Query 000167
Match_columns 1972
No_of_seqs 428 out of 1438
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 21:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 100.0 4E-56 1.4E-60 514.3 28.4 257 1129-1389 2-265 (266)
2 2qk1_A Protein STU2; STU2P, XM 100.0 7.5E-34 2.6E-38 333.0 29.3 231 270-502 2-248 (249)
3 4ffb_C Protein STU2; tubulin f 100.0 8.7E-34 3E-38 339.3 22.2 232 1-234 1-251 (278)
4 1u6g_C TIP120 protein, CAND1; 100.0 1.3E-24 4.5E-29 311.8 86.0 833 15-1044 10-963 (1230)
5 2qk2_A LP04448P; mini spindles 100.0 5E-29 1.7E-33 291.8 23.8 230 271-503 2-234 (242)
6 1u6g_C TIP120 protein, CAND1; 100.0 8.4E-25 2.9E-29 313.8 68.9 911 16-1045 53-1136(1230)
7 4fdd_A Transportin-1; heat rep 99.9 2.2E-22 7.4E-27 278.1 71.6 771 17-1065 19-848 (852)
8 2qk1_A Protein STU2; STU2P, XM 99.9 3.3E-25 1.1E-29 259.7 23.0 227 841-1070 4-249 (249)
9 2bpt_A Importin beta-1 subunit 99.9 2.8E-21 9.7E-26 266.9 65.5 755 17-1043 10-859 (861)
10 4fdd_A Transportin-1; heat rep 99.9 3.4E-21 1.2E-25 266.2 65.2 707 98-1045 18-788 (852)
11 1b3u_A Protein (protein phosph 99.9 1E-22 3.5E-27 268.5 42.8 552 289-1039 14-585 (588)
12 2bpt_A Importin beta-1 subunit 99.9 3.2E-20 1.1E-24 256.3 64.4 702 18-967 102-859 (861)
13 1qgr_A Protein (importin beta 99.9 1.4E-19 4.7E-24 250.6 67.0 721 61-1041 10-871 (876)
14 2qk2_A LP04448P; mini spindles 99.9 2.1E-23 7.2E-28 244.1 22.8 228 842-1072 4-236 (242)
15 1qgr_A Protein (importin beta 99.9 5.6E-19 1.9E-23 244.4 65.7 728 17-998 7-867 (876)
16 2of3_A ZYG-9; multifunctional 99.9 6.4E-22 2.2E-26 229.0 25.0 217 593-816 38-264 (266)
17 1b3u_A Protein (protein phosph 99.9 3.3E-20 1.1E-24 244.6 43.7 555 15-786 14-585 (588)
18 4ffb_C Protein STU2; tubulin f 99.9 9.7E-23 3.3E-27 243.6 16.7 218 606-827 14-255 (278)
19 1ibr_B P95, importin beta-1 su 99.5 6.5E-11 2.2E-15 150.8 37.7 377 605-1045 5-441 (462)
20 1ibr_B P95, importin beta-1 su 99.4 7.2E-11 2.5E-15 150.3 35.1 380 17-478 7-441 (462)
21 2vgl_B AP-2 complex subunit be 99.2 8.9E-09 3E-13 135.9 38.6 479 360-1045 7-497 (591)
22 2vgl_B AP-2 complex subunit be 99.2 2.7E-08 9.1E-13 131.3 40.0 492 289-961 17-528 (591)
23 2iw3_A Elongation factor 3A; a 99.2 2.2E-10 7.6E-15 154.2 18.9 195 290-488 19-218 (986)
24 2jdq_A Importin alpha-1 subuni 99.2 5.7E-09 2E-13 132.4 30.1 391 8-473 12-442 (450)
25 1wa5_B Importin alpha subunit; 99.1 1.2E-08 4.3E-13 132.8 30.2 382 16-474 92-510 (530)
26 2x1g_F Cadmus; transport prote 99.1 2E-06 6.9E-11 120.3 52.5 699 103-1042 17-859 (971)
27 2jdq_A Importin alpha-1 subuni 99.0 7.6E-09 2.6E-13 131.3 23.6 377 603-1040 22-442 (450)
28 2x19_B Importin-13; nuclear tr 99.0 6.2E-05 2.1E-09 105.2 64.5 354 611-1053 459-859 (963)
29 1wa5_B Importin alpha subunit; 99.0 6.6E-09 2.2E-13 135.4 20.7 378 603-1042 89-511 (530)
30 1w63_A Adapter-related protein 99.0 1.2E-06 4.1E-11 116.1 42.5 461 399-1039 66-575 (618)
31 2x19_B Importin-13; nuclear tr 99.0 0.00033 1.1E-08 97.8 68.7 594 296-1053 36-725 (963)
32 4b8j_A Importin subunit alpha- 99.0 8.8E-08 3E-12 124.6 30.2 385 16-475 79-497 (528)
33 2x1g_F Cadmus; transport prote 99.0 9.5E-05 3.2E-09 103.4 62.4 574 296-1052 51-732 (971)
34 4b8j_A Importin subunit alpha- 99.0 1.6E-08 5.6E-13 131.5 22.3 379 604-1042 77-497 (528)
35 1w63_A Adapter-related protein 98.9 1.8E-06 6.1E-11 114.4 41.7 341 31-473 11-378 (618)
36 1wa5_C Importin alpha RE-expor 98.9 0.00016 5.4E-09 101.0 60.3 328 613-968 417-794 (960)
37 2z6g_A B-catenin; FULL-length, 98.9 1.2E-06 4.2E-11 119.1 36.7 492 368-1045 117-667 (780)
38 2z6g_A B-catenin; FULL-length, 98.9 2.9E-06 1E-10 115.4 39.5 518 289-968 119-666 (780)
39 3now_A UNC-45 protein, SD10334 98.6 7.8E-05 2.7E-09 99.6 41.9 610 295-1041 18-737 (810)
40 2z6h_A Catenin beta-1, beta-ca 98.6 1.7E-05 5.9E-10 105.7 36.0 487 326-968 15-530 (644)
41 2iw3_A Elongation factor 3A; a 98.6 9.7E-08 3.3E-12 128.9 13.7 194 857-1055 18-218 (986)
42 1jdh_A Beta-catenin; beta-cate 98.6 2.2E-05 7.6E-10 101.5 34.4 482 326-963 18-528 (529)
43 2z6h_A Catenin beta-1, beta-ca 98.6 6.8E-05 2.3E-09 99.9 39.6 460 404-1044 15-530 (644)
44 1wa5_C Importin alpha RE-expor 98.6 0.00031 1.1E-08 98.0 46.4 334 658-1053 376-760 (960)
45 3tpo_A Importin subunit alpha- 98.5 1.1E-05 3.8E-10 104.9 28.1 375 604-1039 79-495 (529)
46 3ul1_B Importin subunit alpha- 98.5 7.7E-06 2.6E-10 105.9 25.5 375 604-1039 60-476 (510)
47 1jdh_A Beta-catenin; beta-cate 98.5 0.00014 4.7E-09 94.1 36.9 368 605-1039 105-528 (529)
48 3ul1_B Importin subunit alpha- 98.5 1.6E-05 5.4E-10 102.9 27.8 380 288-787 60-477 (510)
49 3tpo_A Importin subunit alpha- 98.4 3.6E-05 1.2E-09 100.1 29.8 377 288-787 79-496 (529)
50 3m1i_C Exportin-1; heat repeat 98.4 0.0049 1.7E-07 86.8 52.3 694 98-968 21-836 (1049)
51 2vgl_A Adaptor protein complex 98.4 0.00024 8.1E-09 93.9 36.4 158 30-199 11-179 (621)
52 3ltm_A Alpha-REP4; protein eng 98.4 4.4E-06 1.5E-10 94.6 17.1 179 288-502 22-200 (211)
53 2vgl_A Adaptor protein complex 98.4 0.00061 2.1E-08 90.0 39.6 178 856-1045 371-554 (621)
54 3ltj_A Alpharep-4; protein eng 98.4 5.3E-06 1.8E-10 93.1 17.2 149 288-472 17-165 (201)
55 3ltm_A Alpha-REP4; protein eng 98.4 8.6E-06 2.9E-10 92.1 18.6 182 855-1071 21-202 (211)
56 3ltj_A Alpharep-4; protein eng 98.3 1E-05 3.4E-10 90.8 18.8 177 854-1069 15-195 (201)
57 1oyz_A Hypothetical protein YI 98.3 5.3E-05 1.8E-09 89.6 24.2 93 686-788 25-120 (280)
58 3m1i_C Exportin-1; heat repeat 98.3 0.063 2.1E-06 75.5 59.5 494 297-946 61-642 (1049)
59 3now_A UNC-45 protein, SD10334 98.2 0.00016 5.3E-09 96.8 28.8 378 16-474 295-737 (810)
60 4db6_A Armadillo repeat protei 98.1 2.4E-05 8.4E-10 88.1 14.0 184 289-473 16-208 (210)
61 1oyz_A Hypothetical protein YI 98.0 0.0001 3.5E-09 87.1 18.7 162 289-473 58-220 (280)
62 4db8_A Armadillo-repeat protei 98.0 4.4E-05 1.5E-09 88.5 14.7 183 288-473 15-208 (252)
63 3ibv_A Exportin-T; karyopherin 98.0 0.1 3.4E-06 72.4 50.4 287 697-1016 458-784 (980)
64 2db0_A 253AA long hypothetical 98.0 0.00046 1.6E-08 73.2 19.6 198 292-501 39-242 (253)
65 4hxt_A De novo protein OR329; 97.8 0.00037 1.3E-08 80.3 18.9 189 289-479 48-246 (252)
66 3ibv_A Exportin-T; karyopherin 97.8 0.1 3.5E-06 72.3 46.1 611 297-1053 20-779 (980)
67 4hat_C Exportin-1; heat repeat 97.8 0.086 2.9E-06 73.2 45.3 198 298-500 429-645 (1023)
68 4hxt_A De novo protein OR329; 97.8 0.00016 5.4E-09 83.4 15.5 184 289-474 6-199 (252)
69 4db8_A Armadillo-repeat protei 97.8 6.2E-05 2.1E-09 87.3 10.9 184 289-474 58-251 (252)
70 4db6_A Armadillo repeat protei 97.7 7.5E-05 2.6E-09 84.0 10.3 184 855-1040 14-208 (210)
71 2db0_A 253AA long hypothetical 97.5 0.0059 2E-07 64.9 19.1 167 854-1041 33-210 (253)
72 1xqr_A HSPBP1 protein; armadil 97.5 0.0012 4.2E-08 78.7 16.1 173 300-475 55-239 (296)
73 3b2a_A TON_1937, putative unch 97.4 0.0027 9.1E-08 70.6 16.0 180 289-474 79-261 (265)
74 3b2a_A TON_1937, putative unch 97.2 0.0055 1.9E-07 68.2 16.3 181 857-1041 37-218 (265)
75 3oc3_A Helicase MOT1, MOT1; re 96.9 0.003 1E-07 77.7 11.5 150 288-473 177-327 (800)
76 3l6x_A Catenin delta-1; cateni 96.9 0.4 1.4E-05 62.1 31.8 374 55-482 51-481 (584)
77 1xqr_A HSPBP1 protein; armadil 96.8 0.0073 2.5E-07 71.9 13.2 169 868-1042 55-239 (296)
78 1te4_A Conserved protein MTH18 96.7 0.00022 7.7E-09 74.2 -0.7 119 325-471 12-130 (131)
79 3opb_A SWI5-dependent HO expre 96.6 0.29 9.8E-06 64.6 26.9 362 604-1041 299-728 (778)
80 3a6p_A Exportin-5; exportin-5, 96.4 7.1 0.00024 55.3 49.5 378 685-1071 250-736 (1204)
81 3tjz_B Coatomer subunit gamma; 96.4 0.051 1.8E-06 65.9 17.0 281 675-1036 59-348 (355)
82 3l6x_A Catenin delta-1; cateni 96.3 0.41 1.4E-05 61.9 26.0 372 638-1040 49-475 (584)
83 1xm9_A Plakophilin 1; armadill 96.2 0.34 1.2E-05 61.3 24.7 387 57-473 7-448 (457)
84 3tjz_B Coatomer subunit gamma; 96.0 0.066 2.2E-06 64.9 15.5 186 271-474 17-205 (355)
85 3opb_A SWI5-dependent HO expre 95.9 1 3.5E-05 59.5 26.9 376 15-475 299-729 (778)
86 4hat_C Exportin-1; heat repeat 95.7 12 0.0004 52.1 57.9 177 865-1069 465-647 (1023)
87 3a6p_A Exportin-5; exportin-5, 95.7 13 0.00045 52.6 46.0 187 298-490 60-293 (1204)
88 1xm9_A Plakophilin 1; armadill 95.7 0.37 1.3E-05 60.9 21.2 267 130-474 4-360 (457)
89 4gmo_A Putative uncharacterize 95.5 3.1 0.0001 55.3 30.1 90 8-99 31-125 (684)
90 3oc3_A Helicase MOT1, MOT1; re 95.4 0.11 3.7E-06 64.4 13.6 147 854-1040 175-327 (800)
91 4ady_A RPN2, 26S proteasome re 95.3 1.3 4.6E-05 59.6 25.0 256 731-1040 450-718 (963)
92 1te4_A Conserved protein MTH18 94.9 0.021 7.2E-07 59.0 5.3 85 856-961 45-129 (131)
93 1vsy_5 Proteasome activator BL 94.8 1.6 5.3E-05 60.2 24.4 397 54-478 510-970 (997)
94 3nmw_A APC variant protein; AR 94.7 0.26 8.8E-06 60.1 14.8 189 289-478 131-338 (354)
95 4ady_A RPN2, 26S proteasome re 93.8 3.4 0.00012 55.8 23.5 157 295-473 369-536 (963)
96 3nmz_A APC variant protein; pr 93.6 0.61 2.1E-05 58.7 15.5 187 289-476 247-452 (458)
97 3gjx_A Exportin-1; transport, 93.5 6.5 0.00022 54.5 26.5 150 912-1067 690-880 (1073)
98 3nmw_A APC variant protein; AR 93.4 0.6 2.1E-05 56.8 14.4 172 301-473 100-291 (354)
99 3gs3_A Symplekin, LD45768P; he 93.3 8.2 0.00028 44.4 22.9 127 300-432 30-173 (257)
100 3nmz_A APC variant protein; pr 93.0 0.65 2.2E-05 58.5 14.4 172 301-473 216-407 (458)
101 3grl_A General vesicular trans 92.8 3.6 0.00012 53.1 20.5 309 679-1040 16-393 (651)
102 1lrv_A LRV, leucine-rich repea 92.5 0.036 1.2E-06 63.8 1.7 186 723-1036 55-241 (244)
103 1mhq_A ADP-ribosylation factor 92.4 1.2 4.1E-05 47.0 13.1 111 862-981 14-132 (148)
104 1x5b_A Signal transducing adap 92.4 0.91 3.1E-05 48.7 12.2 98 862-968 28-128 (163)
105 3gjx_A Exportin-1; transport, 92.1 23 0.00078 49.2 28.8 175 326-500 478-671 (1073)
106 3g2s_A C-terminal fragment of 92.0 1.7 5.7E-05 45.9 13.5 98 862-968 24-129 (149)
107 3ldz_A STAM-1, signal transduc 91.7 0.7 2.4E-05 48.3 10.2 98 862-968 18-117 (140)
108 3o2t_A Symplekin; heat repeat, 90.5 9.7 0.00033 46.3 19.9 127 300-432 40-183 (386)
109 3g2s_A C-terminal fragment of 90.1 0.61 2.1E-05 49.2 7.9 77 125-201 45-130 (149)
110 1vsy_5 Proteasome activator BL 89.9 75 0.0026 43.7 42.5 423 891-1365 504-971 (997)
111 1juq_A ADP-ribosylation factor 89.8 2.1 7.3E-05 46.2 12.1 110 863-981 27-144 (171)
112 3gs3_A Symplekin, LD45768P; he 88.2 28 0.00095 40.0 20.6 151 857-1040 19-172 (257)
113 3ldz_A STAM-1, signal transduc 88.1 1.2 4E-05 46.6 8.3 77 125-201 39-118 (140)
114 1juq_A ADP-ribosylation factor 87.6 0.91 3.1E-05 49.1 7.3 77 125-201 47-132 (171)
115 1mhq_A ADP-ribosylation factor 86.5 1.9 6.6E-05 45.4 8.9 77 125-201 35-120 (148)
116 1elk_A Target of MYB1; superhe 86.4 3.7 0.00013 43.7 11.1 98 862-968 29-133 (157)
117 3o2t_A Symplekin; heat repeat, 86.4 20 0.00069 43.6 18.9 142 868-1040 40-182 (386)
118 1x5b_A Signal transducing adap 86.2 4.8 0.00016 43.1 12.0 81 399-479 48-130 (163)
119 3zyq_A Hepatocyte growth facto 85.6 6.2 0.00021 44.6 13.2 98 862-968 21-121 (226)
120 3l9t_A Putative uncharacterize 83.5 7.1 0.00024 44.0 12.1 148 894-1054 70-219 (240)
121 3tt9_A Plakophilin-2; cell adh 83.5 10 0.00035 43.1 13.8 144 327-474 10-180 (233)
122 1dvp_A HRS, hepatocyte growth 83.3 4.6 0.00016 45.5 10.8 98 862-968 18-118 (220)
123 3u0r_A Apoptosis inhibitor 5; 81.7 7.1 0.00024 48.3 12.1 129 323-460 63-192 (507)
124 3l9t_A Putative uncharacterize 80.8 11 0.00039 42.4 12.4 150 323-487 69-219 (240)
125 3tt9_A Plakophilin-2; cell adh 78.5 13 0.00045 42.1 12.4 110 364-475 6-125 (233)
126 1upk_A MO25 protein; transfera 78.1 59 0.002 38.5 17.8 204 290-503 83-309 (341)
127 1lrv_A LRV, leucine-rich repea 76.7 1 3.4E-05 51.8 2.5 114 292-470 129-242 (244)
128 1elk_A Target of MYB1; superhe 72.3 35 0.0012 36.1 12.9 82 398-479 48-135 (157)
129 4gmo_A Putative uncharacterize 71.6 4.8 0.00017 53.4 7.5 77 403-480 35-111 (684)
130 3zyq_A Hepatocyte growth facto 70.7 30 0.001 38.9 12.7 82 398-479 40-123 (226)
131 3rru_A TOM1L1 protein; structu 70.5 11 0.00037 39.8 8.4 98 862-968 29-133 (152)
132 4atg_A TAF6; transcription, TF 70.3 47 0.0016 36.5 13.5 131 605-744 15-159 (196)
133 1dvp_A HRS, hepatocyte growth 67.4 34 0.0012 38.3 12.3 95 294-395 18-115 (220)
134 3grl_A General vesicular trans 66.6 90 0.0031 40.4 17.0 169 293-485 29-204 (651)
135 3rru_A TOM1L1 protein; structu 65.8 9.7 0.00033 40.2 6.8 77 125-201 50-134 (152)
136 1vdy_A Hypothetical protein (R 63.2 8.5 0.00029 39.9 5.6 96 297-396 23-131 (140)
137 1vdy_A Hypothetical protein (R 63.0 7.4 0.00025 40.3 5.1 101 860-965 18-130 (140)
138 3u0r_A Apoptosis inhibitor 5; 59.7 62 0.0021 40.2 13.1 139 322-479 30-168 (507)
139 4atg_A TAF6; transcription, TF 55.9 1.1E+02 0.0037 33.6 13.0 72 300-375 23-96 (196)
140 4flb_A Regulation of nuclear P 52.7 79 0.0027 32.1 10.9 103 364-473 6-111 (132)
141 1upk_A MO25 protein; transfera 47.9 76 0.0026 37.6 10.9 119 289-408 168-295 (341)
142 1w9c_A CRM1 protein, exportin 47.6 1.3E+02 0.0045 35.4 12.9 157 300-458 44-228 (321)
143 1sz9_A PCF11 protein; RNA poly 46.4 1.1E+02 0.0038 31.8 10.8 92 377-473 22-113 (144)
144 3dad_A FH1/FH2 domain-containi 45.5 3.7E+02 0.013 31.9 16.2 125 857-983 164-304 (339)
145 3d9j_A RNA-binding protein 16; 41.0 96 0.0033 32.2 9.4 113 370-483 9-130 (145)
146 1w9c_A CRM1 protein, exportin 38.8 3.6E+02 0.012 31.8 14.7 114 364-477 67-199 (321)
147 3dad_A FH1/FH2 domain-containi 36.6 6E+02 0.021 30.1 16.1 131 372-502 166-316 (339)
148 2jak_A Serine/threonine-protei 33.2 2.3E+02 0.0078 34.4 12.1 185 290-485 179-371 (392)
149 1lsh_A Lipovitellin (LV-1N, LV 28.5 3E+02 0.01 38.2 14.0 161 866-1044 408-579 (1056)
150 3fga_B Serine/threonine-protei 28.3 8.8E+02 0.03 29.4 17.8 187 290-487 134-328 (403)
151 4fu3_A Regulation of nuclear P 27.7 1.6E+02 0.0056 29.8 8.5 66 364-434 5-70 (135)
152 1ho8_A Vacuolar ATP synthase s 27.1 1.3E+02 0.0045 37.4 8.8 59 415-475 417-477 (480)
153 3eg5_B Protein diaphanous homo 26.9 3.6E+02 0.012 32.7 12.7 51 381-432 135-191 (383)
154 2km4_A Regulator of TY1 transp 26.0 2E+02 0.0067 29.7 8.7 103 365-472 5-113 (142)
155 2npp_B PP2A, B subunit, serine 25.2 4.3E+02 0.015 32.6 12.9 186 290-486 167-360 (449)
156 1lsh_A Lipovitellin (LV-1N, LV 22.6 1.6E+03 0.056 30.7 23.4 121 858-1000 445-574 (1056)
157 2rg8_A Programmed cell death p 22.2 2.3E+02 0.0077 30.1 8.5 85 342-433 26-116 (165)
158 2nsz_A Programmed cell death p 21.8 3.5E+02 0.012 27.3 9.5 86 342-433 23-115 (129)
159 2ion_A PDCD4, programmed cell 21.6 3.3E+02 0.011 28.3 9.5 86 342-433 25-117 (152)
160 1c7c_A Protein (deoxyhemoglobi 21.3 9.4E+02 0.032 27.4 15.6 41 437-477 238-279 (283)
161 1ho8_A Vacuolar ATP synthase s 20.3 2.6E+02 0.0089 34.8 9.6 78 887-966 388-477 (480)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=100.00 E-value=4e-56 Score=514.33 Aligned_cols=257 Identities=28% Similarity=0.572 Sum_probs=247.6
Q ss_pred hhccccCCCChHHhhh----hhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcCccHHHHHHHHHHHHHhcCcchhh
Q 000167 1129 QALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD 1204 (1972)
Q Consensus 1129 ~~~~~~~~~~k~~R~~----~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~~~al~~L~~~l~~~~~~ 1204 (1972)
+|++. .+++|++|++ +++++|+|++||+|++++|++||.++++++++.+|||+||++|++|+++|++.+++++++
T Consensus 2 ~~~l~-~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~ 80 (266)
T 2of3_A 2 ELLLS-DNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRS 80 (266)
T ss_dssp CCSBC-CSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCcee-cCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH
Confidence 34444 4788999984 567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhCCChHHHHHHHHHHHHHHh
Q 000167 1205 IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1284 (1972)
Q Consensus 1205 ~i~~lDlllk~~~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~Gd~k~~vr~~v~~il~~~~ 1284 (1972)
+++++|++|+|+++||+|+|++|++++||+|..+|..|.+.+|+|++||+.+|||+|++|+||+||.||+.++.+++.++
T Consensus 81 ~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~ 160 (266)
T 2of3_A 81 LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS 160 (266)
T ss_dssp HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH---HHHHhhhcCCchHHHHHHHHHHHHHHHH
Q 000167 1285 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKI 1361 (1972)
Q Consensus 1285 ~v~~~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~k~l---~~ia~~i~drd~~VR~aAl~~l~~~y~~ 1361 (1972)
.+||++++|+|+++|++|||+|+|+||+++|+++|++||+. +.|++ +.|+++++|+|++||+||+||++++|.+
T Consensus 161 ~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 161 DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 67888 9999999999999999999999999999
Q ss_pred hCHHHHHHhhcCCHHHHHhHHHHHHhhh
Q 000167 1362 LGEDIWRYVGKLTDAQKSMLDDRFKWKV 1389 (1972)
Q Consensus 1362 ~G~~v~~~vg~ls~~~~s~l~er~kr~~ 1389 (1972)
+||.||+++|+|++++++||+|||||++
T Consensus 238 ~Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 238 EGDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp HTTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999974
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-34 Score=333.05 Aligned_cols=231 Identities=24% Similarity=0.435 Sum_probs=219.7
Q ss_pred CCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHH-Hh-cCCCCC--CCChHHHHHHHHHHh-cccCHHHHHH
Q 000167 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (1972)
Q Consensus 270 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~-l~-~~~ki~--~~~y~~l~~~L~k~l-~D~N~~V~~~ 344 (1972)
.|+||++|||||++||| ++|++.+.++||++|++|++.|.. ++ +++++. .++|.++++.|++.+ +|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~-~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLP-KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCC-hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 47899999999999999 699999999999999999999999 87 678888 689999999999999 6999999999
Q ss_pred HHHHHHHHHHHhh-hchh-hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC------CChHhHHHHHHHHhhcCC
Q 000167 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (1972)
Q Consensus 345 A~~~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~------~~l~~il~~l~~~l~~Kn 416 (1972)
||+|++.||++++ +.|. +|+..++|.+|++++|+|+.|++++..|+++++.+ + .+++.+++.|+.+++|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999997 4 238999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCh--hHHHHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHH
Q 000167 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1972)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~--~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~ 493 (1972)
|++|.+++.||.+++..++. ..+.+++ +.++|.+.++++|++++||++|.+|++++++++|++.+.+|++.||+.++
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998875 5677899 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000167 494 NKLSEMIAG 502 (1972)
Q Consensus 494 kkI~e~~~~ 502 (1972)
+||++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999975
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-34 Score=339.35 Aligned_cols=232 Identities=25% Similarity=0.367 Sum_probs=183.4
Q ss_pred CChHHhhhhhhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCC-----CchhHHhhhhhhHhhhcCCcHHHHHHHHHH
Q 000167 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP-----KDNRIRELGPLFKKTVADSNAPVQDKALDA 75 (1972)
Q Consensus 1 m~~~~~~~~~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~d~-----~~~~~~~~~~~~~k~v~DsN~~vqe~~lea 75 (1972)
|++|++ .||++|||+|||.||+||.|++||++|.+.|+..... ....|..+.+++++++.|+|+.||++|+++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 777442 4999999999999999999999999999999865322 122366778899999999999999999999
Q ss_pred HHHHHHHhchhh------hhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh-hhHHHHHHHHhhcCChhhHHH
Q 000167 76 LIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV-DVFLDVMEKAIKNKVAKAVVP 147 (1972)
Q Consensus 76 l~~~v~~~~~~~------~~~~~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~-~~v~~~L~~~~~~KnpKv~~~ 147 (1972)
+..|++..+... ..++..++|.|++||++ +|+++|+.|.++++.++|...+ +.+++.|..++.|||||++.+
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHH
Confidence 999998865532 23467799999999987 7999999999999999998654 778899999999999999999
Q ss_pred HHHHHHHHHHHhCCCccChhH----HHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCch--hhHHHhhhChHHHHHHHH
Q 000167 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP--VKTILFEKMRDTMKKELE 221 (1972)
Q Consensus 148 ~l~~l~~~l~~fG~~~~~~k~----il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~--l~~~l~~~Lk~~q~keLe 221 (1972)
|+.||.+++.+||.+++++++ +++.++++|+|+|++||++|+.+++++|+|+|+.. +...++++|||+|+++|+
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHH
Confidence 999999999999999998765 67788999999999999999999999999999742 223445899999999999
Q ss_pred HHHHhccCCCCCC
Q 000167 222 VELVNVSGTARPT 234 (1972)
Q Consensus 222 ~~f~k~~~~~~P~ 234 (1972)
++|+++.+.++|.
T Consensus 239 ~~f~k~~~~~~~~ 251 (278)
T 4ffb_C 239 KLFAKVGDEPSSS 251 (278)
T ss_dssp HHHSCCCC-----
T ss_pred HHHHhcCCCCCCC
Confidence 9999998765443
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.97 E-value=1.3e-24 Score=311.84 Aligned_cols=833 Identities=14% Similarity=0.144 Sum_probs=559.6
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCCCCch-hHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHH
Q 000167 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDN-RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (1972)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~-~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~ 93 (1972)
.+.+++.+.+...|.+|.++|.+.++...-..++ ....+...+.+++.|.|..++..|+.++..+++..+. .+...
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 3678899999999999999999988642111122 3445566677888999999999999999999877654 45667
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh------------hhhHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhC
Q 000167 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA------------VDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFG 160 (1972)
Q Consensus 94 v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~------------~~~v~~~L~~~~~-~KnpKv~~~~l~~l~~~l~~fG 160 (1972)
+++.|++......+.+|..|..++-.+++.-. ...++..|..++. +.++.++.+++.+|.+++..+|
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 88888876444678899999888887776522 3466777778887 6899999999999999999999
Q ss_pred CCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhh
Q 000167 161 AKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRA 239 (1972)
Q Consensus 161 ~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs 239 (1972)
....+ ...+++.+.+.|.|.++.||..|...+..+....++.. +..+-+..+..|.. ... ... |.
T Consensus 167 ~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-----~~~~l~~l~~~L~~----~~~--~~~---r~ 232 (1230)
T 1u6g_C 167 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-----FVDLIEHLLSELSK----NDS--MST---TR 232 (1230)
T ss_dssp SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHH----TCS--SCS---CT
T ss_pred hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHHHhcc----CCc--hhH---HH
Confidence 86554 46799999999999999999999999999998887642 12221222222211 111 111 11
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcC-CCC
Q 000167 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI 318 (1972)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki 318 (1972)
..-.-.. .- ....+ ..+.+| +..+- +.+...+.+.++..|..++..+..++.. +.-
T Consensus 233 ~a~~~l~-~l-~~~~~------------~~~~~~--------l~~l~-~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 233 TYIQCIA-AI-SRQAG------------HRIGEY--------LEKII-PLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp THHHHHH-HH-HHHSS------------GGGTTS--------CTTHH-HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHH-HH-HHHhH------------HHHHHH--------HHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 1110000 00 00000 012222 11111 3455666778888999999988887742 211
Q ss_pred CCCChHHHHHHHHHHhc-------------------------------------ccCHHHHHHHHHHHHHHHHHhhhchh
Q 000167 319 APGDFTEVCRTLKKLIT-------------------------------------DVNIAVAVEAIQAIGNLARGLRTHFS 361 (1972)
Q Consensus 319 ~~~~y~~l~~~L~k~l~-------------------------------------D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (1972)
.......+++.+.+.+. |..-.|+..|+.+++.++...+..|.
T Consensus 290 ~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 290 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 01112345555544332 12235788899999999997777799
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC-----------------------ChHhHHHHHHHHhhcCChH
Q 000167 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----------------------NLVDVVEDVKTSVKNKVPL 418 (1972)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~-----------------------~l~~il~~l~~~l~~Knp~ 418 (1972)
+|...++|.++..++|....||.++..++..++..... .++.+++.+...+++.+|.
T Consensus 370 ~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 449 (1230)
T 1u6g_C 370 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 449 (1230)
T ss_dssp HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHH
Confidence 99999999999999999999999999999888864100 1234555555668999999
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHH
Q 000167 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (1972)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI 496 (1972)
+|..++..+..++...+ ..+.++++.++|.+...|.|.++ +||..+..+++.+....|.+.+.++++.+
T Consensus 450 vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~l-------- 520 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL-------- 520 (1230)
T ss_dssp HHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTT--------
T ss_pred HHHHHHHHHHHHHHHch-hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHH--------
Confidence 99999999999888754 33556789999999999999985 89999888888777666654444433222
Q ss_pred HHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (1972)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~ 576 (1972)
T Consensus 521 -------------------------------------------------------------------------------- 520 (1230)
T 1u6g_C 521 -------------------------------------------------------------------------------- 520 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccc--------cchhHHHHHHHHhc
Q 000167 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--------LDQSVEILVRLVCM 648 (1972)
Q Consensus 577 ~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~--------~~~~~~~lv~~L~~ 648 (1972)
-+.++..+.+.+|+.|.+++..+..+++..+. ..++.+.++..+..
T Consensus 521 --------------------------lp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 574 (1230)
T 1u6g_C 521 --------------------------VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 574 (1230)
T ss_dssp --------------------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence 12344556677888888888888888766432 22344444444321
Q ss_pred CCCC--ccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhc---ChhH----HH
Q 000167 649 LPGW--SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV---GPGF----IF 719 (1972)
Q Consensus 649 ~p~~--~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~---~~~~----vl 719 (1972)
.+ .|.+..|.+.++.++..++...+......+..+++.|.+.+.+...|..+..++..++... ..+. ++
T Consensus 575 --~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~ 652 (1230)
T 1u6g_C 575 --RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652 (1230)
T ss_dssp --HHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred --HHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence 23 5778889999999999999876643345678888988888887667777777777766532 2233 34
Q ss_pred HHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHH---HhcCCCCCchhHHHHHHHHHHHHHHhhChhHHh
Q 000167 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC---KDTGLQSSAAATRNATIKLLGALHKFVGPDIKG 796 (1972)
Q Consensus 720 ~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l---~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~ 796 (1972)
..+...+ .+.++.+|..++.++..++..++. .++...+.+.+ ..+ +.+.|..++..+..++..|+...++.+..
T Consensus 653 ~~L~~~l-~~~~~~~r~~a~~al~~l~~~~~~-~~~~~~v~~~l~~ll~l-l~~~D~~~~~~~~~~L~~l~~~~~~~~~~ 729 (1230)
T 1u6g_C 653 PILASFL-RKNQRALKLGTLSALDILIKNYSD-SLTAAMIDAVLDELPPL-ISESDMHVSQMAISFLTTLAKVYPSSLSK 729 (1230)
T ss_dssp HHHHHHT-TSCCHHHHHHHHHHHHHHHHHCCT-TCCHHHHHHHHTTCGGG-SCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcccc-cCCHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHHHHhCchhHHH
Confidence 4444443 567899999999999999998874 34444444444 344 67888999999999999999887766655
Q ss_pred hhhcccHHHHHHHHH-------------HHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcC
Q 000167 797 FLADVKPALLSALDA-------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (1972)
Q Consensus 797 ~L~~lkp~ll~~Le~-------------efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~ 863 (1972)
++..+-|.++..+.. -|..+...++ +. .....+.+.++..+.
T Consensus 730 ~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~------------------------~~-~~~~~ll~~l~~~~~ 784 (1230)
T 1u6g_C 730 ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT------------------------NN-LGYMDLLRMLTGPVY 784 (1230)
T ss_dssp TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC------------------------TT-CSHHHHHHHHSTTTT
T ss_pred hHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC------------------------CC-CCHHHHHHHHhcccc
Confidence 555555555443321 1111110000 00 001111122222211
Q ss_pred ---C--CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc--chHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 864 ---S--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 864 ---d--~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
+ ..|..|..+-..+..++.... +.. ++++..+...+.+ .+..+...++.+++.++.... +.+ ...
T Consensus 785 ~~~~~~~~~~~~~~~a~~i~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~-~~~ 856 (1230)
T 1u6g_C 785 SQSTALTHKQSYYSIAKCVAALTRACP----KEG-PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID--LSG-QLE 856 (1230)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHSC----CCS-HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC--CCS-CTH
T ss_pred CCCCccccchhhHHHHHHHHHHHHhcc----hhh-HHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCC--Ccc-ccc
Confidence 1 367778888788887776421 211 3444444444543 344556677777787755422 222 245
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC---CChhhh
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHL 1013 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~---~~~~~l 1013 (1972)
+.+.++..|.|....||.+|..||+.++. .+++.++|.+...+.+. +..|...+.-|.+++...+.. +....+
T Consensus 857 l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~-~~~~~~lp~ll~~l~~~---~~~~~~~l~al~e~i~~~~~~~~~~~~~~i 932 (1230)
T 1u6g_C 857 LKSVILEAFSSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQ---PKRQYLLLHSLKEIISSASVVGLKPYVENI 932 (1230)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHSSCSTTTHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHhHHHhc-cCHHHHHHHHHHHHhcc---chhhHHHHHHHHHHHhcCChhhHHhhHHHH
Confidence 78999999999999999999999999874 35678899999999754 567888888888888754321 122344
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
...++..+.|.+..+|..+.+|++.+....+
T Consensus 933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~ 963 (1230)
T 1u6g_C 933 WALLLKHCECAEEGTRNVVAECLGKLTLIDP 963 (1230)
T ss_dssp HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG
T ss_pred HHHHHHHhcCcchhhHHHHHHHHhhhhccCh
Confidence 4457778888888999999999999987654
No 5
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=5e-29 Score=291.81 Aligned_cols=230 Identities=29% Similarity=0.470 Sum_probs=217.6
Q ss_pred CCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHH
Q 000167 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (1972)
Q Consensus 271 D~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~ 348 (1972)
||||+++|+||+++++ ++|++.+.+++|++|++|+..|..++.+ +++...+|.++++.|.+++. |.|..|+..|+.|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 7899999999999999 6899999999999999999999998864 78877889999999999995 9999999999999
Q ss_pred HHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHH
Q 000167 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1972)
Q Consensus 349 l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~ 428 (1972)
++.|+.++++.|.+|+..++|.|+++++|+++.||+++..||.+++.. .+++.+++.|..+++++||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 789999999999999999999999999999
Q ss_pred HHHHhcChh-HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcC
Q 000167 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1972)
Q Consensus 429 ~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (1972)
.++..+.+. .+..+++.++|.+.++++|++++||++|.+|++.++.++|++.+.++++.||+.++++|++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999888654 345788999999999999999999999999999999999998899999999999999999999874
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.96 E-value=8.4e-25 Score=313.82 Aligned_cols=911 Identities=15% Similarity=0.137 Sum_probs=563.1
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhc----------------cCCCCch----------------------------hHH
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDS----------------ITDPKDN----------------------------RIR 51 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~----------------~~d~~~~----------------------------~~~ 51 (1972)
+.+.+.+++|+.|..|...|...+.. ..+++.. .+.
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence 77778888999998888777655431 1122210 123
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh---hh
Q 000167 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA---VD 127 (1972)
Q Consensus 52 ~~~~~~~k~v~D-sN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~---~~ 127 (1972)
.+.+.+.+.+.| .|..++..+++++..+++..+.....|...+++.++...-...+.+|..|..++-.+++... .+
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~ 212 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV 212 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CT
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 334445566774 88999999999999999887665556777788887765333678999999999998887632 24
Q ss_pred hHHHHHHHHhhcCC-hhhHHHHHHHHHHHHHHhCCCccC-hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhh
Q 000167 128 VFLDVMEKAIKNKV-AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVK 205 (1972)
Q Consensus 128 ~v~~~L~~~~~~Kn-pKv~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~ 205 (1972)
.+++.|...+.+.+ +.++..++.++..+....|....+ +..+++.+...+.+.+..||+.+..++..+.+.+|++ +.
T Consensus 213 ~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~ 291 (1230)
T 1u6g_C 213 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VY 291 (1230)
T ss_dssp THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CH
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-HH
Confidence 56777777765543 578888899999988887763322 4679999999999999999999999999999999875 55
Q ss_pred HHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 000167 206 TILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPL 285 (1972)
Q Consensus 206 ~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl 285 (1972)
+++ ..+-|..+ ..+.. .|. + ... .. + + .++.. +.+. .+++.+.+
T Consensus 292 ~~l-~~li~~ll-------~~l~~--d~~-~-~~~-~d----~---~-~~~~~--~~~~-~~~~~~~~------------ 335 (1230)
T 1u6g_C 292 PHV-STIINICL-------KYLTY--DPN-Y-NYD-DE----D---E-DENAM--DADG-GDDDDQGS------------ 335 (1230)
T ss_dssp HHH-HHHHHHHT-------TCCCC--C-----------------------------------------------------
T ss_pred HhH-HHHHHHHH-------HHhCC--CCC-C-CCc-cc----c---c-ccccc--cccc-cccchhhc------------
Confidence 544 33322221 11111 010 0 000 00 0 0 00000 0000 00000000
Q ss_pred cccchhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh------
Q 000167 286 EKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT------ 358 (1972)
Q Consensus 286 ~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~------ 358 (1972)
.+.|....+..|+.|..|++.|..++. .+......|..+++.|...+.|.+..|+..++.++..+...++.
T Consensus 336 --~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 413 (1230)
T 1u6g_C 336 --DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLC 413 (1230)
T ss_dssp -----------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----
T ss_pred --ccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccccc
Confidence 012233457889999999999999885 22211223556778888888899999999999999999887643
Q ss_pred -------------chhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC----CChHhHHHHHHHHhhcCCh--HH
Q 000167 359 -------------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVP--LV 419 (1972)
Q Consensus 359 -------------~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~----~~l~~il~~l~~~l~~Knp--~v 419 (1972)
.+.++...++|.++..+++....+|.++..++..++.... ..++.+++.|...++++++ .+
T Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v 493 (1230)
T 1u6g_C 414 DPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNL 493 (1230)
T ss_dssp -------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHH
T ss_pred CccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchH
Confidence 4567888999999999999999999999999999987611 2357889999999998875 99
Q ss_pred HHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc------hhHHHhHhhccHHHH
Q 000167 420 RSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM------RPLERSIEKLDDVRR 493 (1972)
Q Consensus 420 R~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge------~~~~~~l~~Ld~~~~ 493 (1972)
|.+++.++..++..+++..+.++++.++|.+..+++|.+..||..|..+++.+++.+|+ ..+.+|++.+-+.-.
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll 573 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTI 573 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence 99999999999988887767788999999999999999999999999999999999987 235555555433322
Q ss_pred HHH-------------HHHH----hcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCC
Q 000167 494 NKL-------------SEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556 (1972)
Q Consensus 494 kkI-------------~e~~----~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k 556 (1972)
..+ -.++ ...|..- . +. -+...+.- ..... .+..
T Consensus 574 ~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~---~--------------~~--~~~~l~~L-~~~l~--~e~~------- 624 (1230)
T 1u6g_C 574 KRLKAADIDQEVKERAISCMGQIICNLGDNL---G--------------SD--LPNTLQIF-LERLK--NEIT------- 624 (1230)
T ss_dssp HHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC---C--------------TH--HHHHHHHH-HHHTT--SSSH-------
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCchh---h--------------hh--HHHHHHHH-HHHhc--cchh-------
Confidence 111 0111 1100000 0 00 00000000 00000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc
Q 000167 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636 (1972)
Q Consensus 557 ~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~ 636 (1972)
+.+... ....-..+.. +..+ +.. +.. +-+.+...+.+.+|..|..++..|..++...+...
T Consensus 625 ----r~~~~~-al~~i~~~~~--------~~~~--~~~---~~~-i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~ 685 (1230)
T 1u6g_C 625 ----RLTTVK-ALTLIAGSPL--------KIDL--RPV---LGE-GVPILASFLRKNQRALKLGTLSALDILIKNYSDSL 685 (1230)
T ss_dssp ----HHHHHH-HHHHHTTCSS--------CCCC--HHH---HHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC
T ss_pred ----HHHHHH-HHHHHHhCcc--------ccch--HHH---HHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC
Confidence 000000 0000000000 0001 111 111 22467788899999999999999999998854321
Q ss_pred hhHHHHHHHHhc-CCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhc--
Q 000167 637 QSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV-- 713 (1972)
Q Consensus 637 ~~~~~lv~~L~~-~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~-- 713 (1972)
..+.+..++.. .|.+.|.+..+...+++++..++...+.........+++.++..+.+..++..+.+++..+....
T Consensus 686 -~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 764 (1230)
T 1u6g_C 686 -TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764 (1230)
T ss_dssp -CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHh
Confidence 23445555532 25677889999999999999988654432223445666777766666554443433333222211
Q ss_pred --C----hhHHHHHHHHhh---------------------------------------hhCC----ChHHHHHHHHHHHH
Q 000167 714 --G----PGFIFERLYKIM---------------------------------------KDHK----NPKVLSEGILWMVS 744 (1972)
Q Consensus 714 --~----~~~vl~~l~~~l---------------------------------------~~~K----npKv~~e~l~~L~~ 744 (1972)
. ...+++.++..+ ..-+ ++.++.-++..+.+
T Consensus 765 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 844 (1230)
T 1u6g_C 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGE 844 (1230)
T ss_dssp TCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 1 111222222110 0001 22222233333332
Q ss_pred HHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCC
Q 000167 745 AVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824 (1972)
Q Consensus 745 ~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p 824 (1972)
+-...+... ...+++.+.++ +.+++..||.+|..+++.+... .+. .+-|.+++.|+.+ .+.++. .
T Consensus 845 ~g~~~~~~~--~~~l~~~~~~~-l~~~~~~Vr~aAa~aLg~l~~~---~~~----~~lp~ll~~l~~~-~~~~~~----~ 909 (1230)
T 1u6g_C 845 VGHHIDLSG--QLELKSVILEA-FSSPSEEVKSAASYALGSISVG---NLP----EYLPFVLQEITSQ-PKRQYL----L 909 (1230)
T ss_dssp HHHHSCCCS--CTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHH---THH----HHHHHHHHHHHSC-GGGHHH----H
T ss_pred hcccCCCcc--cccHHHHHHHH-hCCCCHHHHHHHHHHhHHHhcc---CHH----HHHHHHHHHHhcc-chhhHH----H
Confidence 211111111 23467777787 9999999999999999998732 122 2234555555421 000000 0
Q ss_pred CCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc
Q 000167 825 KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904 (1972)
Q Consensus 825 ~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L 904 (1972)
...++.- ... .+..+.- .....|.+.|+..+++.+|..|..+.+.+..++... ..++++.|..++
T Consensus 910 l~al~e~--i~~--~~~~~~~---~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~--------~~~l~p~l~~~l 974 (1230)
T 1u6g_C 910 LHSLKEI--ISS--ASVVGLK---PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLKGYL 974 (1230)
T ss_dssp HHHHHHH--HHS--SCSTTTH---HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHHTTTS
T ss_pred HHHHHHH--Hhc--CChhhHH---hhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC--------hHHHHHHHHHHh
Confidence 0000000 000 0000110 112346667777888889999999999999887521 267889999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhc
Q 000167 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD 982 (1972)
Q Consensus 905 ~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~ 982 (1972)
.|.+..++..++.++..+....+..+.+|+..+++.++..++|.+..||++|..+++.++.+.+ +...++.+.+.|.+
T Consensus 975 ~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~ 1054 (1230)
T 1u6g_C 975 ISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYN 1054 (1230)
T ss_dssp SSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHH
Confidence 9999999998998888888888888899999999999999999999999999999999998875 23334444444421
Q ss_pred ----CC----------------CChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 983 ----AK----------------LGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 983 ----~~----------------~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
++ .+-.+|..+...+...+......-++.+++..+...|.|. .|+|--+...+..++..
T Consensus 1055 ~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~ 1133 (1230)
T 1u6g_C 1055 ETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTL 1133 (1230)
T ss_dssp TTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHS
T ss_pred HhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCch-HHHHHHHHHHHHHHHhc
Confidence 10 0125788888777777766544334555666677778773 77888888777777665
Q ss_pred cCh
Q 000167 1043 GGQ 1045 (1972)
Q Consensus 1043 ~G~ 1045 (1972)
-+.
T Consensus 1134 ~~~ 1136 (1230)
T 1u6g_C 1134 CPS 1136 (1230)
T ss_dssp CCH
T ss_pred CHH
Confidence 543
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.95 E-value=2.2e-22 Score=278.12 Aligned_cols=771 Identities=12% Similarity=0.137 Sum_probs=537.6
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hhHHHH
Q 000167 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVC 95 (1972)
Q Consensus 17 ~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~-~~~~v~ 95 (1972)
.+...+.+-..|.+|.+.|.+ +. ..|.|..|...+..-..+.+..+...|.-.|-.++++.-..... ....|-
T Consensus 19 l~~~~s~d~~~r~~Ae~~L~~-~~-----~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik 92 (852)
T 4fdd_A 19 LKESQSPDTTIQRTVQQKLEQ-LN-----QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIK 92 (852)
T ss_dssp HHHHTCSCHHHHHHHHHHHHH-HT-----TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHH-HH-----hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence 344457788899999888874 32 34666555443333346778888888877777666542111111 122344
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh---hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc------cC
Q 000167 96 DAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI------IP 165 (1972)
Q Consensus 96 ~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~---~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~------~~ 165 (1972)
..|++- ++ ..+.+|..+.+++-.++..+.+ ..+++.|...+.+.++.++.+++.+|..+++.++... -.
T Consensus 93 ~~ll~~-l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~ 171 (852)
T 4fdd_A 93 SECLNN-IGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP 171 (852)
T ss_dssp HHHHTT-TTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence 444443 54 5678999998888888766532 3678888889999999999999999999999887631 12
Q ss_pred hhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhh
Q 000167 166 PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL 245 (1972)
Q Consensus 166 ~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~ 245 (1972)
+..+++.+..+|.+.+..||..|...+..+....+. .+...+.
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~~-------------------------------- 214 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-----ALMLHID-------------------------------- 214 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-----HHHTSHH--------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-----HHHHHHH--------------------------------
Confidence 567899999999999999999988776543322110 0000000
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChH
Q 000167 246 GQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFT 324 (1972)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~ 324 (1972)
+++ +.+...+.+.++..|+.+++.|..++. .++.......
T Consensus 215 ----------------------------------~~l-----~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 215 ----------------------------------SFI-----ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp ----------------------------------HHH-----HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred ----------------------------------HHH-----HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 000 123334556778889999999988874 4433333356
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhchhhhhhhHHHHHHHHh-----------cc-----------CcH
Q 000167 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKL-----------KE-----------KKP 380 (1972)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~llp~LL~kl-----------kd-----------kk~ 380 (1972)
.++..+.+.+.|....|+..|+.++..+++. .++.+.+|...++|.++..+ .| ..-
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 7888888999998999999999999998863 44557899999999999998 34 445
Q ss_pred HHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCh
Q 000167 381 TVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1972)
Q Consensus 381 ~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~ 459 (1972)
.||.++..+++.+... +..-+..+++.+...+++.+|.+|..++..|..+.+.++. .+.++++.++|.+..++.|.++
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCH
Confidence 6899999999999876 2222456777777888899999999999999987766543 4557889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccc
Q 000167 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (1972)
Q Consensus 460 ~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~ 539 (1972)
.||.+|..+++.+...++......+
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~~------------------------------------------------------- 439 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDTY------------------------------------------------------- 439 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTTT-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccchHHHH-------------------------------------------------------
Confidence 9999999999877654432100000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHH
Q 000167 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (1972)
Q Consensus 540 s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 619 (1972)
.++ +-+.++..|.+.+|..|.
T Consensus 440 ---------------------------------------------------~~~--------ll~~L~~~L~d~~~~vr~ 460 (852)
T 4fdd_A 440 ---------------------------------------------------LKP--------LMTELLKRILDSNKRVQE 460 (852)
T ss_dssp ---------------------------------------------------HHH--------HHHHHHHHHTCSSHHHHH
T ss_pred ---------------------------------------------------HHH--------HHHHHHHHHhCCCHHHHH
Confidence 000 113456777788999999
Q ss_pred HHHHHHHHHHHhcc-ccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC-C-chhhHHHHHHHHHhh---h
Q 000167 620 EAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-F-PKKCVVLCLLGISER---V 693 (1972)
Q Consensus 620 ~a~e~L~~~v~~~~-~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~-~-~~~~~~~il~~LveK---l 693 (1972)
.|...|..+++..+ ...++.+.++..|.. .+++.+.+....+++++..++...+. + ....+..++|.++++ +
T Consensus 461 ~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~--~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l 538 (852)
T 4fdd_A 461 AACSAFATLEEEACTELVPYLAYILDTLVF--AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML 538 (852)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHhhHhHHHHHHHHHHH--HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 99999998887743 233344444443321 12222333444566777777765432 2 234677788888853 3
Q ss_pred cc--hhhhHHHHHHHHHHHhhcChhHH--HHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHH-HhcCC
Q 000167 694 AD--IKTRAHAMKCLTTFSEAVGPGFI--FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC-KDTGL 768 (1972)
Q Consensus 694 gd--~K~r~~a~~~L~~l~e~~~~~~v--l~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l-~~~gL 768 (1972)
.| ...+ .+.+++..++...+..++ +..+++ .++..+...+... ..... ... +
T Consensus 539 ~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~------------~~~~~l~~~l~~~---------~~~~~~~~~-~ 595 (852)
T 4fdd_A 539 KDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ------------RCVNLVQKTLAQA---------MLNNAQPDQ-Y 595 (852)
T ss_dssp CTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH------------HHHHHHHHHHHHH---------HHHHHCTTT-S
T ss_pred ccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH------------HHHHHHHHHHHHH---------HHhhcCCcc-c
Confidence 33 2343 677788888877765432 222222 2233333222111 00000 112 4
Q ss_pred CCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcc
Q 000167 769 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRE 848 (1972)
Q Consensus 769 ~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprv 848 (1972)
+..+..+|..+..+++.+...+|..+.+|+.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~------------------------------------------------ 627 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVAR------------------------------------------------ 627 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHT------------------------------------------------
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcC------------------------------------------------
Confidence 55677899999999999999999877766511
Q ss_pred cccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh
Q 000167 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1972)
Q Consensus 849 dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~ 928 (1972)
..+.+-++..+.|+++.+|..+...+..++......+.+. +.++++.|...|.+.+..++..|+.+++.++..+|.
T Consensus 628 ---~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 628 ---SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp ---CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred ---CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence 0023445666778889999999999999987665566665 378999999999888888999999999999999999
Q ss_pred hhHhhhhhHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000167 929 AVEKSSKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~D~--k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1972)
++.+|+..+++.++..+.+. ...+++.+..++..++..++ +..+++.+...|.+.. +.+.|..++..+...
