC
Q 000167 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDV----RRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (1972)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~-~~~l~~Ld~~----~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~ 525 (1972)
.+.+.+.+|-++-...+++..+...-.+..- ..+++.+.+. ...-+.+++.-
T Consensus 198 ~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~----------------------- 254 (526)
T PF01602_consen 198 CQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRL----------------------- 254 (526)
T ss_dssp HHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred hhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHH-----------------------
Confidence 8888999999887777777644432211110 1222222211 11111111100
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHH
Q 000167 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPAD 605 (1972)
Q Consensus 526 ~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~ 605 (1972)
...- ..+.+ ... .+-..
T Consensus 255 ----------------i~~l------------------------------------------~~~~~-~~~----~~~~~ 271 (526)
T PF01602_consen 255 ----------------IIKL------------------------------------------SPSPE-LLQ----KAINP 271 (526)
T ss_dssp ----------------HHHH------------------------------------------SSSHH-HHH----HHHHH
T ss_pred ----------------HHHh------------------------------------------hcchH-HHH----hhHHH
Confidence 0000 00001 111 12245
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000167 606 TVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1972)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~e~L~~~v~~~-~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~ 684 (1972)
+...|.++++..|.-+++.|..+.... .... .....+..+. .+.+..|...+++++..++.. ..+..
T Consensus 272 L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~~~ 339 (526)
T PF01602_consen 272 LIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNVKE 339 (526)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHHHH
T ss_pred HHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cchhh
Confidence 778889999999999999998887664 2111 2233333332 366677899999999888864 46777
Q ss_pred HHHHHHhhhc---chhhhHHHHHHHHHHHhhcCh--hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhH
Q 000167 685 CLLGISERVA---DIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1972)
Q Consensus 685 il~~LveKlg---d~K~r~~a~~~L~~l~e~~~~--~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~l 759 (1972)
++..|..-+. |...+..+...+..+++.+.+ ++.+..+++.+ ...+..+..+++..+..++...... -..+
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~~~ 415 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---REKI 415 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HHHH
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hHHH
Confidence 8888887774 456888888999999997754 56788888875 5567788899999999998764321 1233
Q ss_pred HHHHHhcCCC-CCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCC
Q 000167 760 IDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1972)
Q Consensus 760 i~~l~~~gL~-~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~ 838 (1972)
+..+.+. +. -.++.++.++..++|+....... .+ ..+.++..+-+
T Consensus 416 l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~-----~~-~~~~~~~~l~~--------------------------- 461 (526)
T PF01602_consen 416 LKKLIEL-LEDISSPEALAAAIWILGEYGELIEN-----TE-SAPDILRSLIE--------------------------- 461 (526)
T ss_dssp HHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT-----TT-HHHHHHHHHHH---------------------------
T ss_pred HHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc-----cc-cHHHHHHHHHH---------------------------
Confidence 4444333 33 46788999999999987655543 00 11222222222
Q ss_pred CCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCC-ChhhHHHHHHhccc--cchHHHHHHH
Q 000167 839 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLRGRLY--DSNKNLVMAT 915 (1972)
Q Consensus 839 ~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~-~~~eL~~~L~~~L~--DsN~~V~~~A 915 (1972)
.+.+..-.+|...+..+.++... .... ...++...+..... +.|..|+..|
T Consensus 462 ----------------------~~~~~~~~vk~~ilt~~~Kl~~~----~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra 515 (526)
T PF01602_consen 462 ----------------------NFIEESPEVKLQILTALAKLFKR----NPENEVQNEILQFLLSLATEDSSDPEVRDRA 515 (526)
T ss_dssp ----------------------HHTTSHHHHHHHHHHHHHHHHHH----SCSTTHHHHHHHHHHCHHHHS-SSHHHHHHH
T ss_pred ----------------------hhccccHHHHHHHHHHHHHHHhh----CCchhhHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 22233335677777778777653 2221 22477777777776 7799999999
Q ss_pred HHHHHHHH
Q 000167 916 LITLGAVA 923 (1972)
Q Consensus 916 l~~l~~La 923 (1972)
...+..+-
T Consensus 516 ~~y~~ll~ 523 (526)
T PF01602_consen 516 REYLRLLN 523 (526)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88877653
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.64 E-value=6.9e-05 Score=99.17 Aligned_cols=497 Identities=15% Similarity=0.154 Sum_probs=288.2
Q ss_pred hHhhhcCC--cHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhh---hHHH
Q 000167 57 FKKTVADS--NAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVD---VFLD 131 (1972)
Q Consensus 57 ~~k~v~Ds--N~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~~---~v~~ 131 (1972)
++++.... |..-+..++.-+..+.-. |.+.... .+.++.-+-+.+...|..+--.+..|.+. +++ -++.
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~-G~~~~~~----~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~~~~~l~~n 82 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMML-GYDISFL----FMEVIKLISSKDLELKRLGYLYLSLYLHE-DPELLILIIN 82 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHT-T---GST----HHHHHCTCSSSSHHHHHHHHHHHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCCCchH----HHHHHHHhCCCCHHHHHHHHHHHHHHhhc-chhHHHHHHH
Confidence 44555555 777777777766654433 3333322 33333332235777777776555555543 333 3467
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhh
Q 000167 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 211 (1972)
Q Consensus 132 ~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~ 211 (1972)
.|.+-+.|.||-++..++.+|..+. .. --...+++.+.+++.|+++.||..|..++..+|+...+ .+...+.
T Consensus 83 ~l~kdl~~~n~~~~~lAL~~l~~i~----~~-~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~-- 154 (526)
T PF01602_consen 83 SLQKDLNSPNPYIRGLALRTLSNIR----TP-EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDELI-- 154 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH-----SH-HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHH--
T ss_pred HHHHhhcCCCHHHHHHHHhhhhhhc----cc-chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHH--
Confidence 7888899999999999999998754 21 11357899999999999999999999999999988544 2211110
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchh
Q 000167 212 MRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFW 291 (1972)
Q Consensus 212 Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~ 291 (1972)
+.+.
T Consensus 155 ----------------------------------------------------------------------------~~l~ 158 (526)
T PF01602_consen 155 ----------------------------------------------------------------------------PKLK 158 (526)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHh
Confidence 0122
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHH
Q 000167 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLP 369 (1972)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp 369 (1972)
..+.+.++..+..|+..+..+-..++....-...+++.|.+.+.+.+.-+....++++..++..-. ... ..+++
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~----~~~~~~~~i~ 234 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP----EDADKNRIIE 234 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH----HHHHHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh----hhhhHHHHHH
Confidence 224555566677777777776111111112245667777777788888777777777765543221 122 56788
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
.++..+....+.|+=.+..++-.+... ...+..+++.+...+.++++.+|.-++..|..+....++. + ......
T Consensus 235 ~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~-v----~~~~~~ 308 (526)
T PF01602_consen 235 PLLNLLQSSSPSVVYEAIRLIIKLSPS-PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA-V----FNQSLI 308 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH-H----GTHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhcc-hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh-h----hhhhhh
Confidence 888888877777765555555444322 0113456777778888888999999888888776655222 2 222222
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 000167 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 529 (1972)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~ 529 (1972)
+..+..|.+..||..+.+.+..++. ++.+...+..| .+++..
T Consensus 309 ~~~l~~~~d~~Ir~~~l~lL~~l~~---~~n~~~Il~eL--------~~~l~~--------------------------- 350 (526)
T PF01602_consen 309 LFFLLYDDDPSIRKKALDLLYKLAN---ESNVKEILDEL--------LKYLSE--------------------------- 350 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-----HHHHHHHHHHH--------HHHHHH---------------------------
T ss_pred hheecCCCChhHHHHHHHHHhhccc---ccchhhHHHHH--------HHHHHh---------------------------
Confidence 3333448889998888777765543 33343333332 111100
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHh
Q 000167 530 ESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQ 609 (1972)
Q Consensus 530 ~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~ 609 (1972)
T Consensus 351 -------------------------------------------------------------------------------- 350 (526)
T PF01602_consen 351 -------------------------------------------------------------------------------- 350 (526)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCChHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 000167 610 LKSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (1972)
Q Consensus 610 L~s~~Wk~Rl~a~e~L~~~v~~~~~-~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~ 688 (1972)
..+-..|.+++..+..+...... .....+.++.++.. ++..+....+..+..++.+.+..... ++..
T Consensus 351 --~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~------~~~~~~~~~~~~i~~ll~~~~~~~~~----~l~~ 418 (526)
T PF01602_consen 351 --LSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI------SGDYVSNEIINVIRDLLSNNPELREK----ILKK 418 (526)
T ss_dssp --C--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC------TGGGCHCHHHHHHHHHHHHSTTTHHH----HHHH
T ss_pred --ccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh------ccccccchHHHHHHHHhhcChhhhHH----HHHH
Confidence 00111344444555544444222 12234556666542 22233445555555666655443222 3344
Q ss_pred HHhh---hcchhhhHHHHHHHHHHHhhcCh----hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHH
Q 000167 689 ISER---VADIKTRAHAMKCLTTFSEAVGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1972)
Q Consensus 689 LveK---lgd~K~r~~a~~~L~~l~e~~~~----~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~ 761 (1972)
+++. +.++..+..+.-++..+++.... ..++..+.... ..-++.++...+..+.++...++.... .+.++.
T Consensus 419 L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~-~~~~~~vk~~ilt~~~Kl~~~~~~~~~-~~~i~~ 496 (526)
T PF01602_consen 419 LIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENF-IEESPEVKLQILTALAKLFKRNPENEV-QNEILQ 496 (526)
T ss_dssp HHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHHHSCSTTH-HHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHhhCCchhh-HHHHHH
Confidence 4443 33445555555566666555443 23344444442 345788999999999999887664321 246777
Q ss_pred HHHhcCCC--CCchhHHHHHHHHHHHH
Q 000167 762 FCKDTGLQ--SSAAATRNATIKLLGAL 786 (1972)
Q Consensus 762 ~l~~~gL~--~sn~~VR~aA~~ll~~L 786 (1972)
++... .. +.|++||+-|...+.-|
T Consensus 497 ~~~~~-~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 497 FLLSL-ATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHCH-HHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHH-hccCCCCHHHHHHHHHHHHHH
Confidence 77765 55 88999999998876544
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.56 E-value=5.4e-06 Score=115.27 Aligned_cols=242 Identities=20% Similarity=0.189 Sum_probs=168.6
Q ss_pred HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhC--hhHH
Q 000167 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (1972)
Q Consensus 718 vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G--~~l~ 795 (1972)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 455666665 799999999999998764 32 2466677777 999999999999999887743222 1233
Q ss_pred hhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHH
Q 000167 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1972)
Q Consensus 796 ~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1972)
..|.+-.|.+....-..+..+.. . -+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~-----------------------------~-----~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA-----------------------------G-----DAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc-----------------------------C-----CHHHHHHHhcCCCHHHHHHHHH
Confidence 33333233222222222221100 0 0134667899999999999999
Q ss_pred HHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHH
Q 000167 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1972)
Q Consensus 876 ~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~A 955 (1972)
.|..+- . ...|...+.|.+..|+..++..|+.+...- ...++.++..++|..+.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHH
Confidence 987541 1 134566789999999999999888764321 122677888999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHH
Q 000167 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1972)
Q Consensus 956 a~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~ 1035 (1972)
|..+|..+.. ...+.+.+..+|.++ +|.+|..++..|... + ....+.+|..+|.|.+.+||.+|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~----~~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----A----ADVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----c----ccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999877622 233456688888876 699999999888642 1 12345678999999999999999999
Q ss_pred HHHH
Q 000167 1036 IVEI 1039 (1972)
Q Consensus 1036 l~~l 1039 (1972)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
No 35
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.54 E-value=0.0017 Score=79.83 Aligned_cols=147 Identities=17% Similarity=0.190 Sum_probs=108.2
Q ss_pred HHhcccCHHHHHHHHHHHHHHHH-----Hhh-----------hchhh-hhhhHHHHHHHHhccC-------cHHHHHHHH
Q 000167 332 KLITDVNIAVAVEAIQAIGNLAR-----GLR-----------THFSG-SSRFLLPVLLEKLKEK-------KPTVAESLT 387 (1972)
Q Consensus 332 k~l~D~N~~V~~~A~~~l~~La~-----~L~-----------~~f~~-~~~~llp~LL~klkdk-------k~~V~~aa~ 387 (1972)
..++..|-.|...|...-..++. .+- ..|.. .+..++|.||..+-.. .=++.-++.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 34557888887777665544443 111 12332 2456899999887432 224667888
Q ss_pred HHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHH
Q 000167 388 QTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (1972)
Q Consensus 388 ~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 466 (1972)
.||.-+... +-.-+..++..+-..+.+.+|.-|..+.-.+..++..-....+.+++++.+|.+...++|+.--|.+.+.
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 898877765 2122345667777788899999999998888888877667778889999999999999999999999999
Q ss_pred HHHHHHHHHhCc
Q 000167 467 SVLAAIAKSVGM 478 (1972)
Q Consensus 467 ~~l~~l~~~~ge 478 (1972)
.|++.+..++.+
T Consensus 430 wc~g~iad~va~ 441 (858)
T COG5215 430 WCFGAIADHVAM 441 (858)
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
No 36
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=4.4e-05 Score=100.71 Aligned_cols=293 Identities=14% Similarity=0.165 Sum_probs=193.4
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHhccc---cchhHHHH---HHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCch
Q 000167 606 TVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEIL---VRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1972)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~---~~~~~~~l---v~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (1972)
....+.+..|.-|.+........-...+. .....+.+ ++.+ ..|+|..|.......+..+....+ ..
T Consensus 360 ~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l-----v~d~~~~vr~a~a~~~~~~~p~~~--k~ 432 (759)
T KOG0211|consen 360 VSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL-----VLDNALHVRSALASVITGLSPILP--KE 432 (759)
T ss_pred HHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH-----HhcccchHHHHHhccccccCccCC--cC
Confidence 44566777788888777666654433221 00011111 2222 257788887766555544333222 13
Q ss_pred hhHHHHHHHHHhhhcc--hhhhHHHHHHH---HHHHhhcChhHHHHHHHHhhh---hCCChHHHHHHHHHHHHHHHHhCC
Q 000167 680 KCVVLCLLGISERVAD--IKTRAHAMKCL---TTFSEAVGPGFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGV 751 (1972)
Q Consensus 680 ~~~~~il~~LveKlgd--~K~r~~a~~~L---~~l~e~~~~~~vl~~l~~~l~---~~KnpKv~~e~l~~L~~~i~~fG~ 751 (1972)
+.+...+|..+..+-| +.++....+.+ ...-+..|...+.+.+++.+. ...+|+++.+.+.++..+..++|.
T Consensus 433 ~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~ 512 (759)
T KOG0211|consen 433 RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGV 512 (759)
T ss_pred cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhh
Confidence 4556666776666655 34565555333 333344566666666666542 345899999999999999999996
Q ss_pred CCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 000167 752 SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1972)
Q Consensus 752 ~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~ 831 (1972)
..++-+ +-+.+... +.+.--.+|.+|...+..+-...|..-..
T Consensus 513 ~~~~~~-~~~l~~~~-l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~----------------------------------- 555 (759)
T KOG0211|consen 513 EFFDEK-LAELLRTW-LPDHVYSIREAAARNLPALVETFGSEWAR----------------------------------- 555 (759)
T ss_pred HHhhHH-HHHHHHhh-hhhhHHHHHHHHHHHhHHHHHHhCcchhH-----------------------------------
Confidence 444432 55666665 77778899999999998887777721100
Q ss_pred cccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHH
Q 000167 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNL 911 (1972)
Q Consensus 832 ~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V 911 (1972)
..+.+.++....+.+|..|..-+..+..++.-.+..+.. .+|+..+.....|...+|
T Consensus 556 --------------------~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~---~~Llp~~~~l~~D~vanV 612 (759)
T KOG0211|consen 556 --------------------LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITC---EDLLPVFLDLVKDPVANV 612 (759)
T ss_pred --------------------HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHH---HHHhHHHHHhccCCchhh
Confidence 013345666667779999999999998776543333333 678888888899999999
Q ss_pred HHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000167 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1972)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~ 967 (1972)
+..+++.+..+.+.+-.... -+.+.|.+.....|+...||-.|..+...+....
T Consensus 613 R~nvak~L~~i~~~L~~~~~--~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 613 RINVAKHLPKILKLLDESVR--DEEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred hhhHHHHHHHHHhhcchHHH--HHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 99999999999888865432 2456666666667999999999999998887653
No 37
>PRK09687 putative lyase; Provisional
Probab=98.47 E-value=1.8e-05 Score=94.88 Aligned_cols=147 Identities=12% Similarity=0.061 Sum_probs=106.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
..+...+.|++|.+|..++..|..+ . . .+.+..|...|+|.+..|+..|+..|+.+. ....
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg~~--------~--~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--------~~~~ 191 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALSVI--------N--D-EAAIPLLINLLKDPNGDVRNWAAFALNSNK--------YDNP 191 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHhcc--------C--C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------CCCH
Confidence 3455667888999999988888533 1 1 567888888889999999998888887761 1134
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000167 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (1972)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (1972)
..++.++..|.|.+..||..|..+|.. ++-...+|.|...|++. + +|..++.-|.+ ++. ...++
T Consensus 192 ~~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~--~--~~~~a~~ALg~----ig~----~~a~p 255 (280)
T PRK09687 192 DIREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG--T--VGDLIIEAAGE----LGD----KTLLP 255 (280)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC--c--hHHHHHHHHHh----cCC----HhHHH
Confidence 677888889999999999998888866 35567888899998864 2 46665555543 221 23455
Q ss_pred HHHhhcC-CCCHHHHHHHHHHHH
Q 000167 1016 PASIAMT-DKSSDVRKAAEACIV 1037 (1972)
Q Consensus 1016 pl~~~L~-D~~~dVR~aA~~~l~ 1037 (1972)
.+...+. +.+..||..|.+++.
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHh
Confidence 5677774 778899988887764
No 38
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=1.4e-06 Score=100.22 Aligned_cols=180 Identities=18% Similarity=0.259 Sum_probs=145.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
..+..+++++|....+++..+..+..- ++......+.+++-++.+-+++.++.|...||.+++.|++.++..+.+.+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~f-h~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEF-HPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999988763 3444444568888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC----Chhh
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP----DAAH 1012 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~----~~~~ 1012 (1972)
++..++.+-.+.|.+||+.|..+|.+|+.+.....+++.|..++++. ++..|.....-...++...+..+ ...+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999976 57777665544444444443211 1223
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 1013 LLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
++..+-.-+.|+-+++|++|...+...
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhH
Confidence 334455667888888898888665444
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=98.43 E-value=0.0053 Score=82.53 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHH
Q 000167 383 AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVR 462 (1972)
Q Consensus 383 ~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR 462 (1972)
+++....+..+.. | .....++++++..+.+++..+|+-+..++..+....+.. .-..+..+.+-+.|++|-||
T Consensus 50 k~alKkvIa~mt~-G-~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-----alLaINtl~KDl~d~Np~IR 122 (746)
T PTZ00429 50 KAAVKRIIANMTM-G-RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-----ALLAVNTFLQDTTNSSPVVR 122 (746)
T ss_pred HHHHHHHHHHHHC-C-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-----HHHHHHHHHHHcCCCCHHHH
Confidence 4444444444433 2 566789999999999999999999988888765543321 23457888999999999999
Q ss_pred HHHHHHHHH
Q 000167 463 DAAFSVLAA 471 (1972)
Q Consensus 463 ~aA~~~l~~ 471 (1972)
.-|.++|+.
T Consensus 123 aLALRtLs~ 131 (746)
T PTZ00429 123 ALAVRTMMC 131 (746)
T ss_pred HHHHHHHHc
Confidence 999988754
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=98.35 E-value=0.00054 Score=91.74 Aligned_cols=144 Identities=13% Similarity=0.047 Sum_probs=94.3
Q ss_pred hhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000167 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1972)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~ 89 (1972)
|+--.|+..-+.|++=-.|..|.--+.+.|+..++- - .-..+.+.+.+++.|+|+.|+-.|+.+|....+..+... .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel-v-~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~ 215 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL-F-YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-E 215 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc-c-cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-H
Confidence 555567788899999999999999999999753321 0 112345667788999999999999999988876543211 1
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh--hhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 000167 90 YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL--EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQAL 156 (1972)
Q Consensus 90 ~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~--~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l 156 (1972)
.....+..|+...-...+-.+-..++++..|.-- +....+++.+.+.+.|.|+=|+.+|+.++..+.
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 1223334444432111233333444544433211 123467888889999999999999999887654
No 41
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.076 Score=71.77 Aligned_cols=191 Identities=12% Similarity=0.144 Sum_probs=139.4
Q ss_pred CHHHHHHHHHHHHHHHHHc-cccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHH
Q 000167 866 DWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1972)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a-~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (1972)
+-++++.+.+-|..++... ..........++++.|.+-+.++-.-+...+|.|+..|....+..+..++...+|-++-.
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 6778888888888887530 011112224678888888888888889999999999999999988889999999988888
Q ss_pred hCCCcHHHHHHHHHHHHHHHH--hc---C-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCC
Q 000167 945 LGDNKKHMRECTLTVLDAWLA--AV---H-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPD 1009 (1972)
Q Consensus 945 L~D~k~~Vr~Aa~~aL~~i~~--~~---~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~~ 1009 (1972)
+++.+..-|+.+.+||..|.. .. | +..+++.|..++.++ ....+...+-.+...+.+... ..-
T Consensus 747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~~~ 824 (1176)
T KOG1248|consen 747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDDET 824 (1176)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 899999999999999999883 21 2 344666666666544 233444423333333333332 223
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000167 1010 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1972)
Q Consensus 1010 ~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~ 1058 (1972)
+..++.-+..+|...+++||++|...+..++..+++.-+.+++..|=|.
T Consensus 825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 4556666888999999999999999999999999998777776555443
No 42
>PRK09687 putative lyase; Provisional
Probab=98.21 E-value=8.4e-05 Score=89.24 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=115.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~l 941 (1972)
+.|++|.+|..|+..|..+... ...+ ...++..|...+.|.+..|+..++..|+.+. -...++.+
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~---~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L 164 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKK---NPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLL 164 (280)
T ss_pred hcCCCHHHHHHHHHHHhccccc---cccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHH
Confidence 5889999999999999877432 1111 2456777888889999999999888876542 13578999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000167 942 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (1972)
Q Consensus 942 l~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (1972)
+..|.|....||..|..+|..+ ..+-...++.|...|.+. ++.+|.+++..|.+. .....+.+|+..|
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~--------~~~~av~~Li~~L 232 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALR--------KDKRVLSVLIKEL 232 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHcc--------CChhHHHHHHHHH
Confidence 9999999999999999999988 333456788899999876 789999999998752 1135677799999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 000167 1022 TDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 1022 ~D~~~dVR~aA~~~l~~l 1039 (1972)
+|.+ ||..|..+++.+
T Consensus 233 ~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 233 KKGT--VGDLIIEAAGEL 248 (280)
T ss_pred cCCc--hHHHHHHHHHhc
Confidence 9865 788777777665
No 43
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.21 Score=66.96 Aligned_cols=496 Identities=14% Similarity=0.111 Sum_probs=263.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc---CCC
Q 000167 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG---CLN 400 (1972)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~~---~~~ 400 (1972)
.++..|...++|....|+..|++-++.++..+... .+..++..+++.|..-. ......+.-+|..+...| ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 34555666677999999999999999999988843 46677778888665443 344455555555555442 234
Q ss_pred hHhHHHHHHHHhh-------c-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHHhcCCChHHHHHHHHHHHH
Q 000167 401 LVDVVEDVKTSVK-------N-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 471 (1972)
Q Consensus 401 l~~il~~l~~~l~-------~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~l~Ds~~~VR~aA~~~l~~ 471 (1972)
+++|+|.|..++. + .--.||-.++=++-.+.....+..+.+++..+.+.| ..++-|..-++|.||..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 6688888887773 2 335788888777766666666776767777666655 577899999999999988876
Q ss_pred HHHHhCchhH-HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 000167 472 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (1972)
Q Consensus 472 l~~~~ge~~~-~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~ 550 (1972)
.....|+-+. .+++...|-..-....-|...
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~------------------------------------------------ 529 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLD------------------------------------------------ 529 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHH------------------------------------------------
Confidence 5555554310 112222221100000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHH
Q 000167 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (1972)
Q Consensus 551 ~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~ 630 (1972)
+ ..+-.+.+.-...++.+.+..++.|=+-+.|..|...|.++..
T Consensus 530 ---------------------------------l---~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 530 ---------------------------------L---CVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred ---------------------------------H---hHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 0 0011122222233445555666888788889999998887543
Q ss_pred h-ccccchhHHHHHHHHh----cCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHH---HHHHHHhhhcchhhhHHH
Q 000167 631 A-VQNLDQSVEILVRLVC----MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL---CLLGISERVADIKTRAHA 702 (1972)
Q Consensus 631 ~-~~~~~~~~~~lv~~L~----~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~---il~~LveKlgd~K~r~~a 702 (1972)
. +.... -..+++++. ..+.+...-+.+....+..+..+......+...-+.. +++.+.++-.....++.-
T Consensus 574 ~~pk~~a--~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lm 651 (1133)
T KOG1943|consen 574 TEPKYLA--DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLM 651 (1133)
T ss_pred hhHHhhc--ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHH
Confidence 3 11110 112333332 1111112222222222222221111111122222222 456666665554433444
Q ss_pred HHHHHHHHhhcC-------hhHHHHHHHHhh---hhCCChHHHHHHHHHHHHHHHHhCCCC-CChhhHHHHHHhcCCCCC
Q 000167 703 MKCLTTFSEAVG-------PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSS 771 (1972)
Q Consensus 703 ~~~L~~l~e~~~-------~~~vl~~l~~~l---~~~KnpKv~~e~l~~L~~~i~~fG~~~-l~~k~li~~l~~~gL~~s 771 (1972)
..+...+.|.++ ++++.+..-..+ ..+.| .+|.++...+++++..|-... -...++|......+-..+
T Consensus 652 r~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~ 730 (1133)
T KOG1943|consen 652 RQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS 730 (1133)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch
Confidence 445555555443 234444322222 12334 677888888888888764321 111134443333213444
Q ss_pred chhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCccccc
Q 000167 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (1972)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs 851 (1972)
+-.+|..-+..++.+-..+ +.. ..++-+ .+
T Consensus 731 ~~~~r~g~~lal~~lp~~~---i~~-------~~q~~l----c~------------------------------------ 760 (1133)
T KOG1943|consen 731 EERIRRGLILALGVLPSEL---IHR-------HLQEKL----CK------------------------------------ 760 (1133)
T ss_pred HHHHHHHHHHHHccCcHHh---hch-------HHHHHH----HH------------------------------------
Confidence 6666765555444432111 111 011111 11
Q ss_pred ccccHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHccccCCCCChhhHHHHHHh----ccc----cchHHHHHHHHHHHHH
Q 000167 852 GKFTPTLVKSL-ESPDWKV-RLESIEAVNKILEEANKRIQPAGTGELFGGLRG----RLY----DSNKNLVMATLITLGA 921 (1972)
Q Consensus 852 ~~l~~~ll~~l-~d~~Wk~-R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~----~L~----DsN~~V~~~Al~~l~~ 921 (1972)
.++... +|. |.+ |...+..+..++..-.....+..+.+++..|.+ ... |...-|+..|+..+..
T Consensus 761 -----~~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~ 834 (1133)
T KOG1943|consen 761 -----LVLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSS 834 (1133)
T ss_pred -----HHhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHh
Confidence 111111 111 333 666666666666532112233334455544444 444 4445578899998888
Q ss_pred HHHHcC--hhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000167 922 VASAMG--PAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1972)
Q Consensus 922 La~alg--~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~ 966 (1972)
+...+. +-++.+ +..++..+++..-|+-...|+.|..|+..++.+
T Consensus 835 ~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 835 LLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred hhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 876553 335544 455666688888888888899999999998877
No 44
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.48 E-value=0.0059 Score=74.50 Aligned_cols=190 Identities=17% Similarity=0.119 Sum_probs=138.8
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh--hchhhh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~---ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~--~~f~~~ 363 (1972)
++.+.+.+++=+.|.++|+.|..++... .+....+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 5667778899999999999998876422 22235578899999999984444667789999999999887 555566
Q ss_pred hhhHHHHHHHHhccCc--HHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHh--h-c---------CChHHHHHH
Q 000167 364 SRFLLPVLLEKLKEKK--PTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSV--K-N---------KVPLVRSLT 423 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk--~~V~~aa~~aL~al~~~~~~~l~------~il~~l~~~l--~-~---------Knp~vR~~~ 423 (1972)
...+.|.|..-+.|.. ..+|.++..||-.+.-.++...+ +.++.|+... + + .++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 7778888888777764 34566666666654333233333 2344333211 1 1 236788888
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
+.--..++...+...+...+...+|.|..+|+..+.+||-+|-++++.++....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8777888888777667777888999999999999999999999999999988774
No 45
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.24 Score=64.28 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChH
Q 000167 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1972)
Q Consensus 381 ~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 460 (1972)
-.++|..-.+.-| .+ ......++|++......||+.||.-+--+|-+..+..+.-.+. =+..+.+.|.|+|+.
T Consensus 51 ~KleAmKRIia~i-A~-G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 51 LKLEAMKRIIALI-AK-GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQL 123 (968)
T ss_pred HHHHHHHHHHHHH-hc-CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHH
Confidence 3455554444444 44 2568899999999999999999999999999988765532221 145688999999999
Q ss_pred HHHHHHHHHHHH
Q 000167 461 VRDAAFSVLAAI 472 (1972)
Q Consensus 461 VR~aA~~~l~~l 472 (1972)
+|.-|..+|..+
T Consensus 124 iRasALRvlSsI 135 (968)
T KOG1060|consen 124 IRASALRVLSSI 135 (968)
T ss_pred HHHHHHHHHHhc
Confidence 999999988644
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.33 E-value=0.42 Score=62.78 Aligned_cols=396 Identities=15% Similarity=0.169 Sum_probs=230.6
Q ss_pred HHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcc
Q 000167 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (1972)
Q Consensus 722 l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 801 (1972)
++..+ ...+......++..|..++..+....+ ...+.+++.. ||.|+++.||.-+.+.++.+-...+..+
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~------- 112 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAA------- 112 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHH-------
Confidence 44443 344666677788888888876654333 4567777877 4999999999998887554432211000
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000167 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (1972)
Q Consensus 802 kp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll 881 (1972)
+- +...+ +-+.++..+.+.+-.+.+.|+..|..+.
T Consensus 113 ------------~~-----------------------------~~~~~----l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 113 ------------QL-----------------------------LVDNE----LLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred ------------HH-----------------------------hcCcc----HHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 00 00001 3345777889999999999999999887
Q ss_pred HHccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHH
Q 000167 882 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLT 958 (1972)
Q Consensus 882 ~~a~~~I~~~~~-~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~Aa~~ 958 (1972)
... ..+. ..| .++...|...+...|..++...+.++..++..- .....++.. +++.++..+.+....|+-.+.+
T Consensus 148 ~~~-~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 1110 011 233677777777667778887888877776443 333344443 9999999999988899999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhccCCC--CCC----hhhhHHHHHhhcCCCC
Q 000167 959 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGA-EGRKDLFDWLSKQLTGLSG--FPD----AAHLLKPASIAMTDKS 1025 (1972)
Q Consensus 959 aL~~i~~~~~-l-----~~ll~~l~~~L~~~~~~~-~~R~~~l~~L~~~l~~~~~--~~~----~~~ll~pl~~~L~D~~ 1025 (1972)
.+..++..-. . ..+++.|...+.+...+| -...-+.+.+ .++..... ... ...++..+..+++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999988432 1 236667777776544455 2222222222 22222211 111 2233344666778899
Q ss_pred HHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000167 1026 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1104 (1972)
Q Consensus 1026 ~dVR~aA~~~l~~l~~~~-G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1104 (1972)
...+..|..+++.+.... |...+ ..+-.+.-+..+..+.+..+.. +
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~-----~------------------------- 350 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSG-----S------------------------- 350 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCC-----c-------------------------
Confidence 999999999999886443 33222 1112222222222222111100 0
Q ss_pred CCCCCCCCCCCCcccccchhhhhhhhccccCCCChHHhhh-hhccc-c--cccCCChhhHHHHHHHHHHhhhH---H-HH
Q 000167 1105 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F--KFEDPRIEQIQELENDMMKYFRE---D-LH 1176 (1972)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~-~~~~k-~--~f~~~~~e~ve~L~~q~~~~~~~---~-l~ 1176 (1972)
-+-|.+ +..+. + ...+...+++-.+...+...++. . ++
T Consensus 351 ----------------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 351 ----------------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred ----------------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 000000 00000 0 00111223332333333333222 1 44
Q ss_pred HhhcCccHHH-HHHHHHHHHHhcCcch-hhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHH
Q 000167 1177 RRLLSTDFKK-QVDGLEMLQKALPSIR-KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (1972)
Q Consensus 1177 ~~lf~~d~k~-~~~al~~L~~~l~~~~-~~~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~ 1243 (1972)
-.+...+|-+ |++|+..|...+...- ...+.+.--++.|++-|-.|++..+...-.+++..+.....
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 4455678765 8999999988876642 22344455689999999999999999999999998765444
No 47
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.1 Score=67.38 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000167 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1972)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~ 400 (1972)
++...|++.|+..|++....++..|+++||..|...+ .....++.+|+..++.....|..++...++.++......
T Consensus 388 sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 388 SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence 4567788888888986666799999999999998776 356689999999999999999999999999998862111
Q ss_pred hHhHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 401 LVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 401 l~~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
-..++..+...+++ +.|.-|..++..+....+. ..+..+.++..+.+...|-.++||-.....-..+.
T Consensus 464 h~~ii~~La~lldti~vp~ARA~IiWLige~~e~-----vpri~PDVLR~laksFs~E~~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 464 HLEILFQLARLLDTILVPAARAGIIWLIGEYCEI-----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLY 532 (968)
T ss_pred HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh-----cchhchHHHHHHHHhhccccchhhHHHHHhhhhhe
Confidence 22466666666764 5677776666555544433 33455777778888888888888877666554443
No 48
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.22 E-value=0.018 Score=76.92 Aligned_cols=301 Identities=15% Similarity=0.212 Sum_probs=193.3
Q ss_pred HHHHHhhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchh--
Q 000167 604 ADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK-- 680 (1972)
Q Consensus 604 ~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~-- 680 (1972)
.-+..++++ +.-..|++|++.|...-.-.+. +.-.+-++.++.. .|.|+-.+|+..++++|..++..-.++.+.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d-e~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD-EVKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch-HHHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 334444444 3456788999888765443322 1234556666643 578999999999999999988765555432
Q ss_pred --hHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhhcChhHHHHHHHH--hhhhCCChH----HHH-HHHHHHHHHHHH
Q 000167 681 --CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYK--IMKDHKNPK----VLS-EGILWMVSAVED 748 (1972)
Q Consensus 681 --~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~~~~~~vl~~l~~--~l~~~KnpK----v~~-e~l~~L~~~i~~ 748 (1972)
....++|.|-.-+.|. .+|-.-..+|-.++....-=..+.+... ++.+..|.. ... .-+..|.
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~----- 576 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH----- 576 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-----
Confidence 2345667776666662 3565555566655543110000111111 111111110 000 0011111
Q ss_pred hCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000167 749 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1972)
Q Consensus 749 fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~ 828 (1972)
..+-+.+..+ +.++.+.||.+-.+-++.|+.++|.. +
T Consensus 577 --------~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k----------- 613 (1431)
T KOG1240|consen 577 --------HTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K----------- 613 (1431)
T ss_pred --------HHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c-----------
Confidence 1233345566 78888999999999999999888721 0
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhh-HHHHHHhccccc
Q 000167 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDS 907 (1972)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~e-L~~~L~~~L~Ds 907 (1972)
+ . |+ |.+-++.-+.|++|.-|-.-.+.+-.+. -.+......| +++.|.+.|.|.
T Consensus 614 -s-----------N------D~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 614 -S-----------N------DV---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred -c-----------c------cc---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCc
Confidence 0 1 12 5567888899999999999888877653 3444442244 567778889999
Q ss_pred hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHHHHHHHHh
Q 000167 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVPYVTTALT 981 (1972)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~----l~~ll~~l~~~L~ 981 (1972)
..-|+..||.++..|++. |--=++++..++..++-.|...+..||.++...+-++.+.++ .-.+.|.|-+.|.
T Consensus 669 EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred chhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999999999999998863 222356788888888889999999999999999999999886 2346677766666
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.13 E-value=0.41 Score=62.88 Aligned_cols=187 Identities=20% Similarity=0.270 Sum_probs=112.0
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCC----CCC-CChHHHHHHHHHHhccc--CHHHHHHHHHHHHHHHHHhhhchhhh
Q 000167 291 WEGVKATKWSERKDAVAELTKLASTKR----IAP-GDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSGS 363 (1972)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~~k----i~~-~~y~~l~~~L~k~l~D~--N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (1972)
...+.+.+--.|..+++.|..++..+. +.. +-+..|+..|...-.|. +....-..++..+.++..-...+-..
T Consensus 208 l~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~ 287 (503)
T PF10508_consen 208 LKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL 287 (503)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH
Confidence 334555666667888888888775321 111 22333333333333344 44444455577777776522333333
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cC--------CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000167 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~--------~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~ 433 (1972)
.+.++..++..+....+..+..|.+++..+... |. ..+..++..+.....+....+|..+++.++.++..
T Consensus 288 ~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 288 YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 455666666666778888899888888877643 10 01223344444445566678999999999998765
Q ss_pred cCh---hHHHHhh---------hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-hC
Q 000167 434 SSK---AAVLKVH---------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS-VG 477 (1972)
Q Consensus 434 ~~~---~~l~~~l---------~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~-~g 477 (1972)
... ..+.... +.....+...+.-+.|++|-+|...+..++.+ +|
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 432 1111111 11112788889999999999999999988855 44
No 50
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=1.9 Score=56.71 Aligned_cols=124 Identities=17% Similarity=0.140 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHH-HhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHH
Q 000167 347 QAIGNLARGLRTHFSGSSRFLLPVLLE-KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLN 425 (1972)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~~llp~LL~-klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~ 425 (1972)
+=+|+||-.|-=+=.+-+-.++...++ -+...++.|+-.|-.++..++.- --..++.|++..-++|.+|.+|.-++.
T Consensus 87 KRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~L 164 (866)
T KOG1062|consen 87 KRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAAL 164 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHH
Confidence 346677665533323334444444444 47888888887777777766542 335688999999999999999999998
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000167 426 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 426 ~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
...+++.+.+. ....+++...+.|.|.+..|=-++...+..+++.-.
T Consensus 165 ca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 165 CAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 88898876543 247788999999999999998888888877777544
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.10 E-value=0.0037 Score=62.52 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCC
Q 000167 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKL 985 (1972)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~ 985 (1972)
+..++..+..++.++|..+.+|++.++|+++.++.|+...||-+|.++|..+++..+ ...+++.+...+.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~-- 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP-- 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 456788899999999999999999999999999999999999999999999998876 233344444444444
Q ss_pred ChhHHHHH
Q 000167 986 GAEGRKDL 993 (1972)
Q Consensus 986 ~~~~R~~~ 993 (1972)
++.+|..+
T Consensus 81 d~~Vr~~a 88 (97)
T PF12755_consen 81 DENVRSAA 88 (97)
T ss_pred chhHHHHH
Confidence 46667554
No 52
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.068 Score=67.80 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=127.1
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~k---i~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (1972)
....++.+.+=..+..+...++++.+..+ +...--..+++.|...+. +.+..+..+|+-++..+|.|-...-.-++
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 34556677788889999999999885433 322222356777777887 88899999999999999998765444333
Q ss_pred h-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh------HHHHHHHHhhcCCh-HHHHHHHHHHHHHHHhcCh
Q 000167 365 R-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIETSSK 436 (1972)
Q Consensus 365 ~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~------il~~l~~~l~~Knp-~vR~~~l~~L~~~l~~~~~ 436 (1972)
. ..+|.++..+......|++.+.-||..+... +..+.+ +++.++..+....+ ...+.+...|..+.....+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 2 5688889999999999999999999998876 333333 45666666665554 3333444444444443323
Q ss_pred hHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 437 ~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
+.-...+..++|+|..++.+.|++|..-|+-++.-+
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222245688999999999999999985555444433
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.04 E-value=0.0024 Score=63.83 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc
Q 000167 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1972)
Q Consensus 301 eR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (1972)
.|+.+|-.|.+++- -++-....+..|++.+.+.++|.+..|+..||+++..+++..+..+-+|...++..|.+.+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 58999999988653 22222234578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000167 380 PTVAESLTQTLQAMH 394 (1972)
Q Consensus 380 ~~V~~aa~~aL~al~ 394 (1972)
+.|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999988 5565554
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.02 Score=72.36 Aligned_cols=267 Identities=14% Similarity=0.186 Sum_probs=169.9
Q ss_pred HHHHHHHhhhhCCChHHHHHHHHHHHHHHHH---hCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhH
Q 000167 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVED---FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794 (1972)
Q Consensus 718 vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~---fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l 794 (1972)
+++.+...+..+.+|+++.++...|.++... .....++-. -++.+..+ +.+++..||+-|...|+-+... |+.+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~ag-avp~fi~L-l~s~~~~v~eQavWALgNIagd-s~~~ 186 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAG-AVPIFIQL-LSSPSADVREQAVWALGNIAGD-SPDC 186 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCC-chHHHHHH-hcCCcHHHHHHHHHHHhccccC-ChHH
Confidence 4556666665677899999999999988762 111122222 23334456 8999999999999888766421 2334
Q ss_pred HhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCC-HHHHHHH
Q 000167 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPD-WKVRLES 873 (1972)
Q Consensus 795 ~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~-Wk~R~ea 873 (1972)
++|.=+ .. +.+.|+..+...+ -.....+
T Consensus 187 Rd~vl~--~g-------------------------------------------------~l~pLl~~l~~~~~~~~lRn~ 215 (514)
T KOG0166|consen 187 RDYVLS--CG-------------------------------------------------ALDPLLRLLNKSDKLSMLRNA 215 (514)
T ss_pred HHHHHh--hc-------------------------------------------------chHHHHHHhccccchHHHHHH
Confidence 444300 00 1112333332222 2455566
Q ss_pred HHHHHHHHHHccccCCCC--ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh-hHHHHHHHHhCCCcH
Q 000167 874 IEAVNKILEEANKRIQPA--GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKK 950 (1972)
Q Consensus 874 le~l~~ll~~a~~~I~~~--~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~-~llp~ll~~L~D~k~ 950 (1972)
.-.|..++.+.+ =.|. ...+++++|...+...+..|...||-+|..|+..-.....-.+. .++|.++..|+..+.
T Consensus 216 tW~LsNlcrgk~--P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 216 TWTLSNLCRGKN--PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 777888887532 1222 24678889999998888899999999999987654444333333 488999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CCh-hhhHHHHHhh
Q 000167 951 HMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDA-AHLLKPASIA 1020 (1972)
Q Consensus 951 ~Vr~Aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~-~~ll~pl~~~ 1020 (1972)
.|+..|..++..++.... -...+|.+...|.... ....|.+++=.+...-...... .-+ ..++++|+.+
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~-~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~ 372 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP-KESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINL 372 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc-chhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHH
Confidence 999999998888665443 1346777777776321 2346787775555433222110 111 2455669999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 000167 1021 MTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1021 L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
|....-++|+.|.-++.-+..
T Consensus 373 l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 373 LQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HhccchHHHHHHHHHHHhhcc
Confidence 999899999999887765543
No 55
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=3.3 Score=56.28 Aligned_cols=371 Identities=17% Similarity=0.130 Sum_probs=194.3
Q ss_pred hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-C
Q 000167 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F 1007 (1972)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~-~ 1007 (1972)
.+++.++-.++..+.|+...||=+|...+..+..+.+ .+.++..+.+.+.-.. .+..=.+++-.|++.-. -+- .
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e-~~~aWHgacLaLAELA~-rGlLl 414 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE-DDSAWHGACLALAELAL-RGLLL 414 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC-chhHHHHHHHHHHHHHh-cCCcc
Confidence 5778899999999999999999999999999999988 3455565555332110 11122355656655322 111 2
Q ss_pred CChhhhHHH-HHhhc--CC------CCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc----cCCC
Q 000167 1008 PDAAHLLKP-ASIAM--TD------KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN----GASQ 1074 (1972)
Q Consensus 1008 ~~~~~ll~p-l~~~L--~D------~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~----~~~~ 1074 (1972)
+...+.+.| |.+.| ++ ....||.+|...+++|.+......|.+++..|-++-. +.+..|+. |++.