T Consensus 704 ~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~-d~~e~~~a~~~l~~l 782 (852)
T 4fdd_A 704 EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTM 782 (852)
T ss_dssp GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHH
Confidence 99999999999999999875 45799999999999998853 4667777788886533 456799999998888
Q ss_pred hccCCCCCChhhhHHH---HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHH
Q 000167 1001 LTGLSGFPDAAHLLKP---ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065 (1972)
Q Consensus 1001 l~~~~~~~~~~~ll~p---l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~ 1065 (1972)
+...+.. +...+.. .+....+..++.+..-...+..+-..+|.+....++..|+|..+..+..
T Consensus 783 i~~~p~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 783 ISVNPSG--VIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HHHCGGG--TGGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHhChHh--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHH
Confidence 7766542 2222222 3445688899999999999999999999988999999999998877664
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.3e-25 Score=259.73 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=208.9
Q ss_pred CCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHH-HHHHccccCC--CCChhhHHHHHHhcc-ccchHHHHHHHH
Q 000167 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (1972)
Q Consensus 841 ~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~-ll~~a~~~I~--~~~~~eL~~~L~~~L-~DsN~~V~~~Al 916 (1972)
..|.++++||.++||++|.+.+.+++|++|++|++.|.. ++++ ++++. ...|++++..|++.+ +|+|..|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999 8875 36776 456899999999999 899999999999
Q ss_pred HHHHHHHHHcC-hhhH-hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc------C-chhhHHHHHHHHhcCCCCh
Q 000167 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (1972)
Q Consensus 917 ~~l~~La~alg-~~~~-~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~------~-l~~ll~~l~~~L~~~~~~~ 987 (1972)
++++.|+..++ +.|. +|...++|.++.+++|+++.|++++..|+++|+.++ + ++.+++.|...|+++ +|
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 889999999999987 79
Q ss_pred hHHHHHHHHHHHHhccCCCC-----CCh-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000167 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (1972)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~-----~~~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~ 1061 (1972)
++|.+++.||.+++...+.. +.+ ..+++.+..+++|.+++||.+|.+||..++.++|++.|.+++..|++.+++
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887642 234 455666999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 000167 1062 LILERIKLN 1070 (1972)
Q Consensus 1062 ~I~~~l~k~ 1070 (1972)
+|+++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999863
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.93 E-value=2.8e-21 Score=266.90 Aligned_cols=755 Identities=13% Similarity=0.093 Sum_probs=511.1
Q ss_pred hhhh-cCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc---------
Q 000167 17 EDRL-LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD--------- 84 (1972)
Q Consensus 17 ~erl-~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~v~~~~--------- 84 (1972)
.+.+ .+.+-..|.+|-+.|.+. ... +.|.| ...+...+.+ .+..+...|...|-.+++..-
T Consensus 10 L~~~~~s~d~~~r~~Ae~~L~~~-~~~---~~~~~---~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 10 LENSILSPDQNIRLTSETQLKKL-SND---NFLQF---AGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHH-HHH---CHHHH---HHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHcccCcCHHHHHHHHHHHHHH-Hhh---CHHHH---HHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHH
Confidence 3445 677888999999999774 321 12344 2234444444 367788877777766653210
Q ss_pred --hh-hh-hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC-ChhhHHHHHHHHHHH
Q 000167 85 --AD-AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQA 155 (1972)
Q Consensus 85 --~~-~~-~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K-npKv~~~~l~~l~~~ 155 (1972)
.. .. .....+-..|++-+....+.+|..+..++-.++..+-+ ..+++.|...+.+. ++.++..++.++..+
T Consensus 83 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred hHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 00 11 11234455566653335688888888887777665433 36778888888777 999999999999999
Q ss_pred HHHhCCCc--c--ChhHHHHhhhhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccC
Q 000167 156 LSEFGAKI--I--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG 229 (1972)
Q Consensus 156 l~~fG~~~--~--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~ 229 (1972)
...++... + ....+++.+...+.+. +..||..|..++..+..|++.. + .. ......
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-----~-~~--~~~~~~---------- 224 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-----M-ER--EGERNY---------- 224 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-----H-TS--HHHHHH----------
T ss_pred HHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-----c-cC--hhHHHH----------
Confidence 99888642 1 2456888888889998 8999999998887776555421 1 00 000000
Q ss_pred CCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHH
Q 000167 230 TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL 309 (1972)
Q Consensus 230 ~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L 309 (1972)
++ ..+...+.+.+|+.|..+++.|
T Consensus 225 ---------------------------------------------------ll-----~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 225 ---------------------------------------------------LM-----QVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp ---------------------------------------------------HH-----HHHHHHHTCSCHHHHHHHHHHH
T ss_pred ---------------------------------------------------HH-----HHHHHHhcCCCHHHHHHHHHHH
Confidence 00 0122234567899999999999
Q ss_pred HHHhc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh-----------------chhhhhhhHHHH
Q 000167 310 TKLAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-----------------HFSGSSRFLLPV 370 (1972)
Q Consensus 310 ~~l~~-~~ki~~~~y~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~-----------------~f~~~~~~llp~ 370 (1972)
..++. .+......+. .++..+...+.|.+..|+..|+.++..++..... .+.++...++|.
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 328 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHH
Confidence 88874 3332222234 6777777888899999999999999999886421 234677899999
Q ss_pred HHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000167 371 LLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1972)
Q Consensus 371 LL~klkd-------kk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (1972)
++..+.+ ....+|.++..++..+... +...+..+++.+...+++.+|.+|..++..+..+...+.+..+.++
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~ 408 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY 408 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999974 3458999999999998875 2223566778888888899999999999999988766654556778
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhH-HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCC
Q 000167 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (1972)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~-~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (1972)
++.++|.+...+.|.++.||.++..+++.+...++.... .++
T Consensus 409 l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~------------------------------------- 451 (861)
T 2bpt_A 409 VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH------------------------------------- 451 (861)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-------------------------------------
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-------------------------------------
Confidence 899999999999999999999999988888776653100 000
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhcc
Q 000167 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (1972)
Q Consensus 522 s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l 601 (1972)
.+++
T Consensus 452 ---------------------------------------------------------------------~~~~------- 455 (861)
T 2bpt_A 452 ---------------------------------------------------------------------LPGV------- 455 (861)
T ss_dssp ---------------------------------------------------------------------HHHH-------
T ss_pred ---------------------------------------------------------------------HHHH-------
Confidence 0001
Q ss_pred CcHHHHHhhhcCChHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHhcCCCC--ccchHHHHHHHHHHHHHHHHHc
Q 000167 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVEILVRLVCMLPGW--SEKNVQVQQQVIEVINYLAATA 674 (1972)
Q Consensus 602 l~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-----~~~~~~~~lv~~L~~~p~~--~DsN~qV~~~~Le~l~~l~~~~ 674 (1972)
-+.++..|.+. ++.|..+...|..+++..+ ...++.+.++..|.. .+ .|.+..|...+++++..++...
T Consensus 456 -l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~--~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 456 -VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIG--AANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp -HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHH--HHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH--HHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 12344555554 7888888888888777643 122344434433321 12 2555678888999999999876
Q ss_pred CCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCC
Q 000167 675 TKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL 754 (1972)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l 754 (1972)
+.-....+..++|.+++.+.+...-+ ....+. -.....+.++..++.+|..++..+|....
T Consensus 532 ~~~~~~~~~~l~~~l~~~l~~~~~~~---------~~i~~~----------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 532 TDTVAETSASISTFVMDKLGQTMSVD---------ENQLTL----------EDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSC---------GGGCCH----------HHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhh---------cccCCh----------hhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 54333455566666665554310000 000000 00012345677788888888887776322
Q ss_pred C-hhhHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 000167 755 K-LKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1972)
Q Consensus 755 ~-~k~li~~l~~~gL~~sn~-~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~ 832 (1972)
+ ...+++.+... +.+.+. .||..+..+++.+....|..+..|+..+-|.+++.+
T Consensus 593 ~~~~~l~~~l~~~-l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l----------------------- 648 (861)
T 2bpt_A 593 PVADMLMGLFFRL-LEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL----------------------- 648 (861)
T ss_dssp GGHHHHHHHHHHH-HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHH-HccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----------------------
Confidence 2 34566666666 777767 899999999999999999888877765555444433
Q ss_pred ccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccch--HH
Q 000167 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KN 910 (1972)
Q Consensus 833 ~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN--~~ 910 (1972)
.+.+|.+|..++..+..++......+.+. ..+++..|...+.|.+ ..
T Consensus 649 ------------------------------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~ 697 (861)
T 2bpt_A 649 ------------------------------NQVDSPVSITAVGFIADISNSLEEDFRRY-SDAMMNVLAQMISNPNARRE 697 (861)
T ss_dssp ------------------------------HCTTSHHHHHHHHHHHHHHHHTGGGGHHH-HHHHHHHHHHHHHCTTCCTT
T ss_pred ------------------------------ccccHHHHHHHHHHHHHHHHHhchhccch-HHHHHHHHHHHhCCccccHh
Confidence 33456678888888888887543333332 3678888888887765 78
Q ss_pred HHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC-----chhhHH
Q 000167 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH-----LDKMVP 974 (1972)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-----------~~Vr~Aa~~aL~~i~~~~~-----l~~ll~ 974 (1972)
++..++.+++.++..+|..|.+|+..++|.++..+..+. ..+|.++..++..++..++ +..+++
T Consensus 698 vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~ 777 (861)
T 2bpt_A 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVG 777 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999999999999999999999999987432 4689999999999998877 444455
Q ss_pred HHHHHH----hcCC--CChhHHHHHHHHHHHHhccC-CCC--CChh-hhHHHHHhhcC---CCCHHHHHHHHHHHHHHHH
Q 000167 975 YVTTAL----TDAK--LGAEGRKDLFDWLSKQLTGL-SGF--PDAA-HLLKPASIAMT---DKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 975 ~l~~~L----~~~~--~~~~~R~~~l~~L~~~l~~~-~~~--~~~~-~ll~pl~~~L~---D~~~dVR~aA~~~l~~l~~ 1041 (1972)
.+...| .+.. ++..+|..++.++......+ +.. +.+. .++..+++++. +.+..|+..|.-++..+.+
T Consensus 778 ~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 778 TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 444443 3310 14679999999988877766 332 2334 45666777764 6778899999988887765
Q ss_pred Hc
Q 000167 1042 AG 1043 (1972)
Q Consensus 1042 ~~ 1043 (1972)
.+
T Consensus 858 ~~ 859 (861)
T 2bpt_A 858 QL 859 (861)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.93 E-value=3.4e-21 Score=266.16 Aligned_cols=707 Identities=10% Similarity=0.082 Sum_probs=494.6
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhhhh--hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccCh--h-HHHHh
Q 000167 98 IAAKCLTGRPKTVEKAQAVFMLWVELEAVD--VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--K-RILKM 172 (1972)
Q Consensus 98 LveK~l~~k~~~k~~a~~~ll~~~E~~~~~--~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~--k-~il~~ 172 (1972)
+++..++....+|..|.+-+..+-. .++ ..+-.++..+.+.++.++..|...|.+.+..+-. .++. + .+...
T Consensus 18 ~l~~~~s~d~~~r~~Ae~~L~~~~~--~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~~~~~~ik~~ 94 (852)
T 4fdd_A 18 LLKESQSPDTTIQRTVQQKLEQLNQ--YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-NFPNGVTDFIKSE 94 (852)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-GCCHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHh--CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHH
Confidence 3444466678889999887765532 233 2233334444678889999999999888764322 2332 2 35667
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhcccc
Q 000167 173 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISE 252 (1972)
Q Consensus 173 l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~ 252 (1972)
+...+.+.++.||..+..++.+|.++.+.+.. .
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p------------------------------------------ 127 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNW-----P------------------------------------------ 127 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----T------------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----H------------------------------------------
Confidence 77788899999999888887777765432100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhc-CCCC-----CCCChHHH
Q 000167 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRI-----APGDFTEV 326 (1972)
Q Consensus 253 ~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki-----~~~~y~~l 326 (1972)
++ - +.+.+.+.+.+|..|..++..|..++. .+.. .......+
T Consensus 128 ---------------------------~l----l-~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 128 ---------------------------DL----L-PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp ---------------------------TH----H-HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred ---------------------------HH----H-HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 00 0 234445566678888899988888763 2221 12235778
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChH
Q 000167 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLV 402 (1972)
Q Consensus 327 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~----~~~l~ 402 (1972)
++.|.+.++|.+..|+..|+.++..+.......+..+...+++.++..+.|....||..+..+|..++... ...+.
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88888889999999999999999988876666677788899999999999999999999999999998751 12356
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-----------cC-----------CCh
Q 000167 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-----------ND-----------GTP 459 (1972)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-----------~D-----------s~~ 459 (1972)
.+++.+...+++..+.+|..++.|+..+.+... +..+.+++..++|.+...+ .| .+.
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 788888888999999999999999988655321 2234466788899999888 34 344
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccc
Q 000167 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 539 (1972)
Q Consensus 460 ~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~ 539 (1972)
.||.+|..+++.+....|+..+..+
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l------------------------------------------------------- 360 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHI------------------------------------------------------- 360 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHH-------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHH-------------------------------------------------------
Confidence 5677777777777766664322111
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHH
Q 000167 540 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 619 (1972)
Q Consensus 540 s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 619 (1972)
-+-+...+.|.+|+.|.
T Consensus 361 ---------------------------------------------------------------~~~l~~~l~~~~~~~R~ 377 (852)
T 4fdd_A 361 ---------------------------------------------------------------LPLLKELLFHHEWVVKE 377 (852)
T ss_dssp ---------------------------------------------------------------HHHHHHHHTCSSHHHHH
T ss_pred ---------------------------------------------------------------HHHHHHHhcCCCHHHHH
Confidence 12233456677999999
Q ss_pred HHHHHHHHHHHhccc-cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC-CCchhhHHHHHHHHHhhhcc--
Q 000167 620 EAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVAD-- 695 (1972)
Q Consensus 620 ~a~e~L~~~v~~~~~-~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~LveKlgd-- 695 (1972)
+|+..|+.+.++... .....+.++..+. +.++|.+..|...++.++..++...+ ......+..+++.++..+.|
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~--~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLI--QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHH--HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 999999988766332 1223444555543 25789999999999999998887543 22345677889999988876
Q ss_pred hhhhHHHHHHHHHHHhhcChh------HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHH--
Q 000167 696 IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK-- 764 (1972)
Q Consensus 696 ~K~r~~a~~~L~~l~e~~~~~------~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~---~k~li~~l~-- 764 (1972)
.++|..|..+|..+++..+.. .+++.++..+ +....+...-++..+..++...|..... +..+++.+.
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 468999999999999876543 2344444443 3334444444555555555544532111 233444332
Q ss_pred -hcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCC
Q 000167 765 -DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843 (1972)
Q Consensus 765 -~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d 843 (1972)
.. +.+.++.+| .+.++++.+...+|..+.+|+..+-+.+++.+...+.+..... .. .+
T Consensus 535 ~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~---------~~----------~~ 593 (852)
T 4fdd_A 535 WNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN---------AQ----------PD 593 (852)
T ss_dssp HHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH---------HC----------TT
T ss_pred HHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cC----------Cc
Confidence 33 677788887 7899999999999999999998887877777776543210000 00 00
Q ss_pred CCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC-hhhHHHHHHhccccchHHHHHHHHHHHHHH
Q 000167 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (1972)
Q Consensus 844 ~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~-~~eL~~~L~~~L~DsN~~V~~~Al~~l~~L 922 (1972)
.....+-..|..+++.+..++......+.+.. -..++..+...+.|.+..|+..|+.+++.+
T Consensus 594 -----------------~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 594 -----------------QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp -----------------TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----------------ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 00111223577788888888875434443320 046888899999999999999999999999
Q ss_pred HHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHH
Q 000167 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (1972)
Q Consensus 923 a~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~ 996 (1972)
+..++..|.+|+..++|.+++.+.+....+|..|..+++.++.++| +..+++.+...|.++..+..++..++..
T Consensus 657 ~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ 736 (852)
T 4fdd_A 657 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 736 (852)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 9999999999999999999999998889999999999999998885 3556777777777654445677777777
Q ss_pred HHHHhccCCC--CCChhhhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHcCh
Q 000167 997 LSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 997 L~~~l~~~~~--~~~~~~ll~pl~~~L~D-~~~dVR~aA~~~l~~l~~~~G~ 1045 (1972)
+.+.....+. .+++..++.+++..|.+ .+.+.|..|..+|-.++..-+.
T Consensus 737 igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 737 IGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 7766555433 24567777788888865 5566799999999999888655
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.92 E-value=1e-22 Score=268.54 Aligned_cols=552 Identities=18% Similarity=0.185 Sum_probs=375.8
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
.+...+.+.+|+.|..|+..|..++.. +.+ ....++++.|...+ |.+..|+..++.+++.++..++.. .|...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 577789999999999999999887631 111 12356778887766 777788899999998877665542 577889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~----~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
+|.+...+.+....||+++..+|..+... .+.. .+++.+....++.++.+|..++.++..+....+.. ..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~ 162 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VK 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HH
Confidence 99998888899999999999999999875 3333 34566656667889999999999999877766543 24
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCC
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (1972)
+.++|.+..++.|.++.||.+|.++++.+...+|.+.. .+.+-+ .+.+.+... .
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~l~~----~l~~~~~d~---------~---------- 216 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV---KSEIIP----MFSNLASDE---------Q---------- 216 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHH----HHHHHHTCS---------C----------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH---HHHHHH----HHHHHhcCC---------c----------
Confidence 78899999999999999999999999999998885321 111111 111111100 0
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000167 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1972)
Q Consensus 524 s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (1972)
..++..+....+. .. ..++.++. ...+-
T Consensus 217 --------~~vr~~a~~~l~~--------------------------------l~--------~~~~~~~~----~~~~~ 244 (588)
T 1b3u_A 217 --------DSVRLLAVEACVN--------------------------------IA--------QLLPQEDL----EALVM 244 (588)
T ss_dssp --------HHHHTTHHHHHHH--------------------------------HH--------HHSCHHHH----HHHTH
T ss_pred --------HHHHHHHHHHHHH--------------------------------HH--------HhCCHHHH----HHHHH
Confidence 0011000000000 00 00001111 11222
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (1972)
+-+...+.+.+|+.|..+++.|..+....++. ....
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--------------------------------------------~~~~ 280 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--------------------------------------------ITKT 280 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--------------------------------------------HHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--------------------------------------------cchh
Confidence 34445555566666666666555544432210 0112
Q ss_pred HHHHHHHhhhcch--hhhHHHHHHHHHHHhhcChh--------HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCC
Q 000167 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1972)
Q Consensus 684 ~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~--------~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~ 753 (1972)
.+++.++.-+.|. .+|..+..+|..+++..+.+ .+++.+... .++.+|+||..++.+|..+...+|...
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~ 359 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHhH
Confidence 2333344333332 35555556666666555433 223333333 367899999999999988888777531
Q ss_pred CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Q 000167 754 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 833 (1972)
Q Consensus 754 l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~ 833 (1972)
....+++.+..+ +.+.++.||.+|...++.+...+|... +.
T Consensus 360 -~~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~----------------------------------- 400 (588)
T 1b3u_A 360 -TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--LS----------------------------------- 400 (588)
T ss_dssp -HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--HH-----------------------------------
T ss_pred -HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--HH-----------------------------------
Confidence 134566777776 889999999999999988887766421 00
Q ss_pred cCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHH
Q 000167 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (1972)
Q Consensus 834 ~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~ 913 (1972)
..+.+.+...+.|.+|++|..+++.+..+......... ...+++.+...+.|.+..|+.
T Consensus 401 ------------------~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 401 ------------------QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp ------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHH
T ss_pred ------------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhcCCcHHHHH
Confidence 01223455556788999999999999998864322211 157889999999999999999
Q ss_pred HHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhH
Q 000167 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEG 989 (1972)
Q Consensus 914 ~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~~~~~~~ 989 (1972)
.|+.+++.++..+|..+ +...++|.+...+.|.+..+|.++..++..++..+|. ..++|.+...+.+. ++.+
T Consensus 460 ~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~V 535 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANV 535 (588)
T ss_dssp HHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--CchH
Confidence 99999999999999864 4678899999888999999999999999999998874 45777777777766 6899
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHH
Q 000167 990 RKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 990 R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
|..++..+.......+.. ...+.+.| +...++|.+.+||.+|..++..+
T Consensus 536 r~~a~~~l~~l~~~~~~~-~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDNS-TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999999998877655431 12245555 55667999999999999998765
No 12
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.92 E-value=3.2e-20 Score=256.35 Aligned_cols=702 Identities=13% Similarity=0.136 Sum_probs=472.6
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchh---hhhhhHH
Q 000167 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKE 93 (1972)
Q Consensus 18 erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds-N~~vqe~~leal~~~v~~~~~~---~~~~~~~ 93 (1972)
+.|.+.+-+.|..+.+-+...+...... ..|..+.+.+...+.+. |+.+.+.++.++..+++..+.. ...+...
T Consensus 102 ~~l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 179 (861)
T 2bpt_A 102 TALVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN 179 (861)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHH
T ss_pred HHHCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Confidence 3466777788888888777766542110 13555666677778888 9999999999999999876543 2445667
Q ss_pred HHHHHHHhhcC-C--ChhHHHHHHHHHHHHHhhh--h------hhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC
Q 000167 94 VCDAIAAKCLT-G--RPKTVEKAQAVFMLWVELE--A------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK 162 (1972)
Q Consensus 94 v~~~LveK~l~-~--k~~~k~~a~~~ll~~~E~~--~------~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~ 162 (1972)
+++.++.- +. . .+.+|..|..++..+++.- . ...+++.|...+.+.+++++..++.+|..++..++..
T Consensus 180 ll~~l~~~-l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 180 ILIAIVQG-AQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHH-HSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777654 44 4 6889999999988765431 1 1346777777788899999999999999999998864
Q ss_pred ccC-hh-HHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCc---ch
Q 000167 163 IIP-PK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR---KI 237 (1972)
Q Consensus 163 ~~~-~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R---~~ 237 (1972)
..+ +. .+++.+...+.+.+..||..|..++..+...... + . ... . +. + ..|.+ +.
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~-~-~~~-----------~--~~--~-~~~~~~~~~~ 318 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID--I-A-YEL-----------A--QF--P-QSPLQSYNFA 318 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--H-H-HHH-----------H--HC--T-TCSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--h-h-hhh-----------h--hc--c-CCchhhHHHH
Confidence 322 34 6777778889999999999999988777765421 0 0 000 0 00 0 01111 11
Q ss_pred hhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCC
Q 000167 238 RAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR 317 (1972)
Q Consensus 238 rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k 317 (1972)
+..-. ..-... -...... ++ | ..+.+|..|+.+...|..++..-
T Consensus 319 ~~~~~-~il~~l-l~~l~~~---------~~--d----------------------~~d~~~~~r~~a~~~L~~l~~~~- 362 (861)
T 2bpt_A 319 LSSIK-DVVPNL-LNLLTRQ---------NE--D----------------------PEDDDWNVSMSAGACLQLFAQNC- 362 (861)
T ss_dssp HHHHH-HHHHHH-HHHTTCC---------CC--C-----------------------CCCCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHH-HHHHHH-HHHHHhc---------cc--c----------------------cccccCcHHHHHHHHHHHHHHHc-
Confidence 00000 000000 0000000 00 0 01245899999999998877421
Q ss_pred CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000167 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 318 i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~-~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (1972)
....+..+++.+...+.|.+..++..|+.+++.++.+.+ ..+.+|...++|.++..++|.++.||.++..++..+...
T Consensus 363 -~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 363 -GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 122356788888899999999999999999999998876 678899999999999999999999999999998888765
Q ss_pred -c-----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC---hhHHHHhhhhHHHHHHHHhc--CCChHHHHHH
Q 000167 397 -G-----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAA 465 (1972)
Q Consensus 397 -~-----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~---~~~l~~~l~~l~p~l~k~l~--Ds~~~VR~aA 465 (1972)
+ ...+..+++.+..++++. +.+|..++..+..+.+.+. +..+.++++.+++.+.+++. |.++.||.++
T Consensus 442 ~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 442 VAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp HGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHH
Confidence 1 134778999999999876 9999999999998887754 34566788999999999998 5558999999
Q ss_pred HHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCC
Q 000167 466 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK 545 (1972)
Q Consensus 466 ~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~ 545 (1972)
.++++.+....|+. +.+++..+-+.-.+.+...+.-. .
T Consensus 521 ~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~---------------------------------------~-- 558 (861)
T 2bpt_A 521 FSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVD---------------------------------------E-- 558 (861)
T ss_dssp HHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSC---------------------------------------G--
T ss_pred HHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhh---------------------------------------c--
Confidence 99999999999975 56677665444333333321000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHH
Q 000167 546 RPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSL 625 (1972)
Q Consensus 546 ~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L 625 (1972)
...+.++-+ .....|..+++.|
T Consensus 559 -----------------------------------------~i~~~~~~~-----------------~~~~~~~~~~~~l 580 (861)
T 2bpt_A 559 -----------------------------------------NQLTLEDAQ-----------------SLQELQSNILTVL 580 (861)
T ss_dssp -----------------------------------------GGCCHHHHH-----------------HHHHHHHHHHHHH
T ss_pred -----------------------------------------ccCChhhHH-----------------HHHHHHHHHHHHH
Confidence 000100000 0111233444444
Q ss_pred HHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--h-hhhHHH
Q 000167 626 RQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--I-KTRAHA 702 (1972)
Q Consensus 626 ~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~-K~r~~a 702 (1972)
..++...+. -....+..+++.++.-+.+ . .++..+
T Consensus 581 ~~l~~~~~~------------------------------------------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~ 618 (861)
T 2bpt_A 581 AAVIRKSPS------------------------------------------SVEPVADMLMGLFFRLLEKKDSAFIEDDV 618 (861)
T ss_dssp HHHHHHCGG------------------------------------------GTGGGHHHHHHHHHHHHHSTTGGGTHHHH
T ss_pred HHHHHHhhh------------------------------------------hhHHHHHHHHHHHHHHHccCCCCcHHHHH
Confidence 444433221 0011222333333333322 2 456667
Q ss_pred HHHHHHHHhhcChhH------HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCc--h
Q 000167 703 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSA--A 773 (1972)
Q Consensus 703 ~~~L~~l~e~~~~~~------vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~sn--~ 773 (1972)
..++..+++..+.++ +++.++..+ .++++.++..++..+..++..+|....+ +..+++.+... +.+.+ +
T Consensus 619 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~ 696 (861)
T 2bpt_A 619 FYAISALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARR 696 (861)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccH
Confidence 777777776655432 344444554 6789999999999999999888742111 34566666665 77665 8
Q ss_pred hHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCccccccc
Q 000167 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 853 (1972)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~ 853 (1972)
.||..+..+++.+...+|+.+.+|+..+-|.+++.++. ..+ + .
T Consensus 697 ~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~----~~~--~--------------------~----------- 739 (861)
T 2bpt_A 697 ELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT----KPE--N--------------------G----------- 739 (861)
T ss_dssp THHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC----CCS--S--------------------S-----------
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc----CCC--C--------------------C-----------
Confidence 99999999999999999999999998887777665521 000 0 0
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHcc---ccCCCCChhhHHHHHHhccccc----hHHHHHHHHHHHHHHHHHc
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM 926 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~---~~I~~~~~~eL~~~L~~~L~Ds----N~~V~~~Al~~l~~La~al 926 (1972)
.++.. +..+.+|..+++.+..++...+ ..+.+. ..+++..|...+.|. +..++..|+.+++.|+..+
T Consensus 740 -d~d~~----~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 740 -TLEAL----DYQIKVLEAVLDAYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp -SHHHH----HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred -ChHHH----HHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 00100 1135789999999999997532 123332 367788888888775 7889999999999999999
Q ss_pred -ChhhHhhhh-hHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhc
Q 000167 927 -GPAVEKSSK-GVLSDILKCLG---DNKKHMRECTLTVLDAWLAAV 967 (1972)
Q Consensus 927 -g~~~~~~~~-~llp~ll~~L~---D~k~~Vr~Aa~~aL~~i~~~~ 967 (1972)
|..|.+|.. .++|.+++.+. +....+++.|.=++..+...+
T Consensus 814 ~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 814 PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp TTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999 89999999887 455678888877777765543
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.91 E-value=1.4e-19 Score=250.58 Aligned_cols=721 Identities=12% Similarity=0.077 Sum_probs=479.9
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHH----------------h
Q 000167 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWV----------------E 122 (1972)
Q Consensus 61 v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~--~k~~~k~~a~~~ll~~~----------------E 122 (1972)
+.+.+..++..|.+.|..|-+.. ...++..|++-..+ ..+.+|..|..++-.++ +
T Consensus 10 ~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 10 TVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 34566677777777776654321 12233333333222 25677777755544332 1
Q ss_pred hh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCC--ChhHHHHHHHHHHHHHHh
Q 000167 123 LE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRW 198 (1972)
Q Consensus 123 ~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~ 198 (1972)
+. .-..+-+.|+.++.+.++++ ..+..++..+....+.. -....+++.+..++.+. +..||..+..++..+..+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcc-cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 12345566788888888899 88999998888766541 13457899999999999 999999999999888877
Q ss_pred hCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000167 199 IGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 278 (1972)
Q Consensus 199 lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~ 278 (1972)
++++.+ ...-+..+.
T Consensus 161 ~~~~~~-----~~~~~~ll~------------------------------------------------------------ 175 (876)
T 1qgr_A 161 IDPEQL-----QDKSNEILT------------------------------------------------------------ 175 (876)
T ss_dssp SCHHHH-----GGGHHHHHH------------------------------------------------------------
T ss_pred cCHhhH-----HhHHHHHHH------------------------------------------------------------
Confidence 653211 110000000
Q ss_pred ccccccCcccchhhhhccC--ChHHHHHHHHHHHHHhcC--CCCCCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q 000167 279 VDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLAST--KRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353 (1972)
Q Consensus 279 vdIl~kl~~~~f~~~l~s~--kWkeR~eaL~~L~~l~~~--~ki~~~~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La 353 (1972)
.+...+.+. +|..|..|++.+..++.. ..+....+ ..+++.+...+.|.+..++..++.|+..++
T Consensus 176 ----------~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 176 ----------AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp ----------HHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ----------HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 111222222 567788888888776531 00111011 136777777778888899999999999999
Q ss_pred HHhhhchhhhhh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------------------CCC-----hHhHHHH
Q 000167 354 RGLRTHFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------------------CLN-----LVDVVED 407 (1972)
Q Consensus 354 ~~L~~~f~~~~~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--------------------~~~-----l~~il~~ 407 (1972)
....+.|.+|.. .+++.++..+++....|+..+.+++..+.... +.. +..+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 999888999999 99999999999999999998888887776530 011 2345555
Q ss_pred HHHHhh-------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchh
Q 000167 408 VKTSVK-------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1972)
Q Consensus 408 l~~~l~-------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~ 480 (1972)
++..+. +.+|.+|..++..|..+....+.. .++.++|.+...+.|.++.||.+|..+++.+....+.+.
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD----IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh----hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 555553 346777777777777666554422 246677777777777778888887777765543322111
Q ss_pred HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCC
Q 000167 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 560 (1972)
Q Consensus 481 ~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~ 560 (1972)
+.++++
T Consensus 402 ~~~~~~-------------------------------------------------------------------------- 407 (876)
T 1qgr_A 402 LKPLVI-------------------------------------------------------------------------- 407 (876)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccc---cch
Q 000167 561 KPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQ 637 (1972)
Q Consensus 561 k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~---~~~ 637 (1972)
. +-+.++..|.+.+|..|..|+..|..+...... ...
T Consensus 408 ---------------------------------------~-~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 408 ---------------------------------------Q-AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp ---------------------------------------H-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred ---------------------------------------H-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 1 113456677888899999999999988877432 123
Q ss_pred hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcC--------------CCchhhHHHHHHHHHhhhcch-----hh
Q 000167 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KT 698 (1972)
Q Consensus 638 ~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~--------------~~~~~~~~~il~~LveKlgd~-----K~ 698 (1972)
..+.++..+.. .+.|. ..|...++.++..++..++ .....++..+++.|+..+.+. .+
T Consensus 448 ~l~~~l~~l~~--~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 448 YLAPLLQCLIE--GLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp THHHHHHHHHH--HTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHH--HHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 34444443322 35564 7788889999998887643 122356788999998877653 56
Q ss_pred hHHHHHHHHHHHhhcChh------HHHHHHHHhhhh----------CCC----hHHHHHHHHHHHHHHHHhC-CCCC-Ch
Q 000167 699 RAHAMKCLTTFSEAVGPG------FIFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KL 756 (1972)
Q Consensus 699 r~~a~~~L~~l~e~~~~~------~vl~~l~~~l~~----------~Kn----pKv~~e~l~~L~~~i~~fG-~~~l-~~ 756 (1972)
|..+.++|..++...+.+ .+++.++..+.. ..+ +.++..++.++..++..+| .... -+
T Consensus 525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 604 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS 604 (876)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence 888999999999877643 223333333211 111 5667788888888887766 2111 23
Q ss_pred hhHHHHHHhcCCCCCc--hhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccccccc
Q 000167 757 KDLIDFCKDTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 834 (1972)
Q Consensus 757 k~li~~l~~~gL~~sn--~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~ 834 (1972)
..+++.+... +.+.+ +.||..+..+++.+....|..+.+|+..+-|.+..
T Consensus 605 ~~l~~~l~~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~--------------------------- 656 (876)
T 1qgr_A 605 DVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI--------------------------- 656 (876)
T ss_dssp HHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------------
Confidence 5677777776 77765 48999999999999988888777766544333333
Q ss_pred CCCCCCCCCCCCcccccccccHHHHHhcCCC-CHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc--chHHH
Q 000167 835 SSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNL 911 (1972)
Q Consensus 835 ~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~-~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D--sN~~V 911 (1972)
.+.+. +|.+|..++..+..++......+.+. ..+++..|...+.+ .+..+
T Consensus 657 --------------------------~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 657 --------------------------GLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF-CDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp --------------------------HHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHTCTTSCGGG
T ss_pred --------------------------HHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhCCccccHHh
Confidence 23333 67889999999999987544444443 37888888888865 46679
Q ss_pred HHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC------------
Q 000167 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------ 968 (1972)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k-----------~~Vr~Aa~~aL~~i~~~~~------------ 968 (1972)
+..++.+++.++..+|..|.+|+..++|.++..+.++. ..+|..+..++..++..++
T Consensus 710 ~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~ 789 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML 789 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHH
Confidence 99999999999999999999999999999999997653 3799999999998887753
Q ss_pred chhhHHHHHHHH----hcCCCChhHHHHHHHHHHHHhccCCC-C--CC-hhhhHHHHHh-hcCCCCHHHHHHHHHHHHHH
Q 000167 969 LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSG-F--PD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 969 l~~ll~~l~~~L----~~~~~~~~~R~~~l~~L~~~l~~~~~-~--~~-~~~ll~pl~~-~L~D~~~dVR~aA~~~l~~l 1039 (1972)
+..+++.+...+ .++..+..+|..++..|.......+. . +. ...++.+++. ++.|.+++||.+|..+++.+
T Consensus 790 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 790 VQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp SGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 233556555555 33211467898888887776665543 1 11 2356777777 99999999999999999887
Q ss_pred HH
Q 000167 1040 LR 1041 (1972)
Q Consensus 1040 ~~ 1041 (1972)
.+
T Consensus 870 ~~ 871 (876)
T 1qgr_A 870 RK 871 (876)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 14
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=2.1e-23 Score=244.08 Aligned_cols=228 Identities=18% Similarity=0.259 Sum_probs=209.0
Q ss_pred CCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHH
Q 000167 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLG 920 (1972)
Q Consensus 842 ~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~-DsN~~V~~~Al~~l~ 920 (1972)
.|.+|++||..+|++.+++.+.|++|++|++|+..|..++..+ ..+....+.+++..|+.++. |.|..|+..|+.+++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999864 34555557999999999995 999999999999999
Q ss_pred HHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000167 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1972)
Q Consensus 921 ~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1972)
.|+..+|..|.+|+..++|.++.+++|+++.||++|..+|.+++..++++.++|.+...|+++ +|.+|.+++.||..+
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 799999999999998
Q ss_pred hccCCCC----CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000167 1001 LTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1972)
Q Consensus 1001 l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~ 1072 (1972)
+..+... ..+..+++.+..+++|++++||++|..|++.++.++|++.+.+++..|++.++++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8876421 23455566699999999999999999999999999999999999999999999999999999764
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.90 E-value=5.6e-19 Score=244.43 Aligned_cols=728 Identities=14% Similarity=0.105 Sum_probs=483.0
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcC--CcHHHHHHHHHHHHHHHHHhc--------h-
Q 000167 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD--SNAPVQDKALDALIAYLKAAD--------A- 85 (1972)
Q Consensus 17 ~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~D--sN~~vqe~~leal~~~v~~~~--------~- 85 (1972)
.+.+.+.+-..|.+|-+.|.+.-.. ..|. |...+-..+.+ .+..+...|..+|..++.... .
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~---~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPT---FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----Chhh---HHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 3455677888999999998553221 1122 33334455545 468899999888888763210 0
Q ss_pred --hhh-hhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHH
Q 000167 86 --DAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQA 155 (1972)
Q Consensus 86 --~~~-~~~~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~l~~~ 155 (1972)
... .....+-..|++- +. ..+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++..++.+|..+
T Consensus 80 w~~l~~~~~~~ik~~ll~~-l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHT-LGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHH-TTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHH-hCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 011 1122344445553 44 45556 6667776666655322 46788888888888 999999999999999
Q ss_pred HHHhCCCcc--ChhHHHHhhhhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCC
Q 000167 156 LSEFGAKII--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (1972)
Q Consensus 156 l~~fG~~~~--~~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (1972)
+..++...+ ....+++.+...+.+. +..||..|..++..+..+++.. +... .....+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~-------~~~~~i----------- 218 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FDKE-------SERHFI----------- 218 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-HTSH-------HHHHHH-----------
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhH-------HHHHHH-----------
Confidence 987653221 2456788888888887 6899999999888877765531 1000 000000
Q ss_pred CCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHH
Q 000167 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK 311 (1972)
Q Consensus 232 ~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~ 311 (1972)
+ +.+.+.+.+.+|+.|..+++.|..
T Consensus 219 --------------------------------------------------l-----~~l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 219 --------------------------------------------------M-----QVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp --------------------------------------------------H-----HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred --------------------------------------------------H-----HHHHHHcCCCCHHHHHHHHHHHHH
Confidence 0 001111234456778899999888
Q ss_pred Hhc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh------------------h--c-hhhhhhhHH
Q 000167 312 LAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR------------------T--H-FSGSSRFLL 368 (1972)
Q Consensus 312 l~~-~~ki~~~~y~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~------------------~--~-f~~~~~~ll 368 (1972)
++. .++.....+. .++..+...+.|.+..|+..|+.++..+++... . . ..++...++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 323 (876)
T 1qgr_A 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp HHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHh
Confidence 774 4433222234 677777777888888899999999998887531 1 1 224567889
Q ss_pred HHHHHHhc-------cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000167 369 PVLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1972)
Q Consensus 369 p~LL~klk-------dkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1972)
|.++..+. |....+|.++..++..+... +..-++.+++.+...+++.+|.+|..++..+..+.....+..+.
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 403 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999885 34567999999999999876 21225567777778888999999999999998877766655566
Q ss_pred HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchh-HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCC
Q 000167 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519 (1972)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~-~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~ 519 (1972)
++++.++|.+..++.|.++.||.+|..+++.+...++... ..+++..
T Consensus 404 ~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~-------------------------------- 451 (876)
T 1qgr_A 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP-------------------------------- 451 (876)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH--------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHH--------------------------------
Confidence 7789999999999999999999999999998887765320 0001100
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhh
Q 000167 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599 (1972)
Q Consensus 520 ~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~ 599 (1972)
+
T Consensus 452 --------------------------------------------------------------------------~----- 452 (876)
T 1qgr_A 452 --------------------------------------------------------------------------L----- 452 (876)
T ss_dssp --------------------------------------------------------------------------H-----
T ss_pred --------------------------------------------------------------------------H-----
Confidence 0
Q ss_pred ccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhcc---------------ccchhHHHHHHHHhcCCC-CccchHHHHHHH
Q 000167 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ---------------NLDQSVEILVRLVCMLPG-WSEKNVQVQQQV 663 (1972)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~---------------~~~~~~~~lv~~L~~~p~-~~DsN~qV~~~~ 663 (1972)
-+.+...|.+. ++.|..++..|..++...+ ...++.+.++..|...-. ..+.+..+...+
T Consensus 453 ---l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~ 528 (876)
T 1qgr_A 453 ---LQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSA 528 (876)
T ss_dssp ---HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHH
T ss_pred ---HHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHH
Confidence 02233444442 5666666666666665532 122344444444321100 111123466788
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc-----------------hhhhHHHHHHHHHHHhhcC-hh------HHH
Q 000167 664 IEVINYLAATATKFPKKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVG-PG------FIF 719 (1972)
Q Consensus 664 Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd-----------------~K~r~~a~~~L~~l~e~~~-~~------~vl 719 (1972)
++++..++...+.-....+..+++.+++.+.+ ..++..+..+|..++...+ .. .++
T Consensus 529 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 608 (876)
T 1qgr_A 529 YESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVM 608 (876)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHH
T ss_pred HHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH
Confidence 99999999877654556777888888887763 2246677888888888777 33 234
Q ss_pred HHHHHhhhhCCC--hHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCC-chhHHHHHHHHHHHHHHhhChhHH
Q 000167 720 ERLYKIMKDHKN--PKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDIK 795 (1972)
Q Consensus 720 ~~l~~~l~~~Kn--pKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~s-n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (1972)
+.++..+ .+.+ +.++..++.++..++..+|....+ +..+++.+... +.+. ++.||.+|..+++.|.+.+|+.+.
T Consensus 609 ~~l~~~l-~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 686 (876)
T 1qgr_A 609 ASLLRMF-QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG-LKNYAEYQVCLAAVGLVGDLCRALQSNII 686 (876)
T ss_dssp HHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHH-HhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444443 3332 578999999999999887754322 45677777776 8776 899999999999999999998777
Q ss_pred hhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHH
Q 000167 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1972)
Q Consensus 796 ~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1972)
+++..+-+.+++.+.. .+.+...|..++.
T Consensus 687 ~~~~~i~~~l~~~l~~---------------------------------------------------~~~~~~~~~~~~~ 715 (876)
T 1qgr_A 687 PFCDEVMQLLLENLGN---------------------------------------------------ENVHRSVKPQILS 715 (876)
T ss_dssp HHHHHHHHHHHHHHTC---------------------------------------------------TTSCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHhCC---------------------------------------------------ccccHHhhHHHHH
Confidence 7665544444433311 0012346677888
Q ss_pred HHHHHHHHccccCCCCChhhHHHHHHhccccc-----------hHHHHHHHHHHHHHHHHHcCh----------hhHhhh
Q 000167 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDS-----------NKNLVMATLITLGAVASAMGP----------AVEKSS 934 (1972)
Q Consensus 876 ~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~Ds-----------N~~V~~~Al~~l~~La~alg~----------~~~~~~ 934 (1972)
.+..++...+..+.+. +..+++.|...+.+. ...++..++.++..++..+|. .|.+|+
T Consensus 716 ~l~~i~~~~g~~~~~~-l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 794 (876)
T 1qgr_A 716 VFGDIALAIGGEFKKY-LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRV 794 (876)
T ss_dssp HHHHHHHHHGGGGGGG-HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGH
T ss_pred HHHHHHHHhchhHHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHH
Confidence 8888876443444443 366777777766543 136888889999999988763 578898
Q ss_pred hhHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHH-HHhcCCCChhHHHHHHHHHH
Q 000167 935 KGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL--------DKMVPYVTT-ALTDAKLGAEGRKDLFDWLS 998 (1972)
Q Consensus 935 ~~llp~ll~~L~D~--k~~Vr~Aa~~aL~~i~~~~~l--------~~ll~~l~~-~L~~~~~~~~~R~~~l~~L~ 998 (1972)
..+++.+...+.|. ...||.+|..||..++..+|- +.+++.+.. ++.++ ++.+|..+...+.
T Consensus 795 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~--~~~~r~~a~~a~~ 867 (876)
T 1qgr_A 795 EFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSK--TNKAKTLARWATK 867 (876)
T ss_dssp HHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcC--CHhHHHHHHHHHH
Confidence 88887777766777 689999999999999999864 234555666 77765 6888877665543
No 16
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.89 E-value=6.4e-22 Score=229.01 Aligned_cols=217 Identities=19% Similarity=0.242 Sum_probs=192.7
Q ss_pred HHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Q 000167 593 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671 (1972)
Q Consensus 593 e~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~ 671 (1972)
++...+...+++++..+|+|++||.|++|++.|.+.+.+.. .....++.+++|+.. ++.|+|++|..++|+++..++
T Consensus 38 ~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l~ 115 (266)
T 2of3_A 38 QLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVIV 115 (266)
T ss_dssp HHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHH
Confidence 45567778899999999999999999999999999987632 333446788999864 678999999999999999988
Q ss_pred HHc----CCCchhhHHHHHHHHHhhhcchh--hhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHH
Q 000167 672 ATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSA 745 (1972)
Q Consensus 672 ~~~----~~~~~~~~~~il~~LveKlgd~K--~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~ 745 (1972)
..+ ..++...+..++|.|++|+||+| +|+.+.++|..+++.++|..++..++.++ .+||+|+|.+|+.|+..+
T Consensus 116 ~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 116 ELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEYY 194 (266)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 765 34677778999999999999986 89999999999999999999999999975 899999999999999999
Q ss_pred HHHhCCCCCChhhHH---HHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcC
Q 000167 746 VEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 746 i~~fG~~~l~~k~li---~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~ 816 (1972)
++.||.. + ...+ +.+.++ ++|+|++||++|+++++++|+++|+.+..++++++|..++.|++.|...
T Consensus 195 i~~~G~~--~-~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 195 ITNAGIS--P-LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHCSG--G-GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCCC--c-cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 9999986 2 3355 777787 9999999999999999999999999999999999999999999999763
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.89 E-value=3.3e-20 Score=244.57 Aligned_cols=555 Identities=14% Similarity=0.118 Sum_probs=405.4
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHH
Q 000167 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEV 94 (1972)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v 94 (1972)
.+.+.+.|.+|+.|..|...+........ .+..+..+.+.+...+ |.+..++..+.++|..|....+. ..+...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~--~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALG--VERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGG--PEYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSC--HHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTS--GGGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHhC--HHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCc--HHHHHHH
Confidence 46789999999999999999987765432 1223555666666666 78889999999988876655432 1244556
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhhh----hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHH
Q 000167 95 CDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAVD----VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRI 169 (1972)
Q Consensus 95 ~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~~~----~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~i 169 (1972)
++.|. .++. ..+.+|+.|.+++..+++.-.++ .+++.+.....+.++.++..++.++..+...+|.. ..+.+
T Consensus 89 l~~L~-~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--~~~~l 165 (588)
T 1b3u_A 89 LPPLE-SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VKAEL 165 (588)
T ss_dssp HHHHH-HHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HHHHH
T ss_pred HHHHH-HHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--HHHHH
Confidence 66664 3444 57899999999999988764333 33444445556788999999999888776655532 14568
Q ss_pred HHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhc
Q 000167 170 LKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQEL 249 (1972)
Q Consensus 170 l~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a 249 (1972)
++.+..++.|.++.||..|...+..+...+|.+. ....+-
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~l~------------------------------------ 205 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN----VKSEII------------------------------------ 205 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH----HHHTHH------------------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh----HHHHHH------------------------------------
Confidence 8888899999999999999999998888877421 000000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHH
Q 000167 250 ISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCR 328 (1972)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~-~y~~l~~ 328 (1972)
+.+...+.+.+|..|..|++.|..++..- .+. ....+++
T Consensus 206 --------------------------------------~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~ 245 (588)
T 1b3u_A 206 --------------------------------------PMFSNLASDEQDSVRLLAVEACVNIAQLL--PQEDLEALVMP 245 (588)
T ss_dssp --------------------------------------HHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CHHHHHHHTHH
T ss_pred --------------------------------------HHHHHHhcCCcHHHHHHHHHHHHHHHHhC--CHHHHHHHHHH
Confidence 12333345667888999999888876421 111 1345778
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC------ChH
Q 000167 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL------NLV 402 (1972)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~------~l~ 402 (1972)
.+...+.|.+..|+..|+.+++.++..++.. .+...++|.++..++|..+.||.++..++..+...... .++
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 8888888999999999999999999988764 35677899999999999999999999999999876111 245
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHH
Q 000167 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1972)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~ 482 (1972)
.+++.+...+++.+|.+|..++.+|..+....+... ..+.++|.+..++.|.+++||.++..+++.+...+|...+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~- 399 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDN---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL- 399 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH---HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHH-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHH-
Confidence 688888888899999999999999888776655432 2467889999999999999999999999988887764210
Q ss_pred HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000167 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (1972)
Q Consensus 483 ~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~ 562 (1972)
. ...
T Consensus 400 --~-----------~~~--------------------------------------------------------------- 403 (588)
T 1b3u_A 400 --S-----------QSL--------------------------------------------------------------- 403 (588)
T ss_dssp --H-----------HHH---------------------------------------------------------------
T ss_pred --H-----------HHH---------------------------------------------------------------
Confidence 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHH
Q 000167 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEIL 642 (1972)
Q Consensus 563 g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~l 642 (1972)
-+.+...+.+.+|+.|..+++.+..+....+... ..+.+
T Consensus 404 ----------------------------------------lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l 442 (588)
T 1b3u_A 404 ----------------------------------------LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF-FDEKL 442 (588)
T ss_dssp ----------------------------------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG-CCHHH
T ss_pred ----------------------------------------HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH-HHHHH
Confidence 0123344567899999999999998877643321 11233
Q ss_pred HHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcChhHHHH
Q 000167 643 VRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFE 720 (1972)
Q Consensus 643 v~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~vl~ 720 (1972)
+..+.. .+.|.+..|...++..+..++..++. ......++|.|+.-+.| ..+|..+..++..+++.++.+....
T Consensus 443 ~~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~ 518 (588)
T 1b3u_A 443 NSLCMA--WLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTK 518 (588)
T ss_dssp HHHHHH--GGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 444332 46788889999999999998886542 12346778888765555 3579999999999999888765555
Q ss_pred HHHHhh---hhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 000167 721 RLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1972)
Q Consensus 721 ~l~~~l---~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~L 786 (1972)
.+++.+ ..+.++.||..++.+|..+...+|...+ ...+++.+..+ +.+.|+.||..|..++..+
T Consensus 519 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~p~l~~l-~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKL-TQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH-HHHHHHHHHHH-TTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh-HHHHHHHHHHH-cCCCchhHHHHHHHHHHHh
Confidence 555443 3578899999999999999987765321 14577777777 8999999999999998765
No 18
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.7e-23 Score=243.59 Aligned_cols=218 Identities=17% Similarity=0.216 Sum_probs=164.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHH------HHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC---
Q 000167 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI------LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--- 676 (1972)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~------lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~--- 676 (1972)
+.++|.|++||+|++|+++|.+++..........+. +...+.+ .++|+|++|+..+++++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk--~l~DsN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ--YITDSNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH--HTTCSSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 668999999999999999999999874332111111 1222321 46899999999999999999986542
Q ss_pred ---CchhhHHHHHHHHHhh-hcchh--hhHHHHHHHHHHHhhcCh-hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHh
Q 000167 677 ---FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 749 (1972)
Q Consensus 677 ---~~~~~~~~il~~LveK-lgd~K--~r~~a~~~L~~l~e~~~~-~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~f 749 (1972)
+...++..++|.|++| +||.| ++..+.++|..+++...+ ..+++.++.++ ++||||++.+++.||..++.+|
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh
Confidence 1234678899999999 68875 789999999999997665 56677777764 8999999999999999999999
Q ss_pred CCCCCChhhHH----HHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhH----HhhhhcccHHHHHHHHHHHhcCCCCCC
Q 000167 750 GVSHLKLKDLI----DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFEGT 821 (1972)
Q Consensus 750 G~~~l~~k~li----~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l----~~~L~~lkp~ll~~Le~efek~~~~~~ 821 (1972)
|...++++..+ +.+.++ ++|+|++||++|+.++++||+|+|+.+ ..|+++++|++++.|+++|+|+.++++
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~~~ 249 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPS 249 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC---
T ss_pred CCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCCCC
Confidence 99888876544 456676 999999999999999999999999865 367899999999999999999988766
Q ss_pred CCCCCc
Q 000167 822 VVPKKT 827 (1972)
Q Consensus 822 ~~p~r~ 827 (1972)
|+|.+.
T Consensus 250 ~~~~~~ 255 (278)
T 4ffb_C 250 SSKMLF 255 (278)
T ss_dssp ----CC
T ss_pred CCCcch
Confidence 666554
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.46 E-value=6.5e-11 Score=150.75 Aligned_cols=377 Identities=12% Similarity=0.069 Sum_probs=268.2
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHc----------
Q 000167 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (1972)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~---------- 674 (1972)
.++.++.+.+-..|.+|-+.|.++-.... ......++.++.. .+.+..|.+.+.-++..++...
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENL--PTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 45677888899999999999987544211 1133455566542 2346778888888888876421
Q ss_pred --CCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcChh----HHHHHHHHhhhhCC--ChHHHHHHHHHHHH
Q 000167 675 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 744 (1972)
Q Consensus 675 --~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~----~vl~~l~~~l~~~K--npKv~~e~l~~L~~ 744 (1972)
..+.......+-..|++.+.+ .++ ..+..++..++....++ -+++.++..+ .+. ++.++..++.+|..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 234444445566667777766 357 77888888888775443 3566666665 455 89999999999999
Q ss_pred HHHHhCCCCC--ChhhHHHHHHhcCCCCC--chhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCC
Q 000167 745 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1972)
Q Consensus 745 ~i~~fG~~~l--~~k~li~~l~~~gL~~s--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~ 820 (1972)
+++++....+ ....+++.+..+ +.+. ++.||.+|.++++.+..+++..+.. . .+
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-------~-------~~------- 214 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDK-------E-------SE------- 214 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-------H-------HH-------
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh-------h-------HH-------
Confidence 9998732222 245677777776 8888 7999999999988764332211100 0 00
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChh-hHHHH
Q 000167 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 899 (1972)
Q Consensus 821 ~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~-eL~~~ 899 (1972)
...+.+.+...+.+.++.+|..+++.+..++......+.+. +. +++..
T Consensus 215 ------------------------------~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~ 263 (462)
T 1ibr_B 215 ------------------------------RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAI 263 (462)
T ss_dssp ------------------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHH
T ss_pred ------------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 00012233344567789999999999999998654555554 36 88888
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHc---------------------ChhhHhhhhhHHHHHHHHhCCC-------cHH
Q 000167 900 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGDN-------KKH 951 (1972)
Q Consensus 900 L~~~L~DsN~~V~~~Al~~l~~La~al---------------------g~~~~~~~~~llp~ll~~L~D~-------k~~ 951 (1972)
+...+.|.+..|+..|+..+..++... ..-+++|+..++|.++..+.+. ...
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888889999999999999999998753 2235567889999999998643 347
Q ss_pred HHHHHHHHHHHHHHhcCchhhH----HHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCC
Q 000167 952 MRECTLTVLDAWLAAVHLDKMV----PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1024 (1972)
Q Consensus 952 Vr~Aa~~aL~~i~~~~~l~~ll----~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~ 1024 (1972)
+|.+|..+|..++..+| +.++ |.+...|.+. +|..|..++..+......... .+.+..++..++.+|.|.
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 4444 4555556655 799999999999877664432 133445666699999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCh
Q 000167 1025 SSDVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 1025 ~~dVR~aA~~~l~~l~~~~G~ 1045 (1972)
++.||.+|..++..+...++.
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998876
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.43 E-value=7.2e-11 Score=150.30 Aligned_cols=380 Identities=13% Similarity=0.088 Sum_probs=264.6
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCC--cHHHHHHHHHHHHHHHHHhch---------
Q 000167 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS--NAPVQDKALDALIAYLKAADA--------- 85 (1972)
Q Consensus 17 ~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds--N~~vqe~~leal~~~v~~~~~--------- 85 (1972)
.+.+.+.+-..|.+|-+.|.+ +... +.|.| ...+...+.++ +..+...|...|..+++....
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~-~~~~---~~~~~---~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLER-AAVE---NLPTF---LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHH-HHHH---HHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHH-HHhh---ChHHH---HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 345667888899999999877 4321 12334 33333444443 788999998888888754210
Q ss_pred --hhh-hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcC--ChhhHHHHHHHHHHHH
Q 000167 86 --DAG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQAL 156 (1972)
Q Consensus 86 --~~~-~~~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~~----~~v~~~L~~~~~~K--npKv~~~~l~~l~~~l 156 (1972)
... .....|-..|++.+....+.+ ..+..++-.++..+.+ ..+++.|...+.+. ++.++.+++.+|..+.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 011 112335555666543345566 6666666666655433 36788888888887 8999999999999999
Q ss_pred HHhCCCccC--hhHHHHhhhhhhcCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCC
Q 000167 157 SEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTAR 232 (1972)
Q Consensus 157 ~~fG~~~~~--~k~il~~l~~ll~~~--d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~ 232 (1972)
+.+....+. ...+++.+..++.+. +..||.+|..++..+..++++ .. .. .. +.+
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-----~~-~~---~~-------~~~------ 216 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-----NF-DK---ES-------ERH------ 216 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-----HH-TS---HH-------HHH------
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-----hh-hh---hH-------HHH------
Confidence 887433322 356889999999998 799999998877665433321 11 00 00 000
Q ss_pred CCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHH
Q 000167 233 PTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312 (1972)
Q Consensus 233 P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l 312 (1972)
| ++ ..+.+.+.+.++..|..+++.|..+
T Consensus 217 ----------------------------------------~-------l~-----~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 217 ----------------------------------------F-------IM-----QVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp ----------------------------------------H-------HH-----HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----------------------------------------H-------HH-----HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 0 00 0111123445667789999999888
Q ss_pred hc-CCCCCCCChH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh---------------------hhchhhhhhhHHH
Q 000167 313 AS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---------------------RTHFSGSSRFLLP 369 (1972)
Q Consensus 313 ~~-~~ki~~~~y~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L---------------------~~~f~~~~~~llp 369 (1972)
+. .++.....+. .++..+...+.|.+..|+..|+..+..++... ..-+.+|...++|
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 73 4443333445 78888888888999999999999999998764 1224567789999
Q ss_pred HHHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000167 370 VLLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (1972)
Q Consensus 370 ~LL~klkd-------kk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (1972)
.+++.+.+ ....+|.++..+|..+... +..-+..+++.+...+++.+|++|..++..+..+.+.+....+..
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99998854 3457899999999999886 112244567777788889999999999999998887665444556
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
+++.++|.+..++.|+++.||.+|+.+++.+...++.
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 7799999999999999999999999999999999886
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.23 E-value=8.9e-09 Score=135.90 Aligned_cols=479 Identities=13% Similarity=0.160 Sum_probs=291.5
Q ss_pred hhhhhhhHHHHHHHHhccCcHHHH-HHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000167 360 FSGSSRFLLPVLLEKLKEKKPTVA-ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1972)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~-~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (1972)
|..+.+.-+..+-+.|...+...+ +++...+..+. .| ...+..+..++..++++++.+|+-+..++..+....+
T Consensus 7 f~~~~~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~-~G-~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--- 81 (591)
T 2vgl_B 7 FTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMT-VG-KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--- 81 (591)
T ss_dssp TCCCSSSHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-TT-CCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH---
T ss_pred cccccCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH-CC-CChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc---
Confidence 433334445566666766665444 44444443333 22 4556778888888899999999888888877665421
Q ss_pred HHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCC
Q 000167 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQT 518 (1972)
Q Consensus 439 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~ 518 (1972)
..+-.++..+.+.|+|+++.||..|..+++.+ +...+.+
T Consensus 82 --e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~~~~----------------------------------- 120 (591)
T 2vgl_B 82 --DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI----RVDKITE----------------------------------- 120 (591)
T ss_dssp --HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC----CSGGGHH-----------------------------------
T ss_pred --hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC----ChHHHHH-----------------------------------
Confidence 12244677888899999999998887666432 1111110
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHh
Q 000167 519 SGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598 (1972)
Q Consensus 519 ~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~ 598 (1972)
T Consensus 121 -------------------------------------------------------------------------------- 120 (591)
T 2vgl_B 121 -------------------------------------------------------------------------------- 120 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCC-
Q 000167 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF- 677 (1972)
Q Consensus 599 ~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~- 677 (1972)
.+-+.+...|.|.++..|..|+..+..++....+.-.. ..++..+.. .+.|.|..|...++.++..+....+..
T Consensus 121 --~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~--lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 --YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRD--LIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp --HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHH--TTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred --HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHH--HhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 01134556677778888888888888877643322111 123333322 457888888888888888776643321
Q ss_pred chhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcC--hhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhC--C
Q 000167 678 PKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG--V 751 (1972)
Q Consensus 678 ~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~--~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG--~ 751 (1972)
........+..|+..+.+ +-.+-...++|..++.... ...+++.+... ..+.|+.|+.+|+..+..+....+ .
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~-l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPR-LSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTC-SCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 011122334444444433 2233333333322221100 12344444444 368899999999988776543221 1
Q ss_pred CCCC--hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000167 752 SHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 829 (1972)
Q Consensus 752 ~~l~--~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r 829 (1972)
..+. ...+...+..+ + +++++||..|...++.+.......+..+
T Consensus 275 ~~~~~~~~~~~~~L~~L-~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~-------------------------------- 320 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLVTL-L-SGEPEVQYVALRNINLIVQKRPEILKQE-------------------------------- 320 (591)
T ss_dssp BSHHHHHHHTHHHHHHH-T-TSCHHHHHHHHHHHHHHHHHCCSTTTTC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHH-h-cCCccHHHHHHHHHHHHHHhChHHHHHH--------------------------------
Confidence 1111 12233333343 3 5889999999999888754321111000
Q ss_pred cccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchH
Q 000167 830 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909 (1972)
Q Consensus 830 ~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~ 909 (1972)
+. .++- ..+.+|.+|.++++.+..++.+ ....+++..|...+.|.+.
T Consensus 321 ------------------------~~-~~~~-~~~d~~~Ir~~al~~L~~l~~~-------~nv~~iv~~L~~~l~~~d~ 367 (591)
T 2vgl_B 321 ------------------------IK-VFFV-KYNDPIYVKLEKLDIMIRLASQ-------ANIAQVLAELKEYATEVDV 367 (591)
T ss_dssp ------------------------TT-TTSC-CTTSCHHHHHHHHHHHHHTCCS-------STHHHHHHHHHHHTTSSCH
T ss_pred ------------------------HH-hhee-ccCChHHHHHHHHHHHHHHCCh-------hhHHHHHHHHHHHHhcCCH
Confidence 00 1111 1233499999999888766532 2247788888888888888
Q ss_pred HHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCCh
Q 000167 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 987 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~~ 987 (1972)
.++..++..|+.++... .+....+++.++..+.+....|+..+..++..++...+ ...+++.+...+.+-. .|
T Consensus 368 ~~r~~~v~aI~~la~~~----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~-~~ 442 (591)
T 2vgl_B 368 DFVRKAVRAIGRCAIKV----EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD-EP 442 (591)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC-SH
T ss_pred HHHHHHHHHHHHHHHhC----hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc-CH
Confidence 89999999998888653 34456778888888999999999988899999888765 2456777777776432 47
Q ss_pred hHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000167 988 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~ 1045 (1972)
.+|..++ |+..-+... ..+....+..++..+.|.++.||.++..++..+....+.
T Consensus 443 ~~~~~~~-wilGey~~~--~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 443 DARAAMI-WIVGEYAER--IDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp HHHHHHH-HHHHTTCTT--CTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHH-HHHHccccc--ccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 7766554 543222211 123445666677788888999999998888888876654
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.19 E-value=2.7e-08 Score=131.35 Aligned_cols=492 Identities=13% Similarity=0.151 Sum_probs=308.1
Q ss_pred chhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
++-+.+.+.+=.+|++++..+..+. .+. +...++..+.+.+.+.|..+...+...+..+++.- ...+..+
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~-----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~ 87 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGK-----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMA 87 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTC-----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHH
Confidence 4556677888888999999887654 333 23334445556788999988888888887776641 2235667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
++.+.+-+.++++.+|..|..++..+.. ..-.+.+++.+..++.+.+|.||..++..+.++....+. .+.. ..++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~--~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED--QGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH--HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc--ccHH
Confidence 7888888999999999776554443321 112345677788999999999999999999998875543 2211 3588
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhCch--------hHHHhHhhc---cHHHHHHHHHHHhcCCCCCCCCCCCCcc
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMR--------PLERSIEKL---DDVRRNKLSEMIAGSGGDVATGTSSARV 516 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~--------~~~~~l~~L---d~~~~kkI~e~~~~~~~~~~~~~~~~~~ 516 (1972)
+.+.++|+|.++.||.+|..+|+.+...-++. .+..++..| ++-.+-++-+.+....
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~------------ 230 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN------------ 230 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC------------
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC------------
Confidence 99999999999999999999998887654321 133333322 2222223333222110
Q ss_pred CCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 000167 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1972)
Q Consensus 517 ~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (1972)
|. .+++...
T Consensus 231 ------------------------------~~-----------------------------------------~~~~~~~ 239 (591)
T 2vgl_B 231 ------------------------------PK-----------------------------------------DDREAQS 239 (591)
T ss_dssp ------------------------------CC-----------------------------------------SHHHHHH
T ss_pred ------------------------------CC-----------------------------------------ChHHHHH
Confidence 00 1122222
Q ss_pred HhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhc--c-cc-chhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHH
Q 000167 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV--Q-NL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672 (1972)
Q Consensus 597 ~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~--~-~~-~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~ 672 (1972)
.+ +.+...|.|.++..|.+|+..+..+.... + +. ....+.+...|.. +.+++..|.-.++..+..++.
T Consensus 240 ~l-----~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~---L~~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 240 IC-----ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT---LLSGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HH-----HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH---HTTSCHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHH
Confidence 11 34556788999999999999888664322 1 11 0011112221111 112344578889999999988
Q ss_pred HcCCCchhhHHHHHHHHHhhhcc-hhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCC
Q 000167 673 TATKFPKKCVVLCLLGISERVAD-IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1972)
Q Consensus 673 ~~~~~~~~~~~~il~~LveKlgd-~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~ 751 (1972)
..+........ .++-...| ..+|..+.++|..++.....+.++.++..++ .+.++.++.+++.++..+...|..
T Consensus 312 ~~p~~~~~~~~----~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 312 KRPEILKQEIK----VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HCCSTTTTCTT----TTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hChHHHHHHHH----hheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhChh
Confidence 76654322221 11222233 3468888888888887777777888888876 567899999999999988876532
Q ss_pred CCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 000167 752 SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1972)
Q Consensus 752 ~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~ 831 (1972)
....+++.+.++ +.+.+..|+..++..+..+.+..... .
T Consensus 387 ---~~~~~v~~Ll~l-l~~~~~~v~~e~i~~l~~ii~~~p~~--------~----------------------------- 425 (591)
T 2vgl_B 387 ---SAERCVSTLLDL-IQTKVNYVVQEAIVVIRDIFRKYPNK--------Y----------------------------- 425 (591)
T ss_dssp ---HHHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHSCSS--------C-----------------------------
T ss_pred ---HHHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHCcch--------H-----------------------------
Confidence 234577777777 88888888888877666554322100 0
Q ss_pred cccCCCCCCCCCCCCcccccccccHHHHHhcCC-CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHH
Q 000167 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (1972)
Q Consensus 832 ~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d-~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~ 910 (1972)
..+...+.+.+.+ .....|..++-.+++.. ..+. + ..+++..|.+++.+.+..
T Consensus 426 --------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~----~~~~-~-~~~~l~~l~~~~~~~~~~ 479 (591)
T 2vgl_B 426 --------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYA----ERID-N-ADELLESFLEGFHDESTQ 479 (591)
T ss_dssp --------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC----TTCT-T-HHHHHHHHSTTCSSSCHH
T ss_pred --------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccc----cccc-C-HHHHHHHHHHhhccCCHH
Confidence 0011233333432 34555666665555432 2222 2 367888888888888888
Q ss_pred HHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh-CC-CcHHHHHHHHHHHH
Q 000167 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GD-NKKHMRECTLTVLD 961 (1972)
Q Consensus 911 V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D-~k~~Vr~Aa~~aL~ 961 (1972)
|+..++.++..+....... ....+..+++.+ .| ....||+-|...+.
T Consensus 480 vr~~~l~a~~Kl~~~~p~~----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 480 VQLTLLTAIVKLFLKKPSE----TQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHHHHHHHHHTTCCST----THHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCchH----HHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 9999898888887644322 124555566554 45 55678877655443
No 23
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.17 E-value=2.2e-10 Score=154.21 Aligned_cols=195 Identities=16% Similarity=0.203 Sum_probs=167.1
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh--hhchhhhhhh
Q 000167 290 FWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSRF 366 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~k-i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~~ 366 (1972)
.++++...+-.+|+++...+..++.+.. .....+ .++..|++.+.|.+.. ..|+.+++.||... ...++||+-.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 4455655556789999999998775332 222233 7999999999988766 89999999999655 4589999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000167 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1972)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (1972)
++|.+|+.++||...|++|+..|+++++.. +...+..++|.|+.+|++. .|+.|.+++.++..+.... +..+...++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~ 174 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMP 174 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhcc
Confidence 999999999999999999999999999987 2234578899999999865 5999999999999998877 567788899
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhc
Q 000167 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1972)
Q Consensus 445 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~L 488 (1972)
+++|.+..++.|..++|.++|.+++..++.+++++++.++++.|
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~ 218 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL 218 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence 99999999999999999999999999999999999999999876
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.16 E-value=5.7e-09 Score=132.43 Aligned_cols=391 Identities=11% Similarity=0.050 Sum_probs=263.2
Q ss_pred hhhhcCC-----ChhhhhcCCChHHHHHHHHHHHHHhhccCCCC-chhHH--hhhhhhHhhhcCC-cHHHHHHHHHHHHH
Q 000167 8 LKEAKKL-----PWEDRLLHKNWKVRNEANIDLAALCDSITDPK-DNRIR--ELGPLFKKTVADS-NAPVQDKALDALIA 78 (1972)
Q Consensus 8 ~~~~~~l-----pl~erl~~k~WK~R~~ayeel~~~~~~~~d~~-~~~~~--~~~~~~~k~v~Ds-N~~vqe~~leal~~ 78 (1972)
..+|... ++.+.+.+.+...|..|...|.+.+....++. ...+. ...+.+.+.+.+. |..+|..++.+|..
T Consensus 12 ~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTN 91 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3466655 36788999999999999999999875322221 11121 2345556677777 99999999999988
Q ss_pred HHHHhchhhhhhh-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHhhc-CChhhHHHHH
Q 000167 79 YLKAADADAGRYA-KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAIKN-KVAKAVVPAI 149 (1972)
Q Consensus 79 ~v~~~~~~~~~~~-~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~--~-----~~v~~~L~~~~~~-KnpKv~~~~l 149 (1972)
+...........+ ..+++.|++-+-+..+.+|+.|..++..+.+... . ..+++.|...+.+ .++.++..++
T Consensus 92 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 92 IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 8754322111111 3577888776434688999999999888876421 1 2456777777774 7899999999
Q ss_pred HHHHHHHHHhCCC--ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhc
Q 000167 150 DVMFQALSEFGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV 227 (1972)
Q Consensus 150 ~~l~~~l~~fG~~--~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~ 227 (1972)
.+|..+....+.. ..-+..+++.|..++.+.|..||..+..++..+..... . . .+.+ .
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-----~-~--------~~~~---~--- 231 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-----D-K--------IQAV---I--- 231 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-----H-H--------HHHH---H---
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-----H-H--------HHHH---H---
Confidence 9998887543221 11236789999999999999999988766554432110 0 0 0000 0
Q ss_pred cCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHH
Q 000167 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVA 307 (1972)
Q Consensus 228 ~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~ 307 (1972)
. . + + + +.+...+.+.+|..|..|+.
T Consensus 232 ------------------------~-~--~-----------------------~---i--~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 232 ------------------------D-A--G-----------------------V---C--RRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp ------------------------H-T--T-----------------------T---H--HHHHHHTTCSCHHHHHHHHH
T ss_pred ------------------------H-c--C-----------------------c---H--HHHHHHHCCCchhHHHHHHH
Confidence 0 0 0 0 0 23445566788999999999
Q ss_pred HHHHHhcCCCCCCCC-h-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh-hhHHHHHHHHhccCcHHHHH
Q 000167 308 ELTKLASTKRIAPGD-F-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAE 384 (1972)
Q Consensus 308 ~L~~l~~~~ki~~~~-y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~ 384 (1972)
.|..++.+..-.... + ..+++.|...+.+.+..++..|+.+|+.|+.+-........ ..++|.++..+.+..+.|+.
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 999887532100000 0 13778888889988999999999999999865433333333 37899999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH------HHHhhhhH-----H
Q 000167 385 SLTQTLQAMHKAGC-LNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA------VLKVHKDY-----V 447 (1972)
Q Consensus 385 aa~~aL~al~~~~~-~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~------l~~~l~~l-----~ 447 (1972)
.+..+|..+...+. ... ..+++.|...++++++.+|..++..|..++...+... +.++...+ +
T Consensus 337 ~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence 99999999876410 011 2377888899999999999999999998886543211 11233333 5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
+.+...+++.+.+||+.|..++..+.
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 67788889999999999988877554
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.10 E-value=1.2e-08 Score=132.76 Aligned_cols=382 Identities=10% Similarity=0.055 Sum_probs=263.5
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhH--HhhhhhhHhhhcCC-cHHHHHHHHHHHHHHHHHhchhhhhhh-
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI--RELGPLFKKTVADS-NAPVQDKALDALIAYLKAADADAGRYA- 91 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~--~~~~~~~~k~v~Ds-N~~vqe~~leal~~~v~~~~~~~~~~~- 91 (1972)
+.+.|.+.+|..|..|...|.+.+....++.-..+ ....+.+.+++.+. |..+|..++.+|..+...... ....+
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~ 170 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVV 170 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 46778899999999999999998764322211111 12345566778887 999999999999877653221 11221
Q ss_pred -HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh--hh-----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000167 92 -KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (1972)
Q Consensus 92 -~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~--~~-----~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~- 162 (1972)
...++.|+.-+-...+.+|+.|..++..++... .. ..+++.|...+.+.++.++..++.+|..+....+..
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 245677776533368899999999988887542 11 245677788888889999999999998876543221
Q ss_pred -ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhh
Q 000167 163 -IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241 (1972)
Q Consensus 163 -~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~ 241 (1972)
..-...+++.|..++.+.|..||..|..++..|.....+ ..+.+ ++
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~--------------~~~~~---~~---------------- 297 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE--------------AIQAV---ID---------------- 297 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH--------------HHHHH---HH----------------
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH--------------HHHHH---Hh----------------
Confidence 112356899999999999999999988877666532110 00000 00
Q ss_pred hHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCC
Q 000167 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 321 (1972)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~ 321 (1972)
. + + + +.+...+.+.+|..|..|+..|..++.+..-...
T Consensus 298 ----------~----~-----------------------~---v--~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 335 (530)
T 1wa5_B 298 ----------V----R-----------------------I---P--KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335 (530)
T ss_dssp ----------T----T-----------------------C---H--HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ----------c----C-----------------------c---H--HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH
Confidence 0 0 0 0 2344556778899999999999988753210000
Q ss_pred C-h-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh-hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000167 322 D-F-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1972)
Q Consensus 322 ~-y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~-~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~ 398 (1972)
. + ..+++.|...+.+.+..++..|+.+|+.|+.+-......++ ..++|.|+..+.+....|+..+..+|..+... .
T Consensus 336 ~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~ 414 (530)
T 1wa5_B 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG-G 414 (530)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-C
Confidence 0 0 14677888899988999999999999999875433333333 36889999999999999999999999999875 2
Q ss_pred CC----h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhh--hhHHHHHHHHhcCCC
Q 000167 399 LN----L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVH--KDYVPICMECLNDGT 458 (1972)
Q Consensus 399 ~~----l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l--~~l~p~l~k~l~Ds~ 458 (1972)
.+ . ..+++.|...+.+.++.++..++..|..++...+.. .+...+ ...++.|..+++|.+
T Consensus 415 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~ 494 (530)
T 1wa5_B 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494 (530)
T ss_dssp TTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC
Confidence 21 0 136788888999999999999999999988754321 111111 124778888899999
Q ss_pred hHHHHHHHHHHHHHHH
Q 000167 459 PEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 459 ~~VR~aA~~~l~~l~~ 474 (1972)
++|++.|..++..++.
T Consensus 495 ~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 495 DKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999988887765543
No 26
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.07 E-value=2e-06 Score=120.35 Aligned_cols=699 Identities=11% Similarity=0.087 Sum_probs=372.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCCccCh------hH-HHHhhh
Q 000167 103 LTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIPP------KR-ILKMLP 174 (1972)
Q Consensus 103 l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv~~~~l~~l~~~l~~fG~~~~~~------k~-il~~l~ 174 (1972)
+++.+..|..|.+.|..+-+ +|+ .+..+..-+ .+.++.++..|...|.+.++..- ..++. |. ++..+.
T Consensus 17 ~~~d~~~r~~A~~~L~~~~~--~p~-~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w-~~l~~~~~~~ir~~ll~~l~ 92 (971)
T 2x1g_F 17 YRSNSQNQAITHEWLTDAEA--SPQ-AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHW-HEVPPENREELKQKILESIV 92 (971)
T ss_dssp HTSTTTC----CHHHHHTTT--STH-HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCG-GGCCGGGHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHc--CHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccH-hhCCHHHHHHHHHHHHHHHH
Confidence 34455677778777665432 232 222222222 35788999999999999887532 23432 22 444444
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCC
Q 000167 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254 (1972)
Q Consensus 175 ~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~ 254 (1972)
..- ...+.||.....++++|.++..+ .-.. + +.+|-..+..-. .|.
T Consensus 93 ~~~-~~~~~vr~kl~~~la~i~~~~~p-~Wp~-~--------l~~l~~~~~~~~---~~~-------------------- 138 (971)
T 2x1g_F 93 RFA-GGPKIVLNRLCISLGAYIVHMLG-EWPG-A--------IEEVINTFQNQR---MPN-------------------- 138 (971)
T ss_dssp HHT-TSCHHHHHHHHHHHHHHHHHTTC-C---------------HHHHHHHHTC--------------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHHccc-cccH-H--------HHHHHHHHhccc---ccc--------------------
Confidence 443 23689999999999999888764 1111 1 122222221100 000
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 000167 255 GPGPSEESTADVPPEID-EYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKL 333 (1972)
Q Consensus 255 ~~~~~~~~~~~~~~~iD-~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~ 333 (1972)
++ +-...-...|+..++ ++.+.. . ...|+..+.. .+.. ....++..+.+.
T Consensus 139 ---------------~~~~~~~~~~l~iL~~l~-EEi~~~-~---~~~~r~~~~~--~l~~-------~~~~vl~ll~~~ 189 (971)
T 2x1g_F 139 ---------------VSADVQLWIMLEVLTAIP-EEAQVI-H---TSVKRVVLRA--EIAK-------RVQLVIHTVERY 189 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHH-HHHHHC-C---CSSCHHHHHH--HHHT-------THHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHhH-HHHhcc-C---cHHHHHHHHH--HHHH-------HHHHHHHHHHHH
Confidence 00 000000123444443 222211 1 1123322221 1111 245566666666
Q ss_pred hcc--cC------HHHHHHHHHHHHHHHH--HhhhchhhhhhhHHHHHHHHhc----------------cCcHHHHHHHH
Q 000167 334 ITD--VN------IAVAVEAIQAIGNLAR--GLRTHFSGSSRFLLPVLLEKLK----------------EKKPTVAESLT 387 (1972)
Q Consensus 334 l~D--~N------~~V~~~A~~~l~~La~--~L~~~f~~~~~~llp~LL~klk----------------dkk~~V~~aa~ 387 (1972)
+.+ .+ ..+...+++|+..... .+... ....+++.++. +. +..+.+++++.
T Consensus 190 l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 265 (971)
T 2x1g_F 190 LKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCL 265 (971)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHH
T ss_pred HhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHH
Confidence 652 21 2688889999998877 34333 44567777776 51 25678999999
Q ss_pred HHHHHHHHhcC-----CChHhHHHHHHH-------HhhcCCh---HHHHHHHHHHHHHHHhcChhH----------HHHh
Q 000167 388 QTLQAMHKAGC-----LNLVDVVEDVKT-------SVKNKVP---LVRSLTLNWVTFCIETSSKAA----------VLKV 442 (1972)
Q Consensus 388 ~aL~al~~~~~-----~~l~~il~~l~~-------~l~~Knp---~vR~~~l~~L~~~l~~~~~~~----------l~~~ 442 (1972)
+|+..++.... ..+..+++.+.. +++++.. ......+.++..+.+.+.... ....
T Consensus 266 ~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (971)
T 2x1g_F 266 KTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSIL 345 (971)
T ss_dssp HHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHH
Confidence 99999987411 012334444433 2233343 666677777777665543211 1245
Q ss_pred hhhHHHHHHHHhcC-----CChHHHHHHHHHHHHHHH-HhCc------h----hHHHhHhhccHHHHHHHHHHHhcCCCC
Q 000167 443 HKDYVPICMECLND-----GTPEVRDAAFSVLAAIAK-SVGM------R----PLERSIEKLDDVRRNKLSEMIAGSGGD 506 (1972)
Q Consensus 443 l~~l~p~l~k~l~D-----s~~~VR~aA~~~l~~l~~-~~ge------~----~~~~~l~~Ld~~~~kkI~e~~~~~~~~ 506 (1972)
+..+++.+..++.. .+.+|+..+.+....+.. .... . .+.+++..| +..++.+..-
T Consensus 346 l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-------l~~l~~~~~~- 417 (971)
T 2x1g_F 346 VHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHL-------TRILVRKSEQ- 417 (971)
T ss_dssp HHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH-------HHHHHHHTSC-
T ss_pred HHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH-------HHHHHHHhcC-
Confidence 67788888887743 578898888888777766 3210 1 112222222 2222222100
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (1972)
Q Consensus 507 ~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~ 586 (1972)
|.. ++..
T Consensus 418 ----------------------------------------p~~--------------------------------~~~~- 424 (971)
T 2x1g_F 418 ----------------------------------------PDE--------------------------------KSLA- 424 (971)
T ss_dssp ----------------------------------------CCT--------------------------------TTTS-
T ss_pred ----------------------------------------CCc--------------------------------cccc-
Confidence 000 0000
Q ss_pred CCCCHHHHH-------------HHhhccCc--------HHHHHhhhc-----CChHHHHHHHHHHHHHHHhccc-cchhH
Q 000167 587 SEMSLEEIE-------------SRLGSLIP--------ADTVGQLKS-----AVWKERLEAISSLRQQVEAVQN-LDQSV 639 (1972)
Q Consensus 587 ~~~s~ee~e-------------~~~~~ll~--------~~l~~~L~s-----~~Wk~Rl~a~e~L~~~v~~~~~-~~~~~ 639 (1972)
..+.+|-+ ..+..+++ +-+...|.+ .+|+.|.+|+-.+..+.++... .....
T Consensus 425 -~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l 503 (971)
T 2x1g_F 425 -KWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI 503 (971)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH
T ss_pred -ccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 00111100 00111222 122233333 7999999999999988666332 12233
Q ss_pred HHHHHHHhcCCCCc--cchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcChhH
Q 000167 640 EILVRLVCMLPGWS--EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGF 717 (1972)
Q Consensus 640 ~~lv~~L~~~p~~~--DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~ 717 (1972)
+.++..+. .+. |.+..|...++.++..+.+-..... ..+..+++.|+..+ |++++..|..++..+++.++..
T Consensus 504 ~~l~~~l~---~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~~~v~~~A~~al~~l~~~~~~~- 577 (971)
T 2x1g_F 504 PRLMRVLA---EIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-NSSMSAQATLGLKELCRDCQLQ- 577 (971)
T ss_dssp HHHHHHHH---HSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHHHH---hcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHh-
Confidence 44555443 333 5688999999999988887544322 45667777777766 4667788888888887665321
Q ss_pred HHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCC--CchhHHHHHHHHHHHHHHhhC-hhH
Q 000167 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDI 794 (1972)
Q Consensus 718 vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~--sn~~VR~aA~~ll~~Ly~~~G-~~l 794 (1972)
+.+++ ..++..+..+ +.. .+..+|..+.++++.+...++ ...
T Consensus 578 ----l~p~~------------------------------~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 578 ----LKPYA------------------------------DPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp ----HHHHH------------------------------HHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred ----ccccH------------------------------HHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 11111 1222222222 222 345788888999999987766 446
Q ss_pred HhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHH
Q 000167 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESI 874 (1972)
Q Consensus 795 ~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eal 874 (1972)
..++..+-+.+++.++.-.+.... .++ +-....+.+
T Consensus 623 ~~~~~~ll~~l~~~l~~~~~~~~~------------------------------------~~~--------~~~~~~~~l 658 (971)
T 2x1g_F 623 PKYLDIIVSPCFEELQAICQADSK------------------------------------TPA--------ARIRTIFRL 658 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---------------------------------------CHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC------------------------------------Chh--------hHHHHHHHH
Confidence 667766666666655543211000 000 001122344
Q ss_pred HHHHHHHHHccccCC--------CC----ChhhHHHHHHhccccc--hHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHH
Q 000167 875 EAVNKILEEANKRIQ--------PA----GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1972)
Q Consensus 875 e~l~~ll~~a~~~I~--------~~----~~~eL~~~L~~~L~Ds--N~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ 940 (1972)
+.+..++..-...+. +. ...++++.+...+.+. +..+...++.+++.++..+|..|.+|+..+++.
T Consensus 659 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~ 738 (971)
T 2x1g_F 659 NMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF 738 (971)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHH
Confidence 444444442211111 11 1355666666666432 457899999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHHHH----HHHHhcC-----CCChhHHHHHHHHHHHHhcc
Q 000167 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVPYV----TTALTDA-----KLGAEGRKDLFDWLSKQLTG 1003 (1972)
Q Consensus 941 ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~--------~ll~~l----~~~L~~~-----~~~~~~R~~~l~~L~~~l~~ 1003 (1972)
++..+..... ..+...+..++...|-+ .++..+ ...|... ..+|+++.+.+.++...+..
T Consensus 739 l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~ 815 (971)
T 2x1g_F 739 IVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKK 815 (971)
T ss_dssp HHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHh
Confidence 9988876432 34677777887776643 222221 2222211 11588999999999998887
Q ss_pred CCC----CCC-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1004 LSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1004 ~~~----~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
.+. ++. +..++...+.+|.-.+.++.+++..++..++..
T Consensus 816 ~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 816 IPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred CcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 664 233 444445566677666666777887788776665
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.04 E-value=7.6e-09 Score=131.27 Aligned_cols=377 Identities=12% Similarity=0.084 Sum_probs=251.5
Q ss_pred cHHHHHhhhcCChHHHHHHHHHHHHHHHh-ccc-cc------hhHHHHHHHHhcCCCCccc-hHHHHHHHHHHHHHHHHH
Q 000167 603 PADTVGQLKSAVWKERLEAISSLRQQVEA-VQN-LD------QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAAT 673 (1972)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~-~~~-~~------~~~~~lv~~L~~~p~~~Ds-N~qV~~~~Le~l~~l~~~ 673 (1972)
-+.+++.|.+.+...|..|+..|..++.. ..+ .. ...+.++..| ++. +..|+..++.++..++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L------~~~~~~~v~~~a~~~L~~l~~~ 95 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFL------KRKENCTLQFESAWVLTNIASG 95 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHH------TCTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHH------CCCCCHHHHHHHHHHHHHHhcC
Confidence 36788899999999999999999998753 111 11 1234445444 333 778889999999887752
Q ss_pred cCCCchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh-------hHHHHHHHHhhhhCCChHHHHHHHHHHH
Q 000167 674 ATKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMV 743 (1972)
Q Consensus 674 ~~~~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~-------~~vl~~l~~~l~~~KnpKv~~e~l~~L~ 743 (1972)
........+ ..++|.|+..+.+ ..+|..|..+|..++..... .-+++.++..+....++.++..++..|.
T Consensus 96 ~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 96 NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 111111111 2467888887765 56899999999998864311 1235566666543578999999999999
Q ss_pred HHHHHhCCC--CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCC
Q 000167 744 SAVEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 821 (1972)
Q Consensus 744 ~~i~~fG~~--~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~ 821 (1972)
.+....+.. ..-+..+++.+..+ +.+.++.||..|..++..|-.... .....+ -+
T Consensus 176 ~l~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~------------~~~~~~----~~------ 232 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPN------------DKIQAV----ID------ 232 (450)
T ss_dssp HHHCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSH------------HHHHHH----HH------
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCc------------HHHHHH----HH------
Confidence 888543121 11135678888887 999999999999988877743211 000000 00
Q ss_pred CCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHH
Q 000167 822 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (1972)
Q Consensus 822 ~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~ 901 (1972)
..+.+.++..+.+.+|.+|..++..+..+..........-.-..+++.|.
T Consensus 233 ------------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 282 (450)
T 2jdq_A 233 ------------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL 282 (450)
T ss_dssp ------------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred ------------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHH
Confidence 00234677788889999999999999988753111000000024778888
Q ss_pred hccccchHHHHHHHHHHHHHHHHHcChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhh
Q 000167 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKM 972 (1972)
Q Consensus 902 ~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l--------~~l 972 (1972)
..+.+.+..++..|+.+|+.|+..-........ ..++|.++..+.+..+.||..|..+|..++..... ..+
T Consensus 283 ~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~ 362 (450)
T 2jdq_A 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362 (450)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 889999999999999999998753222233333 37899999999999999999999999999876321 237
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--------CCChhhhH------HHHHhhcCCCCHHHHHHHHHHHHH
Q 000167 973 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHLL------KPASIAMTDKSSDVRKAAEACIVE 1038 (1972)
Q Consensus 973 l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--------~~~~~~ll------~pl~~~L~D~~~dVR~aA~~~l~~ 1038 (1972)
+|.+...|.++ ++.+|..++..|...+..... ...+...+ ..+...+.+.+.+||+.|..++..
T Consensus 363 i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 363 IKPLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp HHHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77888888865 688998888777655542211 01111122 224555678888999988888776
Q ss_pred HH
Q 000167 1039 IL 1040 (1972)
Q Consensus 1039 l~ 1040 (1972)
+.
T Consensus 441 ~~ 442 (450)
T 2jdq_A 441 YF 442 (450)
T ss_dssp HH
T ss_pred HC
Confidence 65
No 28
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.02 E-value=6.2e-05 Score=105.17 Aligned_cols=354 Identities=12% Similarity=0.130 Sum_probs=200.7
Q ss_pred hcCChHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 000167 611 KSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 689 (1972)
Q Consensus 611 ~s~~Wk~Rl~a~e~L~~~v~~~~~-~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 689 (1972)
.+.+|+.|.+++-.++.+.++... .......++..+ +++.+.+..|...++.++..+.+.... ....+..+++.|
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l---~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~~l 534 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI---PRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLPLV 534 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG---GGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 346899999999999988776432 222334444443 356656777888777777666543211 012333344444
Q ss_pred HhhhcchhhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCC
Q 000167 690 SERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGL 768 (1972)
Q Consensus 690 veKlgd~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL 768 (1972)
+..+.+ |+|+..++..|..+++..+..-.+ +..++..+..+ +
T Consensus 535 ~~~l~~------------------------------------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~-l 577 (963)
T 2x19_B 535 LHALGN------------------------------------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV-L 577 (963)
T ss_dssp HHHTTC------------------------------------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH-H
T ss_pred HHHhCC------------------------------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-h
Confidence 444444 445555555555544443321111 23444444443 3
Q ss_pred CC--CchhHHHHHHHHHHHHHHhhC-hhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 000167 769 QS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1972)
Q Consensus 769 ~~--sn~~VR~aA~~ll~~Ly~~~G-~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~l 845 (1972)
.. -+..+|....++++.+...+| .....|+..+-+.+...++.-.... .
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~----------------------- 629 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-----P----------------------- 629 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-----S-----------------------
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-----C-----------------------
Confidence 32 346788888888888887776 5566677666555555554432100 0
Q ss_pred CcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCC-----------------CC----ChhhHHHHHHhcc
Q 000167 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-----------------PA----GTGELFGGLRGRL 904 (1972)
Q Consensus 846 prvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~-----------------~~----~~~eL~~~L~~~L 904 (1972)
.++. -+.+...++.+..++........ .. .+..+++.+...+
T Consensus 630 ---------~~~~--------~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 692 (963)
T 2x19_B 630 ---------NPSN--------KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL 692 (963)
T ss_dssp ---------CHHH--------HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CHHH--------HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 0000 01122333344444332111110 00 1233444444433
Q ss_pred cc--chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHH
Q 000167 905 YD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVP 974 (1972)
Q Consensus 905 ~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~--------~ll~ 974 (1972)
.. .+..+...++.+++.++..+|..|.+|+..+++.++..+..... ......+..++...+.+ .++.
T Consensus 693 ~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~ 769 (963)
T 2x19_B 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFL 769 (963)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHH
T ss_pred HhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 21 24578899999999999999999999999999988887754221 23445566666633221 2222
Q ss_pred HHHH----HHh-cCCCChhHHHHHHHHHHHHhccCCC----CCC-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 975 YVTT----ALT-DAKLGAEGRKDLFDWLSKQLTGLSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 975 ~l~~----~L~-~~~~~~~~R~~~l~~L~~~l~~~~~----~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
.+.. .+. +-...|+++...+.++...+...+. .+. +..++..+..++.+.+.+|-+++..++..+....+
T Consensus 770 ~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 770 LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 2222 222 2111589999999999988877654 233 45555567778899999999999999998887765
Q ss_pred -hhHHHHHhc
Q 000167 1045 -QETIEKNLK 1053 (1972)
Q Consensus 1045 -~~~~~~~l~ 1053 (1972)
...+..++.
T Consensus 850 ~~~~~~~~~~ 859 (963)
T 2x19_B 850 EVESVGKVVQ 859 (963)
T ss_dssp SSCHHHHHTT
T ss_pred ChHHHHHHHH
Confidence 334444443
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.99 E-value=6.6e-09 Score=135.40 Aligned_cols=378 Identities=13% Similarity=0.083 Sum_probs=252.0
Q ss_pred cHHHHHhhhcCChHHHHHHHHHHHHHHHhcccc--c-----hhHHHHHHHHhcCCCCccc-hHHHHHHHHHHHHHHHHHc
Q 000167 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--D-----QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAATA 674 (1972)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~--~-----~~~~~lv~~L~~~p~~~Ds-N~qV~~~~Le~l~~l~~~~ 674 (1972)
-+.+++.|.+.++..|..|+..|..++...... . .....++.+ +.+. +..|+..++.+|..++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~------L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF------MRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHT------TSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHH------hCCCCCHHHHHHHHHHHHHHhCCC
Confidence 367889999999999999999999887643111 1 112233333 3444 7888888888888776521
Q ss_pred CCCchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh--h-----HHHHHHHHhhhhCCChHHHHHHHHHHHH
Q 000167 675 TKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--G-----FIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1972)
Q Consensus 675 ~~~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~--~-----~vl~~l~~~l~~~KnpKv~~e~l~~L~~ 744 (1972)
+......+ ..+++.|+..+.+ ..++..|..+|..++..... . -+++.++..+ .+.++.++..++..|..
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 11111111 2356777776654 57899999999999864211 1 2355566654 45889999999999988
Q ss_pred HHHHhCCCC--CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCC
Q 000167 745 AVEDFGVSH--LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1972)
Q Consensus 745 ~i~~fG~~~--l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~ 822 (1972)
+....+... .-...+++.+..+ +.+.++.||..|..+|+.|..... .....+ ++ .
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~------------~~~~~~---~~-~------ 298 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQ------------EAIQAV---ID-V------ 298 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCH------------HHHHHH---HH-T------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCH------------HHHHHH---Hh-c------
Confidence 875431211 1134577778888 999999999999999988753211 111111 00 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh
Q 000167 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1972)
Q Consensus 823 ~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (1972)
.+.+.++..+.+.+|.+|..|+..|..++.........-.-..+++.|..
T Consensus 299 ------------------------------~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 299 ------------------------------RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp ------------------------------TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred ------------------------------CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 02356777788899999999999999887421100000001247788888
Q ss_pred ccccchHHHHHHHHHHHHHHHHHcChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hh
Q 000167 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DK 971 (1972)
Q Consensus 903 ~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l----------~~ 971 (1972)
.|.+.+..++..|+.+|+.|+..-......++ ..++|.++..|.+....||..|..+|..++...+. ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 99999999999999999998753222233333 35889999999999999999999999999876432 23
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--------CCChhh------hHHHHHhhcCCCCHHHHHHHHHHHH
Q 000167 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIV 1037 (1972)
Q Consensus 972 ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--------~~~~~~------ll~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1972)
+++.|...|.+. ++.+|..++..|...+..... ...... .+..|...+.|.+.+|++.|..++.
T Consensus 429 ~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 429 CIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp CHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677888888865 688998888887766543211 011111 2334666778999999999988887
Q ss_pred HHHHH
Q 000167 1038 EILRA 1042 (1972)
Q Consensus 1038 ~l~~~ 1042 (1972)
.+...
T Consensus 507 ~~~~~ 511 (530)
T 1wa5_B 507 TYFGE 511 (530)
T ss_dssp HHSSS
T ss_pred HHCCc
Confidence 66544
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.99 E-value=1.2e-06 Score=116.07 Aligned_cols=461 Identities=11% Similarity=0.046 Sum_probs=257.7
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
......+.+++..+.+++...|+-...++..++... +. .+-.++..+.+-|.|+++.||..|..+|+.+. .
T Consensus 66 ~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e----~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~ 136 (618)
T 1w63_A 66 YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-QD----VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----S 136 (618)
T ss_dssp CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HH----HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----C
T ss_pred CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----C
Confidence 345667788888888999999988777776655432 21 23457788999999999999999988887654 2
Q ss_pred hhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000167 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1972)
Q Consensus 479 ~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~ 558 (1972)
..+ ++.+
T Consensus 137 ~~~---~~~l---------------------------------------------------------------------- 143 (618)
T 1w63_A 137 SEM---CRDL---------------------------------------------------------------------- 143 (618)
T ss_dssp HHH---HHHH----------------------------------------------------------------------
T ss_pred HHH---HHHH----------------------------------------------------------------------
Confidence 211 1110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchh
Q 000167 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 638 (1972)
Q Consensus 559 ~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~ 638 (1972)
-+.+...|.|.+.-.|..|+..+..++....+.
T Consensus 144 --------------------------------------------~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~--- 176 (618)
T 1w63_A 144 --------------------------------------------AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL--- 176 (618)
T ss_dssp --------------------------------------------HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG---
T ss_pred --------------------------------------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH---
Confidence 022334455556666666666666666542221
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc-----------------chhhhHH
Q 000167 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA-----------------DIKTRAH 701 (1972)
Q Consensus 639 ~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg-----------------d~K~r~~ 701 (1972)
.+.++..+. ..+.|.|..|+..++.++..+....+.. ...+..++|.++..+. ++-.+..
T Consensus 177 v~~~~~~l~--~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 177 MEMFLPATK--NLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp GGGGGGGTT--TSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred HHHHHHHHH--HHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 111111111 2456777777777776666554321110 0122233444443322 2333444
Q ss_pred HHHHHHHHHhhcChh------HHHHHHHHhh--hhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCch
Q 000167 702 AMKCLTTFSEAVGPG------FIFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773 (1972)
Q Consensus 702 a~~~L~~l~e~~~~~------~vl~~l~~~l--~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~ 773 (1972)
+.++|..++... ++ -++.+++... .++.++-|..+++..+..+ +...--....+..+..+ +.+.++
T Consensus 254 il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~~~l~~~a~~~L~~~-L~~~d~ 327 (618)
T 1w63_A 254 ILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSESGLRVLAINILGRF-LLNNDK 327 (618)
T ss_dssp HHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHH-HTCSST
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHH-HhCCCC
Confidence 555555554321 11 1333333321 1233456777777666442 21100011244556666 788899
Q ss_pred hHHHHHHHHHHHHHHhhChhHHhhh-------hcccHHHH-HHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 000167 774 ATRNATIKLLGALHKFVGPDIKGFL-------ADVKPALL-SALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1972)
Q Consensus 774 ~VR~aA~~ll~~Ly~~~G~~l~~~L-------~~lkp~ll-~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~l 845 (1972)
+||..|...++.+....+..+..++ .+-.+.+. ..++- +-++..
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alel-L~~l~~--------------------------- 379 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMEL-SFALVN--------------------------- 379 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHH-HHHHCC---------------------------
T ss_pred chHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHH-HHHHcc---------------------------
Confidence 9999999999988765433232222 11111111 11111 111100
Q ss_pred CcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Q 000167 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1972)
Q Consensus 846 prvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~a 925 (1972)
...+ ..+..+++.-+.+.+-..|.+++..+..++. +..+. +...++.|.+.|.+.+..+...++..+..+...
T Consensus 380 -~~nv-~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~----k~~~~-~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~ 452 (618)
T 1w63_A 380 -GNNI-RGMMKELLYFLDSCEPEFKADCASGIFLAAE----KYAPS-KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN 452 (618)
T ss_dssp -SSST-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----SSCCC-HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH
T ss_pred -cccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HhCcc-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 0001 1234567666777788889999999988875 22233 467778888888777666766677777777654
Q ss_pred cChhhHhhhhhHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHhcC-------------chhhHHHHHHHHhcCCCChhHH
Q 000167 926 MGPAVEKSSKGVLSDILKCLGD--NKKHMRECTLTVLDAWLAAVH-------------LDKMVPYVTTALTDAKLGAEGR 990 (1972)
Q Consensus 926 lg~~~~~~~~~llp~ll~~L~D--~k~~Vr~Aa~~aL~~i~~~~~-------------l~~ll~~l~~~L~~~~~~~~~R 990 (1972)
- ++... ..+..++..+.+ ....+..++.-+++.+...+. ...+++.+...+++...++.+|
T Consensus 453 ~-p~l~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr 528 (618)
T 1w63_A 453 S-VEMHA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR 528 (618)
T ss_dssp S-CSTHH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred C-hhHHH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 2 23322 234455555443 223344567788888876541 2235555555554212268899
Q ss_pred HHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCCHHHHHHHHHHHHHH
Q 000167 991 KDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
..++..+.+++...+. ..+.+.. +-.+..|.+.|||..|...+.-+
T Consensus 529 ~~~lta~~Kl~~~~~~---~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 529 GYALTAIMKLSTRFTC---TVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHHHHHHHTTCSS---CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc---hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999888776542 2444555 44467899999999999866554
No 31
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.97 E-value=0.00033 Score=97.76 Aligned_cols=594 Identities=12% Similarity=0.079 Sum_probs=319.1
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhch----hhhhhhHHHH
Q 000167 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF----SGSSRFLLPV 370 (1972)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~llp~ 370 (1972)
+.+=..|++|-+.|..+-+.| ++-.+ +..++. +.+..|+..|+.++....+.--..+ ..+++..+-.
T Consensus 36 ~~~~~~r~~A~~~L~~~~~~p-----~~~~~---~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~ 107 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQVSP-----QAWHF---SWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFT 107 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHST-----THHHH---HHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCH-----HHHHH---HHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHH
Confidence 467788999999898876654 22222 223343 6678889999999988776432223 2333333333
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhc-CCChHhHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHhcC---------
Q 000167 371 LLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKN-----KVPLVRSLTLNWVTFCIETSS--------- 435 (1972)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~-~~~l~~il~~l~~~l~~-----Knp~vR~~~l~~L~~~l~~~~--------- 435 (1972)
++.......+.|+..+..++..++.+. ...-..++++|...+++ .++..+...+.+|..+.+...
T Consensus 108 ~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r 187 (963)
T 2x19_B 108 QITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRK 187 (963)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHH
Confidence 333333335889999999999999871 12345789999988865 266677888888887664320
Q ss_pred ---hhHHHHhhhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHhCchhH--HHhHhhc----c-----HHHHHHHHHH
Q 000167 436 ---KAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPL--ERSIEKL----D-----DVRRNKLSEM 499 (1972)
Q Consensus 436 ---~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~~l~~l~~~~ge~~~--~~~l~~L----d-----~~~~kkI~e~ 499 (1972)
+..+...++.+++.+..++.+... .++.++.+|+..+.. +|.... .++++.+ + ....+-+.+.
T Consensus 188 ~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i 266 (963)
T 2x19_B 188 GLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNA 266 (963)
T ss_dssp ----CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 112234567788888888876543 489999999977666 554211 2222211 0 0000011111
Q ss_pred HhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 500 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 579 (1972)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~ 579 (1972)
+.+ ..++
T Consensus 267 ~~~------------------------------------------~~~~------------------------------- 273 (963)
T 2x19_B 267 ISQ------------------------------------------PDAQ------------------------------- 273 (963)
T ss_dssp HTC------------------------------------------TTGG-------------------------------
T ss_pred Hcc------------------------------------------cccc-------------------------------
Confidence 100 0000
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHh----c-------cccchhHHHHHHHHhc
Q 000167 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA----V-------QNLDQSVEILVRLVCM 648 (1972)
Q Consensus 580 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~----~-------~~~~~~~~~lv~~L~~ 648 (1972)
...-....+-..+..++ +.+...+...+......-.+-+..+.+. . +......+.++.+. .
T Consensus 274 ------~~~~~~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~-~ 345 (963)
T 2x19_B 274 ------RYVNTLLKLIPLVLGLQ-EQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCT-G 345 (963)
T ss_dssp ------GCHHHHHHHHHHHHTTH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-T
T ss_pred ------cCHHHHHHHHHHHHhhH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHH-c
Confidence 00000001111111110 1111122222221111112222222111 0 00001122333322 2
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHcCCC-----------chhhHHHHHHHHHhhhcc------------h-----hhhH
Q 000167 649 LPGWSEKNVQVQQQVIEVINYLAATATKF-----------PKKCVVLCLLGISERVAD------------I-----KTRA 700 (1972)
Q Consensus 649 ~p~~~DsN~qV~~~~Le~l~~l~~~~~~~-----------~~~~~~~il~~LveKlgd------------~-----K~r~ 700 (1972)
.|+.-+.+..|...++++|..+++....+ -...+..+++.++.++.- . ..|.
T Consensus 346 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~ 425 (963)
T 2x19_B 346 IPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRV 425 (963)
T ss_dssp CSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHH
Confidence 34321122234667777877777632211 123444556666666521 0 1356
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHhh---h----hCCChHHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCc
Q 000167 701 HAMKCLTTFSEAVGPGFIFERLYKIM---K----DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSA 772 (1972)
Q Consensus 701 ~a~~~L~~l~e~~~~~~vl~~l~~~l---~----~~KnpKv~~e~l~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~sn 772 (1972)
.+.++|..++...+. .+++.++..+ . .+.+|+.+.+++.++..+.+......-+ +..+++.+.. +.+.+
T Consensus 426 ~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~~~ 502 (963)
T 2x19_B 426 DISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISISN 502 (963)
T ss_dssp HHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCCCS
T ss_pred HHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCCCc
Confidence 777888888877663 3344333322 2 4568999999998888877644322111 3445665553 55578
Q ss_pred hhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccc
Q 000167 773 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1972)
Q Consensus 773 ~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~ 852 (1972)
+.||..+..+++.+..+++..- .|+..+
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~-~~l~~v--------------------------------------------------- 530 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHP-VMINSV--------------------------------------------------- 530 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCH-HHHTTT---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCH-HHHHHH---------------------------------------------------
Confidence 9999999999998887664321 222221
Q ss_pred cccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc--cchHHHHHHHHHHHHHHHHHcC-hh
Q 000167 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG-PA 929 (1972)
Q Consensus 853 ~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~--DsN~~V~~~Al~~l~~La~alg-~~ 929 (1972)
.+.++..+.+ -.+|..|...+..++..+...+.|. +.+++..|...+. +.........+++++.++.+++ ..