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL--~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL--IVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH--HHHhcCchhhHhHHHH
Confidence 334445555 55554 22 3457999999999999999999888887766654422 22222221 1000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcccccchhhh-hhhhccccCCCChHHhhhhhccccccc
Q 000167 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAV-QSQALLNVKDSNKEDRERMVVRRFKFE 1153 (1972)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~R~~~~~~k~~f~ 1153 (1972)
+ +--.-+++.+ ..|- +.+- .+.-.+.+.+-.+--+ .+.
T Consensus 493 ---------A-----AlqE~VGR~~-------------n~p~------Gi~Lis~~dy~sV~~rsNcy~----~l~---- 531 (1133)
T KOG1943|consen 493 ---------A-----ALQENVGRQG-------------NFPH------GISLISTIDYFSVTNRSNCYL----DLC---- 531 (1133)
T ss_pred ---------H-----HHHHHhccCC-------------CCCC------chhhhhhcchhhhhhhhhHHH----HHh----
Confidence 0 0000011111 0100 0000 0000011111000000 000
Q ss_pred CCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCcchhhHH-HHHHHHHHHHHHhhcCcchHHHHHHH
Q 000167 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-EVLDILLRWFVLQFCKSNTTCLLKVL 1232 (1972)
Q Consensus 1154 ~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~~i-~~lDlllk~~~lr~~dtN~~vl~k~L 1232 (1972)
..+.+...-...+|..-+...++|=|-+-|-.+-..|.+.-...++... -++--+++++...=.+.-..+...+=
T Consensus 532 ----~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ 607 (1133)
T KOG1943|consen 532 ----VSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAG 607 (1133)
T ss_pred ----HHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHH
Confidence 1112222223456777788889998888887777777764333333333 13333444421100001111222222
Q ss_pred hhHHHHHHHHHhcC--C-CCCHHHHHh---hhhHHHHhhCCCh--HHHHHHHHHHHHHHhhcCCc-------cccHHHHH
Q 000167 1233 EFLPELFDTLRDEG--Y-SLTESEAAV---FLPCLVEKSGHNI--EKVREKMRELTKQIVNFYSA-------TKTLPYIL 1297 (1972)
Q Consensus 1233 d~l~~l~~~l~~~~--y-~l~~~Ea~~---~lp~L~~K~Gd~k--~~vr~~v~~il~~~~~v~~~-------skvf~~l~ 1297 (1972)
++ +..+.... + .+.+.+... ++|.+..+-=+.+ +.+|..+-..++++...-+. ++....|.
T Consensus 608 ev----~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~ 683 (1133)
T KOG1943|consen 608 EV----IGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLA 683 (1133)
T ss_pred HH----HHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 22 22233332 2 255666666 4888877764433 77888777777777654332 22333444
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH--HHHHhhhcCCchHHHHHHHHHHH
Q 000167 1298 EGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAERDGEIRKAALNTLA 1356 (1972)
Q Consensus 1298 ~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~k~l--~~ia~~i~drd~~VR~aAl~~l~ 1356 (1972)
+.+...| -.|.+....++.++..|-+...+..-.+ ..|+.+.+..+..+|..-.-+++
T Consensus 684 ~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~ 743 (1133)
T KOG1943|consen 684 QNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALG 743 (1133)
T ss_pred HhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHc
Confidence 5565555 7799999999999999976542222222 55555555555555554444443
No 56
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.18 Score=64.15 Aligned_cols=264 Identities=17% Similarity=0.204 Sum_probs=149.3
Q ss_pred hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhh-ChhH
Q 000167 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV-GPDI 794 (1972)
Q Consensus 716 ~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~-G~~l 794 (1972)
+.++..+... .....++||..+++.|-.+-+ |++ +. +..-....+. +.|.+..||.+|++++...-... ++.
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k-L~-~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~- 269 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK-LS-KACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPL- 269 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc-cc-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCcc-
Confidence 3444444444 467889999999988877766 332 11 3455666777 89999999999999887765444 221
Q ss_pred Hhhhhc--ccH----------------------------------HHHHHHHHHHhcCCCCCCCCCCCccccccccCCCC
Q 000167 795 KGFLAD--VKP----------------------------------ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1972)
Q Consensus 795 ~~~L~~--lkp----------------------------------~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~ 838 (1972)
..+-++ ++. .+.++|++..-..--....+-.|+. ...+.+ ..
T Consensus 270 e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk-~l~s~G-ew 347 (823)
T KOG2259|consen 270 ERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPK-ALYSSG-EW 347 (823)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchH-HHHhcC-Cc
Confidence 111100 011 1112222211100000000000000 000000 00
Q ss_pred CCC---CCCCCccc-------c-cccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc
Q 000167 839 SGG---SDGLPRED-------I-SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 907 (1972)
Q Consensus 839 ~~~---~d~lprvd-------I-s~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds 907 (1972)
+.| .+..|..+ | ..--.+.|+-+++|.=+.+|.+|+..+..+... .|..-..-+..|...++|-
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-----sP~FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-----SPGFAVRALDFLVDMFNDE 422 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHhccH
Confidence 001 11222211 1 112235677888999999999999999998753 1222256778889999999
Q ss_pred hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCC
Q 000167 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAK 984 (1972)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~~ 984 (1972)
-..|+..|+..+..|+..+ ..-+..++.++..|.|....||++....|... +... +..++..+...|. +
T Consensus 423 ~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~~lL~~L~--k 494 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLECIDMCVAHLLKNLG--K 494 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhh--h
Confidence 9999999999999998764 23356789999999999999999876655431 1011 2223333333333 2
Q ss_pred CChhHHHHHHHHHHHHhc
Q 000167 985 LGAEGRKDLFDWLSKQLT 1002 (1972)
Q Consensus 985 ~~~~~R~~~l~~L~~~l~ 1002 (1972)
-|+-|-+++..+...=+
T Consensus 495 -yPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 495 -YPQDRDEILRCMGRIGQ 511 (823)
T ss_pred -CCCCcHHHHHHHHHHhc
Confidence 25556666666654433
No 57
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.80 E-value=0.078 Score=71.28 Aligned_cols=288 Identities=15% Similarity=0.091 Sum_probs=185.8
Q ss_pred HHHHHHHhhhcchh---hhHHHHHHHHHHHhhcChhHHHHHHHHhh---hhCCChHHHHHHHHHHHHHHHHh---CCC--
Q 000167 684 LCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDF---GVS-- 752 (1972)
Q Consensus 684 ~il~~LveKlgd~K---~r~~a~~~L~~l~e~~~~~~vl~~l~~~l---~~~KnpKv~~e~l~~L~~~i~~f---G~~-- 752 (1972)
.+++.+...+-..| .|-.|.+.|..++...+-+..+.+++++. +.+..++||..++.+|.+++.-. ...
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 34444444444433 57788888888888887777777777654 46778999999999999998632 221
Q ss_pred CCChhhHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCC---CCCCCCCCcc
Q 000167 753 HLKLKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTV 828 (1972)
Q Consensus 753 ~l~~k~li~~l~~~gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~---~~~~~p~r~~ 828 (1972)
.+-+.-+++.+..+ +.+ ++..||-+-..++..|.... ..|+ +.-++.... ..+-..+.+
T Consensus 502 niF~eYlfP~L~~l-~~d~~~~~vRiayAsnla~LA~tA----~rFl-----------e~~q~~~~~g~~n~~nset~~- 564 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHL-LNDSSAQIVRIAYASNLAQLAKTA----YRFL-----------ELTQELRQAGMLNDPNSETAP- 564 (1431)
T ss_pred hhhHhhhhhhhHhh-hccCccceehhhHHhhHHHHHHHH----HHHH-----------HHHHHHHhcccccCccccccc-
Confidence 12245677778777 777 66679999999888876432 1222 111111000 000000000
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccch
Q 000167 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908 (1972)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN 908 (1972)
.+ .......++...+-.-+...+.|..--+|..-|+.|..++.=- .+.+.+ .=|+..|..-|+|..
T Consensus 565 -~~----------~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF-Gk~ksN--D~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 565 -EQ----------NYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF-GKEKSN--DVILSHLITFLNDKD 630 (1431)
T ss_pred -cc----------ccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-hhcccc--cchHHHHHHHhcCcc
Confidence 00 0000111122212223445568888888988888888777521 233343 336778888899999
Q ss_pred HHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----chhhHHHHHHHHhcC
Q 000167 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----LDKMVPYVTTALTDA 983 (1972)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-----l~~ll~~l~~~L~~~ 983 (1972)
..++..=...|..++--+|.- ..-+.++|-+.+.|.|..+.|...|..|+..+++.-- +..++..+.+.|-++
T Consensus 631 w~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP 708 (1431)
T ss_pred HHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc
Confidence 999887777777666666644 1235688999999999999999999999999998754 344666777778888
Q ss_pred CCChhHHHHHHHHHHHHhccCCC
Q 000167 984 KLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 984 ~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
|--+|.+++.++......+..
T Consensus 709 --N~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 709 --NLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred --hHHHHHHHHHHHHHHHhhhhh
Confidence 567999999999877766654
No 58
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.80 E-value=0.5 Score=60.67 Aligned_cols=191 Identities=18% Similarity=0.232 Sum_probs=136.6
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHcChhhHhhh
Q 000167 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1972)
Q Consensus 857 ~ll~~-l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (1972)
.++.. ....++-.|..+++.+..+++ |......+.+++..+...+ ..........++.++..+++++=-.-.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvN---K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVN---KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44443 344469999999999998874 4333334567777777766 556667788899999999998744445778
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCCCChhHHHHHHH
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFD 995 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~--------~-----------l~~ll~~l~~~L~~~~~~~~~R~~~l~ 995 (1972)
..++..+++.|.| +.+...+..++..++.-. + ...++|.+.+..++. +...|...+.
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ 345 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHH
Confidence 8899999999999 667788888888777652 1 233556666666544 3346788888
Q ss_pred HHHHHhccCCCC---CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000167 996 WLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1972)
Q Consensus 996 ~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1972)
.|...+.+.|.. +++..+++-++.+|.=.+.+||.++-.++..++..- .+.+.++++.|
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 888888887762 455555555899998888899999999999888766 55666665433
No 59
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.48 Score=61.10 Aligned_cols=253 Identities=13% Similarity=0.186 Sum_probs=142.1
Q ss_pred HHHHhCCCccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCC
Q 000167 155 ALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPT 234 (1972)
Q Consensus 155 ~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~ 234 (1972)
-|..|++.-+ .+.+-.-+..+|+|+-+-||..|+.++--+|-.-.+ ++++.+ ..|+ +++..+ -|.
T Consensus 132 GLS~fvTpdL-ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~~F-prL~-----------EkLeDp-Dp~ 196 (877)
T KOG1059|consen 132 GLSCIVTPDL-ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRPCF-PRLV-----------EKLEDP-DPS 196 (877)
T ss_pred ccccccCchh-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhhhH-HHHH-----------HhccCC-Cch
Confidence 3456777322 266888888889999999999988888777766655 465543 3321 122211 110
Q ss_pred cchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhh--ccCChHHHHHHHHHHHHH
Q 000167 235 RKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV--KATKWSERKDAVAELTKL 312 (1972)
Q Consensus 235 R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l--~s~kWkeR~eaL~~L~~l 312 (1972)
+-|.+..- -.|- +-. +|-.+ +. |- +.||+.+ .+.||---+ -++.+.+|
T Consensus 197 --V~SAAV~V-ICEL-------------ArK-----nPkny------L~-LA-P~ffkllttSsNNWmLIK-iiKLF~aL 246 (877)
T KOG1059|consen 197 --VVSAAVSV-ICEL-------------ARK-----NPQNY------LQ-LA-PLFYKLLVTSSNNWVLIK-LLKLFAAL 246 (877)
T ss_pred --HHHHHHHH-HHHH-------------Hhh-----CCccc------cc-cc-HHHHHHHhccCCCeehHH-HHHHHhhc
Confidence 11111000 0000 000 11111 11 22 4788877 458995321 22323333
Q ss_pred hc-CCCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHH--HHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHH
Q 000167 313 AS-TKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNL--ARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQ 388 (1972)
Q Consensus 313 ~~-~~ki~~~~y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~L--a~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~ 388 (1972)
.- .|++- ..|+.-|...|.. .--.+..++++|+-.- ..|+..+ ...+..++.-|=.-+-|+.++..=-+.-
T Consensus 247 tplEPRLg----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~-~asiqLCvqKLr~fiedsDqNLKYlgLl 321 (877)
T KOG1059|consen 247 TPLEPRLG----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH-SASIQLCVQKLRIFIEDSDQNLKYLGLL 321 (877)
T ss_pred cccCchhh----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc-HHHHHHHHHHHhhhhhcCCccHHHHHHH
Confidence 31 33322 2455555555552 2223444444444221 2223333 3345666666666677888888877777
Q ss_pred HHHHHHHhcCCChHhH---HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCh-HHHHH
Q 000167 389 TLQAMHKAGCLNLVDV---VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP-EVRDA 464 (1972)
Q Consensus 389 aL~al~~~~~~~l~~i---l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~-~VR~a 464 (1972)
|+.-+.. +++..| -+.|+.+|.++.+.+|..++..|.-.+.. +.+.+|+..|+.-+.+++. .-|+.
T Consensus 322 am~KI~k---tHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-------kNl~eIVk~LM~~~~~ae~t~yrde 391 (877)
T KOG1059|consen 322 AMSKILK---THPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-------KNLMEIVKTLMKHVEKAEGTNYRDE 391 (877)
T ss_pred HHHHHhh---hCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhccchhHHHH
Confidence 7777765 455544 46678999999999999999999877653 3357788888888888877 55554
Q ss_pred HHH
Q 000167 465 AFS 467 (1972)
Q Consensus 465 A~~ 467 (1972)
-.-
T Consensus 392 ll~ 394 (877)
T KOG1059|consen 392 LLT 394 (877)
T ss_pred HHH
Confidence 433
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.71 E-value=0.1 Score=67.00 Aligned_cols=190 Identities=15% Similarity=0.180 Sum_probs=148.9
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH
Q 000167 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~-~y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (1972)
...++..|..+++.+..+++ |...+ .+.+++..+...+ ..........++.++.-+++||=-+-.+....++..++
T Consensus 200 ~~~~~~~~~~~~~~la~LvN--K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVN--KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45669999999998888876 34333 4667777777777 45666678888999999999986666788999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh-c-----CCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000167 373 EKLKEKKPTVAESLTQTLQAMHKA-G-----CLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1972)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~-~-----~~~-----------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (1972)
+.+.+ +.+...+..++..++.- . +.+ +..++|.+.++.+..+...|...+..|..++.+.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 55677777888777754 0 011 34567888888887776799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhcc
Q 000167 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (1972)
Q Consensus 436 ~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld 489 (1972)
++.+...++.++|.+.++|+=.+++||.++.+++..+..--. ..+..++..|-
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~-~~i~~hl~sLI 408 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP-ELISEHLSSLI 408 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHH
Confidence 998889999999999999999999999999999988876653 34555555543
No 61
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=1.4 Score=58.04 Aligned_cols=128 Identities=14% Similarity=0.240 Sum_probs=81.4
Q ss_pred hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--ch
Q 000167 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LD 970 (1972)
Q Consensus 893 ~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~ 970 (1972)
..++..-|+..-.+-+...+..|+++++.+|...... ..++..++..+.-+...|.+.+...+..+.+.++ .+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 3566777777777888888899999999888665333 5677778888877777788888888888888876 45
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHH-HHhccCCCCCChhhhHHHHHhhcCCCCHHHHH
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLS-KQLTGLSGFPDAAHLLKPASIAMTDKSSDVRK 1030 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~-~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~ 1030 (1972)
.+++.+...+.+=. +|+.|.. +.|+. ++.... ++...++.-++..+.|....|+-
T Consensus 423 ~vv~~l~~~~~sl~-epeak~a-miWilg~y~~~i---~~a~elL~~f~en~~dE~~~Vql 478 (734)
T KOG1061|consen 423 SVVAILCENLDSLQ-EPEAKAA-LIWILGEYAERI---ENALELLESFLENFKDETAEVQL 478 (734)
T ss_pred hhhhhhcccccccC-ChHHHHH-HHHHHhhhhhcc---CcHHHHHHHHHhhcccchHHHHH
Confidence 56665555544321 4665554 44543 322222 23344455555566666555543
No 62
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.60 E-value=0.041 Score=61.94 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh
Q 000167 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (1972)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L 945 (1972)
++.+|..++..+..++..- |+.....++.+..+|.|.+..|+..|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 4678999999999998642 343456778888999999999999999999998753 44444456778899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------CCChhHHHHHHHHHHHHhcc
Q 000167 946 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1003 (1972)
Q Consensus 946 ~D~k~~Vr~Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~-------~~~~~~R~~~l~~L~~~l~~ 1003 (1972)
.|.++.||+.|..++..+...-+ +...++.+...|.+. ..+.+-|..++.++...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998843 455666666666532 22456678888888777763
No 63
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.86 Score=59.11 Aligned_cols=306 Identities=13% Similarity=0.200 Sum_probs=168.5
Q ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHH
Q 000167 897 FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVP 974 (1972)
Q Consensus 897 ~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~ 974 (1972)
.+++++-|...|--|+-.+++.+..|-. ...++.++|.+..+|......||.-|.-|+.++..... +...-+
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDape 174 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPE 174 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHH
Confidence 3455666777888888888887765521 24578899999999999999999999999999998732 111111
Q ss_pred HHHHHHhcCCCChhHH------------HHHHHHHHHHhccCCCCCChhhhH-HHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 975 YVTTALTDAKLGAEGR------------KDLFDWLSKQLTGLSGFPDAAHLL-KPASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 975 ~l~~~L~~~~~~~~~R------------~~~l~~L~~~l~~~~~~~~~~~ll-~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
.+...|.... .|.-+ ..++.||..++...+...+..+++ .-++.-...+++.-|..-.+|+-.+..
T Consensus 175 Li~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~ 253 (948)
T KOG1058|consen 175 LIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLS 253 (948)
T ss_pred HHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHh
Confidence 2333443211 22222 345667766666665432222222 222221122556555555555544443
Q ss_pred HcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCccccc
Q 000167 1042 AGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSV 1121 (1972)
Q Consensus 1042 ~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1121 (1972)
.-....+.+....|-. .+ ..|.+. +
T Consensus 254 stssaV~fEaa~tlv~---------------------------------------------lS--------~~p~al--k 278 (948)
T KOG1058|consen 254 STSSAVIFEAAGTLVT---------------------------------------------LS--------NDPTAL--K 278 (948)
T ss_pred cCCchhhhhhcceEEE---------------------------------------------cc--------CCHHHH--H
Confidence 3322111111110000 00 000000 0
Q ss_pred chhhhhhhhccc-----cCCCChHHhhhhhcccccccCCChhhHHHHHHHHHHhhh---HHHHHhhcCccHHHHHHHHHH
Q 000167 1122 QDFAVQSQALLN-----VKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR---EDLHRRLLSTDFKKQVDGLEM 1193 (1972)
Q Consensus 1122 ~~~~~~~~~~~~-----~~~~~k~~R~~~~~~k~~f~~~~~e~ve~L~~q~~~~~~---~~l~~~lf~~d~k~~~~al~~ 1193 (1972)
..++..+. ..+|.|- .+ .|-+.+|++....++. =+++.-|-+.|+.-|-++++.
T Consensus 279 ----~Aa~~~i~l~~kesdnnvkl-----Iv---------ldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi 340 (948)
T KOG1058|consen 279 ----AAASTYIDLLVKESDNNVKL-----IV---------LDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDI 340 (948)
T ss_pred ----HHHHHHHHHHHhccCcchhh-----hh---------HHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence 00000100 0112121 10 0111122221222222 267777889999999999998
Q ss_pred HHHhcCcchhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhCCChHHHH
Q 000167 1194 LQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVR 1273 (1972)
Q Consensus 1194 L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~Gd~k~~vr 1273 (1972)
..+...+. |..-+..++..++.+||..-..+.-.|=+.|+..+....-.|.++ |+..||.|++-+||..+..-
T Consensus 341 ~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fisD~N~~aa 413 (948)
T KOG1058|consen 341 ALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFISDSNEAAA 413 (948)
T ss_pred HHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHhccCCHHHH
Confidence 77775442 333355666778888877655555566666677776666778877 88899999999999887776
Q ss_pred HHHHHHHHHHhhcCCc
Q 000167 1274 EKMRELTKQIVNFYSA 1289 (1972)
Q Consensus 1274 ~~v~~il~~~~~v~~~ 1289 (1972)
..|-..++.....||.
T Consensus 414 s~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 414 SDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHHHHHHHHHhCch
Confidence 6665555555555553
No 64
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.26 Score=64.41 Aligned_cols=364 Identities=20% Similarity=0.204 Sum_probs=208.0
Q ss_pred hhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000167 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1972)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~ 89 (1972)
+|---|+-.-+.|++-=.|..+---+.+++....+ --.-.-+.+.++.++.|+|+.|--.|+.+|....+.-...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~--- 194 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV--- 194 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC---
Confidence 44444566666666666666666666666542111 0001124566677788888888888888887776654321
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHH----HHHHHHHHhhh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000167 90 YAKEVCDAIAAKCLTGRPKTVEKA----QAVFMLWVELE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (1972)
Q Consensus 90 ~~~~v~~~LveK~l~~k~~~k~~a----~~~ll~~~E~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~- 162 (1972)
....+.+.++.+.+.+....-+.+ ++++..|.--+ ..+.+++.+.+.+.|-|+-++.+++..+...+..+-.-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 111233334444443333333333 33333333111 12467777788888888888888888887777655430
Q ss_pred ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhh
Q 000167 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (1972)
Q Consensus 163 ~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (1972)
..-.+.+-+.+..+++... . +---.+++++- ++...+.....++.-.|-
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e-------~qyvaLrNi~l------il~~~p~~~~~~~~~Ff~----------------- 323 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-E-------IQYVALRNINL------ILQKRPEILKVEIKVFFC----------------- 323 (734)
T ss_pred HHHHHHhcccceeeecccc-h-------hhHHHHhhHHH------HHHhChHHHHhHhHeeee-----------------
Confidence 0012223333333333211 1 00011222210 001111111001100000
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC
Q 000167 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (1972)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~ 322 (1972)
.+.|| .| .+.+-++.+..+++. .+
T Consensus 324 -------------------------------kynDP-----------iY---------vK~eKleil~~la~~-----~n 347 (734)
T KOG1061|consen 324 -------------------------------KYNDP-----------IY---------VKLEKLEILIELAND-----AN 347 (734)
T ss_pred -------------------------------ecCCc-----------hh---------hHHHHHHHHHHHhhH-----hH
Confidence 01111 11 122344555555532 23
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000167 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (1972)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~ 402 (1972)
..++...|+..-.+..+..+..|++||+.+|...... ..++..+|+.+.-+...|++.+...+..++.+..-..+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 5567778888778889999999999999999887654 56899999999988888988888999999987223346
Q ss_pred hHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch
Q 000167 403 DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 403 ~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
.++..+...+.+ .+|..|......+....+..+. ...++..+.+...|...+| ..+.+.+.+++|+.+
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~~f~en~~dE~~~V---ql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLESFLENFKDETAEV---QLELLTAAIKLFLKK 491 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHHHHHhhcccchHHH---HHHHHHHHHHHHhcC
Confidence 777777777764 6789886655555554444332 2556677788888887777 677788888877754
No 65
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.37 E-value=1.7 Score=53.68 Aligned_cols=148 Identities=10% Similarity=0.075 Sum_probs=91.3
Q ss_pred cCChHHHHHHHHHHHHHhc-CCC----------CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh-------
Q 000167 296 ATKWSERKDAVAELTKLAS-TKR----------IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR------- 357 (1972)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~-~~k----------i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~------- 357 (1972)
+..-|.|..||-.+..+++ -|+ +..++-+.--..+.-.++|.|.+++..|++....|-.|-+
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3445778899988776653 222 1111111111122334679999999999999988876643
Q ss_pred ----hchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHH
Q 000167 358 ----THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 358 ----~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~ 432 (1972)
..|.||...+.-.+++ +- .+ ++.+|. .-.|++-.+++..|+.++.
T Consensus 87 ~~~~~~ftpf~v~~a~si~~-----------~~-r~------------------l~~~l~~e~~~~~~tq~~kcla~lv~ 136 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRE-----------LH-RC------------------LLLALVAESSSQTVTQIIKCLANLVS 136 (728)
T ss_pred ccCCcCCCchHHHHHHHHHH-----------HH-HH------------------HHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 2355554433322221 11 11 112222 3456677778888888888
Q ss_pred hcChhHHH-HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 433 TSSKAAVL-KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 433 ~~~~~~l~-~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
..+-..+. ..+-.+...+++.+..+|+.||-.+.-.++.+.
T Consensus 137 ~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 137 NAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 77655554 456778888999999999999988887777654
No 66
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.34 E-value=0.085 Score=59.36 Aligned_cols=108 Identities=16% Similarity=0.249 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCC
Q 000167 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 416 (1972)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~l~~Kn 416 (1972)
|..|+..++.+++.|+... ...++..+|.+...+.|..+.||..+..++..++..+...+.. ++..++.++.+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 4568889999999998765 4566667889999999999999999999999998874455544 4488888999999
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
+.||..+..++..+.....+..+...+.+++-.
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~ 109 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISS 109 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999999988774444453333333333
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.33 E-value=0.0072 Score=53.79 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
|.+|..++..|.++.. .....+.++++.++|.|..+|.|++++||.+|..+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999988433 344456678899999999999999999999999999754
No 68
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.33 E-value=0.025 Score=55.35 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=69.7
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000167 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1972)
Q Consensus 368 lp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1972)
+|.|++.+ .++.+.||..+..+|. . ..-..+++.+...+++++|.+|..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~--~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----E--LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----C--CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----H--cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889988 9999999987766665 2 45568899999999999999999999998864 1 1567
Q ss_pred HHHHHHHhcC-CChHHHHHHHHHHH
Q 000167 447 VPICMECLND-GTPEVRDAAFSVLA 470 (1972)
Q Consensus 447 ~p~l~k~l~D-s~~~VR~aA~~~l~ 470 (1972)
++.|.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 8889998866 45677999999885
No 69
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.33 E-value=1.1 Score=53.54 Aligned_cols=239 Identities=15% Similarity=0.187 Sum_probs=162.1
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccc
Q 000167 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELIS 251 (1972)
Q Consensus 172 ~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~ 251 (1972)
.|-+.|.+.|..+|..|+.++.++...+.++ .|...++.-|-+-|
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--------~L~~~ev~~L~~F~--------------------------- 47 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--------FLSRQEVQVLLDFF--------------------------- 47 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--------hccHHHHHHHHHHH---------------------------
Confidence 4566788899999999999998888777542 23444444333322
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 000167 252 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLK 331 (1972)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~ 331 (1972)
.+++ .+|.-=..++..+.+|++...+..+....++..+.
T Consensus 48 ---------------------------------------~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~ 86 (262)
T PF14500_consen 48 ---------------------------------------CSRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSLF 86 (262)
T ss_pred ---------------------------------------HHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHH
Confidence 1222 23333345567777777655555555555555554
Q ss_pred HHhc--ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000167 332 KLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1972)
Q Consensus 332 k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l 408 (1972)
+-+. .--...+....+++..|...-+.....+...++..++..+ +||.|.-.--+...+..+... ..+....+++
T Consensus 87 ~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~l 164 (262)
T PF14500_consen 87 QNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAEDL 164 (262)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHHH
Confidence 4333 2222345566677777776655555566677888888887 888888777788888887776 4556777777
Q ss_pred HHHhh---------cCC-h--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 000167 409 KTSVK---------NKV-P--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 409 ~~~l~---------~Kn-p--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
.+.+. .+| | -.|.+.-.-|..|+..++. +.+..+|.+..-|..+.+.|+.-+.++|......+
T Consensus 165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 66542 122 2 4666777777888775432 23678899999999999999999999999999999
Q ss_pred CchhHHHhHhhccHHHH
Q 000167 477 GMRPLERSIEKLDDVRR 493 (1972)
Q Consensus 477 ge~~~~~~l~~Ld~~~~ 493 (1972)
|.+.+.++...+=..-|
T Consensus 240 ~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 240 GADSLSPHWSTIWNALK 256 (262)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 98888888887754433
No 70
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.31 E-value=9.5 Score=53.82 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=57.0
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
.+++.++..|+..+....+.+|.-|+..|..+++. ++..+ ..+.+...+-.-++|+...||+||.+.+|.+.-...+
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~-Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEA-DPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc-ChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 45667778888888877788898888888876653 33333 3466777777788899999999999888887755543
No 71
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.22 E-value=0.8 Score=57.04 Aligned_cols=154 Identities=20% Similarity=0.148 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHH
Q 000167 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (1972)
..|..|..++..+..+-. .+....|...+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 346788888887765431 566778888889988899999988888775433 5677888999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCC
Q 000167 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024 (1972)
Q Consensus 945 L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1024 (1972)
+.|....||.++..++..+ +...-.+.+...+.+. ++..+.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 9999999999988877654 5566667778888765 4555555555543 112234556678889999
Q ss_pred CHHHHHHHHHHHHHHHHHcChhHHHHH
Q 000167 1025 SSDVRKAAEACIVEILRAGGQETIEKN 1051 (1972)
Q Consensus 1025 ~~dVR~aA~~~l~~l~~~~G~~~~~~~ 1051 (1972)
+..+|..+...+..+.......+....
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~ 314 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLA 314 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999998888777655544444433
No 72
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.11 E-value=0.038 Score=61.72 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHH-hhhchhhhhhhHHHHH-----------HHH-hccCcHHHHHHHHHHHHHHHHhc---------
Q 000167 340 AVAVEAIQAIGNLARG-LRTHFSGSSRFLLPVL-----------LEK-LKEKKPTVAESLTQTLQAMHKAG--------- 397 (1972)
Q Consensus 340 ~V~~~A~~~l~~La~~-L~~~f~~~~~~llp~L-----------L~k-lkdkk~~V~~aa~~aL~al~~~~--------- 397 (1972)
+|+..|+.|++.+++. -++.|-.|+..++|.- +.. ++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3788999999999999 4567888988888876 222 58999999999999999998751
Q ss_pred ----C---CCh----HhHH----HHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhcCCChH
Q 000167 398 ----C---LNL----VDVV----EDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (1972)
Q Consensus 398 ----~---~~l----~~il----~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~Ds~~~ 460 (1972)
. +++ ..++ ..+..+++ .+++.+-.++++.+..+++.++-..+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 122 2222 33455566 578889999999999999988766554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000167 461 VRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 461 VR~aA~~~l~~l~~~~g 477 (1972)
||.++.-|++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876544
No 73
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.04 E-value=0.045 Score=56.49 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=84.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---CC-ChH-hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CL-NLV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~---~~-~l~-~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1972)
.+++.+++.+.+.+..++..+..++..+.... .. -.. .+++.+...+.+.++.++..++..|..+....+. ...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HHH
Confidence 37888999999999999999999999887541 00 012 5788888999999999999999999998765432 222
Q ss_pred Hhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 441 ~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
... ..+++.+.+++++.+.++|..|..+|+.+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 223 448999999999999999999999998764
No 74
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.96 E-value=0.01 Score=46.22 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000167 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 446 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
++|.+.++++|.+++||.+|..+++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 75
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=3.3 Score=54.62 Aligned_cols=250 Identities=17% Similarity=0.220 Sum_probs=130.9
Q ss_pred hCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHH
Q 000167 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807 (1972)
Q Consensus 728 ~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~ 807 (1972)
++.+|-+|..++.+...++..-.- -+..++....++ |.+.+.+|--++..++.+|-.. +++..+++.++-|.+..
T Consensus 152 ~~~~~~irKKA~Lca~r~irK~P~---l~e~f~~~~~~l-L~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV~ 226 (866)
T KOG1062|consen 152 QHRDPYIRKKAALCAVRFIRKVPD---LVEHFVIAFRKL-LCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLVK 226 (866)
T ss_pred hCCCHHHHHHHHHHHHHHHHcCch---HHHHhhHHHHHH-HhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 455666666666555555542110 022344445556 7777777777777777777643 44445566676666666
Q ss_pred HHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHc--c
Q 000167 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA--N 885 (1972)
Q Consensus 808 ~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a--~ 885 (1972)
.|..-.... + .|.-. ..|..|.+=.+.| . -++.-++..+-..-...-+-|.+++... +
T Consensus 227 iLk~l~~~~-y----speyd----------v~gi~dPFLQi~i----L-rlLriLGq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 227 ILKQLTNSG-Y----SPEYD----------VHGISDPFLQIRI----L-RLLRILGQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred HHHHHhcCC-C----CCccC----------ccCCCchHHHHHH----H-HHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence 665543221 0 00000 0000111000000 0 1112222221111111112233333211 1
Q ss_pred ccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHcChh--------------hH-hhhhhHHHHHHHHhCCCc
Q 000167 886 KRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPA--------------VE-KSSKGVLSDILKCLGDNK 949 (1972)
Q Consensus 886 ~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~alg~~--------------~~-~~~~~llp~ll~~L~D~k 949 (1972)
+.+.. .=|..+....+ =++|..++..|+++|+.+...-..+ .+ ..+..-=..|++||+|..
T Consensus 287 kN~Gn---AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 287 KNAGN---AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD 363 (866)
T ss_pred ccchh---HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc
Confidence 11111 11222222222 2345555666666666554221111 11 122333467899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000167 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1972)
Q Consensus 950 ~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~ 1007 (1972)
..+|.-|.+-+.+++..-++..++..+...|... .++.|.++...+....+...+.
T Consensus 364 ~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNESNVRVMVKELLEFLESS--DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999865 5788999988888777776553
No 76
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.39 Score=61.26 Aligned_cols=307 Identities=16% Similarity=0.154 Sum_probs=178.2
Q ss_pred hhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC--h
Q 000167 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--K 436 (1972)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~--~ 436 (1972)
.....+.+...+...+.+....||.+|.++|-++-.. ..+.. +.......|.+.+-.||.++++.+...-..++ .
T Consensus 192 ~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 192 LTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred ccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3333455556688889999999999999999988763 44443 45666678889999999999888876555553 1
Q ss_pred h---HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCC
Q 000167 437 A---AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSS 513 (1972)
Q Consensus 437 ~---~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~ 513 (1972)
. .=.++.+...-.++.++.|..-.||-.|+++||.|..+-.+ .+. ..||..-+..++.- +..
T Consensus 270 e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee-~i~---QTLdKKlms~lRRk--r~a--------- 334 (823)
T KOG2259|consen 270 ERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE-IIQ---QTLDKKLMSRLRRK--RTA--------- 334 (823)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH-HHH---HHHHHHHhhhhhhh--hhc---------
Confidence 1 11256677788889999999999999999999988765443 222 33443222111110 000
Q ss_pred CccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 000167 514 ARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593 (1972)
Q Consensus 514 ~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee 593 (1972)
+++|..-- ++|.-+ ++++-. .|+ +.|+
T Consensus 335 ------------------------------hkrpk~l~---------s~GewS------sGk~~~---adv-----psee 361 (823)
T KOG2259|consen 335 ------------------------------HKRPKALY---------SSGEWS------SGKEWN---ADV-----PSEE 361 (823)
T ss_pred ------------------------------ccchHHHH---------hcCCcc------cCcccc---ccC-----chhh
Confidence 00000000 000000 000000 000 1122
Q ss_pred HHHHhhccCc----HHHHHhhhcCChHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHH
Q 000167 594 IESRLGSLIP----ADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668 (1972)
Q Consensus 594 ~e~~~~~ll~----~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~-~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~ 668 (1972)
.++...++++ ..++.+|.+.=...|.+|+..|..+..+- +-.....+.|+++ |+|-.-.|..+++..|.
T Consensus 362 ~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM------fNDE~~~VRL~ai~aL~ 435 (823)
T KOG2259|consen 362 DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM------FNDEIEVVRLKAIFALT 435 (823)
T ss_pred ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH------hccHHHHHHHHHHHHHH
Confidence 2222223443 45567777778889999999999887662 2222334555655 46777889999999999
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHH--HhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHH
Q 000167 669 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTF--SEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1972)
Q Consensus 669 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l--~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i 746 (1972)
.++.+ ..+.+..+..++..|.|..- ++|+...+.|... ......+..+..+++.+ .|=|+-+-+.+..+..+-
T Consensus 436 ~Is~~-l~i~eeql~~il~~L~D~s~--dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~iG 510 (823)
T KOG2259|consen 436 MISVH-LAIREEQLRQILESLEDRSV--DVREALRELLKNARVSDLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRIG 510 (823)
T ss_pred HHHHH-heecHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHHh
Confidence 88886 45556666655555555433 4566665544421 11112233444444443 245666666665554443
Q ss_pred H
Q 000167 747 E 747 (1972)
Q Consensus 747 ~ 747 (1972)
+
T Consensus 511 q 511 (823)
T KOG2259|consen 511 Q 511 (823)
T ss_pred c
Confidence 3
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.74 Score=59.47 Aligned_cols=180 Identities=15% Similarity=0.183 Sum_probs=107.1
Q ss_pred ccHHHHHhcC--CCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-hHHHHHHHHHHHHHHHHHcC-hh
Q 000167 854 FTPTLVKSLE--SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMG-PA 929 (1972)
Q Consensus 854 l~~~ll~~l~--d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds-N~~V~~~Al~~l~~La~alg-~~ 929 (1972)
|.|.|++.+. +.||- +-.+-++.. +-..+.|.....|+..|...+... ...+.-++++++-......| ++
T Consensus 219 LAP~ffkllttSsNNWm-----LIKiiKLF~-aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWV-----LIKLLKLFA-ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred ccHHHHHHHhccCCCee-----hHHHHHHHh-hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 5578888764 44897 223333332 234566776567888888877443 33445555555433311122 23
Q ss_pred hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000167 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~ 1007 (1972)
-...+...+..+-..+-|+.++.+--+..|+..+...-+ +....+.+..+|.+. .+..|..+|..|-..+. .
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVs----k 366 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVS----K 366 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhh----h
Confidence 344455666666677788999999888888888776533 344455788888776 46678888887766554 2
Q ss_pred CChhhhHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHcCh
Q 000167 1008 PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~-dVR~aA~~~l~~l~~~~G~ 1045 (1972)
..+..+++-+...+.+..+ ..|..-..-+-.++..-.|
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 2455666667776666555 5555443333334433333
No 78
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.70 E-value=0.02 Score=59.20 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=82.6
Q ss_pred cHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~-~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
-+.+++.+.+.+|..|..++..+..+.... ........ .++++.|.+.|.|.|..++..|+.+++.|+..-......+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 346777888889999999999999987531 11111111 3677888888899999999999999999987543333333
Q ss_pred hh-hHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000167 934 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1972)
Q Consensus 934 ~~-~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~ 964 (1972)
.. .+++.+++.+.+.+..++..+..++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 48999999999999999999998888764
No 79
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.66 E-value=0.15 Score=62.34 Aligned_cols=294 Identities=19% Similarity=0.194 Sum_probs=149.0
Q ss_pred hhcCCChHHHHHHHHHHHHHhhccCCC-----------CchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000167 19 RLLHKNWKVRNEANIDLAALCDSITDP-----------KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (1972)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~d~-----------~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~ 87 (1972)
++.|-.-|.|..|+--+....+.++.. +.|+.. -..++.-.++|.|+.+.--||+.+.+++..... |
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g-~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-f 81 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELG-SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-F 81 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCC-CceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-H
Confidence 456777899999999888877654211 001110 012333468999999999999999988876532 2
Q ss_pred hhhhHHHHHHHHHhhcCCChhHHH------HHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC
Q 000167 88 GRYAKEVCDAIAAKCLTGRPKTVE------KAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA 161 (1972)
Q Consensus 88 ~~~~~~v~~~LveK~l~~k~~~k~------~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~ 161 (1972)
-....+.- +-.|+ |=..- .+-.|++...|.| -.|.++..|+.+|..++.+-..
T Consensus 82 ls~a~~~~----~~~ft--pf~v~~a~si~~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~ 140 (728)
T KOG4535|consen 82 LSVAEDTS----DHAFT--PFSVMIACSIRELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPY 140 (728)
T ss_pred HHHHhccC----CcCCC--chHHHHHHHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCch
Confidence 11110000 00000 10011 1223333333332 3566778888888888876433
Q ss_pred CccC---hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHH--hcc-CCCCCCc
Q 000167 162 KIIP---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELV--NVS-GTARPTR 235 (1972)
Q Consensus 162 ~~~~---~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~--k~~-~~~~P~R 235 (1972)
..+. +-.+.-.+.++..|+|++||-.+..+++.|..--. -++.++. .|..... +.. .-..|..
T Consensus 141 ~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~----------~~pei~~-~~~~~~s~~n~~~~h~s~~~ 209 (728)
T KOG4535|consen 141 DRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHA----------PLPEVQL-LLQQPCSSSNSATPHLSPPD 209 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCC----------CCHHHHH-HhcCCCccccccCCCCCChH
Confidence 3222 23577889999999999999998877665542211 1222221 1100000 000 0000100
Q ss_pred chhhhhhHhhhhhccccCCCCCCCCCC--CCCCCCCCCCCCCCCcccccccCcccchhh------hhcc--CChHHHHHH
Q 000167 236 KIRAEQDKELGQELISEDVGPGPSEES--TADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKA--TKWSERKDA 305 (1972)
Q Consensus 236 ~~rs~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~------~l~s--~kWkeR~ea 305 (1972)
.. ++.. ++++.+. .+.+.....+--++.++--..-+++.+-+. .+++ .---.|.|+
T Consensus 210 ~~-----~~l~---------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~ 275 (728)
T KOG4535|consen 210 WW-----KKLP---------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEA 275 (728)
T ss_pred HH-----HhcC---------CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHH
Confidence 00 0000 0000000 000011111222222221111122222111 1111 122368888
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhch
Q 000167 306 VAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360 (1972)
Q Consensus 306 L~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f 360 (1972)
++-|..++..-.+....+.++.+.+.+.+.|.-..+-.-+..|+..+..++....
T Consensus 276 ~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~ 330 (728)
T KOG4535|consen 276 LQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQY 330 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhc
Confidence 8888777643333334456777888888889988899999999999999888443
No 80
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.61 E-value=0.35 Score=59.24 Aligned_cols=185 Identities=17% Similarity=0.134 Sum_probs=120.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCC---CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcC--hhhH
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQP---AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVE 931 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~---~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg--~~~~ 931 (1972)
+.+..+.+++-+.|.+||+.+..++.. ..... ..+..|+..+.+.++-....=...|+++++.++-.+| .+-+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~--~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS--RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 567778999999999999999999974 12211 1246788888887765555567788999999999987 5667
Q ss_pred hhhhhHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC--chh------hHHHHHHHH--hc-CC-------CChhHHH
Q 000167 932 KSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH--LDK------MVPYVTTAL--TD-AK-------LGAEGRK 991 (1972)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~--~Vr~Aa~~aL~~i~~~~~--l~~------ll~~l~~~L--~~-~~-------~~~~~R~ 991 (1972)
...+.+.|.+...+.|... .+|.++..||..+.-.++ .+. .+..++... +. ++ .++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 7888899999998888654 467787777775544433 222 233232222 21 11 0123443
Q ss_pred HH-HHHHHHHhccCCCC--CC-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 992 DL-FDWLSKQLTGLSGF--PD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 992 ~~-l~~L~~~l~~~~~~--~~-~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
.+ -.| .-++...+.. .. +...+..+...|+..+.+||.+|-+++..++....
T Consensus 205 aAL~aW-~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAW-ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 33 334 2233333321 12 23334448888999999999999999998877655
No 81
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.22 Score=61.92 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=134.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHccccCCC-CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHH
Q 000167 860 KSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (1972)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~-~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (1972)
....+..|+.|....--+.++... +.+.. ..+++++..|..+..|++..++..|+.+|+.++..+......|...++
T Consensus 224 ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~l 301 (533)
T KOG2032|consen 224 SSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQL 301 (533)
T ss_pred cccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHH
Confidence 445667899999888888887752 33332 236899999999999999999999999999999998888999999999
Q ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHHH-------HHHHhcCCCChhHHHHHHHHHHHHhccCCC--CC
Q 000167 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYV-------TTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FP 1008 (1972)
Q Consensus 939 p~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l-------~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--~~ 1008 (1972)
-.++..|-| .+..|.-.+..||..+.+......+-+++ -..+.+. +++.|...+-.+.....-.+. ..
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~ 379 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEE 379 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchh
Confidence 888877755 55778888889998888877544433322 2233333 577887766544332221111 11
Q ss_pred C----hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000167 1009 D----AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1972)
Q Consensus 1009 ~----~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1972)
. +..-..|+.-.|+|+++-|-.|.+..+....-.++-+....+++
T Consensus 380 ~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 380 FFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred hhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1 23344567888999999998888887776666666665555554
No 82
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.42 E-value=21 Score=50.70 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=90.0
Q ss_pred chhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000167 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1972)
Q Consensus 359 ~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (1972)
.|.+-...++.-|+--+++....+|.-|..||..++... ...-.++...+..-+.+....||.+++..+.+++-..+.