T Consensus 531 --l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 531 --LPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp --HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred --HHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 2234444433 4567788888999998776667776 4888888877765 3455678888999999998887 67
Q ss_pred hHhhhhhHHHHHHHHhCC-----CcHHHH---HHHHHHHHHHHHhcCchhhHHHHHHHH--hcCCCChhHHHHHHHHHHH
Q 000167 930 VEKSSKGVLSDILKCLGD-----NKKHMR---ECTLTVLDAWLAAVHLDKMVPYVTTAL--TDAKLGAEGRKDLFDWLSK 999 (1972)
Q Consensus 930 ~~~~~~~llp~ll~~L~D-----~k~~Vr---~Aa~~aL~~i~~~~~l~~ll~~l~~~L--~~~~~~~~~R~~~l~~L~~ 999 (1972)
+.+|+..++++++..+.. ..+..+ .....||..++..++...- ..+.+.- ...+ .+..+..+......
T Consensus 606 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 683 (963)
T 2x19_B 606 ILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH-EDDHEGPELRKLP-VPQGPNPVVVVLQQ 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC-C----------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc-cccccccccccCC-CCCCCCchHHHHHH
Confidence 889999999999877642 233333 3556666677776652100 0000000 0000 00001111112221
Q ss_pred HhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000167 1000 QLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1972)
Q Consensus 1000 ~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1972)
+.+.+.-++.... .+.+|++.+..++..+...+|... .+++.
T Consensus 684 ----------~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~-~~~l~ 725 (963)
T 2x19_B 684 ----------VFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDF-APMVP 725 (963)
T ss_dssp ----------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTT-GGGHH
T ss_pred ----------HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhcccc-cccHH
Confidence 1223333333333 355899999999999999998653 45553
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.97 E-value=8.8e-08 Score=124.60 Aligned_cols=385 Identities=11% Similarity=0.044 Sum_probs=261.4
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhH--HhhhhhhHhhhcCCc-HHHHHHHHHHHHHHHHHhchhhhhhh-
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI--RELGPLFKKTVADSN-APVQDKALDALIAYLKAADADAGRYA- 91 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~--~~~~~~~~k~v~DsN-~~vqe~~leal~~~v~~~~~~~~~~~- 91 (1972)
|.+.|.+.+|..|..|...|.+.+....++.-..+ ....+.+.+++.+.+ ..+|..++.+|..+...........+
T Consensus 79 lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~ 158 (528)
T 4b8j_A 79 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID 158 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 56788899999999999999998765321211111 123455567777776 99999999999888764322111111
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h-----hhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCC-
Q 000167 92 KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V-----DVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAK- 162 (1972)
Q Consensus 92 ~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~~~--~-----~~v~~~L~~~~-~~KnpKv~~~~l~~l~~~l~~fG~~- 162 (1972)
...++.|+.-+-+..+.+++.|..++..++.... . ..++..|+..+ .+.++.++..++.+|..+.......
T Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~ 238 (528)
T 4b8j_A 159 HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238 (528)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 2477888876333688999999998888875321 1 13456677777 6788999999999998876643221
Q ss_pred ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhh
Q 000167 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (1972)
Q Consensus 163 ~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (1972)
..-...+++.|..++.+.|..||..|..++..+... .+ . . .+.+ +
T Consensus 239 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~---~-~--------~~~~---~------------------ 283 (528)
T 4b8j_A 239 FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TN---D-K--------IQAV---I------------------ 283 (528)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CH---H-H--------HHHH---H------------------
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CH---H-H--------HHHH---H------------------
Confidence 112356899999999999999999987776655421 11 0 0 0000 0
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC
Q 000167 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (1972)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~ 322 (1972)
. .+ + . +.+...+.+.+|..|..|+..|..++.+..-....
T Consensus 284 ---------~---~g-----------------------~----v-~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 284 ---------E---AG-----------------------V----C-PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp ---------H---TT-----------------------C----H-HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ---------H---cC-----------------------H----H-HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 00 0 0 23555567778899999999999887532100000
Q ss_pred --hHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHhhhchhhh-hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000167 323 --FTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1972)
Q Consensus 323 --y~~l~~~L~k~l~D~-N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~ 398 (1972)
-..+++.|...+.+. +..+...|+.+|+.|+.+-....... -..++|.|+..+.+....++..+..+|..+...+.
T Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~ 403 (528)
T 4b8j_A 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 403 (528)
T ss_dssp HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC
Confidence 023677888888877 99999999999999997533322222 23678999999999999999999999999887511
Q ss_pred CC----h--HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---------HHHHhhh--hHHHHHHHHhcCCChHH
Q 000167 399 LN----L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---------AVLKVHK--DYVPICMECLNDGTPEV 461 (1972)
Q Consensus 399 ~~----l--~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---------~l~~~l~--~l~p~l~k~l~Ds~~~V 461 (1972)
.. + ..+++.|...+.+.++.++..++..|..++...... .+...+. ..+..+..+.++.+++|
T Consensus 404 ~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v 483 (528)
T 4b8j_A 404 HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEI 483 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHH
Confidence 00 1 246788889999999999999999999988643220 1111222 23567888899999999
Q ss_pred HHHHHHHHHHHHHH
Q 000167 462 RDAAFSVLAAIAKS 475 (1972)
Q Consensus 462 R~aA~~~l~~l~~~ 475 (1972)
++.|...+..++..
T Consensus 484 ~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 484 YEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHCCC
Confidence 99999988766543
No 33
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.96 E-value=9.5e-05 Score=103.40 Aligned_cols=574 Identities=11% Similarity=0.083 Sum_probs=305.2
Q ss_pred cCChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcc---cCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Q 000167 296 ATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITD---VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (1972)
Q Consensus 296 s~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D---~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (1972)
+.+=..|.-|+..|+..+.. ..+.+.+...+-..|...+.. ....|+...+.++..|++.... .+..+++.
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~ 126 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG----EWPGAIEE 126 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC----C------H
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc----cccHHHHH
Confidence 34556788899888886632 345555665666666555542 2577888889999999987544 46778899
Q ss_pred HHHHhccC------cHHHHHHHHHHHHHHHHh----------------cCCChHhHHHHHHHHhhc-CCh-------HHH
Q 000167 371 LLEKLKEK------KPTVAESLTQTLQAMHKA----------------GCLNLVDVVEDVKTSVKN-KVP-------LVR 420 (1972)
Q Consensus 371 LL~klkdk------k~~V~~aa~~aL~al~~~----------------~~~~l~~il~~l~~~l~~-Knp-------~vR 420 (1972)
++..++.. ....++.+...|..+..- -...++.+++.+...+++ .++ .++
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~ 206 (971)
T 2x1g_F 127 VINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNM 206 (971)
T ss_dssp HHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence 99888664 566777777777776631 012344555555555542 222 788
Q ss_pred HHHHHHHHHHHHh--cChhHHHHhhhhHHHHHHHHh----------------cCCChHHHHHHHHHHHHHHHHhCchhHH
Q 000167 421 SLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECL----------------NDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1972)
Q Consensus 421 ~~~l~~L~~~l~~--~~~~~l~~~l~~l~p~l~k~l----------------~Ds~~~VR~aA~~~l~~l~~~~ge~~~~ 482 (1972)
..++..+..++.. .+.. ....+++.+.. | .+.++++|++|.+|+..+..........
T Consensus 207 ~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~ 281 (971)
T 2x1g_F 207 NRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP 281 (971)
T ss_dssp HHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred HHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence 8888888877773 3333 22455665655 3 2357899999999999998752211112
Q ss_pred HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000167 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (1972)
Q Consensus 483 ~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~ 562 (1972)
+++..+-+.-......+..... .
T Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~--------------------------------------~------------------- 304 (971)
T 2x1g_F 282 KTAFVLIKMFLDSLSEITKTEW--------------------------------------K------------------- 304 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS--------------------------------------S-------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHh--------------------------------------c-------------------
Confidence 2222221111110000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHh-----ccccch
Q 000167 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-----VQNLDQ 637 (1972)
Q Consensus 563 g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~-----~~~~~~ 637 (1972)
+|. +. ++.-..+. .+...+... |.. .+.+.+.. .+....
T Consensus 305 -------------------~d~-~~----~~~~~~l~-----~l~~~~~~~-~~~------~~~~~~~~~~~~~~~~l~~ 348 (971)
T 2x1g_F 305 -------------------REN-DN----EDIIVHIY-----MLFVSSVER-HST------LLLSGITSADPELSILVHR 348 (971)
T ss_dssp -------------------SSC-SC----SHHHHHHH-----HHHHHHHHH-THH------HHHHHHHTCCHHHHHHHHH
T ss_pred -------------------ccc-cc----hHHHHHHH-----HHHHHHHHH-HHH------HHHHHhccCcccccHHHHH
Confidence 000 00 01111110 111111110 000 00000000 000011
Q ss_pred hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC------------CchhhHHHHHHHHHhhhc----------c
Q 000167 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK------------FPKKCVVLCLLGISERVA----------D 695 (1972)
Q Consensus 638 ~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~------------~~~~~~~~il~~LveKlg----------d 695 (1972)
..+.++.+.. .||+...+..|...++++|..+++.... ..+..+..+++.++.++. |
T Consensus 349 ~l~~ll~~~~-~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d 427 (971)
T 2x1g_F 349 IVQEILHCTD-KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWS 427 (971)
T ss_dssp HHHHHHHHHH-CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSC
T ss_pred HHHHHHHHHc-CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccC
Confidence 2334444332 4665544556788888888887762210 113456677777777762 1
Q ss_pred -------hhhhHHHHHHHHHHHhhcChhHHHHHHHHhhh---h-----CCChHHHHHHHHHHHHHHHHhCCCC-CChhhH
Q 000167 696 -------IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D-----HKNPKVLSEGILWMVSAVEDFGVSH-LKLKDL 759 (1972)
Q Consensus 696 -------~K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~---~-----~KnpKv~~e~l~~L~~~i~~fG~~~-l~~k~l 759 (1972)
...|..+.++|..++...+ +.+++.++..+. . ..+|+.+.+++..+..+.+...... -.+..+
T Consensus 428 ~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l 506 (971)
T 2x1g_F 428 SDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 0246778889999888776 445555554331 2 2689999999988887765333211 124456
Q ss_pred HHHHHhcCC-CCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCC
Q 000167 760 IDFCKDTGL-QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1972)
Q Consensus 760 i~~l~~~gL-~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~ 838 (1972)
++.+..+ . .+.++.||..|..+++.+..+++... .|+..+-|.++..++
T Consensus 507 ~~~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~---------------------------- 556 (971)
T 2x1g_F 507 MRVLAEI-PYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGLN---------------------------- 556 (971)
T ss_dssp HHHHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHhc-CccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhC----------------------------
Confidence 6655543 3 24689999999999999998887543 344444444444431
Q ss_pred CCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc--chHHHHHHHH
Q 000167 839 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATL 916 (1972)
Q Consensus 839 ~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D--sN~~V~~~Al 916 (1972)
.+++..|...+..+++.+...+.|. +.+++..|...+.. .........+
T Consensus 557 ----------------------------~~v~~~A~~al~~l~~~~~~~l~p~-~~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 557 ----------------------------SSMSAQATLGLKELCRDCQLQLKPY-ADPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp ----------------------------SSCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 1234455556666666544444444 36777777776654 3456778889
Q ss_pred HHHHHHHHHcC-hhhHhhhhhHHHHHHHHhC----CC--cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhH
Q 000167 917 ITLGAVASAMG-PAVEKSSKGVLSDILKCLG----DN--KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG 989 (1972)
Q Consensus 917 ~~l~~La~alg-~~~~~~~~~llp~ll~~L~----D~--k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~ 989 (1972)
++++.++.+++ ..+.+|+..++++++..+. .. ...-+.....+++.+.. +...+.... .. .
T Consensus 608 ~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~----------~~~~l~~~~-~~-~ 675 (971)
T 2x1g_F 608 FSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST----------LFSSLNTDV-DE-Q 675 (971)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH----------HHHHHTC-------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------HHhhcCCCc-Cc-c
Confidence 99999998876 5577888888888887654 11 22233333444443321 112222110 00 0
Q ss_pred HHHH--HHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000167 990 RKDL--FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1972)
Q Consensus 990 R~~~--l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1972)
+.+. -.-+..++ ..+.+.+.-++.... .+.+|.+.+..++..++..+|.+ +.+++
T Consensus 676 ~~~~~~~~~~~~~~------~~i~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~-~~p~l 732 (971)
T 2x1g_F 676 ATDQPIVQPVLLVM------QRTMPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSS-FQPML 732 (971)
T ss_dssp --------CCHHHH------HTTHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred cccccCCCchHHHH------HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhh-ccccH
Confidence 0000 00000001 123444444444332 46789999999999999988875 56664
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.95 E-value=1.6e-08 Score=131.51 Aligned_cols=379 Identities=12% Similarity=0.078 Sum_probs=253.7
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhcc-cc-c-----hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NL-D-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~-~~-~-----~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
+.+++.|.+.++..|..|+..|..++.... +. . ...+.++.+|. .+.+..++..++.+|..++...+.
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-----REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 678899999999999999999998876532 11 1 12345565553 122378888899999888763211
Q ss_pred CchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh--hH-----HHHHHHHhhhhCCChHHHHHHHHHHHHHH
Q 000167 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1972)
Q Consensus 677 ~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~--~~-----vl~~l~~~l~~~KnpKv~~e~l~~L~~~i 746 (1972)
.....+ ..+++.|+.-+.+ ..++..|..+|..++..... .. ++..++..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 1367888887765 46899999999999864221 11 35566666546789999999999999887
Q ss_pred HHhCCCC-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCC
Q 000167 747 EDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 825 (1972)
Q Consensus 747 ~~fG~~~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~ 825 (1972)
....... .-...+++.+..+ +.+.++.||..|..+++.|-....... +.+- .
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~------------~~~~----~---------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKI------------QAVI----E---------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHH------------HHHH----H----------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHH------------HHHH----H----------
Confidence 6432111 1135678888888 999999999999998887743211101 0000 0
Q ss_pred CccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc
Q 000167 826 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1972)
Q Consensus 826 r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~ 905 (1972)
..+.+.++..+.+.+|.+|..|+..|..++.........-.-..++..|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 002356778888899999999999999887521100000000346778888888
Q ss_pred cc-hHHHHHHHHHHHHHHHHHcChhhHhhh-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHH
Q 000167 906 DS-NKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPY 975 (1972)
Q Consensus 906 Ds-N~~V~~~Al~~l~~La~alg~~~~~~~-~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l--------~~ll~~ 975 (1972)
+. +..++..|+.+|+.|+..-........ ..++|.++..|.+....++..|..+|..++...+. ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 87 899999999999999863222222222 36789999999999999999999999999887431 246778
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhccCCC--------CCChhh------hHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 976 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 976 l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--------~~~~~~------ll~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
+...|.+. ++.++..++..|...+..... ...+.. .+..+.....+.+.+|++.|..++..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88888875 688888888777766542211 001111 13346667789999999999998887654
Q ss_pred H
Q 000167 1042 A 1042 (1972)
Q Consensus 1042 ~ 1042 (1972)
.
T Consensus 497 ~ 497 (528)
T 4b8j_A 497 D 497 (528)
T ss_dssp -
T ss_pred C
Confidence 3
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.95 E-value=1.8e-06 Score=114.38 Aligned_cols=341 Identities=11% Similarity=0.091 Sum_probs=183.2
Q ss_pred HHHHHHHHhhccCCC--CchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC-CCh
Q 000167 31 ANIDLAALCDSITDP--KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRP 107 (1972)
Q Consensus 31 ayeel~~~~~~~~d~--~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~-~k~ 107 (1972)
++.++++.+++.... .......-..-+++-+.+.+....-.++.-+..+.-. |.+....+.+++ |++. .+-
T Consensus 11 ~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~-G~d~~~~~~~vi-----k~~~s~~~ 84 (618)
T 1w63_A 11 RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHML-GYPAHFGQLECL-----KLIASQKF 84 (618)
T ss_dssp CHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHT-TCCCGGGHHHHH-----HHHHSSSH
T ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHc-CCCCcchHHHHH-----HHHcCCch
Confidence 356777777653210 0011122233445556665555555555555544333 333333333444 3333 466
Q ss_pred hHHHHHHHHHHHHHhhhhhh---hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChhH
Q 000167 108 KTVEKAQAVFMLWVELEAVD---VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNV 184 (1972)
Q Consensus 108 ~~k~~a~~~ll~~~E~~~~~---~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~V 184 (1972)
..|..+--.+..|.+. +++ -++..|.+.+.++||-++..++.+|..+ |...+ ...+++.+.++|.|+++.|
T Consensus 85 ~~Krl~Yl~~~~~~~~-~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i----~~~~~-~~~l~~~l~~~L~~~~~~V 158 (618)
T 1w63_A 85 TDKRIGYLGAMLLLDE-RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCM----GSSEM-CRDLAGEVEKLLKTSNSYL 158 (618)
T ss_dssp HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHH----CCHHH-HHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhc----CCHHH-HHHHHHHHHHHHcCCCHHH
Confidence 6777665455555532 344 3567888899999999999999998765 32111 3567899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCC
Q 000167 185 RASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTA 264 (1972)
Q Consensus 185 R~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (1972)
|..|..++..+|+...+ .+.. +++.+
T Consensus 159 Rk~A~~al~~l~~~~p~-~v~~-~~~~l---------------------------------------------------- 184 (618)
T 1w63_A 159 RKKAALCAVHVIRKVPE-LMEM-FLPAT---------------------------------------------------- 184 (618)
T ss_dssp HHHHHHHHHHHHHHCGG-GGGG-GGGGT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHChH-HHHH-HHHHH----------------------------------------------------
Confidence 99999999999986532 2211 11100
Q ss_pred CCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcC-CCC---CCCChHHHHHHHHHHhc-----
Q 000167 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRI---APGDFTEVCRTLKKLIT----- 335 (1972)
Q Consensus 265 ~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki---~~~~y~~l~~~L~k~l~----- 335 (1972)
.+.+.+.+-..+..|+..|..+... |.. ...-...++..|...+.
T Consensus 185 --------------------------~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~ 238 (618)
T 1w63_A 185 --------------------------KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSP 238 (618)
T ss_dssp --------------------------TTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCT
T ss_pred --------------------------HHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 0111222222233333333333210 100 00011123333333211
Q ss_pred ------ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHh---ccCcHHHHHHHHHHHHHHHHhcCCCh---Hh
Q 000167 336 ------DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL---KEKKPTVAESLTQTLQAMHKAGCLNL---VD 403 (1972)
Q Consensus 336 ------D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl---kdkk~~V~~aa~~aL~al~~~~~~~l---~~ 403 (1972)
..+.-+....+++++.++..- +........+++.++... +.....|+ .+|+.+++.- .... ..
T Consensus 239 ~~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~---~ea~~~i~~l-~~~~~l~~~ 313 (618)
T 1w63_A 239 EHDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAIL---YETVLTIMDI-KSESGLRVL 313 (618)
T ss_dssp TTCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHH---HHHHHHHHHS-CCCHHHHHH
T ss_pred cccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhc-CCCHHHHHH
Confidence 124444444556666555321 111112223444444432 12222333 3344444432 1111 13
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 404 il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
.++.+...+.++++.+|..++.+|..+....+. .+....+.+..|+.|.+..||..|.+++..+.
T Consensus 314 a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~ 378 (618)
T 1w63_A 314 AINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALV 378 (618)
T ss_dssp HHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 456666778889999999999999988765432 23556778899999999999999888776543
No 36
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.89 E-value=0.00016 Score=101.00 Aligned_cols=328 Identities=9% Similarity=0.075 Sum_probs=184.5
Q ss_pred CChHHHHHHHHHHHHHHHhcc----ccc------hhHHHHHHHHhcCCCCccc---hHHHHHHHHHHHHHHHHHcCCCch
Q 000167 613 AVWKERLEAISSLRQQVEAVQ----NLD------QSVEILVRLVCMLPGWSEK---NVQVQQQVIEVINYLAATATKFPK 679 (1972)
Q Consensus 613 ~~Wk~Rl~a~e~L~~~v~~~~----~~~------~~~~~lv~~L~~~p~~~Ds---N~qV~~~~Le~l~~l~~~~~~~~~ 679 (1972)
.+|+.|.+|+..++.+..+.. ... ...+.+...+ .|.+.|. +..|...++.++..+.+. +.+
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v--~p~l~~~~~~~p~vr~~a~~~lg~~~~~---~~~ 491 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI--APDLTSNNIPHIILRVDAIKYIYTFRNQ---LTK 491 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT--HHHHHCSSCSCHHHHHHHHHHHHHTGGG---SCH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh--HHHhcCCCCCCceehHHHHHHHHHHHhh---CCH
Confidence 479999999999998865421 010 1112222222 1345555 889999999998877764 345
Q ss_pred hhHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhcC----------h-------hHHHHHHHHhhhhCC---ChH--HH
Q 000167 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG----------P-------GFIFERLYKIMKDHK---NPK--VL 735 (1972)
Q Consensus 680 ~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~----------~-------~~vl~~l~~~l~~~K---npK--v~ 735 (1972)
..+..+++.++..+.|. .++..|..+|..+++... . ..+++.++..+ +.. .++ ..
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll-~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI-LKHGSSPEKLAEN 570 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH-HTTCCCHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH-HhccCCCCccccc
Confidence 67888999999988884 578999999999988421 1 22444444443 221 123 34
Q ss_pred HHHHHHHHHHHHHhCCCCCC-hhhHHH----HHHhcCCCCCchhHHHHHHHHHHHHHHhhChh-HHhhhhcccHHHHHHH
Q 000167 736 SEGILWMVSAVEDFGVSHLK-LKDLID----FCKDTGLQSSAAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSAL 809 (1972)
Q Consensus 736 ~e~l~~L~~~i~~fG~~~l~-~k~li~----~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~-l~~~L~~lkp~ll~~L 809 (1972)
...+..|..++..++....+ ...+++ .+....-+..++..+....++++.+.+..|+. +..+.+.+-|.+...+
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL 650 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 56677788888777654332 223333 33332013457788888999999998887754 3344455555555544
Q ss_pred HHHHhcCCCCCCCCCC---CccccccccCCCCCCCCCCCCcccccccccHHHH--HhcCCCCHHHHHHHHHHHHHHHHHc
Q 000167 810 DAEYEKNPFEGTVVPK---KTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--KSLESPDWKVRLESIEAVNKILEEA 884 (1972)
Q Consensus 810 e~efek~~~~~~~~p~---r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll--~~l~d~~Wk~R~eale~l~~ll~~a 884 (1972)
+....... +.... .-.... +.++. ....+-+-++ ..+....|- -..+..+...+...
T Consensus 651 ~~~~~~~~---~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~~~~~~ 712 (960)
T 1wa5_C 651 SEDIQEFI---PYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPNVWELKGNI--PAVTRLLKSFIKTD 712 (960)
T ss_dssp HTTCTTTH---HHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGGGGCCTTTH--HHHHHHHHHHHHHH
T ss_pred HhhhHhhH---HHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHHHhcCCCCc--hhHHHHHHHHHHhC
Confidence 32110000 00000 000000 00000 0111112222 222222221 13444555555433
Q ss_pred cccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChh-hHhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHH
Q 000167 885 NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDA 962 (1972)
Q Consensus 885 ~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~-~~~~~~~llp~ll~~L~D~k-~~Vr~Aa~~aL~~ 962 (1972)
...+.. ...++..+...+.+.+. ...|+.+++.++..++.. |.+|+..+++.++..+...+ ..++.+....+..
T Consensus 713 ~~~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~ 788 (960)
T 1wa5_C 713 SSIFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGL 788 (960)
T ss_dssp GGGCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHH
T ss_pred hHHHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHH
Confidence 223332 24466666666655432 378899999999999999 99999999999999987664 4455454444444
Q ss_pred HHHhcC
Q 000167 963 WLAAVH 968 (1972)
Q Consensus 963 i~~~~~ 968 (1972)
++-..+
T Consensus 789 ~~~~~~ 794 (960)
T 1wa5_C 789 ISNKLG 794 (960)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 443334
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.87 E-value=1.2e-06 Score=119.10 Aligned_cols=492 Identities=12% Similarity=0.071 Sum_probs=286.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
+|.++..++.....++.++...+...-.. +. ....++.|...|.+.++.+|..++..|..+.............+.++
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~-~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA-EL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH-HH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 67778888887777777766666544221 11 14578888888899999999999999887654321111111124678
Q ss_pred HHHHHHhcCC-ChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCC
Q 000167 448 PICMECLNDG-TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSV 526 (1972)
Q Consensus 448 p~l~k~l~Ds-~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~ 526 (1972)
+.|+..|.+. ++++|..|..+|..+... .. . +..|.+ . +
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~---~~----------~-~~~i~~---~-g---------------------- 234 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHH---RE----------G-LLAIFK---S-G---------------------- 234 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTS---HH----------H-HHHHHH---T-T----------------------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCC---ch----------h-HHHHHH---c-C----------------------
Confidence 8899888644 999999999998765432 10 0 111111 0 0
Q ss_pred CCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHH
Q 000167 527 EASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADT 606 (1972)
Q Consensus 527 ~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l 606 (1972)
.-+.+
T Consensus 235 ---------------------------------------------------------------------------~I~~L 239 (780)
T 2z6g_A 235 ---------------------------------------------------------------------------GIPAL 239 (780)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------CHHHH
Confidence 00234
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchh
Q 000167 607 VGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1972)
Q Consensus 607 ~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (1972)
+..|.+.+...|..|+..|..+........ .....++.+ +++.|..|...+++++..++..+......
T Consensus 240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l------L~~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL------LNKTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG------GGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH------HhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 556666677778888888887765532211 112334443 34567778888888877665321100000
Q ss_pred -hHHHHHHHHHhhhcc---hhhhHHHHHHHHHHHhhcCh--h----HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhC
Q 000167 681 -CVVLCLLGISERVAD---IKTRAHAMKCLTTFSEAVGP--G----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (1972)
Q Consensus 681 -~~~~il~~LveKlgd---~K~r~~a~~~L~~l~e~~~~--~----~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG 750 (1972)
.-...++.|+.-+.+ ...+..+..+|..++..... . -++..++..+ .+.++.++..++..|..+.....
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhccch
Confidence 001234555554443 23456667777777743211 1 1245555554 56688999999988888876443
Q ss_pred CCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000167 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1972)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~ 830 (1972)
. ......+++.+..+ +.+.++.||..|..+|+.|-... +..+..+ -+..
T Consensus 393 ~-~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~~~~-~~~~~~i---------------~~~g------------- 441 (780)
T 2z6g_A 393 K-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCNN-YKNKMMV---------------CQVG------------- 441 (780)
T ss_dssp T-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSC-HHHHHHH---------------HTTT-------------
T ss_pred h-hhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCC-HHHHHHH---------------HHCC-------------
Confidence 2 22346788888888 99999999999999998774321 1111111 0000
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHHhcCC-CCH-HHHHHHHHHHHHHHHHcc------ccCCCCChhhHHHHHHh
Q 000167 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDW-KVRLESIEAVNKILEEAN------KRIQPAGTGELFGGLRG 902 (1972)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d-~~W-k~R~eale~l~~ll~~a~------~~I~~~~~~eL~~~L~~ 902 (1972)
..+.|+..+.+ .+| .+|..|+..|..|..... ..+.. ...+..|..
T Consensus 442 -----------------------~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~---~~~l~~L~~ 495 (780)
T 2z6g_A 442 -----------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL---HYGLPVVVK 495 (780)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH---TTCHHHHHH
T ss_pred -----------------------CHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH---cCCHHHHHH
Confidence 01223333332 233 677788877776642100 00000 234677777
Q ss_pred ccccchH-HHHHHHHHHHHHHHHHcChhhHhhh--hhHHHHHHHHhCCCc----------------------HHHHHHHH
Q 000167 903 RLYDSNK-NLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNK----------------------KHMRECTL 957 (1972)
Q Consensus 903 ~L~DsN~-~V~~~Al~~l~~La~alg~~~~~~~--~~llp~ll~~L~D~k----------------------~~Vr~Aa~ 957 (1972)
.|.+.+. .++..|+.+|+.|+. +......+ ..++|.++..|.+.. ..++.++.
T Consensus 496 lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~ 573 (780)
T 2z6g_A 496 LLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT 573 (780)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHH
Confidence 8876654 899999999999974 33222221 246788887775532 34666777
Q ss_pred HHHHHHHHh------cCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC-CCh--hhhHHHHHhhcCCCCHHH
Q 000167 958 TVLDAWLAA------VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDV 1028 (1972)
Q Consensus 958 ~aL~~i~~~------~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L~D~~~dV 1028 (1972)
.||..+... +.-..+++.|...|.+. ++.++..++..|...... +.. ..+ ...+.+|...+.|.+.+|
T Consensus 574 ~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~V 650 (780)
T 2z6g_A 574 GALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGV 650 (780)
T ss_dssp HHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 777765421 00133577888888876 688888888777655421 110 011 124566888899999999
Q ss_pred HHHHHHHHHHHHHHcCh
Q 000167 1029 RKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 1029 R~aA~~~l~~l~~~~G~ 1045 (1972)
|.+|..+|..+...-+.
T Consensus 651 r~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 651 ATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHcCChH
Confidence 99999999988876553
No 38
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.85 E-value=2.9e-06 Score=115.39 Aligned_cols=518 Identities=13% Similarity=0.069 Sum_probs=297.0
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhh-hhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~l 367 (1972)
.+...+.+.+...|..++..++.+.. ..+ -...++.|.+.+.+.+..|+..|+.+|..|+..-.....- ....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~-~~i----~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDD-AEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhH-HHH----HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 57777888888888888887765421 111 1456777888888889999999999999998743221111 12468
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000167 368 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1972)
Q Consensus 368 lp~LL~klkdk-k~~V~~aa~~aL~al~~~~----~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (1972)
++.|+..+++. ...++..+..+|..+.... ...-..+++.|...+++.++.+|..++..|..+........ ...
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHH
Confidence 99999998754 7889999989998865320 00012467888899999999999999999999876543221 111
Q ss_pred -hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCC
Q 000167 443 -HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (1972)
Q Consensus 443 -l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (1972)
-...+|.++++|.+.+..||..+..++..+.. +.......+-.-+. ...+...+...
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~------------------ 330 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY------------------ 330 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC------------------
Confidence 14688999999999999999999999986652 32211111100000 00111111000
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhcc
Q 000167 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (1972)
Q Consensus 522 s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l 601 (1972)
+.+.....+
T Consensus 331 --------------------------------------------------------------------~~~~~~~~a--- 339 (780)
T 2z6g_A 331 --------------------------------------------------------------------TYEKLLWTT--- 339 (780)
T ss_dssp --------------------------------------------------------------------CCHHHHHHH---
T ss_pred --------------------------------------------------------------------CHHHHHHHH---
Confidence 000000000
Q ss_pred CcHHHHHhhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchh
Q 000167 602 IPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1972)
Q Consensus 602 l~~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~ 680 (1972)
..++..|.. ...+.. ++.. .....++.+ +.+.+..+...++.++..++.......
T Consensus 340 --~~aL~~Ls~~~~~~~~---------i~~~-----g~l~~Ll~l------L~~~~~~~~~~a~~~L~~L~~~~~~~~-- 395 (780)
T 2z6g_A 340 --SRVLKVLSVCSSNKPA---------IVEA-----GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE-- 395 (780)
T ss_dssp --HHHHHHHHTSTTHHHH---------HHHT-----THHHHHGGG------TTCSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred --HHHHHHhhcChHHHHH---------HHHh-----chHHHHHHH------HcCCchHHHHHHHHHHHHHhccchhhh--
Confidence 001111111 111100 0000 012223322 345566777888888888876443321
Q ss_pred hHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh-------hHHHHHHHHhhhhCCC-hHHHHHHHHHHHHHHHHhC
Q 000167 681 CVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKN-PKVLSEGILWMVSAVEDFG 750 (1972)
Q Consensus 681 ~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~-------~~vl~~l~~~l~~~Kn-pKv~~e~l~~L~~~i~~fG 750 (1972)
....+++.|+..+.+ ..++..|..+|..++..... .-.+..++..+....+ ..++..++..|..+....+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 234577888877654 56788888888887653211 1245666666544333 4889888888887642111
Q ss_pred CC-----CCChhhHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHhhChhHHhhh--hcccHHHHHHHHHHHhcCCCCCCC
Q 000167 751 VS-----HLKLKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTV 822 (1972)
Q Consensus 751 ~~-----~l~~k~li~~l~~~gL~~sn~-~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~efek~~~~~~~ 822 (1972)
.. .+-....++.+..+ |.+.+. .||.+|..+|+.|.. ++.....+ .++-|.+.+.+......++.+..-
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 10 00001235556666 777775 999999999999864 44333333 345677777776543222110000
Q ss_pred CCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHc-c-ccCCCCChhhHHHHH
Q 000167 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-N-KRIQPAGTGELFGGL 900 (1972)
Q Consensus 823 ~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a-~-~~I~~~~~~eL~~~L 900 (1972)
+ .+... +.. +.....++..++..|..+.... + ..+.. ...+..|
T Consensus 553 a----------------l~nq~---------~~~------~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~~~i~~L 598 (780)
T 2z6g_A 553 G----------------GTQQQ---------FVE------GVRMEEIVEACTGALHILARDIHNRIVIRG---LNTIPLF 598 (780)
T ss_dssp ---------------------C---------CST------TCCHHHHHHHHHHHHHHHTTSHHHHHHHHH---TCCHHHH
T ss_pred c----------------cccch---------hhc------ccChHHHHHHHHHHHHHHhcChhhHHHHHH---CCcHHHH
Confidence 0 00000 000 0011234555566665543210 0 00111 3357788
Q ss_pred HhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh--HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000167 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 901 ~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
...|.+.+..|+..|+.++..++. .+.....+.. .++.++..+.+.+..||..|..+|..+....+
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 889999999999999999988862 2333333333 67888999999999999999999999887654
No 39
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.64 E-value=7.8e-05 Score=99.62 Aligned_cols=610 Identities=14% Similarity=0.111 Sum_probs=361.4
Q ss_pred ccCChHHHHHHHHHHHHHhcC----CCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhchhhh-hhhHH
Q 000167 295 KATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLL 368 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~----~ki~~~~y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ll 368 (1972)
.+.+-..|..|+..|.=|+.. .+|... +-+..|.+.+.+ .|.-++..|++++..||++=+..-... -..=+
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga~~i~~~---~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~ 94 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGAELLYKD---HCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGV 94 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHT---THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred cccCHHHHHHHHhhceeeeccccchHHHHhC---chHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCH
Confidence 455666778888888776631 122221 124566667774 889999999999999998754332222 22335
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh--cC-----------------CChHhHHHHHHHHhhcCC--hHHHHHHHHHH
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKA--GC-----------------LNLVDVVEDVKTSVKNKV--PLVRSLTLNWV 427 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~--~~-----------------~~l~~il~~l~~~l~~Kn--p~vR~~~l~~L 427 (1972)
|.++..+.-+...+..++..++..++.. +. ..++.++..++..+.+++ ...|-.+++.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 174 (810)
T 3now_A 95 PWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELI 174 (810)
T ss_dssp HHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHH
Confidence 6677777778888888888888888865 11 113445666667777655 79999999999
Q ss_pred HHHHHhcChh---HH-H-HhhhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHHHHHhCchhH-HHhHhhccHHHH
Q 000167 428 TFCIETSSKA---AV-L-KVHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRR 493 (1972)
Q Consensus 428 ~~~l~~~~~~---~l-~-~~l~~l~p~l~k~l~Ds--------~~~VR~aA~~~l~~l~~~~ge~~~-~~~l~~Ld~~~~ 493 (1972)
.+.+.+.... .+ . ..++.++.+... +.+. .+++|..+.-|+..++.-.+.+.- +.|-
T Consensus 175 ~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~-~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-------- 245 (810)
T 3now_A 175 TRNVHYTALEWAERLVEIRGLCRLLDVCSE-LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFT-------- 245 (810)
T ss_dssp HHHTTCTTTTHHHHHHHTTHHHHHHHHHTC-CSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHH--------
T ss_pred HHhCCccccccccchhhHhhHHHHHHHHhc-CccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHH--------
Confidence 9888554311 11 1 233444433222 2333 678999999999999988884321 1222
Q ss_pred HHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCccccccc-ccccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK-SAASM-LSGKRPVSAAPASKKGGPVKPSAKKDGSGK 571 (1972)
Q Consensus 494 kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~-~~~s~-~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~ 571 (1972)
+.+.+++...-. .+. ....++. ++.+. ++ |
T Consensus 246 ~~~~~~~~~~~~-----~~~----------------~~~~~~a~~alt~i~~-------------------g-------- 277 (810)
T 3now_A 246 DQIDEYIKDKLL-----APD----------------MESKVRVTVAITALLN-------------------G-------- 277 (810)
T ss_dssp HHHHHHHHHHHS-----SCC----------------HHHHHHHHHHHHHHHS-------------------S--------
T ss_pred HHHHHHHHHHhc-----cCC----------------hHhHHHHHHHHHHHhc-------------------C--------
Confidence 223333321000 000 0000000 00000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHh-hccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCC
Q 000167 572 QETSKLTEAPEDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP 650 (1972)
Q Consensus 572 ~~~s~~~~~~~~~~~~~~s~ee~e~~~-~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p 650 (1972)
..+...... .+-+-+.++..+.|.+-..+..|++.|..........+...+.-+.+|..
T Consensus 278 ------------------~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~-- 337 (810)
T 3now_A 278 ------------------PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKR-- 337 (810)
T ss_dssp ------------------SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHH--
T ss_pred ------------------CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHH--
Confidence 011111111 11122677889999999999999999987644321111011111133321
Q ss_pred CCccchHHHHHHHHHHHHHHHHHc------CCCchhhHHHHHHHHHhhhcch----hhhHHHHHHHHHHHhhcC------
Q 000167 651 GWSEKNVQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVG------ 714 (1972)
Q Consensus 651 ~~~DsN~qV~~~~Le~l~~l~~~~------~~~~~~~~~~il~~LveKlgd~----K~r~~a~~~L~~l~e~~~------ 714 (1972)
.++..+..+...++-+|..+.... ..|....+..+++.++.-+.+. ..+..|.++|..++....
T Consensus 338 Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv 417 (810)
T 3now_A 338 LYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLI 417 (810)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 234455566677777777776321 2244344566677777666544 478888888888864321
Q ss_pred -hhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCC---------------CCC----------hh---------hH
Q 000167 715 -PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---------------HLK----------LK---------DL 759 (1972)
Q Consensus 715 -~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~---------------~l~----------~k---------~l 759 (1972)
-.-+++.|+..+ ++.++.++.+++..|.++...+-.. .++ ++ ..
T Consensus 418 ~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGa 496 (810)
T 3now_A 418 EDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496 (810)
T ss_dssp HCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTH
T ss_pred HccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcC
Confidence 122456666665 5678999999999999998743100 000 11 24
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCC
Q 000167 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1972)
Q Consensus 760 i~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~ 839 (1972)
++.+..+ +.+.++.||..|..++..|-. .+..+..+ -+ .+
T Consensus 497 Vp~LV~L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~V-----------v~-------~G------------------- 536 (810)
T 3now_A 497 TTALCAL-AKTESHNSQELIARVLNAVCG--LKELRGKV-----------VQ-------EG------------------- 536 (810)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHH-----------HH-------TT-------------------
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHH-----------HH-------CC-------------------
Confidence 5556666 888889999999988877742 11222211 00 00
Q ss_pred CCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC--hhhHHHHHHhccc-cchHHHHHHHH
Q 000167 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG--TGELFGGLRGRLY-DSNKNLVMATL 916 (1972)
Q Consensus 840 ~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~--~~eL~~~L~~~L~-DsN~~V~~~Al 916 (1972)
..+.|+..+.+.....|..|...|..++...++.+.... ..+.++.|...|. |.+......|+
T Consensus 537 --------------aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl 602 (810)
T 3now_A 537 --------------GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602 (810)
T ss_dssp --------------HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH
T ss_pred --------------CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH
Confidence 112355555556667889999999998875433321111 1346778888775 33434456788
Q ss_pred HHHHHHHHHcChhhHhhhh-hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----c--hhhHHHHHHHHhcCCCChh
Q 000167 917 ITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----L--DKMVPYVTTALTDAKLGAE 988 (1972)
Q Consensus 917 ~~l~~La~alg~~~~~~~~-~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-----l--~~ll~~l~~~L~~~~~~~~ 988 (1972)
.+|..|+..-...-...++ ..+|.++..+.+.+..|+.+|..++..++..-. . ...++.+...+.+. +..
T Consensus 603 ~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~--d~~ 680 (810)
T 3now_A 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE--DEE 680 (810)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--SHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--CHH
Confidence 8888887542111112222 478999999999999999999999998874311 1 24567777777765 577
Q ss_pred HHHHHHHHHHHHhccCCC-CCCh---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 989 GRKDLFDWLSKQLTGLSG-FPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~-~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
+|.+++..|...-...+. ...+ ...+.+|+..|.+.+.+||+.|..++..+..
T Consensus 681 vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 681 TATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 888887666544332221 0111 2466778899999999999999999988765
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.64 E-value=1.7e-05 Score=105.69 Aligned_cols=487 Identities=13% Similarity=0.066 Sum_probs=282.9
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--C
Q 000167 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--L 399 (1972)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~--~--~ 399 (1972)
.++.|...+.+.+..++..|+.+|+.|+..-.....-. ...+++.|+..+.+. ...++..+..+|..+.... . .
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 35566667778899999999999999997553221111 236789999999765 7888888888888765320 0 0
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
.-..+++.+...+++.++.++..++..|..+....... .... -...+|.|+++|.+.++.++..+..+|+.+.. +.
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~ 171 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GN 171 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TC
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--cC
Confidence 00146788889999999999999999999987654322 1112 25689999999999999999999999987764 32
Q ss_pred hhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000167 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1972)
Q Consensus 479 ~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~ 558 (1972)
......+-.... ...+.+.+...
T Consensus 172 ~~~~~~i~~~g~--v~~Lv~lL~~~------------------------------------------------------- 194 (644)
T 2z6h_A 172 QESKLIILASGG--PQALVNIMRTY------------------------------------------------------- 194 (644)
T ss_dssp HHHHHHHHHTTH--HHHHHHHHTTC-------------------------------------------------------
T ss_pred cHHHHHHHHcCC--hHHHHHHHHcC-------------------------------------------------------
Confidence 211111111000 00111111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchh
Q 000167 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 638 (1972)
Q Consensus 559 ~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~ 638 (1972)
+.+++...+ ..++..|... -..|.. +++. ..
T Consensus 195 -------------------------------~~~~~~~~a-----~~~L~nLs~~-~~~~~~-------l~~~-----g~ 225 (644)
T 2z6h_A 195 -------------------------------TYEKLLWTT-----SRVLKVLSVC-SSNKPA-------IVEA-----GG 225 (644)
T ss_dssp -------------------------------CCHHHHHHH-----HHHHHHHTTC-TTHHHH-------HHHT-----TH
T ss_pred -------------------------------ChHHHHHHH-----HHHHHHHhcC-cccHHH-------HHHC-----CC
Confidence 001110000 0111111110 001100 0000 01
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh-
Q 000167 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP- 715 (1972)
Q Consensus 639 ~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~- 715 (1972)
.+.++.+ +.+.+..+...++.+|..+....+.. .....+++.|+.-+.+ ..++..+..+|..++.....
T Consensus 226 l~~L~~l------l~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~ 297 (644)
T 2z6h_A 226 MQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297 (644)
T ss_dssp HHHHHTT------TTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHH------HhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2233332 34456778888888888877643322 1234577777776654 56788888888888763211
Q ss_pred ------hHHHHHHHHhhhhCC-ChHHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCc-hhHHHHHHHH
Q 000167 716 ------GFIFERLYKIMKDHK-NPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSA-AATRNATIKL 782 (1972)
Q Consensus 716 ------~~vl~~l~~~l~~~K-npKv~~e~l~~L~~~i~~fG~~~-----l~~k~li~~l~~~gL~~sn-~~VR~aA~~l 782 (1972)
.-+++.++..+.... .+.++..++..|..+....+... +--...++.+..+ |.+.+ +.||.+|..+
T Consensus 298 ~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l-L~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGL 376 (644)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH-hCccCchHHHHHHHHH
Confidence 114566666654333 48999999998888753211100 0001356667777 88775 7999999999
Q ss_pred HHHHHHhhChhHHhhh--hcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHH
Q 000167 783 LGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (1972)
Q Consensus 783 l~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~ 860 (1972)
++.|.. ++.....+ .+.-|.+.+.+.....+++.+..-+ . +.+. +..
T Consensus 377 L~nLa~--~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~a----------l------~n~~-----~~~-------- 425 (644)
T 2z6h_A 377 IRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----------G------TQQQ-----FVE-------- 425 (644)
T ss_dssp HHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-------------------------------CC--------
T ss_pred HHHHcc--CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhc----------c------ccch-----hcc--------
Confidence 988864 33322222 4566777777776544443211000 0 0000 000
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh--h
Q 000167 861 SLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--G 936 (1972)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~--~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~--~ 936 (1972)
+..+..++..++..|..+..... ..+. -...+..|...|.+.+..++..|+.++..++.. +.....+. .
T Consensus 426 --~~~~~~v~~~a~~aL~~La~~~~~~~~l~---~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g 498 (644)
T 2z6h_A 426 --GVRMEEIVEGCTGALHILARDVHNRIVIR---GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEG 498 (644)
T ss_dssp --SSCHHHHHHHHHHHHHHHTTSHHHHHHHH---HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTT
T ss_pred --cccHHHHHHHHHHHHHHHhcCHHHHHHHH---hCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcC
Confidence 00123445556666665543110 0010 134667888888899999999999998888742 22332222 2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.++.+...+.+.++.||.+|..+|..+....+
T Consensus 499 ~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 499 ATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred ChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 46788899999999999999999988866553
No 41
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.63 E-value=9.7e-08 Score=128.85 Aligned_cols=194 Identities=18% Similarity=0.225 Sum_probs=154.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHc--ChhhHhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM--GPAVEKSS 934 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~al--g~~~~~~~ 934 (1972)
++++.+...+-..|+++...+..++.+. .....-. ..++..|++.+.|.+.. ..|+..++.||... ++.+++|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGN-IIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSS-CSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhcc-ccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 4556666555667888888888887531 1111112 46889999999887655 89999999999655 45899999
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC-CCh
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA 1010 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l---~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~-~~~ 1010 (1972)
-.++|.++..++|+.+.||+||..++++++..++. ..++|.|..+|.+.. .|+.|..+|..+.......+.. ...
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 99999999999999999999999999999999974 568999999998654 5999999999998877655321 122
Q ss_pred hhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000167 1011 AHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1972)
Q Consensus 1011 ~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1972)
.+.+.| +..|+.|..++|.++|.++|..++.++++..+.++++.|
T Consensus 173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~ 218 (986)
T 2iw3_A 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL 218 (986)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH
T ss_pred ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence 334445 777999999999999999999999999999999887543
No 42
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.60 E-value=2.2e-05 Score=101.52 Aligned_cols=482 Identities=13% Similarity=0.072 Sum_probs=269.6
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhc--C--C
Q 000167 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAG--C--L 399 (1972)
Q Consensus 326 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~--~--~ 399 (1972)
.++.|.+.+.+.+..++..|+.++..|+..-.....-. ....++.++..+... ...++..+..+|..+.... . .
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 56677777888899999999999999986432211111 135788999988754 7888888888888764320 0 0
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 400 ~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
.-...++.+...+++.++.++..++..|..+....+... ... -...+|.+++.+.+.++++|..+..++..+.. +.
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--~~ 174 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GN 174 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TC
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH-HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--CC
Confidence 011367888889999999999999999998776543211 111 24678999999999999999999999986653 32
Q ss_pred hhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q 000167 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1972)
Q Consensus 479 ~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~ 558 (1972)
......+-.-+. ...+.+.+...
T Consensus 175 ~~~~~~i~~~~~--i~~L~~ll~~~------------------------------------------------------- 197 (529)
T 1jdh_A 175 QESKLIILASGG--PQALVNIMRTY------------------------------------------------------- 197 (529)
T ss_dssp HHHHHHHHHTTH--HHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHHHCCC--HHHHHHHHHhC-------------------------------------------------------
Confidence 211111111000 00111111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchh
Q 000167 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 638 (1972)
Q Consensus 559 ~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~ 638 (1972)
+.++....+ ..++..|.... ..|.. +++. ..
T Consensus 198 -------------------------------~~~~~~~~a-----~~~L~~l~~~~-~~~~~-------~~~~-----g~ 228 (529)
T 1jdh_A 198 -------------------------------TYEKLLWTT-----SRVLKVLSVCS-SNKPA-------IVEA-----GG 228 (529)
T ss_dssp -------------------------------CCHHHHHHH-----HHHHHHHTTST-THHHH-------HHHT-----TH
T ss_pred -------------------------------ChHHHHHHH-----HHHHHHHhcCc-ccHHH-------HHHC-----CC
Confidence 000000000 00111111100 00000 0000 01
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcC--
Q 000167 639 VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG-- 714 (1972)
Q Consensus 639 ~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~-- 714 (1972)
.+.++.+ +.+.+..+...++.++..+....+... ....++|.|+.-+.+ ..++..+..+|..++....
T Consensus 229 ~~~L~~l------l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 300 (529)
T 1jdh_A 229 MQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300 (529)
T ss_dssp HHHHHTT------TTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHH------HhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 2223332 345567788888888888776433221 234567777776654 4678888888888765321
Q ss_pred h-----hHHHHHHHHhhhh-CCChHHHHHHHHHHHHHHHHhCCC-----CCChhhHHHHHHhcCCCCCc-hhHHHHHHHH
Q 000167 715 P-----GFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSA-AATRNATIKL 782 (1972)
Q Consensus 715 ~-----~~vl~~l~~~l~~-~KnpKv~~e~l~~L~~~i~~fG~~-----~l~~k~li~~l~~~gL~~sn-~~VR~aA~~l 782 (1972)
- .-+++.++..+.. ..++.++..++..|..+....+.. .+--...++.+..+ +.+.+ +.||..|..+
T Consensus 301 ~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH-hccccchHHHHHHHHH
Confidence 0 1245566666543 345899999999988775321110 00001235556666 78776 5999999998
Q ss_pred HHHHHHhhChhHHhhh--hcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHH
Q 000167 783 LGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (1972)
Q Consensus 783 l~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~ 860 (1972)
++.+-. ++.-...+ .++-|.+.+.+.....+++.+..-+ +... .+.....
T Consensus 380 l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~----l~n~-----------------~~~~~~~----- 431 (529)
T 1jdh_A 380 IRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG----GTQQ-----------------QFVEGVR----- 431 (529)
T ss_dssp HHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC--------------------------------CBTTBC-----
T ss_pred HHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcc----cCch-----------------hhhcccc-----
Confidence 888864 33333333 3556777777766544433211000 0000 0000000
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hh
Q 000167 861 SLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KG 936 (1972)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~--~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~ 936 (1972)
.-..+..++..+..++.... ..+.. ...+..|...+.|.+..++..|+.++..++.. +.....+ ..
T Consensus 432 -----~~~i~~~~~~al~~L~~~~~~~~~l~~---~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~ 501 (529)
T 1jdh_A 432 -----MEEIVEGCTGALHILARDVHNRIVIRG---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEG 501 (529)
T ss_dssp -----HHHHHHHHHHHHHHHTTSHHHHHHHHH---TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHHhcCchHHHHHhc---cCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcC
Confidence 11223344444444432100 00111 23567788888999999999999888887621 2222222 13
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAW 963 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i 963 (1972)
.++.+...+.+.++.|+..|..+|..+
T Consensus 502 ~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 502 ATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 567788888888899999888887654
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.59 E-value=6.8e-05 Score=99.89 Aligned_cols=460 Identities=12% Similarity=0.057 Sum_probs=272.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhCchhHH
Q 000167 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMRPLE 482 (1972)
Q Consensus 404 il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds-~~~VR~aA~~~l~~l~~~~ge~~~~ 482 (1972)
.++.+...|++.++.+|..++..|..+..........-....+++.+++.|.++ ++++|..|..+|..+.. +..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~---~~~-- 89 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH---HRE-- 89 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT---SHH--
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---Chh--
Confidence 567777777888889998888888876554321110011235788888888765 89999999888864432 110
Q ss_pred HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000167 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (1972)
Q Consensus 483 ~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~ 562 (1972)
.+..+ .+. +
T Consensus 90 ---------~~~~i---~~~-g---------------------------------------------------------- 98 (644)
T 2z6h_A 90 ---------GLLAI---FKS-G---------------------------------------------------------- 98 (644)
T ss_dssp ---------HHHHH---HTT-T----------------------------------------------------------
T ss_pred ---------hHHHH---HHc-C----------------------------------------------------------
Confidence 01111 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc------
Q 000167 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------ 636 (1972)
Q Consensus 563 g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------ 636 (1972)
.-+.++..|.+.+...|..|+..|..+........
T Consensus 99 ---------------------------------------~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~ 139 (644)
T 2z6h_A 99 ---------------------------------------GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 139 (644)
T ss_dssp ---------------------------------------HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred ---------------------------------------CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHC
Confidence 01245566777778888888888887776532211
Q ss_pred hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhh
Q 000167 637 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK-CVVLCLLGISERVADI---KTRAHAMKCLTTFSEA 712 (1972)
Q Consensus 637 ~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~-~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~ 712 (1972)
...+.++.+| ++.|.++...++.+|..++......... .-...++.|+.-+.+. +.+..+..+|..++..