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 344444555666777788999999999999999998761 122345666666777788899999999999998876543
Q ss_pred hHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 437 ~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
+...+-..+...+.|+.-.||+.+.+-+..++.-.+.
T Consensus 889 -----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 889 -----LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred -----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 2366677889999999999999999999999877664
No 83
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.34 E-value=6.2 Score=49.89 Aligned_cols=313 Identities=16% Similarity=0.205 Sum_probs=184.2
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHhc----CCCCccc-hHHHHHHHHHHHHHHHHHc---
Q 000167 609 QLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAATA--- 674 (1972)
Q Consensus 609 ~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~~----~p~~~Ds-N~qV~~~~Le~l~~l~~~~--- 674 (1972)
+|.+.+--.|.+||..|...++..+... ...+.+.+++.. .+.=++. +..+..+++.++..++...
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 3566777889999999999988744321 123444444432 1222333 6678888999998887531
Q ss_pred CCCchhhHHHHHHHHHhhhcchh-hhHHHHHHHHHHHh-hcChhHH----HHHHHHhh---hh-CCChHHHHHHHHHHHH
Q 000167 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIM---KD-HKNPKVLSEGILWMVS 744 (1972)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgd~K-~r~~a~~~L~~l~e-~~~~~~v----l~~l~~~l---~~-~KnpKv~~e~l~~L~~ 744 (1972)
..++......++...++.+.++. .|..+...|..+.+ .+++.++ ...++..+ .+ -++.-+..|.+..+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 34555566668888888888865 46666666666654 5555432 23333322 22 3456678899999999
Q ss_pred HHHHhCCC-CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCC
Q 000167 745 AVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1972)
Q Consensus 745 ~i~~fG~~-~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~ 823 (1972)
++..|... .-+...-++.+... +-++...+|..|+.+...+...+|+.- .+-+.+.+.++..-.
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~----- 225 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLE----- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhccccc-----
Confidence 99877542 11222344444443 678899999999999988888887531 111222222221100
Q ss_pred CCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCC-CCHHHHHHHHH---HHHHHHHHccccCCC-CChhhHHH
Q 000167 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIE---AVNKILEEANKRIQP-AGTGELFG 898 (1972)
Q Consensus 824 p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d-~~Wk~R~eale---~l~~ll~~a~~~I~~-~~~~eL~~ 898 (1972)
+. .+...+.+.+.+.+.+ ++.+ .+++ .+-.++. +..+.. ..+.+.+.
T Consensus 226 ----------------------~~-~~~~~~~~~L~~mi~~~~~~~---~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~ 277 (372)
T PF12231_consen 226 ----------------------NG-KLIQLYCERLKEMIKSKDEYK---LAMQIWSVVILLLG--SSRLDSWEHLNEWLK 277 (372)
T ss_pred ----------------------cc-cHHHHHHHHHHHHHhCcCCcc---hHHHHHHHHHHHhC--CchhhccHhHhHHHH
Confidence 00 0001122223333333 2211 1122 2223331 122222 23578888
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHcChh---hHhhhhhHHHHHHHHhCCCc-----HHHHHHHHHHHHHHH
Q 000167 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDNK-----KHMRECTLTVLDAWL 964 (1972)
Q Consensus 899 ~L~~~L~DsN~~V~~~Al~~l~~La~alg~~---~~~~~~~llp~ll~~L~D~k-----~~Vr~Aa~~aL~~i~ 964 (1972)
.....+++++..++..|+.+...+.-.+..+ ..+.++.+..++...+.-.+ ..++.++..++..+.
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 8888999999999999999999999877654 34667778888877775322 256777766665443
No 84
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.58 Score=58.34 Aligned_cols=211 Identities=16% Similarity=0.145 Sum_probs=138.7
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
.+.+.+.+.+|++|...+--+..+...+.+.. +..++++..+.....|++..++..||.+|+.++.++..+.-.|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 34455788999999988877777776554543 67888999999999999999999999999999999877777788888
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHh-cCCChHh----HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---H
Q 000167 368 LPVLLEKLKE-KKPTVAESLTQTLQAMHKA-GCLNLVD----VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---A 438 (1972)
Q Consensus 368 lp~LL~klkd-kk~~V~~aa~~aL~al~~~-~~~~l~~----il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---~ 438 (1972)
+-.|+-.+-| -+..|.-.+..||..+... ....+.. +.-.+-..+++-++++|..+...+..+..-.+.. .
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 8887777644 3456666666777766654 1122222 2233345566889999999888888776654432 2
Q ss_pred HHH-hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHH
Q 000167 439 VLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1972)
Q Consensus 439 l~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~ 500 (1972)
+.. ..+.+.| +.-.++|++|.|-.|.+..+-+..--++-+....+++..-+..+..+.+.+
T Consensus 381 Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fy 442 (533)
T KOG2032|consen 381 FTEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFY 442 (533)
T ss_pred hHHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHH
Confidence 211 1123223 233479999999777776665544444434455555533233333444443
No 85
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.24 E-value=0.1 Score=50.97 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=67.0
Q ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHH
Q 000167 938 LSDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1972)
Q Consensus 938 lp~ll~~L-~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (1972)
+|.+++.| .|..+.||..+..+|. ..+-..++|.+...+.++ ++.+|..++..|... .....+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i--------~~~~~~~~ 66 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDE--DPMVRRAAARALGRI--------GDPEAIPA 66 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSS--SHHHHHHHHHHHHCC--------HHHHTHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHh--------CCHHHHHH
Confidence 57888888 9999999999988888 445567899999999876 799999999998742 12345555
Q ss_pred HHhhcCC-CCHHHHHHHHHHHH
Q 000167 1017 ASIAMTD-KSSDVRKAAEACIV 1037 (1972)
Q Consensus 1017 l~~~L~D-~~~dVR~aA~~~l~ 1037 (1972)
+...+.| .+..||.+|..+|+
T Consensus 67 L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 67 LIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHhhcC
Confidence 7787755 56678999988874
No 86
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=5.8 Score=52.36 Aligned_cols=52 Identities=15% Similarity=0.005 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCChhhhH-HHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000167 986 GAEGRKDLFDWLSKQLTGLSGFPDAAHLL-KPASIAMTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 986 ~~~~R~~~l~~L~~~l~~~~~~~~~~~ll-~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
|..+|.++...|+.+.... ..+.+-+ .-+..|++|++.+||+.|..++..+-
T Consensus 479 n~ivRaaAv~alaKfg~~~---~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQD---VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhHHHHHHHHHHHhcCC---CCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3557888888887655211 1223333 33677999999999999999988776
No 87
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.83 E-value=22 Score=47.87 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCC
Q 000167 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLG 986 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~ 986 (1972)
.|+..++-+++.||-+-+ ..++.++|.+.+-|.-+. ..||.-..-++..++.+.+ .+..+|.|...|.++ +
T Consensus 946 ~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp--~ 1019 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP--S 1019 (1529)
T ss_pred HHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--h
Confidence 466778888888887654 556777888888776444 4589888889998888875 689999999999988 6
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCh-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 987 AEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 987 ~~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
+.+|..++..|++.++.--. .+ -.+..-++..+-|.+.+||.-|..|+..+...-.
T Consensus 1020 ~iVRrqt~ilL~rLLq~~~v--Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQFGIV--KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred HHHHHHHHHHHHHHHhhhhh--hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence 89999999999988763211 11 1233446677899999999999999998886543
No 88
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.71 E-value=0.41 Score=61.56 Aligned_cols=207 Identities=16% Similarity=0.186 Sum_probs=133.2
Q ss_pred cccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh
Q 000167 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1972)
Q Consensus 849 dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~ 928 (1972)
|+...+---++...++++-++|...++-+..++. .+..|....|..|...|..|+.|.-++|+.+|+.++..+=..-+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 4444444466788899999999999999988886 346676667888999999999999999999999988876421111
Q ss_pred hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC
Q 000167 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~ 1008 (1972)
+-.+ +..++-.+++ .|..+.||.+|..++.- -...+|.|.+--.+- +...|.-+...+...+ .... .
T Consensus 160 ee~~-v~n~l~~liq--nDpS~EVRRaaLsnI~v------dnsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r~-l 226 (892)
T KOG2025|consen 160 EECP-VVNLLKDLIQ--NDPSDEVRRAALSNISV------DNSTLPCIVERARDV--SGANRRLVYERCLPKI-DLRS-L 226 (892)
T ss_pred Cccc-HHHHHHHHHh--cCCcHHHHHHHHHhhcc------CcccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhhh-h
Confidence 1111 2233333333 79999999998665521 123456666655543 4566777766665444 1111 1
Q ss_pred ChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH-----HHHHHHHHHhh
Q 000167 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP-----ALALILERIKL 1069 (1972)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~-----~~~~I~~~l~k 1069 (1972)
.....+.-+-..|+|+.-+||.+++.++..=.-.+....+...+..|+.+ ..+.|++.++.
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 22233333566899999999999998886422223333456677777643 34455555543
No 89
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.64 E-value=0.99 Score=54.90 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHccccC--CCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHcCh------------
Q 000167 864 SPDWKVRLESIEAVNKILEEANKRI--QPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGP------------ 928 (1972)
Q Consensus 864 d~~Wk~R~eale~l~~ll~~a~~~I--~~~~~~eL~~~L~~~L~D-sN~~V~~~Al~~l~~La~alg~------------ 928 (1972)
.++|..-..++.++.+.+...+... -|.- ..+.+.|.+.|+- .-..|-+.||++.+.|.+.+|+
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k-~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHK-LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 4689999999999999998211111 2221 4456666666643 3455777777777777777665
Q ss_pred ------------------------------hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Q 000167 929 ------------------------------AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTT 978 (1972)
Q Consensus 929 ------------------------------~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~ 978 (1972)
.+.+.++.++..++-.+-|....+-+.+...++.+...++-+-+...++.
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl 180 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWL 180 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 33344455555555666677777777788888888888877777777777
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhccCC------C--------CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 979 ALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 979 ~L~~~~~~~~~R~~~l~~L~~~l~~~~------~--------~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
++.+ +|..|..++.|+.+.+.... . .++..-++..+..|++|.+-=|+..+-..| ..++.
T Consensus 181 ~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlL---l~~~P 254 (307)
T PF04118_consen 181 CIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLL---LSHFP 254 (307)
T ss_pred HHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHH---HHhCC
Confidence 7764 57899999999999998766 1 122233455688899999988887765444 55554
No 90
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.63 E-value=0.23 Score=67.19 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCCh
Q 000167 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGA 987 (1972)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~~~~~ 987 (1972)
-....+.....++..||..+.+ +-..+|.++.++......+|.++..|+..+..... ...++..+...+.+. ..
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~ 868 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DK 868 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hh
Confidence 4455677777888889988888 78899999999999999999999999999998764 233444444444421 11
Q ss_pred hHHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhH
Q 000167 988 EGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1972)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~ 1047 (1972)
..|......+-.++..... .+...-+++|++.++.|....||.+|.+++..+...++.+.
T Consensus 869 ~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 869 FVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred HhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccccc
Confidence 2333333333233332221 22333456779999999999999999999999999887654
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.58 E-value=0.042 Score=48.87 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000167 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i 963 (1972)
.|+..|+.+|+.++...+..+.+|...++|.++..|.|.+..||.+|..||..+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 478889999999888888889999999999999999999999999999888653
No 92
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.48 E-value=0.21 Score=67.58 Aligned_cols=200 Identities=17% Similarity=0.175 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 000167 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1972)
Q Consensus 300 keR~eaL~~L~~l~~--~~ki~~~~y~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (1972)
-+|+.|-..|.-+.. ++.+.. .|..+-+.|.+.+. |.|- -....+..+..++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl~~-klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAA-KLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHH-hcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 467777777766653 222221 23334444444444 3331 3444567777778788888888 77899999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcC-CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000167 375 LKEKKPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (1972)
Q Consensus 375 lkdkk~~V~~aa~~aL~al~~~~~-~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (1972)
.......||-++..|+..+++.+| .....+++.+..-++.-.--+|++...-+..++.......+.++..-+++.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 999999999999999999998622 1123455555555565555566666655555565544344567778899999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCchh-------HHHhHhhccHHHHHHHHHHHhc
Q 000167 454 LNDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAG 502 (1972)
Q Consensus 454 l~Ds~~~VR~aA~~~l~~l~~~~ge~~-------~~~~l~~Ld~~~~kkI~e~~~~ 502 (1972)
+.|....||++|.+++..+..+++.+. +...+-.....-++.|+..++.
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldp 960 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDP 960 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCc
Confidence 999999999999999999999988532 2223333333345555555543
No 93
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.41 E-value=0.21 Score=55.55 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=96.1
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHH-ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHH---HHHcChh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 929 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~-a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~L---a~alg~~ 929 (1972)
+.+-|++++...+.--|.=|.+.+.+++.. +..+|.|-. .+|+..|+..|+-.|..|...+|++|+.| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 446789999888888888888899998886 556677764 89999999999999999999999999999 6778999
Q ss_pred hHhhhhhHHHHHHH--H----hC-----CCcHHHHHHHHHHHHHHHHhcCchhh
Q 000167 930 VEKSSKGVLSDILK--C----LG-----DNKKHMRECTLTVLDAWLAAVHLDKM 972 (1972)
Q Consensus 930 ~~~~~~~llp~ll~--~----L~-----D~k~~Vr~Aa~~aL~~i~~~~~l~~l 972 (1972)
+-||.+.++|.+-- . ++ ..++.+++-...+|..+-.+.|-+.+
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 99999999998762 1 22 24467888888888888888775543
No 94
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.27 E-value=0.78 Score=57.10 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=108.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
..+++.+.+.+|-+|..+...+..+- -.+.+..|...+.|.+..|+..|..+++.+. .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 45777889999999999988754432 1678889999999999999999988666442 24
Q ss_pred hHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCC----------CChhHHHHHHHHHHHHhccC
Q 000167 936 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAK----------LGAEGRKDLFDWLSKQLTGL 1004 (1972)
Q Consensus 936 ~llp~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~----------~~~~~R~~~l~~L~~~l~~~ 1004 (1972)
..++.++..+. |.+..||..+..+|..+...-. +..+...+.+.. ....+|..+..-+...
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---- 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL---- 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----
Confidence 55677777777 8999999999999987755433 444555555431 0012444444444321
Q ss_pred CCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
.....+.++...+.|...+||.+|..++..+...
T Consensus 177 ----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 177 ----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred ----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 1233455578889999999999999999887655
No 95
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=12 Score=49.16 Aligned_cols=361 Identities=15% Similarity=0.180 Sum_probs=180.5
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (1972)
.++.+.|.+.+-+.|.+|+..+...+-++.......-.++|+.. | -.| +-.++.|-+.-.++++. .
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvl--p---s~~-~elKKLly~ywE~vPKt---~----- 88 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVL--P---SRN-HELKKLLYYYWELVPKT---D----- 88 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheee--c---cCc-hHHHHHHHHHHHHcccc---C-----
Confidence 35667899999999999999998777665443222222333321 1 111 11222222221222211 0
Q ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 000167 684 LCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1972)
Q Consensus 684 ~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l 763 (1972)
+|.|+... +..+| +++-+- .+|.|-=+|-.++.+|+.+=+. --+.++++.+
T Consensus 89 ----------~dgkl~~E----MILvc---------na~RkD-LQHPNEyiRG~TLRFLckLkE~-----ELlepl~p~I 139 (948)
T KOG1058|consen 89 ----------SDGKLLHE----MILVC---------NAYRKD-LQHPNEYIRGSTLRFLCKLKEP-----ELLEPLMPSI 139 (948)
T ss_pred ----------CCcccHHH----HHHHH---------HHHhhh-ccCchHhhcchhhhhhhhcCcH-----HHhhhhHHHH
Confidence 12222111 11122 222233 3677888888888888776431 1234788888
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHhhC------hh-HHhhhh-cccH-HHHHHHHHHHhcCCCCCCCCCCCcccccccc
Q 000167 764 KDTGLQSSAAATRNATIKLLGALHKFVG------PD-IKGFLA-DVKP-ALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1972)
Q Consensus 764 ~~~gL~~sn~~VR~aA~~ll~~Ly~~~G------~~-l~~~L~-~lkp-~ll~~Le~efek~~~~~~~~p~r~~r~~~~~ 834 (1972)
+.+ |+|.++-||..|+-++.++|+... |. +..||. +..| .....+---|.--+. .+....-+.
T Consensus 140 rac-leHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~E----rAl~Yl~~~--- 211 (948)
T KOG1058|consen 140 RAC-LEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPE----RALNYLLSN--- 211 (948)
T ss_pred HHH-HhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHH----HHHHHHHhh---
Confidence 885 999999999999999999997622 22 345552 2222 112222111100000 000000000
Q ss_pred CCCCCCCCCCCCcc-cccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCC----------CCChhhHH----HH
Q 000167 835 SSVSSGGSDGLPRE-DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ----------PAGTGELF----GG 899 (1972)
Q Consensus 835 ~s~~~~~~d~lprv-dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~----------~~~~~eL~----~~ 899 (1972)
-|.+|.. ++....-=+++.+.--.+-.+|..-++.+-.++...+.... .++ ...+ ..
T Consensus 212 -------idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~Aa~~ 283 (948)
T KOG1058|consen 212 -------IDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKAAAST 283 (948)
T ss_pred -------HhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHHHHHH
Confidence 0000000 00000001222221123333444444444444442111110 001 1111 11
Q ss_pred HHh---ccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 000167 900 LRG---RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYV 976 (1972)
Q Consensus 900 L~~---~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l 976 (1972)
+.. ...|.|.++ --+.-|..+. ..-+..+..++..++..|.-..-.||.-+..-.-.++.+-.+..++..+
T Consensus 284 ~i~l~~kesdnnvkl--Ivldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~L 357 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKL--IVLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFL 357 (948)
T ss_pred HHHHHHhccCcchhh--hhHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 222 224555433 2333344443 3345667888889999999999999999888888888877777777766
Q ss_pred HHHHhc-CC----CChhHHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCCHHHHHHH
Q 000167 977 TTALTD-AK----LGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAA 1032 (1972)
Q Consensus 977 ~~~L~~-~~----~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA 1032 (1972)
..-+.. .+ .+-.-|+.++..+..+--+.+ +...-+.| +...+.|.|+.--...
T Consensus 358 kke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~v 416 (948)
T KOG1058|consen 358 KKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDV 416 (948)
T ss_pred HHHHHhccccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHH
Confidence 655431 10 133447888888876654443 44555555 8888999988543333
No 96
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.89 E-value=1 Score=48.37 Aligned_cols=98 Identities=15% Similarity=0.310 Sum_probs=76.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||.. +-.+..++.. .+....+.+.+|++||+..|.+++..||.++..+++..|..|...+ +.|+.
T Consensus 14 l~~~dw~~----ileicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEA----IQAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHH----HHHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 35668884 3334444432 2333478999999999999999999999999999999999987543 56888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+++.+.. ....|++-+...+..|....+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 88888753 457899999999999998875
No 97
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.75 E-value=0.9 Score=49.16 Aligned_cols=98 Identities=20% Similarity=0.364 Sum_probs=77.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+...||..=.+ |...+.. . +....+.+.+|++||...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 13 l~~~dw~~il~----icD~I~~---~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGLILD----VCDKVKS---D--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHHHHH----HHHHHhc---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 34568974333 4444431 1 23348999999999999999999999999999999999998754 456888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+.+.+.+ ....|++-+...+..|.....
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 88888877 678899999999999998875
No 98
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.74 E-value=10 Score=45.52 Aligned_cols=187 Identities=11% Similarity=0.140 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc--cchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHH
Q 000167 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (1972)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~--DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~ 943 (1972)
+|..=..++..+..++. . +.+.+....+++..+.+... .--...+....+++..+...-......+...++..+++
T Consensus 53 D~~~~~~~l~gl~~L~~-~-~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 53 DHACVQPALKGLLALVK-M-KNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ 130 (262)
T ss_pred cHhhHHHHHHHHHHHHh-C-cCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH
Confidence 44444555667777763 2 44444444566666554332 22334567778888888776555555666778888888
Q ss_pred Hh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------c-CCCCh--hHHHHHHHHHHHHhccCCCCCChhh
Q 000167 944 CL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------D-AKLGA--EGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1972)
Q Consensus 944 ~L-~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~-------~-~~~~~--~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (1972)
.. |++.|.----+..-+..++....+..+.+.+.+.+. . +..+| -.|.++-.-|..++...+ .+.+
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~---~fa~ 207 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP---LFAP 207 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH---hhHH
Confidence 76 566666555566666677777777777777776664 1 11112 256777777777776433 4566
Q ss_pred hHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000167 1013 LLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (1972)
Q Consensus 1013 ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~ 1057 (1972)
.+.| ++..|....+.|+.-+-++|......+|.+.+.++...+=.
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 7777 88899999999999999999999999999999888765533
No 99
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.73 E-value=2.9 Score=53.22 Aligned_cols=146 Identities=16% Similarity=0.051 Sum_probs=89.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
+.++..+.+.+...|..++..+... . .+-...|...|+|.+..|+..|+.+++.+.. .
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r------~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~ 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAH------R------HDPGPALEAALTHEDALVRAAALRALGELPR----------R 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhh------c------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------c
Confidence 3566777888888998888555431 1 2233566677789999999999999988742 2
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000167 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (1972)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (1972)
..+|.+...+.|.++.||.+|..++..+ |-...++.+....... .+..+..+..++... + ....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~----~----~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA----G----GPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC----C----chhHHH
Confidence 3455566779999999999998888443 3344444444433322 122344444444311 1 123445
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 1016 PASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
.|...+.|.. ||..+..+++.+
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHHc
Confidence 5666666654 777777666643
No 100
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.59 E-value=1.2 Score=56.16 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=132.5
Q ss_pred ccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChh
Q 000167 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (1972)
Q Consensus 850 Is~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~ 929 (1972)
+...+-..++.+.++++-++|+..++-+.-+... -+.|....|.-|..-|..|+-|-.+.|+.+|+.++..+-.--+ +
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~-n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL-N 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC-C
Confidence 3333444677888999999999999988877753 3555555577788888899999999999999999888753333 3
Q ss_pred hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--
Q 000167 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-- 1007 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~-- 1007 (1972)
-+.+...++-.+++ .|....||.+|. ++-.+..- ..|.+.+-..+- +..-|..+...+ ++..+..
T Consensus 166 een~~~n~l~~~vq--nDPS~EVRr~al--lni~vdns----T~p~IlERarDv--~~anRr~vY~r~---Lp~iGd~~~ 232 (885)
T COG5218 166 EENRIVNLLKDIVQ--NDPSDEVRRLAL--LNISVDNS----TYPCILERARDV--SGANRRMVYERC---LPRIGDLKS 232 (885)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHHHH--HHeeeCCC----cchhHHHHhhhh--hHHHHHHHHHHH---hhhhcchhh
Confidence 23444444444443 688889999973 22222222 345555555433 344566555443 4443321
Q ss_pred CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000167 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (1972)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~ 1070 (1972)
......+.-+--.+.|+.-+||+++..++..-...--.-.+...+..|+-+..+.+..+|++.
T Consensus 233 lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 233 LSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ccccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 112223333445899999999999998886544433333455577888877777667777664
No 101
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.49 E-value=0.62 Score=59.15 Aligned_cols=118 Identities=20% Similarity=0.118 Sum_probs=85.0
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH
Q 000167 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1972)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il 405 (1972)
.+..|...+.|.+..|...+...++.+- -....+.|+..+++..+.|+.++..++...- .+-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 4778888888888888888877776542 2456677888888999999877765544321 1234
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 000167 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1972)
Q Consensus 406 ~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1972)
+.+...|++.+|.||.+++..|..+=. ...+|.|..++.|.+++||.+|..+++.
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 667777889999999988877765211 3345667788999999999999988843
No 102
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.40 E-value=0.36 Score=63.88 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhh----hchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000167 323 FTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLR----THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 323 y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~----~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (1972)
|+++++.|...+. +.-.+ +..+..|+..++ .-.-|....++|-||+.+.-....|+-++..++..+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~K-----~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQK-----HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHhhHHHHHHHhccCCccch-----hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 5566666666554 11111 233334444433 224578889999999999999999999999999887754
Q ss_pred -c---CCChHhHHHHHHHHh-hcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHH
Q 000167 397 -G---CLNLVDVVEDVKTSV-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1972)
Q Consensus 397 -~---~~~l~~il~~l~~~l-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 469 (1972)
. +.+++.++|.++.-- .++| -.||..+++.|..+.+..|...+..+-+.++.++.++|+|...-||..|..+=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1 245677888887533 3554 57999999999988777888888888899999999999999999999998875
Q ss_pred HHHH
Q 000167 470 AAIA 473 (1972)
Q Consensus 470 ~~l~ 473 (1972)
....
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5443
No 103
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.18 E-value=2.4 Score=56.82 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=112.0
Q ss_pred hccCChHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH
Q 000167 294 VKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~-l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (1972)
+.+++=++|++|++.+.+ +..+. |...++.-+.|-+.--|.-+....---+...++. -...+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~-----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~----~P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE-----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL----KPELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHH
Confidence 677788899999998765 44433 3566666555555544544444333333333322 1245778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HHHHHH
Q 000167 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (1972)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 451 (1972)
+-++|+++.+|-.|..++..+=.. -=++.+++.|..++.|+++.||..++-.+..+++.- +.. +... .+..+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-KDL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-Hhh---hhcccHHHHHH
Confidence 999999999998776665543221 113445667778888999999999999998887642 211 2233 566677
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHH
Q 000167 452 ECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 452 k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
..+.|++|.|-..|..+|..+..-
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 888999999988888888766543
No 104
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=23 Score=46.34 Aligned_cols=291 Identities=18% Similarity=0.168 Sum_probs=168.0
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChh
Q 000167 106 RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQN 183 (1972)
Q Consensus 106 k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~--~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~ 183 (1972)
++.-.-.|..|+-.+=+.+-.+.+.+.+-+-+- .--+=|+..+..+|-.+++.+ +..+++......+..+|+|.+=+
T Consensus 124 n~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~~~~~W~~riv~LL~D~~~g 202 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLVNPGEWAQRIVHLLDDQHMG 202 (938)
T ss_pred CcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC-ccccChhhHHHHHHHHhCccccc
Confidence 444455666665554444444444444443332 122334445555666666663 34667778888899999999999
Q ss_pred HHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCC---------CCC---CcchhhhhhHhhhhhccc
Q 000167 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT---------ARP---TRKIRAEQDKELGQELIS 251 (1972)
Q Consensus 184 VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~---------~~P---~R~~rs~~~~~~~~~a~~ 251 (1972)
|-.++.+++..|.++..+. .+. --+-++..|..-.-...-+ +.| +..+|--+.-
T Consensus 203 v~ta~~sLi~~lvk~~p~~-yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-------- 268 (938)
T KOG1077|consen 203 VVTAATSLIEALVKKNPES-YKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-------- 268 (938)
T ss_pred eeeehHHHHHHHHHcCCHH-Hhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC--------
Confidence 9999999998888887653 222 2233344443322111100 111 0011111110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCc----ccccccCcccchhhhhccCChHHHHH---HHHHHHHHhcCCCCCCCChH
Q 000167 252 EDVGPGPSEESTADVPPEIDEYELVDP----VDILTPLEKSGFWEGVKATKWSERKD---AVAELTKLASTKRIAPGDFT 324 (1972)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~iD~~dl~~~----vdIl~kl~~~~f~~~l~s~kWkeR~e---aL~~L~~l~~~~ki~~~~y~ 324 (1972)
+.. -|+-...-- ..||+|.. +--.++|-+.+-. .|-+...++.+-.-.+.-+.
T Consensus 269 ------p~~---------~D~~~r~~l~evl~~iLnk~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~ 328 (938)
T KOG1077|consen 269 ------PTP---------EDPSTRARLNEVLERILNKAQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS 328 (938)
T ss_pred ------CCC---------CCchHHHHHHHHHHHHHhccc-----cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH
Confidence 000 000000000 12233221 1113455554432 22233334433333334567
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchh-hhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChH
Q 000167 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLV 402 (1972)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klk-dkk~~V~~aa~~aL~al~~~~~~~l~ 402 (1972)
.-+..|.+.|.+...+++..|+..+..|+.. .|. ..++.-.-.++..++ |+...||.-+...|-+++.. ....
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak 403 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAK 403 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHH
Confidence 7778888888866666888887777777654 333 224445777888898 99999999998988888875 6778
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000167 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1972)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (1972)
.|+++++..+.+-.+++|++...=++.+.++...
T Consensus 404 ~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 404 QIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988777776666544
No 105
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.82 E-value=4.2 Score=48.41 Aligned_cols=302 Identities=16% Similarity=0.137 Sum_probs=166.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHH-ccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~-a~~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
|.+.+.+-+.+-.....|..+++++++. .++.|++-.-..+++-|...+ ...+..+.-+|.=+|..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4566777777888889999999999973 455666543234455555555 34455566677777778876543221111
Q ss_pred h-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-Cc------hhhHHHHHHHHhcCCCChhHH-HHHHHHHHHHhccC
Q 000167 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL------DKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGL 1004 (1972)
Q Consensus 934 ~-~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~-~l------~~ll~~l~~~L~~~~~~~~~R-~~~l~~L~~~l~~~ 1004 (1972)
+ -.-+|.+++.|.+....||+.+.=||..++.-. +. ...++.++..|.+.. +.+. ..-..|....+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence 1 135789999999999999999999988776432 11 113444555555432 2111 33455655444332
Q ss_pred CC-CCCh---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCC
Q 000167 1005 SG-FPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (1972)
Q Consensus 1005 ~~-~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~ 1080 (1972)
.. .+++ ...++.+.+.+.-.+++|-.-|.=++..+.. ...+.+... |+......+.+.+-....
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD-g~~E~i~av---ld~g~~~RLvElLs~~sa-------- 299 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD-GPNEKIQAV---LDVGIPGRLVELLSHESA-------- 299 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-CcHHHHHHH---HhcCCcHHHHHHhcCccc--------
Confidence 22 3333 3334447778888889887776655544432 112222211 111111223333211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcccccchhhhhhhhc---------cccCCCChHHhhhhhccccc
Q 000167 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL---------LNVKDSNKEDRERMVVRRFK 1151 (1972)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~k~~R~~~~~~k~~ 1151 (1972)
+ +.++..|+. +.+.+ +.+.+++.+ +.+..+.| +++|+.. =|.
T Consensus 300 -~------------iqtPalR~v--GNIVT------------G~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEa-CWT 350 (526)
T COG5064 300 -K------------IQTPALRSV--GNIVT------------GSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEA-CWT 350 (526)
T ss_pred -c------------ccCHHHHhh--cCeee------------cCccceehheecccHHHHHHHhcChh-hhhhhhh-hee
Confidence 0 011111110 00000 111222222 12223333 3554332 376
Q ss_pred ccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCc
Q 000167 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200 (1972)
Q Consensus 1152 f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~ 1200 (1972)
...-+.-.+|+.+.-|..-+-+-|+.+|-+.||+-+.+|.=.+......
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6655556677888888888888899999999999999988777766443
No 106
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.48 E-value=0.78 Score=49.51 Aligned_cols=106 Identities=29% Similarity=0.532 Sum_probs=75.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+.+.||.. +-.|.+.+.. . +..-.+.+.+|+++|...|.+++..||.++..++...|..|... .+.|+.
T Consensus 18 ~~~~Dw~~----~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HHH----HHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 45568863 2334445442 2 33348999999999999999999999999999999999998754 345777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHHH
Q 000167 940 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPYV 976 (1972)
Q Consensus 940 ~ll~~L~D~k~--~--Vr~Aa~~aL~~i~~~~~l~~ll~~l 976 (1972)
.+...+.++.. . |++.+...+..|....+-..-++.+
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i 129 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLI 129 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHH
Confidence 77776654333 2 8999999999999998543333333
No 107
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=34 Score=46.74 Aligned_cols=86 Identities=12% Similarity=0.039 Sum_probs=59.1
Q ss_pred hhccCChHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhch-hhhhhhH
Q 000167 293 GVKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF-SGSSRFL 367 (1972)
Q Consensus 293 ~l~s~kWkeR~eaL~~L~~---l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f-~~~~~~l 367 (1972)
-+++++-..|.+||+-+.- ++ ..+...-...+...+.+..++.+.|.-++..|+.||..++..-|.=. .++.+.+
T Consensus 811 ~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dv 890 (1014)
T KOG4524|consen 811 LLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDV 890 (1014)
T ss_pred HhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3688999999999998754 22 33322212234445666778889999999999999999998665322 2566777
Q ss_pred HHHHHHHhccC
Q 000167 368 LPVLLEKLKEK 378 (1972)
Q Consensus 368 lp~LL~klkdk 378 (1972)
+|.+=..|.+.
T Consensus 891 lP~l~~~~~~~ 901 (1014)
T KOG4524|consen 891 LPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHH
Confidence 77766555553
No 108
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.29 E-value=0.25 Score=38.41 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~ 967 (1972)
++|.+++.+.|..+.||.+|..|+..+++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999998764
No 109
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=92.28 E-value=1.7 Score=46.50 Aligned_cols=98 Identities=21% Similarity=0.417 Sum_probs=74.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||..=.+ +..++.. . +..-.+.+.+|+++|...|.+++..||.++..++...|..|...+ +.|+.
T Consensus 13 l~~~dw~~~l~----icD~i~~---~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWELILE----ICDLINS---T--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHHHHH----HHHHHhC---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 45668884333 4444431 2 233488999999999999999999999999999999999987543 45777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D~k~--~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+.++.. .|++.+...+..|.....
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 77776665432 399999999999998874
No 110
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.12 E-value=36 Score=44.89 Aligned_cols=198 Identities=15% Similarity=0.120 Sum_probs=118.4
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCcc--C-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChH
Q 000167 138 KNKVAKAVVPAIDVMFQALSEFGAKII--P-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRD 214 (1972)
Q Consensus 138 ~~KnpKv~~~~l~~l~~~l~~fG~~~~--~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~ 214 (1972)
-.|++-+..-.+..+..++..|...-. . +.+++.++....+..|++||-....++.-+.-..+. +-+.
T Consensus 52 vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e--idd~------- 122 (892)
T KOG2025|consen 52 VKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE--IDDD------- 122 (892)
T ss_pred eccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc--cCHH-------
Confidence 367777777777777777776654221 1 467889999999999999998876665444332221 1122
Q ss_pred HHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhh
Q 000167 215 TMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 294 (1972)
Q Consensus 215 ~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l 294 (1972)
+++++. ..+...+
T Consensus 123 ------------------------------------------------------------------vfn~l~-e~l~~Rl 135 (892)
T KOG2025|consen 123 ------------------------------------------------------------------VFNKLN-EKLLIRL 135 (892)
T ss_pred ------------------------------------------------------------------HHHHHH-HHHHHHH
Confidence 233332 2344444
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 000167 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (1972)
.|..-..|.+|+..|..+-..++ .+=-+++..++..|. |++.-|++.|+-+|.. -...+|-+++
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaLsnI~v------------dnsTlp~Ive 200 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAALSNISV------------DNSTLPCIVE 200 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhhcc------------CcccchhHHH
Confidence 55555568888888877754322 122357788888887 9999999998887743 2346788899
Q ss_pred HhccCcHHHHHHHHH-HHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHH
Q 000167 374 KLKEKKPTVAESLTQ-TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1972)
Q Consensus 374 klkdkk~~V~~aa~~-aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L 427 (1972)
+.+|=+..+|.-+-+ ++..+ ..-..+.+.-+-.+--|+.++.-.+|.++...+
T Consensus 201 RarDV~~anRrlvY~r~lpki-d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 201 RARDVSGANRRLVYERCLPKI-DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred HhhhhhHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 998888777653322 22222 110123333333333456555555555554443
No 111
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=4.6 Score=52.32 Aligned_cols=184 Identities=20% Similarity=0.237 Sum_probs=119.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 000167 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (1972)
Q Consensus 767 gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lp 846 (1972)
||+..|.+||..|..++..+|-..|++...- ..=..+++.|+
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e------~mD~i~~kQf~-------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHAE------EMDSIIQKQFE-------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccHH------HHHHHHHHHHH--------------------------------
Confidence 5999999999999999999998888875310 11112222222
Q ss_pred cccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHH
Q 000167 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASA 925 (1972)
Q Consensus 847 rvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L-~DsN~~V~~~Al~~l~~La~a 925 (1972)
.+++.++|.--.+|-+|++.+.++...-=.-|.++...+++.-+.+-+ .|+-..|+....+.|..|+-
T Consensus 224 ----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~- 292 (1005)
T KOG1949|consen 224 ----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD- 292 (1005)
T ss_pred ----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-
Confidence 344455666667899999999888864322334444455555555444 57777888888888887753
Q ss_pred cChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHH--HHHHHHhcCCCChhHHHHHHHHHHHHh
Q 000167 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1972)
Q Consensus 926 lg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~--~~l~~ll~--~l~~~L~~~~~~~~~R~~~l~~L~~~l 1001 (1972)
.+...+.++.++|.+=-.+.|+...||-|+...|-.+-.+ ...-.+++ .+...|...+ .+..|.-+.-.+..+|
T Consensus 293 -np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~-~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 293 -NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS-RPVSRRLVSLIFNSFL 370 (1005)
T ss_pred -CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc-cHHHHHHHHHHHHhhc
Confidence 3445577888999888999999999999998888766443 23333333 4555665443 2434433333333343
No 112
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.51 E-value=52 Score=42.29 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHh--hhch-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhhcCCh
Q 000167 344 EAIQAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVKNKVP 417 (1972)
Q Consensus 344 ~A~~~l~~La~~L--~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il---~~l~~~l~~Knp 417 (1972)
.|-.+|..|+..+ |+.| +..+..++=++++.|..|....|++.--|+..+-.. + ++++ ..|+.-++++.|
T Consensus 40 ~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~ 115 (898)
T COG5240 40 SARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVP 115 (898)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCc
Confidence 3445666666655 5678 678999999999999999999999999999888653 2 2322 344455567777
Q ss_pred -HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHH
Q 000167 418 -LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (1972)
Q Consensus 418 -~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 466 (1972)
.+|-.++.-|.+++..... ..+-..+..+.-|+.+.+|.+|.
T Consensus 116 ~~~kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal 158 (898)
T COG5240 116 DDVKPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL 158 (898)
T ss_pred cccccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH
Confidence 7888888888777764332 33445577888999999998874
No 113
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.37 E-value=2.2 Score=52.32 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhchhhhh--hhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhcCChhhH
Q 000167 71 KALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAV 145 (1972)
Q Consensus 71 ~~leal~~~v~~~~~~~~~--~~~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~--~~~v~~~L~~~~~~KnpKv~ 145 (1972)
+.|..+...+++...+... ....++..||-.++. ..+.+|+.|+.|+=.++=++. ....+..+...+..-.+.++
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 3566667777776533332 235788888888776 578999999999888876543 34556666777766688999
Q ss_pred HHHHHHHHHHHHHhCCCccCh----------hHHHHhhhhhhcCCChhHHHHHHHHHHHHH
Q 000167 146 VPAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1972)
Q Consensus 146 ~~~l~~l~~~l~~fG~~~~~~----------k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1972)
..|+.++.+++-.||...+.- ..+++.+.+.+.+.++.||..|...+..|+
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999876532 358999999999999999999988887776
No 114
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=91.01 E-value=3 Score=46.56 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=85.0
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCC----hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC--hhH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAA 438 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~----l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~--~~~ 438 (1972)
.++|.+++-+.|++..-+--|...+..++.. +... +.+++.-|..+|+++++.+...++..|..++...+ ...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 5677777888888777776666777777665 1111 34566666789999999999999999998865543 235
Q ss_pred HHHhhhhHHHHHHHHh--c---------CCChHHHHHHHHHHHHHHHHhCchhH
Q 000167 439 VLKVHKDYVPICMECL--N---------DGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1972)
Q Consensus 439 l~~~l~~l~p~l~k~l--~---------Ds~~~VR~aA~~~l~~l~~~~ge~~~ 481 (1972)
+.+++++++|.+--.. + .....+++--.++|..+-+.-|++++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 6788888888887322 2 35678999999999999988887654
No 115
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=67 Score=42.46 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=82.4
Q ss_pred ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000167 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 892 ~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
.+..-+..|.+.|.+...+++-.|++.+..|+.. +... ..++.-.-.++..|+ +..-.||+-|..-|-+|+..-..+
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~-davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak 403 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSI-DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK 403 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchH-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH
Confidence 3455666777777887788888888888888766 2222 233444677888888 888999999999999999998889
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
.++..+...|.+. .+..|.++.--++-.-++..+
T Consensus 404 ~IV~elLqYL~tA--d~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 404 QIVAELLQYLETA--DYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcC
Confidence 9999999999876 578898876555443344333
No 116
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.91 E-value=2 Score=45.94 Aligned_cols=100 Identities=21% Similarity=0.361 Sum_probs=76.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh-hh-hHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SK-GVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~-~llp 939 (1972)
+.+.||.. +-+|..++.. . +..-.+.+.+|+++|+..|.+++..||.++..++...|..|... .. .++-
T Consensus 13 ~~~~D~~~----il~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWAL----NLELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHH----HHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 35568884 3335555532 1 33348999999999999999999999999999999999988654 33 5777
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000167 940 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 940 ~ll~~L~D---~k~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
.+++.+.. ....|+.-+...+..|....+-.
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46679999999999999987643
No 117
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.88 E-value=45 Score=47.95 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchh------hhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHH
Q 000167 663 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK------TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (1972)
Q Consensus 663 ~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K------~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~ 736 (1972)
.++++..++....... ..+|..|+.+++.+. -+..|.+++..++.+..+. +.+.+...+...++ . ..
T Consensus 164 ~~~i~~~li~e~d~v~----~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~s-~-~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQ----SELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-IANFLNSCLTEYKS-R-QS 236 (1266)
T ss_pred HHHHHHHHHHhhccch----HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhccc-c-cc
Confidence 6666666665432222 345555566665542 2455555555555554432 22223232221111 1 11
Q ss_pred HHHHHHHHHHHHhCCCC-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhc
Q 000167 737 EGILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (1972)
Q Consensus 737 e~l~~L~~~i~~fG~~~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek 815 (1972)
-.-.-.+++|-+...-. --+-.+++.+..- |.+.+-.+|-.|..++|.|+...+.-+. + .
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------~ 297 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------T 297 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c--------------c
Confidence 11112233333221100 0133577777765 8899999999999999999854432110 0 0
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhh
Q 000167 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (1972)
Q Consensus 816 ~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~e 895 (1972)
..-+-..|+..+.|..-.+|.+.++....++.. ++.+... ..
T Consensus 298 -----------------------------------~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 298 -----------------------------------YDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred -----------------------------------chHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 001345788889999999999999998888763 2222221 34
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000167 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1972)
Q Consensus 896 L~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~ 966 (1972)
+..+|+.+.-|.+..++...+.....+ +.-.+ .+...++-.+.+.+.|++..||..|+..|..+.++
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~v---~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACDV---MKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEeeh---hHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 566777777777766654432221111 11111 23333777788899999999999999999999986
No 118
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.85 E-value=1.1 Score=59.46 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=111.0
Q ss_pred cccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHcccc-CCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChh
Q 000167 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (1972)
Q Consensus 851 s~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~-I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~ 929 (1972)
+..+.|.+.+.+....-.+|-.=+..+.-++..-.+. +.|. +..|++.|.+.|+=....|+..+++++..+....+.-
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~-~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ-FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc-hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 4445566666666555555656666777777632222 3344 5889999999987777778889999999999999988
Q ss_pred hHhhhhhHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 930 VEKSSKGVLSDILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k---~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
...|+..++|.++..-.|++ ..||..|.+||+++.+.++...+++.
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f------------------------------- 992 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF------------------------------- 992 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc-------------------------------
Confidence 99999999999999888777 67999999999998877664333221
Q ss_pred CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 1007 FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 1007 ~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
-...+..+.++|+|+..-||+.|..+=...