T Consensus 140 g~i~~Lv~lL------~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 140 GGLQKMVALL------NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp THHHHHHHGG------GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHH------CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 1233444444 3446678887778887776421110000 0012355555555442 4556666677666532
Q ss_pred cCh------hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 000167 713 VGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1972)
Q Consensus 713 ~~~------~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~L 786 (1972)
... .-++..+++.+ .+.++.++..++..|..+.... ........+++.+..+ +.+.++.||..|..+|..|
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~i~~Lv~l-L~~~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAA-TKQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNL 290 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGC-TTCCSCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcc-hhhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 111 11345555554 5668999999999888886543 2223356788888888 9999999999999999888
Q ss_pred HHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCC--
Q 000167 787 HKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-- 864 (1972)
Q Consensus 787 y~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d-- 864 (1972)
... ++..+..+ . +. + ..+.|+..+.+
T Consensus 291 ~~~-~~~~~~~v-----------~----~~-g-----------------------------------~v~~Lv~lL~~~~ 318 (644)
T 2z6h_A 291 TCN-NYKNKMMV-----------C----QV-G-----------------------------------GIEALVRTVLRAG 318 (644)
T ss_dssp HTT-CHHHHHHH-----------H----HT-T-----------------------------------HHHHHHHHHHHHT
T ss_pred HcC-CHHHHHHH-----------H----Hc-C-----------------------------------CHHHHHHHHHccC
Confidence 542 11111111 0 00 0 01223333332
Q ss_pred CCHHHHHHHHHHHHHHHHHcc--ccCCCCC-hhhHHHHHHhccccch-HHHHHHHHHHHHHHHHHcChhhHh-h-hhhHH
Q 000167 865 PDWKVRLESIEAVNKILEEAN--KRIQPAG-TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEK-S-SKGVL 938 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~--~~I~~~~-~~eL~~~L~~~L~DsN-~~V~~~Al~~l~~La~alg~~~~~-~-~~~ll 938 (1972)
..+.+|..|+..|..+..... ...+... -...+..|...|.+.+ ..++..|+.+++.|+.. ....+ . -..++
T Consensus 319 ~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i 396 (644)
T 2z6h_A 319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAI 396 (644)
T ss_dssp TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHH
T ss_pred CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCH
Confidence 237888888888887753100 0000000 0235677888887664 68999999999988742 22112 1 13477
Q ss_pred HHHHHHhCCC----------------------cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHH
Q 000167 939 SDILKCLGDN----------------------KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGR 990 (1972)
Q Consensus 939 p~ll~~L~D~----------------------k~~Vr~Aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~~~~~~~R 990 (1972)
|.++..|.+. ...|+.++..+|..++.... -...++.+...|.+. ++.++
T Consensus 397 ~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~ 474 (644)
T 2z6h_A 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQ 474 (644)
T ss_dssp HHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCS--CHHHH
T ss_pred HHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCC--CHHHH
Confidence 7777777653 34567777777775543211 123577788888865 57788
Q ss_pred HHHHHHHHHHhccCCCCCC-h--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000167 991 KDLFDWLSKQLTGLSGFPD-A--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~-~--~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
..++..|...... +.... + ...+.++..++.|.+++||.+|..+|..+...-+
T Consensus 475 ~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 475 RVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 8887776654421 11000 0 1234568888999999999999999988766554
No 44
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.56 E-value=0.00031 Score=98.04 Aligned_cols=334 Identities=12% Similarity=0.102 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc--------chhhhHHHHHHHHHHHhhc-----C---------h
Q 000167 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA--------DIKTRAHAMKCLTTFSEAV-----G---------P 715 (1972)
Q Consensus 658 qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg--------d~K~r~~a~~~L~~l~e~~-----~---------~ 715 (1972)
.+...+.+++..++... .+..+..+++.+-..+. |-+.|+.|.-++.++++.. + .
T Consensus 376 s~R~aa~~~L~~l~~~~---~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKN---EVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 34556667777777653 23445555555544443 2367899998999998642 1 1
Q ss_pred -hHHHHHHHHhhhhCC---ChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhC
Q 000167 716 -GFIFERLYKIMKDHK---NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1972)
Q Consensus 716 -~~vl~~l~~~l~~~K---npKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G 791 (1972)
.++...+++.+ .+. +|.+|..++..+.+..+.+.. -....+++.+... +.++++.||.+|..++..+.....
T Consensus 453 ~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~~--~~l~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 453 VDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLTK--AQLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSCH--HHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCCH--HHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhccc
Confidence 12334456655 344 899999999999887765421 1245677777675 899999999999999988765322
Q ss_pred -----------hhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHH
Q 000167 792 -----------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 860 (1972)
Q Consensus 792 -----------~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~ 860 (1972)
..+.+|+.. +++.|-.-+++... .+ ..
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~----ll~~L~~ll~~~~~-~~----------------------------------~~--- 566 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEI----LLKNLIALILKHGS-SP----------------------------------EK--- 566 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHH----HHHHHHHHHHTTCC-CH----------------------------------HH---
T ss_pred ccccccccccHHHhhhhHHH----HHHHHHHHHHhccC-CC----------------------------------Cc---
Confidence 223444433 33333333333210 00 00
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-----ccchHHHHHHHHHHHHHHHHHcCh-hhHhhh
Q 000167 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGP-AVEKSS 934 (1972)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L-----~DsN~~V~~~Al~~l~~La~alg~-~~~~~~ 934 (1972)
-.+...+++.+..++......+.|. +..++..|...+ +..|+.+....+++++.++.+.++ .+.++.
T Consensus 567 ------~~~~e~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 639 (960)
T 1wa5_C 567 ------LAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV 639 (960)
T ss_dssp ------HTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred ------ccccHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 0001245556766666544556663 466666666554 234777777889999999998665 477888
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-C----chhhHHHHH--HHHhcCCCChhHHHHHHHHHHHHhccCCC-
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H----LDKMVPYVT--TALTDAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~-~----l~~ll~~l~--~~L~~~~~~~~~R~~~l~~L~~~l~~~~~- 1006 (1972)
..++|.+...|..........+...+..++... + +..++|.+. ..++... .-..++..|..++...+.
T Consensus 640 ~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~ 715 (960)
T 1wa5_C 640 DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG----NIPAVTRLLKSFIKTDSSI 715 (960)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT----THHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC----CchhHHHHHHHHHHhChHH
Confidence 899999998887666667888888888887764 2 234555444 3333221 112344444443322111
Q ss_pred CCChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000167 1007 FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1972)
Q Consensus 1007 ~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1972)
...+..++.-+..++.++.. +..|..++..+...+|...+.+++.
T Consensus 716 ~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~ 760 (960)
T 1wa5_C 716 FPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIK 760 (960)
T ss_dssp CSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHH
Confidence 00012223334456667664 3788999999999999876777763
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.51 E-value=1.1e-05 Score=104.89 Aligned_cols=375 Identities=11% Similarity=0.116 Sum_probs=232.7
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhcc--ccch-----hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ--NLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~--~~~~-----~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
+++++.+.|.+-..++.|+..+.+++.... +.+. ....|+++|. .+.|..++..+..+|..++.....
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 678999999999999999999998875422 1111 1344555553 345678888888888888753211
Q ss_pred CchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcC--hhH-----HHHHHHHhhhhCC----ChHHHHHHHHHH
Q 000167 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDHK----NPKVLSEGILWM 742 (1972)
Q Consensus 677 ~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~--~~~-----vl~~l~~~l~~~K----npKv~~e~l~~L 742 (1972)
.....+ .-++|.|+.-+.+ ..++..|..+|..++.... -+. ++..++..+.... ...+...++..+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 1367888876665 4688889889988875321 111 1334444432211 222333444444
Q ss_pred HHHHHHhCCC-C-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCC
Q 000167 743 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1972)
Q Consensus 743 ~~~i~~fG~~-~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~ 820 (1972)
+.+...-... . ..+..+++.+..+ +.+.++.|+..|..++..+..... .....+. .
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~------------~~~~~v~----~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPN------------ERIEMVV----K----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCH------------HHHHHHH----T-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhh------------hhHHHHH----h-----
Confidence 4443311111 1 1235678888888 999999999999888776643211 0000000 0
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC-hhhHHHH
Q 000167 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (1972)
Q Consensus 821 ~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~-~~eL~~~ 899 (1972)
..+.+.|+..+.+.++.++..++..|..++... ....... -...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 002345777788899999999999999887421 1000000 0234566
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHcChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------
Q 000167 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 970 (1972)
Q Consensus 900 L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~-------- 970 (1972)
|...|.+.+..++..|+.+|+.|+..-....... -..++|.++..+.+....++..|..+|..++.....+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 7777888899999999999999875322222222 2358999999999999999999999999888765422
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC---CCCCChhhh------HHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~---~~~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
.+++.|...|..+ ++.++..++..|...+... +....+... +.-|-....+.|.+|++.|...+..+
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2577788888865 6888888887776655322 211111111 12233345788999999998877665
No 46
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.49 E-value=7.7e-06 Score=105.87 Aligned_cols=375 Identities=11% Similarity=0.104 Sum_probs=232.0
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhcc--ccch-----hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCC
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ--NLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~--~~~~-----~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~ 676 (1972)
+++++.|.|.+-..++.|+..+.+++.... +.+. ....|+++|. .+.|..++..+.-+|..++...+.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 788999999999999999999998875522 1111 1234455542 245677888888888888753211
Q ss_pred CchhhHH-HHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcCh--hH-----HHHHHHHhhhhC----CChHHHHHHHHHH
Q 000167 677 FPKKCVV-LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDH----KNPKVLSEGILWM 742 (1972)
Q Consensus 677 ~~~~~~~-~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~--~~-----vl~~l~~~l~~~----KnpKv~~e~l~~L 742 (1972)
.....+. -.+|.|+.-+.+ ..++..|..+|..++..... +. .+..++..+... ....+...++..+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 1111111 267888887765 46899999999888753211 11 133344443211 1223344455555
Q ss_pred HHHHHHhCCC-C-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCC
Q 000167 743 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1972)
Q Consensus 743 ~~~i~~fG~~-~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~ 820 (1972)
+.+...-... . ..+..+++.+..+ +.+.++.|+..|..++..|.... +...+.+ ..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~~~------------~~~~~~i----~~----- 272 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGP------------NERIEMV----VK----- 272 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSC------------HHHHHHH----HT-----
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhch------------hhhHHHH----Hh-----
Confidence 5544321111 1 1235678888888 99999999999988887664211 1100100 00
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCC-hhhHHHH
Q 000167 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (1972)
Q Consensus 821 ~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~-~~eL~~~ 899 (1972)
..+.+.++..+.+.++.++..++..+..++... ....... -...+..
T Consensus 273 -------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~ 320 (510)
T 3ul1_B 273 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 320 (510)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHH
Confidence 002346777788899999999999998886421 0000000 0224455
Q ss_pred HHhccccchHHHHHHHHHHHHHHHHHcChhhHhh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------h
Q 000167 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------D 970 (1972)
Q Consensus 900 L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~-~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l--------~ 970 (1972)
|...|.+.+..++..|+.+|+.|+..-....... -..++|.++..+.+....||..|..+|..+...... .
T Consensus 321 L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~ 400 (510)
T 3ul1_B 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400 (510)
T ss_dssp CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence 6677788899999999999999874322222222 235889999999999999999999999988876542 2
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC---CCCCChhhh------HHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000167 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1972)
Q Consensus 971 ~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~---~~~~~~~~l------l~pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1972)
.+++.|...|.++ ++.++..++..|...+... +....+..+ +.-|-....+.|.+|++.|...+..+
T Consensus 401 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 401 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567788888865 6888888887776655422 211111111 11233344778899999888777655
No 47
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.47 E-value=0.00014 Score=94.07 Aligned_cols=368 Identities=13% Similarity=0.047 Sum_probs=207.7
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCc
Q 000167 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (1972)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~ 678 (1972)
.++..|.+.+...|..|+..|..+........ ...+.++.++ .+.+.++...+..++..++.......
T Consensus 105 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll------~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL------NKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG------GCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHH------hcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34455666666777778877777665422210 1123344433 45567777777777776654211000
Q ss_pred hhhH-HHHHHHHHhhhcc---hhhhHHHHHHHHHHHhhcCh------hHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHH
Q 000167 679 KKCV-VLCLLGISERVAD---IKTRAHAMKCLTTFSEAVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1972)
Q Consensus 679 ~~~~-~~il~~LveKlgd---~K~r~~a~~~L~~l~e~~~~------~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~ 748 (1972)
.... ...++.++.-+.+ ...+..+..+|..++..-.. .-+++.++..+ .+.++.++..++..|..+...
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcC
Confidence 0000 1234455544433 23455566666666532111 12345555554 566899999999888888764
Q ss_pred hCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000167 749 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1972)
Q Consensus 749 fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~ 828 (1972)
... ......+++.+..+ +.+.++.||..|..+++.|... ++.....+ . +..
T Consensus 258 ~~~-~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~-----------~----~~~----------- 308 (529)
T 1jdh_A 258 ATK-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------C----QVG----------- 308 (529)
T ss_dssp CTT-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTT-CHHHHHHH-----------H----HTT-----------
T ss_pred Chh-hHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH-----------H----HcC-----------
Confidence 322 22346788888888 9999999999999998888432 11111111 0 000
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHHhcC--CCCHHHHHHHHHHHHHHHHHccccC---CCCC-hhhHHHHHHh
Q 000167 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAVNKILEEANKRI---QPAG-TGELFGGLRG 902 (1972)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~--d~~Wk~R~eale~l~~ll~~a~~~I---~~~~-~~eL~~~L~~ 902 (1972)
..+.++..+. +.+|..|..|+..|..+.... ... .... -...++.|..
T Consensus 309 -------------------------~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~i~~~~~i~~L~~ 362 (529)
T 1jdh_A 309 -------------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRH-QEAEMAQNAVRLHYGLPVVVK 362 (529)
T ss_dssp -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS-TTHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHcCChhHHHH
Confidence 0122333332 235888888888888775310 000 0000 0134677888
Q ss_pred ccccch-HHHHHHHHHHHHHHHHHcChhhHh-hh-hhHHHHHHHHhCCCcHHHHHHHH----------------------
Q 000167 903 RLYDSN-KNLVMATLITLGAVASAMGPAVEK-SS-KGVLSDILKCLGDNKKHMRECTL---------------------- 957 (1972)
Q Consensus 903 ~L~DsN-~~V~~~Al~~l~~La~alg~~~~~-~~-~~llp~ll~~L~D~k~~Vr~Aa~---------------------- 957 (1972)
.|.+.+ ..++..++.+++.++. +..... +. ..++|.++..+.+....+|..|.
T Consensus 363 lL~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~ 440 (529)
T 1jdh_A 363 LLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 440 (529)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHH
Confidence 887766 5899999999998874 332222 22 25789999988876666665433
Q ss_pred HHHHHHHHhc------CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC-Ch--hhhHHHHHhhcCCCCHHH
Q 000167 958 TVLDAWLAAV------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA--AHLLKPASIAMTDKSSDV 1028 (1972)
Q Consensus 958 ~aL~~i~~~~------~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~-~~--~~ll~pl~~~L~D~~~dV 1028 (1972)
.++..+.... .-...++.+...+.++ ++.++..+...|..... .+... .+ ...+.++...+.|.+.+|
T Consensus 441 ~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~--~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v 517 (529)
T 1jdh_A 441 GALHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGV 517 (529)
T ss_dssp HHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHH
T ss_pred HHHHHHhcCchHHHHHhccCCccHHHHHHcCC--chHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHH
Confidence 3333322110 0123457777888766 57788777766655332 11100 00 123456888899999999
Q ss_pred HHHHHHHHHHH
Q 000167 1029 RKAAEACIVEI 1039 (1972)
Q Consensus 1029 R~aA~~~l~~l 1039 (1972)
|+.|..+|..+
T Consensus 518 ~~~a~~aL~~l 528 (529)
T 1jdh_A 518 ATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999888654
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.47 E-value=1.6e-05 Score=102.93 Aligned_cols=380 Identities=12% Similarity=0.123 Sum_probs=237.9
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCC-Ch--HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DF--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~-~y--~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (1972)
++..+.+.+.+-..+.+|+..++++++..+-.+- .. ..+++.|...++ +.+..+...|+.+|..||.+-...-...
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4677888999999999999999998853322220 00 136778888887 6678899999999999997543222222
Q ss_pred hh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000167 364 SR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (1972)
Q Consensus 364 ~~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~------~il~~l~~~l~~Kn-----p~vR~~~l~~L~~~l 431 (1972)
+. ..+|.|+..+++....|++.+..||..+... +.... ..++.+...+...+ ..+...++..+..+.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 4799999999999999999999999988754 11111 23566666666433 233444444444433
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000167 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (1972)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~ 511 (1972)
.......-......++|.|.+++.+.+++|+..|..++..+... .. .....+ ... |
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~-----------~~~~~i---~~~-g------- 274 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN-----------ERIEMV---VKK-G------- 274 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CH-----------HHHHHH---HTT-T-------
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hh-----------hhHHHH---Hhc-c-------
Confidence 32211111123467899999999999999999988887655421 11 001111 000 0
Q ss_pred CCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 000167 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (1972)
Q Consensus 512 ~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ 591 (1972)
T Consensus 275 -------------------------------------------------------------------------------- 274 (510)
T 3ul1_B 275 -------------------------------------------------------------------------------- 274 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHH--HHhc-CCCCccchHHHHHHHHHHHH
Q 000167 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR--LVCM-LPGWSEKNVQVQQQVIEVIN 668 (1972)
Q Consensus 592 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~--~L~~-~p~~~DsN~qV~~~~Le~l~ 668 (1972)
+.+.++..|.+.++..+..++..|..++...+. ....++. .+.. ...+.+.+..|...++-+|.
T Consensus 275 ----------~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~---~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 275 ----------VVPQLVKLLGATELPIVTPALRAIGNIVTGTDE---QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ----------CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH---HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ----------cchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH---HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 013456677888888888888888877544221 1222222 1100 01345677788888888887
Q ss_pred HHHHHcCCCchhhH-HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhcChhH--------HHHHHHHhhhhCCChHHHHH
Q 000167 669 YLAATATKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVLSE 737 (1972)
Q Consensus 669 ~l~~~~~~~~~~~~-~~il~~LveKlg--d~K~r~~a~~~L~~l~e~~~~~~--------vl~~l~~~l~~~KnpKv~~e 737 (1972)
.++........... ..++|.|+.-+. +.+++..|.-+|..++....++. ++..|+..+ ..++++++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHH
Confidence 76542111000011 136677777664 45788888888888887655443 244555554 7889999999
Q ss_pred HHHHHHHHHHHhCCCC-C-Chh------hHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000167 738 GILWMVSAVEDFGVSH-L-KLK------DLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1972)
Q Consensus 738 ~l~~L~~~i~~fG~~~-l-~~k------~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (1972)
++..|..++....... . ... ..++.+..+ ..|.|..|++.|..++...|
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999998886322111 0 111 124455666 78899999999999876554
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.43 E-value=3.6e-05 Score=100.10 Aligned_cols=377 Identities=13% Similarity=0.132 Sum_probs=234.6
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~---y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (1972)
+++...+.+.+-..+.+|+..++++++..+-.+-+ -..+++.|...+. +.+..+...|+.+|..||.+-...-...
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 36778889999999999999999987533222210 1246778888887 6778899999999999997543222222
Q ss_pred -hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000167 364 -SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 431 (1972)
Q Consensus 364 -~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~------~il~~l~~~l~~Kn-----p~vR~~~l~~L~~~l 431 (1972)
-...+|.|+..+......|++.+..||..+... +.... ..++.+...+...+ ..+...++..+..+.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 224789999999999999999999999988753 11111 23566666665433 233444444444433
Q ss_pred HhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000167 432 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511 (1972)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~ 511 (1972)
.......-......++|.|.+++.+.+++|+..|..+|..+... .. .....+ +.. |
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~-----------~~~~~v---~~~-g------- 293 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PN-----------ERIEMV---VKK-G------- 293 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CH-----------HHHHHH---HTT-T-------
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hh-----------hhHHHH---Hhc-c-------
Confidence 32221111123467899999999999999999888777655421 11 000111 000 0
Q ss_pred CCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 000167 512 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 591 (1972)
Q Consensus 512 ~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ 591 (1972)
T Consensus 294 -------------------------------------------------------------------------------- 293 (529)
T 3tpo_A 294 -------------------------------------------------------------------------------- 293 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHhcCCCCccchHHHHHHHHH
Q 000167 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIE 665 (1972)
Q Consensus 592 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~lv~~L~~~p~~~DsN~qV~~~~Le 665 (1972)
+.+-++..|.+.++..+..++..|..++.+.+... .....++.+| .+.+..|...++-
T Consensus 294 ----------~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 294 ----------VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATW 357 (529)
T ss_dssp ----------CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHH
T ss_pred ----------chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHH
Confidence 01345567777888888888888877654321110 0112333333 4556678888888
Q ss_pred HHHHHHHHcCCCchhhH-HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcChhH--------HHHHHHHhhhhCCChHH
Q 000167 666 VINYLAATATKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKV 734 (1972)
Q Consensus 666 ~l~~l~~~~~~~~~~~~-~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~--------vl~~l~~~l~~~KnpKv 734 (1972)
+|..++........... ..++|.|+.-+.+ .+++..|.-+|..++....++. ++..|+..+ ..+++++
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i 436 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKI 436 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHH
Confidence 88777642111110011 1366777776654 5688888888888877655543 244555554 6889999
Q ss_pred HHHHHHHHHHHHHHhCCCC-C-ChhhH------HHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000167 735 LSEGILWMVSAVEDFGVSH-L-KLKDL------IDFCKDTGLQSSAAATRNATIKLLGALH 787 (1972)
Q Consensus 735 ~~e~l~~L~~~i~~fG~~~-l-~~k~l------i~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (1972)
+..++..|..++....... . .+..+ ++.+..+ ..|.|..|++.|..++-..|
T Consensus 437 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 437 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999999988876321110 0 11112 3445666 78999999999988875544
No 50
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.40 E-value=0.0049 Score=86.79 Aligned_cols=694 Identities=10% Similarity=0.077 Sum_probs=334.8
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccCh--h-HHHHhhh
Q 000167 98 IAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--K-RILKMLP 174 (1972)
Q Consensus 98 LveK~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~--k-~il~~l~ 174 (1972)
++...+++....|..|.+.|..+-+....-..+..++. .+.++.++..|...|.+.+...-. .++. + .|-..+.
T Consensus 21 ~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~--~s~~~~vr~~aa~~Lk~~i~~~W~-~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 21 VVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWK-LLPNDHRIGIRNFVV 97 (1049)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHH--HCSCHHHHHHHHHHHHHHHHHTGG-GSCHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHhhCc-cCCHHHHHHHHHHHH
Confidence 33444555556788888888777543222122333332 256899999999999998875332 2442 1 1333344
Q ss_pred hhhcC----C-----ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhh
Q 000167 175 ELFDH----Q-----DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL 245 (1972)
Q Consensus 175 ~ll~~----~-----d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~ 245 (1972)
.++.+ . ++.||.....++.+|.++..++.- +.+ +.+|-..+. .+ +. .. +.
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-p~l--------l~~L~~~~~---~~--~~-----~~--~~ 156 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-PEF--------IPELIGSSS---SS--VN-----VC--EN 156 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-TTH--------HHHHHHHHT---TC--HH-----HH--HH
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-hHH--------HHHHHHHHc---cC--hH-----HH--HH
Confidence 43332 1 578999999999999888654211 111 122212111 00 00 00 00
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCCh--HHHHHHHH-HHHHHhcCCCCCCCC
Q 000167 246 GQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKW--SERKDAVA-ELTKLASTKRIAPGD 322 (1972)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kW--keR~eaL~-~L~~l~~~~ki~~~~ 322 (1972)
...++..++ +++.+ . +..| ..|..-++ .++. .
T Consensus 157 --------------------------------~l~~L~~l~-eev~~-~-~~~~~~~~r~~~lk~~l~~----------~ 191 (1049)
T 3m1i_C 157 --------------------------------NMIVLKLLS-EEVFD-F-SAEQMTQAKALHLKNSMSK----------E 191 (1049)
T ss_dssp --------------------------------HHHHHHHHH-HHHHT-S-CTTTSCHHHHHHHHHHHHH----------H
T ss_pred --------------------------------HHHHHHHHH-HHHHH-h-cchhhhhHHHHHHHHHHHH----------H
Confidence 000111111 11100 0 0000 11222221 1111 1
Q ss_pred hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-
Q 000167 323 FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN- 400 (1972)
Q Consensus 323 y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~- 400 (1972)
+..++..+...+. ..+..++..+++|+..+..-....+ -.-..+++.+++.+- ..+.++.++.+|+..++......
T Consensus 192 ~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~ 269 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQD 269 (1049)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcc
Confidence 4456666667776 4466788888888877654222111 011235666664443 26788999999999998752111
Q ss_pred -------hHhHHHHHHHHhhc------------------CChHHHHHHHHHHHHHHHhcCh-----hHHHHhhhhHHHHH
Q 000167 401 -------LVDVVEDVKTSVKN------------------KVPLVRSLTLNWVTFCIETSSK-----AAVLKVHKDYVPIC 450 (1972)
Q Consensus 401 -------l~~il~~l~~~l~~------------------Knp~vR~~~l~~L~~~l~~~~~-----~~l~~~l~~l~p~l 450 (1972)
+..+++.++..++. .........+.++..+++.+.. ..+...+..+++.+
T Consensus 270 ~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 349 (1049)
T 3m1i_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 11222333332211 1233334455555544433211 11234567788889
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHh----C-chhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCCccCCCCCCCCC
Q 000167 451 MECLNDGTPEVRDAAFSVLAAIAKSV----G-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (1972)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~l~~~~----g-e~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~s~ 525 (1972)
..+....+.+|+..+.+-...+...+ . ...+.+++..| +.-++.+..-
T Consensus 350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~L-------v~~ll~~m~~-------------------- 402 (1049)
T 3m1i_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQL-------RLVIIENMVR-------------------- 402 (1049)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHH-------HHHHHHTCCC--------------------
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH-------HHHHHHhcCC--------------------
Confidence 99888889999999988777776632 1 12233343333 2223332100
Q ss_pred CCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH---------HHH
Q 000167 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE---------IES 596 (1972)
Q Consensus 526 ~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee---------~e~ 596 (1972)
|+... -. . .++.+++.+..-..|+ +-.
T Consensus 403 ~ed~~--~~-~-----------------------------------------dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 403 PEEVL--VV-E-----------------------------------------NDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp CTTCC--EE-E-----------------------------------------CTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred Cccee--ee-e-----------------------------------------CCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 00000 00 0 0000001011111111 111
Q ss_pred HhhccCcHH--------HHHhhh--cCChHHHHHHHHHHHHHHHhcccc-c-hhHHHHHHHHhcCCCC---ccchHHHHH
Q 000167 597 RLGSLIPAD--------TVGQLK--SAVWKERLEAISSLRQQVEAVQNL-D-QSVEILVRLVCMLPGW---SEKNVQVQQ 661 (1972)
Q Consensus 597 ~~~~ll~~~--------l~~~L~--s~~Wk~Rl~a~e~L~~~v~~~~~~-~-~~~~~lv~~L~~~p~~---~DsN~qV~~ 661 (1972)
.+..+.+.+ +...+. +.+|+.|.+++-.++.+....... . .....++..|...|.+ +|.++.|..
T Consensus 439 ~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~ 518 (1049)
T 3m1i_C 439 YLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVAS 518 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHH
Confidence 122223322 222333 478999999999999765443221 1 1133444444322333 245666665
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhcChhHH----------HHHHHHhh---
Q 000167 662 QVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFI----------FERLYKIM--- 726 (1972)
Q Consensus 662 ~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~v----------l~~l~~~l--- 726 (1972)
..+.++..+.+-... ....+..+++.+++.+.| .+++..|..+|..+++.++...+ ++.++..+
T Consensus 519 ~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~ 597 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKT 597 (1049)
T ss_dssp HHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 677777665542211 234677888888888887 57899999999999998765433 55555543
Q ss_pred hhCCChHHHHHHHHHHHHHHHHhCC-CCC-C-hh----hHHHHHHhcCCC----C----Cchh-HHH--HHHHHHHHHHH
Q 000167 727 KDHKNPKVLSEGILWMVSAVEDFGV-SHL-K-LK----DLIDFCKDTGLQ----S----SAAA-TRN--ATIKLLGALHK 788 (1972)
Q Consensus 727 ~~~KnpKv~~e~l~~L~~~i~~fG~-~~l-~-~k----~li~~l~~~gL~----~----sn~~-VR~--aA~~ll~~Ly~ 788 (1972)
...-.++......+.+..++...|. ... + +. .++..+... +. + .+++ ++. ...+++..+..
T Consensus 598 ~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~ 676 (1049)
T 3m1i_C 598 TADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI-VEQSTANPTLLLDSETVKIIANIIKTNVAVCT 676 (1049)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH-HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 2233445555666777777765541 000 0 11 122111111 11 0 0222 222 22345566667
Q ss_pred hhChhHHhhhhcccHHHHHHHHHH---HhcC-CCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCC
Q 000167 789 FVGPDIKGFLADVKPALLSALDAE---YEKN-PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (1972)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~e---fek~-~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d 864 (1972)
.+|..+.+++..+-+..+..+..- ++.. ...+++. . ..|.+.....+.+.+++.+.
T Consensus 677 ~l~~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~-~------------------~~p~~~~~~~~~~~l~~ll~- 736 (1049)
T 3m1i_C 677 SMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA-T------------------KTPKVRGLRTIKKEILKLVE- 736 (1049)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-G------------------GSHHHHHHHHHHHHHHHHHH-
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchh-h------------------hhHHHHHHHHHHHHHHHHHH-
Confidence 778877776654433333222211 1100 0000000 0 00000000111111111100
Q ss_pred CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc--chHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHH
Q 000167 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D--sN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (1972)
.|..+...++. ++ .+- ..+++..+...+.. +.... ..++.+++.++..+|..+.+|+..++..++
T Consensus 737 -~~~~~~~~l~~---~~-------~~~-~~~~l~~ll~~~~~~~~~~~~-~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~ 803 (1049)
T 3m1i_C 737 -TYISKARNLDD---VV-------KVL-VEPLLNAVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQGVILILQSVF 803 (1049)
T ss_dssp -HHHHHCSCHHH---HH-------HHT-HHHHHHHHHHHHHHSCGGGCC-THHHHHHHHHHHHHGGGCHHHHHHHHHHHH
T ss_pred -HHHHhCCCHHH---HH-------HHH-HHHHHHHHHHHHHhCCccccc-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 01111111110 00 000 12333333222211 11111 457899999999999889999998888888
Q ss_pred HHh-----C--CCcHHHHHHHHHHHHHHHHhcC
Q 000167 943 KCL-----G--DNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 943 ~~L-----~--D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+. + +..+.+|......+..++.++.
T Consensus 804 ~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~ 836 (1049)
T 3m1i_C 804 ECTLDMINKDFTEYPEHRVEFYKLLKVINEKSF 836 (1049)
T ss_dssp HHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCH
Confidence 774 3 4678899999999999998875
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.39 E-value=0.00024 Score=93.89 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhccCCC--CchhHHhhhhhhHhhhc-CC--cHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhhcC
Q 000167 30 EANIDLAALCDSITDP--KDNRIRELGPLFKKTVA-DS--NAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT 104 (1972)
Q Consensus 30 ~ayeel~~~~~~~~d~--~~~~~~~~~~~~~k~v~-Ds--N~~vqe~~leal~~~v~~~~~~~~~~~~~v~~~LveK~l~ 104 (1972)
-++.++++.+++.... ......+-..-+++-+. |+ +......++.-+..+.- .|.+....+.++ + |++.
T Consensus 11 ~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~-~G~d~s~~~~~v----v-kl~~ 84 (621)
T 2vgl_A 11 RGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFL-LGHDIDFGHMEA----V-NLLS 84 (621)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHH-HSCCCCSCHHHH----H-HGGG
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCCCchhHHHH----H-HHhc
Confidence 3677888887764211 11112222344555555 43 55555666666554433 344333222233 3 3555
Q ss_pred -CChhHHHHHHHHHHHHHhhhhhh---hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhh--c
Q 000167 105 -GRPKTVEKAQAVFMLWVELEAVD---VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF--D 178 (1972)
Q Consensus 105 -~k~~~k~~a~~~ll~~~E~~~~~---~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll--~ 178 (1972)
.+...|..+--.+..|.+. +++ -++..+.+.+.+.||-++..++.+|..+ +... =...+++.+.+++ .
T Consensus 85 s~~~~~Krl~YL~l~~~~~~-~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i----~~~e-~~~~l~~~v~~~l~~~ 158 (621)
T 2vgl_A 85 SNRYTEKQIGYLFISVLVNS-NSELIRLINNAIKNDLASRNPTFMGLALHCIANV----GSRE-MAEAFAGEIPKILVAG 158 (621)
T ss_dssp CSCHHHHHHHHHHHHHSCCC-CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH----CCHH-HHHHHTTHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc----CCHH-HHHHHHHHHHHHHhCC
Confidence 4677777665555555443 344 3456778899999999999999999765 3211 1356889999999 9
Q ss_pred CCChhHHHHHHHHHHHHHHhh
Q 000167 179 HQDQNVRASSKGLTLELCRWI 199 (1972)
Q Consensus 179 ~~d~~VR~~a~~l~~ely~~l 199 (1972)
|+++.||+.|..++..+|+..
T Consensus 159 d~~~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999844
No 52
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.39 E-value=4.4e-06 Score=94.56 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=135.0
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
+.+...+.+.+|..|..|+..|..+.. .+.++.|...+.|.+..|+..|+.+++.+.. ...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 356777889999999999999988743 2467778888999999999999999988742 356
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
++.|++.+++..+.||.++..+|..+- -...++.|...+++.++.+|..++..|..+- . +..+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 145 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 145 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-------HHHH
Confidence 788999999999999998888776552 2457788889999999999999998887741 1 3467
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhc
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~ 502 (1972)
+.|..+++|.++.||.+|..+|+.+..--.-..+..++.+=++.-+....+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999876321111123333443355555555555544
No 53
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.37 E-value=0.00061 Score=90.01 Aligned_cols=178 Identities=10% Similarity=0.073 Sum_probs=112.2
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh
Q 000167 856 PTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1972)
Q Consensus 856 ~~ll~~l~-d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (1972)
..++..+. |.+-.+|..+++.+..++++. ...+++..|...+.+.+..++..++..|+.+|....+.++.|+
T Consensus 371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~-------Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v 443 (621)
T 2vgl_A 371 ETVINALKTERDVSVRQRAVDLLYAMCDRS-------NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYV 443 (621)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHcChh-------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 35666677 888889999999999887643 2578888888888888888999999999999987766666665
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c-hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc-CCCCCC--
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG-LSGFPD-- 1009 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-l-~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~-~~~~~~-- 1009 (1972)
..++ +.+.+....+.+.+...+..++...+ + ...+..+.+.+.+.... ..=..+..|+..-+.. ....+.
T Consensus 444 ~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~-~~li~~~~wilGEy~~~~~~~~~~~ 518 (621)
T 2vgl_A 444 DTIL----NLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACH-ENLVKVGGYILGEFGNLIAGDPRSS 518 (621)
T ss_dssp HHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHHHHTHHHHSSTTSC
T ss_pred HHHH----HHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccch-HHHHHHHHHHhcchHHHhcccCCCC
Confidence 5444 33333333455555555665555443 2 22445566777754311 1111233465322211 111111
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000167 1010 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (1972)
Q Consensus 1010 ~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~ 1045 (1972)
..+.+..+...+.+.+..||..+-.++..+....++
T Consensus 519 p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 519 PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 123455577778888999999998888888776643
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.37 E-value=5.3e-06 Score=93.08 Aligned_cols=149 Identities=20% Similarity=0.192 Sum_probs=123.3
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
+.+.+.+.+.+|..|..|+..|..+.. ...+..|...+.|.+..|+..|+.+++.+.. ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 467888999999999999999987643 2356777788899999999999999987642 256
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
++.|++.+.+..+.||.++..+|..+- -...++.+...+++.++.+|..++..|..+- -+..+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~ 140 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAV 140 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------CGGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHHHH
Confidence 889999999999999998888876552 2457888889999999999999998887641 14567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
+.|..++.|.++.||.+|..+|+.+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999876
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.36 E-value=8.6e-06 Score=92.12 Aligned_cols=182 Identities=20% Similarity=0.176 Sum_probs=136.4
Q ss_pred cHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh
Q 000167 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1972)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (1972)
.+.++..+.|.+|.+|..|+..+..+-. .+.+..|...|.|.+..|+..|+.+++.+..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 4578888999999999999999886521 4677888888999999999999998887631
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhH
Q 000167 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014 (1972)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll 1014 (1972)
...++.++..|.|..+.||.+|..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~~ 145 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERAV 145 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-C-------CGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCC--CHHHHHHHHHHHHHc-C-------CHHHH
Confidence 34678889999999999999999998766 4456788899999876 689999999988764 1 12355
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhcc
Q 000167 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1972)
Q Consensus 1015 ~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~ 1071 (1972)
..+...+.|.++.||.+|..+|..+...-..+.+...+.+=++..+......|.+.+
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 668888999999999999999987732111123444444445555555556665543
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.35 E-value=1e-05 Score=90.79 Aligned_cols=177 Identities=21% Similarity=0.198 Sum_probs=134.4
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
..+.+++.+.+.+|.+|..|+..+..+-. .+.+..|...|.|.+..++..|+..++.+. .
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~----- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D----- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-----
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C-----
Confidence 45678999999999999999999986521 356778888889999999999999888763 1
Q ss_pred hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhh
Q 000167 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (1972)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (1972)
...++.++..|.|..+.||.+|..+|..+ +-...++.+...|.++ ++.+|..++..|...- ....
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~--------~~~~ 139 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEIG--------DERA 139 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHT--------CGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC--------CHHH
Confidence 24578889999999999999999998775 4456788889999876 6999999998887641 1345
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhH----HHHHhccCChHHHHHHHHHHhh
Q 000167 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQET----IEKNLKDIQGPALALILERIKL 1069 (1972)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~----~~~~l~~L~~~~~~~I~~~l~k 1069 (1972)
+..+...+.|.++.||..|..+|..+ |... +...+.+=++..+......+.+
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh----CchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56688899999999999999999877 4332 3333333344444444455544
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.29 E-value=5.3e-05 Score=89.59 Aligned_cols=93 Identities=12% Similarity=0.032 Sum_probs=64.3
Q ss_pred HHHHHhhhcch--hhhHHHHHHHHHHHhhcChhHHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 000167 686 LLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1972)
Q Consensus 686 l~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l 763 (1972)
++.|+..+.|. .+|..|..+|..+. ...+++.+...+ .+.++.+|..++..|.. +|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~----l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILGQ----IKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHH----SCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHHH-cCCCHHHHHHHHHHHHH----hccccccchHHHHHH
Confidence 46666666653 56777777776654 334667777765 68899999988877654 443222345566666
Q ss_pred H-hcCCCCCchhHHHHHHHHHHHHHH
Q 000167 764 K-DTGLQSSAAATRNATIKLLGALHK 788 (1972)
Q Consensus 764 ~-~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (1972)
. .+ +.+.++.||..|...|+.+..
T Consensus 96 ~~~~-~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 96 NNMA-LNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHH-HHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHHhc
Confidence 5 34 788999999999999998864
No 58
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.29 E-value=0.063 Score=75.51 Aligned_cols=494 Identities=10% Similarity=0.050 Sum_probs=258.6
Q ss_pred CChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcc----c-----CHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 000167 297 TKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITD----V-----NIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1972)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D----~-----N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (1972)
.+=..|.-|+..|+..+.. ..+.+.+...|-..|...+.+ . +..|+...+.++..|++..-+ ..++
T Consensus 61 ~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~Wp 137 (1049)
T 3m1i_C 61 TNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNWP 137 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTCT
T ss_pred CCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccch
Confidence 3455677777777775531 233333344444444444431 1 467788888899888876432 4567
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCC-------------------ChHhHHHHHHHHhh-cCChHHHHHHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCL-------------------NLVDVVEDVKTSVK-NKVPLVRSLTL 424 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~-------------------~l~~il~~l~~~l~-~Knp~vR~~~l 424 (1972)
.+++.|+..++ .....++.+..+|..+..- ... .+..+++.+...++ +.++.++..++
T Consensus 138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL 216 (1049)
T 3m1i_C 138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL 216 (1049)
T ss_dssp THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 88999999886 5556677777777776642 000 12234444455554 45688999999
Q ss_pred HHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh-Cch--hHHHhHhhccHHHHHHHHH-HH
Q 000167 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV-GMR--PLERSIEKLDDVRRNKLSE-MI 500 (1972)
Q Consensus 425 ~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~-ge~--~~~~~l~~Ld~~~~kkI~e-~~ 500 (1972)
..+..++.-.+...+. -..+++.+...+. .++++|.+|.+||..++..- +.. .+...+..+-+.-...+.+ .+
T Consensus 217 ~~l~~~l~wi~~~~~~--~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~ 293 (1049)
T 3m1i_C 217 ESLLRYLHWIPYRYIY--ETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1049)
T ss_dssp HHHHHHTTTSCTHHHH--SSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhCCHHHHh--hhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence 9888877644433221 1456666663222 37999999999999988651 221 0111111111111111111 00
Q ss_pred hcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 501 AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEA 580 (1972)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~~~s~~~~~ 580 (1972)
.. .. . . .... . .
T Consensus 294 p~-------~~------------------~---l-~~~~---~-----------------------------------~- 305 (1049)
T 3m1i_C 294 PV-------TA------------------D---L-KATY---A-----------------------------------N- 305 (1049)
T ss_dssp CT-------TS------------------C---H-HHHH---H-----------------------------------H-
T ss_pred CC-------cc------------------c---H-HHHh---c-----------------------------------c-
Confidence 00 00 0 0 0000 0 0
Q ss_pred CCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcCCCCccchHHHH
Q 000167 581 PEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660 (1972)
Q Consensus 581 ~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~p~~~DsN~qV~ 660 (1972)
... ..++.-..+..++. . -++.....+...+........++.++..... ..+..|.
T Consensus 306 -----~~~-~d~~~~~~l~~~~~-----~-----------~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~--~~d~~v~ 361 (1049)
T 3m1i_C 306 -----ANG-NDQSFLQDLAMFLT-----T-----------YLARNRALLESDESLRELLLNAHQYLIQLSK--IEERELF 361 (1049)
T ss_dssp -----TCT-THHHHHHHHHHHHH-----H-----------HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHT--SSCHHHH
T ss_pred -----CCc-chHHHHHHHHHHHH-----H-----------HHHHHHHHHcCChhhHHHHHHHHHHHHHHHc--CCcHHHH
Confidence 000 01111111111110 0 0001111111110011112222332211001 1244577
Q ss_pred HHHHHHHHHHHHHc---C---CCchhhHHHHHHHHHhhhcc----------h--------------hhhHHHHHHHHHHH
Q 000167 661 QQVIEVINYLAATA---T---KFPKKCVVLCLLGISERVAD----------I--------------KTRAHAMKCLTTFS 710 (1972)
Q Consensus 661 ~~~Le~l~~l~~~~---~---~~~~~~~~~il~~LveKlgd----------~--------------K~r~~a~~~L~~l~ 710 (1972)
..++++|..+++.. + ..-+..+..+++.++.++.- . -.+..+.++|..++
T Consensus 362 ~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~ 441 (1049)
T 3m1i_C 362 KTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLT 441 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHH
Confidence 78888888887721 1 22345666777777777621 0 11346778888888
Q ss_pred hhcChhHHHHHHHHhhh---h--CCChHHHHHHHHHHHHHHHHhCCCCC-C-hhhHHHHHHhcCCC-----CCchhHHHH
Q 000167 711 EAVGPGFIFERLYKIMK---D--HKNPKVLSEGILWMVSAVEDFGVSHL-K-LKDLIDFCKDTGLQ-----SSAAATRNA 778 (1972)
Q Consensus 711 e~~~~~~vl~~l~~~l~---~--~KnpKv~~e~l~~L~~~i~~fG~~~l-~-~k~li~~l~~~gL~-----~sn~~VR~a 778 (1972)
... +..++..+++.+. . +.+|+.+.+++..+..+....+...- . +..+++.+..+ .. +..+.||..
T Consensus 442 ~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l-~~~~~~~~~~~~v~~~ 519 (1049)
T 3m1i_C 442 HLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL-TVKKRGKDNKAVVASD 519 (1049)
T ss_dssp HHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH-TTSSCSHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH-HhhhccccchHHHHHH
Confidence 544 4445555554431 1 46899999888888765432221100 1 23345554443 22 234556656
Q ss_pred HHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHH
Q 000167 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 858 (1972)
Q Consensus 779 A~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~l 858 (1972)
+..+++.+..|.... |..+ . .+.+.+
T Consensus 520 ~~~~lgry~~~~~~~---------~~~l---~------------------------------------------~vl~~l 545 (1049)
T 3m1i_C 520 IMYVVGQYPRFLKAH---------WNFL---R------------------------------------------TVILKL 545 (1049)
T ss_dssp HHHHHHHCHHHHHHC---------HHHH---H------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhH---------HHHH---H------------------------------------------HHHHHH
Confidence 777777665554321 1100 0 012345
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHccccCC--------CCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh--
Q 000167 859 VKSLESPDWKVRLESIEAVNKILEEANKRIQ--------PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP-- 928 (1972)
Q Consensus 859 l~~l~d~~Wk~R~eale~l~~ll~~a~~~I~--------~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~-- 928 (1972)
+..+.+.+-.+|..|...+..++..+...+. |. +.+++..|...+.+....-....+++++.++.+.+.
T Consensus 546 l~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~-~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~ 624 (1049)
T 3m1i_C 546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF-IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1049)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH-HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHH
Confidence 5566677788899999999999987644432 22 467777666666553333345667888999988883
Q ss_pred hhHhhhhhHHHHHHHHhC
Q 000167 929 AVEKSSKGVLSDILKCLG 946 (1972)
Q Consensus 929 ~~~~~~~~llp~ll~~L~ 946 (1972)
...+|+..+++.++..+.
T Consensus 625 ~~~~~~~~l~~~~~~~~~ 642 (1049)
T 3m1i_C 625 ERNRLLSDLMQLPNMAWD 642 (1049)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 477899999988876654
No 59
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.22 E-value=0.00016 Score=96.75 Aligned_cols=378 Identities=12% Similarity=0.094 Sum_probs=239.4
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-----hhhh
Q 000167 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADAD-----AGRY 90 (1972)
Q Consensus 16 l~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~-----~~~~ 90 (1972)
+..-+.|.+=..+..|++.+....... +.-+-......+++..++...|..++..++-+|..+-...+.+ +...
T Consensus 295 li~Ll~s~~~~~q~~A~~al~~aa~~~-~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 295 ILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTTSH-HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCc-HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhc
Confidence 456677888888999999888865320 0001111223577888899999999998877776654322111 1111
Q ss_pred -hHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhC
Q 000167 91 -AKEVCDAIAAKCLTG--RPKTVEKAQAVFMLWVELEA-------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG 160 (1972)
Q Consensus 91 -~~~v~~~LveK~l~~--k~~~k~~a~~~ll~~~E~~~-------~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG 160 (1972)
...+++.++.-..+. .+..+..|.+.|.-+..-.. -..++..|...+++.++.++.+++.+|.++...+-
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 234555555443333 67889999998776653321 13566777778888999999999999999877331
Q ss_pred CC-ccC------------------------hh---------HHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhH
Q 000167 161 AK-IIP------------------------PK---------RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT 206 (1972)
Q Consensus 161 ~~-~~~------------------------~k---------~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~ 206 (1972)
.. .++ .+ ..++.|..++.+.++.||+.|..++..|. |....+.
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~ 530 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC---GLKELRG 530 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHH
Confidence 11 000 01 14566666666666677666666655553 2210111
Q ss_pred HHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCc
Q 000167 207 ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 286 (1972)
Q Consensus 207 ~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~ 286 (1972)
.+. . .+ -++
T Consensus 531 ~Vv------------------------------------------~---~G--------------------------aip 539 (810)
T 3now_A 531 KVV------------------------------------------Q---EG--------------------------GVK 539 (810)
T ss_dssp HHH------------------------------------------H---TT--------------------------HHH
T ss_pred HHH------------------------------------------H---CC--------------------------CHH
Confidence 110 0 00 001
Q ss_pred ccchhhhhccCChHHHHHHHHHHHHHhc--CCCCCCCC--hHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHH---hhh
Q 000167 287 KSGFWEGVKATKWSERKDAVAELTKLAS--TKRIAPGD--FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARG---LRT 358 (1972)
Q Consensus 287 ~~~f~~~l~s~kWkeR~eaL~~L~~l~~--~~ki~~~~--y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~---L~~ 358 (1972)
-+...+.+..-.-|+.|...|..|+. .|...-.. ..+.++.|...+. |.+......|+.+|..|+.+ .+.
T Consensus 540 --~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 540 --ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp --HHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred --HHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 23333444455667888888888763 33321111 1346777777777 55655667899999999864 222
Q ss_pred chhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000167 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 359 ~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (1972)
.+-. ...+|.|...+.+.+..|+.++..++..++.+ .... ...++.+...+++.+..+|.+++..|..+..
T Consensus 618 ~Ii~--aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 618 RIIK--EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHH--TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 2211 24689999999999999999999999988753 0001 1356777778889999999999988888765
Q ss_pred hcChhHHHHhh--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 433 TSSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 433 ~~~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.++ ......+ ...+|.|+.+|.+.+.++|..|..++..+..
T Consensus 695 ~s~-~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 695 VSV-KCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HCH-HHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred CCH-HHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 432 2222333 3588999999999999999999999988875
No 60
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.07 E-value=2.4e-05 Score=88.08 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=136.0
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCC-CCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTK-RIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~-ki~~~~-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (1972)
-+...+.+.++..|.+|+..|..++... .....- -..+++.|.+.+.+.+..++..|+.+|+.|+.+-...-... -.
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 4666678999999999999999988432 100000 01367788888998899999999999999985332211111 23
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~-----l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1972)
..+|.|+..+.+..+.++..+..+|..+....... -..+++.+...+++.++.+|..++..|..+....+.. ..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~ 174 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-KQ 174 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-HH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH-HH
Confidence 57899999999999999999999998886430000 1236788889999999999999999999877643222 11
Q ss_pred Hh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 441 KV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 441 ~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
.. -...++.|.+++.+.+++||..|..+|..+.
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 11 2357899999999999999999999998764
No 61
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.01 E-value=0.0001 Score=87.12 Aligned_cols=162 Identities=15% Similarity=0.044 Sum_probs=122.8
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH-HhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k-~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
.+...+.+.+|..|..|+..|..+... ......+++.|.. .++|.+..|+..|+.+++.++.+.. .+...+
T Consensus 58 ~L~~~l~d~~~~vR~~A~~aL~~l~~~----~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~ 129 (280)
T 1oyz_A 58 LAIEFCSDKNYIRRDIGAFILGQIKIC----KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKI 129 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHSCCC----TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHH
Confidence 355667888999999999988776432 1234566777764 4569999999999999999876432 345578
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000167 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1972)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1972)
++.++..+.+..+.||.++..+|..+. -...++.+...+++.++.+|..++..|..+ ... -+.++
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~--------~~~~~ 194 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVIN------DKATIPLLINLLKDPNGDVRNWAAFAININ-KYD--------NSDIR 194 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHHHH-TCC--------CHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-ccC--------cHHHH
Confidence 899999999999999988877776442 234778888889999999999998888664 211 14567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
+.+.+++.|.++.||..|..+|+.+.
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999997654
No 62
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.99 E-value=4.4e-05 Score=88.54 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=137.0
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCC-C-CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh-
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTK-R-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS- 364 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~-k-i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~- 364 (1972)
+.|++.+.+.+...|..|+..|..++... . ...---..+++.|.+.+.+.+..+...|+.+|+.|+.+-...-...+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46888899999999999999998765321 0 00000013667888889988899999999999999864322212222
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000167 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1972)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1972)
...+|.|+..+++....++..+..+|..+... ... ..+++.|...+++.++.+|..++..|..+.... ..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 24899999999999999999999999888653 111 136788999999999999999999998865433 22
Q ss_pred HHHHh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 438 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 438 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
..... -..++|.|+..+.+.+++||..|..+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 22211 2568899999999999999999999998886
No 63
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.99 E-value=0.1 Score=72.38 Aligned_cols=287 Identities=16% Similarity=0.168 Sum_probs=161.8
Q ss_pred hhhHHHHHHHHHHHhhcCh------------hHHHHHHHHhh----hhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHH
Q 000167 697 KTRAHAMKCLTTFSEAVGP------------GFIFERLYKIM----KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (1972)
Q Consensus 697 K~r~~a~~~L~~l~e~~~~------------~~vl~~l~~~l----~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li 760 (1972)
+..+++.-+|.+++|.+.. ..+++-+...+ ....+|+|+..+++.+.+.-+-|....--+.+++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L 537 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 3578888888899887542 13443333322 2267899999999999888777765433456777
Q ss_pred HHHHh-cCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCC
Q 000167 761 DFCKD-TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1972)
Q Consensus 761 ~~l~~-~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~ 839 (1972)
..+.. .|+.++++.||.+|..++..+-+..++.+.+|++ .+++.+..-+.... + |...
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~----~il~~l~~lL~~~~-~----~~~~------------ 596 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE----SSLAMLGDLLNISV-S----PVTD------------ 596 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH----HHHHHTTGGGCCCC-C----CCCC------------
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH----HHHHHHHHhhcCcC-C----CCCc------------
Confidence 77655 2488999999999999999998887766655543 34444444332110 0 0000
Q ss_pred CCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHcccc--CCCCChhhHHHHHH----hcccc-----ch
Q 000167 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR--IQPAGTGELFGGLR----GRLYD-----SN 908 (1972)
Q Consensus 840 ~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~--I~~~~~~eL~~~L~----~~L~D-----sN 908 (1972)
.|. | ..+.+++. ++.....+..-.+.++.++...... -+...+..++..|. ..+.. .+
T Consensus 597 --~~~-~-----~~~~~~~~---~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~ 665 (980)
T 3ibv_A 597 --MDA-P-----VPTLNSSI---RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALEN 665 (980)
T ss_dssp ----C-S-----SCCHHHHH---HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CH
T ss_pred --ccc-c-----ccchhhhc---ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccH
Confidence 000 0 00011111 1224455566666777666532100 00011223333322 22211 11
Q ss_pred HHHHHHHHHHHHHHHHHcChh------hHhhhhhHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHH
Q 000167 909 KNLVMATLITLGAVASAMGPA------VEKSSKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTT 978 (1972)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~------~~~~~~~llp~ll~~L~--D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~ 978 (1972)
..-....+.+++.++++.... +......+++.++..|. .+...||+++..++..++..+| +..++|.+.+
T Consensus 666 ~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~ 745 (980)
T 3ibv_A 666 IISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLIS 745 (980)
T ss_dssp HHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHH
Confidence 112234466778888776321 44455667777766565 4668899999999999999987 4556776666
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHH
Q 000167 979 ALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKP 1016 (1972)
Q Consensus 979 ~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~p 1016 (1972)
.|-.. +.+..=.+.+..+...+...+.. +.+..++.|
T Consensus 746 ~ll~~-~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~ 784 (980)
T 3ibv_A 746 ILLNS-IDMNELVDVLSFISQLIHIYKDNMMEITNRMLPT 784 (980)
T ss_dssp HHHHH-CCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHH
T ss_pred HHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65421 12333456666666666666543 223444444
No 64
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.96 E-value=0.00046 Score=73.17 Aligned_cols=198 Identities=20% Similarity=0.311 Sum_probs=145.6
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Q 000167 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (1972)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (1972)
.-+.+.-|..++.|+.-+..++..- +.-|..++..|.-.+. +..+..-.+-...+|.+|..=. ..++.++|.
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~~---~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P----e~v~~vVp~ 111 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKTR---EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP----ELVKSMIPV 111 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHH
T ss_pred HHhccHHHHHHHhHHHHHHHHHHHh---HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----HHHHhhHHH
Confidence 3457889999999999998887521 2346667777766666 7777776666788888776321 347789999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000167 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1972)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (1972)
++..+.-..+.++-...-+|..++..+...+..++.+|..-+.+||-.=|..+++|+..+=+++ .++...++|-+
T Consensus 112 lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-----~~yv~PfLprL 186 (253)
T 2db0_A 112 LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-----FKYVNPFLPRI 186 (253)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-----HHHHGGGHHHH
T ss_pred HHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-----ccccCcchHHH
Confidence 9999877777788888888999887634446788999999999999999999999987643322 24567788999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHhCc--hhHHHhHhhcc---HHHHHHHHHHHh
Q 000167 451 MECLNDGTPEVRDAAFSVLAAIAKSVGM--RPLERSIEKLD---DVRRNKLSEMIA 501 (1972)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~l~~~~ge--~~~~~~l~~Ld---~~~~kkI~e~~~ 501 (1972)
..+|.|.|.-||..|.++|+.+...-.. +.+..-+..++ +.-++++++.+.
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999999988854331 12333334443 345666766654
No 65
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.84 E-value=0.00037 Score=80.30 Aligned_cols=189 Identities=17% Similarity=0.123 Sum_probs=139.6
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (1972)
.+...+.+.+...|..++..|..++.. +.....- -...++.|...+.+.+..++..|+.+++.|+..-....... -.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 455667788899999999999998753 2110000 01357788888888899999999999999985322111111 23
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1972)
..+|.|++.+++..+.++..+..+|..+... .... ..+++.+...+.+.++.+|..++..|..+.... +...
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 205 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAI 205 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHH
Confidence 5799999999999999999999999888653 1000 137788999999999999999999998876532 2222
Q ss_pred HHh-hhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch
Q 000167 440 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 440 ~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
... -..+++.+...+.+.+++||..|..+|+.+....+..
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 221 2457899999999999999999999999999876654
No 66
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.83 E-value=0.1 Score=72.32 Aligned_cols=611 Identities=10% Similarity=0.055 Sum_probs=308.2
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccc---CHHHHHHHHHHHHHHHHHhhhc----hhhhhhhHHH
Q 000167 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV---NIAVAVEAIQAIGNLARGLRTH----FSGSSRFLLP 369 (1972)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~---N~~V~~~A~~~l~~La~~L~~~----f~~~~~~llp 369 (1972)
.+-..|++|.+-|..+-+.|. . ......++.+. +..+..-|++++....+.+... -..+++..+-
T Consensus 20 sd~~~r~~A~~~L~~~q~sp~-----a---w~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll 91 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSST-----G---WKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVW 91 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHSTT-----H---HHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChh-----H---HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHH
Confidence 467889999998888766542 2 22333344432 7889999999999988866554 3444554444
Q ss_pred HHHHHhc--cCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHhcC----------
Q 000167 370 VLLEKLK--EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVP-LVRSLTLNWVTFCIETSS---------- 435 (1972)
Q Consensus 370 ~LL~klk--dkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~l~~Knp-~vR~~~l~~L~~~l~~~~---------- 435 (1972)
.++.... ...+.|+..+..++..++.+ ....-..+++++...++..++ ..-...+.+|..+-+...
T Consensus 92 ~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~ 171 (980)
T 3ibv_A 92 SYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQ 171 (980)
T ss_dssp HHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHH
Confidence 4555543 34578999999999999987 123345788888888876554 222222333321112210
Q ss_pred -------hhHHHH-hhhhHHHHHHH----HhcCCChHHHHHHHHHHHHHHHHhCchh------HHHhHhhc-cHHHHHHH
Q 000167 436 -------KAAVLK-VHKDYVPICME----CLNDGTPEVRDAAFSVLAAIAKSVGMRP------LERSIEKL-DDVRRNKL 496 (1972)
Q Consensus 436 -------~~~l~~-~l~~l~p~l~k----~l~Ds~~~VR~aA~~~l~~l~~~~ge~~------~~~~l~~L-d~~~~kkI 496 (1972)
+..+.. .++.+.+.+.. +.+..+++++..+.+|+..+..-+.-.. +.-++.-| ++.-+..-
T Consensus 172 ~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~~~~r~~A 251 (980)
T 3ibv_A 172 IQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQIEELRCAA 251 (980)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTSHHHHHHH
T ss_pred HhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCChHHHHHH
Confidence 001111 12333444444 4444788999898888888876443211 11122222 11112211
Q ss_pred HHH----HhcCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000167 497 SEM----IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQ 572 (1972)
Q Consensus 497 ~e~----~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~v~~~~~s~~~~~~P~~~~~~s~k~~~~k~g~~~~~~~~~ 572 (1972)
-++ +.+... + . .+..-..... -.+. -
T Consensus 252 ~ecL~ei~~k~~~--------------------~---~---~k~~li~~l~-L~~~--------------------~--- 281 (980)
T 3ibv_A 252 CETMTEIVNKKMK--------------------P---L---EKLNLLNILN-LNLF--------------------F--- 281 (980)
T ss_dssp HHHHHHHHHSCCC--------------------H---H---HHHHHHHHHH-HHHH--------------------H---
T ss_pred HHHHHHHHHcCCC--------------------h---h---hHHHHHHHHh-HHHH--------------------H---
Confidence 222 111100 0 0 0000000000 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHhhcc---CcHHHHHhhhcCC-h---HHHHHHHHHHHHHHHhccccchhHHHHHHH
Q 000167 573 ETSKLTEAPEDVEPSEMSLEEIESRLGSL---IPADTVGQLKSAV-W---KERLEAISSLRQQVEAVQNLDQSVEILVRL 645 (1972)
Q Consensus 573 ~~s~~~~~~~~~~~~~~s~ee~e~~~~~l---l~~~l~~~L~s~~-W---k~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~ 645 (1972)
..... ..-. .|....+..+ ++.+++.. .+.. | ..+..+...+. ...+.+++.
T Consensus 282 --~~l~~-------~~~D-~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~----------~ll~~lL~~ 340 (980)
T 3ibv_A 282 --SKSQE-------QSTD-PNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLY----------NLFPYLIRY 340 (980)
T ss_dssp --CC------------CC-HHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHH----------HTHHHHHHH
T ss_pred --HHHhc-------cccc-HHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHH----------HHHHHHHHH
Confidence 00000 0000 1111111111 12222222 1111 1 11111222221 123334444
Q ss_pred HhcCCCCccchHHHHHHHHHHHHHHHHHc---CC---Cc---hhhHHHHHHHHHhhhcc-------h-----------hh
Q 000167 646 VCMLPGWSEKNVQVQQQVIEVINYLAATA---TK---FP---KKCVVLCLLGISERVAD-------I-----------KT 698 (1972)
Q Consensus 646 L~~~p~~~DsN~qV~~~~Le~l~~l~~~~---~~---~~---~~~~~~il~~LveKlgd-------~-----------K~ 698 (1972)
+.. ...-|...++++|..++... +. .. +..+..+++.++.|+.= . -.
T Consensus 341 ~~~------~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~ 414 (980)
T 3ibv_A 341 LSD------DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEM 414 (980)
T ss_dssp HTC------SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHH
T ss_pred hCC------CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHH
Confidence 332 12355666777777666432 11 11 23455566666666531 0 13
Q ss_pred hHHHHHHHHHHHhhcChhHHHH----HHHHhhh------hCCChHHHHHHHHHHHHHHHHhCCCC-------CChhhHHH
Q 000167 699 RAHAMKCLTTFSEAVGPGFIFE----RLYKIMK------DHKNPKVLSEGILWMVSAVEDFGVSH-------LKLKDLID 761 (1972)
Q Consensus 699 r~~a~~~L~~l~e~~~~~~vl~----~l~~~l~------~~KnpKv~~e~l~~L~~~i~~fG~~~-------l~~k~li~ 761 (1972)
|.... .|...+...+++.++. .+...+. .+.+|+.+..++-.|..+-+.....+ -.+..+++
T Consensus 415 Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ 493 (980)
T 3ibv_A 415 RKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ 493 (980)
T ss_dssp HHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH
T ss_pred HHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHH
Confidence 55555 7777888888888877 3333221 13468888888888776655322101 01234666
Q ss_pred HHHhcCCC-----CCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCC
Q 000167 762 FCKDTGLQ-----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1972)
Q Consensus 762 ~l~~~gL~-----~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s 836 (1972)
++..+ +. +.+|.||..+..+++..+.|+...- .|+ |.
T Consensus 494 ll~~l-l~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l----~~-------------------------------- 535 (980)
T 3ibv_A 494 ILALV-TTSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAI----PA-------------------------------- 535 (980)
T ss_dssp HHHHH-HHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTH----HH--------------------------------
T ss_pred HHHHH-HhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhH----HH--------------------------------
Confidence 66554 43 7889999999999999988874210 011 11
Q ss_pred CCCCCCCCCCcccccccccHHHHH--hcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc----ch--
Q 000167 837 VSSGGSDGLPREDISGKFTPTLVK--SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD----SN-- 908 (1972)
Q Consensus 837 ~~~~~~d~lprvdIs~~l~~~ll~--~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D----sN-- 908 (1972)
+...++. ++.+.+-++|..|...+..+++.+.+.+.+. ..+++..|...|.- .+
T Consensus 536 -----------------~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~-~~~il~~l~~lL~~~~~~~~~~ 597 (980)
T 3ibv_A 536 -----------------LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY-TESSLAMLGDLLNISVSPVTDM 597 (980)
T ss_dssp -----------------HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS-HHHHHHHTTGGGCCCCCCCCC-
T ss_pred -----------------HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHhhcCcCCCCCcc
Confidence 1122334 4555666678888889999999887777665 47788888776641 00
Q ss_pred ---------------HHHHHHHHHHHHHHHHHcCh---hhHhhhhhHHHHHHHHhC----CCc----HH-HHHHHHHHHH
Q 000167 909 ---------------KNLVMATLITLGAVASAMGP---AVEKSSKGVLSDILKCLG----DNK----KH-MRECTLTVLD 961 (1972)
Q Consensus 909 ---------------~~V~~~Al~~l~~La~alg~---~~~~~~~~llp~ll~~L~----D~k----~~-Vr~Aa~~aL~ 961 (1972)
.+-...-.+++|.|+..++. .-..|+..++++++..+. ..+ .. -......+++
T Consensus 598 ~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~ 677 (980)
T 3ibv_A 598 DAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIG 677 (980)
T ss_dssp -CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHH
T ss_pred cccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence 11233356778888877764 234688888888776653 111 11 1123345556
Q ss_pred HHHHhcC------------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcC-C-CCHH
Q 000167 962 AWLAAVH------------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT-D-KSSD 1027 (1972)
Q Consensus 962 ~i~~~~~------------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~-D-~~~d 1027 (1972)
.+++-.. +..+++.+...|..=..+..+|..+...+.+.+...+. ++.+.+.+++..|- + ...+
T Consensus 678 ~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~--~~~p~lp~~i~~ll~~~~~~e 755 (980)
T 3ibv_A 678 NFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP--DMLPKVPQLISILLNSIDMNE 755 (980)
T ss_dssp HHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH--HHTTTHHHHHHHHHHHCCTTT
T ss_pred HHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHHhcCCHHH
Confidence 6655431 11233344444442111467888888888877765543 24444555444332 2 1222
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHhc
Q 000167 1028 VRKAAEACIVEILRAGGQETIEKNLK 1053 (1972)
Q Consensus 1028 VR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1972)
.. ..-..++.++..+|.+ +.+.+.
T Consensus 756 ~~-~fL~l~~qli~~f~~~-~~~~l~ 779 (980)
T 3ibv_A 756 LV-DVLSFISQLIHIYKDN-MMEITN 779 (980)
T ss_dssp HH-HHHHHHHHHHHHTTTT-SHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHH-HHHHHH
Confidence 22 2234556666667766 444443
No 67
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.83 E-value=0.086 Score=73.23 Aligned_cols=198 Identities=11% Similarity=0.055 Sum_probs=140.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHhhhc-hhhhhhhHHHHHHHH
Q 000167 298 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEK 374 (1972)
Q Consensus 298 kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D--~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp~LL~k 374 (1972)
.|+.=++.|..+..+... .-..-++..|.+.+.+ .+=.....++-|+|.++.++... ..+++..++|.|+..
T Consensus 429 ~f~~~Rd~L~~l~~l~~~-----~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l 503 (1023)
T 4hat_C 429 LYKSEREVLVYLTHLNVI-----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1023)
T ss_dssp HHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHH-----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHh
Confidence 354334666555554321 1122344555555653 56778888999999999998765 679999999999988
Q ss_pred hc-----cCcHHHHHHHHHHHHHHHHh---cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------
Q 000167 375 LK-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV------- 439 (1972)
Q Consensus 375 lk-----dkk~~V~~aa~~aL~al~~~---~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l------- 439 (1972)
+. |.|..|++.+.-++...... ....+..++..++.++...+|.+...++..+..+.+.+.....
T Consensus 504 ~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 504 CVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 75 46777776665555442221 1123667888888999888999999999999988887765422
Q ss_pred HHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchh-HHHhHhhccHHHHHHHHHHH
Q 000167 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMI 500 (1972)
Q Consensus 440 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~-~~~~l~~Ld~~~~kkI~e~~ 500 (1972)
.+++..++..+..++++-.+.-+....++++.+....+... ...++..|-+.-..+..+.+
T Consensus 584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~ 645 (1023)
T 4hat_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIV 645 (1023)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHH
Confidence 35778888889999999999999999999999999998654 55577666554444555544
No 68
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.83 E-value=0.00016 Score=83.39 Aligned_cols=184 Identities=20% Similarity=0.170 Sum_probs=136.4
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (1972)
.+...+.+.++..|..|+..|..++....-....+ ..+++.|.+.+.+.+..+...|+.+++.|+..-...-... -.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 85 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 85 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 46677888889999999999999885331000000 1467888889998889999999999999986421111111 22
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1972)
..+|.++..+++....++..+..+|..+... .... ..+++.|...+++.++.+|..++..|..+.... +...
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~ 163 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAI 163 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHH
Confidence 5799999999999999999999999988742 1010 146888899999999999999999999865533 2211
Q ss_pred HH-hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 440 LK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 440 ~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.. .-..++|.++.++.+.+++||..|..+++.+..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 11 125588999999999999999999999988874
No 69
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.78 E-value=6.2e-05 Score=87.31 Aligned_cols=184 Identities=12% Similarity=0.095 Sum_probs=135.7
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhh-hh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 365 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 365 (1972)
.+...+.+.++..|..|+..|..++.. +.....- -...++.|...+.+.+..++..|+.+|+.|+..-....... -.
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 466667788899999999999998752 2110000 01367788888998899999999999999986543331222 23
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000167 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1972)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~-l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1972)
..+|.|+..+.+....|+..+..+|..+... ... . ..+++.+...+++.++.+|..++..|..+... .+...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CHHHH
Confidence 5899999999999999999999999888653 100 0 24578888999999999999999999987643 22222
Q ss_pred HHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 440 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.... ..+++.+..++.+.+++||..|..+|+.+..
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 2222 3488999999999999999999999986643
No 70
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.73 E-value=7.5e-05 Score=84.03 Aligned_cols=184 Identities=17% Similarity=0.215 Sum_probs=131.7
Q ss_pred cHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh
Q 000167 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1972)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (1972)
.+-|...+.+.++.+|.+|+..|..+..........-.-...++.|...|.+.+..++..|+.+|+.|+..-........
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 45677888999999999999999998742110000000024678888889999999999999999998743211112222
Q ss_pred -hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000167 935 -KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1972)
Q Consensus 935 -~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1972)
...+|.++..|.+.+..+|..|..+|..+..... -..+++.+...|.+. ++.+|..++..|.......+.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCcH
Confidence 3478999999999999999999999998875321 133678888888876 688999998888766543221
Q ss_pred CC-Ch--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000167 1007 FP-DA--AHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 1007 ~~-~~--~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
.. .+ ...+..+...+.+.+.+||+.|..+|..+.
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 10 01 124556888899999999999999998764
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.48 E-value=0.0059 Score=64.88 Aligned_cols=167 Identities=14% Similarity=0.179 Sum_probs=116.4
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh----ccccchHHHHHHHHHHHHHHHHHcChh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG----RLYDSNKNLVMATLITLGAVASAMGPA 929 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~----~L~DsN~~V~~~Al~~l~~La~alg~~ 929 (1972)
+.++++..+.|.-|.+|++|+.-+-.++.+ +.++...+.. .+.-+ +|+-.-++++.++|.-
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---------~~el~epl~~kL~vm~~ks------EaIpltqeIa~a~G~l 97 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKT---------REDLYEPMLKKLFSLLKKS------EAIPLTQEIAKAFGQM 97 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---------CGGGHHHHHHHHHHHHHHC------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhhc------ccCchHHHHHHHHhHH
Confidence 556778889999999999999998888753 2444433332 22111 2233334445544432
Q ss_pred --hH-hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC
Q 000167 930 --VE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1972)
Q Consensus 930 --~~-~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~ 1004 (1972)
.. ..++.++|.++..+.-..+.+|--..-+|..++...+ +..++..+...+.++ +-.-|..+|+|+.. .
T Consensus 98 a~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk--d~~Dkl~aLnFi~a----l 171 (253)
T 2db0_A 98 AKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK--NREDKLTALNFIEA----M 171 (253)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHHT----C
T ss_pred HHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHH----H
Confidence 22 3577899999999877777788888888999988875 455666777777766 56678899988863 2
Q ss_pred CCC--CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1005 SGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1005 ~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
+.. ..+.+.++-++..|.|++.-||..|.++|..+..
T Consensus 172 Gen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 172 GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp CTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred hccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHH
Confidence 221 1345666669999999999999999999987653
No 72
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.47 E-value=0.0012 Score=78.66 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHH-HhcccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHHHHHHH
Q 000167 300 SERKDAVAELTKLASTKRIAPGDF--TEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEK 374 (1972)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k-~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~k 374 (1972)
.+|..|++.|..++...... .++ ...++.|.. .+.+.+..|+..|+.+|+.++.+-. ....++ ...+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHH
Confidence 46888888888877532100 011 123456666 8888899999999999999996421 112221 2588999999
Q ss_pred hc-cCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHH
Q 000167 375 LK-EKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYV 447 (1972)
Q Consensus 375 lk-dkk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~ 447 (1972)
++ +.+..|+..+.-||..++.+..... ...++.|...|++.++.+|..++..|..+....+ ....... .-++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCH
Confidence 98 4588999999999999886410111 1356788888999999999999999998776532 2222222 4588
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000167 448 PICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 448 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
|.|+.+|...++.||+.|..+++.+...
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999865
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.39 E-value=0.0027 Score=70.62 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=139.9
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
++.+-+.+++=+.-..|++.|..|+.+-.+.+.+|.-+..+|+..+++.|-.+...|+..++.+ ......+.++
T Consensus 79 ~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~ 152 (265)
T 3b2a_A 79 VFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVR 152 (265)
T ss_dssp HHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHH
Confidence 5666667777777778999999998777788889999999999999999998988888888777 2333456677
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~--~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1972)
..++..++.++..|..++..++..+..++ ...+..|+..|..-+++++|.++.-++..+.+++...-+..+...+..+
T Consensus 153 ~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 153 TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKI 232 (265)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHH
Confidence 77777778999999999999999998761 1337899999999999999999999999999988764333333333444
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHHHH
Q 000167 447 VPICMECL-NDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 447 ~p~l~k~l-~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
...+.... -...|.+|+.|+.....+-.
T Consensus 233 ~~~v~~l~~~~~~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 233 SRIVDGLVYREGAPIIRLKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 44444444 68899999999877655543
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.24 E-value=0.0055 Score=68.15 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=142.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~ 936 (1972)
.++..+.|+|-.++..++..+++++..+++......+.++++.+...+.+.|-.|...|++|++.|.....-.=+.| .-
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y-~K 115 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF-LK 115 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH-HH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH-HH
Confidence 46677899999999999999999998754444443468899999999999999999999999999987765443343 45
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000167 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (1972)
Q Consensus 937 llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~-l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (1972)
+..++.....+++..++..+...++.+ ..+. ...+...+...+.++ +++++...+..+.........+..+..++.
T Consensus 116 l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~ 192 (265)
T 3b2a_A 116 AAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILD 192 (265)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 677888888899999999999999998 4444 577888888888655 799999999998876554443444566666
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000167 1016 PASIAMTDKSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1972)
-+...|...++.+++-|-.++..+..
T Consensus 193 eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 193 EIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp THHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 67778888899999999887776643
No 75
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.93 E-value=0.003 Score=77.70 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=102.3
Q ss_pred cchhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhH
Q 000167 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1972)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (1972)
+.+...+-+.+|..|..|.-.|+.+++......+-. ...|. -.|++++..||- .+|.-|+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLAL---DRFGDYV--- 236 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILVT---DKFNDFV--- 236 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHHH---BCCBBCS---
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHHh---ccccccc---
Confidence 345566789999999999999999884221111100 22232 445555555542 2333332
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000167 368 LPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1972)
Q Consensus 368 lp~LL~klkd-kk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1972)
.| -...|||.+.++|.++ .+-... -.++..+...+.+..|++|.+.+.-|..+ ...+.. ++.+
T Consensus 237 --------SDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~V 300 (800)
T 3oc3_A 237 --------DDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGL 300 (800)
T ss_dssp --------SSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHH
T ss_pred --------cCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHH
Confidence 22 2457999999999999 662222 35666666667889999999988887765 222222 6889
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 447 VPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 447 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
+++++.+|.|.+.+||..|+++|.-+.
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999999999999999999997766
No 76
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.90 E-value=0.4 Score=62.07 Aligned_cols=374 Identities=13% Similarity=0.045 Sum_probs=203.3
Q ss_pred hhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh-h-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---hhh---
Q 000167 55 PLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-A-KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---EAV--- 126 (1972)
Q Consensus 55 ~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~-~-~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~---~~~--- 126 (1972)
+.+-+++...|..+|..|..+|..+...... .... + ...+|.||+-.-...+.+++.|..+|..+... +.-
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 3445667888999999999988766543222 1111 1 24678999874346899999999988888753 111
Q ss_pred --hhHHHHHHHHhhc-CChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhh------------------cCCChhHH
Q 000167 127 --DVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF------------------DHQDQNVR 185 (1972)
Q Consensus 127 --~~v~~~L~~~~~~-KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll------------------~~~d~~VR 185 (1972)
...++.|+..+.+ ..+.++..+..+|..+-...-.+..=++.-++.|..++ ...|..|+
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 2346666777765 56777777776666543311111100122344555543 22367999
Q ss_pred HHHHHHHHHHHHhhCCchhhHHHh--hhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhh---hhhccccCCCCCCCC
Q 000167 186 ASSKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL---GQELISEDVGPGPSE 260 (1972)
Q Consensus 186 ~~a~~l~~ely~~lG~~~l~~~l~--~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~---~~~a~~~~~~~~~~~ 260 (1972)
..|..++..|-..- ++ .+..+. ..+-+..+.-|....++.. +.........-.. ......+..
T Consensus 210 ~nAa~~L~NLs~~~-~~-~R~~i~~~~Gli~~LV~~L~~~~~~~~----~~~~~~enav~aL~NLs~~~~~e~~------ 277 (584)
T 3l6x_A 210 TNTAGCLRNVSSER-SE-ARRKLRECDGLVDALIFIVQAEIGQKD----SDSKLVENCVCLLRNLSYQVHREIP------ 277 (584)
T ss_dssp HHHHHHHHHHTSSC-HH-HHHHHHHSTTHHHHHHHHHHHHHHTTC----CSCHHHHHHHHHHHHHHTTHHHHST------
T ss_pred HHHHHHHHHHhcCC-HH-HHHHHHHcCCcHHHHHHHHHHhhcccC----ccHHHHHHHHHHHHHhhcccccccc------
Confidence 99988887775321 11 112221 2333344444433322211 1000000000000 000000000
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHhc-ccC
Q 000167 261 ESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLIT-DVN 338 (1972)
Q Consensus 261 ~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k-i~~~~y~~l~~~L~k~l~-D~N 338 (1972)
..+.| .+. .+ . +........++ +..---..+++.|..++. ..+
T Consensus 278 --------~~~~~--~~~------~~-~------------------~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~ 322 (584)
T 3l6x_A 278 --------QAERY--QEA------AP-N------------------VANNTGTSPARGYELLFQPEVVRIYISLLKESKT 322 (584)
T ss_dssp --------TCCC-----------------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred --------chhhh--hhh------cc-c------------------ccccccccCchhHHHHhcccHHHHHHHHHccCCC
Confidence 00001 000 00 0 00000111111 100001256677778886 457
Q ss_pred HHHHHHHHHHHHHHHHHhh---hchhhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH-----hHHHHH
Q 000167 339 IAVAVEAIQAIGNLARGLR---THFSGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-----DVVEDV 408 (1972)
Q Consensus 339 ~~V~~~A~~~l~~La~~L~---~~f~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~-----~il~~l 408 (1972)
..+...|+.+|..|+.+-. ..+...+ ...+|.|++.+......|+.++..||..+... .... .+++.+
T Consensus 323 ~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~~I~~g~ip~L 400 (584)
T 3l6x_A 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD--ARNKELIGKHAIPNL 400 (584)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hhHHHHHHhCCHHHH
Confidence 8899999999999986421 1222222 35699999999999999999999999999875 2222 356777
Q ss_pred HHHhhcC--------ChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHhC
Q 000167 409 KTSVKNK--------VPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 409 ~~~l~~K--------np~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds--~~~VR~aA~~~l~~l~~~~g 477 (1972)
...|.+. +..+...++..|..++...+.. ..... ...+|.|+.++.+. .+.++++|..+|..+ +.
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl---~~ 476 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI---WG 476 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH---HT
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH---Hc
Confidence 7777654 3567778888887766543322 11111 45789999999876 788888887777655 44
Q ss_pred chhHH
Q 000167 478 MRPLE 482 (1972)
Q Consensus 478 e~~~~ 482 (1972)
.+.+.
T Consensus 477 ~~elr 481 (584)
T 3l6x_A 477 YKELR 481 (584)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 54443
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.76 E-value=0.0073 Score=71.92 Aligned_cols=169 Identities=13% Similarity=0.124 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHh-ccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHHHHH
Q 000167 868 KVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDIL 942 (1972)
Q Consensus 868 k~R~eale~l~~ll~~a~--~~I~~~~~~eL~~~L~~-~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp~ll 942 (1972)
..|..|++.|..++..-. ..+.. .| .+..|.. .|...+..|+..|+.+|+.++.. .+.....+ ...+|.++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~--~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQ--LS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH--TT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHH--cC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHH
Confidence 468889999998885210 11111 13 3456666 88889999999999999999853 22233332 25889999
Q ss_pred HHhC-CCcHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC-CCh--h
Q 000167 943 KCLG-DNKKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA--A 1011 (1972)
Q Consensus 943 ~~L~-D~k~~Vr~Aa~~aL~~i~~~~~--l-----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~-~~~--~ 1011 (1972)
..|. +.+..+|..|.-||..++.... . ...+|.|...|.++ ++.++..++..|.......+.. ..+ .
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 9998 4578899999999999886432 1 23677888888876 6889998887776655442211 011 2
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000167 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1972)
Q Consensus 1012 ~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1972)
..+++++..|.+.+.+||..|..+|..+...
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 3566799999999999999999999988865
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.67 E-value=0.00022 Score=74.16 Aligned_cols=119 Identities=15% Similarity=0.069 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH
Q 000167 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404 (1972)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~i 404 (1972)
.-...|...++|.+..++..|+.+++.+.. + -++.|++.++|..+.||..+..+|..+ .-...
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-------~----~~~~L~~~L~d~~~~vR~~A~~aL~~~------~~~~a 74 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD-------E----AFEPLLESLSNEDWRIRGAAAWIIGNF------QDERA 74 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS-------T----THHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-------h----HHHHHHHHHcCCCHHHHHHHHHHHHhc------CCHHH
Confidence 445566777888887788888777764421 1 158899999999999998877766543 22567
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 000167 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1972)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1972)
++.+...+++.+|.||..++..|..+- -+..++.|.+.+.|.++.||.+|..+|+.
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 888889999999999999998887641 13457889999999999999999998864
No 79
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.29 Score=64.63 Aligned_cols=362 Identities=12% Similarity=0.081 Sum_probs=197.1
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhccccc----hhHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCch
Q 000167 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1972)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~----~~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (1972)
+.+...+.+ -..|.-|.-.|.++....+... .-.+.+.++|.. .....+..+++.|.++--. +..-.
T Consensus 299 ~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~------~~~~~~~~AvEgLaYLSl~-~~VKe 369 (778)
T 3opb_A 299 QLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISR------RIVPKVEMSVEALAYLSLK-ASVKI 369 (778)
T ss_dssp HHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTT------CCHHHHHHHHHHHHHHTTS-SHHHH
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHhCC-HHHHH
Confidence 444555544 2667777778877765532211 123445555532 1112367777777765421 21111
Q ss_pred h--hHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhcC--h-----hHHHHHHHHhhhhCCChHHHH---------HHHHH
Q 000167 680 K--CVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG--P-----GFIFERLYKIMKDHKNPKVLS---------EGILW 741 (1972)
Q Consensus 680 ~--~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~--~-----~~vl~~l~~~l~~~KnpKv~~---------e~l~~ 741 (1972)
. .-..++..|++-+.+.........++..+...+. + +.-+.+|.+++ +++.|+... +...+
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A-~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX-XXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------------CCTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc-cccCcccCcccccccchHHHHHH
Confidence 1 1134566666666542223344444544444221 1 12345555554 222333221 11111
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhh--hcccHHHHHHHHHHHhcCCCC
Q 000167 742 MVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFE 819 (1972)
Q Consensus 742 L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkp~ll~~Le~efek~~~~ 819 (1972)
-..++-+. .+++.+..+ +.+.++.+|..|.+++..|-.. +..+..+ .+--
T Consensus 449 ~~~~l~ea--------GvIp~Lv~L-l~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal----------------- 500 (778)
T 3opb_A 449 NEKYILRT--------ELISFLKRE-MHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAV----------------- 500 (778)
T ss_dssp HHHHTTTT--------THHHHHHHH-GGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHH-----------------
T ss_pred HHHHHHHC--------cCHHHHHHH-HcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCH-----------------
Confidence 22222222 356666677 8888999999999998888422 2233222 1111
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCH---HHHHHHHHHHHHHHHHccccCCC--CChh
Q 000167 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW---KVRLESIEAVNKILEEANKRIQP--AGTG 894 (1972)
Q Consensus 820 ~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~W---k~R~eale~l~~ll~~a~~~I~~--~~~~ 894 (1972)
+.++..+.+..- ..|..|...|..++...++.+.. ....
T Consensus 501 ------------------------------------~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~ 544 (778)
T 3opb_A 501 ------------------------------------KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL 544 (778)
T ss_dssp ------------------------------------HHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST
T ss_pred ------------------------------------HHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc
Confidence 123333322221 36888999999988654433311 1113
Q ss_pred hHHHHHHhccc-cchH-------------HHHHHHHHHHHHHHHHcCh---hhH-hhhh--hHHHHHHHHhCCCcHHHHH
Q 000167 895 ELFGGLRGRLY-DSNK-------------NLVMATLITLGAVASAMGP---AVE-KSSK--GVLSDILKCLGDNKKHMRE 954 (1972)
Q Consensus 895 eL~~~L~~~L~-DsN~-------------~V~~~Al~~l~~La~alg~---~~~-~~~~--~llp~ll~~L~D~k~~Vr~ 954 (1972)
+.++.|...|. +... .-...|+.+|+.||..-+. +.. ..+. ..+|.+...+.+.+..||.
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vrr 624 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHH
Confidence 67888888886 2221 1266889999999875432 332 2444 4789999999999999999
Q ss_pred HHHHHHHHHHHhcC-c-hhh-----------HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC----CChhhhHHHH
Q 000167 955 CTLTVLDAWLAAVH-L-DKM-----------VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPA 1017 (1972)
Q Consensus 955 Aa~~aL~~i~~~~~-l-~~l-----------l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl 1017 (1972)
+|..++..++.+.. + ..+ ++.+...+... +...|..+...|+..-...+.. -.....+.++
T Consensus 625 AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~L 702 (778)
T 3opb_A 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENA 702 (778)
T ss_dssp HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHH
Confidence 99999999996542 2 233 44566666654 6888888886666432222210 1112455667
Q ss_pred HhhcCC--CCHHHHHHHHHHHHHHHH
Q 000167 1018 SIAMTD--KSSDVRKAAEACIVEILR 1041 (1972)
Q Consensus 1018 ~~~L~D--~~~dVR~aA~~~l~~l~~ 1041 (1972)
+..|.| .+.++|..+..++.-+..
T Consensus 703 l~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 703 IQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 778888 899999999999998886
No 80
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.38 E-value=7.1 Score=55.35 Aligned_cols=378 Identities=12% Similarity=0.031 Sum_probs=192.0
Q ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHhhcC-hh-------HH----HHHHHHhhhhCC--C-hHHHHHHHHHHHHHHHHh
Q 000167 685 CLLGISERVADIKTRAHAMKCLTTFSEAVG-PG-------FI----FERLYKIMKDHK--N-PKVLSEGILWMVSAVEDF 749 (1972)
Q Consensus 685 il~~LveKlgd~K~r~~a~~~L~~l~e~~~-~~-------~v----l~~l~~~l~~~K--n-pKv~~e~l~~L~~~i~~f 749 (1972)
+++.++.-+.++.+|..|.+||..++.... ++ .+ +..++..+.... . ...-.+.+..+++++..+
T Consensus 250 ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~l 329 (1204)
T 3a6p_A 250 LLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCAL 329 (1204)
T ss_dssp HHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHH
Confidence 666667667788899999999999987432 11 00 123333321010 0 122233344444444444
Q ss_pred C-------------CCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcC
Q 000167 750 G-------------VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1972)
Q Consensus 750 G-------------~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~ 816 (1972)
| ...-.+..+++.+..+ +.|.+..|-..+...-..+.+.........+...-+.++..+...+.|.
T Consensus 330 g~~l~~l~~~~~~~~~~~~l~~~l~~lL~~-t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~ 408 (1204)
T 3a6p_A 330 GNQLCALLGADSDVETPSNFGKYLESFLAF-TTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKM 408 (1204)
T ss_dssp HHHHHHHHHTCSSCCCCTTHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhccccccChhHHHHHHHHHHHH-HhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 3 1122456788888887 8888877777777665555554321111122233344444444446777
Q ss_pred CCCCCCC-CCCccccccccCCCCCCCC-------------CC------CCcccccccccHHHHHhcC-------------
Q 000167 817 PFEGTVV-PKKTVRASESTSSVSSGGS-------------DG------LPREDISGKFTPTLVKSLE------------- 863 (1972)
Q Consensus 817 ~~~~~~~-p~r~~r~~~~~~s~~~~~~-------------d~------lprvdIs~~l~~~ll~~l~------------- 863 (1972)
.+..... |....- ..+. ++..+ +. +-+.+....+.+-+...+.
T Consensus 409 ~yp~~~~~~~~~~~-~~D~---d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~ 484 (1204)
T 3a6p_A 409 GFPSKTDSPSCEYS-RFDF---DSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSA 484 (1204)
T ss_dssp CCSSCCSSTHHHHH-HHHC---SSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------
T ss_pred cCccccCCcchhhh-hccc---CCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 5521000 000000 0000 00000 00 0000000000011111111
Q ss_pred ------------CCCHHHHHHHHHHHHHHHHHccccC-CCCChhhHHHHHHhcc---ccchHHHHHHHHHHHHHHHHHcC
Q 000167 864 ------------SPDWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMG 927 (1972)
Q Consensus 864 ------------d~~Wk~R~eale~l~~ll~~a~~~I-~~~~~~eL~~~L~~~L---~DsN~~V~~~Al~~l~~La~alg 927 (1972)
+..|..+......++.++.+..... .+.....++..|...+ +..+..++..++.+++.+..-+.
T Consensus 485 ~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~ 564 (1204)
T 3a6p_A 485 VGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVT 564 (1204)
T ss_dssp ------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGG
T ss_pred cccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHh
Confidence 2357777776666666665431112 1222112333333332 34566788888999988776543
Q ss_pred hhhHhhhhhHHHHHHHHhCC------------CcHHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCC-CChh
Q 000167 928 PAVEKSSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAK-LGAE 988 (1972)
Q Consensus 928 ~~~~~~~~~llp~ll~~L~D------------~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~----~l~~~L~~~~-~~~~ 988 (1972)
. -..|+..++..++..+.+ ..+.||.+|..++..++..++ +-..++ .+...+.... .+..
T Consensus 565 ~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~ 643 (1204)
T 3a6p_A 565 Y-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQM 643 (1204)
T ss_dssp T-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHH
T ss_pred c-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHH
Confidence 2 135677777888877766 456899999999999999985 333334 3334444333 3455
Q ss_pred HHHHHHHHHHHHhccCCC---CCC-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHH--H-
Q 000167 989 GRKDLFDWLSKQLTGLSG---FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL--A- 1061 (1972)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~---~~~-~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~--~- 1061 (1972)
.+..+...+.-.-...+. ... +..++.|++..+.+ ++++. +..-...|+..+|-+....+....++..+ .
T Consensus 644 e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~--~~~~~-~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~ 720 (1204)
T 3a6p_A 644 EKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS--QDMHR-VLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRAR 720 (1204)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC--HHHHH-HHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc--HHHHH-hhcCHHHHHHHhCCCCCcccccccchhhhhHHH
Confidence 566666665433111122 122 45677787777754 44555 33444678888887665555544554322 3
Q ss_pred ------HHHHHHhhcc
Q 000167 1062 ------LILERIKLNG 1071 (1972)
Q Consensus 1062 ------~I~~~l~k~~ 1071 (1972)
.+...+++.+
T Consensus 721 l~~~~~~l~~~l~r~~ 736 (1204)
T 3a6p_A 721 MSFCVYSILGVVKRTC 736 (1204)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5667777753
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.35 E-value=0.051 Score=65.87 Aligned_cols=281 Identities=10% Similarity=0.066 Sum_probs=128.4
Q ss_pred CCCchhhHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhcChh--HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhC
Q 000167 675 TKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750 (1972)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~--~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG 750 (1972)
..|+...+..+.+.++.-+... ..|....-.+..++.. ..+ .+.+.+.+-+ +++||-+|.-++..|+.+...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDM-TGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHH-HSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhc-CCCcHhHHHHHHHHHhcCCCH--
Confidence 4577666677777777666553 3566666666666554 222 3467777775 799999999999999888631
Q ss_pred CCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000167 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1972)
Q Consensus 751 ~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~ 830 (1972)
. =+..+...++.+ +.|.||.||.+|.-+...||....+-++.|++.
T Consensus 135 --~-m~~~l~~~lk~~-L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~------------------------------ 180 (355)
T 3tjz_B 135 --T-MLQAIERYMKQA-IVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE------------------------------ 180 (355)
T ss_dssp --T-THHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHH------------------------------
T ss_pred --H-HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHH------------------------------
Confidence 1 145788889997 999999999999998877775543333333221
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhc-cccchH
Q 000167 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNK 909 (1972)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~-L~DsN~ 909 (1972)
+.+.+.|.|--+-..|+..+..+... + ...+..++..|... +.+ .
T Consensus 181 ---------------------------l~~ll~d~n~~V~~~Al~lL~ei~~~-d----~~a~~kLv~~l~~~~l~~--~ 226 (355)
T 3tjz_B 181 ---------------------------AQEAASSDNIMVQYHALGLLYHVRKN-D----RLAVSKMISKFTRHGLKS--P 226 (355)
T ss_dssp ---------------------------HHHHTTCSSHHHHHHHHHHHHHHHTT-C----HHHHHHHHHHHHSSCCSC--H
T ss_pred ---------------------------HHHHhcCCCccHHHHHHHHHHHHHhh-c----hHHHHHHHHHHhcCCCcC--h
Confidence 22222333333333344444443321 0 00012222222221 111 1
Q ss_pred HHHHHHHHHHHHHHHHcChhh-HhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCC
Q 000167 910 NLVMATLITLGAVASAMGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLG 986 (1972)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~~-~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~~~~ 986 (1972)
-.. +.+|..+. .+++.= ......++..+...|..+...|.=.|..++-.+-.... +......+...|.++ +
T Consensus 227 ~~q---~~llr~l~-~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~--d 300 (355)
T 3tjz_B 227 FAY---CMMIRVAS-RQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSP--K 300 (355)
T ss_dssp HHH---HHHHHHHT-CC-----------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSS--S
T ss_pred HHH---HHHHHHHH-HhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCC--C
Confidence 111 12222221 222221 22345566677777888888888777777777654211 222344555667665 4
Q ss_pred hhHHHHHHHHHHHHhccCCCCCChhhhHHH-HHhhcCCCCHHHHHHHHHHH
Q 000167 987 AEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACI 1036 (1972)
Q Consensus 987 ~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l 1036 (1972)
+.+|.-++..|.......+. ....+.. +..|+.|.|..++-.|.-.|
T Consensus 301 ~niryvaLr~L~~l~~~~P~---~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 AALRYAAVRTLNKVAMKHPS---AVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSSHHHHHHCC----------------------------------------
T ss_pred chHHHHHHHHHHHHHHHCcH---HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 67899999988877665543 3333444 88899999988877765443
No 82
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.29 E-value=0.41 Score=61.89 Aligned_cols=372 Identities=10% Similarity=0.056 Sum_probs=192.3
Q ss_pred hHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhc
Q 000167 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV 713 (1972)
Q Consensus 638 ~~~~lv~~L~~~p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~ 713 (1972)
..+.++.+|. ..+..++..+...|..++.... -.+..+ .-.||.||..|.. ..++..|..+|..++...
T Consensus 49 ~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 49 ELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 3566777663 2345667777777777664211 111122 1357888887755 467888888998887531
Q ss_pred Chh--------HHHHHHHHhhhhCCChHHHHHHHHHHHHHHHHhCCC-CC---ChhhHHHHHH--hcCC-----------
Q 000167 714 GPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HL---KLKDLIDFCK--DTGL----------- 768 (1972)
Q Consensus 714 ~~~--------~vl~~l~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~-~l---~~k~li~~l~--~~gL----------- 768 (1972)
+.+ -.++.|+..+....++.++..+...|..+-..-... .+ -+..|+..+. ..|.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence 111 135666666644467777776665555543210000 00 1233444331 0011
Q ss_pred CCCchhHHHHHHHHHHHHHHhhChhHHhhh---hcccHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 000167 769 QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1972)
Q Consensus 769 ~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L---~~lkp~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~l 845 (1972)
...+..|+..|..+|..|-.. ++..+..+ +++.+.++..|.....+..... +.+...
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~-----~~~ena-------------- 261 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDS-----KLVENC-------------- 261 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC-----HHHHHH--------------
T ss_pred ccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH-----HHHHHH--------------
Confidence 233578999999988888532 22222222 4566777777766543321100 000000
Q ss_pred CcccccccccHHHHHhcC-CCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHH
Q 000167 846 PREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVA 923 (1972)
Q Consensus 846 prvdIs~~l~~~ll~~l~-d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D-sN~~V~~~Al~~l~~La 923 (1972)
+-+...|.-..-.... ...|...... +....... ..+.+..-.-..++..|...|.+ .+..+...|+.+|..|+
T Consensus 262 --v~aL~NLs~~~~~e~~~~~~~~~~~~~-~~~~~~~~-~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ 337 (584)
T 3l6x_A 262 --VCLLRNLSYQVHREIPQAERYQEAAPN-VANNTGTS-PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337 (584)
T ss_dssp --HHHHHHHHTTHHHHSTTCCC---------------C-CCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHhhccccccccchhhhhhhccc-cccccccc-CchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 0000000000000000 0000000000 00000000 01111100002455666777754 47788899999999997
Q ss_pred HHcCh---hhHhhh--hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-----hhHHHHHHHHhcCC------CCh
Q 000167 924 SAMGP---AVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-----KMVPYVTTALTDAK------LGA 987 (1972)
Q Consensus 924 ~alg~---~~~~~~--~~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~-----~ll~~l~~~L~~~~------~~~ 987 (1972)
..-+. .+...+ ...+|.|+..|......|+.+|..+|..+....... ..+|.|...|.+.. .+.
T Consensus 338 ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~ 417 (584)
T 3l6x_A 338 AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE 417 (584)
T ss_dssp SSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCH
T ss_pred cCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchH
Confidence 54322 222233 356999999999999999999999999998766533 35566777776542 123
Q ss_pred hHHHHHHHHHHHHhccCCCCC-Ch--hhhHHHHHhhcCCC--CHHHHHHHHHHHHHHH
Q 000167 988 EGRKDLFDWLSKQLTGLSGFP-DA--AHLLKPASIAMTDK--SSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~~~-~~--~~ll~pl~~~L~D~--~~dVR~aA~~~l~~l~ 1040 (1972)
++...++..|...+...+... .+ ...+.+|+..+.+. ...++++|..+|..+.
T Consensus 418 ~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 418 DTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 556667777765554322111 11 23456688888765 7888888887776554
No 83
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.23 E-value=0.34 Score=61.25 Aligned_cols=387 Identities=11% Similarity=-0.001 Sum_probs=204.1
Q ss_pred hHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh--hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-h-hhh-----
Q 000167 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-E-AVD----- 127 (1972)
Q Consensus 57 ~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~--~~~v~~~LveK~l~~k~~~k~~a~~~ll~~~E~-~-~~~----- 127 (1972)
+-+++...|..+|..|+.+|..+...... .... -...+|.||+-+-+..+.++..|..++..+.-. + .-.
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~ 85 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 44567777889999999999887643221 1111 234688888763336788999998888877743 1 112
Q ss_pred hHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhh--------cC--------CChhHHHHHHH
Q 000167 128 VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF--------DH--------QDQNVRASSKG 190 (1972)
Q Consensus 128 ~v~~~L~~~~~-~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll--------~~--------~d~~VR~~a~~ 190 (1972)
..++.|...+. +.+++++..++.+|.++-..-..+..=++..++.|..++ .+ .+..|...|..
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~ 165 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHH
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHH
Confidence 33567777787 789999999999998876531111100125778888888 22 34556667777
Q ss_pred HHHHHHHhhCCchhhHHHhh--hChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhh-hh--ccccCCCCCCCCCCCCC
Q 000167 191 LTLELCRWIGKDPVKTILFE--KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELG-QE--LISEDVGPGPSEESTAD 265 (1972)
Q Consensus 191 l~~ely~~lG~~~l~~~l~~--~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~-~~--a~~~~~~~~~~~~~~~~ 265 (1972)
++..|... ++ .+..+.+ +.-|..+..|......... ..+. ......... -. ...+.. .+
T Consensus 166 aL~nLs~~--~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~---~~~~-~e~a~~~L~nLs~~~~~~~~-~~-------- 229 (457)
T 1xm9_A 166 CLRNLSSA--DA-GRQTMRNYSGLIDSLMAYVQNCVAASRC---DDKS-VENCMCVLHNLSYRLDAEVP-TR-------- 229 (457)
T ss_dssp HHHHHTTS--HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCT---TCTT-HHHHHHHHHHHTTTHHHHSC-CH--------
T ss_pred HHHHHccC--HH-HHHHHHHcCCCHHHHHHHHHhhccccCC---chHH-HHHHHHHHHhcccchhccCc-ch--------
Confidence 77766653 22 2233321 3333344444332211100 0000 000000000 00 000000 00
Q ss_pred CCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHHHHHHHHHHh---cCCCC-CCCChHHHHHHHHHHhc-ccCHH
Q 000167 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA---STKRI-APGDFTEVCRTLKKLIT-DVNIA 340 (1972)
Q Consensus 266 ~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~---~~~ki-~~~~y~~l~~~L~k~l~-D~N~~ 340 (1972)
.....+ .......... .. ..| .....+. +..+.+ + .+. ..++- ..--..++++.|...+. ..+..
T Consensus 230 -~~~~~~-~~~~~~~~~~-~~-~~~-~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 230 -YRQLEY-NARNAYTEKS-ST-GCF-SNKSDKM---MNNNYD-C-PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp -HHHHHH-TC------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred -hhhccc-cccccccccc-cc-chh-hccchhh---hhcccc-C-CccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 000000 0000000000 00 111 1111100 000000 0 000 00100 00002356677777777 55678
Q ss_pred HHHHHHHHHHHHHHHhhh---ch-hhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHH
Q 000167 341 VAVEAIQAIGNLARGLRT---HF-SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVK 409 (1972)
Q Consensus 341 V~~~A~~~l~~La~~L~~---~f-~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l~ 409 (1972)
+...|+-+|..|+.+-.. .. ...+ ...+|.|++.+......|+..+..+|..+... ... ..+++.++
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHH
Confidence 888889999999865332 11 1112 35789999999999999999999999988754 122 23567777
Q ss_pred HHhhcCCh------HHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Q 000167 410 TSVKNKVP------LVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG-TPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 410 ~~l~~Knp------~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds-~~~VR~aA~~~l~~l~ 473 (1972)
.-|.+.++ .+...++..|..++...+.. ..... ...++.|..++... +.+|+..|...|..++
T Consensus 378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77776543 56678888888877654432 11111 24678888888888 8999998888776443
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.01 E-value=0.066 Score=64.94 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=129.2
Q ss_pred CCCCCCCcccccccCcccchhhhhcc--CChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHH
Q 000167 271 DEYELVDPVDILTPLEKSGFWEGVKA--TKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (1972)
Q Consensus 271 D~~dl~~~vdIl~kl~~~~f~~~l~s--~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~ 347 (1972)
.||.-.|...|+... ..| .+ .+-+.+++++..+..+. .+..+....-..++..+.|++...|..+....--
T Consensus 17 ~p~~~~~k~~v~qe~--r~f----n~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYL 90 (355)
T 3tjz_B 17 NPFQHLEKSAVLQEA--RVF----NETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYL 90 (355)
T ss_dssp ---CCCCHHHHHHHG--GGT----TSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHH
T ss_pred CccccchHHHHHHHH--HHh----cCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456555555555432 123 33 24445566888877655 4533332334567778888998888877777766
Q ss_pred HHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHH
Q 000167 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1972)
Q Consensus 348 ~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L 427 (1972)
.+..+++. ...+-.+...+.+=+.++++.+|-.|..+|..+... .-++.+.+.+..++.|++|-||..++-..
T Consensus 91 yl~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~~ 163 (355)
T 3tjz_B 91 TIKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVSS 163 (355)
T ss_dssp HHHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 66666554 344568899999999999999998776666666432 44678888899999999999999998888
Q ss_pred HHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 428 ~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.+++...+ . .++.++..+..++.|+++.|-..|..++..+.+
T Consensus 164 ~kL~~~~p-e----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 164 LHLLKCSF-D----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHTTTCH-H----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhccCH-H----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 87765432 2 236788899999999999998777776666653
No 85
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=95.90 E-value=1 Score=59.47 Aligned_cols=376 Identities=10% Similarity=0.084 Sum_probs=204.5
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh---h
Q 000167 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY---A 91 (1972)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~~~~~---~ 91 (1972)
||.+.+... =..|.-|.--|.++...... ......+....+.+++.+.....+.-++|.|..+ ..-.. .... -
T Consensus 299 ~~L~~~l~~-~~ir~lAavvL~KL~~~~~~-~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~~~-VKe~L~~d 374 (778)
T 3opb_A 299 QLLERSLNV-EDVQIYSALVLVKTWSFTKL-TCINLKQLSEIFINAISRRIVPKVEMSVEALAYL-SLKAS-VKIMIRSN 374 (778)
T ss_dssp HHHHHHTTS-GGGHHHHHHHHHHHTGGGTC-TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH-TTSSH-HHHHHHHC
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCHH-HHHHHHhC
Confidence 333444332 36788888888887654322 2223455677788888887767799999987544 33221 1111 1
Q ss_pred HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh-h------hhHHHHHHHHhhcCChhhHHHHHHHHH-HHHHHhCCC
Q 000167 92 KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA-V------DVFLDVMEKAIKNKVAKAVVPAIDVMF-QALSEFGAK 162 (1972)
Q Consensus 92 ~~v~~~LveK~l~-~k~~~k~~a~~~ll~~~E~~~-~------~~v~~~L~~~~~~KnpKv~~~~l~~l~-~~l~~fG~~ 162 (1972)
...+..|++-+-. .+. .....++..+.-+.. . +.=+..|.+..+++.|+.-...-.... +-+.+|-.+
T Consensus 375 ~~~L~~Lv~llk~~~d~---s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~ 451 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMT---HCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEK 451 (778)
T ss_dssp HHHHHHHHHHHTTTCCT---THHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHH
Confidence 3345666655321 122 233444444443311 1 112333433333334432110000000 011222221
Q ss_pred ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhh
Q 000167 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (1972)
Q Consensus 163 ~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (1972)
.+-=..+++.|..++.+.++++|+.|..++..|-.. ...+..+.+ +-.+...+
T Consensus 452 ~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d---~~~R~~lvq------qGal~~LL------------------ 504 (778)
T 3opb_A 452 YILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS---KNFIPQLAQ------QGAVKIIL------------------ 504 (778)
T ss_dssp HTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS---GGGHHHHHH------TTHHHHHH------------------
T ss_pred HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHH------CCCHHHHH------------------
Confidence 111123677888899999999999988877766422 112222210 00000000
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccC-Ch--HHHHHHHHHHHHHh--cCCC
Q 000167 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKAT-KW--SERKDAVAELTKLA--STKR 317 (1972)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~-kW--keR~eaL~~L~~l~--~~~k 317 (1972)
..+.+. .. .-|..|+..|..++ .+|.