T Consensus 993 ---r~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 993 ---RPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred ---cHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 012344466778888888888887664443
No 119
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.78 E-value=3.7 Score=44.44 Aligned_cols=100 Identities=20% Similarity=0.359 Sum_probs=75.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+.+.+|..=.+ +..++.. . +....+.+.+|++||...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 17 l~~~dw~~ile----icD~In~--~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 17 LGEPDLASILE----ICDMIRS--K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred cCccCHHHHHH----HHHHHhC--C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 35568874333 4444432 1 22248999999999999999999999999999999999988753 345777
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000167 940 DILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 940 ~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
.+...+. ...+.|++-+...+..|.....-+
T Consensus 88 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 88 ELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7777665 456679999999999999887643
No 120
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=6.9 Score=47.78 Aligned_cols=175 Identities=20% Similarity=0.235 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHH---ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh-hHH
Q 000167 863 ESPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-GVL 938 (1972)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~---a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~-~ll 938 (1972)
.+.+-..|..|++.++.++.. |+..+. +|-+...|. .+++++..++..|..+|+..+..-.+.-+...+ ..+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~---~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS---LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh---ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 344677889999999999874 222222 244555555 889999999999999999988654443333333 267
Q ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHHHHhc--CchhhHH-----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCC-
Q 000167 939 SDILKCLG-DNKKHMRECTLTVLDAWLAAV--HLDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD- 1009 (1972)
Q Consensus 939 p~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~--~l~~ll~-----~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~- 1009 (1972)
+.++..|. |..-.+|..|.-|+..++++- |...+++ .|.++|+++..+...+.-++..+..++.......+
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 78887776 444568899999999999885 3455554 57888887534567777788888777766544222
Q ss_pred hhhhHHH--HHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1010 AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1010 ~~~ll~p--l~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
......+ +.....--+.+++.++..++-.+..
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 1122222 1222223344566666555444433
No 121
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.25 E-value=2.1 Score=48.10 Aligned_cols=133 Identities=21% Similarity=0.228 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHc-ChhhHhhhhhHHHHH-----------H-HHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000167 910 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI-----------L-KCLGDNKKHMRECTLTVLDAWLAAVH-------- 968 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~al-g~~~~~~~~~llp~l-----------l-~~L~D~k~~Vr~Aa~~aL~~i~~~~~-------- 968 (1972)
+|+..|+.+++.+++.. ++.|-.|-..|+|.- + -.+.|..+-||.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47889999999999995 556788888888755 3 34579999999999999999987642
Q ss_pred --------------chhhHH----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCCh-hhhHHHHHhhcCCCCH
Q 000167 969 --------------LDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDA-AHLLKPASIAMTDKSS 1026 (1972)
Q Consensus 969 --------------l~~ll~----~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~~~-~~ll~pl~~~L~D~~~ 1026 (1972)
+..++- .+..+|+.++ ++..-..+++-+...++..+- ..++ ...+..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 111111 2444555443 455666778888777776654 2333 3344446667788999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 000167 1027 DVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 1027 dVR~aA~~~l~~l~~~~ 1043 (1972)
+||-++.-||+.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999887543
No 122
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=89.99 E-value=3.7 Score=44.35 Aligned_cols=100 Identities=26% Similarity=0.436 Sum_probs=73.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~-DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (1972)
+...||..=.+ |...+.. ......+.+.+|++||. ..|.+++..||.++..+++..|..|...+ +.|+
T Consensus 14 l~~~dw~~ile----icD~In~-----~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNME----ICDIINE-----TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHH----HHHHHhC-----CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 45568985433 3334431 22234889999999997 46899999999999999999999987543 4677
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000167 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
.. +++.+.+ ....|++-+...+..|.....-+
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 76 6666653 33479999999999999887533
No 123
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=89.93 E-value=2.5 Score=43.89 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh--HHHHHHH-----H
Q 000167 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILK-----C 944 (1972)
Q Consensus 872 eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~-----~ 944 (1972)
..+..|..++.+ .+..+.+++.+|.+||.+.|..++..||.++..++...|..|..++.. ++-.++. .
T Consensus 19 ~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 19 PLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred HHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccc
Confidence 345555555532 133468999999999999999999999999999999999998876533 3333322 1
Q ss_pred h-CCCcHHHHHHHHHHHHHHH
Q 000167 945 L-GDNKKHMRECTLTVLDAWL 964 (1972)
Q Consensus 945 L-~D~k~~Vr~Aa~~aL~~i~ 964 (1972)
. .+....||+.+...+..|.
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHh
Confidence 1 2456789999999998885
No 124
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.89 E-value=5.5 Score=53.54 Aligned_cols=168 Identities=18% Similarity=0.130 Sum_probs=100.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHH-HHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~-~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (1972)
+.+++-+.|.+|+..+-..+..+ +++..++. .++... --|..+....--.+-..++. .+ .-+...+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~-~P---~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKL-KP---ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcc-CH---HHHHHHHHH
Confidence 67788889999999877666532 22344443 333333 33444444332222222221 11 445667789
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhh
Q 000167 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020 (1972)
Q Consensus 941 ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~ 1020 (1972)
+.+-++|.++.+|..|..++..+-..-=++.+++.+...+.++ ++.+|.++.-.+...+.--+..-.-.-.+..+...
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l 174 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKEL 174 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHH
Confidence 9999999999999999888876522111233444555556666 68999998888887764322110000022223445
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 000167 1021 MTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1021 L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
+.|.++.|-.+|..+|..+..-
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 175 VADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhCCCchHHHHHHHHHHHhchh
Confidence 6799999999998888777643
No 125
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.86 E-value=81 Score=41.72 Aligned_cols=96 Identities=17% Similarity=0.269 Sum_probs=73.7
Q ss_pred hhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhc-C-ChHHHHHHHHHHHHHHH
Q 000167 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKN-K-VPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 357 ~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~l~~-K-np~vR~~~l~~L~~~l~ 432 (1972)
...|++....++|++|.++......||..+.+.+..+... +...+.-=++.|+...++ . ++.+|..++.|+...+.
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 3568889999999999999999999999999999887755 112233334566665554 3 59999999999999999
Q ss_pred hcChhHHHHhhhhHHHHHHHHhcC
Q 000167 433 TSSKAAVLKVHKDYVPICMECLND 456 (1972)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~k~l~D 456 (1972)
+.+...- ..++|.+++++..
T Consensus 94 Rl~~~e~----~~llP~ll~~is~ 113 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISK 113 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhcc
Confidence 8876554 5677888888753
No 126
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.85 E-value=19 Score=48.35 Aligned_cols=237 Identities=17% Similarity=0.181 Sum_probs=139.4
Q ss_pred HHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCC-CCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhh
Q 000167 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (1972)
Q Consensus 719 l~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~-~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (1972)
++..+..+ .++-+-++..++..|..+++.-.. ..+....++..+.+. +.|.|+-|=-.|++.++.|...+..++
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 456677889999999999984322 123445678888888 999999999999996666654443332
Q ss_pred hhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHH
Q 000167 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (1972)
Q Consensus 798 L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l 877 (1972)
-|.+.+..+.+-.+.+ + |. +. ++. |.+
T Consensus 804 ----l~dL~e~Y~s~k~k~~----~--------------------d~-----~l-kVG-------------------Eai 830 (982)
T KOG4653|consen 804 ----LPDLSEEYLSEKKKLQ----T--------------------DY-----RL-KVG-------------------EAI 830 (982)
T ss_pred ----HHHHHHHHHhcccCCC----c--------------------cc-----ee-hHH-------------------HHH
Confidence 2223332222211110 0 00 00 011 223
Q ss_pred HHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh-CCCcHHHHHHH
Q 000167 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECT 956 (1972)
Q Consensus 878 ~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D~k~~Vr~Aa 956 (1972)
.+++..- ..+....++-|...+...+.|+....+..++..+|.++..+.-....++..++..++... .|....||.||
T Consensus 831 ~k~~qa~-Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 831 LKVAQAL-GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 3333211 112222235566667677778888889999999999998776444445556666665543 58889999999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000167 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1972)
Q Consensus 957 ~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1972)
...+......+| ..++|.+-..+.+. . ..+.+ + .-.|++..+|..|+.|+
T Consensus 910 v~li~~lL~~tg-~dlLpilr~~l~Dl-------------~--------------~tl~~-~-vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPILRLLLIDL-------------D--------------ETLLS-Y-VRQHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHH-------------H--------------HHHHH-H-HhcCchhHHHHHHHHHH
Confidence 999988888877 33444433333321 0 01111 1 11455666889999999
Q ss_pred HHHHHHcC
Q 000167 1037 VEILRAGG 1044 (1972)
Q Consensus 1037 ~~l~~~~G 1044 (1972)
..+-..+.
T Consensus 960 eei~a~l~ 967 (982)
T KOG4653|consen 960 EEIQAALE 967 (982)
T ss_pred HHHHHHHH
Confidence 87765443
No 127
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.28 E-value=27 Score=47.46 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=74.9
Q ss_pred HHHHHHHHHHc--ChhhHhhhh--hHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000167 916 LITLGAVASAM--GPAVEKSSK--GVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 983 (1972)
Q Consensus 916 l~~l~~La~al--g~~~~~~~~--~llp~ll~~L~D~k--~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~ 983 (1972)
++|+|.|+.-- +.++...+. .++|-+.+.|.... ..+.-.+...+.+++..-. -..+++.+.+.|..+
T Consensus 509 vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 509 VECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh
Confidence 34444444422 446777765 58888888886532 3455555556665553211 134667777888754
Q ss_pred CCChhHHHHHHHHHHHHhccCCCCCCh---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 984 KLGAEGRKDLFDWLSKQLTGLSGFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 984 ~~~~~~R~~~l~~L~~~l~~~~~~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1972)
..+-+.-..++-.+.+++.+-.+...+ .+...-++..++|+|.+||+.|-.||..++.+=
T Consensus 589 qeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 589 QEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred CchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 333333344444444444432221111 223334888999999999999999999888753
No 128
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.05 E-value=5.3 Score=48.96 Aligned_cols=125 Identities=15% Similarity=0.096 Sum_probs=90.9
Q ss_pred HHHHHHhhhchhhh--hhhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000167 350 GNLARGLRTHFSGS--SRFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (1972)
Q Consensus 350 ~~La~~L~~~f~~~--~~~llp~LL-~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~ 426 (1972)
..+-+.....+.+. ...++..++ -.+....+.||+.+..||.-+.-.........++.+...++.....+|..+++.
T Consensus 8 ~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~ 87 (298)
T PF12719_consen 8 QSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKA 87 (298)
T ss_pred HHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33333333344443 336666655 445777789999999999877654112234566777777777789999999999
Q ss_pred HHHHHHhcChhHHHHh--------hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 427 VTFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 427 L~~~l~~~~~~~l~~~--------l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
+..++-.++...+... ...+...+.+.+.+.++++|..|.+++..+.-
T Consensus 88 l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 88 LFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999998876554322 25788899999999999999999999998774
No 129
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=89.02 E-value=2.8 Score=46.37 Aligned_cols=146 Identities=12% Similarity=0.179 Sum_probs=91.7
Q ss_pred CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000167 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 397 (1972)
Q Consensus 321 ~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~--~~ 397 (1972)
.+|.+|++.|...++ +.+..++.++++++|.|+. .+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 468999999999998 7778999999999998863 45554332211111 110 01111111111111 10
Q ss_pred CCChHhH-----HHHHHHHhhcCC-hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 000167 398 CLNLVDV-----VEDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1972)
Q Consensus 398 ~~~l~~i-----l~~l~~~l~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1972)
..+.++. +..+..-|++++ ..-...++..+..++...+... .++++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1123333 344445555544 4455567777777776655544 57789999999999999999999998888888
Q ss_pred HHHHhC
Q 000167 472 IAKSVG 477 (1972)
Q Consensus 472 l~~~~g 477 (1972)
+...++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 877653
No 130
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.88 E-value=1.9 Score=46.63 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc---cChhHHHHhhhhhhc-CCChhHHHHHHHHHHHHHHhhC
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFD-HQDQNVRASSKGLTLELCRWIG 200 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~---~~~k~il~~l~~ll~-~~d~~VR~~a~~l~~ely~~lG 200 (1972)
++...+..|.+.+.++||+++.-+|..|-.++++=|... +.-+.|+..|.+++. +.+..||+....++.+-+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999877632 344778999999886 6788999999999888887776
Q ss_pred C
Q 000167 201 K 201 (1972)
Q Consensus 201 ~ 201 (1972)
.
T Consensus 118 ~ 118 (142)
T cd03569 118 N 118 (142)
T ss_pred C
Confidence 4
No 131
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.65 E-value=6.3 Score=42.73 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Q 000167 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~ 475 (1972)
..+..+.+..|..-++++||.+-..++..|..|+.+|+...... .-+.++..|.+.+.+ .+++||+...+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 35566777777778889999999999999999999998753322 247788889999988 8999999999999999888
Q ss_pred hCch
Q 000167 476 VGMR 479 (1972)
Q Consensus 476 ~ge~ 479 (1972)
++..
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8754
No 132
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=88.25 E-value=1.5 Score=57.18 Aligned_cols=185 Identities=18% Similarity=0.236 Sum_probs=128.2
Q ss_pred cccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChh
Q 000167 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (1972)
Q Consensus 851 s~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~-~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~ 929 (1972)
...+.+-+++.++..+-.+|.--|+.+.+.+. .+.+..+ ..+++.+...+.|.|..++.+++.++..|+..++..
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 33455677888899999999999998888875 3443322 568889999999999999999999999999999876
Q ss_pred hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 000167 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l---~~ll~-~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~ 1005 (1972)
..-..++..+-..-.|....+|.-..-|+..+..+... ..++. .+..+++++- .|.-..+++.+.+ ..+..
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~ 478 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYF 478 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--ccccc
Confidence 33345666666666788999999999999988877531 22333 4455677653 2333344444432 12222
Q ss_pred CCCChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 1006 GFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 1006 ~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
...++..-+.| +.....|.+..||..|..++..+....-
T Consensus 479 ~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 479 DQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred chhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 22233334444 5555689999999999988877665443
No 133
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.24 E-value=20 Score=51.37 Aligned_cols=257 Identities=10% Similarity=0.050 Sum_probs=138.1
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCc---------cccccccCC
Q 000167 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT---------VRASESTSS 836 (1972)
Q Consensus 766 ~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~---------~r~~~~~~s 836 (1972)
+ |.|.|..||--..-|+..+.+...|.. +|-...-..+.+.+.++|........|.-.|. ++..
T Consensus 58 ~-L~h~d~dvrllvacCvseilRi~aPea-Py~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~----- 130 (1266)
T KOG1525|consen 58 L-LKHKDKDVRLLVACCVSEILRIYAPEA-PYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFC----- 130 (1266)
T ss_pred H-hcCCCcChhHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHH-----
Confidence 5 899999999999999999999887653 22111122344555566665544322221111 0100
Q ss_pred CCCCCCCCCCcccccccccHHHHHhcCCC---CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHH
Q 000167 837 VSSGGSDGLPREDISGKFTPTLVKSLESP---DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (1972)
Q Consensus 837 ~~~~~~d~lprvdIs~~l~~~ll~~l~d~---~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~ 913 (1972)
-..+.....|+...+=.-|++-..+. +|-. -++-+..++.+. . +.-.+++..|..-|-..+.+...
T Consensus 131 ---l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~----d-~v~~e~L~~ll~~lv~~~~~~~~ 199 (1266)
T KOG1525|consen 131 ---LLMLLEDCQELVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEE----D-TVQSELLDVLLENLVKPGRDTIK 199 (1266)
T ss_pred ---heeeccchHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhh----c-cchHHHHHHHHHHhccCCCCccH
Confidence 00011111122111111122222111 3333 222223333221 1 11255666665555444455555
Q ss_pred HHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhHHH
Q 000167 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRK 991 (1972)
Q Consensus 914 ~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~~~~R~ 991 (1972)
.|..+-..+...++...++....++...+..-.-....++..-..-+-.+....+ +-.++|.|..-|... +-+.|.
T Consensus 200 ~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se--~~~~Rl 277 (1266)
T KOG1525|consen 200 EADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSE--QEEVRL 277 (1266)
T ss_pred HHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc--hHHHHH
Confidence 5655555555555555555555555444433332444455555555555544443 456777777777755 468999
Q ss_pred HHHHHHHHHhccCCC--CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 992 DLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 992 ~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
.+.+.+.+.|..... .....++....+..+.|.+.+||-++.++...+...
T Consensus 278 ~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 278 KAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 999999888875433 122455566677789999999999998887766543
No 134
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.15 E-value=14 Score=49.33 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=116.2
Q ss_pred ChHHHHHHHHHHHHHhc--CCC-CCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhh-hHHHHHH
Q 000167 298 KWSERKDAVAELTKLAS--TKR-IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 372 (1972)
Q Consensus 298 kWkeR~eaL~~L~~l~~--~~k-i~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~-~llp~LL 372 (1972)
+=..-.+|+.+|..++. +.. +..--...+++.|.++++ +.|.-+...||+|+.+|+..+.....-.++ ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 55566778888877542 222 222235689999999999 889999999999999999999877654433 4789999
Q ss_pred HHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhHHH-----HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000167 373 EKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVE-----DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1972)
Q Consensus 373 ~klkd-kk~~V~~aa~~aL~al~~~~~~~l~~il~-----~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1972)
+||-. .=-.|.|...+||..|-.. +..+|+. ..+..++==+-.+.+.++...+.|.....+..+ +++-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 98854 4456777777777777653 3333332 111222211223344455555666555554433 334667
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000167 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
+|.|...|.-.+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999988888888888888877765544
No 135
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.08 E-value=7.1 Score=46.49 Aligned_cols=175 Identities=18% Similarity=0.175 Sum_probs=109.4
Q ss_pred hhhcCCChhhh-hcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHh-hhcC-CcHHHHHHHHHHHHHHHHHhch
Q 000167 9 KEAKKLPWEDR-LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVAD-SNAPVQDKALDALIAYLKAADA 85 (1972)
Q Consensus 9 ~~~~~lpl~er-l~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k-~v~D-sN~~vqe~~leal~~~v~~~~~ 85 (1972)
.|+-.+|+... +..++-+.|..|...|...-.. .++......|...+-+ .+++ -|-.+|..||.+|..+--..
T Consensus 51 r~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-- 126 (254)
T PF04826_consen 51 RDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-- 126 (254)
T ss_pred HHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--
Confidence 45556666554 4468889998898888765322 2333344445544433 4443 48899999999998773111
Q ss_pred hhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh------hhHHHHHHHHhhcCCh-hhHHHHHHHHHHHHH
Q 000167 86 DAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV------DVFLDVMEKAIKNKVA-KAVVPAIDVMFQALS 157 (1972)
Q Consensus 86 ~~~~~~~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~------~~v~~~L~~~~~~Knp-Kv~~~~l~~l~~~l~ 157 (1972)
+.-......++.++. +|. +...+|..+..+++.+.+-... ..+...+..-|..+.+ .+...++.++..+-.
T Consensus 127 ~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 127 DYHHMLANYIPDLLS-LLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred chhhhHHhhHHHHHH-HHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 111112334555543 343 6788999999999988865321 1344455555666544 456777777777777
Q ss_pred HhCCCc--c---------------ChhHHHHhhhhhhcCCChhHHHHH
Q 000167 158 EFGAKI--I---------------PPKRILKMLPELFDHQDQNVRASS 188 (1972)
Q Consensus 158 ~fG~~~--~---------------~~k~il~~l~~ll~~~d~~VR~~a 188 (1972)
.++... . ..+.+-+.|..+..|+|+.||+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 206 NIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred hhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 766642 1 124477888899999999999863
No 136
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=87.78 E-value=1.3 Score=57.73 Aligned_cols=171 Identities=15% Similarity=0.124 Sum_probs=100.7
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 000167 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (1972)
|.+.+.-+.=.||.+-...|...+ +..+.++ ..+...|...+. |+...+..-.+.+-..+.. ++|-.
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~------~eyq~ 329 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE------EEYQV 329 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc------ccccc
Confidence 444555555555555444443322 1222222 234445544444 4333333332332222221 25778
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
-++|.|++.|+-....||--+..=+..++.+. ..--+.|+|.+..++.+.|+.+|..|+..+..++...++..+.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln--- 406 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN--- 406 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc---
Confidence 89999999999999999987777777777651 1123578999999999999999999999999888776655442
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
-+++..+.+.-.|.++..|....-|++.+
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeeccc
Confidence 23344444444455555554444444433
No 137
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.59 E-value=8.3 Score=49.10 Aligned_cols=196 Identities=17% Similarity=0.127 Sum_probs=127.5
Q ss_pred hhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHH
Q 000167 291 WEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (1972)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 369 (1972)
....++++-+.|+..+..|.-+.. ...|...-|..|...|.+++-|-.+.|+.+|..|+..+- ++..+=+.....++-
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q-e~~~neen~~~n~l~ 175 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ-EMELNEENRIVNLLK 175 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccCChHHHHHHHHH
Confidence 344588889999999998887775 334555667888888889999999999999999998876 333333444444554
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
.++. -|....||.++ |-.+... ..+.+- |++-..+-+...|.. +-.+|+.+.+.......-|.+. .
T Consensus 176 ~~vq--nDPS~EVRr~a---llni~vd-nsT~p~----IlERarDv~~anRr~---vY~r~Lp~iGd~~~lsi~kri~-l 241 (885)
T COG5218 176 DIVQ--NDPSDEVRRLA---LLNISVD-NSTYPC----ILERARDVSGANRRM---VYERCLPRIGDLKSLSIDKRIL-L 241 (885)
T ss_pred HHHh--cCcHHHHHHHH---HHHeeeC-CCcchh----HHHHhhhhhHHHHHH---HHHHHhhhhcchhhccccceeh-h
Confidence 4443 47777888754 3333221 133333 443334444445544 3456776664332222223333 6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHh
Q 000167 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1972)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~ 501 (1972)
+..+++|..-.||.++..++..-+...-+-.+-.+++.||-.+++-....++
T Consensus 242 ~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 242 MEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 7789999999999999999987776555544667888888776664444333
No 138
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=86.50 E-value=10 Score=45.37 Aligned_cols=305 Identities=14% Similarity=0.132 Sum_probs=161.4
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhc--cccchhH--HHHHHHHhcCCCCccchH--HHHHHHHHHHHHHHHHcCCC
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLDQSV--EILVRLVCMLPGWSEKNV--QVQQQVIEVINYLAATATKF 677 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~--~~~~~~~--~~lv~~L~~~p~~~DsN~--qV~~~~Le~l~~l~~~~~~~ 677 (1972)
+.+..+|.|.+-..-+.|+-++.+++... .+.+... .++.|+.. |-|.+. ...-.+-=++..++.-...-
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfve----fm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVE----FMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHH----HHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 67889999999999999999999998662 2232221 22333321 222211 11111111233333211111
Q ss_pred chhhH-HHHHHHHHhhhcch--hhhHHHHHHHHHHHhhcC--hhHH-----HHHHHHhhhhCC-ChHHHHHHHHHHHHHH
Q 000167 678 PKKCV-VLCLLGISERVADI--KTRAHAMKCLTTFSEAVG--PGFI-----FERLYKIMKDHK-NPKVLSEGILWMVSAV 746 (1972)
Q Consensus 678 ~~~~~-~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~--~~~v-----l~~l~~~l~~~K-npKv~~e~l~~L~~~i 746 (1972)
++-.+ ...+|.++.-|.++ -+|+.+.=+|..++.-.. -++| ++-++..+..++ .-+...-+-..|+++.
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 11000 13456666666664 367777777766654211 1222 333444332222 1244444555566666
Q ss_pred HHhCCC--CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh-hcccHHHHHHHHHHHhcCCCCCCCC
Q 000167 747 EDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNPFEGTVV 823 (1972)
Q Consensus 747 ~~fG~~--~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~efek~~~~~~~~ 823 (1972)
..-... --++...++.+.++ +-..+++|-.-|.-.+.+|..-..+.+...+ .++++.+.+.|..+-.+++. |
T Consensus 230 RGknP~P~w~~isqalpiL~KL-iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt--P-- 304 (526)
T COG5064 230 RGKNPPPDWSNISQALPILAKL-IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT--P-- 304 (526)
T ss_pred CCCCCCCchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC--H--
Confidence 522211 12355677788888 8888998888777777666543333344444 45566666666665444421 1
Q ss_pred CCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhc
Q 000167 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903 (1972)
Q Consensus 824 p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~ 903 (1972)
..|-+-. - ..|.|.-..+=|-.-..+.|...+++++-.+|+||--.+..|-.+....|+.-.-.+|++.|...
T Consensus 305 alR~vGN-I------VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~l 377 (526)
T COG5064 305 ALRSVGN-I------VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHL 377 (526)
T ss_pred HHHhhcC-e------eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHH
Confidence 1111100 0 01122222222222233456667888888999999877776654322233322225677888888
Q ss_pred cccchHHHHHHHHHHHHHHHH
Q 000167 904 LYDSNKNLVMATLITLGAVAS 924 (1972)
Q Consensus 904 L~DsN~~V~~~Al~~l~~La~ 924 (1972)
|.-..-++..+||=.+.....
T Consensus 378 ls~ae~k~kKEACWAisNats 398 (526)
T COG5064 378 LSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 888888888898877665543
No 139
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=86.35 E-value=18 Score=44.31 Aligned_cols=148 Identities=12% Similarity=0.123 Sum_probs=113.0
Q ss_pred ccCChHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhc-hhhhhhhHHH
Q 000167 295 KATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLP 369 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~--~~ki~~-~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp 369 (1972)
..+.|.+-...|..|.+.++ .+.+.- ..-..+.+.|.+++. ..-.-|=..|+.+.+.+.+.+|.+ +.....
T Consensus 21 ~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~---- 96 (307)
T PF04118_consen 21 SSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLP---- 96 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcH----
Confidence 36899999999999988765 333322 233468888888888 777778888889988888888754 222222
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
-..+.++..+.+-.-+||-..++++...+-..++ .+.++++.++-.
T Consensus 97 ---------------------------------i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~s 142 (307)
T PF04118_consen 97 ---------------------------------IYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILS 142 (307)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHH
Confidence 2334455555666678888888888887776666 677888999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHhCchh
Q 000167 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1972)
Q Consensus 450 l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~ 480 (1972)
+..+++|...|+-+...+.+..+...+|++.
T Consensus 143 lLpGLede~sE~~~~~~~ll~~l~~~v~~~~ 173 (307)
T PF04118_consen 143 LLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY 173 (307)
T ss_pred hccccccCCchHHHHHHHHHHHHHHhcChhH
Confidence 9999999999999999999999999999863
No 140
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.00 E-value=7.5 Score=55.43 Aligned_cols=199 Identities=12% Similarity=0.079 Sum_probs=134.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
.+++.+.-++-..|..|+.++.+++...+....-..+......+.+...|-+..|+..+..++..+.+++++.+.||++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 56778888899999999999999997432222112245566777788899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--------chhhHHHHHHHHhcC------------------CCChhHH
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--------LDKMVPYVTTALTDA------------------KLGAEGR 990 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--------l~~ll~~l~~~L~~~------------------~~~~~~R 990 (1972)
++|.++-..-|..-.|..+|.+........-. -..+++.+.+.+... + .+++-
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k-~~Rvi 203 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESK-YQRVI 203 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHh-hHHHH
Confidence 99999999899988898888887765543211 012222222222110 1 12333
Q ss_pred HHHHHHHHHHhccCCCCCC-------hhhhHHH--HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000167 991 KDLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (1972)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~ 1056 (1972)
...+..+...+.......+ ...+... +.+.+.++++.||.+..+++-.+...+....+....+.++
T Consensus 204 ~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~ 278 (1312)
T KOG0803|consen 204 SSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLK 278 (1312)
T ss_pred HHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhh
Confidence 4455555555533332111 2222222 5667899999999999999998887766653333333333
No 141
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=85.46 E-value=5.8 Score=41.15 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhh--HHHHHHH----H-h-
Q 000167 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF--LLPVLLE----K-L- 375 (1972)
Q Consensus 304 eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~--llp~LL~----k-l- 375 (1972)
..+..|..++... +..+.++++.|.++|.+.|..++..|+.++..+.+.-+..|..++.. ++-.++. . .
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4566666665422 34578999999999999999999999999999999999998876432 2222321 1 1
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000167 376 KEKKPTVAESLTQTLQAMH 394 (1972)
Q Consensus 376 kdkk~~V~~aa~~aL~al~ 394 (1972)
++....||+.+...+..|.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2345677777777776653
No 142
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=52 Score=40.49 Aligned_cols=181 Identities=12% Similarity=0.147 Sum_probs=112.9
Q ss_pred hccCChHHHHHHHHHHHHHhc----CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh-hhHH
Q 000167 294 VKATKWSERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLL 368 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~----~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~ll 368 (1972)
..+.+-.+|..|++.|..++. +..+.+ .+-+...+. .+++++..++..|+.+|+..+..--+.-+... ...+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 356778889999999988773 222222 333444444 88899999999999999999875332211111 1256
Q ss_pred HHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhH-----HHHHHHHhhc--CChHHHHHHHHHHHHHHHhcChh-HH
Q 000167 369 PVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDV-----VEDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKA-AV 439 (1972)
Q Consensus 369 p~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~i-----l~~l~~~l~~--Knp~vR~~~l~~L~~~l~~~~~~-~l 439 (1972)
+.|+..+ ++....++..+.-|+-+++.+.......+ ...|..++++ .+.+.|.-++.++..+++..... .+
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 6777776 45555777888899999988722222222 2456677886 66888889999999888765321 11
Q ss_pred HHhhhhHHH-HHHHHhcCCChHHHHHHHHHHHHHHHHhCch
Q 000167 440 LKVHKDYVP-ICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 440 ~~~l~~l~p-~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
.. ....+ .+.....--+-++++++..++-.+......+
T Consensus 249 ~~--~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 249 AS--SLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred HH--HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhc
Confidence 11 11112 2223333445577788877777666655543
No 143
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=85.00 E-value=4.4 Score=42.39 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHH
Q 000167 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1972)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (1972)
+|.+|-.=--.+++|.++..+ .+..+.+++..|.+||+|.+..|...+|++|..++..-...|...++.-...|-
T Consensus 11 sdd~~p~pgy~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik 85 (122)
T cd03572 11 SDDDEPTPGYLYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIR 85 (122)
T ss_pred cCCCCCCchHHHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHH
Confidence 444444444445566666542 233468999999999999999999999999999998877788776665544333
Q ss_pred HHh---C--------CCcHHHHHHHHHHHHHHHH
Q 000167 943 KCL---G--------DNKKHMRECTLTVLDAWLA 965 (1972)
Q Consensus 943 ~~L---~--------D~k~~Vr~Aa~~aL~~i~~ 965 (1972)
.+. + +....||.+|.+++..+..
T Consensus 86 ~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 86 ECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 322 2 2345799999999988764
No 144
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.67 E-value=15 Score=48.22 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000167 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1972)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~ 400 (1972)
.--.+.+.++..++.|..+.|+..|++-|-.+|+.-. .++.-+.-.|...|..-.+..++++..+|..++.. .
T Consensus 55 ~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d 127 (556)
T PF05918_consen 55 DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---D 127 (556)
T ss_dssp GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---C
Confidence 3345778899999999999999999999999988643 35666677777777788888899999999999985 3
Q ss_pred hHhHHHHHHHHhh---cCChHHHHHHHHHHHHHHHhcChhHHH--H-hhhhHHHHHHHHhcC
Q 000167 401 LVDVVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVL--K-VHKDYVPICMECLND 456 (1972)
Q Consensus 401 l~~il~~l~~~l~---~Knp~vR~~~l~~L~~~l~~~~~~~l~--~-~l~~l~p~l~k~l~D 456 (1972)
+...+..|+..+. +....+|..++.||..-+...+...+. + .-.-++..+.+.|.|
T Consensus 128 ~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 128 PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 3334444443332 456789999999998777665444332 1 224466777888887
No 145
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.67 E-value=4.9 Score=51.48 Aligned_cols=107 Identities=25% Similarity=0.413 Sum_probs=82.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHH
Q 000167 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1972)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~ll 938 (1972)
.+.+.||..=.+ |..+|+. ..-. ..|.+.+|++|++..+..++..||.+|..+++.+|..|... -+.|+
T Consensus 13 ~l~~pDWa~Nle----IcD~IN~--~~~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLE----ICDLINS--TEGG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHH----HHHHHhc--CccC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467789986544 5555532 1112 26999999999999999999999999999999999999843 35689
Q ss_pred HHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC-chhhHHHH
Q 000167 939 SDILKCLGDN--KKHMRECTLTVLDAWLAAVH-LDKMVPYV 976 (1972)
Q Consensus 939 p~ll~~L~D~--k~~Vr~Aa~~aL~~i~~~~~-l~~ll~~l 976 (1972)
.-++...+.+ ...||+-+...|++|....+ .+.-+|.+
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~ 124 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDY 124 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhH
Confidence 9998888776 45699999999999998865 24444433
No 146
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=84.66 E-value=7.8 Score=48.80 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHH
Q 000167 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1972)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 469 (1972)
++.|-+|..++.++..+-...++.. +..++|.+..+|.+++.-|+..|+-|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 7889999999999998666655554 478999999999999999999998764
No 147
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.41 E-value=13 Score=40.20 Aligned_cols=96 Identities=26% Similarity=0.395 Sum_probs=70.0
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh--hhhHHHHH
Q 000167 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (1972)
+.+.+|.- +-.|..+++.. +..-.+.+++|+++|+..|.++...|+.++..+.+..|..|... ...++..|
T Consensus 18 ~~~~Dw~~----~l~icD~i~~~---~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l 90 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINSS---PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDEL 90 (140)
T ss_dssp SSS--HHH----HHHHHHHHHTS---TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHH
Confidence 45568843 33455555322 23346899999999999999999999999999999999998755 34677777
Q ss_pred HHHhccCcHH----HHHHHHHHHHHHHHh
Q 000167 372 LEKLKEKKPT----VAESLTQTLQAMHKA 396 (1972)
Q Consensus 372 L~klkdkk~~----V~~aa~~aL~al~~~ 396 (1972)
.+.++.+... |++-+.+.+..|...
T Consensus 91 ~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 91 VKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 7766654432 788888888888765
No 148
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=84.06 E-value=18 Score=46.34 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=106.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-hHHHHHHHHH---HHHHHHHHc-C-h--
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLI---TLGAVASAM-G-P-- 928 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds-N~~V~~~Al~---~l~~La~al-g-~-- 928 (1972)
++.+.+-+.+-..|.+||+.|+. ...++.|+..|...+.+. ..+|++.-+. .+-.++.++ . +
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34455667899999999998862 222477888888877653 3333333333 333334443 2 2
Q ss_pred hhHhhhhhHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCCCChhHHHH
Q 000167 929 AVEKSSKGVLSDILKCLGD----------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAKLGAEGRKD 992 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D----------~k~~Vr~Aa~~aL~~i~~~~~--l----~~ll~~l~~~L~~~~~~~~~R~~ 992 (1972)
.+++|+..++|.++.|+-. +.=.+|+-|...+..++.+.+ . .+++..+..++.+.+-.+....+
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 3689999999999998853 333589999999999998876 2 33455566666554324556777
Q ss_pred HHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCCHH---HHHHHHHHHHHHHHHcCh
Q 000167 993 LFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSD---VRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 993 ~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~d---VR~aA~~~l~~l~~~~G~ 1045 (1972)
++..|..+-...-. .+.+.....-+...+.+.+.. ....|..+...+.++...
T Consensus 361 ai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 361 AIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 77777653221111 122222222233334433332 355666777777666554
No 149
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=83.96 E-value=6.5 Score=43.58 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=69.0
Q ss_pred hhhhhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHH
Q 000167 362 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (1972)
Q Consensus 362 ~~~~~llp~LL~klkdkk------------------~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~l~~Knp~vR~ 421 (1972)
++...++|.++..++-++ -.+|.+|.+|+.+++.. ....+..+++.+..|+++ ...+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 556777788777655443 36899999999999987 225577899999999999 999999
Q ss_pred HHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000167 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1972)
Q Consensus 422 ~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 454 (1972)
-|...|.++....+. .+...++.+++.+.+.|
T Consensus 84 L~~~~l~kl~~~~p~-~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPE-EVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHS-HH-HHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHh
Confidence 999999998766544 45556788888888877
No 150
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=83.91 E-value=89 Score=39.57 Aligned_cols=94 Identities=7% Similarity=0.122 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHccc---cCCC-CChhhHHHHHHhc----cc---cchHHHHHHHHHHHHHHHHHcChhhHh
Q 000167 864 SPDWKVRLESIEAVNKILEEANK---RIQP-AGTGELFGGLRGR----LY---DSNKNLVMATLITLGAVASAMGPAVEK 932 (1972)
Q Consensus 864 d~~Wk~R~eale~l~~ll~~a~~---~I~~-~~~~eL~~~L~~~----L~---DsN~~V~~~Al~~l~~La~alg~~~~~ 932 (1972)
..||+.+..|+..+..+...... .+.. +..-++...+... |. +....++..||+.+..+-..+.+ +
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~---~ 342 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK---E 342 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H---H
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH---H
Confidence 34899999999988888753211 1111 1123444444432 22 44566888889888877766653 4
Q ss_pred hhhhHHHHHHHHhCCCcHHHHHHHHHHH
Q 000167 933 SSKGVLSDILKCLGDNKKHMRECTLTVL 960 (1972)
Q Consensus 933 ~~~~llp~ll~~L~D~k~~Vr~Aa~~aL 960 (1972)
.+..++|.++..|+++...|+..|..|+
T Consensus 343 ~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 7788999999999999999999987764
No 151
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.65 E-value=13 Score=45.18 Aligned_cols=137 Identities=14% Similarity=0.214 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc----hh--hhhhhHHHHHHHHhc--------cCcHHHHHHHH
Q 000167 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESLT 387 (1972)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~----f~--~~~~~llp~LL~klk--------dkk~~V~~aa~ 387 (1972)
.+.-+++.+...+.|....+...+|+|+..|...+... +. .....+..++...+- +....+...+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 45678888999999999999999999999999876533 23 346777777777777 77888999999
Q ss_pred HHHHHHHHh----c----CCChHhHH-HHHHHHhhc--C--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000167 388 QTLQAMHKA----G----CLNLVDVV-EDVKTSVKN--K--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1972)
Q Consensus 388 ~aL~al~~~----~----~~~l~~il-~~l~~~l~~--K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 454 (1972)
.|+..++.. + ...+.+++ +.|+..+.+ + ++.++...++.+..++...+.. ..++++.++|.+...+
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHh
Confidence 999999663 0 12244555 447776653 3 6999999999999999887654 4578899999999999
Q ss_pred cCCCh
Q 000167 455 NDGTP 459 (1972)
Q Consensus 455 ~Ds~~ 459 (1972)
.+.+.
T Consensus 275 ~npf~ 279 (282)
T PF10521_consen 275 ENPFG 279 (282)
T ss_pred cCCCc
Confidence 88763
No 152
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.33 E-value=15 Score=44.51 Aligned_cols=186 Identities=14% Similarity=0.147 Sum_probs=105.9
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
+.+.|++.+.|.+-|++..|-..++.+...- ..+.+-.-..-++.|.+.|.|+-...+....-||..|+..-+...--.
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 4456777778888888777777777665431 111110001123445566677777777778888887776554432111
Q ss_pred hhhHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHh-cc
Q 000167 934 SKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL-TG 1003 (1972)
Q Consensus 934 ~~~llp~ll~~L~--D~k~~Vr~Aa~~aL~~i~~~~~--l-----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l-~~ 1003 (1972)
=..|+.+++..|. |+. .++=+|..+|..++.... . ..-+|.+.+.+.+.. -.++.++-..++..- ..
T Consensus 331 dagfl~pLVrlL~~~dnE-eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNE-EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALND 407 (550)
T ss_pred cccchhHHHHHHhcCCch-hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhcc
Confidence 1235666666554 443 366667778877776431 1 224566677776653 345555544444321 11
Q ss_pred CCCCCChh-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 1004 LSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 1004 ~~~~~~~~-~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1972)
..+..-+. -++..++.-+.|.+.+||.+|.++|..+...+
T Consensus 408 ~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 408 NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 11111111 12333666779999999999999998876543
No 153
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.23 E-value=19 Score=38.53 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=65.3
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcC---CChHHHHHHHHHHHHHH
Q 000167 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~D---s~~~VR~aA~~~l~~l~ 473 (1972)
..+....+..|..-++++||.+...++..|..|+.++++.....+. +.++..+.+.+.+ .+++||..+.+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566777888888899999999999999999999999875332222 3566667777765 58899999999999999
Q ss_pred HHhCch
Q 000167 474 KSVGMR 479 (1972)
Q Consensus 474 ~~~ge~ 479 (1972)
..++..
T Consensus 112 ~~f~~~ 117 (133)
T cd03561 112 ESFGGH 117 (133)
T ss_pred HHhcCC
Confidence 998864
No 154
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.90 E-value=16 Score=49.02 Aligned_cols=180 Identities=16% Similarity=0.121 Sum_probs=119.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHH--ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~--a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
.+.+..+.|+.--+|-.|+..+..+++. +...+.. ..++.++...|+|-+.-|...|++.+..++.. |
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~---ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG---EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH---HHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------c
Confidence 4667778888899999999999999983 2122222 45788889999999999999888877777654 5
Q ss_pred hhhHHHHHHHHhCCCcH-H---HHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc
Q 000167 934 SKGVLSDILKCLGDNKK-H---MRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (1972)
Q Consensus 934 ~~~llp~ll~~L~D~k~-~---Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~ 1003 (1972)
-+.++|.+.+-+...|+ . .|=-+-+++..++...| .+.++..+..++.++ .-.-|...+..+..+...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHH
Confidence 57788888885544332 2 23334466666777666 233333344444433 223477777776665543
Q ss_pred CCC--CCChhhhHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHcChhH
Q 000167 1004 LSG--FPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQET 1047 (1972)
Q Consensus 1004 ~~~--~~~~~~ll~pl~~~-L~D~~~dVR~aA~~~l~~l~~~~G~~~ 1047 (1972)
... +..+.+.+..++.. -.|...-||.+|...+..+....|++.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 321 22223333334443 379999999999999999999999753
No 155
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.64 E-value=6.7 Score=41.08 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=51.7
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh---HHHHHHHHh--------cCCChHHHHHHHH
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD---YVPICMECL--------NDGTPEVRDAAFS 467 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~---l~p~l~k~l--------~Ds~~~VR~aA~~ 467 (1972)
..+.+|++.|..-|++++|.||.-+|..|..++..-+.. +...+.. ++..+...- +|....||++|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 445678888888899999999999999999888765433 3322222 333333322 4556799999999
Q ss_pred HHHHHH
Q 000167 468 VLAAIA 473 (1972)
Q Consensus 468 ~l~~l~ 473 (1972)
++..+.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998765
No 156
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.21 E-value=16 Score=41.44 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH---
Q 000167 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL--- 440 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~--- 440 (1972)
+..+++.+++.+-.++..||.++...+..+...|-+++..++|.+..-..+.|+.+|..+...+....++++.-...
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45678889999999999999999999999998877889999999998888999999999999999988887642221
Q ss_pred HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000167 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
..++.....-..+-.|.....+......++.+...++
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 2222222223334455544333335556666666665
No 157
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.18 E-value=18 Score=39.03 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=62.5
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcC------CChHHHHHHHHHHHH
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND------GTPEVRDAAFSVLAA 471 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D------s~~~VR~aA~~~l~~ 471 (1972)
.+..+.+..|..-++++||.+-..++..|..|+.+|+...-... -+.++..+++.+.+ .++.||+...+.+-.
T Consensus 34 ~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 34 EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 44556666777778899999999999999999999987533222 26677777777753 688999999999988
Q ss_pred HHHHhCc
Q 000167 472 IAKSVGM 478 (1972)
Q Consensus 472 l~~~~ge 478 (1972)
....++.
T Consensus 114 W~~~f~~ 120 (139)
T cd03567 114 WTLELPH 120 (139)
T ss_pred HHHHhcc
Confidence 8877764
No 158
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.01 E-value=2.1e+02 Score=38.83 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHhhhcchh---hhHHHHHHHHHHHhhcChhHH---HHHHHHhhh-hCCChHHHHHHHHHHHHHHHHh---
Q 000167 680 KCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMK-DHKNPKVLSEGILWMVSAVEDF--- 749 (1972)
Q Consensus 680 ~~~~~il~~LveKlgd~K---~r~~a~~~L~~l~e~~~~~~v---l~~l~~~l~-~~KnpKv~~e~l~~L~~~i~~f--- 749 (1972)
..+...++.|+|++.... -|..|...|.+++..+..... +..++..+. +-.+|.....+|+.+..++..=
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 355667778888777653 266666677777665432211 111111111 1234444555555444444311
Q ss_pred ------------CCC----CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh
Q 000167 750 ------------GVS----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (1972)
Q Consensus 750 ------------G~~----~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (1972)
|.- -+.-+..|..+... +++-|-.||..|++++..+-.+-|..++..+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~-~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS-LEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHH-HHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 000 01113456666666 8888999999999999999988887766544
No 159
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=81.94 E-value=1.5e+02 Score=39.30 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=80.6
Q ss_pred ChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000167 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1972)
Q Consensus 927 g~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l--~~ll~--~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1972)
...+++.+..++|+++.+|+.....||..+.+.+..+-..+.- .--+| .|....+++..++.+|.-.+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999999888752 23344 5677777654457899999999987777
Q ss_pred cCCCCCChhhhHHHHHhhcCCCC---HHHHHHHHHHHHHHHHHc
Q 000167 1003 GLSGFPDAAHLLKPASIAMTDKS---SDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~---~dVR~aA~~~l~~l~~~~ 1043 (1972)
..+.. +-..+++.++.++.... .++.......+..+++..
T Consensus 94 Rl~~~-e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDDE-ERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCHH-HHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 66431 22344555888876432 334334434444444443
No 160
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.53 E-value=25 Score=43.81 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=81.6
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHhH
Q 000167 330 LKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDV 404 (1972)
Q Consensus 330 L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~-----~~l~~i 404 (1972)
|...++.-|.+|+..|+.-|..+-..--.....+.-.+++.+.+..-|....||++...+++.++-..| ..+.-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 334555667777777777666665542222334556677888888889999999999999999665422 223457
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000167 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1972)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1972)
++.+..+|.|-.|.+|..++.||..++..+++...
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 88899999999999999999999999999987533
No 161
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.33 E-value=63 Score=43.62 Aligned_cols=178 Identities=12% Similarity=0.170 Sum_probs=106.2
Q ss_pred HHHHHhhhcC-ChHHHHHHHHHHHHHHHhccc--cc-----hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC
Q 000167 604 ADTVGQLKSA-VWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (1972)
Q Consensus 604 ~~l~~~L~s~-~Wk~Rl~a~e~L~~~v~~~~~--~~-----~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~ 675 (1972)
..++.+|+.. +--.-++++.+|.+.+.-+.+ +. ..+.+|+.+|. .+.||-++..++.+|.++.+.+|
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~-----~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLS-----HEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHhhcc
Confidence 4567777765 777777788777766543222 11 12344555554 57899999999999999999887
Q ss_pred CCchhhH-HHHHHHHHhhhcchhhhH---HHHHHHHHHHhhcChhHH----HHHHHHhhhhCCChHHHHHHHHHHHHHHH
Q 000167 676 KFPKKCV-VLCLLGISERVADIKTRA---HAMKCLTTFSEAVGPGFI----FERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (1972)
Q Consensus 676 ~~~~~~~-~~il~~LveKlgd~K~r~---~a~~~L~~l~e~~~~~~v----l~~l~~~l~~~KnpKv~~e~l~~L~~~i~ 747 (1972)
.-..-.+ ...||.+++||-..-.-+ ++.++|..|....+-..+ +..++.++ +--+.-++..+|...+++..
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 5332222 247899999988865444 444455555544433221 11122221 11233455566666667766
Q ss_pred HhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000167 748 DFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1972)
Q Consensus 748 ~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (1972)
......+. +-+.++.+..+ |++.+..+-+.+.-++..+..
T Consensus 324 si~sd~f~~v~ealPlL~~l-Ls~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPL-LSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred cCCCccchHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHH
Confidence 55544332 34566777777 888887766666556555543
No 162
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.15 E-value=4.8 Score=45.76 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhC
Q 000167 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (1972)
Q Consensus 129 v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (1972)
-++.+++...+.+++++..++..+..+++ +|. ++|+..+|.+..|..++|+.||+.|..+..+++.--+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGL--vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-QGL--VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCC--CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 45566777889999999999999988887 686 6799999999999999999999999999998876554
No 163
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=80.61 E-value=52 Score=49.30 Aligned_cols=182 Identities=12% Similarity=0.163 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHHHhc----CCCCCCCCh-HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Q 000167 297 TKWSERKDAVAELTKLAS----TKRIAPGDF-TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (1972)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~----~~ki~~~~y-~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (1972)
.+=..+.-|++.|++++- ...+..-.+ .++++.|..++. ..+..|....++|+..|...-+..+..-++.++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 355578888888888762 222222223 378888888787 66778899999999999988888888888889988
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--cCCCh--HhHHHHHHHHh----hcC-ChHHHHHHHHHHHHHHHhcCh-----
Q 000167 371 LLEKLKEKKPTVAESLTQTLQAMHKA--GCLNL--VDVVEDVKTSV----KNK-VPLVRSLTLNWVTFCIETSSK----- 436 (1972)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l--~~il~~l~~~l----~~K-np~vR~~~l~~L~~~l~~~~~----- 436 (1972)
+--.++++.+.+++.+.+++..++.. .+.+. ...+.+++.++ +++ +..+=..++.+|..|......
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~ 1308 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS 1308 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc
Confidence 88888999999999999999988764 11111 23344444433 333 355555666666654221100
Q ss_pred ------------------------------hHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 437 ------------------------------AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 437 ------------------------------~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
.....+-=.++-.+.++..|..++||..|.+.|-.+....|.
T Consensus 1309 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1309 SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 000011112333445667899999999999999888888885
No 164
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=80.60 E-value=12 Score=38.52 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=59.3
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhcc
Q 000167 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (1972)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld 489 (1972)
.+...-|..++.-+..+++ .....+....+.++-.|..+++.. ++|+.|.+|-..|.+.++++++.++++..-
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF 98 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3556889999999999998 444556666677777777777766 999999999999999999988888887653
No 165
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.52 E-value=9.1 Score=38.18 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=66.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
..++.+.|..--+|-.|+..+.+++.... ........++..+...|+|...-|...|++.+..|+... -..
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-------p~~ 77 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-------PDE 77 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-------hHH
Confidence 45667788888899999999999998532 222234678888899999999999999999999998654 345
Q ss_pred HHHHHHHHhCCCc
Q 000167 937 VLSDILKCLGDNK 949 (1972)
Q Consensus 937 llp~ll~~L~D~k 949 (1972)
++|.+++.+.|.+
T Consensus 78 vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 78 VLPILLDEYADPS 90 (92)
T ss_pred HHHHHHHHHhCcc
Confidence 7888888777654
No 166
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=80.42 E-value=22 Score=42.41 Aligned_cols=168 Identities=13% Similarity=0.136 Sum_probs=104.4
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 292 EGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~--~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
..+.+.+-+.|..|+..|..+....+-.. ..| +...+...+. ..|+.+...++++|..|. ...++...+...+
T Consensus 61 ~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i 136 (254)
T PF04826_consen 61 SLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYI 136 (254)
T ss_pred HHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhH
Confidence 34566777889889999888763211110 123 3344444555 568888888899998886 3344455566678
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-----HHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChh-----
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-----VVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKA----- 437 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-----il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~~----- 437 (1972)
|.++..+...+..++..+-.+|..+..+ ..-..+ ++..+..-++.+ +..+-..++.|+..+-..+.+.
T Consensus 137 ~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~ 215 (254)
T PF04826_consen 137 PDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFV 215 (254)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceec
Confidence 8888888777777887777777766554 111112 233444444433 4567778888888765544221
Q ss_pred -------HHH---HhhhhHHHHHHHHhcCCChHHHHH
Q 000167 438 -------AVL---KVHKDYVPICMECLNDGTPEVRDA 464 (1972)
Q Consensus 438 -------~l~---~~l~~l~p~l~k~l~Ds~~~VR~a 464 (1972)
.+. .-.+.+..-+.....++|++||+.
T Consensus 216 ~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 216 QDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred cccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 111 123557777778888999999874
No 167
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.16 E-value=6.6 Score=49.65 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=63.1
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000167 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1972)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l 412 (1972)
++|.|--|++.|.-+++.++-.= +.+++..++.+.++ +..||-...-+|.-.+.. ++....++.+-.-+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~ 630 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALM 630 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHh
Confidence 34555555555555554443211 23455566666443 566666655555554443 34333333333444
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChH
Q 000167 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1972)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 460 (1972)
.+-|--||+.++..+..++-.|.+. +.+..+.|...+-..+.|.+.+
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhHh
Confidence 5667777777777777666665543 4444566666666666666554
No 168
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=79.82 E-value=26 Score=45.11 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=106.0
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhh---h----chhhhhh
Q 000167 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLR---T----HFSGSSR 365 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~---~----~f~~~~~ 365 (1972)
+.+.+=..|.+||+.|+. ...++.+++-+...|. ....+|+..-+..|-.|-+..+ + .+++|+.
T Consensus 216 ~~g~~~~~r~eAL~sL~T--------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh 287 (576)
T KOG2549|consen 216 CTGSDEPLRQEALQSLET--------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH 287 (576)
T ss_pred HhcCCHHHHHHHHHhhcc--------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 356888899999998754 2236678888887777 3344444444444444433333 2 2579999
Q ss_pred hHHHHHHHHhccCcH----------HHHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhh-c-CChHHHHHHHHHHHH
Q 000167 366 FLLPVLLEKLKEKKP----------TVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVK-N-KVPLVRSLTLNWVTF 429 (1972)
Q Consensus 366 ~llp~LL~klkdkk~----------~V~~aa~~aL~al~~~~~~~l~----~il~~l~~~l~-~-Knp~vR~~~l~~L~~ 429 (1972)
.++|.+|.++-.|+- .+|+=+...+..++.+..+... +|+..+..++. + +.+...-+++.-|..
T Consensus 288 ~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 288 QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 999999999876654 2778888888888876222222 34444444443 3 557888888777765
Q ss_pred HHHhcChhHHHHhhhhHHHHHHHHhcCCCh---HHHHHHHHHHHHHHHHhC
Q 000167 430 CIETSSKAAVLKVHKDYVPICMECLNDGTP---EVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 430 ~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~---~VR~aA~~~l~~l~~~~g 477 (1972)
+-...-...+.+.++.+.--+...+.+... -.+..|..+.+.|.++..
T Consensus 368 lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~ 418 (576)
T KOG2549|consen 368 LGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAEN 418 (576)
T ss_pred hhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhh
Confidence 433221222223444444445444544333 336677777777776655
No 169
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.23 E-value=8 Score=47.89 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=94.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChh-hHhhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSS 934 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~-~~~~~ 934 (1972)
.+++.++.-.|-++|++|+..+.+++.. ++.+....+.+++.-+..++.|-...|+.....++..+...+++. ..+++
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4788889999999999999999999975 333333335788888888999999999999999999888777665 58888
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
..+++-+...+...-+.||.-+...+.-++..++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 9999999999999999999999988888888886
No 170
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.17 E-value=2.5e+02 Score=38.08 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000167 729 HKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1972)
Q Consensus 729 ~KnpKv~~e~l~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (1972)
--|..||.++...|.++. .... ....+...++.+ +-|++..||+.|.-.+..+-
T Consensus 477 LEn~ivRaaAv~alaKfg----~~~~~l~~sI~vllkRc-~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFG----AQDVVLLPSILVLLKRC-LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhHHHHHHHHHHHh----cCCCCccccHHHHHHHH-hcCchHHHHHHHHHHHHHhh
Confidence 357889999998776654 3322 234566667775 99999999999998888776
No 171
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.02 E-value=7.9 Score=49.64 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=72.2
Q ss_pred hhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh--hhhHHHH
Q 000167 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1972)
Q Consensus 293 ~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~ 370 (1972)
.+.+.+|.--. +|..+++... +.-.+++++|+|+|...++.|...|+.+|+.+.+..|..|... -+.|+.-
T Consensus 13 ~l~~pDWa~Nl----eIcD~IN~~~---~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 13 SLAEPDWALNL----EICDLINSTE---GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred cccCccHHHHH----HHHHHHhcCc---cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 36778886543 3555554221 2233899999999999999999999999999999999998844 4577888
Q ss_pred HHHHhccC--cHHHHHHHHHHHHHHHHh
Q 000167 371 LLEKLKEK--KPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 371 LL~klkdk--k~~V~~aa~~aL~al~~~ 396 (1972)
++..++.+ -..|++-+...|++|...
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 88877776 446777777777777653
No 172
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.42 E-value=31 Score=49.63 Aligned_cols=189 Identities=17% Similarity=0.203 Sum_probs=133.7
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 291 WEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~--~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
..++.=++=+.|..||.+|..++..-.... +-+......+.+.+.|-+..|+....+.+..+..++++...||.+.++
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li 126 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLI 126 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 344444556678889999999875332221 225667778888888999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhc--------C-CChHhHHHHH----------------HHHhhcCChHHHHHH
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--------C-LNLVDVVEDV----------------KTSVKNKVPLVRSLT 423 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~--------~-~~l~~il~~l----------------~~~l~~Knp~vR~~~ 423 (1972)
|..+-..-|.-..|..+|.+.+...+.-. | ..+-.++.++ .+.++.|-+++...+
T Consensus 127 ~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ss 206 (1312)
T KOG0803|consen 127 PPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSS 206 (1312)
T ss_pred hhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHH
Confidence 99999888888888888888877665420 1 0011122222 123456778888888
Q ss_pred HHHHHHHHHhcChh-HHH---HhhhhH--HHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch
Q 000167 424 LNWVTFCIETSSKA-AVL---KVHKDY--VPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 424 l~~L~~~l~~~~~~-~l~---~~l~~l--~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
+..+...+...+.. .+. ...+.+ ...+-+.+.+..|.+|.+..+++-.+.+.+...
T Consensus 207 Ll~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 207 LLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 88888888554321 111 111221 245678889999999999999998887766544
No 173
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.39 E-value=1.7e+02 Score=38.28 Aligned_cols=133 Identities=11% Similarity=0.192 Sum_probs=99.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhh-----
Q 000167 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK----- 727 (1972)
Q Consensus 653 ~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~----- 727 (1972)
+-++......+|+++..++. ++.+...++..++..|+.-.+-......+.+++..++........+..++..+.
T Consensus 187 ~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCcc
Confidence 34455566788888888877 577888888889888887766667888999999999986666677788888872
Q ss_pred hCCChHHHHHHHHHHHHHHHHhCCCC---CChhh--HHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000167 728 DHKNPKVLSEGILWMVSAVEDFGVSH---LKLKD--LIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1972)
Q Consensus 728 ~~KnpKv~~e~l~~L~~~i~~fG~~~---l~~k~--li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (1972)
...++.+..+++..+..++-..|..+ ++... +++-+..+ +...++.|=.....++-.+.
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHHHHHHHHHHH
Confidence 23578888899999999998775554 33444 88888887 88888866555555555554
No 174
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.05 E-value=9.1 Score=38.17 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=64.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHh
Q 000167 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (1972)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~ 484 (1972)
+..++.-+.+.-+.+|...+..|..++.... . -....+.++..+...|.|.++=|=-.|.++|..++...+++.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~-~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-E-PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-c-chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 4445556678889999999999999998766 1 1123578899999999999999999999999999999998766555
Q ss_pred Hh
Q 000167 485 IE 486 (1972)
Q Consensus 485 l~ 486 (1972)
++
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 44
No 175
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.00 E-value=48 Score=36.90 Aligned_cols=114 Identities=12% Similarity=0.153 Sum_probs=82.8
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh-hhchhhhhhhHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHh--c
Q 000167 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKA--G 397 (1972)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~LL~klkd-kk~~V~~aa~~aL~al~~~--~ 397 (1972)
+.+.++.-+.+.+.+.+..-+..|+..++.++..- ..-|..+....+..++..+.. ..+.+.+++..++..++.+ +
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45666666777777877888889999999999876 455778888888888888865 4557789999999999987 1
Q ss_pred ---------CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000167 398 ---------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1972)
Q Consensus 398 ---------~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1972)
...+..+++.++..++. ......++..|..++..++..
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 11133344444443333 677788999999999887653
No 176
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=77.56 E-value=20 Score=39.48 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=58.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhcc--------ccchH---HH------HHHHHH
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL--------YDSNK---NL------VMATLI 917 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~--~~I~~~~~~eL~~~L~~~L--------~DsN~---~V------~~~Al~ 917 (1972)
+.+..+++.+-++|..|++.+..++.... ..+....|..++.+|...+ ...+. .. ...+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 46778899999999999999999997532 4555556888888887643 11111 11 122333
Q ss_pred HHHHHHHHcChhhH-hhhhhHHHHHHHHhCCCc
Q 000167 918 TLGAVASAMGPAVE-KSSKGVLSDILKCLGDNK 949 (1972)
Q Consensus 918 ~l~~La~alg~~~~-~~~~~llp~ll~~L~D~k 949 (1972)
++..++....+.|. +.+..++..|.+.+.+..
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 33333333323332 456777777777777766
No 177
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=77.52 E-value=11 Score=45.95 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=64.3
Q ss_pred hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000167 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (1972)
Q Consensus 893 ~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~l 969 (1972)
-.+.+.+|.+||+..+..|+..||.++..++..+|+.|..- .+.|..-+...+.+ ..+.|+......+..|.+.+.-
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999988653 45677777777774 4456899998999999887653
Q ss_pred hh
Q 000167 970 DK 971 (1972)
Q Consensus 970 ~~ 971 (1972)
+.
T Consensus 123 Dp 124 (462)
T KOG2199|consen 123 DP 124 (462)
T ss_pred Cc
Confidence 33
No 178
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.40 E-value=3.4e+02 Score=38.62 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHh---c-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc
Q 000167 323 FTEVCRTLKKLI---T-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAG 397 (1972)
Q Consensus 323 y~~l~~~L~k~l---~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~ 397 (1972)
.+.+.+.+.+.. + -+|+.+...|--+++.|.-- .. .|...-+|.++.-+ |-+.+.||..+..++.-+.-..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa---~fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SA---EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hH---HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 445555555554 2 45677777777777665432 22 34455556666555 4677888877766666554321
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.+-++..-+.+..-|.+-++.||..|+..|..++-+- ..+ +|-.++-+..|+.|.++++|+-|..-|-.+..
T Consensus 993 pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 3446677788889999999999999999998877541 112 25667889999999999999999977766654
No 179
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=77.38 E-value=2.4e+02 Score=36.79 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=44.4
Q ss_pred HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCC---CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000167 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1972)
Q Consensus 718 vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~---l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (1972)
-+.+++..+ --.|.-||++++.+|+. ||.+. +....+...++.+ +.+.+.+||.-|.-++..|.
T Consensus 488 yvrhIyNR~-iLEN~ivRsaAv~aLsk----f~ln~~d~~~~~sv~~~lkRc-lnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 488 YVRHIYNRL-ILENNIVRSAAVQALSK----FALNISDVVSPQSVENALKRC-LNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHHHHH----hccCccccccHHHHHHHHHHH-hhcccHHHHHHHHHHHHhhh
Confidence 334444443 23577889998877654 66542 3345677777775 99999999999998887775
No 180
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.94 E-value=30 Score=36.98 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHH
Q 000167 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAK 474 (1972)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~Ds~~--~VR~aA~~~l~~l~~ 474 (1972)
..+....+..|..-++++||.+-..++..|..|+.+++...-.. .-+.++..+.+.+.++.. .||+...+.+.....
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 35566777788888899999999999999999999998653222 235677788888876554 499999999999998
Q ss_pred HhCch
Q 000167 475 SVGMR 479 (1972)
Q Consensus 475 ~~ge~ 479 (1972)
.++.+
T Consensus 112 ~f~~~ 116 (133)
T smart00288 112 AFKND 116 (133)
T ss_pred HHcCC
Confidence 88653
No 181
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=76.56 E-value=9.3 Score=43.74 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChh
Q 000167 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 988 (1972)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~ 988 (1972)
...-...+.+++.+...+|....+++..++..+-+.-.+..-..|+.+..|+.+.++.+|++.++..+-=-+.+......
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCc
Confidence 34556778999999999999888888888888877777777789999999999999999988877643322221111233
Q ss_pred HHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000167 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (1972)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (1972)
.|.=++-.|.+.+.+. ....+...+.|+...+
T Consensus 94 ~raWLLPlLr~~i~~~-~L~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA-SLSFFVEEFLPLARRL 125 (198)
T ss_pred ccchhHHHHHHhccCC-ChHHHHHHHHHHHHHH
Confidence 5665666666554322 1234455666655544
No 182
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=76.27 E-value=14 Score=40.98 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=81.7
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc-C-CCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhh-------c
Q 000167 290 FWEGVKATKWSERKDAVAELTKLAS-T-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT-------H 359 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~-~-~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~-------~ 359 (1972)
....+.++++..|-.|+.-+..++. + +.+....|...++.|.+.++ .....+...++.++..|...++. .
T Consensus 30 i~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei 109 (165)
T PF08167_consen 30 INSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREI 109 (165)
T ss_pred HHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 3444678899999999998888774 2 55555678899999999998 56677888999999999987653 2
Q ss_pred hhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000167 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (1972)
..|.+..+++.++..+.+ ..+.+.+..+|..++.+
T Consensus 110 ~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 110 ATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred hhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 348888899999988876 56667777888887765
No 183
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=75.33 E-value=33 Score=42.92 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=74.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-------hHHHHHHHHHHHHHHHHHcChhhHh
Q 000167 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-------NKNLVMATLITLGAVASAMGPAVEK 932 (1972)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds-------N~~V~~~Al~~l~~La~alg~~~~~ 932 (1972)
+.+-+.+-..|.+|++.|+. ... ..+|++.|...+.+. |..+....++++..|...-.-.+++
T Consensus 185 ~a~~~~~~~~r~~aL~sL~t-----D~g-----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 185 EALVGSNEEKRREALQSLRT-----DPG-----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHhCCCHHHHHHHHHHhcc-----CCC-----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 34455677788888887652 122 355666565554332 2222333333433333333335789
Q ss_pred hhhhHHHHHHHHhC----------CCcHHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCCCChhHHHHHHHH
Q 000167 933 SSKGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAKLGAEGRKDLFDW 996 (1972)
Q Consensus 933 ~~~~llp~ll~~L~----------D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~----~l~~~L~~~~~~~~~R~~~l~~ 996 (1972)
|+..++|.++.|+- +..-.+|+.|...|..++..++ ...+.| .+..+|.+++.+.....+++..
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G 334 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG 334 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence 99999999999883 2223699999999999999876 233334 3444444433122235555544
Q ss_pred HH
Q 000167 997 LS 998 (1972)
Q Consensus 997 L~ 998 (1972)
|.
T Consensus 335 L~ 336 (343)
T cd08050 335 LS 336 (343)
T ss_pred HH
Confidence 43
No 184
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=74.93 E-value=71 Score=40.50 Aligned_cols=134 Identities=11% Similarity=0.084 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH-H------------
Q 000167 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP-Y------------ 975 (1972)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~-~------------ 975 (1972)
..+..+.+.++..+..-....|..++...+|.++..+-++.+.+|..|..++..+...++....+. .
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 458889999999999988888999999999999999999999999999999888877776322111 1
Q ss_pred ---------HHHHHhcCCCChhHHHHHHHHHHHHhccC--CCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 976 ---------VTTALTDAKLGAEGRKDLFDWLSKQLTGL--SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 976 ---------l~~~L~~~~~~~~~R~~~l~~L~~~l~~~--~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1972)
+...+.+++ +...=..++.++...+... .....+..++...-.|+++.++.||..|..|=..++..+
T Consensus 228 ~~~~~~~~~L~~mi~~~~-~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~ 305 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKD-EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYAS 305 (372)
T ss_pred cHHHHHHHHHHHHHhCcC-CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 122222211 1222345666666655432 112355677777788999999999999999988887633
No 185
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.07 E-value=32 Score=45.51 Aligned_cols=160 Identities=17% Similarity=0.123 Sum_probs=110.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhc-cccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHH
Q 000167 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (1972)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~-L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ll 938 (1972)
+.+.|++--.|..++-.+.---.+ +.+ ...+.-|... ++|.|-.|++.|...||-++-. + ...+
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~G-----Tgn--nkair~lLh~aVsD~nDDVrRaAVialGFVl~~---d-----p~~~ 590 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVG-----TGN--NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR---D-----PEQL 590 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhc-----cCc--hhhHHHhhcccccccchHHHHHHHHHheeeEec---C-----hhhc
Confidence 346888999999988876532221 111 3344444443 6999999999998877765421 1 3456
Q ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--CCChhhhHH
Q 000167 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLK 1015 (1972)
Q Consensus 939 p~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--~~~~~~ll~ 1015 (1972)
|.++..|.+ -+++||-.+.-+|.-.+.-+|....+..|-+...++ +..+|+.++--++-.+-.+.. .+.+..+.+
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 777777776 568899999999999988899887777666655654 567999998887766655443 355666667
Q ss_pred HHHhhcCCCCHHHHHHHHHHH
Q 000167 1016 PASIAMTDKSSDVRKAAEACI 1036 (1972)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~l 1036 (1972)
-+.+.+.|++.++-..--+++
T Consensus 669 ~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 669 QLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred HHHHHhhhhhhHHHHHHHHHH
Confidence 777888888887644333333
No 186
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=73.57 E-value=70 Score=41.14 Aligned_cols=203 Identities=13% Similarity=0.066 Sum_probs=124.5
Q ss_pred hhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhh-h
Q 000167 290 FWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-F 366 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~-~ 366 (1972)
+.+.+.+.+=.||.-...-|..+- +.+..-+.-...+...|..-+. ..+...+...+.+++.+.+|+...+..... .
T Consensus 138 Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~f 217 (409)
T PF01603_consen 138 LLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQF 217 (409)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 344568899999987666677754 2221111111223333333343 566678899999999999987755543333 3
Q ss_pred HHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh
Q 000167 367 LLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1972)
Q Consensus 367 llp~LL~klkdkk~~-V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 445 (1972)
+...++-..+-+.-. -......|+..++.+...-...++..|+...---|++=..--+..+..+++..++..+.+....
T Consensus 218 l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~ 297 (409)
T PF01603_consen 218 LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVP 297 (409)
T ss_dssp HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334445455555433 3678889999988873333445666666666556666556678889999998888888889999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHH
Q 000167 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (1972)
Q Consensus 446 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~ 499 (1972)
+...+.+|++..+-.|-+.|. ..+.+..+..++.+-...-...|-..
T Consensus 298 lf~~la~ci~S~h~qVAErAl-------~~w~n~~~~~li~~~~~~i~p~i~~~ 344 (409)
T PF01603_consen 298 LFKRLAKCISSPHFQVAERAL-------YFWNNEYFLSLISQNSRVILPIIFPA 344 (409)
T ss_dssp HHHHHHHHHTSSSHHHHHHHH-------GGGGSHHHHHHHHCTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHH-------HHHCCHHHHHHHHhChHHHHHHHHHH
Confidence 999999999999999966665 45566555555555444333344343
No 187
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=73.42 E-value=4.6e+02 Score=39.96 Aligned_cols=296 Identities=11% Similarity=0.081 Sum_probs=151.4
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhc---cccch-hH-HHHHHHHhcCCCC-ccchHHHHHHHHHHHHHHHHHcCC-
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV---QNLDQ-SV-EILVRLVCMLPGW-SEKNVQVQQQVIEVINYLAATATK- 676 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~---~~~~~-~~-~~lv~~L~~~p~~-~DsN~qV~~~~Le~l~~l~~~~~~- 676 (1972)
+-++..-.+.|-..+.-|+..|.+..... .+... .. ..+++-|.. -+ +-.+..|.+..++++..++...+.
T Consensus 1140 ~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~--im~~s~~~eVrE~ILeCv~qmI~s~~~n 1217 (1780)
T PLN03076 1140 DFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVI--VMRKSNAVEIRELIIRCVSQMVLSRVNN 1217 (1780)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHH--HHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence 33444334556667777777766553331 11110 01 122232211 01 234557888888888887765432
Q ss_pred C--chhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhh-cC---h--hH----HHHHHHHhhhhCCChHHHHHHHHHHHH
Q 000167 677 F--PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA-VG---P--GF----IFERLYKIMKDHKNPKVLSEGILWMVS 744 (1972)
Q Consensus 677 ~--~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~-~~---~--~~----vl~~l~~~l~~~KnpKv~~e~l~~L~~ 744 (1972)
+ +.+.+..++..... --+..+-..|.+++..++.. ++ . .- .+..+..+.....++++-..++..|..
T Consensus 1218 IkSGWktIF~VLs~aa~-d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~ 1296 (1780)
T PLN03076 1218 VKSGWKSMFMVFTTAAY-DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF 1296 (1780)
T ss_pred hhcCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHH
Confidence 2 34444444443331 11123456677777766543 11 0 11 234444454334467777777777775
Q ss_pred HHHHh-----CC---------------------CC----CC----hhh---HHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000167 745 AVEDF-----GV---------------------SH----LK----LKD---LIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1972)
Q Consensus 745 ~i~~f-----G~---------------------~~----l~----~k~---li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (1972)
+...+ +. .. .+ ..- ++.-+.++ ..+..++||..|++.|-.+.
T Consensus 1297 ~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l-~~D~RlEVR~~ALqtLF~iL 1375 (1780)
T PLN03076 1297 CATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSEL-SFDPRPEIRKSALQVLFDTL 1375 (1780)
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHH
Confidence 54333 10 00 00 011 22223444 45789999999999887777
Q ss_pred HhhChhHHh-----hhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhc
Q 000167 788 KFVGPDIKG-----FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862 (1972)
Q Consensus 788 ~~~G~~l~~-----~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l 862 (1972)
...|..+.. .+..+--.++..+...++......+. .+.+. .+ . ...
T Consensus 1376 ~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~--~~~~~------------~~-----------~----~~~ 1426 (1780)
T PLN03076 1376 RNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPE--GQGVD------------GD-----------Q----GEL 1426 (1780)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccc--ccccc------------cc-----------c----cch
Confidence 777765442 12333333344443333221110000 00000 00 0 011
Q ss_pred CCCCHH--HHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 863 ESPDWK--VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 863 ~d~~Wk--~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
..+.|- .-.-|++.+-.+...--..|.+ .+.+++..|...+...|..++..++.|+..|....|..|..-
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~ 1498 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDE 1498 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 233574 3455666666666532111222 346677777777888999999999999999999999888653
No 188
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=72.98 E-value=70 Score=42.22 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChH
Q 000167 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPL 418 (1972)
Q Consensus 339 ~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~ 418 (1972)
..+-..|++.|..+ -+.|......-+-++++.|.|....||..|...|-.++......+..|.+.|...|+...+.
T Consensus 36 ~k~K~Laaq~I~kf----fk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 36 PKEKRLAAQFIPKF----FKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPV 111 (556)
T ss_dssp HHHHHHHHHHHHHH----HCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HH
T ss_pred HHHHHHHHHHHHHH----HhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHH
Confidence 44555666655544 45788889999999999999999999999988888888753356788889888999988888
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
-...+=+.|..++...++..+...++.+... ...+..||+.+.+.+..-+.-++.
T Consensus 112 E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHhhCcH
Confidence 7777777777777777776665544444432 245678999988877654444443
No 189
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.91 E-value=2e+02 Score=40.62 Aligned_cols=131 Identities=14% Similarity=0.003 Sum_probs=86.7
Q ss_pred HhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHH--
Q 000167 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVP-- 974 (1972)
Q Consensus 901 ~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~----l~~ll~-- 974 (1972)
..|..|....++..++.-|+.........|-. ..++--+=..|.|+...||..+..+|..++.+-. +..++.
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 45678999999998888888887776655532 2334444566789999999999999999999832 222222
Q ss_pred --HHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHH
Q 000167 975 --YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1972)
Q Consensus 975 --~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1972)
-|.+.. +...++.+|..-+..+...... ..--...+.+++.++-|.+..|+.+|..-+.
T Consensus 371 K~RIVeMa-drd~~~~Vrav~L~~~~~~~~~---g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 371 KDRIVEMA-DRDRNVSVRAVGLVLCLLLSSS---GLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHHHHHH-hhhcchhHHHHHHHHHHHHhcc---cccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 333333 2223566776655554322111 1112456888999999999999999876553
No 190
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=72.71 E-value=63 Score=35.01 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=69.2
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHHH
Q 000167 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPV 370 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~ 370 (1972)
+.+.+|.-=.+ |...++.. ...-.+.+++|+++|. ..|.+|+..|+.+++.+.+..|..|...+ +.++..
T Consensus 14 l~~~dw~~ile----icD~In~~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e 86 (141)
T cd03565 14 LQSEDWGLNME----ICDIINET---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKD 86 (141)
T ss_pred CCCcCHHHHHH----HHHHHhCC---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhH
Confidence 45678865433 44444322 1234689999999998 67999999999999999999999998653 467776
Q ss_pred -HHHHhccC---cHHHHHHHHHHHHHHHHh
Q 000167 371 -LLEKLKEK---KPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 371 -LL~klkdk---k~~V~~aa~~aL~al~~~ 396 (1972)
|.+.+..+ ...|++-+...+..|...
T Consensus 87 ~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 87 VLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 66666543 347888888888888754
No 191
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=72.47 E-value=47 Score=45.26 Aligned_cols=167 Identities=15% Similarity=0.161 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHh--hhchhhhhh--hHHHHHHHHhccCcH
Q 000167 306 VAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL--RTHFSGSSR--FLLPVLLEKLKEKKP 380 (1972)
Q Consensus 306 L~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~--~llp~LL~klkdkk~ 380 (1972)
++-|+.+..++.-....+.+.+.-|.+.+. ..+- ...+.|+|.|++-- .-++...+. .++|.|.+.++....
T Consensus 471 lKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 445677776552222335555666666666 2232 45567777777643 335666664 688999998865432
Q ss_pred --HHHHHHHHHHHHHHHh-cCCC-h--HhHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHH
Q 000167 381 --TVAESLTQTLQAMHKA-GCLN-L--VDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICM 451 (1972)
Q Consensus 381 --~V~~aa~~aL~al~~~-~~~~-l--~~il~~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~ 451 (1972)
.+.-.+...+.++... .|.. + ..+++.+.+.|+.|. -..=.+++-.+.+++.+-. ...+... ..+...++
T Consensus 548 ~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~yli 626 (708)
T PF05804_consen 548 EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLI 626 (708)
T ss_pred ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHH
Confidence 3332232333333221 1111 1 246777777777655 4444455555555554422 1222222 45788999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHh
Q 000167 452 ECLNDGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 452 k~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
.++.|.|++||..|-.||..++.+=
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999888653
No 192
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=72.00 E-value=34 Score=41.60 Aligned_cols=159 Identities=11% Similarity=0.155 Sum_probs=104.3
Q ss_pred cCCChHHHH----HHHHHHHH-HhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh----hhh-
Q 000167 21 LHKNWKVRN----EANIDLAA-LCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA----GRY- 90 (1972)
Q Consensus 21 ~~k~WK~R~----~ayeel~~-~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~----~~~- 90 (1972)
.-+.||.-- ..+..++. .... ...+.-|.-+.+.+..++.|..+.+...|+.+|..|+++..... .++
T Consensus 85 ~~~~WK~~~~~~~~~l~w~v~~~~~~--~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tG 162 (282)
T PF10521_consen 85 QRQPWKSNPGLASHVLSWIVLSQLDR--PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTG 162 (282)
T ss_pred ccCCcccCCcccHHHHHHHHHhcCCc--chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcC
Confidence 567888754 34444444 1111 11222344456777788999999999999999999999876533 233
Q ss_pred hHHHHHHHHHhhcC---------CChhHHHHHHHHHHHHHhhh-----h-----h-hhHHHHHHHHhh--cC--ChhhHH
Q 000167 91 AKEVCDAIAAKCLT---------GRPKTVEKAQAVFMLWVELE-----A-----V-DVFLDVMEKAIK--NK--VAKAVV 146 (1972)
Q Consensus 91 ~~~v~~~LveK~l~---------~k~~~k~~a~~~ll~~~E~~-----~-----~-~~v~~~L~~~~~--~K--npKv~~ 146 (1972)
..+|+-..+.+|+. .-..+-..+..|++.++... . . +.+-+.++.++. .+ +|+++.
T Consensus 163 l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 163 LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRT 242 (282)
T ss_pred hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHH
Confidence 34555555556654 12345566777777775541 1 1 233344666654 23 699999
Q ss_pred HHHHHHHHHHHHhCCCcc-ChhHHHHhhhhhhcCCC
Q 000167 147 PAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQD 181 (1972)
Q Consensus 147 ~~l~~l~~~l~~fG~~~~-~~k~il~~l~~ll~~~d 181 (1972)
.-++.+..++...|...+ -++.+++.+-..+++++
T Consensus 243 ~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 243 VLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999998644 47888888888887765
No 193
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.93 E-value=4.1e+02 Score=37.06 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc
Q 000167 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL 969 (1972)
Q Consensus 907 sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l 969 (1972)
+|.--+...+.-|+.++..+|..|.+.+-..+-+++.++++..+.|++.|..|+-+|+..|+.
T Consensus 560 Snv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y 622 (1014)
T KOG4524|consen 560 SNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNY 622 (1014)
T ss_pred cchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCC
Confidence 343334566888999999999999999999999999999999999999999999999999975
No 194
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.20 E-value=26 Score=44.62 Aligned_cols=163 Identities=15% Similarity=0.167 Sum_probs=104.1
Q ss_pred CChHHHHHHHHHHHHHhc---CCCCCCC--------ChH--HHHH-HHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhh
Q 000167 297 TKWSERKDAVAELTKLAS---TKRIAPG--------DFT--EVCR-TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362 (1972)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~---~~ki~~~--------~y~--~l~~-~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~ 362 (1972)
..|+ .||++.++..+. +.+|..+ .|+ ++.. .+.+.+.|..+.++..+.-.++.---|-++.
T Consensus 476 gt~s--~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~--- 550 (926)
T COG5116 476 GTWS--VEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNL--- 550 (926)
T ss_pred cCCC--HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc---
Confidence 4564 477777776652 3333221 221 3333 3445556888878777765554433333321
Q ss_pred hhhhHHHHHHHH-hccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh-hcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000167 363 SSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1972)
Q Consensus 363 ~~~~llp~LL~k-lkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l-~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1972)
.++..+|.- ..|.+..||.|+.-||..++-. - .+.+..+.+-| ++-|+.||.+++-.|..+....+.
T Consensus 551 ---~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---D-~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---- 619 (926)
T COG5116 551 ---GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---D-RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---- 619 (926)
T ss_pred ---hhHhhhheeecccCchHHHHHHHHheeeeEec---C-cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----
Confidence 355555555 6899999999998888766432 2 23344444434 588999999999888876665443
Q ss_pred HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
+.....|-.++.|++.-||.+|+-+++.+.....+
T Consensus 620 ---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 620 ---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 34456677788999999999999999887755443
No 195
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.76 E-value=31 Score=45.18 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=100.8
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhc-----hhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHH-h----cC
Q 000167 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTH-----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK-A----GC 398 (1972)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~-----f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~-~----~~ 398 (1972)
.|-..++-.|+.|+..|+.++=.+.-.-+++ ++.....-.--|.+.+.|.-+.||.-+..-+-.++. . ..
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 3444566778889999988877666443333 344455555667788899999999766555444433 2 23
Q ss_pred CChHhHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000167 399 LNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
+.+.+++..|.+.+.+ ....||..+.+-|..++..-. -...++.++|++-..|.|....||-|+...+-.+..+
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 4456777777777764 557999999888887665421 1245688999999999999999999999988766543
No 196
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=70.19 E-value=3.1e+02 Score=34.86 Aligned_cols=171 Identities=19% Similarity=0.135 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHH
Q 000167 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~ 944 (1972)
++--+|..|+.-++.++.-. +.... .-..++.++.....+.+-..+..++.++.+++-.- +.+--++.. +..++..
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG-~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-KGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGG-IRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-CCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCC-HHHHHHH
Confidence 45678999999999999741 11111 12567888888888888889999999988887432 222222222 3566666
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC-----CCChh-HHHH-HHHHHHHHhccCCCC----
Q 000167 945 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA-----KLGAE-GRKD-LFDWLSKQLTGLSGF---- 1007 (1972)
Q Consensus 945 L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~-----~~~~~-~R~~-~l~~L~~~l~~~~~~---- 1007 (1972)
+.|....+.++...++-.++.+-. .+--++.+...+.+. +.+.+ .|.. +...+...+..|+..
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 776544477777777777765532 112233334333321 11121 2433 333455667777652
Q ss_pred CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
.+...-++.++.+|.-++.++|+.--..+-.+
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 12224566688888888888888876555433
No 197
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.74 E-value=34 Score=44.66 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=67.9
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHhc----------C--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCCh
Q 000167 943 KCLGDNKKHMRECTLTVLDAWLAAV----------H--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010 (1972)
Q Consensus 943 ~~L~D~k~~Vr~Aa~~aL~~i~~~~----------~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~ 1010 (1972)
+.|....-.+|-+..+++..++.+. . +..+++.+.+-|.+. +|-.|.-++..+...+.-......-
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~--~py~RtKalqv~~kifdl~sk~~~~ 383 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT--YPYTRTKALQVLEKIFDLNSKTVGR 383 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHhCcccccch
Confidence 3333444445555555544444432 1 334555666667665 6889999999888777654443332
Q ss_pred h-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHH
Q 000167 1011 A-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1049 (1972)
Q Consensus 1011 ~-~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~ 1049 (1972)
. ..+.-+..|+.|++.-||+.|.+.+..+...-++..+.
T Consensus 384 r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h 423 (1128)
T COG5098 384 RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEH 423 (1128)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence 3 34444788999999999999999999988776665443
No 198
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.26 E-value=4.7e+02 Score=36.63 Aligned_cols=194 Identities=16% Similarity=0.113 Sum_probs=131.9
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc-C-CCCCCCChHHHHHHHHHHhc----ccCHHHHHHHHHHHHHHHHHhhhc--hh
Q 000167 290 FWEGVKATKWSERKDAVAELTKLAS-T-KRIAPGDFTEVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTH--FS 361 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~-~-~ki~~~~y~~l~~~L~k~l~----D~N~~V~~~A~~~l~~La~~L~~~--f~ 361 (1972)
|++...+. +.+|+.-+..+++ . +...++-..-+++.|...-. ..|..-...|+..++.|+..|.+. |.
T Consensus 381 i~ed~~sp----~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~ 456 (1010)
T KOG1991|consen 381 IFEDGYSP----DTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK 456 (1010)
T ss_pred hhcccCCC----cHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH
Confidence 44444443 5677777766663 2 33333333334444443222 345666788899999999988754 44
Q ss_pred hhhh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh---cCCChHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcCh
Q 000167 362 GSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSK 436 (1972)
Q Consensus 362 ~~~~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~---~~~~l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~ 436 (1972)
...+ .+++.++--|..+--..|.-+...+..+..- ....+...++....+|. ++.-.||.+++..|..++.....
T Consensus 457 ~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 457 SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 3333 4566677778888889998887777777632 12335677788888888 66678999999999998887764
Q ss_pred h--HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHH
Q 000167 437 A--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDV 491 (1972)
Q Consensus 437 ~--~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~ 491 (1972)
. .+..+++.++..+.+..++-.-+. =..++.++...++++ +.||..+|-..
T Consensus 537 ~~e~~~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseE-lsPfA~eL~q~ 589 (1010)
T KOG1991|consen 537 ADEKVSAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEE-LSPFAVELCQN 589 (1010)
T ss_pred hhhhHhhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHh-hchhHHHHHHH
Confidence 3 366788899999999998887765 455677777788876 77887777544
No 199
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.21 E-value=20 Score=40.63 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=86.2
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHH---cChhh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA---MGPAV 930 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~a---lg~~~ 930 (1972)
+.+.|++++.+.+.--|.-|-+.+.+++.....+|.|-. .+|+..|+..|.-.|..|...+|++|+.|... .|+.+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 345788999999988888899999998886667888875 89999999999999999999999999999864 46788
Q ss_pred HhhhhhHHHHHHHHhC------------CCcHHHHHHHHHHHHHHHHhcC
Q 000167 931 EKSSKGVLSDILKCLG------------DNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 931 ~~~~~~llp~ll~~L~------------D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
-||-+.++|.+- .++ |++-.+-+-...+|..+-.+-|
T Consensus 194 VPfYRQlLp~~n-~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GG 242 (262)
T KOG3961|consen 194 VPFYRQLLPVLN-TFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGG 242 (262)
T ss_pred hhHHHHhhhhhh-hhcccccccccccCccccccHHHHHHHHHHHHHHcCC
Confidence 899999988653 222 2334455555555555544444
No 200
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.35 E-value=21 Score=49.56 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=58.9
Q ss_pred cCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHHhC--HHHHHHhhcCCHHHH
Q 000167 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILG--EDIWRYVGKLTDAQK 1378 (1972)
Q Consensus 1301 ~sKN~r~R~ecl~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G--~~v~~~vg~ls~~~~ 1378 (1972)
+-=-+..|+.|+.+||.-|+.|.-. .-..--|+.|+..++|++..||...+.+|--+|..-- +.+--|+...++.-.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~-Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEI-FLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHH-HhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 3345778999999999999999632 2233357999999999999999999999998887621 234455555555555
Q ss_pred HhH
Q 000167 1379 SML 1381 (1972)
Q Consensus 1379 s~l 1381 (1972)
+|.