T Consensus 505 -------------------------------------------------~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 505 -------------------------------------------------EYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp -------------------------------------------------HHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred -------------------------------------------------HHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 000000 00 23677888887765 2333
Q ss_pred CCC-C-ChHHHHHHHHHHhc-ccCH-------------HHHHHHHHHHHHHHHHhh---hch-hhhhh--hHHHHHHHHh
Q 000167 318 IAP-G-DFTEVCRTLKKLIT-DVNI-------------AVAVEAIQAIGNLARGLR---THF-SGSSR--FLLPVLLEKL 375 (1972)
Q Consensus 318 i~~-~-~y~~l~~~L~k~l~-D~N~-------------~V~~~A~~~l~~La~~L~---~~f-~~~~~--~llp~LL~kl 375 (1972)
+.- + ...+.++.|...+. +... .-...|+.+|..||..=. .+. ...+. ..+|.|.+.+
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL 615 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM 615 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG
T ss_pred HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH
Confidence 211 1 11257777777776 3332 226789999999997531 111 12333 4789999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCh-HhH-----------HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 376 KEKKPTVAESLTQTLQAMHKAGCLNL-VDV-----------VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 376 kdkk~~V~~aa~~aL~al~~~~~~~l-~~i-----------l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
.+.+..|+.++.+++..++.+ .... ..+ ++.+..-+...+..+|.+++.+|+.+-...+. .....+
T Consensus 616 ~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~-ia~~ll 693 (778)
T 3opb_A 616 LDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL-IAKELL 693 (778)
T ss_dssp GCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHT
T ss_pred hCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH-HHHHHH
Confidence 999999999999999999865 1111 122 55677778899999999999888876443332 112222
Q ss_pred --hhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHH
Q 000167 444 --KDYVPICMECLND--GTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 444 --~~l~p~l~k~l~D--s~~~VR~aA~~~l~~l~~~ 475 (1972)
...+..++..+.| .++++|..+..++..+...
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 3577888899999 8999999999999998864
No 86
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.72 E-value=12 Score=52.07 Aligned_cols=177 Identities=7% Similarity=0.009 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHH
Q 000167 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (1972)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~-----DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp 939 (1972)
.+|+.|..++-.++.|..+.........+.++++.|...+. |.+..|+..++-++|..+.-+..+ ..|++.++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 58999999999999987421111001113456666665554 455556667889999888766433 457889999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHh
Q 000167 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI 1019 (1972)
Q Consensus 940 ~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~ 1019 (1972)
.++..+.|+++.|..+|..|+..+++.|+-. +.....++ ..+.+..++.-+..
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~---------l~~~~~~e------------------~~p~~~~il~~l~~ 596 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYH---------FVIQQPRE------------------SEPFIQTIIRDIQK 596 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHH---------HHSCCTTC------------------SSCHHHHHHHTHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH---------hhccCCCC------------------CchhHHHHHHHHHH
Confidence 9999999999999999999999999887611 11000000 01112222222344
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHcChhH-HHHHhccCChHHHHHHHHHHhh
Q 000167 1020 AMTDKSSDVRKAAEACIVEILRAGGQET-IEKNLKDIQGPALALILERIKL 1069 (1972)
Q Consensus 1020 ~L~D~~~dVR~aA~~~l~~l~~~~G~~~-~~~~l~~L~~~~~~~I~~~l~k 1069 (1972)
++.+-...-+..+.+++..++...+.+. ...++..|=+.-...++..+++
T Consensus 597 ~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~ 647 (1023)
T 4hat_C 597 TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQ 647 (1023)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455566777888899999998888654 5556666655555555555543
No 87
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.70 E-value=13 Score=52.61 Aligned_cols=187 Identities=13% Similarity=0.029 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhc-c------cCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 298 KWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT-D------VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 298 kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~-D------~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
+=..|.-|+..|+..+.. ..+...+...|-..|...+. . ....|+...+.++..|++.- |-..+..++
T Consensus 60 ~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d---~p~~Wp~ll 136 (1204)
T 3a6p_A 60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE---WPQHWPDML 136 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH---STTTCTTHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh---CcccchHHH
Confidence 334566666666665421 22333333334444444433 1 45778888889998888763 334567888
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh-cC-----------------CChHhHHHHHHHHhhc----------------
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKA-GC-----------------LNLVDVVEDVKTSVKN---------------- 414 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~-~~-----------------~~l~~il~~l~~~l~~---------------- 414 (1972)
+.|+..+.. ....++.+..+|..+..- .. ..+..|++.+...+++
T Consensus 137 ~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~ 215 (1204)
T 3a6p_A 137 IELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQES 215 (1204)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 888887755 455677777777777542 00 0122344444444432
Q ss_pred ---CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc-hhHHHhHhhccH
Q 000167 415 ---KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM-RPLERSIEKLDD 490 (1972)
Q Consensus 415 ---Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge-~~~~~~l~~Ld~ 490 (1972)
.++.++..++..+..++.-.+...+...-..+++.+..++.| +++|.+|.+||..++..-.. ....+++.-+.+
T Consensus 216 ~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~ 293 (1204)
T 3a6p_A 216 KAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGD 293 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSH
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhh
Confidence 123455566665555444223222211112478888888874 78999999999999875432 223345555543
No 88
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.66 E-value=0.37 Score=60.95 Aligned_cols=267 Identities=13% Similarity=0.105 Sum_probs=159.3
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc----cChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCCchhh
Q 000167 130 LDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI----IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVK 205 (1972)
Q Consensus 130 ~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~----~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~ 205 (1972)
++.|...+.+.++.++..++.+|..+. ++... +--...+|.|..++.+.++.|+..|...+..|... .++ .+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~--~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~-~k 79 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STT-NK 79 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHT--SSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHH-HH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHH--cCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHH-HH
Confidence 456667777888899998888888764 23211 10123688999999999999999988777666542 111 11
Q ss_pred HHHhhhChHHHHHHHHHHHHhccCCCCCCcchhhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 000167 206 TILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPL 285 (1972)
Q Consensus 206 ~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl 285 (1972)
..+. + .++ +
T Consensus 80 ~~i~------------------------------------------~---~G~-----------i--------------- 88 (457)
T 1xm9_A 80 LETR------------------------------------------R---QNG-----------I--------------- 88 (457)
T ss_dssp HHHH------------------------------------------H---TTC-----------H---------------
T ss_pred HHHH------------------------------------------H---cCC-----------H---------------
Confidence 1110 0 000 0
Q ss_pred cccchhhhhc-cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh--------cc--------cCHHHHHHHHHH
Q 000167 286 EKSGFWEGVK-ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI--------TD--------VNIAVAVEAIQA 348 (1972)
Q Consensus 286 ~~~~f~~~l~-s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l--------~D--------~N~~V~~~A~~~ 348 (1972)
+-|.+.+. +.+-..+..|...|..|+..+.....-....++.|.+.+ .+ ....+...|+.+
T Consensus 89 --~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~a 166 (457)
T 1xm9_A 89 --REAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGC 166 (457)
T ss_dssp --HHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHH
T ss_pred --HHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHH
Confidence 12444444 445566777777777776543211100114555566666 21 345677799999
Q ss_pred HHHHHHHhhhchhhhhh--hHHHHHHHHhcc------CcHHHHHHHHHHHHHHHHh------------------------
Q 000167 349 IGNLARGLRTHFSGSSR--FLLPVLLEKLKE------KKPTVAESLTQTLQAMHKA------------------------ 396 (1972)
Q Consensus 349 l~~La~~L~~~f~~~~~--~llp~LL~klkd------kk~~V~~aa~~aL~al~~~------------------------ 396 (1972)
|..|+.. ......... .++|.|+..+.. ....+++.+..+|..+...
T Consensus 167 L~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (457)
T 1xm9_A 167 LRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245 (457)
T ss_dssp HHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------
T ss_pred HHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccccccc
Confidence 9999875 332333332 578888877764 2223455554445443200
Q ss_pred --cCC------------------------Ch-----HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChh--HH-HH
Q 000167 397 --GCL------------------------NL-----VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKA--AV-LK 441 (1972)
Q Consensus 397 --~~~------------------------~l-----~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~--~l-~~ 441 (1972)
+|. .. ..+++.+...|. ++++.+++.++..|..+.....+. .. ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~ 325 (457)
T 1xm9_A 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQL 325 (457)
T ss_dssp --------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHH
T ss_pred ccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHH
Confidence 000 00 234566666666 567999999998888866543221 12 11
Q ss_pred hh--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000167 442 VH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1972)
Q Consensus 442 ~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 474 (1972)
.+ ...+|.|+++|.+.+.+||..|..++..+..
T Consensus 326 ~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp HHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 22 3578999999999999999999999988865
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.49 E-value=3.1 Score=55.35 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=62.2
Q ss_pred hhhhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchhHH---hhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhc
Q 000167 8 LKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR---ELGPLFKKTVADSNAPVQDKALDALIAYLKAAD 84 (1972)
Q Consensus 8 ~~~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~d~~~~~~~---~~~~~~~k~v~DsN~~vqe~~leal~~~v~~~~ 84 (1972)
+.+=.=+|+.++|+|.+.+.|..|...|...+... .....+. -+..++.+.+.|+|..|++.|..||..+....+
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 44456689999999999999999999999887421 1111111 123456778999999999999999988876654
Q ss_pred hhhhhh--hHHHHHHHH
Q 000167 85 ADAGRY--AKEVCDAIA 99 (1972)
Q Consensus 85 ~~~~~~--~~~v~~~Lv 99 (1972)
.++..+ ..+|++.|.
T Consensus 109 ~d~~~~l~~~~il~~L~ 125 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIE 125 (684)
T ss_dssp HHHHHHHHHTTHHHHHH
T ss_pred chHHHHHHHcChHHHHH
Confidence 443332 234555543
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.36 E-value=0.11 Score=64.36 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=96.2
Q ss_pred ccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh
Q 000167 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1972)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~ 933 (1972)
+...|...+-|.+|.+|-.|.-.|++++...... . + +....|. -.|+++|..++
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G--A---G--------R~~~~N~---DLAvRLLCVLA---------- 228 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG--G---D--------IQIRVDS---KLFSKIYEILV---------- 228 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------------CCCCCCT---THHHHHHHHHH----------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC--C---c--------eeccccH---HHHHHHHHHHH----------
Confidence 6778889999999999999999999999853210 0 1 1122233 34444444443
Q ss_pred hhhHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHhcCch-hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000167 934 SKGVLSDILKCLGD-----NKKHMRECTLTVLDAWLAAVHLD-KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1972)
Q Consensus 934 ~~~llp~ll~~L~D-----~k~~Vr~Aa~~aL~~i~~~~~l~-~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~ 1007 (1972)
+.+++| .-.+||+.|.++|.++ .+++-+ .++..+...+..+ .|++|.+.+--|... ...-
T Consensus 229 --------LDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~~IL~qLV~~l~~~--~WEVRHGGLLGLKYL-~DLL-- 294 (800)
T 3oc3_A 229 --------TDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPNDIIEQLVGFLDSG--DWQVQFSGLIALGYL-KEFV-- 294 (800)
T ss_dssp --------HBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSCCHHHHHTTGGGCS--CHHHHHHHHHHHHHT-GGGC--
T ss_pred --------hccccccccCeeeeehHHHHHHHHHHH-HhCChhHHHHHHHHhhcCCC--CeeehhhhHHHHHHH-HHHH--
Confidence 334444 3468999999999999 776533 1222222333433 699999887777644 2211
Q ss_pred CChhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000167 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
..+...+..++.+|.|.+.|||..|+++|.-+.
T Consensus 295 ~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 295 EDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp CCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 124444555888999999999999999886655
No 91
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.28 E-value=1.3 Score=59.58 Aligned_cols=256 Identities=17% Similarity=0.117 Sum_probs=157.3
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChh--HHhhh----hcccHH
Q 000167 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD--IKGFL----ADVKPA 804 (1972)
Q Consensus 731 npKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~--l~~~L----~~lkp~ 804 (1972)
++.++.+++..|.-+.- |... ..+++.+... +.+.++.+|..|.-.+|-+|.-.|+. +...+ ++....
T Consensus 450 ~~~ir~gAaLGLGla~~--GS~~---eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~ 523 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAM--GSAN---IEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN 523 (963)
T ss_dssp HHHHHHHHHHHHHHHST--TCCC---HHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH
T ss_pred cHHHHHHHHHHHHHHhc--CCCC---HHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH
Confidence 37788787776655432 3321 3566777776 77777888999999999988655532 11111 111111
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhc-CCCCHHHHHHHHHHHHHHHHH
Q 000167 805 LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL-ESPDWKVRLESIEAVNKILEE 883 (1972)
Q Consensus 805 ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l-~d~~Wk~R~eale~l~~ll~~ 883 (1972)
+...+---+..+- +.+.+ ..+.+++.+ .+.+|-.|..++-.+.-.
T Consensus 524 vrR~aalgLGll~---------------------------~g~~e----~~~~li~~L~~~~dp~vRygaa~alglA--- 569 (963)
T 4ady_A 524 ITRGLAVGLALIN---------------------------YGRQE----LADDLITKMLASDESLLRYGGAFTIALA--- 569 (963)
T ss_dssp HHHHHHHHHHHHT---------------------------TTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhh---------------------------CCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHH---
Confidence 1111100000000 00011 123444444 467899999887766522
Q ss_pred ccccCCCCChhhHHHHHHh-ccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHh-CCCcHHHHHHHHHHHH
Q 000167 884 ANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLD 961 (1972)
Q Consensus 884 a~~~I~~~~~~eL~~~L~~-~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L-~D~k~~Vr~Aa~~aL~ 961 (1972)
.....+ ...++.|.. ..+|.+..|++.|+..|+.|+ +|.. ..++.++..| .+.++.||..|.-||.
T Consensus 570 ---yaGTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~------e~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 570 ---YAGTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDY------TTVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp ---TTTSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred ---hcCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222222 445553433 447888889998888887763 4432 2255555544 4678999999999999
Q ss_pred HHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--CCChhhhHHHHHhhcCC--CCHHHHHHHHHHHH
Q 000167 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD--KSSDVRKAAEACIV 1037 (1972)
Q Consensus 962 ~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D--~~~dVR~aA~~~l~ 1037 (1972)
.+....+...+++.|...+.+. +..+|+.++.-|......... .+.+..++.-+.+.+.| .++.+|-.++-+.+
T Consensus 638 li~aGn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 638 IACAGKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp HHTSSSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 8876677778888777777765 689999999999877655443 24566667767777776 45778988888877
Q ss_pred HHH
Q 000167 1038 EIL 1040 (1972)
Q Consensus 1038 ~l~ 1040 (1972)
.+.
T Consensus 716 ll~ 718 (963)
T 4ady_A 716 IMN 718 (963)
T ss_dssp HHT
T ss_pred HHh
Confidence 665
No 92
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.95 E-value=0.021 Score=59.02 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=62.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
+.|++.+.|.+|.+|..|+..+..+- . .+.+..|...+.|.+..|+..|+..++.+. -.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~--------~---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~ 103 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ--------D---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GE 103 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC--------S---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC--------C---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cH
Confidence 56777788888888888888776431 1 445677777778888888888888877663 13
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000167 936 GVLSDILKCLGDNKKHMRECTLTVLD 961 (1972)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~Aa~~aL~ 961 (1972)
..++.++..+.|..+.||.+|..+|.
T Consensus 104 ~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45777888888888888888877764
No 93
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=94.80 E-value=1.6 Score=60.21 Aligned_cols=397 Identities=9% Similarity=0.028 Sum_probs=207.9
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchh-hh--hhhHHHHHHHHHhhcC-C-ChhHHHHHHHHHHHHHhhhhh--
Q 000167 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADAD-AG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELEAV-- 126 (1972)
Q Consensus 54 ~~~~~k~v~DsN~~vqe~~leal~~~v~~~~~~-~~--~~~~~v~~~LveK~l~-~-k~~~k~~a~~~ll~~~E~~~~-- 126 (1972)
.+.+..++.|+.-.-|..|.|.+..++...... +. ...-+++..++.++|. + .+.+...=..|+-...+.-+|
T Consensus 510 ~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR 589 (997)
T 1vsy_5 510 FELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRR 589 (997)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhh
Confidence 455667889999999999999998887665331 21 2245577778888886 3 555554323333333332233
Q ss_pred -hhHHHHHHH--H---hhcCChhhHHHHHHHHHHHHHHhCCCccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhC
Q 000167 127 -DVFLDVMEK--A---IKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (1972)
Q Consensus 127 -~~v~~~L~~--~---~~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (1972)
..+++.|.. . ....+.=..+.-+..|..++.+.|-+.-..++++..+. ++|+-++||++.-.++..++...-
T Consensus 590 ~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 590 SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 455665522 1 11223334556788888999999987555788887777 999999999999999998887762
Q ss_pred Cch---hhHHHh-------------hhChHHHHHHHHHHHHhcc---CC---CCCCcchhhhhhHhhhhhc----cccCC
Q 000167 201 KDP---VKTILF-------------EKMRDTMKKELEVELVNVS---GT---ARPTRKIRAEQDKELGQEL----ISEDV 254 (1972)
Q Consensus 201 ~~~---l~~~l~-------------~~Lk~~q~keLe~~f~k~~---~~---~~P~R~~rs~~~~~~~~~a----~~~~~ 254 (1972)
-.. +...+- ...++....-+.+.|++++ +. ..|.-..++....-. .+. .+. .
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~-kTvl~wl~~~-l 745 (997)
T 1vsy_5 668 NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRT-STIFYWIKEM-A 745 (997)
T ss_dssp CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHH-HHHHHHHHHH-S
T ss_pred ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHH-HHHHHHHHHH-h
Confidence 100 110000 0000111111222222221 00 000000000000000 000 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccccCcccchhhhhccCChHHHHH--HHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 000167 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKD--AVAELTKLASTKRIAPGDFTEVCRTLKK 332 (1972)
Q Consensus 255 ~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~e--aL~~L~~l~~~~ki~~~~y~~l~~~L~k 332 (1972)
+.+. ...+-| +++.. ++ | .+....+.++=.+-.. +.-.+..+...+ +.+.....++.+|..
T Consensus 746 ~~~~--------~~~l~~--~~~~~-ll---P--~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~-~~~~~~~~~l~~l~~ 808 (997)
T 1vsy_5 746 RGPN--------KVLLVP--YLVDY-VL---P--FLIGLVKHKDVCALASLDPVRLYAGLGYMP-IRKNHVAAIVDYVCS 808 (997)
T ss_dssp SGGG--------HHHHHH--HHTTT-TT---T--TTCTTSSCSHHHHHTTCCSHHHHHHTSSSC-CCHHHHHHHHHHSSC
T ss_pred cCCC--------ccchhh--hhHHH-HH---H--HHHHHhhcCcHHHHHhhHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 0000 000000 00000 11 1 1211112221111000 111122222222 222333456666666
Q ss_pred Hhc-ccCHHHHHHHHHHHHHHHHHhhhch--h-hhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCC-ChHhHHH
Q 000167 333 LIT-DVNIAVAVEAIQAIGNLARGLRTHF--S-GSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCL-NLVDVVE 406 (1972)
Q Consensus 333 ~l~-D~N~~V~~~A~~~l~~La~~L~~~f--~-~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~~~~-~l~~il~ 406 (1972)
... +.+= .+..++..++.+.- +.-| . .....++..++..+.|+. ..||+.|..+|..++. |. ....+-
T Consensus 809 ~~~~s~sW-~R~~~L~~lq~~~f--~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~--c~~~~~~~~- 882 (997)
T 1vsy_5 809 SNVALSSN-QTKLQLAFIQHFLS--AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH--NWKEEQPLL- 882 (997)
T ss_dssp TTTTSCSS-SHHHHHHHHHHHHH--HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH--SCCSHHHHH-
T ss_pred HHhcCCcH-HHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--cCCchhhHH-
Confidence 555 4454 55555666555542 2222 1 223567888888899999 9999999999999986 55 433333
Q ss_pred HHHHHhhcCC----------------hHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCChHHHHHHHHHH
Q 000167 407 DVKTSVKNKV----------------PLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1972)
Q Consensus 407 ~l~~~l~~Kn----------------p~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 469 (1972)
++...+..+- -..|-++..-|..++...|-.. ..+.++.++..|....+|+.+ |+..+.+++
T Consensus 883 ~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tl 961 (997)
T 1vsy_5 883 SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTI 961 (997)
T ss_dssp HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHH
T ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHH
Confidence 3333333221 1355666777777777665332 235568888888888899766 999999999
Q ss_pred HHHHHHhCc
Q 000167 470 AAIAKSVGM 478 (1972)
Q Consensus 470 ~~l~~~~ge 478 (1972)
+.|.+.--+
T Consensus 962 seFkrTH~D 970 (997)
T 1vsy_5 962 SEFKKVRAD 970 (997)
T ss_dssp HHHHHHTST
T ss_pred HHHHhccch
Confidence 999987654
No 94
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.68 E-value=0.26 Score=60.12 Aligned_cols=189 Identities=9% Similarity=0.002 Sum_probs=128.6
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CC--hHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhchhhh-
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~--y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (1972)
.+...+.+.+-..+..|.-.|..|+.+..-.. .. -...++.|.+.+ ...+..+...|+.++..|+..-...-...
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 210 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHH
Confidence 46666777777888999999988875311000 00 012456666654 45567788899999999987332211222
Q ss_pred -hhhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000167 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (1972)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~al~~~--~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~ 430 (1972)
....+|.|++.+...+. .+++.+..+|..+..+ ++... ...++.+...|.+.+..++.+++..|..+
T Consensus 211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999987654 4788888888887752 01010 12578888899999999999999999886
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCc
Q 000167 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1972)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge 478 (1972)
... ......... .-.+|.|+.+|.+.++.+|+.|..+|..+...-++
T Consensus 291 a~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 291 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred hCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 532 222222222 34789999999999999999999999988865443
No 95
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.79 E-value=3.4 Score=55.80 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=95.2
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 000167 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (1972)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 371 (1972)
..++|. +..|+-.|.-|-. ++..+.+..|.+.+. ..+..+...|+-.||.+..|.+.. .+..|
T Consensus 369 k~~~~~-k~sA~aSLGlIh~------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-------~~~lL 434 (963)
T 4ady_A 369 KAQNWA-KFTATASLGVIHK------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-------TTDYL 434 (963)
T ss_dssp HCCTHH-HHHHHHHHHHHTS------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-------HHHHH
T ss_pred ccchHH-HHHHHHHhhhhcc------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-------HHHHH
Confidence 356775 3455555544432 223345667777775 456788999999999998877642 33444
Q ss_pred HHHhccCc--------HHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000167 372 LEKLKEKK--------PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1972)
Q Consensus 372 L~klkdkk--------~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1972)
.+.+.+.+ ..++.++.-+|--++.. +.=+++++.|...+.+.++.++..+..-|..++-.+..... +
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G--S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---i 509 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG--SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---I 509 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---H
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---H
Confidence 44444333 56676665565554432 33467888888888877777777666666665544332211 2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 444 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
..++.. +++|.+..||..+..+|+.++
T Consensus 510 ~~LL~~---~~e~~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 510 HDMFTY---SQETQHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHH---HHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHH---HhccCcHHHHHHHHHHHHhhh
Confidence 333333 335667788888888887663
No 96
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=93.63 E-value=0.61 Score=58.72 Aligned_cols=187 Identities=9% Similarity=0.006 Sum_probs=127.1
Q ss_pred chhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CC--hHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhchhhh-
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~--y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 363 (1972)
.+...+.+.+=..+..|.-.|..|+.+..-.. .. -...++.|.+.+ ...+..+...|+.++..|+..-...-...
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45666777777788888888888864310000 00 012455666654 45577889999999999998432211222
Q ss_pred -hhhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCC-h-----HhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000167 364 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (1972)
Q Consensus 364 -~~~llp~LL~klkdkk~----~V~~aa~~aL~al~~~--~~~~-l-----~~il~~l~~~l~~Knp~vR~~~l~~L~~~ 430 (1972)
....+|.|+..+...+. .+++.+..+|..+..+ ++.. - ...++.+...|.+.+..++.+++..|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999877654 3788888888887752 1111 0 12567888889999999999999999887
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 000167 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1972)
... .+....... .-.+|.|+.+|...++.+|+.|..+|..+...-
T Consensus 407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 533 222222222 347899999999999999999999999887643
No 97
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.50 E-value=6.5 Score=54.54 Aligned_cols=150 Identities=13% Similarity=0.205 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCC-----------------CcH------HHHHHHHHHHHHHHHhcC
Q 000167 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-----------------NKK------HMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 912 ~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D-----------------~k~------~Vr~Aa~~aL~~i~~~~~ 968 (1972)
...-+++...+|.++|..|.+++..+.+.+++.++- +.+ .||.+....+.+++.+..
T Consensus 690 l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~ 769 (1073)
T 3gjx_A 690 LGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSN 769 (1073)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344567778899999999999999999988866531 112 245555566666666543
Q ss_pred -----chhhHHHHHHHH-h--cCCCChhHH-HHHHHHHHHHhccCCC--CCChhhhHHHHHhh----cC---CCCHHHHH
Q 000167 969 -----LDKMVPYVTTAL-T--DAKLGAEGR-KDLFDWLSKQLTGLSG--FPDAAHLLKPASIA----MT---DKSSDVRK 1030 (1972)
Q Consensus 969 -----l~~ll~~l~~~L-~--~~~~~~~~R-~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~----L~---D~~~dVR~ 1030 (1972)
...++|.+.+.+ . ..+ .|..| .++|..++..+.+.+. .+.+..++..++.| ++ +..+|.|.
T Consensus 770 ~~~~v~~~~i~pl~~~vl~dY~~~-~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~ 848 (1073)
T 3gjx_A 770 DPQMVAENFVPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRT 848 (1073)
T ss_dssp CHHHHHHHTSHHHHHHTHHHHHHS-CGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHhcC-CcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHH
Confidence 234555555443 1 112 46666 6777777776666554 23444444444443 43 67899999
Q ss_pred HHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHH
Q 000167 1031 AAEACIVEILRAGGQETIEKNLKDIQGPALALILERI 1067 (1972)
Q Consensus 1031 aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l 1067 (1972)
.-.+.+.++..+.-. .+-.|++...+.+.+.+
T Consensus 849 ~ff~ll~~~~~~~f~-----~l~~l~~~~~~~~i~~i 880 (1073)
T 3gjx_A 849 NFFLLLQAVNSHCFP-----AFLAIPPAQFKLVLDSI 880 (1073)
T ss_dssp HHHHHHHHHHHHCGG-----GTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH-----HHHcCCHHHHHHHHHHH
Confidence 999999998877332 34457777666666554
No 98
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.36 E-value=0.6 Score=56.84 Aligned_cols=172 Identities=11% Similarity=0.060 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHHHHHHHh
Q 000167 301 ERKDAVAELTKLASTKR-IAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (1972)
Q Consensus 301 eR~eaL~~L~~l~~~~k-i~~--~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (1972)
.|.+|...|..|+.+.. ... ..++.+++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL 179 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH
Confidence 47788888888874321 100 11345678888889888888999999999999864111111111 24688999874
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC-------hHhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000167 376 -KEKKPTVAESLTQTLQAMHKAGCLN-------LVDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (1972)
Q Consensus 376 -kdkk~~V~~aa~~aL~al~~~~~~~-------l~~il~~l~~~l~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (1972)
+.....+++.+..+|..+... +.. -...++.|...+.+.++ .++..++..|..+-.. ........
T Consensus 180 ~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 180 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 556778888888888877652 111 12456777788876654 4888877777654331 12222222
Q ss_pred hh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 442 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
.. ...+|.|+..|.+.+.+|++.|..+|+.+.
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 22 337899999999999999999998888775
No 99
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.33 E-value=8.2 Score=44.42 Aligned_cols=127 Identities=12% Similarity=0.164 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc
Q 000167 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1972)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (1972)
.+|.+.|.+++.++-+. .+.-|.++++.+.....|.+..|+...+..|+..+.. + ..++..+++.|...+.|..
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 68999999999976322 2456788999888877799999999888888887732 2 3578889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC----hH-------hHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000167 380 PTVAESLTQTLQAMHKA----GC--LN----LV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 380 ~~V~~aa~~aL~al~~~----~~--~~----l~-------~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (1972)
+.|...+..|...++.. -| .+ .. .+-..|+.-+++.|..+|..|+.|+.+++.
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 99998888888887764 11 11 12 233456666788999999999999999885
No 100
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=93.05 E-value=0.65 Score=58.49 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHHHHHHHh
Q 000167 301 ERKDAVAELTKLASTKRIAP---GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 375 (1972)
Q Consensus 301 eR~eaL~~L~~l~~~~ki~~---~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 375 (1972)
.+.+|...|..|+.+..-.. ..++..++.|...+...+..+...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 36788888888874321000 11345678888889888888999999999999763111111121 25689999974
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC-------hHhHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000167 376 -KEKKPTVAESLTQTLQAMHKAGCLN-------LVDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 441 (1972)
Q Consensus 376 -kdkk~~V~~aa~~aL~al~~~~~~~-------l~~il~~l~~~l~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 441 (1972)
......+++.+..+|..+..+ +.. -...++.|...|.+... .++..++..|..+-.. ........
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 556778888888888888763 211 12356777777876554 4888887777664431 22222222
Q ss_pred hh-hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 442 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
.. ...+|.|+..|.+.+.+|++.|..+|+.+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22 347899999999999999999999988775
No 101
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=92.78 E-value=3.6 Score=53.05 Aligned_cols=309 Identities=14% Similarity=0.175 Sum_probs=172.0
Q ss_pred hhhHHHHHHHHHhhhcchh---hhHHHHHHHHHHHhhcChhHH---HHHHHHhhhh-CCChHHHHHHHHHHHHHHHHhCC
Q 000167 679 KKCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGV 751 (1972)
Q Consensus 679 ~~~~~~il~~LveKlgd~K---~r~~a~~~L~~l~e~~~~~~v---l~~l~~~l~~-~KnpKv~~e~l~~L~~~i~~fG~ 751 (1972)
++.+...++.|++++.+.- -|..|...|..++..+..... +..++..+.+ ..+..+...+|+.|..++..-+.
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 3567788899999988754 377777788888766543322 4444554433 35677777788887776542111
Q ss_pred C--------CC-C-----------hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhcccHHHHHHHHH
Q 000167 752 S--------HL-K-----------LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA 811 (1972)
Q Consensus 752 ~--------~l-~-----------~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ 811 (1972)
. .. + -..-+..+..+ |+..+-.||-.++++|..|-..-+...+.. |-.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~-----------Il~ 163 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQI-----------ILV 163 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHH-----------HHH
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHH-----------HHh
Confidence 0 00 0 02235556677 899999999999999999876544333322 111
Q ss_pred HHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccHHHHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCC
Q 000167 812 EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891 (1972)
Q Consensus 812 efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~ 891 (1972)
.+. . .+.|+..+.|..-.+|.||+-.|..+... |..|+.-
T Consensus 164 ----~p~------------------------------g-----i~~Lv~lL~d~rE~iRneallLL~~Lt~~-n~~iQkl 203 (651)
T 3grl_A 164 ----SPM------------------------------G-----VSRLMDLLADSREVIRNDGVLLLQALTRS-NGAIQKI 203 (651)
T ss_dssp ----STT------------------------------H-----HHHHHGGGGCSSHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred ----Ccc------------------------------c-----HHHHHHHHhCchHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 000 0 14678888999999999999999988864 3444321
Q ss_pred -ChhhHHHHHHhccccc----hHHHHHHHHHHHHHHHHHcChhhHhhhh--hHHHHHHHHhCCCcH-------HHHH--H
Q 000167 892 -GTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKK-------HMRE--C 955 (1972)
Q Consensus 892 -~~~eL~~~L~~~L~Ds----N~~V~~~Al~~l~~La~alg~~~~~~~~--~llp~ll~~L~D~k~-------~Vr~--A 955 (1972)
.|...++.|...+... ...|+.-++.++..|...=..+ ..|.. ..+|.+...|..... .++. .
T Consensus 204 VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~ 282 (651)
T 3grl_A 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHL 282 (651)
T ss_dssp HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHH
Confidence 1233344444433222 3467888888888887542111 11111 133333333331111 1111 1
Q ss_pred HHHHHHHHHHhcCc-------------hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCC-----------hh
Q 000167 956 TLTVLDAWLAAVHL-------------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-----------AA 1011 (1972)
Q Consensus 956 a~~aL~~i~~~~~l-------------~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~-----------~~ 1011 (1972)
+..++..++...+. ..+++.+...+-.......+|.+++..++..+...+...+ ..
T Consensus 283 ~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~ 362 (651)
T 3grl_A 283 MLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPR 362 (651)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCE
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCc
Confidence 23333333222110 1134555666655544567899999988887765432100 01
Q ss_pred h-hHHHHHhhcCCC-CHHHHHHHHHHHHHHH
Q 000167 1012 H-LLKPASIAMTDK-SSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 1012 ~-ll~pl~~~L~D~-~~dVR~aA~~~l~~l~ 1040 (1972)
+ ++..+...+++. .-++|-+|..|+..++
T Consensus 363 p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 363 PAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1 222234445554 4689999999998776
No 102
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.48 E-value=0.036 Score=63.79 Aligned_cols=186 Identities=12% Similarity=0.063 Sum_probs=110.6
Q ss_pred HHhhhhCCChHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHhhChhHHhhhhccc
Q 000167 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (1972)
Q Consensus 723 ~~~l~~~KnpKv~~e~l~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lk 802 (1972)
+..+..+.+|.||..+...+ + ...+..+ +.|.++.||..|...+. .+.+..++.|-.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~---------~~~l~~L-~~D~~~~VR~~aA~~L~------~~~L~~ll~D~d 111 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------P---------VEALTPL-IRDSDEVVRRAVAYRLP------REQLSALMFDED 111 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------C---------GGGGGGG-TTCSSHHHHHHHHTTSC------SGGGGGTTTCSC
T ss_pred HHHHhcCCCHHHHHHHHHhC-------C---------HHHHHHH-ccCcCHHHHHHHHHHCC------HHHHHHHHcCCC
Confidence 33445788899998877643 1 1125566 89999999998886421 122333333333
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCCCCCCcccccccccH-HHHHhcCCCCHHHHHHHHHHHHHHH
Q 000167 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTP-TLVKSLESPDWKVRLESIEAVNKIL 881 (1972)
Q Consensus 803 p~ll~~Le~efek~~~~~~~~p~r~~r~~~~~~s~~~~~~d~lprvdIs~~l~~-~ll~~l~d~~Wk~R~eale~l~~ll 881 (1972)
+......-.. ++. .+...+.|.+|.+|..+...+
T Consensus 112 ~~VR~~aA~~-----------------------------------------l~~~~L~~L~~D~d~~VR~~aA~~l---- 146 (244)
T 1lrv_A 112 REVRITVADR-----------------------------------------LPLEQLEQMAADRDYLVRAYVVQRI---- 146 (244)
T ss_dssp HHHHHHHHHH-----------------------------------------SCTGGGGGGTTCSSHHHHHHHHHHS----
T ss_pred HHHHHHHHHh-----------------------------------------CCHHHHHHHHcCCCHHHHHHHHHhc----
Confidence 3332222221 011 122346788899998877631
Q ss_pred HHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000167 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (1972)
Q Consensus 882 ~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D~k~~Vr~Aa~~aL~ 961 (1972)
. .+ .|...++|.+..|+..++.. ++. +.+...++|....||.++...+
T Consensus 147 -------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~l- 194 (244)
T 1lrv_A 147 -------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASRL- 194 (244)
T ss_dssp -------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHHC-
T ss_pred -------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHhC-
Confidence 1 11 23455688888888876553 221 2233566899999998887652
Q ss_pred HHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000167 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1972)
Q Consensus 962 ~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1972)
+. +.+...+.++ +|++|..+...+. .+.+..|.|.++.||.+|.+.|
T Consensus 195 ------~~----~~L~~Ll~D~--d~~VR~~aa~~l~----------------~~~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 ------RG----DDLLELLHDP--DWTVRLAAVEHAS----------------LEALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp ------CG----GGGGGGGGCS--SHHHHHHHHHHSC----------------HHHHHHCCCCCHHHHHHHHCCC
T ss_pred ------CH----HHHHHHHcCC--CHHHHHHHHHcCC----------------HHHHHHccCCCHHHHHHHHHHh
Confidence 32 2344446666 6889988877642 1333445999999999887654
No 103
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.41 E-value=1.2 Score=46.98 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=81.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||.. .-.|..++... +....+.+.+|+++|+..|.+++..||.++..++...|..|...+ +.|+.
T Consensus 14 l~~~dw~~----~leicD~I~~~-----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 14 MSEQDWSA----IQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp CSSCCHHH----HHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 45678974 33455555431 222478999999999999999999999999999999999996543 56888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000167 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1972)
Q Consensus 940 ~ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~ 981 (1972)
.+.+.+.+ ....|++-+...+..|....+-..-+..+...|+
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 88877764 3678999999999999988753222333334443
No 104
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.35 E-value=0.91 Score=48.74 Aligned_cols=98 Identities=12% Similarity=0.296 Sum_probs=74.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||..=. +|..++.. .+....+.+.+|+++|+..|.+++..||.++..+++..|..|...+ +.|+.
T Consensus 28 ~~~~Dw~~~l----eicD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSLIM----DICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHHHH----HHHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHHHH----HHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 3456898533 35555542 1223478999999999999999999999999999999999987433 34666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+.. ..+.|++-+...+..|....+
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 66665554 557899999999999999875
No 105
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=92.13 E-value=23 Score=49.17 Aligned_cols=175 Identities=13% Similarity=0.094 Sum_probs=119.2
Q ss_pred HHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhchh-hhhhhHHHHHHHHhccC-----cHHHHHHHHHHHHH---HH
Q 000167 326 VCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEK-----KPTVAESLTQTLQA---MH 394 (1972)
Q Consensus 326 l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klkdk-----k~~V~~aa~~aL~a---l~ 394 (1972)
++..|.+.+. ..+-.....+|=++|.++..+....+ ++...+++.|+..+..+ |+.++....=.+.. |.
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 4455555555 33466778889999999977776544 78889999998776333 55555443323322 32
Q ss_pred HhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH-------HHHhhhhHHHHHHHHhcCCChHHHHHHHH
Q 000167 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAFS 467 (1972)
Q Consensus 395 ~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~-------l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~ 467 (1972)
.....-+..++..|+..+.+.++.|...++..+..+.+.|...- ..+++..++..+..+..+=.++-.-.-.+
T Consensus 558 ~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lye 637 (1073)
T 3gjx_A 558 RAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYE 637 (1073)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 22112366788888899999999999999999988888776542 12466777777778888888888888899
Q ss_pred HHHHHHHHhCchh-HHHhHhhccHHHHHHHHHHH
Q 000167 468 VLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMI 500 (1972)
Q Consensus 468 ~l~~l~~~~ge~~-~~~~l~~Ld~~~~kkI~e~~ 500 (1972)
+++.+....|... ...++..|=+.--.+..+.+
T Consensus 638 av~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~ 671 (1073)
T 3gjx_A 638 AVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSII 671 (1073)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998654 35566655443334444444
No 106
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=92.02 E-value=1.7 Score=45.90 Aligned_cols=98 Identities=15% Similarity=0.255 Sum_probs=76.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+.+.||.. +-+|..++.. .+....+.+.+|++||+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 24 l~~~dw~~----ileicD~I~~-----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWAS----INGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHHH----HHHHHHHGGG-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHC-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45568983 3334444432 223347899999999999999999999999999999999998643 456888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+.+.+.+ ....|++-+...+..|....+
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 88888865 457899999999999999875
No 107
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=91.67 E-value=0.7 Score=48.31 Aligned_cols=98 Identities=16% Similarity=0.305 Sum_probs=75.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||.. +-+|..++.. .+..-.+.+.+|+++|+..|.++...||.++..+++..|..|...+ +.|+.
T Consensus 18 l~~~dw~~----ileicD~I~~-----~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWGL----ILDICDKVGQ-----SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHHH----HHHHHHHHTT-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHC-----CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45678984 3334444431 2223478999999999999999999999999999999999987543 55666
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+....+.|++-+...+..|.....
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 66666655778899999999999998765
No 108
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.47 E-value=9.7 Score=46.34 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc
Q 000167 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1972)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (1972)
.+|.+.|.+++.|+-+. .+.-|.++++.+.....|.+..|+...+..|++.+.. + ..++..+++.|...+.|..
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999975221 2345667788887777799999999999999888753 2 2457888889999999999
Q ss_pred HHHHHHHHHHHHHHHHh------cCCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000167 380 PTVAESLTQTLQAMHKA------GCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 380 ~~V~~aa~~aL~al~~~------~~~~-----------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (1972)
+.|...+..|...++.. .+.. +..+-..|+..+++.|..+|..|+.|+.+++.
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99988888888777743 0111 12344566677788999999999999999885
No 109
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=90.09 E-value=0.61 Score=49.20 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc---cChhHHHHhhhhhhcC------CChhHHHHHHHHHHHH
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~---~~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (1972)
.+..++..|.+.+.|+||+++.-+|..|-.++++=|... |.-+.|+..|.+++.. .+..||+....++.+-
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 466788889999999999999999999999999888632 4457899999999964 6899999999988877
Q ss_pred HHhhCC
Q 000167 196 CRWIGK 201 (1972)
Q Consensus 196 y~~lG~ 201 (1972)
+...+.
T Consensus 125 ~~~f~~ 130 (149)
T 3g2s_A 125 TVGLPE 130 (149)
T ss_dssp HHHCTT
T ss_pred HHHhCC
Confidence 766654
No 110
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=89.93 E-value=75 Score=43.74 Aligned_cols=423 Identities=16% Similarity=0.109 Sum_probs=218.2
Q ss_pred CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcCh----hhHhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHHHH
Q 000167 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP----AVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLA 965 (1972)
Q Consensus 891 ~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~----~~~~~~~~llp~ll~~L~-D~k~~Vr~Aa~~aL~~i~~ 965 (1972)
..+.++...+...+.|+.+.-...|.++++.|..+... ..+..-.-+.|.+-+.+. +-.+.....=..|+..+..
T Consensus 504 ~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~ 583 (997)
T 1vsy_5 504 LNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPA 583 (997)
T ss_dssp CCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhc
Confidence 33567777777777888888888888988888765432 233444556677777777 4555555555556666666
Q ss_pred hcCchhhHHHHHHHHhc----------CCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCHHHHHHHHHH
Q 000167 966 AVHLDKMVPYVTTALTD----------AKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1972)
Q Consensus 966 ~~~l~~ll~~l~~~L~~----------~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~ 1035 (1972)
...+.++- .|.+.|.+ ..+....|..++..+...+. +. .++...++..+. ++.....||++....
T Consensus 584 ~~DprR~~-~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~-wr-~~~~~~~l~~~~--l~h~y~~VRe~Ig~~ 658 (997)
T 1vsy_5 584 VVDLRRSK-TFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSME-FR-APDVGKLFDELV--FDHPYDQVRQAVAKL 658 (997)
T ss_dssp HSCGGGCH-HHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHT-TS-SCCCHHHHHHCC--SCCSCHHHHHHHHHH
T ss_pred CCChhhhH-HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhc-cc-cccHHHHHHHHH--hCCChHHHHHHHHHH
Confidence 66655543 34443310 11112246666666544443 22 223445555444 888999999999999
Q ss_pred HHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCcCCCCCCC
Q 000167 1036 IVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGN----RAISSRVIPTK 1111 (1972)
Q Consensus 1036 l~~l~~~~G~~~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~ 1111 (1972)
|..+...--. .... .....++...++.+... .+.. ..+........ +-..-+... .
T Consensus 659 L~~i~~~~~~-------~~~~-~~~~~l~~~~~~~~~~~---~~~~--------~~~~~~~~~i~~~f~~l~~~~~~~-~ 718 (997)
T 1vsy_5 659 LTTLVQNQSN-------PSIS-DPTTLLEAERNDPDGLG---LPLK--------SVPEKVDAYIKKQFEIIKNLEDSV-V 718 (997)
T ss_dssp HHHHHHTSCC-------CCBS-CHHHHHHHHHSCSSSSC---CCSS--------CCCHHHHHHHHHHHHHHTGGGGTT-S
T ss_pred HHHHHHhhcc-------cCCC-CHHHHHHhhcccccccc---Cccc--------cCcchHHHHHHHHHHHHHHhhhcc-c
Confidence 8877765410 1111 11122222111100000 0000 00000000000 000000000 0
Q ss_pred CCCCCcccccchhhhhhhhccccCCCChHHhhhhhcccccccCCChhhHHHHHHHHHHhhhHHHHHhhcC-ccHHH--HH
Q 000167 1112 GARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS-TDFKK--QV 1188 (1972)
Q Consensus 1112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~~~~e~ve~L~~q~~~~~~~~l~~~lf~-~d~k~--~~ 1188 (1972)
.-.+ +.. ...+..+.-.-+++|-...-..-.. .++.++++.-++-.+++ .+.++ .+
T Consensus 719 ~~~~-------------~~~----~~s~y~~~~kTvl~wl~~~l~~~~~----~~l~~~~~~~llP~ll~l~~~~d~~eL 777 (997)
T 1vsy_5 719 GLNP-------------QQF----IKTDYFYRTSTIFYWIKEMARGPNK----VLLVPYLVDYVLPFLIGLVKHKDVCAL 777 (997)
T ss_dssp SCCS-------------TTT----TTSHHHHHHHHHHHHHHHHSSGGGH----HHHHHHHTTTTTTTTCTTSSCSHHHHH
T ss_pred ccCc-------------ccc----chHHHHHHHHHHHHHHHHHhcCCCc----cchhhhhHHHHHHHHHHHhhcCcHHHH
Confidence 0000 000 0001111111123443322111110 11222222223333333 11111 12
Q ss_pred HHH--HHHHHhcCcchhhHHHHHHHHHHHHHHhhc-CcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh
Q 000167 1189 DGL--EMLQKALPSIRKDIIEVLDILLRWFVLQFC-KSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265 (1972)
Q Consensus 1189 ~al--~~L~~~l~~~~~~~i~~lDlllk~~~lr~~-dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L~~K~ 1265 (1972)
+.+ ..+-..+....- .-..+|.++.-+.--.. ++|. +=..+|.|++.++= .+-+.|++.+-..++-.++.-+
T Consensus 778 ~~~~a~~~l~~ls~~~~-~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f---~n~f~l~~~~~~~i~~~v~~~L 852 (997)
T 1vsy_5 778 ASLDPVRLYAGLGYMPI-RKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLS---AELLQLTEEEKNKILEFVVSNL 852 (997)
T ss_dssp TTCCSHHHHHHTSSSCC-CHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHH---HHTTTSCTTHHHHTHHHHTTTT
T ss_pred HhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHH---HHHHHcCHHHHHHHHHHHHHHh
Confidence 211 111222222110 01224445544422122 4566 77788888876543 4457788888888888888889
Q ss_pred CCCh-HHHHHHHHHHHHHHhhcC-CccccHHHH---Hhhh-c-----------CCChhhHHHHHHHHHHHHHhhCCCccc
Q 000167 1266 GHNI-EKVREKMRELTKQIVNFY-SATKTLPYI---LEGL-R-----------SKNNRTRIECVDLVGFLIDHHGAEISG 1328 (1972)
Q Consensus 1266 Gd~k-~~vr~~v~~il~~~~~v~-~~skvf~~l---~~gl-~-----------sKN~r~R~ecl~~l~~li~~~G~~~~~ 1328 (1972)
+|+. -.||+....+|-.+.... +...+-.++ .+.+ + +|+-++|-.++--|+.+|..|...++-
T Consensus 853 ~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~ 932 (997)
T 1vsy_5 853 YNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPL 932 (997)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSC
T ss_pred cCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999 999999999998887766 533333332 2233 2 233368899999999999999998743
Q ss_pred c---cchHHHHHhhhcCCchHHHHHHHHHHHHHHHHhCHH
Q 000167 1329 Q---LKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 1365 (1972)
Q Consensus 1329 ~---~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~ 1365 (1972)
| +..|..+|.+..|..+ |++.+-.||.+=.+-.-|.
T Consensus 933 P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 933 PPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp CTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTT
T ss_pred CcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchh
Confidence 3 3567899999999665 9999999999866655443
No 111
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.83 E-value=2.1 Score=46.21 Aligned_cols=110 Identities=14% Similarity=0.221 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHHH
Q 000167 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSD 940 (1972)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp~ 940 (1972)
.+.||.. +-+|..++... +....+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+..
T Consensus 27 ~~~Dw~~----ileicD~I~~~-----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 27 RQEDWEY----IIGFCDQINKE-----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp SSCCHHH----HHHHHHHHHHS-----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCcCHHH----HHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 4568974 33455555431 22347899999999999999999999999999999999998753 3457778
Q ss_pred HHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000167 941 ILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1972)
Q Consensus 941 ll~~L~D------~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~ 981 (1972)
++..+.. ....|++-+...+..|....+-..-+..+...|+
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 8877763 3578999999999999998764333333444443
No 112
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=88.15 E-value=28 Score=40.00 Aligned_cols=151 Identities=12% Similarity=0.092 Sum_probs=105.3
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhh
Q 000167 857 TLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1972)
Q Consensus 857 ~ll~~l~d-~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~ 935 (1972)
+++..... .+ .+|.+.|.++++++-.. .|..|.++++.+.....|.+..|+......|.+.+.. -..++.
T Consensus 19 ~lln~A~~~~~-~~kl~~L~qa~el~~~~----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~l~~ 89 (257)
T 3gs3_A 19 DWCNELVIASP-STKCELLAKVQETVLGS----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVELLP 89 (257)
T ss_dssp HHHHHHTTCCH-HHHHHHHHHHHHHHTTT----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHH
T ss_pred HHHHHhhhcCc-HHHHHHHHHHHHHHHcc----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 45544433 34 68999999999977532 3456788888888877899999999998888888733 235778
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhHHHHHHHHHHHHhccCCCCCChhhhH
Q 000167 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014 (1972)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~-~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll 1014 (1972)
.+++.+...+.|..+.|...++.|...++. .++..+. ++. .+..-..+|.|+.. +
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~---------~~l~~i~~~~~-~~~~~~~~W~~m~~--------------l 145 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYK---------NGLQYLCSLME-PGDSAEQAWNILSL--------------I 145 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---------HHHHHHTTSSS-CCHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---------HHHHHHhcCCC-CcchHHHHHHHHHH--------------H
Confidence 888999999999999999998888877654 3344433 332 22234678888764 2
Q ss_pred HH-HHhhcCCCCHHHHHHHHHHHHHHH
Q 000167 1015 KP-ASIAMTDKSSDVRKAAEACIVEIL 1040 (1972)
Q Consensus 1015 ~p-l~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1972)
+- ++..+...+..||-.+.+.+..++
T Consensus 146 K~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 146 KAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 22 444566778889988877665544
No 113
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.10 E-value=1.2 Score=46.59 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---ccChhHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhCC
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~---~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~ 201 (1972)
++..++..|.+.+.|+||.++.-+|..|-.++++=|.. .+.-+.|+..+.+++...++.||+....++.+-+...+.
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 46677888889999999999999999999999987763 234477898899999889999999999998877766654
No 114
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=87.63 E-value=0.91 Score=49.12 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---ccChhHHHHhhhhhhc------CCChhHHHHHHHHHHHH
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFD------HQDQNVRASSKGLTLEL 195 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~---~~~~k~il~~l~~ll~------~~d~~VR~~a~~l~~el 195 (1972)
++..++..|.+.+.|+||+++.-+|..|-.++++=|.. .|.-+.|+..|.+++. ..+..||+.+..++.+-
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999986652 2344789999999986 35789999999998887
Q ss_pred HHhhCC
Q 000167 196 CRWIGK 201 (1972)
Q Consensus 196 y~~lG~ 201 (1972)
+...+.
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 777654
No 115
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.51 E-value=1.9 Score=45.40 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=62.9
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCc---cChhHHHHhhhhhhcC------CChhHHHHHHHHHHHH
Q 000167 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLEL 195 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~---~~~k~il~~l~~ll~~------~d~~VR~~a~~l~~el 195 (1972)
++..++..|.+.+.|+||+++.-+|..|-.++++=|... +.=+.|+..|.+++.. .+..||+....++.+-
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 466778888899999999999999999999999977632 3447899999999874 5889999988887776
Q ss_pred HHhhCC
Q 000167 196 CRWIGK 201 (1972)
Q Consensus 196 y~~lG~ 201 (1972)
+...+.