T Consensus 376 eMa 378 (1048)
T KOG2011|consen 376 EMA 378 (1048)
T ss_pred HHH
Confidence 554
No 201
>PF05536 Neurochondrin: Neurochondrin
Probab=68.33 E-value=71 Score=42.60 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh-hhhHHHHHHHHhccCcHH
Q 000167 305 AVAELTKLASTKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPT 381 (1972)
Q Consensus 305 aL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~ 381 (1972)
|+.-|..++.-|.+.. .+.-+-++.|.+++. .....++..|++|+..++ .-....... ....+|.|.+.+.. .+.
T Consensus 77 avsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 77 AVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred HHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 4555666666666554 456677888888887 333478999999999999 333333322 23566777776666 566
Q ss_pred HHHHHHHHHHHHHHh-c-------CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-----HHHHhhhhHHH
Q 000167 382 VAESLTQTLQAMHKA-G-------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----AVLKVHKDYVP 448 (1972)
Q Consensus 382 V~~aa~~aL~al~~~-~-------~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~-----~l~~~l~~l~p 448 (1972)
..+.+...+..++.. + ...+..+++.|...+..-.-..|-+.+.+|..++...+.. .-...++.+..
T Consensus 155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 677777777777654 1 0113356666666666555567788999999999887411 11234566666
Q ss_pred HHHHHh-cCCChHHHHHHHHHHHHHHHHhCch
Q 000167 449 ICMECL-NDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 449 ~l~k~l-~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
.+...+ +...+.-|+.|..+...+..++|.+
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 666665 5667889999999999999999965
No 202
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.23 E-value=32 Score=35.99 Aligned_cols=79 Identities=9% Similarity=0.103 Sum_probs=55.9
Q ss_pred ccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHcChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000167 886 KRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDA 962 (1972)
Q Consensus 886 ~~I~~~~~~eL~~~L~~~L~D-sN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~Aa~~aL~~ 962 (1972)
.++..+. .+++..|.+.|.. .+..+..-||.-|+.++..... -...+.. .=..|+..+.+.++.||..|..|+..
T Consensus 35 ~kf~~~~-~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 35 DKFEENN-FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp GGGSSGG-GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHcc-cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4566665 7889999999843 4777888899999999987632 2222222 33567788888999999999999888
Q ss_pred HHHh
Q 000167 963 WLAA 966 (1972)
Q Consensus 963 i~~~ 966 (1972)
++.+
T Consensus 113 lm~~ 116 (119)
T PF11698_consen 113 LMVN 116 (119)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 203
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.70 E-value=55 Score=39.86 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=109.6
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc---CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhh
Q 000167 290 FWEGVKATKWSERKDAVAELTKLAS---TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~---~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 366 (1972)
+.+.+.+.+-..|.-+...|..|+- +.|+....-..+++.|...+.|...+|...|..+++.|+..-.-..+-.-..
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag 292 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAG 292 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcC
Confidence 3344444444444444444444331 2222222223488899999998888898888888888876433221211223
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHh-c-CCCh--HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhc--ChhHH
Q 000167 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKA-G-CLNL--VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETS--SKAAV 439 (1972)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~al~~~-~-~~~l--~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~--~~~~l 439 (1972)
-+|.+++.+.+.--...-+-..|+..+.-+ + ...+ ..++..+..-|. ..|-.++-.+...|..+.... ....+
T Consensus 293 ~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i 372 (550)
T KOG4224|consen 293 SLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVI 372 (550)
T ss_pred CchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHH
Confidence 478888989888777777777888877655 0 0000 112333555555 345557776666666655432 22222
Q ss_pred HHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 440 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
. =.-.+|.+..++-|+.-+||..-..|+..+.
T Consensus 373 ~--esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 373 R--ESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred h--hcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 1 1345788999999999999999888887654
No 204
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=67.65 E-value=3.2e+02 Score=34.11 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=61.8
Q ss_pred HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhCh-hHHh
Q 000167 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKG 796 (1972)
Q Consensus 718 vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~-~l~~ 796 (1972)
+++.+.+.+.+-.|..+....+..|..-+..++.. ..+.+++++.+ |+.+..+.||.+-...++.++...+. ....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~--~~~~~~~~~~k-Gl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE--LPKKVVDAFKK-GLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC--CCHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 44444455444456665655555555555544321 23678999988 69999999999999999998762221 2445
Q ss_pred hhhcccHHHHHHHHHHHhc
Q 000167 797 FLADVKPALLSALDAEYEK 815 (1972)
Q Consensus 797 ~L~~lkp~ll~~Le~efek 815 (1972)
+...+-|.+.+.+++-+.+
T Consensus 100 ~~~~~~~~L~~~~~~~~~~ 118 (339)
T PF12074_consen 100 FAEPFLPKLLQSLKEASAN 118 (339)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 6667777777777765543
No 205
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.19 E-value=28 Score=36.38 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=46.8
Q ss_pred hHHHHHHHHh-hcCChHHHHHHHHHHHHHHHhcChh--HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 403 DVVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 403 ~il~~l~~~l-~~Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.++..|...| ++.++.+-.-+|.=|..++..+|.. .+.+ -..-..++.+|++.|++||..|..|+..+|.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~--lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK--LGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH--HSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh--cChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3555555555 2446666667777788877777543 2211 1234578899999999999999999998875
No 206
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=65.61 E-value=2.7e+02 Score=37.05 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHH---HhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHH
Q 000167 339 IAVAVEAIQAIGNLAR---GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVK 409 (1972)
Q Consensus 339 ~~V~~~A~~~l~~La~---~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~------~il~~l~ 409 (1972)
...++.||.|+..++. .|+..|.. ..+..+|+..+-+....|..++..|+..++-. -.++. ..++.+.
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVme-fs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVME-FSNLKSKFLRNNGIDILE 467 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhh-cccHHHHHHHcCcHHHHH
Confidence 3468888888877775 67777542 34555566666788888888888888887754 12332 2467777
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 410 TSVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 410 ~~l~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
..+.++.+.+|..++.+|...+=.+.... +..+-+--...+....+|.+.+|.+.++..|--+.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 78889999999999999988776654332 22333445566778889999999999988886654
No 207
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=64.42 E-value=76 Score=37.72 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=62.1
Q ss_pred CcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCc------cchHHHHHHHHHHHHHHHHHcC
Q 000167 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS------EKNVQVQQQVIEVINYLAATAT 675 (1972)
Q Consensus 602 l~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~------DsN~qV~~~~Le~l~~l~~~~~ 675 (1972)
|..-+-+.+..++-..|.+|++.|..- .-..-++.+|.. -|+ =+|.+++...+.....+..+-.
T Consensus 199 F~kvisal~dEs~~~~r~aAl~sLr~d--------sGlhQLvPYFi~--f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~ 268 (450)
T COG5095 199 FDKVISALLDESDEQTRDAALESLRND--------SGLHQLVPYFIH--FFNEQITKNLKNLEKLTTVVMMYSSLLKNKY 268 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC--------ccHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHhcCCc
Confidence 333334445667888899999877621 112223333221 122 2466677777777777777655
Q ss_pred CCchhhHHHHHHHHHh-----hhcch-h------hhHHHHHHHHHHHhhcChh
Q 000167 676 KFPKKCVVLCLLGISE-----RVADI-K------TRAHAMKCLTTFSEAVGPG 716 (1972)
Q Consensus 676 ~~~~~~~~~il~~Lve-----Klgd~-K------~r~~a~~~L~~l~e~~~~~ 716 (1972)
-|...++..++|.|+. |+|+. + +|+.|...|.-++..++..
T Consensus 269 iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 269 IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 5666666666665543 56552 2 5888888888887776643
No 208
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.74 E-value=1e+03 Score=38.32 Aligned_cols=169 Identities=12% Similarity=0.075 Sum_probs=92.2
Q ss_pred CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 000167 753 HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1972)
Q Consensus 753 ~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~ 832 (1972)
.++..-+++.+... +.+.|..++.++..++..++...-..+.+-....
T Consensus 979 ~lD~~i~ldal~~~-l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~------------------------------- 1026 (3550)
T KOG0889|consen 979 MLDPSTFLDALVES-LSHENSEMRPAGVRALKVIFSTSTLILGSPERAF------------------------------- 1026 (3550)
T ss_pred ccCHHHHHHHHHHH-HhccchhhhhhHHHHHHHHHHHHHHhhcCcchhh-------------------------------
Confidence 35667788888876 9999999999999998877654321111000000
Q ss_pred ccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCC-CChhhHHHHHHhccccchHHH
Q 000167 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNL 911 (1972)
Q Consensus 833 ~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~-~~~~eL~~~L~~~L~DsN~~V 911 (1972)
...+...|-+.++..+-++.|.-|..|...|.-++..-+ ...- ..+.+++.++.-++.|.-..+
T Consensus 1027 --------------~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~-~~~l~d~~~d~~~~l~fvl~d~~~e~ 1091 (3550)
T KOG0889|consen 1027 --------------KLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP-SLWLLDFQVDILKALFFVLKDTESEV 1091 (3550)
T ss_pred --------------ccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch-HHHHHHHHHHHhhhHHHhhcCCcccc
Confidence 011233344455555666666666666655555554321 0000 012334444444443321111
Q ss_pred ----HHHHHHHHHH----HHHHcChhh--HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000167 912 ----VMATLITLGA----VASAMGPAV--EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 912 ----~~~Al~~l~~----La~alg~~~--~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
...+-.++-. +....+..- ......++..+..-|-+.+..||+.+..+|..+++..|
T Consensus 1092 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~ 1158 (3550)
T KOG0889|consen 1092 SSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSG 1158 (3550)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcC
Confidence 1122122211 122221111 13455677778888889999999999999999999986
No 209
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=61.87 E-value=25 Score=41.98 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=69.3
Q ss_pred HHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh----hhhHHHHHHHHhcCCCh
Q 000167 386 LTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV----HKDYVPICMECLNDGTP 459 (1972)
Q Consensus 386 a~~aL~al~~~--~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~----l~~l~p~l~k~l~Ds~~ 459 (1972)
...||..+++. +..-...+++++-.+|.+....||.-++.-+.++++.++....... -..+.|.++.|+...+-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 44556666654 2222357889999999999999999999999999999986544432 25688999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000167 460 EVRDAAFSVLAAIAK 474 (1972)
Q Consensus 460 ~VR~aA~~~l~~l~~ 474 (1972)
+|-++|.+.+..+..
T Consensus 143 eVAkAAiesikrial 157 (524)
T KOG4413|consen 143 EVAKAAIESIKRIAL 157 (524)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988876653
No 210
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.60 E-value=60 Score=43.11 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=87.3
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH-hccCcHHHHHHHHHHHHHHHHhcCCChHhHHHH
Q 000167 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 407 (1972)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k-lkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~ 407 (1972)
.+++.+.|.++.++..++-.++.--.|-++. . .+..||.- ..|.+-.||.+|..||-.++-. .++. ++.
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgnn--k----air~lLh~aVsD~nDDVrRaAVialGFVl~~---dp~~-~~s 592 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGNN--K----AIRRLLHVAVSDVNDDVRRAAVIALGFVLFR---DPEQ-LPS 592 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCch--h----hHHHhhcccccccchHHHHHHHHHheeeEec---Chhh-chH
Confidence 3445566888888887765554433333322 2 23333333 4688999999998888876532 2333 344
Q ss_pred HHHHh-hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000167 408 VKTSV-KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 408 l~~~l-~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
+..-| ++-||-||-+++-.|..+...++- +..+..|-..+.|+..=||..|.=+++.++-..-
T Consensus 593 ~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 593 TVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred HHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 44444 488999999999888877665542 3445556666789999999999999998885544
No 211
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=61.27 E-value=1e+02 Score=41.18 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=107.4
Q ss_pred CCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Q 000167 318 IAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHK 395 (1972)
Q Consensus 318 i~~~~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k-lkdkk~~V~~aa~~aL~al~~ 395 (1972)
..++++ ..+++.|...++|.-++|...+++.+..+++-+.-. -.-..++|.|-.. ++..+..|+..+..|+..+++
T Consensus 381 t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~--~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q 458 (700)
T KOG2137|consen 381 TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP--FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ 458 (700)
T ss_pred CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH--HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH
Confidence 334443 578899999999999999999999999999988733 3344567766655 478888999999999998887
Q ss_pred hcC--CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 396 AGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 396 ~~~--~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
. + ...-+.+..|..+.+...|.+...++....+++-..... .+ ....++|.+....-... -+ +..+
T Consensus 459 ~-lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev--~~~~VlPlli~ls~~~~-----L~---~~Qy 527 (700)
T KOG2137|consen 459 R-LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV--MAENVLPLLIPLSVAPS-----LN---GEQY 527 (700)
T ss_pred H-HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee--ehhhhhhhhhhhhhccc-----cc---HHHH
Confidence 5 2 122233444556667788999999999988887665442 11 12444554444332211 12 2222
Q ss_pred HHHhCchhHHHhHhhccHHHHHHHHHH
Q 000167 473 AKSVGMRPLERSIEKLDDVRRNKLSEM 499 (1972)
Q Consensus 473 ~~~~ge~~~~~~l~~Ld~~~~kkI~e~ 499 (1972)
.+++. .++.+++.+++.+.+|+...
T Consensus 528 ~~~m~--~i~~ml~~ie~~~~~kLq~~ 552 (700)
T KOG2137|consen 528 NKYMS--EIRLMLSAIEKPRANKLQKQ 552 (700)
T ss_pred HHHHH--HHHHHHhhhhHHHHHHhhhc
Confidence 23332 24556666666666666553
No 212
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=61.10 E-value=51 Score=33.92 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhc
Q 000167 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1972)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~L 488 (1972)
+...-|..++.-+..++.-.+ +.+...++.++-.|..+|+ .++.|+.|.+|...+.+.+.++.+.++++..
T Consensus 27 ~~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~ 97 (107)
T smart00802 27 KPYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQI 97 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344668888888888888554 4466677888888888887 6689999999999999999998888887764
No 213
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=60.26 E-value=8.9 Score=32.29 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHH
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVL 469 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l 469 (1972)
+.+...+.+.+.|+++.||++|.+.+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888999999999999999998753
No 214
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=60.01 E-value=59 Score=40.27 Aligned_cols=134 Identities=13% Similarity=0.167 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHH-Hhccc--CHHH--HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHH
Q 000167 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKK-LITDV--NIAV--AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1972)
Q Consensus 301 eR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k-~l~D~--N~~V--~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (1972)
.|+|-|+-+...++ .+.... -...+++.|.. ++.|= |+.. ..+.+.++..+.+.++..+.+++..++..+++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 46777777766553 221100 12233333333 33321 1111 345588999999999998888888888777776
Q ss_pred hcc-------CcHHHHHHHHHHHHHHHHhcCCC---------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000167 375 LKE-------KKPTVAESLTQTLQAMHKAGCLN---------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1972)
Q Consensus 375 lkd-------kk~~V~~aa~~aL~al~~~~~~~---------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (1972)
.-+ .-|..|.+-..-|.++..+ |.. +..+++.+.-|++|.+..+-..+++.+..++.....
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEH-CFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHH-HTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 321 4588999998988888876 321 345778888899999999999999999998876544
No 215
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.67 E-value=1.1e+02 Score=40.43 Aligned_cols=104 Identities=14% Similarity=0.232 Sum_probs=75.6
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhh------hchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---hHh
Q 000167 333 LITDVNIAVAVEAIQAIGNLARGLR------THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---LVD 403 (1972)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~------~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~---l~~ 403 (1972)
.+......++-.-+.+++.+...+. ..+.+.+..++..+.++|.|..+-+|..+...+..++.-++.. =..
T Consensus 307 LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e 386 (1128)
T COG5098 307 LLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE 386 (1128)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH
Confidence 3443444444333445555544433 3344567788999999999999999998888888888752222 246
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000167 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1972)
Q Consensus 404 il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (1972)
+...+...+++++.-||..+...+..++-+||=
T Consensus 387 v~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 387 VIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 788888999999999999999999999988863
No 216
>PF05536 Neurochondrin: Neurochondrin
Probab=58.83 E-value=5.9e+02 Score=34.15 Aligned_cols=151 Identities=18% Similarity=0.147 Sum_probs=97.2
Q ss_pred hhhHHHHHHhccccch-HHHHHHHHHHHHHHHHHcChhhHhhhh-hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--
Q 000167 893 TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-- 968 (1972)
Q Consensus 893 ~~eL~~~L~~~L~DsN-~~V~~~Al~~l~~La~alg~~~~~~~~-~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-- 968 (1972)
+-+.++.|.+.+.... ..++..++.++..|+ +...+...++. ..++.+.+.+.+ .+...+.|...+..++...+
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchh
Confidence 3455666666664433 478889999999998 44444444433 466677776666 66677777777777776655
Q ss_pred --------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-------CCChhhhHHH-HHhhcC-CCCHHHHHH
Q 000167 969 --------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-------FPDAAHLLKP-ASIAMT-DKSSDVRKA 1031 (1972)
Q Consensus 969 --------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~-------~~~~~~ll~p-l~~~L~-D~~~dVR~a 1031 (1972)
+..+++.+...+... .-..|-++|.+|..++...+. .+.+...+.. +...+. --.+.-|..
T Consensus 174 ~~~~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 174 SWAEDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 224455555555532 234689999999999987741 1223333333 444554 446677889
Q ss_pred HHHHHHHHHHHcChhH
Q 000167 1032 AEACIVEILRAGGQET 1047 (1972)
Q Consensus 1032 A~~~l~~l~~~~G~~~ 1047 (1972)
|-.+...++.+.|.+-
T Consensus 252 al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 252 ALNLAASLLDLLGPEW 267 (543)
T ss_pred HHHHHHHHHHHhChHh
Confidence 9888888888888764
No 217
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=58.73 E-value=65 Score=33.15 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=53.4
Q ss_pred hhHHHHHHhccccch--HH--HHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc
Q 000167 894 GELFGGLRGRLYDSN--KN--LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL 969 (1972)
Q Consensus 894 ~eL~~~L~~~L~DsN--~~--V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l 969 (1972)
-.++..+...+.|.. +. -...+++.++.|.+.+|+....+...+...+...|. .+..|..|..|-..++.++..
T Consensus 10 LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 10 LGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCH
Confidence 345555666666665 32 367889999999998876655555555555555554 556999999999999999874
Q ss_pred hh
Q 000167 970 DK 971 (1972)
Q Consensus 970 ~~ 971 (1972)
+.
T Consensus 88 ~~ 89 (107)
T smart00802 88 EE 89 (107)
T ss_pred HH
Confidence 44
No 218
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=58.18 E-value=73 Score=32.75 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=49.3
Q ss_pred hHHHHHHhcccc----chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHhcC
Q 000167 895 ELFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD--NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 895 eL~~~L~~~L~D----sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D--~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.++..+...+.| ....-...+++.++.+.+..|+. +..+.|.+..+|.. ..+.+|..+..|-+.++..++
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~----i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSH----ISSARPQIMACLQSALEIPELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCC
Confidence 344445555555 33445678899999999854444 44455555555542 223899999999999999998
Q ss_pred chhhHH
Q 000167 969 LDKMVP 974 (1972)
Q Consensus 969 l~~ll~ 974 (1972)
.+.+-|
T Consensus 87 ~~~l~~ 92 (107)
T PF08064_consen 87 EEDLGP 92 (107)
T ss_pred HHHHHH
Confidence 544433
No 219
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=57.39 E-value=80 Score=34.73 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=38.1
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCC----CCCCCChHHHHHHHHHHhc
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTK----RIAPGDFTEVCRTLKKLIT 335 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~----ki~~~~y~~l~~~L~k~l~ 335 (1972)
+....+.+.|=++|.+|++.|..+++.+ .+....|..++.+|.+.+.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHH
Confidence 3566789999999999999999988643 3555689999999987654
No 220
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=56.91 E-value=97 Score=35.61 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh--cCChH
Q 000167 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK--NKVPL 418 (1972)
Q Consensus 341 V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~--~Knp~ 418 (1972)
+-...+++++.+...+|....++...++..|-+.-.+..-..++.+..|+.+.+.. .+++.++..+=-.+. ++...
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~a--mGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRA--MGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH--CCHHHHHHHCCCCccCCCcCCc
Confidence 45566899999999999998888888888888877777778899999999999986 788888876543333 23333
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHH
Q 000167 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICM 451 (1972)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~ 451 (1972)
-|.-.+-.|...+... .+.-+...++|...
T Consensus 94 ~raWLLPlLr~~i~~~---~L~fF~~~~lPla~ 123 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA---SLSFFVEEFLPLAR 123 (198)
T ss_pred ccchhHHHHHHhccCC---ChHHHHHHHHHHHH
Confidence 4433444444433332 23333455555444
No 221
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=56.16 E-value=1.5e+02 Score=39.88 Aligned_cols=147 Identities=17% Similarity=0.249 Sum_probs=105.3
Q ss_pred ChH-HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000167 322 DFT-EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (1972)
Q Consensus 322 ~y~-~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~ 399 (1972)
+|. .++..|+.+++ -.+..+...-++=...|.+.+... .....++|-|...+++.-..+++.+...+-.+... .
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~--i 420 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAES--I 420 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh--c
Confidence 453 56677777776 444444444445555556655443 45678999999999999999999999988888876 2
Q ss_pred Ch----HhHHHHHHH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 400 NL----VDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 400 ~l----~~il~~l~~-~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.+ ..|+|.|.. ++++-+..+|..++..+..+++.+++... -+.+..+.+|+.=.+|.+--.....+..++-
T Consensus 421 D~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v----~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 421 DVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV----LDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred cHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 22 357777764 56788999999999999999987766544 3345567788888888887777777776664
Q ss_pred Hh
Q 000167 475 SV 476 (1972)
Q Consensus 475 ~~ 476 (1972)
..
T Consensus 497 ~~ 498 (700)
T KOG2137|consen 497 II 498 (700)
T ss_pred hc
Confidence 43
No 222
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=55.23 E-value=1.4e+02 Score=37.20 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=70.3
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHh
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~-Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
..-.+++..|..-|+|++|.|-..++..+..|+.+|++..-. =+...+...|..+++ -+++.|++.-+..+......+
T Consensus 41 ~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 344678888888899999999999999999999999875322 234667788888887 788999999999998888877
Q ss_pred CchhHHHhHhhc
Q 000167 477 GMRPLERSIEKL 488 (1972)
Q Consensus 477 ge~~~~~~l~~L 488 (1972)
..+.--.++..|
T Consensus 121 K~Dp~lsLi~~l 132 (462)
T KOG2199|consen 121 KKDPSLSLISAL 132 (462)
T ss_pred ccCcchhHHHHH
Confidence 765444455544
No 223
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=55.16 E-value=40 Score=35.27 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=60.3
Q ss_pred cccHHHHHhhhc-CCChhhHHHHHHHHHHHHHhhCCCcccccchH-HHHHhhhcCCchHHHHHHHHHHHHHHHHh-C---
Q 000167 1290 TKTLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKIL-G--- 1363 (1972)
Q Consensus 1290 skvf~~l~~gl~-sKN~r~R~ecl~~l~~li~~~G~~~~~~~k~l-~~ia~~i~drd~~VR~aAl~~l~~~y~~~-G--- 1363 (1972)
.+++|++.+|++ ++++..|+.|.-.++.+..+..++.. -..++ +.|++.....+. ...|+.||+.+|... +
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-VLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-HHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 468899999998 99999999999999999988887631 12233 556555554444 577999999999777 3
Q ss_pred --HHHHHHhhcCCH
Q 000167 1364 --EDIWRYVGKLTD 1375 (1972)
Q Consensus 1364 --~~v~~~vg~ls~ 1375 (1972)
+++++.+-.++.
T Consensus 82 lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 82 LPRKVFKALLKLPD 95 (121)
T ss_pred CCHHHHHHHHcCcc
Confidence 235666655554
No 224
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=54.58 E-value=4.8e+02 Score=31.82 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=87.4
Q ss_pred cHHHHHhhhcCChHHHHHHHHHHHHHHHhccccch-hHHH-----HHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ-SVEI-----LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~-~~~~-----lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
.+++-.+|.+.+--.+.-+...+..++++.+..+. .... ++..+.. .+..+|..|.+++.+.+..++-.-..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklild--cIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILD--CIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHH--HHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 36777788888888888888888888887553221 1111 1111111 24556778899999988877642100
Q ss_pred ----CchhhH-HHHHHHHHhhhcchhhhHHHHHHHHHHHhhcC--h--------hHHHHHHHHhhhhCCChHHHHHHHHH
Q 000167 677 ----FPKKCV-VLCLLGISERVADIKTRAHAMKCLTTFSEAVG--P--------GFIFERLYKIMKDHKNPKVLSEGILW 741 (1972)
Q Consensus 677 ----~~~~~~-~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~--~--------~~vl~~l~~~l~~~KnpKv~~e~l~~ 741 (1972)
|..... ..=+-.|..|+.|. .|- .++..+.|.++ | .-++..+...+...+..-|+.-|++.
T Consensus 162 leaiFeSellDdlhlrnlaakcndi-aRv---RVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciEl 237 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDI-ARV---RVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIEL 237 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhH-HHH---HHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHH
Confidence 000000 00011122222221 111 13334444322 2 12455566666667889999999999
Q ss_pred HHHHHH-HhCCCCCChhhHHHHHHhc
Q 000167 742 MVSAVE-DFGVSHLKLKDLIDFCKDT 766 (1972)
Q Consensus 742 L~~~i~-~fG~~~l~~k~li~~l~~~ 766 (1972)
..++.+ ++|...+.-..+|+.+...
T Consensus 238 vteLaeteHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 238 VTELAETEHGREFLAQEGLIDLICNI 263 (524)
T ss_pred HHHHHHHhhhhhhcchhhHHHHHHHH
Confidence 888876 5676656666777776443
No 225
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.14 E-value=8.9e+02 Score=34.81 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=93.3
Q ss_pred hhhHHHHHHhcc----ccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhc
Q 000167 893 TGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAV 967 (1972)
Q Consensus 893 ~~eL~~~L~~~L----~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~ 967 (1972)
++.+.+.+.... --+|..+...|--+++.+..-- ..|+..=+|.++..+. ...+.||.-+..++..++-..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS----a~fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS----AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 355555554443 1234667777766666554322 2455555677777665 677889999999999888776
Q ss_pred C--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000167 968 H--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 968 ~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
+ ++.+-+.+...|.+. ++.+|..++-.|.-.+-+--- .++-.+.-...||.|.+++||.-|...+..+-
T Consensus 993 pnlie~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndmi--KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDMI--KVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccccchhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhhh--HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 5 688888999999887 799999998887654432100 01122333667999999999999995555443
No 226
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=53.62 E-value=1.1e+02 Score=38.33 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=115.6
Q ss_pred ccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccch---hHHHH---HHHHhcCCCCccchHHHHHHHHHHHHHHHHH
Q 000167 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ---SVEIL---VRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 673 (1972)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~---~~~~l---v~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~ 673 (1972)
+.+++-+.+....+.|-.|..++..+.+.+-.+.-... ..+.+ +..+. ..++|-...+.++.|+.+..++..
T Consensus 392 dslddileaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiR--eaIddisaekfqasfelikciiah 469 (666)
T KOG4825|consen 392 DSLDDILEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIR--EAIDDISAEKFQASFELIKCIIAH 469 (666)
T ss_pred hhhhhHHHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888999999999888877654321110 01111 11111 023455566778888887776665
Q ss_pred c---CCCchh----hHHHHHHHHHhhhcch--hhhHHHHH---HHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHH
Q 000167 674 A---TKFPKK----CVVLCLLGISERVADI--KTRAHAMK---CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 741 (1972)
Q Consensus 674 ~---~~~~~~----~~~~il~~LveKlgd~--K~r~~a~~---~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~ 741 (1972)
+ +.|+.. |+..-++.+.-.-||. +++..|.+ .|-.+.+.-..+.|-+.|..++..+|.|-+...-...
T Consensus 470 likehkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggk 549 (666)
T KOG4825|consen 470 LIKEHKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGK 549 (666)
T ss_pred HcchhhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHH
Confidence 4 234422 3344445555556663 45555544 4444455556667777777777778888887766677
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHhcC---CCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccH
Q 000167 742 MVSAVEDFGVSHLKLKDLIDFCKDTG---LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803 (1972)
Q Consensus 742 L~~~i~~fG~~~l~~k~li~~l~~~g---L~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp 803 (1972)
|..++...|...-- -++..+++.| ..+.--.+|.+|...++.+|+.-. .+...++|.|
T Consensus 550 LarllkdlgkGrag--fiediakkfgVpaeehglndkreaafaiicdmtrdhQ--arsIgedLmp 610 (666)
T KOG4825|consen 550 LARLLKDLGKGRAG--FIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTRDHQ--ARSIGEDLMP 610 (666)
T ss_pred HHHHHHhcCCCccc--hhHHHHHHhCCCccccchhHHHHhHhhhhhhhcccHH--HHHHHhhcCc
Confidence 77788877653110 0122222222 455556899999999999986432 3333444444
No 227
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=53.34 E-value=8.3e+02 Score=34.21 Aligned_cols=181 Identities=18% Similarity=0.187 Sum_probs=110.9
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHH------------------
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT------------------ 915 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~A------------------ 915 (1972)
+..-++..+-|+.-.+|..|+..+.+++.-...+. . +.++.++..--.|.-..++..+
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~---~-~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt 548 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE---A-FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT 548 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc---h-HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch
Confidence 44556778899999999999999988886211100 0 1111111111111111111100
Q ss_pred --H----HHHHHHH-HHcChhhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh---cCC
Q 000167 916 --L----ITLGAVA-SAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT---DAK 984 (1972)
Q Consensus 916 --l----~~l~~La-~alg~~~~~~~~~llp~ll~~L~-D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~---~~~ 984 (1972)
+ +++...- +-+++.-..+-+.++--++..+. |.|.+|+.+|...+..+..+|....++|..+-.|+ ...
T Consensus 549 ~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~ 628 (1529)
T KOG0413|consen 549 DLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDR 628 (1529)
T ss_pred hhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCc
Confidence 0 1111111 12333323445566777788887 99999999999999999999998888886444443 222
Q ss_pred CChhHHHHHHHHHHHHhccCCCCC-ChhhhHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 985 LGAEGRKDLFDWLSKQLTGLSGFP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 985 ~~~~~R~~~l~~L~~~l~~~~~~~-~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
. .-+|...++-|.+.+-.-+... --..++..++..++|...+|-+.|.+.+..+
T Consensus 629 ~-vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 629 M-VSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred c-hHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 2 3468888888887665444322 2245677788888999999999999865544
No 228
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=53.18 E-value=43 Score=37.31 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh
Q 000167 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (1972)
Q Consensus 868 k~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L 945 (1972)
..|+.|.+.+..++..+..++ +..+++..+...|+| ...|+..++.++..++......+.+.+..++.++-..|
T Consensus 42 elRK~ayE~lytlLd~~~~~~---~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI---DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 479999999999998543333 257889999999999 88999999999999987655555555666665555444
No 229
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=52.60 E-value=3.4e+02 Score=33.65 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHhccCcHHHHHH-HHHHHHHHHHh-c---CCChHhHHHHHHHHh----h---cCChHHHHHHHHHHHHHH
Q 000167 364 SRFLLPVLLEKLKEKKPTVAES-LTQTLQAMHKA-G---CLNLVDVVEDVKTSV----K---NKVPLVRSLTLNWVTFCI 431 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~a-a~~aL~al~~~-~---~~~l~~il~~l~~~l----~---~Knp~vR~~~l~~L~~~l 431 (1972)
++.++.++|.-..+..+..|++ +-.++.+++.. + ..-+..|++.+.... . +.-|..|.+-..+|..+.
T Consensus 69 i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~ 148 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAIN 148 (319)
T ss_dssp HHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHH
Confidence 3334444444455555555542 33344444443 1 233455555554322 1 356999999999999999
Q ss_pred HhcChhHHH---HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 432 ETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 432 ~~~~~~~l~---~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
+.+....+. ...+.++..+.-++.+.+.+|-+.|.+++..+..-+..
T Consensus 149 ~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 149 EHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 987655332 45688999999999999999999999999998877665
No 230
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=50.84 E-value=1.8e+02 Score=34.86 Aligned_cols=111 Identities=21% Similarity=0.343 Sum_probs=70.6
Q ss_pred HhhhHHHHHhhcCccHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHhhcCc---chHHHHHHHhhHHHHHHHHHhc
Q 000167 1169 KYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKS---NTTCLLKVLEFLPELFDTLRDE 1245 (1972)
Q Consensus 1169 ~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dt---N~~vl~k~Ld~l~~l~~~l~~~ 1245 (1972)
-+|.+-+.+++-.+|-+.|-+|++.|... +-+..++-||.-.|.|. |-+=+ ..|-.+-++.-.|-++
T Consensus 197 ~YF~kvisal~dEs~~~~r~aAl~sLr~d---------sGlhQLvPYFi~f~~eqit~Nl~nl-~~LtTv~~m~~sLL~N 266 (450)
T COG5095 197 MYFDKVISALLDESDEQTRDAALESLRND---------SGLHQLVPYFIHFFNEQITKNLKNL-EKLTTVVMMYSSLLKN 266 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC---------ccHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhcC
Confidence 46777666777778888888899888654 22444556665555553 22222 2233344455567788
Q ss_pred CCCCCHHHHHhhhhHHH----H-hhCC-ChH----HHHHHHHHHHHHHhhcCCc
Q 000167 1246 GYSLTESEAAVFLPCLV----E-KSGH-NIE----KVREKMRELTKQIVNFYSA 1289 (1972)
Q Consensus 1246 ~y~l~~~Ea~~~lp~L~----~-K~Gd-~k~----~vr~~v~~il~~~~~v~~~ 1289 (1972)
.|.|-|-..-.++|.++ . |+|. ++| .+|.-...+++-++.-||.
T Consensus 267 ~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 267 KYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred CceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH
Confidence 99999988888888764 3 6665 555 4777766677666665554
No 231
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=49.34 E-value=23 Score=29.81 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=28.1
Q ss_pred hCCCccChhHHHHhhhhhhcCCChhHHHHHHHHH
Q 000167 159 FGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192 (1972)
Q Consensus 159 fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~ 192 (1972)
..+.++.-..+++.+..-|.|.++.||++|.+++
T Consensus 9 ~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 9 KDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred cCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4455666778999999999999999999998763
No 232
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=49.32 E-value=1.8e+02 Score=36.53 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=65.6
Q ss_pred HHHHhhcCccHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHH
Q 000167 1174 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 1253 (1972)
Q Consensus 1174 ~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~E 1253 (1972)
.+++.|.+.+...|.+|++.|... ..+-..+=-+++|++-...-+..+ -...|.++-.++..|..+.+-.-+..
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~tD-----~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRTD-----PGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhccC-----CCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 566677778899999999988654 111122222334443322111111 22334455556667788887777888
Q ss_pred HHhhhhHHHHhh-----C-----CChHHHHHHHHHHHHHHhhcCCcc
Q 000167 1254 AAVFLPCLVEKS-----G-----HNIEKVREKMRELTKQIVNFYSAT 1290 (1972)
Q Consensus 1254 a~~~lp~L~~K~-----G-----d~k~~vr~~v~~il~~~~~v~~~s 1290 (1972)
.-.|+|.++.-+ | +.--.+|+---.++..+|.-|..+
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 888999887655 2 233456666666666666665543
No 233
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=49.27 E-value=25 Score=29.04 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 445 DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
-.+|.|+++|.+.+++||..|.-+++.+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999998764
No 234
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=48.54 E-value=1e+03 Score=33.77 Aligned_cols=161 Identities=15% Similarity=0.172 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhhccCCCCchhHH---hhhhhhH----hhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhH-HHHHHHHH
Q 000167 29 NEANIDLAALCDSITDPKDNRIR---ELGPLFK----KTVADSNAPVQDKALDALIAYLKAADADAGRYAK-EVCDAIAA 100 (1972)
Q Consensus 29 ~~ayeel~~~~~~~~d~~~~~~~---~~~~~~~----k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~-~v~~~Lve 100 (1972)
+.|++.|.+.+...+|- ...|. ...+.|+ -+-....+++|..+|+.+...-.+..- ....+. .++..|..
T Consensus 1743 ~m~LtAL~Nli~~nPdl-asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C-v~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDL-ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC-VTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHhhCcch-hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH-HHHHHhhhHHHHHHH
Confidence 46777777777665542 11221 1222222 234577889999999987665444321 222211 23444443
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHH--------HHh-hcCChhhHHHHHHHHHHHHH--HhCCCccChhHH
Q 000167 101 KCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVME--------KAI-KNKVAKAVVPAIDVMFQALS--EFGAKIIPPKRI 169 (1972)
Q Consensus 101 K~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~--------~~~-~~KnpKv~~~~l~~l~~~l~--~fG~~~~~~k~i 169 (1972)
.|.+-|..|+.+.+.+-.+. .+++...+++. ..| ....+.+++++...+..+.. ..|+++- -.+
T Consensus 1821 -lLHS~PS~R~~vL~vLYAL~--S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~--ITL 1895 (2235)
T KOG1789|consen 1821 -LLHSQPSMRARVLDVLYALS--SNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVT--ITL 1895 (2235)
T ss_pred -HHhcChHHHHHHHHHHHHHh--cCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCcee--eeh
Confidence 36678999999998876654 33443444432 222 34457788888877776554 4777641 246
Q ss_pred HHhhhhhhcCCChhHHHHHHHHHHHHHHhhC
Q 000167 170 LKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (1972)
Q Consensus 170 l~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (1972)
++.||..|-+ ..|+.- ...+.++.-..
T Consensus 1896 ~kFLP~~f~d---~~RD~P-EAaVH~fE~T~ 1922 (2235)
T KOG1789|consen 1896 IKFLPEIFAD---SLRDSP-EAAVHMFESTS 1922 (2235)
T ss_pred HHhchHHHHH---HHhcCH-HHHHHHHhccC
Confidence 6777777765 334433 33444454443
No 235
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=48.18 E-value=1.6e+02 Score=36.82 Aligned_cols=94 Identities=18% Similarity=0.047 Sum_probs=61.4
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc-CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHH----hcChhHHH
Q 000167 367 LLPVLLEKL-KEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TSSKAAVL 440 (1972)
Q Consensus 367 llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~-~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~----~~~~~~l~ 440 (1972)
++..++..+ ||.+..+..++..++..++.+. ..-.+.+++.+..++++|.+.+|..-+..+..++. ........
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~ 102 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAE 102 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHH
Confidence 333333333 6888888888888888777652 23457889999999999999999998888888876 11122222
Q ss_pred HhhhhHHHHHHHHhcCCChH
Q 000167 441 KVHKDYVPICMECLNDGTPE 460 (1972)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~ 460 (1972)
..++.+...+.++...+.+.
T Consensus 103 ~~~~~L~~~~~~~~~~p~~~ 122 (339)
T PF12074_consen 103 PFLPKLLQSLKEASANPLQS 122 (339)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 34444444554555555443
No 236
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.71 E-value=4.5e+02 Score=32.33 Aligned_cols=175 Identities=13% Similarity=0.159 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHHHHh-cCCCCCCC-ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh---hhchhhhhhhHHHHH
Q 000167 297 TKWSERKDAVAELTKLA-STKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---RTHFSGSSRFLLPVL 371 (1972)
Q Consensus 297 ~kWkeR~eaL~~L~~l~-~~~ki~~~-~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L---~~~f~~~~~~llp~L 371 (1972)
.+-..=+.+|+.|..+. +.|++... ...-++..|..-..|... --.+++|+..-|.+- |..|-. -.++|-|
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dl--t~~~~~~v~~Ac~~hE~nrQ~~m~--~~il~Li 194 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEV--TLLTLQWLQKACIMHEVNRQLFME--LKILELI 194 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHH--HHHHHHHHHHHHHHhHHHHHHHHH--hhHHHHH
Confidence 33344456777777777 57877653 233344444433334443 333344444433321 222211 1234444
Q ss_pred HHH-hccCcHHHHHHHHHHHHHHHHh-------cCC-ChH------hHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcC
Q 000167 372 LEK-LKEKKPTVAESLTQTLQAMHKA-------GCL-NLV------DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSS 435 (1972)
Q Consensus 372 L~k-lkdkk~~V~~aa~~aL~al~~~-------~~~-~l~------~il~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~ 435 (1972)
+.- ..+.|..++.++..++.++.-- ++. +.. .++..+.++++. -.|.+-...+..|.++.-+.
T Consensus 195 ~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~- 273 (461)
T KOG4199|consen 195 LQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD- 273 (461)
T ss_pred HHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH-
Confidence 422 3566666666677778776532 111 111 123444455552 22666555555555543210
Q ss_pred hhHHHHhhhhH-----HHHHHHHhcC-CChHHHHHHHHHHHHHHHHhCchhH
Q 000167 436 KAAVLKVHKDY-----VPICMECLND-GTPEVRDAAFSVLAAIAKSVGMRPL 481 (1972)
Q Consensus 436 ~~~l~~~l~~l-----~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~~ge~~~ 481 (1972)
...+.+ +..++.|+.| ....+|..+..|+..+-...|.+..
T Consensus 274 -----E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv 320 (461)
T KOG4199|consen 274 -----EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV 320 (461)
T ss_pred -----HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch
Confidence 111111 3468899999 5568999999999999999998654
No 237
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.62 E-value=1.1e+03 Score=35.76 Aligned_cols=298 Identities=12% Similarity=0.122 Sum_probs=159.5
Q ss_pred hcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHH
Q 000167 611 KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLG 688 (1972)
Q Consensus 611 ~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~ 688 (1972)
.+-+-|.|+.-++.+..-+.+.... + .+.+ + -|..+.+..+.++..+.+... .+...++...--.
T Consensus 813 p~v~~k~~~~ile~~~esi~~sk~~-r-~qsV-~----------~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~ 879 (2067)
T KOG1822|consen 813 PHVNNKIRLSILEHFPESIKQSKSA-R-QQSV-Q----------VNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALT 879 (2067)
T ss_pred cCccHHHHHHHHHHHHHHhhhhccc-h-hHHH-H----------HHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHH
Confidence 3456677777777666555441110 0 1111 0 022234455666666666443 2333333333222
Q ss_pred HHhh-h--cchhhhHHHHHHHHHHHhhcChhH----HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCC--CChhhH
Q 000167 689 ISER-V--ADIKTRAHAMKCLTTFSEAVGPGF----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH--LKLKDL 759 (1972)
Q Consensus 689 LveK-l--gd~K~r~~a~~~L~~l~e~~~~~~----vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~--l~~k~l 759 (1972)
++.. + .+++++=.+.+++..++..++-.. +....++.+...+.|-.|.+-...+..+.+.-|.-+ -.+..-
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~ 959 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTS 959 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccH
Confidence 2222 2 335777778888888887665433 455556666667888888887777777766555421 112222
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCC
Q 000167 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1972)
Q Consensus 760 i~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~ 839 (1972)
+..+..++-++..|.|++.+...+..+-.-.|+-++.+.+. .+.....-+-.+ |+. +
T Consensus 960 v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~----tlsl~~~lLls~----p~~--~------------- 1016 (2067)
T KOG1822|consen 960 VSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP----TLSLCLKLLLSV----PTS--H------------- 1016 (2067)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH----HHHHHHHHcCCC----Ccc--h-------------
Confidence 33444441344456999999998888777777666554422 222222221111 110 0
Q ss_pred CCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHH--------HHhccccchHHH
Q 000167 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGG--------LRGRLYDSNKNL 911 (1972)
Q Consensus 840 ~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~--------L~~~L~DsN~~V 911 (1972)
+++...+...+. + -+....++....+.+.++...+-... ..-.+..++..+
T Consensus 1017 --------~ev~q~~~R~~~---~----------~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~ln 1075 (2067)
T KOG1822|consen 1017 --------VEVHQCYNRCFN---G----------DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLN 1075 (2067)
T ss_pred --------hhhhhhhccccc---c----------chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccch
Confidence 011100000000 0 00122233333355555531111111 112235567778
Q ss_pred HHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000167 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1972)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~ 967 (1972)
..+++.|++.+...-.+ .-....+++.+...+..+--..|++...|++.++...
T Consensus 1076 qa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1076 QAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred HHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 88999999988654433 3456789999999999999999999999999887654
No 238
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=46.22 E-value=1.4e+02 Score=31.82 Aligned_cols=123 Identities=15% Similarity=0.243 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000167 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1972)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~ 400 (1972)
..+.+++..+...+.. +..-....+.++..+.+.+.. + ...-+ ..+++..+.++....