T Consensus 115 ~~~f~~ 120 (148)
T 1mhq_A 115 TVWFPE 120 (148)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 666543
No 116
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=86.40 E-value=3.7 Score=43.72 Aligned_cols=98 Identities=17% Similarity=0.379 Sum_probs=73.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~-DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (1972)
+.+.||..=. +|..++.. .+....+.+.+|+++|+ ..|.+++..||.++..+++..|..|...+ +.|+
T Consensus 29 l~~~Dw~~~l----eicD~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWALNM----EICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHHHH----HHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHHHH----HHHHHHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 3456898533 34455542 12234889999999997 68999999999999999999999997633 3477
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcC
Q 000167 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.. +++.+.. ....|++-+...+..|....+
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 76 5666643 345799999999999998875
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=86.36 E-value=20 Score=43.60 Aligned_cols=142 Identities=8% Similarity=0.091 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHHHhCC
Q 000167 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (1972)
Q Consensus 868 k~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~~L~D 947 (1972)
.++.+.|..+++++-.. .|..+.+++..+...-.|.+..|+...+.+|.+.+.. -..++..+++.+...|.|
T Consensus 40 ~~Kl~~L~q~~EL~l~~----dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d 111 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK----DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRD 111 (386)
T ss_dssp THHHHHHHHHHHHHHTT----CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC
Confidence 47999999999987532 4456788888888888899999999999999888753 234567888888889999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCCH
Q 000167 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSS 1026 (1972)
Q Consensus 948 ~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~-~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~ 1026 (1972)
..+.|...++.|...++ |.++..+. ++. ....-..+|.|+... +. -++..+...+.
T Consensus 112 ~d~~V~K~~I~~~tslY---------pl~f~~i~~~~~-~~~~~e~~W~~m~~l----------K~---~Il~~~ds~n~ 168 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLY---------KVALQWMVKSRV-ISELQEACWDMVSAM----------AG---DIILLLDSDND 168 (386)
T ss_dssp SSHHHHHHHHHHHHHHH---------HHHHHHHHHC-C-CCHHHHHHHHHHHHH----------HH---HHHHGGGCSSH
T ss_pred CCHHHHHHHHHHHHHHH---------HHHHHHHhcCCC-cchhHHHHHHHHHHH----------HH---HHHHHhccCCc
Confidence 99999999888887764 33333433 331 223346788888642 11 14444666788
Q ss_pred HHHHHHHHHHHHHH
Q 000167 1027 DVRKAAEACIVEIL 1040 (1972)
Q Consensus 1027 dVR~aA~~~l~~l~ 1040 (1972)
.||-.+.+.+..++
T Consensus 169 GVrl~aiKFle~VI 182 (386)
T 3o2t_A 169 GIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 89988877665544
No 118
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=86.24 E-value=4.8 Score=43.11 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=60.2
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHh
Q 000167 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSV 476 (1972)
Q Consensus 399 ~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~~ 476 (1972)
.+..+.+..|..-++++||.+...+|..|..|+.+|++..-..+ -+.++..+++.+.. .++.||+...+.+......+
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 34455556666678899999999999999999999986532111 14455556666654 77899999999998888888
Q ss_pred Cch
Q 000167 477 GMR 479 (1972)
Q Consensus 477 ge~ 479 (1972)
+..
T Consensus 128 ~~~ 130 (163)
T 1x5b_A 128 QKD 130 (163)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
No 119
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=85.61 E-value=6.2 Score=44.64 Aligned_cols=98 Identities=16% Similarity=0.328 Sum_probs=70.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhh--hhhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~--~~~llp 939 (1972)
+.+.||..= -+|-.++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.|+.
T Consensus 21 ~~~~dw~~i----leicD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWESI----LQICDLIRQ-----GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHHHH----HHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHHHH----HHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 345689843 335555542 122248899999999999999999999999999999999987643 234554
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+.+.++. ....|++-+...+..|.....
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 44444432 446789999899989887764
No 120
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=83.52 E-value=7.1 Score=44.02 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=104.4
Q ss_pred hhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHhcCchhh
Q 000167 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAAVHLDKM 972 (1972)
Q Consensus 894 ~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll~-~L~D~k~~Vr~Aa~~aL~~i~~~~~l~~l 972 (1972)
.+++........|..-.|+..|+.+|+.+ . ....+++.+.. .-.|..=.||+.+..++..++...+++..
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~ 140 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKA 140 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 55666555666666678888898877765 1 23556777776 55677778999999999999987788888
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHH
Q 000167 973 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (1972)
Q Consensus 973 l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~-~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~ 1051 (1972)
++.+..-+.++ |+.+|..+...+.. +...+........+.|++ ....|++.-||++..-.|..+.+.-+ +.+..+
T Consensus 141 l~~~~~W~~d~--n~~VRR~Ase~~rp-W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P-d~V~~~ 216 (240)
T 3l9t_A 141 LPIIDEWLKSS--NLHTRRAATEGLRI-WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP-DLVKIE 216 (240)
T ss_dssp HHHHHHHHHCS--SHHHHHHHHHHTCS-GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHhhHH-HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH-HHHHHH
Confidence 88888888877 68899888877643 222222222344555644 46699999999999999888766543 455666
Q ss_pred hcc
Q 000167 1052 LKD 1054 (1972)
Q Consensus 1052 l~~ 1054 (1972)
+..
T Consensus 217 ~~~ 219 (240)
T 3l9t_A 217 LKN 219 (240)
T ss_dssp HHT
T ss_pred HHH
Confidence 644
No 121
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=83.49 E-value=10 Score=43.05 Aligned_cols=144 Identities=9% Similarity=-0.028 Sum_probs=95.0
Q ss_pred HHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhchhh-hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh--
Q 000167 327 CRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-- 401 (1972)
Q Consensus 327 ~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-- 401 (1972)
++.|.+.+. |....+...|+.++..|+.+-...-.. .-...+|.|+..++.....+++.+..||..+... +..-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHH
Confidence 344555666 433378888888999988653221111 1224679999999999999999999999998752 1000
Q ss_pred ----HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHHh-------cC---------CCh
Q 000167 402 ----VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-------ND---------GTP 459 (1972)
Q Consensus 402 ----~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-------~D---------s~~ 459 (1972)
...+|.|...|. ++++.++..+...|..+-.... +.. ..+.-+|.|+..+ .| .++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~---i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL---MITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH---HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH---HHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 125677888887 5789999998877766533221 222 2334566666543 12 367
Q ss_pred HHHHHHHHHHHHHHH
Q 000167 460 EVRDAAFSVLAAIAK 474 (1972)
Q Consensus 460 ~VR~aA~~~l~~l~~ 474 (1972)
+|+..|..||..+..
T Consensus 166 ~v~~na~~~L~nLss 180 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987754
No 122
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=83.30 E-value=4.6 Score=45.47 Aligned_cols=98 Identities=16% Similarity=0.311 Sum_probs=71.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh--hhHHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~--~~llp 939 (1972)
+.+.||..-.+ |-+++.. .+....+.+.+|+++|+..|.+++..||.++..++...|..|...+ +.|+.
T Consensus 18 ~~~~dw~~~le----icd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~ 88 (220)
T 1dvp_A 18 RLEPDWPSILL----ICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (220)
T ss_dssp CSSCCHHHHHH----HHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCcCHHHHHH----HHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHH
Confidence 34578985433 5555542 1223489999999999999999999999999999999999886432 33555
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000167 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 940 ~ll~~L~D-~k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.+...+++ ....|++.+...+..|.....
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 89 MFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 55554443 446799999999999987754
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.74 E-value=7.1 Score=48.30 Aligned_cols=129 Identities=14% Similarity=0.177 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000167 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (1972)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~ 402 (1972)
-.+.+.++..++.|..+.|+..|++-|-.+|+. .++.-+.-.|...+..-.+.-.+.+..+|..++.. ...
T Consensus 63 ~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~---Dpk 133 (507)
T 3u0r_A 63 ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM---DAK 133 (507)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc---ChH
Confidence 346778888889999999999999999888876 34667777777778777888899999999999985 334
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCCChH
Q 000167 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPE 460 (1972)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~ 460 (1972)
..+..++..+.+....+|..++.||..-+...++..+.+-+ .-++..+.+.|.|-..+
T Consensus 134 ~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~ 192 (507)
T 3u0r_A 134 GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGE 192 (507)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHH
Confidence 44555554444457899999999999888776665444322 33666777888766553
No 124
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=80.78 E-value=11 Score=42.38 Aligned_cols=150 Identities=12% Similarity=0.061 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH-HhccCcHHHHHHHHHHHHHHHHhcCCCh
Q 000167 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE-KLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1972)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~-klkdkk~~V~~aa~~aL~al~~~~~~~l 401 (1972)
..+++.....+..|..-.|+..|+.+|+.+ . ....+++.|-. -..|+.=.|++.+..++..++.. ..+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~--~~p 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKK--IEY 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHh--cCH
Confidence 456666666777766678999999977766 2 23567777776 45788889999999999998863 345
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhH
Q 000167 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1972)
Q Consensus 402 ~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~ 481 (1972)
+.+++.+..=+++.|+.||+.+...+.- ....+ .+......++|.|....+|+..-||++-.-.|.-+.+.-++- +
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~-V 213 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRI-WTNRP--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL-V 213 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCS-GGGST--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH-H
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHH-Hhccc--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH-H
Confidence 6677777777889999999988776542 11111 112233668899999999999999999999998888877764 4
Q ss_pred HHhHhh
Q 000167 482 ERSIEK 487 (1972)
Q Consensus 482 ~~~l~~ 487 (1972)
..++..
T Consensus 214 ~~~~~~ 219 (240)
T 3l9t_A 214 KIELKN 219 (240)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 455553
No 125
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=78.54 E-value=13 Score=42.14 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcCCCh------HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000167 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~--~V~~aa~~aL~al~~~~~~~l------~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (1972)
+...+|.+++.+..... .++..+..++..+... .... ...+|.+...|++.++.++..++..|..+....+
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 45568889998876665 7776666777777643 1111 1356889999999999999999988887654322
Q ss_pred hhHHHHhh-hhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Q 000167 436 KAAVLKVH-KDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 436 ~~~l~~~l-~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~ 475 (1972)
.. -.... .-.+|.|+++|.+ .+.++|+.|..+||.+..+
T Consensus 85 ~n-k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 85 DN-KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HH-HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HH-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 11 11111 3468899999974 6899999999999988743
No 126
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=78.10 E-value=59 Score=38.54 Aligned_cols=204 Identities=11% Similarity=0.104 Sum_probs=125.3
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc---CCCCCCCC----hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhh
Q 000167 290 FWEGVKATKWSERKDAVAELTKLAS---TKRIAPGD----FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~---~~ki~~~~----y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~ 362 (1972)
+...+..-+|.-|+++..-+..+.. +.+....+ ..+++..|.+.-.+..+.+-... .+...++ ++.
T Consensus 83 Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir-----~e~ 155 (341)
T 1upk_A 83 LVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIR-----HEP 155 (341)
T ss_dssp HHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHT-----SHH
T ss_pred HHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHH-----hHH
Confidence 3444567789999999988887763 11211112 24777777777776654332222 2222211 112
Q ss_pred hhhh-----HHHHHHHHhccCcHHHHHHHHHHHHHHHHh--------cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 000167 363 SSRF-----LLPVLLEKLKEKKPTVAESLTQTLQAMHKA--------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTF 429 (1972)
Q Consensus 363 ~~~~-----llp~LL~klkdkk~~V~~aa~~aL~al~~~--------~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~ 429 (1972)
.++. .+-.+++-....+=.|...|..++..++.. ...+.+.++..+..-+.+.|.-+|++++.+|..
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLge 235 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 2221 122444555556666777777777766542 013467788888888899999999999999999
Q ss_pred HHHh-cChhHHHHhh--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhhccHHHHHHHHHHHhcC
Q 000167 430 CIET-SSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1972)
Q Consensus 430 ~l~~-~~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (1972)
++-. +......+++ +.-+..++.+|.|....++-.|+..+-.|.. -++++ .+...=|- .-|.|+-+++.+-
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA-NP~K~-~~I~~IL~-~Nr~kLl~fl~~f 309 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA-NPNKT-QPILDILL-KNQAKLIEFLSKF 309 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH-CSSCC-HHHHHHHH-HTHHHHHHHHHHT
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee-CCCCC-hHHHHHHH-HHHHHHHHHHHhC
Confidence 8864 2333444554 5577889999999999999999999877664 33322 12222222 2345566666543
No 127
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=76.71 E-value=1 Score=51.79 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=75.7
Q ss_pred hhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHH
Q 000167 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (1972)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 371 (1972)
..+.+.+|..|..+...+ .. ..|...++|.+..|+..++.. +.. +.+
T Consensus 129 ~L~~D~d~~VR~~aA~~l---------~~-------~~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll 175 (244)
T 1lrv_A 129 QMAADRDYLVRAYVVQRI---------PP-------GRLFRFMRDEDRQVRKLVAKR-------LPE----------ESL 175 (244)
T ss_dssp GGTTCSSHHHHHHHHHHS---------CG-------GGGGGTTTCSCHHHHHHHHHH-------SCG----------GGG
T ss_pred HHHcCCCHHHHHHHHHhc---------CH-------HHHHHHHcCCCHHHHHHHHHc-------CCH----------HHH
Confidence 335788999999888742 11 134455669999888887664 111 223
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHH
Q 000167 372 LEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICM 451 (1972)
Q Consensus 372 L~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~ 451 (1972)
...++|....||.++...+ +. +.|...+++.+|+||..+..-+. .+.+.
T Consensus 176 ~~ll~D~d~~VR~aaa~~l---------~~----~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~ 224 (244)
T 1lrv_A 176 GLMTQDPEPEVRRIVASRL---------RG----DDLLELLHDPDWTVRLAAVEHAS------------------LEALR 224 (244)
T ss_dssp GGSTTCSSHHHHHHHHHHC---------CG----GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHH
T ss_pred HHHHcCCCHHHHHHHHHhC---------CH----HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHH
Confidence 3456899999998776542 11 23445578999999988776542 13454
Q ss_pred HHhcCCChHHHHHHHHHHH
Q 000167 452 ECLNDGTPEVRDAAFSVLA 470 (1972)
Q Consensus 452 k~l~Ds~~~VR~aA~~~l~ 470 (1972)
.+ .|.+..||.++.+.||
T Consensus 225 ~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 225 EL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HC-CCCCHHHHHHHHCCC-
T ss_pred Hc-cCCCHHHHHHHHHHhC
Confidence 55 9999999999987664
No 128
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=72.34 E-value=35 Score=36.15 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=61.4
Q ss_pred CCChHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHH-HHHHhc---CCChHHHHHHHHHHHH
Q 000167 398 CLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPI-CMECLN---DGTPEVRDAAFSVLAA 471 (1972)
Q Consensus 398 ~~~l~~il~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~-l~k~l~---Ds~~~VR~aA~~~l~~ 471 (1972)
..+..+.+..|..-++ ++|+.+...++..|..|+.+|++..-... -+.++.- +++.+. ++...||+.+.+.+..
T Consensus 48 ~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 48 EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 3556677777777887 59999999999999999999986532211 2456665 666663 4556999999999998
Q ss_pred HHHHhCch
Q 000167 472 IAKSVGMR 479 (1972)
Q Consensus 472 l~~~~ge~ 479 (1972)
....++..
T Consensus 128 W~~~f~~~ 135 (157)
T 1elk_A 128 WADAFRSS 135 (157)
T ss_dssp HHHHHTTC
T ss_pred HHHHcCCC
Confidence 88888743
No 129
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=71.61 E-value=4.8 Score=53.42 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchh
Q 000167 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1972)
Q Consensus 403 ~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~ 480 (1972)
.++|.| .-|++.++..|..++..|..+++......+.-.-+.+.+.+..+|.|++.+||.+|..+|..+...-|.+.
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 456644 45889999999999999999875321111211123455667889999999999999999999988777654
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=70.69 E-value=30 Score=38.94 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=60.9
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHH
Q 000167 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 398 ~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~-Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
..+..+.+..|..-++++||.+...+|..|..|+.+++...... .-+.++..|.+.++ ..+++||+...+.+......
T Consensus 40 ~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 40 DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 35567777778888889999999999999999999988642221 12344444544443 46789999999999999988
Q ss_pred hCch
Q 000167 476 VGMR 479 (1972)
Q Consensus 476 ~ge~ 479 (1972)
+..+
T Consensus 120 f~~~ 123 (226)
T 3zyq_A 120 FRNE 123 (226)
T ss_dssp TTTC
T ss_pred hCCC
Confidence 8654
No 131
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=70.54 E-value=11 Score=39.80 Aligned_cols=98 Identities=16% Similarity=0.351 Sum_probs=71.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHcChhhHhhh--hhHH
Q 000167 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (1972)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D-sN~~V~~~Al~~l~~La~alg~~~~~~~--~~ll 938 (1972)
+.+.||.. +-+|..++.. . +....+.+.+|++||.. .|.++...||.++..+++..|..|...+ +.|+
T Consensus 29 l~~~Dw~~----ileicD~In~--~---~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 29 VQTEDWGQ----FMHICDIINT--T---QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp CCSCCHHH----HHHHHHHHHH--S---TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCccHHH----HHHHHHHHhC--C---CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 45568983 4445555543 1 22348899999999984 5888999999999999999999987543 3566
Q ss_pred HH-HHHHhCCC---cHHHHHHHHHHHHHHHHhcC
Q 000167 939 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVH 968 (1972)
Q Consensus 939 p~-ll~~L~D~---k~~Vr~Aa~~aL~~i~~~~~ 968 (1972)
.- +.+.+.++ ...|++-+...+..|.....
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 54 45555443 34699999999999998775
No 132
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=70.35 E-value=47 Score=36.45 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=81.4
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcC--CCCccchHHHHHHHHHHHHHHHHHcCCCchhhH
Q 000167 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML--PGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1972)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~lv~~L~~~--p~~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~ 682 (1972)
++.+.+.+ ..|.+|++.|.. + .....-..-+++++... -.++ |..+....++++.+++.+-.-+.+.++
T Consensus 15 ~It~a~~~---~~r~~aL~sL~~---D-~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~lepYl 85 (196)
T 4atg_A 15 KILSMIKS---DMKDIAIECLEK---E-SGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVFIDPYL 85 (196)
T ss_dssp HHHHHHTS---TTHHHHHHHHHH---C-SSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCCCGGGH
T ss_pred HHHHHHHh---HHHHHHHHHHhc---C-CChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCChHHHH
Confidence 44455555 458888887762 1 11112233344444321 1222 677888889999999986444566778
Q ss_pred HHHHHHHHhhhcc-----hhhhHHHHHHHHHHHhhcChh--H----HHHHHHHhhhh-CCChHHHHHHHHHHHH
Q 000167 683 VLCLLGISERVAD-----IKTRAHAMKCLTTFSEAVGPG--F----IFERLYKIMKD-HKNPKVLSEGILWMVS 744 (1972)
Q Consensus 683 ~~il~~LveKlgd-----~K~r~~a~~~L~~l~e~~~~~--~----vl~~l~~~l~~-~KnpKv~~e~l~~L~~ 744 (1972)
..++|.++..+-. ..+|+-|.++|..+|..++.. . +...+.+.+.+ .++.-.+-+++..|..
T Consensus 86 H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~ 159 (196)
T 4atg_A 86 HQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI 159 (196)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 7777777766543 357999999999999987652 2 44444444433 5677777787776543
No 133
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.37 E-value=34 Score=38.27 Aligned_cols=95 Identities=8% Similarity=0.062 Sum_probs=63.5
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhh--hhHHHHH
Q 000167 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (1972)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~L 371 (1972)
+.+.+|.--.+ |..+++.. +..-.+.+++|+++|...|.++...|+.+++.+.+.-|..|...+ +.++..|
T Consensus 18 ~~~~dw~~~le----icd~i~~~---~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l 90 (220)
T 1dvp_A 18 RLEPDWPSILL----ICDEINQK---DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF 90 (220)
T ss_dssp CSSCCHHHHHH----HHHHHHTT---SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHHHHH----HHHhhcCC---CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHH
Confidence 35678875433 44444321 224568999999999999999999999999999999998886432 2344444
Q ss_pred HHHhcc-CcHHHHHHHHHHHHHHHH
Q 000167 372 LEKLKE-KKPTVAESLTQTLQAMHK 395 (1972)
Q Consensus 372 L~klkd-kk~~V~~aa~~aL~al~~ 395 (1972)
...+++ ....|++.+.+.+..|..
T Consensus 91 ~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 91 SSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 433332 345666666666666654
No 134
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=66.59 E-value=90 Score=40.37 Aligned_cols=169 Identities=15% Similarity=0.136 Sum_probs=96.2
Q ss_pred hhcc-CChHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHhc-c-cCHHHHHHHHHHHHHHHHHhhhchhhhhhhHH
Q 000167 293 GVKA-TKWSERKDAVAELTKLASTKRIAPGDFT-EVCRTLKKLIT-D-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1972)
Q Consensus 293 ~l~s-~kWkeR~eaL~~L~~l~~~~ki~~~~y~-~l~~~L~k~l~-D-~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (1972)
++.+ +--.+|++|+..|+.+.+.. +...+ .-++.|...+. | .+.-++..++.++-.+... ...+.. ..
T Consensus 29 Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~--~~~~~~-~~-- 100 (651)
T 3grl_A 29 RVASSTLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN--DEEEEV-EE-- 100 (651)
T ss_dssp HHHHCCSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC--C----------
T ss_pred HHhhccchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC--CCcccc-cc--
Confidence 3443 66778888888888875421 11122 12455555555 3 3555555544444443221 111100 00
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh---hhh
Q 000167 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV---HKD 445 (1972)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~---l~~ 445 (1972)
.......+-+..-.+.+.+. .+-++.++..|+..+-.+|..+++.|..++...+.. .+++ .+.
T Consensus 101 --------~~~~~~~~~~~~~~d~f~~~-----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~~p~ 166 (651)
T 3grl_A 101 --------NSTRQSEDLGSQFTEIFIKQ-----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILVSPM 166 (651)
T ss_dssp ---------------CHHHHHHHHHHHS-----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHSTT
T ss_pred --------cccccchHHHHHHHHHHHcC-----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHhCcc
Confidence 00000011112222344433 345677888899999999999999999988765432 3322 246
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhH
Q 000167 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485 (1972)
Q Consensus 446 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l 485 (1972)
-++.|+..|.|+...+|..|.-.|..+.+ ++..+.+++
T Consensus 167 gi~~Lv~lL~d~rE~iRneallLL~~Lt~--~n~~iQklV 204 (651)
T 3grl_A 167 GVSRLMDLLADSREVIRNDGVLLLQALTR--SNGAIQKIV 204 (651)
T ss_dssp HHHHHHGGGGCSSHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHhc--CCHHHHHHH
Confidence 78999999999999999999988887775 344444443
No 135
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=65.79 E-value=9.7 Score=40.18 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHhh-cCChhhHHHHHHHHHHHHHHhCCC---ccChhHHHHh-hhhhhcCC---ChhHHHHHHHHHHHHH
Q 000167 125 AVDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKM-LPELFDHQ---DQNVRASSKGLTLELC 196 (1972)
Q Consensus 125 ~~~~v~~~L~~~~~-~KnpKv~~~~l~~l~~~l~~fG~~---~~~~k~il~~-l~~ll~~~---d~~VR~~a~~l~~ely 196 (1972)
.+..++..|.+.+. ++||+++.-+|..|-.++++=|.. .|.-+.|+.. |.+++... ...||+....++.+-.
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 46788888988887 479999999999999999987763 2344678864 88888643 4579999888887776
Q ss_pred HhhCC
Q 000167 197 RWIGK 201 (1972)
Q Consensus 197 ~~lG~ 201 (1972)
...+.
T Consensus 130 ~~F~~ 134 (152)
T 3rru_A 130 QGFPG 134 (152)
T ss_dssp TCCSS
T ss_pred HHhCC
Confidence 65553
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=63.17 E-value=8.5 Score=39.92 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHh
Q 000167 297 TKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1972)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl 375 (1972)
.+|--=--.+++|..++... + ..+.+|+..|.++|++.+..++..|+++|.+|+..=...|...++.-... ++.+
T Consensus 23 d~~~~pgylm~EIA~~T~~s---~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~-Ik~l 98 (140)
T 1vdy_A 23 EDKVAPVYKLEEICDLLRSS---HVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVA-VRNL 98 (140)
T ss_dssp CSSCCCHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHH-HHTT
T ss_pred CCCCCcHHHHHHHHHHHHhc---chhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHH-HHHH
Confidence 33333334456666665211 1 12478999999999999999999999999999976566676655544432 3332
Q ss_pred c------------cCcHHHHHHHHHHHHHHHHh
Q 000167 376 K------------EKKPTVAESLTQTLQAMHKA 396 (1972)
Q Consensus 376 k------------dkk~~V~~aa~~aL~al~~~ 396 (1972)
. +....||+.|.+++..|+..
T Consensus 99 ~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 99 FHYKGHPDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp TTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCCCcccccchhHHHHHHHHHHHHHHhCc
Confidence 2 23478999999999998764
No 137
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=63.01 E-value=7.4 Score=40.34 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=69.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHH
Q 000167 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (1972)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp 939 (1972)
+..+|.+|-.=--.+++|.++.... ....+.+++..|.+||++.+.+++..||++|..|+..-...|...++.=..
T Consensus 18 ~ATs~d~~~~pgylm~EIA~~T~~s----~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~ 93 (140)
T 1vdy_A 18 AVTSDEDKVAPVYKLEEICDLLRSS----HVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV 93 (140)
T ss_dssp HTTCSCSSCCCHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH
T ss_pred HHhcCCCCCCcHHHHHHHHHHHHhc----chhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 4456666766666677777776531 111247899999999999999999999999999986555556655544333
Q ss_pred HHHHHhC------C------CcHHHHHHHHHHHHHHHH
Q 000167 940 DILKCLG------D------NKKHMRECTLTVLDAWLA 965 (1972)
Q Consensus 940 ~ll~~L~------D------~k~~Vr~Aa~~aL~~i~~ 965 (1972)
+++.|. | ....||+.|.+++..+..
T Consensus 94 -~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 94 -AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp -HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 344332 2 225799999888877754
No 138
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=59.69 E-value=62 Score=40.18 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=99.4
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh
Q 000167 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1972)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l 401 (1972)
+|..++...+. +.+.-..|++.|..+ -+.|-.....-+-++++.|.|....||..+...|-.+++. ..+
T Consensus 30 ~y~~Il~~~kg-----~~k~K~LaaQ~I~kf----fk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i 98 (507)
T 3u0r_A 30 AYQVILDGVKG-----GTKEKRLAAQFIPKF----FKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL 98 (507)
T ss_dssp HHHHHHHGGGS-----CHHHHHHHHHHHHHH----GGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH
T ss_pred HHHHHHHhcCC-----CHHHHHHHHHHHHHH----HhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh
Confidence 46555553222 355666666666554 4577888999999999999999999998777777766654 458
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCch
Q 000167 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1972)
Q Consensus 402 ~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~ 479 (1972)
..|.+.|...|+...+.-...+-+-|..++...++..+...+..+.. ++..||+.+.+-+..-..-++..
T Consensus 99 ~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~--------~~e~~Rer~lkFi~~kl~~l~~~ 168 (507)
T 3u0r_A 99 PRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ--------GEDIVRERAIKFLSTKLKTLPDE 168 (507)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHGGGSCTT
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc--------cchHHHHHHHHHHHHHHhhcchh
Confidence 88899999999988888777777777777777666666444444333 47899988777776555555543
No 139
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=55.86 E-value=1.1e+02 Score=33.61 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHh
Q 000167 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1972)
Q Consensus 300 keR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl 375 (1972)
..|.+|++.|+. .|.+.+ -..-++.-+...+. =.|..+...-++.+..|...=.=.+++|+.+++|+++..+
T Consensus 23 ~~r~~aL~sL~~---D~gL~~-LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCl 96 (196)
T 4atg_A 23 DMKDIAIECLEK---ESGLQQ-LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCV 96 (196)
T ss_dssp TTHHHHHHHHHH---CSSCTT-THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCChhh-hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 458888887765 333332 12223333333332 1143333333444444444333347899999999999875
No 140
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=52.70 E-value=79 Score=32.12 Aligned_cols=103 Identities=8% Similarity=0.032 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---HHH
Q 000167 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---AVL 440 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~---~l~ 440 (1972)
.+.-+-..|..+..++..+.....=|+. | ...-+.|++.+...++.-.+.-|...+=.+..++.++... .+.
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~----h-~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~ 80 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIE----N-KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR 80 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHH----T-GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHH----h-HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH
Confidence 3445666777777777766655544443 3 3345678888888888777888888887777777766432 233
Q ss_pred HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 000167 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 441 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 473 (1972)
+.+..++|.+...+. ++++|..-.+++...-
T Consensus 81 ~~f~~~l~~~~~~~~--~~~~~~kl~~ll~iW~ 111 (132)
T 4flb_A 81 ESFADVLPEAAALVK--DPSVSKSVERIFKIWE 111 (132)
T ss_dssp HHHHTTHHHHHHTTC--STTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhc
Confidence 333444444444443 4567776666665443
No 141
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=47.91 E-value=76 Score=37.62 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=88.2
Q ss_pred chhhhhccCChHHHHHHHHHHHHHh-cCCCC----CCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhchh
Q 000167 289 GFWEGVKATKWSERKDAVAELTKLA-STKRI----APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFS 361 (1972)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki----~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~ 361 (1972)
.|++-+...++..=-+|...++.++ .++.+ ...+|..++..+.+++...|....+.++++|+.|--. --.-+.
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~ 247 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 247 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence 4666678888888889999998876 44333 2357999999999999999999999999999998642 111123
Q ss_pred hhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000167 362 GSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1972)
Q Consensus 362 ~~~--~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l 408 (1972)
.|+ ..-+..++..++|+.++|+-.|....+-++.+ ......|...|
T Consensus 248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN-P~K~~~I~~IL 295 (341)
T 1upk_A 248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN-PNKTQPILDIL 295 (341)
T ss_dssp HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC-SSCCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC-CCCChHHHHHH
Confidence 453 35677888889999999998888888888776 33444555444
No 142
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=47.56 E-value=1.3e+02 Score=35.45 Aligned_cols=157 Identities=14% Similarity=0.191 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHH-HHhccc--CHHHH--HHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 000167 300 SERKDAVAELTKLAS-TKRIAPGDFTEVCRTLK-KLITDV--NIAVA--VEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1972)
Q Consensus 300 keR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~-k~l~D~--N~~V~--~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (1972)
..|+|-|+-+...++ .+... .-...+++.|. .++.|= |+... .+.+.++..+.+.++..+.+++..++..+++
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe 122 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQ-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 122 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHH-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356777777777653 22100 01234444443 344422 22222 4558899999999999999999888888877
Q ss_pred Hh----c---cCcHHHHHHHHHHHHHHHHhcCCC---------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-
Q 000167 374 KL----K---EKKPTVAESLTQTLQAMHKAGCLN---------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK- 436 (1972)
Q Consensus 374 kl----k---dkk~~V~~aa~~aL~al~~~~~~~---------l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~- 436 (1972)
.. + +.-|..|.+-..-|.++..+ |.. +..+++.|.=|.+|-++.+-...+..+..++.+..+
T Consensus 123 ~TL~MI~~df~eyPehR~~Ff~LL~ai~~~-cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~ 201 (321)
T 1w9c_A 123 CTLNMINKDFEEYPEHRTNFFLLLQAVNSH-CFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE 201 (321)
T ss_dssp HHHHHHSSTTTCSHHHHHHHHHHHHHHHHH-CTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 63 2 46789999999999999988 544 346778888889999999999999888888876531
Q ss_pred -h----HHHHhhhhHHHHHHHHhcCCC
Q 000167 437 -A----AVLKVHKDYVPICMECLNDGT 458 (1972)
Q Consensus 437 -~----~l~~~l~~l~p~l~k~l~Ds~ 458 (1972)
. ....+.-.++.-+...+-|++
T Consensus 202 ~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 202 EAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 1 111233444444555555554
No 143
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=46.36 E-value=1.1e+02 Score=31.77 Aligned_cols=92 Identities=4% Similarity=0.039 Sum_probs=64.1
Q ss_pred cCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcC
Q 000167 377 EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456 (1972)
Q Consensus 377 dkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~D 456 (1972)
.+++.+.....-|+. | .-....|++.+...+..-+|.-|...+=.+..++.+++.....-.-+.+.+.+......
T Consensus 22 nSk~~I~~LT~~a~~----~-~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~ 96 (144)
T 1sz9_A 22 NSRPIITTLTKLAEE----N-ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLL 96 (144)
T ss_dssp CCHHHHHHHHHHHHH----T-GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHH----H-HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHh
Confidence 566666544333333 2 23456788888888887889999999999999998877543333345667777777777
Q ss_pred CChHHHHHHHHHHHHHH
Q 000167 457 GTPEVRDAAFSVLAAIA 473 (1972)
Q Consensus 457 s~~~VR~aA~~~l~~l~ 473 (1972)
.++.+|..-.+++.+..
T Consensus 97 ~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 97 VDNTTRTKLINMFKLWL 113 (144)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 78899988888776555
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=45.46 E-value=3.7e+02 Score=31.89 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=81.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHc--cccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhh
Q 000167 857 TLVKSLESPDWKVRLESIEAVNKILEEA--NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1972)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a--~~~I~~~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~ 934 (1972)
.|++...+.+...-.-+|..+.+++..- -..+.. . .+++.-|...++.....|++.|+.+|..++..-..++.-..
T Consensus 164 ~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs-~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~ 241 (339)
T 3dad_A 164 CLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA-H-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFI 241 (339)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH-C-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC-C-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHH
Confidence 3555556667777778888888887520 001111 1 55666676777777889999999999998876543332221
Q ss_pred hh-----------HHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC
Q 000167 935 KG-----------VLSDILKCLG---DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 983 (1972)
Q Consensus 935 ~~-----------llp~ll~~L~---D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~ 983 (1972)
+. .+..++..|. .....+...|..-++++...++-..-.-.+.+.|...
T Consensus 242 ~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~ 304 (339)
T 3dad_A 242 RAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQ 304 (339)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHc
Confidence 11 1456777776 5677888889999999888877444345667777643
No 145
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=40.98 E-value=96 Score=32.23 Aligned_cols=113 Identities=11% Similarity=0.083 Sum_probs=66.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh------HHHHh-
Q 000167 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA------AVLKV- 442 (1972)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~------~l~~~- 442 (1972)
..|+-|.|.++.+.......|..++....-.-..|+..+..-+..-.|.-|...|=.+..++.++... .+.+.
T Consensus 9 ~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F 88 (145)
T 3d9j_A 9 SELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRF 88 (145)
T ss_dssp HHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHH
Confidence 44566767664455555566666654412234567777777777667888888887777777766431 22222
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHHH--HHhCchhHHH
Q 000167 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLER 483 (1972)
Q Consensus 443 l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~--~~~ge~~~~~ 483 (1972)
.+.+.+.+..+. ...+++|..-.+.+.+.- .+|+.+.+.+
T Consensus 89 ~~~L~~~f~~~~-~~~~~~r~kl~rLl~iW~~r~vF~~~~l~~ 130 (145)
T 3d9j_A 89 SNNIISTFQNLY-RCPGDDKSKIVRVLNLWQKNNVFKSEIIQP 130 (145)
T ss_dssp HHHHHHHHHHHT-SSCGGGHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 233333333333 455899988888887665 3555544433
No 146
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=38.80 E-value=3.6e+02 Score=31.82 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=74.9
Q ss_pred hhhHHHHHHH----HhccCcHHHHH-HHHHHHHHHHHh-c---CCChHhHHHHHHHH-h---h---cCChHHHHHHHHHH
Q 000167 364 SRFLLPVLLE----KLKEKKPTVAE-SLTQTLQAMHKA-G---CLNLVDVVEDVKTS-V---K---NKVPLVRSLTLNWV 427 (1972)
Q Consensus 364 ~~~llp~LL~----klkdkk~~V~~-aa~~aL~al~~~-~---~~~l~~il~~l~~~-l---~---~Knp~vR~~~l~~L 427 (1972)
...++|+|++ =.....+..|+ .+..++.+++.. + ...++.|++.+.++ + + +..|.-|.+-..+|
T Consensus 67 ~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL 146 (321)
T 1w9c_A 67 AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLL 146 (321)
T ss_dssp HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 3444555544 34444444443 233344444443 1 12234455554432 2 1 46799999999999
Q ss_pred HHHHHhcChhHHH---HhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000167 428 TFCIETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 428 ~~~l~~~~~~~l~---~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
..+..+|-...+. ...+.++..++=+..++.++|-+.|..++-.+.+-+.
T Consensus 147 ~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 147 QAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 9999888665443 4568899999999999999999999999988887774
No 147
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=36.60 E-value=6e+02 Score=30.07 Aligned_cols=131 Identities=10% Similarity=0.084 Sum_probs=82.4
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHh-----cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh--HHHHhhh
Q 000167 372 LEKLKEKKPTVAESLTQTLQAMHKA-----GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA--AVLKVHK 444 (1972)
Q Consensus 372 L~klkdkk~~V~~aa~~aL~al~~~-----~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~ 444 (1972)
+.-..+...++..-+-.|+..++.+ +.++-..++..|..-+.++.+.|=+.++..|..++...... .+.+.++
T Consensus 166 i~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~ 245 (339)
T 3dad_A 166 IRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVN 245 (339)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHH
Confidence 3333444666666666677766655 11111345666777777888899889999998888765321 1111111
Q ss_pred --------hHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHhCchh-HHHhHhhccHHHHH-HHHHHHhc
Q 000167 445 --------DYVPICMECLN---DGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRN-KLSEMIAG 502 (1972)
Q Consensus 445 --------~l~p~l~k~l~---Ds~~~VR~aA~~~l~~l~~~~ge~~-~~~~l~~Ld~~~~k-kI~e~~~~ 502 (1972)
.....+++.|. .++.++.-.|...+-.+....+.+. +..+++.|...-.. .|...+++
T Consensus 246 ~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 246 SVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 12346777786 7899999999999998888877544 66677666554333 34444544
No 148
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=33.21 E-value=2.3e+02 Score=34.44 Aligned_cols=185 Identities=14% Similarity=0.132 Sum_probs=111.8
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh
Q 000167 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT-----EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~-----~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (1972)
+.+.+.+.+=.||.-.-.-|..+-. ++. .+. .+-..+...+- +.+.+-+.+.+.+++.+.+|....+...
T Consensus 179 Ll~lfdSeDpRERd~LktiLhrIY~--Kf~--~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKee 254 (392)
T 2jak_A 179 LLELFDSEDPRERDFLKTTLHRIYG--KFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 254 (392)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHH--HCG--GGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 3444578899998765555555421 000 111 12222333333 3444567788999999999876433322
Q ss_pred hhh-HHHHHHHHhccCcHHH-HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000167 364 SRF-LLPVLLEKLKEKKPTV-AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (1972)
Q Consensus 364 ~~~-llp~LL~klkdkk~~V-~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (1972)
... +...|+-..+-+.-.+ -.....|+..++.+.+.-...++..|+..+---|++=..--++-+..+++..++..+.+
T Consensus 255 hk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~ 334 (392)
T 2jak_A 255 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 334 (392)
T ss_dssp HHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 222 3444454555544332 35677888888876222223455555544433443333455788889999999999989
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhH
Q 000167 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485 (1972)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l 485 (1972)
+...+...+.+|++..+-.|-+.|. ..+.++.+..++
T Consensus 335 i~~~lF~~la~ci~S~hfqVAErAL-------~~wnNe~i~~li 371 (392)
T 2jak_A 335 IMEPLFRQLAKCVSSPHFQVAERAL-------YYWNNEYIMSLI 371 (392)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHH-------GGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHH-------HHhCcHHHHHHH
Confidence 9999999999999999999966654 455555444333
No 149
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=28.48 E-value=3e+02 Score=38.16 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHHHHHcc--ccCCC-CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHcChhhHhhhhhHHHHHH
Q 000167 866 DWKVRLESIEAVNKILEEAN--KRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1972)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~--~~I~~-~~~~eL~~~L~~~L~DsN~~V~~~Al~~l~~La~alg~~~~~~~~~llp~ll 942 (1972)
++..|..++-.+..++.... ....+ .....+...|...+...+..-...+|++||.+.. . ..++.+.
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p------~~l~~l~ 477 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----P------NSIKKIQ 477 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----G------GGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----h------hHHHHHH
Confidence 56778889999988887421 11111 1134455555555544455556667777776532 1 2334444
Q ss_pred HHhC-------CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000167 943 KCLG-------DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (1972)
Q Consensus 943 ~~L~-------D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (1972)
..+. +....||.+|+.||..+... -...+-+.+...+.+...++++|..++..|.+. .|. ...+.
T Consensus 478 ~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~----~~~l~ 549 (1056)
T 1lsh_A 478 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLNVAIKSELRIRSCIVFFES---KPS----VALVS 549 (1056)
T ss_dssp TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCC----HHHHH
T ss_pred HhhcCccccccccchHHHHHHHHHHHHhhhh-chHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---CcC----HHHHH
Confidence 4332 22346889999999888643 224466677888876666899999998887542 121 23444
Q ss_pred HHHhhc-CCCCHHHHHHHHHHHHHHHHHcC
Q 000167 1016 PASIAM-TDKSSDVRKAAEACIVEILRAGG 1044 (1972)
Q Consensus 1016 pl~~~L-~D~~~dVR~aA~~~l~~l~~~~G 1044 (1972)
-+...+ .|.+..|+......|..+...-.
T Consensus 550 ~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 550 MVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 455544 67999999888877766665433
No 150
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=28.32 E-value=8.8e+02 Score=29.44 Aligned_cols=187 Identities=14% Similarity=0.130 Sum_probs=113.4
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHH-----HHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchh-h
Q 000167 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTE-----VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS-G 362 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~-----l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~-~ 362 (1972)
+.+.+.+.+=.||.-.-..|..+-. ++. .+.. +-..+..-+- ..+.+-+.+-+.+++.+.+|+..... -
T Consensus 134 Ll~lfdSeDprER~~LktiLhrIY~--kf~--~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 134 LLELFDSEDPRERDFLKTTLHRIYG--KFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHH--HCH--HHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHH--hhh--hhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Confidence 3445688999998765555555421 000 0111 1112222222 33334566788999999998754443 2
Q ss_pred hhhhHHHHHHHHhccCcHHH-HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000167 363 SSRFLLPVLLEKLKEKKPTV-AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (1972)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V-~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (1972)
+..-+...|+-..+-+.-.+ -..+..|+..++.+.+.-...++..|+...-.-|++=-.--++-+..+++..++..+.+
T Consensus 210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~ 289 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 289 (403)
T ss_dssp HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33334455555555554433 36778888888876322233455555544444555444455777888888888888888
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHhh
Q 000167 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1972)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~~ 487 (1972)
+...+...+.+|+...+-.|-+.|. ..+.++.+..++.+
T Consensus 290 i~~~lf~~la~ci~S~hfqVAErAL-------~~wnNe~i~~li~~ 328 (403)
T 3fga_B 290 IMEPLFRQLAKCVSSPHFQVAERAL-------YYWNNEYIMSLISD 328 (403)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHH-------GGGGCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-------HHhccHHHHHHHHH
Confidence 9999999999999999999966654 34555545555544
No 151
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=27.65 E-value=1.6e+02 Score=29.79 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000167 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1972)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~ 434 (1972)
-+..+-..|..|..++..+.....=|+. | ....+.|++.+...++.-.+.-|...+=.+..++.++
T Consensus 5 ~~~~l~~~L~~L~~s~~sI~~~s~w~l~----~-~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 5 SESALEKKLSELSNSQQSVQTLSLWLIH----H-RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNS 70 (135)
T ss_dssp CHHHHHHHHHHCCSSTTHHHHHHHHHHH----T-GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccccHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 3455667778888888777765544443 3 3445778888888887766777888777777777655
No 152
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=27.11 E-value=1.3e+02 Score=37.39 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHHHHhcChh--HHHHhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000167 415 KVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1972)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 475 (1972)
.+|.+-.-+|.=+..++..+|.. .+.+. ..-..++++|++.|++||..|..|+..+|.+
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~l--g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKT--GGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHH--SHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHc--CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 35777777778888888887743 22221 1345788999999999999999999998854
No 153
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=26.87 E-value=3.6e+02 Score=32.68 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChH------hHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000167 381 TVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1972)
Q Consensus 381 ~V~~aa~~aL~al~~~~~~~l~------~il~~l~~~l~~Knp~vR~~~l~~L~~~l~ 432 (1972)
.+...+..||.+++.+ ..++. ..+..|..++.++++.+|..++..|+.+..
T Consensus 135 ~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~ 191 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI 191 (383)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 4556778889888865 22232 356778888999999999999999986443
No 154
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=26.04 E-value=2e+02 Score=29.71 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=59.1
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHhcCh---hHH
Q 000167 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIETSSK---AAV 439 (1972)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~K--np~vR~~~l~~L~~~l~~~~~---~~l 439 (1972)
+.-+-..|..+.+++..|..+..=++ .+ ....+.+++.+...+... ++.-|...+=.+..++..+.. ..+
T Consensus 5 ~~~l~~kL~~L~~sq~sIq~~s~W~l----~h-~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f 79 (142)
T 2km4_A 5 SEQFTTKLNTLEDSQESISSASKWLL----LQ-YRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQF 79 (142)
T ss_dssp HHHHHHHHHTCCSCHHHHHHHHHHHH----TC-GGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHH----Hh-hhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHH
Confidence 34455667777777766654433333 23 344567888888777765 567777766666667765532 122
Q ss_pred HHhh-hhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000167 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1972)
Q Consensus 440 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1972)
.+.+ +.+.+++..+....++++|....+++...
T Consensus 80 ~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iW 113 (142)
T 2km4_A 80 QDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNIL 113 (142)
T ss_dssp HHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 22222333333445788888877777555
No 155
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=25.24 E-value=4.3e+02 Score=32.61 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=111.5
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhchhhh
Q 000167 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT-----EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 363 (1972)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~-----~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (1972)
+.+.+.+.+=.||.-.-..|..|-. ++. ++. .+-..+...+- ..+.+-+.+.+.+++.+.+|+.-.+...
T Consensus 167 Ll~lfdSeDpRERd~LktiLhrIY~--Kf~--~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 167 LLELFDSEDPRERDFLKTTLHRIYG--KFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHH--SCT--TTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 3344588999998765555555532 111 121 11222222232 3334456778888988888875333322
Q ss_pred -hhhHHHHHHHHhccCcHHH-HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000167 364 -SRFLLPVLLEKLKEKKPTV-AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 441 (1972)
Q Consensus 364 -~~~llp~LL~klkdkk~~V-~~aa~~aL~al~~~~~~~l~~il~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 441 (1972)
..-+...|+-..+-+.-.+ -.....|+..++.+.+.-...++..|+...---|++=-.--++.+..+++..++..+.+
T Consensus 243 hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~ 322 (449)
T 2npp_B 243 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 322 (449)
T ss_dssp HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 2233444555555554333 45677888888876222223455555544444454433455777888888888888989
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCchhHHHhHh
Q 000167 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1972)
Q Consensus 442 ~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ge~~~~~~l~ 486 (1972)
+...+...+.+|++..+-.|-+.|. ..+.++.+..++.
T Consensus 323 i~~~lF~~la~ci~S~hfqVAErAL-------~~w~N~~i~~li~ 360 (449)
T 2npp_B 323 IMEPLFRQLAKCVSSPHFQVAERAL-------YYWNNEYIMSLIS 360 (449)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHH-------GGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-------HHHCCHHHHHHHH
Confidence 9999999999999999999966654 4456554444443
No 156
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=22.64 E-value=1.6e+03 Score=30.69 Aligned_cols=121 Identities=11% Similarity=0.091 Sum_probs=73.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-------chHHHHHHHHHHHHHHHHHcChhh
Q 000167 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-------SNKNLVMATLITLGAVASAMGPAV 930 (1972)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~ll~~a~~~I~~~~~~eL~~~L~~~L~D-------sN~~V~~~Al~~l~~La~alg~~~ 930 (1972)
+.+.++..+..++.-+|..|+.+- ..+.+..|.+.+.. ....|+..|+..+..++
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN~g-----------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~------- 506 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGNAG-----------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA------- 506 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-----------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG-------
T ss_pred HHHHHhcCChHHHHHHHHHhhccC-----------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh-------
Confidence 344445556666666666666542 12345566665531 12346666766655554
Q ss_pred HhhhhhHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000167 931 EKSSKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1972)
Q Consensus 931 ~~~~~~llp~ll~~L~--D~k~~Vr~Aa~~aL~~i~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1972)
..+-+.+-+.++..+. .....||-+|. ..++...+-..++..|...+.... |.+++..+...|...
T Consensus 507 ~~~p~~v~~il~~i~~n~~e~~EvRiaA~---~~Lm~t~P~~~~l~~ia~~l~~E~-~~QV~sfv~S~l~sl 574 (1056)
T 1lsh_A 507 KRDPRKVQEIVLPIFLNVAIKSELRIRSC---IVFFESKPSVALVSMVAVRLRREP-NLQVASFVYSQMRSL 574 (1056)
T ss_dssp GTCHHHHHHHHHHHHHCTTSCHHHHHHHH---HHHHHTCCCHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred hhchHHHHHHHHHHhcCCCCChHHHHHHH---HHHHHHCcCHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHH
Confidence 2233445556666664 45567998864 444666666778888888888654 788888888877653
No 157
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.16 E-value=2.3e+02 Score=30.10 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhh---cC
Q 000167 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVK---NK 415 (1972)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il---~~l~~~l~---~K 415 (1972)
..+|+.|+..|.. ..|...++..++...=|+|..-|+.+...|..++.. ..+.+++. ..++..+. -.
T Consensus 26 ~~Ea~~~l~eL~~------p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~-~ls~~~i~~Gf~~lle~ldDl~iD 98 (165)
T 2rg8_A 26 TNEVAEMLRDLNL------GEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGT-VMSTTDVEKSFDKLLKDLPELALD 98 (165)
T ss_dssp HHHHHHHHHHHTC------SGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTT-TBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhChhhccc
Confidence 4577788877641 235666777777777789999999999999988653 56666664 44444444 36
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 000167 416 VPLVRSLTLNWVTFCIET 433 (1972)
Q Consensus 416 np~vR~~~l~~L~~~l~~ 433 (1972)
.|........|+++++..
T Consensus 99 iP~a~~~la~fiarav~d 116 (165)
T 2rg8_A 99 TPRAPQLVGQFIARAVGD 116 (165)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHc
Confidence 799999999999998864
No 158
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.83 E-value=3.5e+02 Score=27.28 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhh---c
Q 000167 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVK---N 414 (1972)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~~~~~l~~il---~~l~~~l~---~ 414 (1972)
..+|+.|+..|.. + .|...++...+...=|++ ...++.+..-|..++..+..+.+++. ..++..+. -
T Consensus 23 ~~Ea~~cl~eL~~---p---~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~l 96 (129)
T 2nsz_A 23 ISEAEHCLKELEV---P---HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINL 96 (129)
T ss_dssp HHHHHHHHHHHTC---G---GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---C---ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhhc
Confidence 4688899988752 1 334455555555555665 47788898999888865456666664 33444444 3
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 000167 415 KVPLVRSLTLNWVTFCIET 433 (1972)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~ 433 (1972)
..|........|+.+++..
T Consensus 97 DiP~a~~~l~~~v~~ai~~ 115 (129)
T 2nsz_A 97 DVPHSYSVLERFVEECFQA 115 (129)
T ss_dssp HSTTHHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHHC
Confidence 6789999999999988864
No 159
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.57 E-value=3.3e+02 Score=28.34 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhh---c
Q 000167 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVK---N 414 (1972)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~~~~~l~~il---~~l~~~l~---~ 414 (1972)
..+|+.|+..|.. + .|...++..++...=|++ ...++.+...|..++..+..+.+++. ..++..+. -
T Consensus 25 ~~EA~~cl~EL~~---p---~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~l 98 (152)
T 2ion_A 25 ISEAEHCLKELEV---P---HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINL 98 (152)
T ss_dssp HHHHHHHHHHHTC---G---GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---C---cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhcc
Confidence 4788899988742 2 334455555555555554 67788998999888865456666664 33444443 3
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 000167 415 KVPLVRSLTLNWVTFCIET 433 (1972)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~ 433 (1972)
-.|........|+.+++..
T Consensus 99 DiP~A~~~la~~v~~ai~~ 117 (152)
T 2ion_A 99 DVPHSYSVLERFVEECFQA 117 (152)
T ss_dssp HSTTHHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHHC
Confidence 6788888888888888764
No 160
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=21.33 E-value=9.4e+02 Score=27.36 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=27.8
Q ss_pred hHHHHhhhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHhC
Q 000167 437 AAVLKVHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKSVG 477 (1972)
Q Consensus 437 ~~l~~~l~~l~p~l~k~l~-Ds~~~VR~aA~~~l~~l~~~~g 477 (1972)
..+.-.-..++..|...+. +-+++|.++=.++++.+...+.
T Consensus 238 ~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~l~ 279 (283)
T 1c7c_A 238 VNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLT 279 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3343333555666666664 6788999999999988877654
No 161
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=20.35 E-value=2.6e+02 Score=34.79 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=54.5
Q ss_pred cCCCCChhhHHHHHHhccc----------cchHHHHHHHHHHHHHHHHHcChhhHhhhhh--HHHHHHHHhCCCcHHHHH
Q 000167 887 RIQPAGTGELFGGLRGRLY----------DSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRE 954 (1972)
Q Consensus 887 ~I~~~~~~eL~~~L~~~L~----------DsN~~V~~~Al~~l~~La~alg~~~~~~~~~--llp~ll~~L~D~k~~Vr~ 954 (1972)
++..+. .+++..|.+.|. ..++.+..-||.-||+++.....+ ...+.. .=..+++.+.+.++.||-
T Consensus 388 kf~e~~-~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~d~~Vr~ 465 (480)
T 1ho8_A 388 EFKKDN-YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDSRVKY 465 (480)
T ss_dssp GGSSGG-GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSHHHHH
T ss_pred HHHhcc-hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCHHHHH
Confidence 444444 566666666664 246778899999999999876433 112222 234667788899999999
Q ss_pred HHHHHHHHHHHh
Q 000167 955 CTLTVLDAWLAA 966 (1972)
Q Consensus 955 Aa~~aL~~i~~~ 966 (1972)
.|..|+..|+.+
T Consensus 466 ~AL~avQklm~~ 477 (480)
T 1ho8_A 466 EALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888754
Done!