T Consensus 22 ~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-~---~~~~~------~~~r~~~l~~~l~~~----------- 79 (148)
T PF08389_consen 22 QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-F---RRSSL------SQERRRELKDALRSN----------- 79 (148)
T ss_dssp TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-S---HCCHS------HHHHHHHHHHHHHHH-----------
T ss_pred hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-h---hchhh------hHHHHHHHHHHHHHH-----------
Confidence 3455566666665554 344555666777766665543 1 00000 011122222222222
Q ss_pred hHhHHHHHHHHhhc---C-ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHH
Q 000167 401 LVDVVEDVKTSVKN---K-VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1972)
Q Consensus 401 l~~il~~l~~~l~~---K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 469 (1972)
.+.+++.+...++. . +..+...++..+..++.-.+...+.. ..+++.+.+.+ .+++.|++|.+||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 23445555555542 2 27888899998888887444444322 45889999999 5556699999986
No 239
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=45.42 E-value=2.9e+02 Score=37.95 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=77.9
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh-
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK- 444 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~- 444 (1972)
.++..|++.+-.++.. .+++-++....-+-..++..|-..+. ++.-|..++.+|..++...+.. +.+.+.
T Consensus 39 ~l~~~l~~y~~~t~s~------~~~~il~~~~~P~~K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~-l~~i~~t 109 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQ------RALEILVGVQEPHDKHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPW-LYKILQT 109 (668)
T ss_pred HHHHHHHHHHhhcCcH------HHHHHHHhcCCccHHHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCch-HHHHhcC
Confidence 4567777776555432 22333333211122567777777666 4678999999999999877653 333332
Q ss_pred hHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccH
Q 000167 445 DYVPICMECL-NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1972)
Q Consensus 445 ~l~p~l~k~l-~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~ 490 (1972)
.+++.|.+|| -|.+..|=..|.-+|..+.-++... +.++++.|-.
T Consensus 110 ~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~-l~~~L~~Lf~ 155 (668)
T PF04388_consen 110 PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS-LGPHLPDLFN 155 (668)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch-hhHHHHHHHH
Confidence 4666777775 8999999999999999999888864 6778877654
No 240
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=45.10 E-value=1.4e+02 Score=37.12 Aligned_cols=118 Identities=14% Similarity=0.268 Sum_probs=85.4
Q ss_pred chhhhhccCChHHHHHHHHHHHHHh-cCCCCC----CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhch---
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLA-STKRIA----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF--- 360 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~----~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f--- 360 (1972)
.|++-+...+...=-+|...+..+. .++.+. ..+|..++..+.+++...|....+.++++|+.|-.. +..|
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm 246 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD-RSNFNVM 246 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc-hhHHHHH
Confidence 3556667788888888999998865 444433 357999999999999999999999999999998742 2222
Q ss_pred hhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000167 361 SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1972)
Q Consensus 361 ~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l 408 (1972)
..|+ ..-+..++..++|+.++|+-.|...++-++.+ ....+.|...|
T Consensus 247 ~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~~~I~~iL 295 (335)
T PF08569_consen 247 TRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKPPPIVDIL 295 (335)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-BHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCChHHHHHH
Confidence 2453 35678888899999999999899999988887 44445555544
No 241
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=44.96 E-value=6.2e+02 Score=30.36 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=64.5
Q ss_pred hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcCchh
Q 000167 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVHLDK 971 (1972)
Q Consensus 894 ~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~--~Vr~Aa~~aL~~i~~~~~l~~ 971 (1972)
.+-+.+|.+.+.|..+..+.++..++|+|- .+.-+|.+.+.|.|.+. .||..|..||.+++. +.
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----e~ 251 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQ----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----ED 251 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhcc----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----HH
Confidence 677888889898887777877777777652 34567888888888664 599999999988754 45
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHH
Q 000167 972 MVPYVTTALTDAKLGAEGRKDLFDWL 997 (1972)
Q Consensus 972 ll~~l~~~L~~~~~~~~~R~~~l~~L 997 (1972)
.++.|...+.+. .+.+|..+---|
T Consensus 252 ~~~vL~e~~~D~--~~vv~esc~val 275 (289)
T KOG0567|consen 252 CVEVLKEYLGDE--ERVVRESCEVAL 275 (289)
T ss_pred HHHHHHHHcCCc--HHHHHHHHHHHH
Confidence 567777777765 466776655444
No 242
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=44.76 E-value=1.3e+02 Score=38.03 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=75.8
Q ss_pred HHHHHHHhhccCCC-CchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcCC---Ch
Q 000167 32 NIDLAALCDSITDP-KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG---RP 107 (1972)
Q Consensus 32 yeel~~~~~~~~d~-~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~---k~ 107 (1972)
.++|.++|+..++- .+-.|..+..-+..++-+.+..+--.|+.++-.++..... .......=++.+|-++|.. ..
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~ 82 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKND 82 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCCh
Confidence 46778888776431 2334555666566554444499999999999888766422 2222222355666677751 22
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChhHHHH
Q 000167 108 KTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRAS 187 (1972)
Q Consensus 108 ~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~ 187 (1972)
--|++|..++-.|+|+.+ |++.+ ++.++..+..+.+|.+...|..
T Consensus 83 ~ER~QALkliR~~l~~~~----------------------------------~~~~~-~~~vvralvaiae~~~D~lr~~ 127 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKK----------------------------------GPKEI-PRGVVRALVAIAEHEDDRLRRI 127 (371)
T ss_pred HHHHHHHHHHHHHHHhcC----------------------------------CcccC-CHHHHHHHHHHHhCCchHHHHH
Confidence 334555555555555421 22222 3555666666666666666777
Q ss_pred HHHHHHHHHHhh
Q 000167 188 SKGLTLELCRWI 199 (1972)
Q Consensus 188 a~~l~~ely~~l 199 (1972)
+...++|+.-.-
T Consensus 128 cletL~El~l~~ 139 (371)
T PF14664_consen 128 CLETLCELALLN 139 (371)
T ss_pred HHHHHHHHHhhC
Confidence 777766666543
No 243
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=44.30 E-value=1.1e+02 Score=33.86 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHHHccccCCCC--C--h-----hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 866 DWKVRLESIEAVNKILEEANKRIQPA--G--T-----GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~I~~~--~--~-----~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
++..|.=|++.+..+++.++..+... . + .++...|.+.+...+..+...+++++..+...++..++...+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999998764444421 1 1 2344444444444558899999999999999999999999999
Q ss_pred HHHHHHHHhCCCc---HHHHHHHHHHHHHHHH
Q 000167 937 VLSDILKCLGDNK---KHMRECTLTVLDAWLA 965 (1972)
Q Consensus 937 llp~ll~~L~D~k---~~Vr~Aa~~aL~~i~~ 965 (1972)
+++.++..+-+++ ...|..+.+++..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 9999988443322 2566767666666654
No 244
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=44.20 E-value=43 Score=36.95 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=79.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh----hh----hhhHHHHHH
Q 000167 63 DSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL----EA----VDVFLDVME 134 (1972)
Q Consensus 63 DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~----~~----~~~v~~~L~ 134 (1972)
.....+.-.++-++..+++..+..+.+.+.+.+..++++.- ....-.+..++..+.-+ .+ .+.+.+.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~---~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGE---MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccc---chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 34555666777777777766666666666666666665521 12333344444443322 11 267788888
Q ss_pred HHhh--cCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhc-CCChh-HHHHHHHHHH
Q 000167 135 KAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFD-HQDQN-VRASSKGLTL 193 (1972)
Q Consensus 135 ~~~~--~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~-~~d~~-VR~~a~~l~~ 193 (1972)
+... .++.++..+++.+|..+...-.....-.+..+++|..++. ..|.. ||-.|.-.++
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 8777 8899999999999987654333333346778899999995 44455 6777655543
No 245
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.81 E-value=1.4e+03 Score=34.08 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=64.8
Q ss_pred cHHHHHhhh-c--CCChhhHHHHHHHHHHHHHhhCCCcccc-cchHHHHHhhhcCCchHHHHHHHHHHHHHHHHhCHHHH
Q 000167 1292 TLPYILEGL-R--SKNNRTRIECVDLVGFLIDHHGAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367 (1972)
Q Consensus 1292 vf~~l~~gl-~--sKN~r~R~ecl~~l~~li~~~G~~~~~~-~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~ 1367 (1972)
++|++.+++ + +-+.+.|.-.+..+..++.+.|-++..- +..+|.+|.++.|-|-+|-..+-..+-++=...|+.+|
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~ 1618 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQ 1618 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhh
Confidence 677776665 3 4455888889999999999999887432 45579999999999999999999988888889999998
Q ss_pred HHh
Q 000167 1368 RYV 1370 (1972)
Q Consensus 1368 ~~v 1370 (1972)
.|+
T Consensus 1619 ~y~ 1621 (1621)
T KOG1837|consen 1619 SYL 1621 (1621)
T ss_pred hcC
Confidence 874
No 246
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=43.25 E-value=7.3e+02 Score=30.65 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=71.8
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc-
Q 000167 947 DNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM- 1021 (1972)
Q Consensus 947 D~k~~Vr~Aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L- 1021 (1972)
|+..++|-..-..+-+++..+++ ..=+..+-+-+++-+.+.....+++..+.+.+............+.-++..+
T Consensus 117 d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt 196 (378)
T KOG2753|consen 117 DKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYT 196 (378)
T ss_pred CCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhc
Confidence 44444898888888888888873 2233456666765555566778899999988877665333344444455555
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000167 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1972)
Q Consensus 1022 ~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~ 1058 (1972)
+|.....|..|.+|+...+.--.. +.-..+-.|+|-
T Consensus 197 ~dnas~AredA~rcV~~av~dP~~-F~fD~Ll~L~pV 232 (378)
T KOG2753|consen 197 EDNASEAREDAMRCVVEAVKDPKI-FLFDHLLTLPPV 232 (378)
T ss_pred ccchhHHHHHHHHHHHHHHcCCce-eccchhccCchH
Confidence 555688899999999887754333 222234445543
No 247
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=43.22 E-value=93 Score=42.31 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=74.2
Q ss_pred HHHHHHHHHhc----ccCHHHHHHHHHHHHHHHHHhhhc----------hhhhhhhHHHHHHHHhccCcHH-HHHHHHHH
Q 000167 325 EVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTH----------FSGSSRFLLPVLLEKLKEKKPT-VAESLTQT 389 (1972)
Q Consensus 325 ~l~~~L~k~l~----D~N~~V~~~A~~~l~~La~~L~~~----------f~~~~~~llp~LL~klkdkk~~-V~~aa~~a 389 (1972)
+++..+...++ ..+..+...|+-+++.|+...-.. .......+++.+...|++.... =.+....+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 45555544444 345567888888888888865443 3444555666666665521110 01333445
Q ss_pred HHHHHHhcCCChHhHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcC--CChHHHHH
Q 000167 390 LQAMHKAGCLNLVDVVEDVKTSVKNK---VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND--GTPEVRDA 464 (1972)
Q Consensus 390 L~al~~~~~~~l~~il~~l~~~l~~K---np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~D--s~~~VR~a 464 (1972)
|.+|-. .+...+++.+...+..+ ...+|..++..|.++...++ +.+.+.+...+.| .+++||-+
T Consensus 511 LkaLgN---~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~--------~~v~~~l~~I~~n~~e~~EvRia 579 (618)
T PF01347_consen 511 LKALGN---LGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP--------EKVREILLPIFMNTTEDPEVRIA 579 (618)
T ss_dssp HHHHHH---HT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H--------HHHHHHHHHHHH-TTS-HHHHHH
T ss_pred HHHhhc---cCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc--------HHHHHHHHHHhcCCCCChhHHHH
Confidence 555543 34567888887777655 57888888888776543332 2334445555433 34689999
Q ss_pred HHHHH
Q 000167 465 AFSVL 469 (1972)
Q Consensus 465 A~~~l 469 (1972)
|...|
T Consensus 580 A~~~l 584 (618)
T PF01347_consen 580 AYLIL 584 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97554
No 248
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=43.21 E-value=80 Score=34.96 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000167 913 MATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1972)
Q Consensus 913 ~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~ 966 (1972)
..++.++-.|...+|..+-+|+..++|.++..+.......|+....-|..++..
T Consensus 105 ~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 105 TAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345566667778899999999999999999999877778888877777766653
No 249
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=43.05 E-value=3.8e+02 Score=29.08 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-----H
Q 000167 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----A 438 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~-----~ 438 (1972)
++.-+..+|.+|.-+++.+..++.=||+. ..--+++.+.|++-|+..+-..|...+.|+..+.+.+... .
T Consensus 6 ~r~~F~~~L~~L~aS~qSi~kaa~fAlk~-----~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSIQKAAQFALKN-----RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHc-----cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 56677888998988888888777777764 1234689999999999889999999999999866654222 1
Q ss_pred HHHhhhhHHHHHHHHhc-CCCh--HHHHHHHHHHHHHH
Q 000167 439 VLKVHKDYVPICMECLN-DGTP--EVRDAAFSVLAAIA 473 (1972)
Q Consensus 439 l~~~l~~l~p~l~k~l~-Ds~~--~VR~aA~~~l~~l~ 473 (1972)
....++.-+|.++.+.- +.+. .-+..+++.|..+.
T Consensus 81 Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 81 YVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred hHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 22334444444444432 2222 23445555554444
No 250
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=42.98 E-value=2.7e+02 Score=33.37 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcCCccc-------cHHHHHhhh-cCCChhhHHHHHHHHHHHHHhhCCCc--ccccchHHHHHhhhcCCch
Q 000167 1276 MRELTKQIVNFYSATK-------TLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEI--SGQLKSLQIVASLTAERDG 1345 (1972)
Q Consensus 1276 v~~il~~~~~v~~~sk-------vf~~l~~gl-~sKN~r~R~ecl~~l~~li~~~G~~~--~~~~k~l~~ia~~i~drd~ 1345 (1972)
.-.+++.+|.++|+++ ....+++=+ .+..+.....||+-+.+++-.+..+. +....-+..|+.++.++..
T Consensus 111 aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 111 ALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred HHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 3478999999999985 345666667 55678899999999999987776654 2223457889999987754
Q ss_pred HHHHHHHHHHHHHHHHhCHH
Q 000167 1346 EIRKAALNTLATGYKILGED 1365 (1972)
Q Consensus 1346 ~VR~aAl~~l~~~y~~~G~~ 1365 (1972)
-|+-=+.|+.-+|.++++.
T Consensus 191 -~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 191 -DRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred -cHHHhHHHHHHHHHHHccc
Confidence 2333466677677766543
No 251
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=42.93 E-value=2.8e+02 Score=40.03 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCC-CCCHHHHHhhhhHHHHhhCCChHHHHHHHHHHHHHHhh
Q 000167 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY-SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN 1285 (1972)
Q Consensus 1208 ~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y-~l~~~Ea~~~lp~L~~K~Gd~k~~vr~~v~~il~~~~~ 1285 (1972)
|.| |+.|+.-|=+-.++.|...++..+.+ .+.+.+| .+..+ .+|...+.|+||....||+....+|+.+..
T Consensus 501 N~d-Ll~~~IdrCYss~~~va~gYF~vlae---v~~~~~~~~~~~~---~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 501 NPD-LLDWVIDRCYSSSPRVAEGYFTVLAE---VFSEREYPPCPFW---ELLNLVLFKLGDESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred hHH-HHHHHHHHhcCCChhHHHHHHHHHHH---HHHcCCCCCCCHH---HhHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 445 68898888777889988887766655 4545554 45544 477888999999999999999999987764
No 252
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=42.79 E-value=1.9e+02 Score=36.27 Aligned_cols=217 Identities=12% Similarity=0.102 Sum_probs=125.6
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCC--CchhHHhh---hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhch--hhh
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDP--KDNRIREL---GPLFKKTVADSNAPVQDKALDALIAYLKAADA--DAG 88 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~--~~~~~~~~---~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~--~~~ 88 (1972)
+++..-.+.|-.|..++-.+.+.|...+-. .+.-|+.. ...++..+.|-.+.+-.+.++.+..++...=. .+.
T Consensus 398 leaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfs 477 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFS 477 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 456677899999999999999999764321 22223332 34456667777777777777766555543211 122
Q ss_pred hh-----hH-HHHHHHHHhhcCCChhHHHHH---HHHHHHHHhhhhhhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHH
Q 000167 89 RY-----AK-EVCDAIAAKCLTGRPKTVEKA---QAVFMLWVELEAVDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSE 158 (1972)
Q Consensus 89 ~~-----~~-~v~~~LveK~l~~k~~~k~~a---~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv~~~~l~~l~~~l~~ 158 (1972)
++ +. .+|..+.-. .+.-..++..| ++.+..|.|...-..|-+.|..-+ .+|.|.+...-...|...++.
T Consensus 478 kledahclehhfctlllpn-gdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkd 556 (666)
T KOG4825|consen 478 KLEDAHCLEHHFCTLLLPN-GDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKD 556 (666)
T ss_pred hhhHHHHHHHhhhhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHh
Confidence 22 11 122222222 22223344333 566666776655555666665544 488999888888888888888
Q ss_pred hCCC--ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHh-----hCCchhhHHHhhhChHHHHHHHHHHHHhccCCC
Q 000167 159 FGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRW-----IGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (1972)
Q Consensus 159 fG~~--~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-----lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (1972)
.|.. .+-..-..++-++...|.--.+|..|...++.+|+. +|+++. ..+.++=+-...+..-+.|+++.|..
T Consensus 557 lgkGragfiediakkfgVpaeehglndkreaafaiicdmtrdhQarsIgedLm-pddskngriilvksefEgFAkiDgra 635 (666)
T KOG4825|consen 557 LGKGRAGFIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTRDHQARSIGEDLM-PDDSKNGRIILVKSEFEGFAKIDGRA 635 (666)
T ss_pred cCCCccchhHHHHHHhCCCccccchhHHHHhHhhhhhhhcccHHHHHHHhhcC-cccccCCceEEeHHHhhhhhhccCCC
Confidence 7763 222222344555666777788999999999999864 343311 11111112223343445566666655
Q ss_pred CCC
Q 000167 232 RPT 234 (1972)
Q Consensus 232 ~P~ 234 (1972)
.|+
T Consensus 636 nda 638 (666)
T KOG4825|consen 636 NDA 638 (666)
T ss_pred ChH
Confidence 553
No 253
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=42.31 E-value=2e+02 Score=37.30 Aligned_cols=207 Identities=16% Similarity=0.147 Sum_probs=108.2
Q ss_pred CCCcccccccc---cHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-----ccchHHHHHHH
Q 000167 844 GLPREDISGKF---TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMAT 915 (1972)
Q Consensus 844 ~lprvdIs~~l---~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L-----~DsN~~V~~~A 915 (1972)
.+++.||.+.+ ...|+..+....-.+=.--+..+-.++.-....+.|. ...++..|...+ +.+|.....-.
T Consensus 14 ~~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~-~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 14 RFSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPI-AVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp SS-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred eECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 45556665433 3344444422111222223445555554333344443 245555554443 56788888888
Q ss_pred HHHHHHHHHHcCh-h---hHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChh
Q 000167 916 LITLGAVASAMGP-A---VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAE 988 (1972)
Q Consensus 916 l~~l~~La~alg~-~---~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~~~~~~ 988 (1972)
.++++.+...... + ...+-..++|.+...|...-....-.+.+-+..+.+... +....-.+...|-++. -|+
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~-lWe 171 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA-LWE 171 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG-GGG
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc-hhc
Confidence 8888888776543 2 235667788888888887776677777777777777654 2221112233332221 133
Q ss_pred HH---HHHHHHHHHHhccCCC----CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhcc
Q 000167 989 GR---KDLFDWLSKQLTGLSG----FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1972)
Q Consensus 989 ~R---~~~l~~L~~~l~~~~~----~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~ 1054 (1972)
.| -.+...|..++.+.+. ...+..++.-+-+++..+..| ..|+..|..++.+++.+.+.++++.
T Consensus 172 ~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 172 RRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp STTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred cCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 22 2233334333433322 123344444455577766655 6789999999999999988888643
No 254
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.00 E-value=2.8e+02 Score=41.25 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=83.3
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHH-HHHHHHHHHHHh-cCCC----hHhHHHH
Q 000167 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE-SLTQTLQAMHKA-GCLN----LVDVVED 407 (1972)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~-aa~~aL~al~~~-~~~~----l~~il~~ 407 (1972)
+...|+..+-.+...++.|+...+. .+++-.+...+++++++....++. .-.-|+..+.++ +... +..-+..
T Consensus 885 l~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 885 LINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 3366777777777888888876654 377888999999999998877754 445566667777 3222 3333334
Q ss_pred HHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh---cCCChHHHHHHHHHH
Q 000167 408 VKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVL 469 (1972)
Q Consensus 408 l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l---~Ds~~~VR~aA~~~l 469 (1972)
++.-.+ +..|.|+.-++..+...+....+-. ..+....+-.+.+.+ .+++.+|+..=-+|+
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 444444 5667999999999998888776543 222233233333332 445556555444444
No 255
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=41.99 E-value=8e+02 Score=30.74 Aligned_cols=203 Identities=13% Similarity=0.153 Sum_probs=120.4
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc---CCCCCC-C----Ch-HHHHHHHHHHhcccCHHHHHHHHHHHHH------HHH
Q 000167 290 FWEGVKATKWSERKDAVAELTKLAS---TKRIAP-G----DF-TEVCRTLKKLITDVNIAVAVEAIQAIGN------LAR 354 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~---~~ki~~-~----~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~------La~ 354 (1972)
+...+..-+|..|+++..-+..+.. +.+..+ . .. .+++..|...-++..+.+ .+...+.. +|+
T Consensus 81 Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k~e~l~~ 158 (335)
T PF08569_consen 81 LIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIKHESLAK 158 (335)
T ss_dssp HHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTTSHHHHH
T ss_pred HHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHhhHHHHH
Confidence 3444566788899998888777763 222211 1 12 567777777666555433 22222222 222
Q ss_pred HhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000167 355 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (1972)
Q Consensus 355 ~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--------~~~l~~il~~l~~~l~~Knp~vR~~~l~~ 426 (1972)
-+-. ...+-.+++-.....=.|...+..++..++... ..+.+.++..+...+.+.|.-+|++++.+
T Consensus 159 ~iL~------~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 159 IILY------SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHT------SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHhC------cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 2111 112223555566667778888888888766430 13456777877788899999999999999
Q ss_pred HHHHHHhc-ChhHHHHhh--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcC
Q 000167 427 VTFCIETS-SKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1972)
Q Consensus 427 L~~~l~~~-~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (1972)
|..++..- .-....+++ ++-+..++..|.|....+|-.|+..+-.|..- ++++ .+...=|- .-|.++-+++.+-
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~-~~I~~iL~-~Nr~kLl~fl~~f 309 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKP-PPIVDILI-KNREKLLRFLKDF 309 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-B-HHHHHHHH-HTHHHHHHHHHTT
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCC-hHHHHHHH-HHHHHHHHHHHhC
Confidence 99988643 223334544 56788899999999999999999998776643 3332 22222222 2355666777653
No 256
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=41.92 E-value=4.4e+02 Score=32.30 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=112.6
Q ss_pred CChhhhhcCCChHHHHHHHHHHHHHhhcc------CCCCchh---HHhh---------hhhhHhhhcCCcHHHHHHHHHH
Q 000167 14 LPWEDRLLHKNWKVRNEANIDLAALCDSI------TDPKDNR---IREL---------GPLFKKTVADSNAPVQDKALDA 75 (1972)
Q Consensus 14 lpl~erl~~k~WK~R~~ayeel~~~~~~~------~d~~~~~---~~~~---------~~~~~k~v~DsN~~vqe~~lea 75 (1972)
|...++..+-.-+.|..+.+|+-+.+... .++..|. ...+ ...+-+-+.|-++.+---++.+
T Consensus 23 l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~i 102 (342)
T KOG1566|consen 23 LKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQI 102 (342)
T ss_pred HhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHH
Confidence 44445544444677888888888877532 1222221 1111 2223344556666666666666
Q ss_pred HHHHHHHhchh---hhhhh---HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHH---------HhhcC
Q 000167 76 LIAYLKAADAD---AGRYA---KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK---------AIKNK 140 (1972)
Q Consensus 76 l~~~v~~~~~~---~~~~~---~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~---------~~~~K 140 (1972)
...++++.-.+ ...|. .+++..||.- ...+.+.|..|=.|+.|.-..+.+...++. ...--
T Consensus 103 fnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~----~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p 178 (342)
T KOG1566|consen 103 FNNLLRRQVGTRSPTVEYLETNPEILDNLVKG----YENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLP 178 (342)
T ss_pred HHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh----hccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhcc
Confidence 66666653111 11221 2455555543 333789999999999999877766666542 23466
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCcc-----ChhHH-HHhhhhhhcCCChhHHHHHHHHHHHHH
Q 000167 141 VAKAVVPAIDVMFQALSEFGAKII-----PPKRI-LKMLPELFDHQDQNVRASSKGLTLELC 196 (1972)
Q Consensus 141 npKv~~~~l~~l~~~l~~fG~~~~-----~~k~i-l~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1972)
|.++++.|++.+.+++..+-..+. +...+ -++--+++.+.|=-.|-.+..+++++|
T Consensus 179 ~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 179 NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 789999999999999998843221 23333 444778999999999999999999887
No 257
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=41.91 E-value=4e+02 Score=34.40 Aligned_cols=148 Identities=12% Similarity=0.148 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHh-----hhchh-hhhhhHHHHHHHHhccCc---HHHHHHHHH---HH
Q 000167 324 TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL-----RTHFS-GSSRFLLPVLLEKLKEKK---PTVAESLTQ---TL 390 (1972)
Q Consensus 324 ~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L-----~~~f~-~~~~~llp~LL~klkdkk---~~V~~aa~~---aL 390 (1972)
.++++.|..+++ -..-+|++.++.++..|...- +..+. ..+..=++.+++.+.+.| +.+.+.+.. .|
T Consensus 227 ~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L 306 (429)
T cd00256 227 LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEEL 306 (429)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 356666666666 445668888888887777632 11121 112222344555554432 344443332 22
Q ss_pred HHHHHhcCCChHhHHHH-----------------------------------HHHHhh-cCChHHHHHHHHHHHHHHHhc
Q 000167 391 QAMHKAGCLNLVDVVED-----------------------------------VKTSVK-NKVPLVRSLTLNWVTFCIETS 434 (1972)
Q Consensus 391 ~al~~~~~~~l~~il~~-----------------------------------l~~~l~-~Knp~vR~~~l~~L~~~l~~~ 434 (1972)
..-++. -++++.-..+ +..-|+ +.+|.+-.-+|.=+..++..+
T Consensus 307 ~~~~k~-ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~ 385 (429)
T cd00256 307 KNSVQD-LSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY 385 (429)
T ss_pred HHHHHH-cCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC
Confidence 222222 1333333333 233332 333444444455555555555
Q ss_pred Chh--HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 435 SKA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 435 ~~~--~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
|.. .+.++ . .-..++++|++.|++||..|..|+..+|-
T Consensus 386 P~gr~i~~~l-g-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 386 PRGKDVVEQL-G-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred ccHHHHHHHc-C-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 422 22211 1 23468899999999999999999998874
No 258
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.56 E-value=1.4e+02 Score=40.40 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=66.3
Q ss_pred HHHHHHHHHhh-hhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccC----hhHHHHhhhhhhcCCChhHHHH
Q 000167 113 AQAVFMLWVEL-EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP----PKRILKMLPELFDHQDQNVRAS 187 (1972)
Q Consensus 113 a~~~ll~~~E~-~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~----~k~il~~l~~ll~~~d~~VR~~ 187 (1972)
+-++=+.|.|. -..+..+..|+..+.+++..|+..+++.|..+++.-|..+=+ ...=+..+..++.|+-.-||++
T Consensus 106 sdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe 185 (970)
T KOG0946|consen 106 SDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNE 185 (970)
T ss_pred hhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchh
Confidence 44444444443 234556777888889999999999999999999998885311 1123556778899999999999
Q ss_pred HHHHHHHHHHhhC
Q 000167 188 SKGLTLELCRWIG 200 (1972)
Q Consensus 188 a~~l~~ely~~lG 200 (1972)
++.++.++.+--+
T Consensus 186 ~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 186 AILLLSELVKDNS 198 (970)
T ss_pred HHHHHHHHHccCc
Confidence 9999999998776
No 259
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=40.92 E-value=5.6e+02 Score=30.21 Aligned_cols=118 Identities=10% Similarity=0.115 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh-cC
Q 000167 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NK 415 (1972)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~-~K 415 (1972)
+..+......++..++..... +...+++.|-.-+ ++....++..+.+++..++.+....+......|..-+. .+
T Consensus 97 ~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~ 172 (234)
T PF12530_consen 97 FWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDY 172 (234)
T ss_pred hHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCcc
Confidence 333444444666677765543 7778888888888 88888899999999999997633444444444544444 45
Q ss_pred ChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHHhcCCCh
Q 000167 416 VPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECLNDGTP 459 (1972)
Q Consensus 416 np~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l~Ds~~ 459 (1972)
.|.+=...+.|+..+-... ...........++..+-+.....+.
T Consensus 173 rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 173 RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 6777766777776422211 1223344456677777777777774
No 260
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.27 E-value=1e+02 Score=42.65 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=51.1
Q ss_pred HHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 000167 410 TSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 410 ~~l~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
..|.+ ..|-+|+=++..|.++.+....+.....-...-..|...|.|+-|+||.||.-||++|....
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 44444 35888988888888888877766554333444567888999999999999999999999863
No 261
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=39.15 E-value=1.2e+03 Score=31.98 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=70.5
Q ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHH-hCCCCCC-----hhh
Q 000167 685 CLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED-FGVSHLK-----LKD 758 (1972)
Q Consensus 685 il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~-fG~~~l~-----~k~ 758 (1972)
.+-.+.+.-.|+-+|..|.+-+..+-+.-+.=.++-+++-. ..+++-|+--|+.+|.+.+.+ ++....+ -+.
T Consensus 8 av~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~--~ts~d~vkf~clqtL~e~vrekyne~nl~elqlvR~s 85 (980)
T KOG2021|consen 8 AVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLIN--ETSNDLVKFYCLQTLIELVREKYNEANLNELQLVRFS 85 (980)
T ss_pred HHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHh--hcccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 33444444455566777776666664433322233333322 348899999999999999985 4432222 245
Q ss_pred HHHHHHhcCCCCC----chhHHHHHHHHHHHHHHhhChhHHh-hhhc
Q 000167 759 LIDFCKDTGLQSS----AAATRNATIKLLGALHKFVGPDIKG-FLAD 800 (1972)
Q Consensus 759 li~~l~~~gL~~s----n~~VR~aA~~ll~~Ly~~~G~~l~~-~L~~ 800 (1972)
++.|++-.-+++. -+-+|..+.+++..|+.+.-++.++ |+.|
T Consensus 86 v~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~d 132 (980)
T KOG2021|consen 86 VTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDD 132 (980)
T ss_pred HHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 6677654325555 3558999999999999888777653 4433
No 262
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=38.07 E-value=1e+02 Score=31.47 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=32.4
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000167 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1972)
Q Consensus 401 l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1972)
.+.++-.|..||.|=++.||..++.||.-+++.++..
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 4567788889999999999999999999999987654
No 263
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=37.63 E-value=2e+02 Score=30.01 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=53.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1972)
.+|+.+..++..|.....=|++..-. -..+++.+...+..-.+.-|...+=.+..++.++.......+...+.|.
T Consensus 4 ~~L~~L~~s~~~I~~lt~~~~~~~~~-----a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~ 78 (121)
T smart00582 4 QKLESLNNSQESIQTLTKWAIEHASH-----AKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPV 78 (121)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHH
Confidence 45566666676776666666654332 2467777777666555556666665566666655332111122333333
Q ss_pred ----HHHHhcCCChHHHHHHHHHHHHHH
Q 000167 450 ----CMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 450 ----l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
+....+..++++|+...+.+...-
T Consensus 79 ~~~~~~~~~~~~~~~~~~ki~kll~iW~ 106 (121)
T smart00582 79 FQDALRDVLGAANDETKKKIRRLLNIWE 106 (121)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 333334444667766666664443
No 264
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.28 E-value=2.6e+02 Score=39.18 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHccccCC-CC-ChhhHHHHHHhccccc-hHHHHHHHHHHHHHHHHHcChh-hHhhhhhHHHHHHHH
Q 000167 869 VRLESIEAVNKILEEANKRIQ-PA-GTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKC 944 (1972)
Q Consensus 869 ~R~eale~l~~ll~~a~~~I~-~~-~~~eL~~~L~~~L~Ds-N~~V~~~Al~~l~~La~alg~~-~~~~~~~llp~ll~~ 944 (1972)
.|-.|.=-|..|+.+ .++. .. .-++++..-...|+|. .+-+++-.|.||+.|-...-.. +.-.-..-.-.++..
T Consensus 573 qrtmaAFVLAviv~n--f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRN--FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHcc--cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 455555556666642 2221 11 1267777767788884 6888898899988886543221 111111233467778
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhc
Q 000167 945 LGDNKKHMRECTLTVLDAWLAAV 967 (1972)
Q Consensus 945 L~D~k~~Vr~Aa~~aL~~i~~~~ 967 (1972)
|.|+-+.||.||.-||.+++...
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999864
No 265
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=34.96 E-value=3.6e+02 Score=27.77 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=43.1
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 000167 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 470 (1972)
Q Consensus 402 ~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~ 470 (1972)
..++..+...++...|.-|...+=.+..++.++....-......+.+.+..+....++.+|..-.+.+.
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456677777777777777777777777777766543222222334666666666777777766555553
No 266
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.76 E-value=9.5e+02 Score=29.54 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=75.6
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhc-CCCCCCC----ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH--Hhhhchh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAPG----DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFS 361 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~----~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~--~L~~~f~ 361 (1972)
.|...+...+|.....|...|..++. .+..... .+..++..|...+...+..+...|++|++.|.+ ..|..|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 47777788899999999999999874 3322221 234445555554444455567888889988874 4455453
Q ss_pred hhhhhHHHHHHHHh----ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000167 362 GSSRFLLPVLLEKL----KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1972)
Q Consensus 362 ~~~~~llp~LL~kl----kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1972)
. ...++.++..+ +.++....+-.-.++-.++.- +.. +.+...+.+++ ....|..++..+.+.
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~-----~~~~~~~~~~~------~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL-SFE-----PEIAEELNKKY------LIPLLADILKDSIKE 254 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHHHH-TTS-----HHHHHHHHTTS------HHHHHHHHHHH--SH
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH-hcC-----HHHHHHHhccc------hHHHHHHHHHhcccc
Confidence 2 34444444444 234444455555555554432 121 22333333333 344445555544433
Q ss_pred HHHHhhhhHHHHHHHHhcCCChH
Q 000167 438 AVLKVHKDYVPICMECLNDGTPE 460 (1972)
Q Consensus 438 ~l~~~l~~l~p~l~k~l~Ds~~~ 460 (1972)
|...-.+-++..+++.....
T Consensus 255 ---KvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 255 ---KVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp ---HHHHHHHHHHHHTTSSSSTT
T ss_pred ---hHHHHHHHHHHHHHhccHHH
Confidence 33444555566666554443
No 267
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=34.50 E-value=48 Score=34.75 Aligned_cols=43 Identities=28% Similarity=0.184 Sum_probs=31.6
Q ss_pred hHHHHHHhhhchhhhhhccCCChhHHHHHHHHHHHhhChHHHhhccCCCCCChhHHHHHHHHHHHh
Q 000167 1640 DLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKL 1705 (1972)
Q Consensus 1640 eLv~KClwk~~k~l~~~~~~~~~~~il~~ih~fl~~~p~~~~~~r~~~~d~plRtvKtil~~l~k~ 1705 (1972)
.-||+-||... |.+ ..+||+++..- -|--.-||||+|..|||-
T Consensus 9 ~eVM~ilW~~~---~~t---------~~eI~~~l~~~-----------~ews~sTV~TLl~RL~KK 51 (123)
T COG3682 9 WEVMEILWSRG---PAT---------VREIIEELPAD-----------REWSYSTVKTLLNRLVKK 51 (123)
T ss_pred HHHHHHHHHcC---Ccc---------HHHHHHHHhhc-----------ccccHHHHHHHHHHHHhc
Confidence 45999999987 333 35778887762 144557999999999983
No 268
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.20 E-value=9.1e+02 Score=29.13 Aligned_cols=174 Identities=15% Similarity=0.172 Sum_probs=100.0
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCC------hHHHHHHHHHHhcccC----HHHHHHHHHHHHHHHHHhhhchhhhh
Q 000167 295 KATKWSERKDAVAELTKLASTKRIAPGD------FTEVCRTLKKLITDVN----IAVAVEAIQAIGNLARGLRTHFSGSS 364 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~~------y~~l~~~L~k~l~D~N----~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (1972)
.+.-|..-.+-+..|..+.+.+-+.+++ +...++.+...+.+.+ ..-+...+..|..+|+.- .....+
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--~~~~La 152 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--GLPNLA 152 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--CCccHH
Confidence 4456655555555544443333333331 2233344444555554 134455567777777432 233444
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000167 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1972)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (1972)
+.+-.-.-.++++++..+++.+.---++++.. .-..++..+.+-+.++-+-+|..++..|..++...+-. .+.-.
T Consensus 153 ~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~---~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~--~~~~~ 227 (262)
T PF14225_consen 153 RILSSYAKGRFRDKDDFLSQVVSYLREAFFPD---HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR--SPHGA 227 (262)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC--CCcch
Confidence 44444445567777777776554433333321 12456777888889999999999999999999876422 11335
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
+++..+.+.+....- ..|.+.+..++.+-|.
T Consensus 228 dlispllrlL~t~~~---~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 228 DLISPLLRLLQTDLW---MEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHHHHhCCccH---HHHHHHHHHHHhhccc
Confidence 567777777755443 3466677666666653
No 269
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=33.85 E-value=2.3e+03 Score=33.84 Aligned_cols=305 Identities=13% Similarity=0.098 Sum_probs=149.1
Q ss_pred CCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcCh--hHHHHHHHHhh----h--------------hCCChHHH
Q 000167 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIM----K--------------DHKNPKVL 735 (1972)
Q Consensus 676 ~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~--~~vl~~l~~~l----~--------------~~KnpKv~ 735 (1972)
.+....+..++..+++.+.....+..-.++|..+++..++ +.+..+++... . ...+|+-+
T Consensus 371 a~~~~~~~~~~~~il~~~~~~~~~~~l~e~l~~l~~rl~~l~~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~~ 450 (2341)
T KOG0891|consen 371 ALGPADQKDLNKDILEQMFKCTLSDSLLERLFILSQRIPKLGQSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKAI 450 (2341)
T ss_pred ccCHHHHHhHHHHHHHHHhcCCchHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhCccccCccccCccchhcccchh
Confidence 3444555566677777777766667777788888877643 22333333211 0 00122200
Q ss_pred H-------HHHHHHHHHHHHhCCCCCChhhHHHH-HHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHH
Q 000167 736 S-------EGILWMVSAVEDFGVSHLKLKDLIDF-CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807 (1972)
Q Consensus 736 ~-------e~l~~L~~~i~~fG~~~l~~k~li~~-l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~ 807 (1972)
. ..+...-..+..|++...+...++.. +... +.+.|.++|..|...++.++++.-. -....|..++
T Consensus 451 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~r~~~~l~~~~ll~~~~~-----~~~~~~~~~~ 524 (2341)
T KOG0891|consen 451 LQKTGDSTDDIQLAFKTLGGFKFSGYSLTLFVQQCVDSY-LEADDSEIRKNAALTCCELLKYDII-----CSQTSPHALQ 524 (2341)
T ss_pred hhhcccccHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHhhhhh-----hhcccchHHH
Confidence 0 00333334455555544333333333 3445 7888999999999999999877532 2233344343
Q ss_pred HHHHHHhcC---CCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 808 ALDAEYEKN---PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA 884 (1972)
Q Consensus 808 ~Le~efek~---~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a 884 (1972)
.+..-+.+. ....+..+.|- +.-.. .+..+.+---.+-+...++..+.|.+-..+..++..++.+...+
T Consensus 525 ~v~~vl~~ll~~aia~~~~~i~~-~v~~~-------l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~ 596 (2341)
T KOG0891|consen 525 VVKEVLSALLTVAIADTDPDIRI-RVLSS-------LNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYN 596 (2341)
T ss_pred HHHHHHHHHHHHhccCCCcchhh-hHHhh-------hccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhcccccccc
Confidence 333333332 21111111110 00000 00000000000000011122223333333333333332222111
Q ss_pred cccCCCCChhhHHHHHHh----ccccch----HHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHH
Q 000167 885 NKRIQPAGTGELFGGLRG----RLYDSN----KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 956 (1972)
Q Consensus 885 ~~~I~~~~~~eL~~~L~~----~L~DsN----~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa 956 (1972)
-.-++..++. .+++.+ ..+...+..-+..+..+...-..+|+..++-.++..+.|....+-.++
T Consensus 597 --------~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~ 668 (2341)
T KOG0891|consen 597 --------PAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAV 668 (2341)
T ss_pred --------HHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHH
Confidence 0113333332 222222 222222233333333333344678888999999999999999999999
Q ss_pred HHHHHHHHHhcC--c----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc
Q 000167 957 LTVLDAWLAAVH--L----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (1972)
Q Consensus 957 ~~aL~~i~~~~~--l----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~ 1003 (1972)
..++..++...| + +.+++.+.+.+.+.. ++.-|...+..+......
T Consensus 669 ~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s-~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 669 LETIGELCAVGGEEMVKWVDELFSLIIKMLQDQS-SLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHHHHHHHHhccchhhhccchHHHHHHHHHHHhh-hhhchhHHHHHhhhhhcc
Confidence 999999999888 4 666777777776542 455566666666554443
No 270
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=33.09 E-value=8.4e+02 Score=28.77 Aligned_cols=135 Identities=13% Similarity=0.059 Sum_probs=77.3
Q ss_pred hHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhh-hHHHHHHH
Q 000167 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVD-VFLDVMEK 135 (1972)
Q Consensus 57 ~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~~-~v~~~L~~ 135 (1972)
+.+.-.++|+..+...|++|-.+..... .....+-.++..+++. ++...+-.+..++..+|+.+.-- ..++.++.
T Consensus 6 ~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~---~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~ 81 (234)
T PF12530_consen 6 LYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQ---GSLELRYVALRLLTLLWKANDRHFPFLQPLLL 81 (234)
T ss_pred HHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcC---CchhHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 3446667777777777777766654431 1111222223233322 23333446677777777764321 22222222
Q ss_pred H--------h--hcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhh-cCCChhHHHHHHHHHHHHHHh
Q 000167 136 A--------I--KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF-DHQDQNVRASSKGLTLELCRW 198 (1972)
Q Consensus 136 ~--------~--~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll-~~~d~~VR~~a~~l~~ely~~ 198 (1972)
. . ...++....++-..+..+...... .-.++++.+..++ ++.+..++.-|.+.+..+...
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 82 LLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD---HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 2 1 133455555655566666555444 2346888888899 899999999999988888743
No 271
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=32.44 E-value=62 Score=26.73 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=22.2
Q ss_pred HHHhhhhhhcCCChhHHHHHHHHHHHHH
Q 000167 169 ILKMLPELFDHQDQNVRASSKGLTLELC 196 (1972)
Q Consensus 169 il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1972)
.+|.|..++.+.|..||.+|...+..|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678888888888888888887776653
No 272
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=31.85 E-value=58 Score=36.68 Aligned_cols=90 Identities=12% Similarity=0.234 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh-----cCChhhHHHHHHHHHHHHH-HhCC-CccChhHHHHhhhhhhcC
Q 000167 107 PKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK-----NKVAKAVVPAIDVMFQALS-EFGA-KIIPPKRILKMLPELFDH 179 (1972)
Q Consensus 107 ~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~-----~KnpKv~~~~l~~l~~~l~-~fG~-~~~~~k~il~~l~~ll~~ 179 (1972)
...|.....-+-.|++.++.+.+++.|..... ........+|+.||..+++ .+|. .++.-..++..+...+..
T Consensus 90 v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 90 VSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred HHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 33455555666667776666666665543322 2345678889999987776 3665 345556788999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 000167 180 QDQNVRASSKGLTLELC 196 (1972)
Q Consensus 180 ~d~~VR~~a~~l~~ely 196 (1972)
.+..+|..+..++..+.
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998887653
No 273
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.56 E-value=2.1e+03 Score=32.50 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=55.0
Q ss_pred HhHHHHHHH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 000167 402 VDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 402 ~~il~~l~~-~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
..++.++.. ...+-+|.+|..++.|+...+=...-.......+.|-..+...++|..-+||+.|.+|+..+++.-
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence 455666653 333678999999999998766432111112334778888999999999999999999999998753
No 274
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.31 E-value=4.5e+02 Score=35.63 Aligned_cols=100 Identities=13% Similarity=0.215 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcCh--------hHHH-HhhhhHHHHHH
Q 000167 382 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSK--------AAVL-KVHKDYVPICM 451 (1972)
Q Consensus 382 V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~--------~~l~-~~l~~l~p~l~ 451 (1972)
..+-...|+..+... -..+++.+ |++++.+. .++....|+.|+..+...-.. ..+. ..+..+++-+.
T Consensus 269 ~~ekvl~aiT~~ae~--~~veRF~p-iv~gl~~~e~~~l~vacmq~INal~t~p~dldfRlhlR~E~mr~gL~~~l~~l~ 345 (1102)
T KOG1924|consen 269 GLEKVLEAITTIAEA--KPVERFRP-IVEGLDFLEKQQLQVACMQFINALVTSPSDLDFRLHLRSEFMRDGLHKYLPDLT 345 (1102)
T ss_pred HHHHHHHHHHHHHhh--cchhhhhh-HHHHHhccchHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHhHHHHHHHhh
Confidence 344444455555442 33344433 44666654 688888999988776543211 1111 22445555554
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHH
Q 000167 452 ECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492 (1972)
Q Consensus 452 k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~ 492 (1972)
.. +.+.++.....|. -.+|+++..+...|++.+
T Consensus 346 ~i----~n~~ldvqlkvfd----E~~e~Dl~el~~rledir 378 (1102)
T KOG1924|consen 346 EI----NNDILDVQLKVFD----EHKEDDLEELSGRLEDIR 378 (1102)
T ss_pred hh----ccHHHHHHHHHHh----hhhhhhHHHHHhHHHhhh
Confidence 43 5666777776663 345667778888887654
No 275
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=30.36 E-value=6.1e+02 Score=28.20 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHhhhhh------hhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCC--CccChhHHHHhhhhhh
Q 000167 108 KTVEKAQAVFMLWVELEAV------DVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGA--KIIPPKRILKMLPELF 177 (1972)
Q Consensus 108 ~~k~~a~~~ll~~~E~~~~------~~v~~~L~~~~~--~KnpKv~~~~l~~l~~~l~~fG~--~~~~~k~il~~l~~ll 177 (1972)
.+-..+..++..++|+.-. ..++..+..-.+ .+++.+...|+.+|..++..--. ..|.-+--++.|...|
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 4445567777777776321 233333333322 23578899999999887764111 1222222355666777
Q ss_pred cCCChhHHHHHHHHHHHHHHhhCCc
Q 000167 178 DHQDQNVRASSKGLTLELCRWIGKD 202 (1972)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~ 202 (1972)
+.+|+.+...|+.|+-.++.-.+++
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCChH
Confidence 7799999999999999999888763
No 276
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=30.10 E-value=9.4e+02 Score=28.07 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=39.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHh
Q 000167 455 NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1972)
Q Consensus 455 ~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~ 501 (1972)
..=.++||++=.-++-.++.+.++...+-+...||..-|.-.++.++
T Consensus 167 ~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly~ 213 (223)
T PF10441_consen 167 YTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLYK 213 (223)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHHH
Confidence 34568999999999999999999888888888999988877777654
No 277
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.95 E-value=5.4e+02 Score=32.09 Aligned_cols=144 Identities=13% Similarity=0.201 Sum_probs=85.0
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh----h---HHHHHHHHHhhc--CCC--------hhHHHHHHHH
Q 000167 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY----A---KEVCDAIAAKCL--TGR--------PKTVEKAQAV 116 (1972)
Q Consensus 54 ~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~----~---~~v~~~LveK~l--~~k--------~~~k~~a~~~ 116 (1972)
...+-+.++.+....+..+|..|.+.+...+...++. + ...++.+...-- ..+ +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 4455566777778888899999988888444323321 1 123444432111 011 2889999999
Q ss_pred HHHHHhhhhhh---------hHHHHHHHHhhcCChhhHHHHHHHHHH-HHHHhCCCc-cCh----hHHHHhhhhhhcCCC
Q 000167 117 FMLWVELEAVD---------VFLDVMEKAIKNKVAKAVVPAIDVMFQ-ALSEFGAKI-IPP----KRILKMLPELFDHQD 181 (1972)
Q Consensus 117 ll~~~E~~~~~---------~v~~~L~~~~~~KnpKv~~~~l~~l~~-~l~~fG~~~-~~~----k~il~~l~~ll~~~d 181 (1972)
++.+.+...+. .++..+.+++..-.+.++...+.+|.+ ++.+=+.+- ... ...+..|..+++..+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 99999875442 335666777778888999999999976 554432210 000 124555555555555
Q ss_pred h----hHHHHHHHHHHHHHH
Q 000167 182 Q----NVRASSKGLTLELCR 197 (1972)
Q Consensus 182 ~----~VR~~a~~l~~ely~ 197 (1972)
+ .|++.+..++..+..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CcccchHHHHHHHHHHHHhc
Confidence 5 555555555444443
No 278
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=29.86 E-value=1.6e+03 Score=30.77 Aligned_cols=70 Identities=9% Similarity=-0.019 Sum_probs=51.4
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1972)
Q Consensus 972 ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1972)
+++.+.+.++++ .--+|..+|.++...=..++...-+.........|+.+.+-.|+-.|.-+|..++.+-
T Consensus 461 iv~hv~P~f~s~--ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 461 IVNHVIPAFRSN--YGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHhhHhhcCc--ccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 344566667765 3568999999998763334433344566667899999999999999999999888664
No 279
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=29.85 E-value=4.8e+02 Score=35.12 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=74.2
Q ss_pred hhHHHHHHhcccc----chHHHHHHHHHHHHHHHHHcChhh----HhhhhhHHHHHHHHhC----CCcHHHHHHHHHHHH
Q 000167 894 GELFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAV----EKSSKGVLSDILKCLG----DNKKHMRECTLTVLD 961 (1972)
Q Consensus 894 ~eL~~~L~~~L~D----sN~~V~~~Al~~l~~La~alg~~~----~~~~~~llp~ll~~L~----D~k~~Vr~Aa~~aL~ 961 (1972)
.+++..|...+.+ .+..+...|+-.++.++......- ...+..+++.+...|. +.....+..+..+|+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 5666666665543 355677788888888876332211 1112344454444433 333344445455544
Q ss_pred HHHHhcCchhhHHHHHHHHh-cCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000167 962 AWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1972)
Q Consensus 962 ~i~~~~~l~~ll~~l~~~L~-~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1972)
++|....++.+...+. +...++.+|..++.-|.......+. .....+.+++.- .+.+.+||-+|.-.|
T Consensus 472 ----N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--~v~~~l~~i~~n-~~e~~EvRiaA~~~l 540 (574)
T smart00638 472 ----NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--KVQEVLLPIYLN-RAEPPEVRMAAVLVL 540 (574)
T ss_pred ----ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHcC-CCCChHHHHHHHHHH
Confidence 4465666666666665 3333567898888888754333322 223333333311 345789999987544
No 280
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.81 E-value=1.6e+03 Score=30.52 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc---hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHH
Q 000167 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS---NKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (1972)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds---N~~V~~~Al~~l~~La~alg~~~~~~~~~llp 939 (1972)
...+-..+.-+|..|+.+= ..+.+..|...+.+. ...++..|+..+..++ ..+-..+.+
T Consensus 500 ~~~~~~~~~~~LkaLgN~g-----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~-------~~~~~~v~~ 561 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLG-----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA-------KHCPEKVRE 561 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG-------GT-HHHHHH
T ss_pred hccCHHHHHHHHHHhhccC-----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHh-------hcCcHHHHH
Confidence 3445566666666666441 145666776666443 4456666655544331 222233344
Q ss_pred HHHHHhCCCc--HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHH
Q 000167 940 DILKCLGDNK--KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWL 997 (1972)
Q Consensus 940 ~ll~~L~D~k--~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L 997 (1972)
.++..+.|.. ..||-||. ..++..-+-..++..|...+.... +.+++..+..+|
T Consensus 562 ~l~~I~~n~~e~~EvRiaA~---~~lm~~~P~~~~l~~i~~~l~~E~-~~QV~sfv~S~L 617 (618)
T PF01347_consen 562 ILLPIFMNTTEDPEVRIAAY---LILMRCNPSPSVLQRIAQSLWNEP-SNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHH-TTS-HHHHHHHH---HHHHHT---HHHHHHHHHHHTT-S--HHHHHHHHHHH
T ss_pred HHHHHhcCCCCChhHHHHHH---HHHHhcCCCHHHHHHHHHHHhhCc-hHHHHHHHHHhc
Confidence 4444444422 34787753 444444455566677777776543 567776666554
No 281
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=29.67 E-value=6.5e+02 Score=32.70 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=79.4
Q ss_pred hhHHHHHHhcc--cc--chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhC-----CCcHHHHHHHHHHHHHHH
Q 000167 894 GELFGGLRGRL--YD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-----DNKKHMRECTLTVLDAWL 964 (1972)
Q Consensus 894 ~eL~~~L~~~L--~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~-----D~k~~Vr~Aa~~aL~~i~ 964 (1972)
.+++..|...+ .+ .|.-+ ++|+-.+...++....+++..+++.+...++ -+++.--....+++.+++
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeyl----Mk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~li 100 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYL----MKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALI 100 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHH----HHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccchHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Confidence 56666666655 22 24333 4455555566667777777777777766553 467788899999999999
Q ss_pred HhcC----------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC--C-CCChhhhHHHHHh-hcCCCCHHH
Q 000167 965 AAVH----------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS--G-FPDAAHLLKPASI-AMTDKSSDV 1028 (1972)
Q Consensus 965 ~~~~----------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~--~-~~~~~~ll~pl~~-~L~D~~~dV 1028 (1972)
+.+. -+.++|.+...|++. -.+-=-+++..|+..++..+ . +.....++.|++. .+.++.+.|
T Consensus 101 r~~~~~~~~~v~~~E~~L~P~f~~ILq~d--V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni 176 (435)
T PF03378_consen 101 RFVCEADPEAVSQFEEALFPPFQEILQQD--VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI 176 (435)
T ss_dssp HHS-GGGHH---HHHHHHHHHHHHHHHTT---TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH
T ss_pred HhccCCChhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc
Confidence 8753 134677777888754 23445677788887777776 2 2355677777544 455555555
No 282
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=29.40 E-value=8.1e+02 Score=30.94 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=71.0
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000167 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1972)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~ 400 (1972)
.+|..|+++.+.-.+ --..|.+.|..+.+ .|-..+..-+-+-++.|-|-...||..|..-|--++.. ..
T Consensus 25 ~~y~~il~~~k~~~k-----~k~lasq~ip~~fk----~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~ 93 (460)
T KOG2213|consen 25 DDYEGILKAVKGTSK-----EKRLASQFIPRFFK----HFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DA 93 (460)
T ss_pred HHHHHHHHHhhcchH-----HHHHHHHHHHHHHh----hCchhhhHHHHhhhccccccchhhHHHHHhccchhccC--ch
Confidence 467777766655333 33445555555443 44455666666777777777777776555555444432 33
Q ss_pred hHhHHHHHHHHhh------------cCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCCChH
Q 000167 401 LVDVVEDVKTSVK------------NKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPE 460 (1972)
Q Consensus 401 l~~il~~l~~~l~------------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~ 460 (1972)
+..+.+.+...|+ -..-++|.-++.||..-+-......+.+-+ ..++..+.+.|+|=..+
T Consensus 94 ~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge 166 (460)
T KOG2213|consen 94 LSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE 166 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH
Confidence 3334343333222 124567777777777666555544443222 33555666666666554
No 283
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=28.98 E-value=8.4e+02 Score=27.14 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCh----HhHHHHHHHHhhc--CChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHH
Q 000167 381 TVAESLTQTLQAMHKAGCLNL----VDVVEDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMEC 453 (1972)
Q Consensus 381 ~V~~aa~~aL~al~~~~~~~l----~~il~~l~~~l~~--Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~ 453 (1972)
.+-.-+-.|+..++.+|.++- ..++..+...... .++.+-+.++.+|...+...+.. ..... +.-++.+...
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~evt~~~Li~h 110 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQEVTLESLIRH 110 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhccCCHHHHHHH
Confidence 444555566666777743332 3455666665553 35889999999999988865431 11111 3356788999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhc
Q 000167 454 LNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1972)
Q Consensus 454 l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~L 488 (1972)
|.+++++++..|...+-++....++..-..+.+.|
T Consensus 111 Lq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l 145 (160)
T PF11841_consen 111 LQVSNQEIQTNAIALINALFLKADDSKRKEIAETL 145 (160)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999998888777764333344433
No 284
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.90 E-value=1.5e+03 Score=30.94 Aligned_cols=96 Identities=20% Similarity=0.359 Sum_probs=63.1
Q ss_pred cHHHHHhhhcCCChhhHHHHHHHH-------HHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHHhCH
Q 000167 1292 TLPYILEGLRSKNNRTRIECVDLV-------GFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE 1364 (1972)
Q Consensus 1292 vf~~l~~gl~sKN~r~R~ecl~~l-------~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~ 1364 (1972)
|..|| ..|.+|++-++ ||++-| -.++.+||..+-+....+..|+.++.+.|++.=.-=...+.++|-=+..
T Consensus 545 v~~Yl-~~l~~kr~~~~-~~~~~i~~d~~~~~~~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~ 622 (667)
T KOG2286|consen 545 VIEYL-RALSKKRASIQ-ELIEKIKSDAETLYHFFRKYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPK 622 (667)
T ss_pred HHHHH-HHHHhhhhhHH-HHHHHHHhhHHHHHHHHHHhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcH
Confidence 34443 34544554466 776554 4556778875544555679999999999887755556666666644443
Q ss_pred H----HHHHhhcCCHHHHHhHHHHHHhhh
Q 000167 1365 D----IWRYVGKLTDAQKSMLDDRFKWKV 1389 (1972)
Q Consensus 1365 ~----v~~~vg~ls~~~~s~l~er~kr~~ 1389 (1972)
+ |.+.=|++|.+++.-+-++++..-
T Consensus 623 ~~l~~il~~R~dls~~~~k~i~~~~~~~~ 651 (667)
T KOG2286|consen 623 DHLEAILKIRGDLSRSEKKKIVDILKESM 651 (667)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3 556667899888888888887653
No 285
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.67 E-value=2.3e+03 Score=32.10 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=69.3
Q ss_pred ChhhHhhhhhHHHHHH-HHhCCCc----HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh---cCCCChhHHHHHHHHHH
Q 000167 927 GPAVEKSSKGVLSDIL-KCLGDNK----KHMRECTLTVLDAWLAAVHLDKMVPYVTTALT---DAKLGAEGRKDLFDWLS 998 (1972)
Q Consensus 927 g~~~~~~~~~llp~ll-~~L~D~k----~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~---~~~~~~~~R~~~l~~L~ 998 (1972)
.+.+.+|+..+.+..+ -++++.. ..-..++..|...+.....-..+.+.+...+. ..+.++.+|..++.++.
T Consensus 1473 ~~~~~kyl~~~~~~~~~~~~~~~~y~~~d~a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~ 1552 (1710)
T KOG1851|consen 1473 VKLLPKYLPDLIADDLYPCLGENTYRDVDLAKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQ 1552 (1710)
T ss_pred HhcchhhhhhhhcccccccccccccccchHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3444556666655542 2334321 22334444555555555433334444443333 12237999999999987
Q ss_pred HHhccCC-C--CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChh
Q 000167 999 KQLTGLS-G--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQE 1046 (1972)
Q Consensus 999 ~~l~~~~-~--~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~ 1046 (1972)
..+=... . ..+..++-.-+...++|..-+||+.|++||..++..-...
T Consensus 1553 ~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1553 TVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence 6543221 1 1223344455777889999999999999999998765443
No 286
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=28.58 E-value=4.9e+02 Score=28.67 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh----c--CCChHhHHHHHHHHhh-
Q 000167 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA----G--CLNLVDVVEDVKTSVK- 413 (1972)
Q Consensus 341 V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~----~--~~~l~~il~~l~~~l~- 413 (1972)
++..+.-|+..+-+.-+..|...+..++..++..-... -.-.+..++.+++.. + -..-+.+++.+..-+.
T Consensus 21 ~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d---~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD---SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC---HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch---hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 55666666666656667777777777777776443322 122233444444432 0 0223467777877777
Q ss_pred -cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhc-CCChH-HHHHHHHHHH
Q 000167 414 -NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN-DGTPE-VRDAAFSVLA 470 (1972)
Q Consensus 414 -~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~-Ds~~~-VR~aA~~~l~ 470 (1972)
.++..+...+++.|.... ..+..-....+..++.|.+.+. +.+.. ||..|.-+|.
T Consensus 98 ~~~~~~~~~~~lell~aAc--~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAAC--IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHT--TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 777888888888776532 2222223346888999999995 44455 7777766654
No 287
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=27.35 E-value=1.2e+03 Score=28.59 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=38.8
Q ss_pred ccHHHHHhhhcCCChhhHH-HHHHHHHHHHHhhCCCcccccch--HHHHHhhhcCCchHHHHHHHHHHHHH
Q 000167 1291 KTLPYILEGLRSKNNRTRI-ECVDLVGFLIDHHGAEISGQLKS--LQIVASLTAERDGEIRKAALNTLATG 1358 (1972)
Q Consensus 1291 kvf~~l~~gl~sKN~r~R~-ecl~~l~~li~~~G~~~~~~~k~--l~~ia~~i~drd~~VR~aAl~~l~~~ 1358 (1972)
++|..|.+-++++|+-+-. -.+.-|+++++.+.-...--.|. =..|-.+++..|+.||--||.++-++
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 4677777778888876321 12233444444432110000111 14566788999999999998877544
No 288
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=27.16 E-value=2.6e+02 Score=34.52 Aligned_cols=105 Identities=11% Similarity=0.080 Sum_probs=56.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCC-----------ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~-----------~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (1972)
.+|+++ .++..+++.+...++.++..... .....+..++..+++.++.+...++..|+.++...+...
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 44555555555555555543110 011244455567778899999999999999888765443
Q ss_pred HH---HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000167 439 VL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 439 l~---~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
.. ..++.++..+...+...+.++...|..||..+.+.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 32 34555555565555556777788888888777643
No 289
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=2.6e+02 Score=37.97 Aligned_cols=128 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHhccccc-hHHHHHHHHHHHHHHHH---HcChhhHhhhhhHHHHHHHHhCCCcHH-HHHHHHHHHHHHHHhcC--
Q 000167 896 LFGGLRGRLYDS-NKNLVMATLITLGAVAS---AMGPAVEKSSKGVLSDILKCLGDNKKH-MRECTLTVLDAWLAAVH-- 968 (1972)
Q Consensus 896 L~~~L~~~L~Ds-N~~V~~~Al~~l~~La~---alg~~~~~~~~~llp~ll~~L~D~k~~-Vr~Aa~~aL~~i~~~~~-- 968 (1972)
+-.++.+.+.|. ..-|+.+|.+++..+.. -+...|-+|.+.+.-.+++.+..-... .|....+.|.+++.+++
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q ss_pred -------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-CCChhhhHHHHHhhcCCCCH
Q 000167 969 -------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSS 1026 (1972)
Q Consensus 969 -------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~-~~~~~~ll~pl~~~L~D~~~ 1026 (1972)
+-.++|.+++.-+.. +-+|..++..|...+...+. +....+++-|++..-.|.++
T Consensus 607 I~P~~~~ivq~lp~LWe~s~~e---~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~s 669 (978)
T KOG1993|consen 607 IAPYASTIVQYLPLLWEESEEE---PLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSS 669 (978)
T ss_pred hhHHHHHHHHHHHHHHhhhccC---cHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCC
No 290
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=26.79 E-value=3e+02 Score=32.90 Aligned_cols=81 Identities=11% Similarity=0.199 Sum_probs=53.6
Q ss_pred hCCChHHHHHHHHHHHHHHhhcCCccccHHHHHhhh--cCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcC
Q 000167 1265 SGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL--RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAE 1342 (1972)
Q Consensus 1265 ~Gd~k~~vr~~v~~il~~~~~v~~~skvf~~l~~gl--~sKN~r~R~ecl~~l~~li~~~G~~~~~~~k~l~~ia~~i~d 1342 (1972)
+++.---+|-.+--++.|+..-. -.|+|.++| ..-|+=+|-||.+.||.+ +..++++.+....+|
T Consensus 196 l~~~SalfrhEvAfVfGQl~s~~----ai~~L~k~L~d~~E~pMVRhEaAeALGaI---------a~e~~~~vL~e~~~D 262 (289)
T KOG0567|consen 196 LADDSALFRHEVAFVFGQLQSPA----AIPSLIKVLLDETEHPMVRHEAAEALGAI---------ADEDCVEVLKEYLGD 262 (289)
T ss_pred cccchHHHHHHHHHHHhhccchh----hhHHHHHHHHhhhcchHHHHHHHHHHHhh---------cCHHHHHHHHHHcCC
Confidence 33333334444444444443321 234444444 456788999999999986 456788999999999
Q ss_pred CchHHHHHHHHHHHHH
Q 000167 1343 RDGEIRKAALNTLATG 1358 (1972)
Q Consensus 1343 rd~~VR~aAl~~l~~~ 1358 (1972)
-++-||.++.-+|-..
T Consensus 263 ~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 263 EERVVRESCEVALDML 278 (289)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999888777543
No 291
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=26.76 E-value=1.1e+03 Score=27.85 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=45.8
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh
Q 000167 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (1972)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~ 413 (1972)
++|.+..|+..++.|...+- |.+|..+... .- ...++. .+..+-..|+.-+.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy---------------~~~~~~i~~~--~~-------~~~~W~----~~~~lK~~Il~~~~ 53 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIY---------------PLVFRWICVN--PS-------DEQLWE----SMNELKDRILSLWD 53 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHH---------------HHHHHHHS----HH-------HHHHHH----HHHHHHHHHHHGGG
T ss_pred CCCCcHHHHHHHHHHHHHHH---------------HHHHHHHcCC--ch-------HHHHHH----HHHHHHHHHHHHhc
Confidence 56788889888888886653 3334333111 11 111111 12344566777788
Q ss_pred cCChHHHHHHHHHHHHHHHhc
Q 000167 414 NKVPLVRSLTLNWVTFCIETS 434 (1972)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~ 434 (1972)
+.||.+|..++.|+.+++-..
T Consensus 54 ~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999998654
No 292
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.66 E-value=2.7e+02 Score=40.72 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=64.4
Q ss_pred HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHh
Q 000167 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKG 796 (1972)
Q Consensus 718 vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~ 796 (1972)
...+++... .+.+++.|.-++..+..++...|-..+. +..+|+++.++ +++.+.+|-..+.+++..+-...|+.+..
T Consensus 1542 l~~k~l~~t-rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL-~ED~~~~Ve~~~q~li~q~e~~lGE~l~~ 1619 (1621)
T KOG1837|consen 1542 LNQKILKKT-RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAEL-MEDEDDEVECLCQKLIRQLEEVLGEPLQS 1619 (1621)
T ss_pred HHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 334444432 4668899999999999999999986543 56789999999 99999999999999999999999998876
Q ss_pred hh
Q 000167 797 FL 798 (1972)
Q Consensus 797 ~L 798 (1972)
|+
T Consensus 1620 y~ 1621 (1621)
T KOG1837|consen 1620 YL 1621 (1621)
T ss_pred cC
Confidence 64
No 293
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=26.38 E-value=1.3e+03 Score=28.56 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=52.6
Q ss_pred CcHHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhhcCCh--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000167 378 KKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVKNKVP--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (1972)
Q Consensus 378 kk~~V~~aa~~aL~al~~~~~~~l~~il---~~l~~~l~~Knp--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 452 (1972)
+...+|-.....+..+... |--+..|. +.+-.-+++=|+ .-+++.+.++.+.+..+.. .....+-+...|-.
T Consensus 118 ~~~~aR~~Vy~~lv~la~~-~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~--~~~s~kvmt~lLgt 194 (378)
T KOG2753|consen 118 KPTPARYQVYMSLVTLAAS-CKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKS--VDESSKVMTELLGT 194 (378)
T ss_pred CCchHHHHHHHHHHHHHhh-cceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHHHHH
Confidence 3334888888877777765 32222222 223333443333 3344667777777766543 11223444445555
Q ss_pred HhcCCChHHHHHHHHHHHHHHH
Q 000167 453 CLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 453 ~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.-+|-..+.|+.|.+|+.++.+
T Consensus 195 yt~dnas~AredA~rcV~~av~ 216 (378)
T KOG2753|consen 195 YTEDNASEAREDAMRCVVEAVK 216 (378)
T ss_pred hcccchhHHHHHHHHHHHHHHc
Confidence 5566668888888888876654
No 294
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=25.78 E-value=1.5e+03 Score=29.09 Aligned_cols=200 Identities=11% Similarity=0.052 Sum_probs=116.1
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhccccch-----hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCc
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~-----~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~ 678 (1972)
..++..+.|.|-++|..--.-|..+......... ....+++++- ....+......|+++..++.....=.
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~-----e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIY-----ETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHH-----TTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-----CcccccCHHHHHHHHHHHHhccCCCC
Confidence 4567888999999999999888888876433211 1234444442 23345567788899988887543111
Q ss_pred hhhHHHHHHHHHhhhcchh----hhHHHHHHHHHHHhhcC--hhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCC
Q 000167 679 KKCVVLCLLGISERVADIK----TRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (1972)
Q Consensus 679 ~~~~~~il~~LveKlgd~K----~r~~a~~~L~~l~e~~~--~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~ 752 (1972)
+.....++-.++--|.-++ -...-..++..+++..+ ...++..+++.. -.-|+.-..--++-+..+++.+...
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W-P~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW-PKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS--SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC-CCCCchhHHHHHHHHHHHHHhcCHH
Confidence 2333333333333333332 25667778888888643 345666666664 2345555566677777777644332
Q ss_pred CCC--hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcC
Q 000167 753 HLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 753 ~l~--~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~ 816 (1972)
.+. ..++...+..+ +++.+-.|-+.|. +-|..+.+...+.+-...++..|-..+.++
T Consensus 290 ~f~~i~~~lf~~la~c-i~S~h~qVAErAl------~~w~n~~~~~li~~~~~~i~p~i~~~L~~~ 348 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKC-ISSPHFQVAERAL------YFWNNEYFLSLISQNSRVILPIIFPALYRN 348 (409)
T ss_dssp HHHHHHHHHHHHHHHH-HTSSSHHHHHHHH------GGGGSHHHHHHHHCTHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHH-hCCCCHHHHHHHH------HHHCCHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 211 24566667776 9999998877664 456666666666665666666666555543
No 295
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=25.74 E-value=3.7e+02 Score=27.41 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=38.1
Q ss_pred hhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000167 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~ 970 (1972)
.+.+|+..++..+...+.+=.+.||..+...|+-++++++-.
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 367899999999999999999999999999999999999843
No 296
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=25.59 E-value=9.1e+02 Score=26.50 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=60.0
Q ss_pred HHHHhhcCccHHHHHHHHHHHHHhcCcchhhHHHH-HHHHHHHHHHhhcCcchHHHHHHHh-hHHHHHHHHHhcCCCCCH
Q 000167 1174 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV-LDILLRWFVLQFCKSNTTCLLKVLE-FLPELFDTLRDEGYSLTE 1251 (1972)
Q Consensus 1174 ~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~~i~~-lDlllk~~~lr~~dtN~~vl~k~Ld-~l~~l~~~l~~~~y~l~~ 1251 (1972)
.++..||+-+-.-.-+....|...++.....++.. .|++++- |...+........+ .|+.++..-....|..+-
T Consensus 18 ~fls~l~~~~~~~~~~~~~~i~~~~~~~~~~~le~y~ei~~~a----Wk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~ 93 (152)
T PF12422_consen 18 KFLSFLFSLSGIFIKKIHKLIKCQIPQVSKSVLELYGEILFRA----WKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLH 93 (152)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----hHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhH
Confidence 46666766333334445555555665555544443 4544443 55554444444444 355555544444333332
Q ss_pred HHHHhhhhHHHHhhCCChHHHHHHHHHHHHHHhhcCCccccH-HHHHhhhcCCChhhHHHHHHHHHH
Q 000167 1252 SEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTL-PYILEGLRSKNNRTRIECVDLVGF 1317 (1972)
Q Consensus 1252 ~Ea~~~lp~L~~K~Gd~k~~vr~~v~~il~~~~~v~~~skvf-~~l~~gl~sKN~r~R~ecl~~l~~ 1317 (1972)
.-..-+|-++..+- .+..+.+++- +++ |+|-.+|++.|+++|.-.+..+..
T Consensus 94 ~~~R~~L~~f~~~k------~~~~v~~mL~---------rl~~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 94 SKFREVLLSFHSQK------KRKGVDEMLL---------RLYEPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHhcc------cccchHHHHH---------HHHHHHHHHHHcCCCcchhccHHHHHHH
Confidence 22233333333222 2223333331 222 344567788888887776655544
No 297
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=25.58 E-value=1.2e+03 Score=29.48 Aligned_cols=184 Identities=16% Similarity=0.106 Sum_probs=96.7
Q ss_pred hccCChHHHHHHHHHHHH-Hhc--CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh--chhhhhhhHH
Q 000167 294 VKATKWSERKDAVAELTK-LAS--TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT--HFSGSSRFLL 368 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~-l~~--~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~--~f~~~~~~ll 368 (1972)
..++.-++|.++|+.+.- +++ -|++...+..++...+.+.++...+---..+...++.++--++. .-+-......
T Consensus 69 ~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~ 148 (427)
T KOG2842|consen 69 VKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLG 148 (427)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccc
Confidence 467888999999999865 333 34444567888999999999855554455556667777766552 2223334444
Q ss_pred HHHHHHhccCc--HHHHHHHHHHHHHHHH-h-cC-CChHhHHHHH---H--HHhhc--CChHHHHHHHHHHHHHHHh---
Q 000167 369 PVLLEKLKEKK--PTVAESLTQTLQAMHK-A-GC-LNLVDVVEDV---K--TSVKN--KVPLVRSLTLNWVTFCIET--- 433 (1972)
Q Consensus 369 p~LL~klkdkk--~~V~~aa~~aL~al~~-~-~~-~~l~~il~~l---~--~~l~~--Knp~vR~~~l~~L~~~l~~--- 433 (1972)
|.+..-+-+.. ...+..+..|+...+- . ++ .-+..++..+ . ..+.. ..+.+=......+..|+..
T Consensus 149 ~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~ 228 (427)
T KOG2842|consen 149 PFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSL 228 (427)
T ss_pred hHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHH
Confidence 44444444433 3334444333332221 1 11 0011111111 1 11111 1111111222222222222
Q ss_pred ----cChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000167 434 ----SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 434 ----~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
++.+........+.|-+..+|.--..++|.++.+++..+..+..
T Consensus 229 ~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q 276 (427)
T KOG2842|consen 229 LLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQ 276 (427)
T ss_pred HHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHh
Confidence 22221222234467888899888888999999999988887754
No 298
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=25.48 E-value=78 Score=40.64 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=38.0
Q ss_pred cCChhhHHHHHHHHHHHHHHh--CCCccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHH
Q 000167 139 NKVAKAVVPAIDVMFQALSEF--GAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1972)
Q Consensus 139 ~KnpKv~~~~l~~l~~~l~~f--G~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1972)
+..|.+++-|+.=|.+.++.| |-.++.--..-..+.+++.|.|++||.+|..+++.|.
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 345566655666666666665 3322210012345778999999999999999988774
No 299
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=23.82 E-value=5e+02 Score=29.59 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=72.0
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC---ChHhHHHHHHHHhh-----cCChHHHHHHHHHHHHHHHh
Q 000167 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL---NLVDVVEDVKTSVK-----NKVPLVRSLTLNWVTFCIET 433 (1972)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~---~l~~il~~l~~~l~-----~Knp~vR~~~l~~L~~~l~~ 433 (1972)
.++..++..|+....||--.||..|..++..++.+... .++ -.+.+...+. +-+|..=.++...+..++.
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~- 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-
Confidence 45678889999999999999999999999999943111 011 1122322222 1234433444444433332
Q ss_pred cChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHH--hCchhHHHhHhhc
Q 000167 434 SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS--VGMRPLERSIEKL 488 (1972)
Q Consensus 434 ~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~--~ge~~~~~~l~~L 488 (1972)
+..+...++..++--.+.....+..+|..+|..++.- -+...+..++..|
T Consensus 81 -----~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l 132 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDL 132 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1233455666666667888888888888888887763 3333344444443
No 300
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=23.75 E-value=84 Score=32.61 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=28.6
Q ss_pred hhHHHHHHhhhchhhhhhccCCChhHHHHHHHHHHHhhChHHHhhccCCCCCChhHHHHHHHHHHH
Q 000167 1639 SDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVK 1704 (1972)
Q Consensus 1639 ~eLv~KClwk~~k~l~~~~~~~~~~~il~~ih~fl~~~p~~~~~~r~~~~d~plRtvKtil~~l~k 1704 (1972)
..-||+|||+... +. ..+||+-|..- -+...-||+|+|..|++
T Consensus 5 E~~IM~~lW~~~~-~t-----------~~eI~~~l~~~-----------~~~~~sTv~t~L~rL~~ 47 (115)
T PF03965_consen 5 ELEIMEILWESGE-AT-----------VREIHEALPEE-----------RSWAYSTVQTLLNRLVE 47 (115)
T ss_dssp HHHHHHHHHHHSS-EE-----------HHHHHHHHCTT-----------SS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CC-----------HHHHHHHHHhc-----------cccchhHHHHHHHHHHh
Confidence 4579999999864 21 23555555431 23466899999999988
No 301
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=23.60 E-value=8.7e+02 Score=30.42 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.0
Q ss_pred HhhhhhhcCCChhHHHHHHHHHHHHHH
Q 000167 171 KMLPELFDHQDQNVRASSKGLTLELCR 197 (1972)
Q Consensus 171 ~~l~~ll~~~d~~VR~~a~~l~~ely~ 197 (1972)
.|.|.||.+.|..||+.+..++.+++-
T Consensus 241 ~WAP~LL~y~d~~VR~~Te~fL~~~lF 267 (337)
T PF12030_consen 241 DWAPGLLGYPDRSVRNGTEDFLQELLF 267 (337)
T ss_pred ccchHhhCCCchhHHHHHHHHHHHHhC
Confidence 478899999999999999999988663
No 302
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=23.13 E-value=6.6e+02 Score=35.33 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=48.0
Q ss_pred hhcCChHHHHHHHHHHHHHHHhcChhHHHHhh--hhHHHHHHHHhcCCChHHHHHHHHHHHHHH--HHhCchhHHHhHhh
Q 000167 412 VKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLERSIEK 487 (1972)
Q Consensus 412 l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~--~~~ge~~~~~~l~~ 487 (1972)
|=|..|..|+.++..|..+-.. ++ .....+ -.++-.+--.++-.++.+|.+|.+.|+.+. +..|.+..-.++.=
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~-~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSN-GQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcC-cH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 3488899999999999875432 21 111111 112333334457778999999999999887 56777653334433
Q ss_pred ccHH
Q 000167 488 LDDV 491 (1972)
Q Consensus 488 Ld~~ 491 (1972)
|.+.
T Consensus 1899 LP~~ 1902 (2235)
T KOG1789|consen 1899 LPEI 1902 (2235)
T ss_pred chHH
Confidence 4433
No 303
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.11 E-value=1.8e+02 Score=33.39 Aligned_cols=91 Identities=22% Similarity=0.298 Sum_probs=70.2
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHh--cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH---hhhchhh
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLA--STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSG 362 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~--~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~---L~~~f~~ 362 (1972)
+-|.+.+.+.+.-.|.=|-+.+..++ .+.++.+- +..|+.-|+..+.-.|..|...++++|..|... .|...-|
T Consensus 117 p~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpV-LPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVP 195 (262)
T KOG3961|consen 117 PLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPV-LPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVP 195 (262)
T ss_pred HHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccc-cHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 36899999999988888888887754 45555553 567889999999977888888888888888753 5688889
Q ss_pred hhhhHHHHHHHHhccCcH
Q 000167 363 SSRFLLPVLLEKLKEKKP 380 (1972)
Q Consensus 363 ~~~~llp~LL~klkdkk~ 380 (1972)
|-++++|. +..+|.++-
T Consensus 196 fYRQlLp~-~n~~k~~n~ 212 (262)
T KOG3961|consen 196 FYRQLLPV-LNTFKNSNV 212 (262)
T ss_pred HHHHhhhh-hhhhccccc
Confidence 99999975 455666643
No 304
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=22.79 E-value=4.4e+02 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHhcCCC----hHHHHHHHHHHHHHHHHhC
Q 000167 443 HKDYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 443 l~~l~p~l~k~l~Ds~----~~VR~aA~~~l~~l~~~~g 477 (1972)
.+.++..+.++++... .++...+.+|+..+...++
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~ 118 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP 118 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC
Confidence 4556666666665544 7888888888888777443
No 305
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=22.31 E-value=1.1e+03 Score=31.60 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=29.8
Q ss_pred cccchHHHHHhhhcCCchHHHHHHHHHHHHHHHHhC
Q 000167 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILG 1363 (1972)
Q Consensus 1328 ~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G 1363 (1972)
|..+.+..+...+.+.|.++|..|-.+....|.-..
T Consensus 141 Ge~~~l~~~~~~l~~~dr~~Rk~a~~a~~~~~~~~~ 176 (549)
T TIGR02289 141 GEEKTLSQLKPYLQDPNRSTRKKAWYARSEFFAVVE 176 (549)
T ss_pred CEeccHHHhhHHhhCCCHHHHHHHHHHHHHHHhcCc
Confidence 555678889999999999999999999988776543
No 306
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=21.75 E-value=4.2e+02 Score=27.84 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHh--cCCChHhHHHHHHHHh---hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh-------
Q 000167 387 TQTLQAMHKA--GCLNLVDVVEDVKTSV---KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL------- 454 (1972)
Q Consensus 387 ~~aL~al~~~--~~~~l~~il~~l~~~l---~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l------- 454 (1972)
...+..|... .+..+..|++.|..-| ++++|.+..-+|..|..++.+-+...+... ..-...|..+.
T Consensus 21 ~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~-~~~~~~I~~l~~f~~~d~ 99 (125)
T PF01417_consen 21 GKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDEL-RDHIDIIRELQDFQYVDP 99 (125)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHH-HHTHHHHHGGGG---BBT
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHhhcceeeccCC
Q ss_pred --cCCChHHHHHHHHHHHHH
Q 000167 455 --NDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 455 --~Ds~~~VR~aA~~~l~~l 472 (1972)
.|....||+.|.+.+..+
T Consensus 100 ~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 100 KGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp TSTBHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHh
No 307
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=21.10 E-value=4.5e+02 Score=28.88 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.2
Q ss_pred hhhHHH-HHhhcCCCCHHHHHHHHHHHHH
Q 000167 1011 AHLLKP-ASIAMTDKSSDVRKAAEACIVE 1038 (1972)
Q Consensus 1011 ~~ll~p-l~~~L~D~~~dVR~aA~~~l~~ 1038 (1972)
..+..| |..+|.-+|+.||..|...+..
T Consensus 117 ~rl~~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 117 LRLYEPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHHcCCCcchhccHHHHHHH
Confidence 456788 8889999999999999877654
No 308
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=20.74 E-value=4.4e+02 Score=27.44 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=40.9
Q ss_pred hHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 000167 401 LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 401 l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
+..++|.+..+++ .+++..|.++.-.+..+..+.+-+ .+.++.++..+.+....... ...+.-|+..+++.-
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~--~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS--DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 4556777777777 667777777777776665544311 12345555555555544444 344555555555443
No 309
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.73 E-value=7.2e+02 Score=28.34 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=76.4
Q ss_pred CChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCC-----cHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHH
Q 000167 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-----NAPVQDKALDALIAYLKAADADAGRYAKEVCDA 97 (1972)
Q Consensus 23 k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds-----N~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~ 97 (1972)
|.=+.|..|..-+...+... .+.-|.+. ..+.+.+..... |.......+..+..++. ...|...++.+
T Consensus 19 KiDrvR~~A~~~l~~ll~~~-~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-----~~~y~~~ll~G 91 (193)
T PF12612_consen 19 KIDRVREVAGKCLQRLLHSQ-DPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD-----LPEYRYSLLSG 91 (193)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-----cHHHHHHHHhH
Confidence 44478999999999888432 22111111 222333332222 23334444444444432 23577789999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHH
Q 000167 98 IAAKCLTGRPKTVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSE 158 (1972)
Q Consensus 98 LveK~l~~k~~~k~~a~~~ll~~~E~-----~~~~~v~~~L~~~~~--~KnpKv~~~~l~~l~~~l~~ 158 (1972)
||--..+.-..+...|...++.|+.- +..+.++..|..-+. .++.+++...+..+..++..
T Consensus 92 lv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 92 LVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 98876555677888888888999841 123566666665554 35677777777777776664
No 310
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.53 E-value=6.7e+02 Score=33.79 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhcc----CcHHHHHHHHHHHHHHHHhcCCCh--------HhHHHHHHHH
Q 000167 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE----KKPTVAESLTQTLQAMHKAGCLNL--------VDVVEDVKTS 411 (1972)
Q Consensus 344 ~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkd----kk~~V~~aa~~aL~al~~~~~~~l--------~~il~~l~~~ 411 (1972)
.|.+++..+...++.. -..++..+++.++. +.+.++..+.-++.+++...|... ..+++.+...
T Consensus 375 ea~~~~~~~~~~~~~P----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~ 450 (574)
T smart00638 375 EAAQLLAVLPHTARYP----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHEL 450 (574)
T ss_pred HHHHHHHHHHHhhhcC----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Confidence 4445555555444322 23445555555543 455788888888888876435332 3344444433
Q ss_pred hh----cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHhCch
Q 000167 412 VK----NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN---DGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 412 l~----~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~---Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
++ .++...+.-.+.. +.+.+ ++..++.+.+.+. +....+|-+|..+|..+.......
T Consensus 451 l~~~~~~~~~~~~~~~Lka----LGN~g-------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~ 514 (574)
T smart00638 451 LQQAVSKGDEEEIQLYLKA----LGNAG-------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK 514 (574)
T ss_pred HHHHHhcCCchheeeHHHh----hhccC-------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH
Confidence 32 2333222222222 22222 1333444444443 445689999999998776655543
No 311
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=20.24 E-value=6.8e+02 Score=40.17 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=99.2
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhch--------hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 000167 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF--------SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM 393 (1972)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f--------~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al 393 (1972)
|-.-++++|...++..|+.+...+..|+..+...+-.-+ -|....+++.++..|-++--.-+.....++.++
T Consensus 981 D~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l 1060 (3550)
T KOG0889|consen 981 DPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCL 1060 (3550)
T ss_pred CHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeee
Confidence 445678899999999999999999999988876543221 266777777777778777666666666677766
Q ss_pred HHhcCCChH---hHHHHHHHHh----h---cCChHHHH----HHHHHHHHHHHh-cCh-hHHHHhhhhHHHHHHHHhcCC
Q 000167 394 HKAGCLNLV---DVVEDVKTSV----K---NKVPLVRS----LTLNWVTFCIET-SSK-AAVLKVHKDYVPICMECLNDG 457 (1972)
Q Consensus 394 ~~~~~~~l~---~il~~l~~~l----~---~Knp~vR~----~~l~~L~~~l~~-~~~-~~l~~~l~~l~p~l~k~l~Ds 457 (1972)
+.+ .+.. ++..++..++ + ...+..+. .++.++.+.... ... ..-.+....++..++..|-++
T Consensus 1061 ~~~--~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~np 1138 (3550)
T KOG0889|consen 1061 IES--MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNP 1138 (3550)
T ss_pred hhh--chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 664 3322 2222333322 2 22232222 222222222222 111 111134566777888899999
Q ss_pred ChHHHHHHHHHHHHHHHHhCch
Q 000167 458 TPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 458 ~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
+..||+.+.++|..++...|-.
T Consensus 1139 N~~VR~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1139 NSDVREFSQKLLRLISELSGKS 1160 (3550)
T ss_pred chHHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999754
No 312
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.18 E-value=2.5e+03 Score=29.65 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=70.9
Q ss_pred HHHHHhhhcCC-----hHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccc--hHHHHHHHHHHHHHHHHHcCC
Q 000167 604 ADTVGQLKSAV-----WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEK--NVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 604 ~~l~~~L~s~~-----Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~Ds--N~qV~~~~Le~l~~l~~~~~~ 676 (1972)
..+-+.+.+.+ |..=.+.+-.++++.+.++.. ....+.+.+...+..+-+ |.+....+.+.+..+.....+
T Consensus 465 ~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t--~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e 542 (982)
T KOG2022|consen 465 DTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET--ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE 542 (982)
T ss_pred HHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc--hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc
Confidence 34445556666 776666666666666665443 233455555433444444 888888888888777765443
Q ss_pred CchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcC
Q 000167 677 FPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG 714 (1972)
Q Consensus 677 ~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~ 714 (1972)
.. -.++..+|.|+.-++.+|....+...|..+|+-+.
T Consensus 543 ~P-~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~ 579 (982)
T KOG2022|consen 543 HP-MYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCP 579 (982)
T ss_pred CC-cccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhh
Confidence 32 34667889999999998988888888888887653
Done!