Your job contains 1 sequence.
>000169
MQSGGGPSRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRK
PDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNRSQGV
EHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRMGNLKMQELIS
MQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRP
MQAAQHQQSIQNAAGNQLAMAAQLQAWALERNIDLSQPANASLIAQLIPIMQSRIVANHK
ANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAKARPTVSPSPLGST
TSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPV
KNSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQMPQQRLGFTKHQLH
VLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAE
DQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGK
EEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQ
PKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKK
RSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMP
DRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNR
GVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSS
FLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIR
NRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKL
NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIY
YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV
LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPT
HNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY
DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK
DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL
EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR
IGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQ
YKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSED
EVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDS
GEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGA
VGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSPVS
PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQ
PKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHG
ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDG
KIANASGSSNFSAKMSDVIQRRVCTVSLLHYGF
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000169
(1953 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2062999 - symbol:BRM "AT2G46020" species:3702 ... 5351 0. 2
UNIPROTKB|D4AA07 - symbol:Smarca4 "Transcription activato... 1052 1.0e-132 6
POMBASE|SPAC1250.01 - symbol:snf21 "ATP-dependent DNA hel... 1047 1.3e-129 5
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 1065 6.9e-128 5
UNIPROTKB|P51532 - symbol:SMARCA4 "Transcription activato... 1052 1.5e-121 5
UNIPROTKB|Q9HBD4 - symbol:SMARCA4 "SMARCA4 isoform 2" spe... 1052 2.6e-120 5
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 731 3.4e-118 2
UNIPROTKB|K7GT64 - symbol:LOC100622433 "Uncharacterized p... 1052 4.4e-118 3
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 1078 2.8e-117 4
POMBASE|SPCC1620.14c - symbol:snf22 "ATP-dependent DNA he... 1037 2.8e-117 5
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 1070 3.5e-117 9
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 1071 8.1e-117 3
SGD|S000005816 - symbol:SNF2 "Catalytic subunit of the SW... 1049 4.8e-116 6
TAIR|locus:2062840 - symbol:SYD "SPLAYED" species:3702 "A... 1183 3.0e-115 3
FB|FBgn0000212 - symbol:brm "brahma" species:7227 "Drosop... 1100 5.4e-115 4
MGI|MGI:99603 - symbol:Smarca2 "SWI/SNF related, matrix a... 1065 6.6e-115 5
UNIPROTKB|E1C2F7 - symbol:E1C2F7 "Uncharacterized protein... 1075 1.4e-114 4
UNIPROTKB|D4A4J2 - symbol:Smarca2 "Protein Smarca2" speci... 1065 1.9e-114 5
UNIPROTKB|A7Z019 - symbol:SMARCA4 "Transcription activato... 1057 4.0e-114 4
UNIPROTKB|F1M6Y4 - symbol:Smarca4 "Transcription activato... 1062 4.1e-114 4
UNIPROTKB|A5PKK5 - symbol:SMARCA2 "SMARCA2 protein" speci... 1065 8.3e-114 4
UNIPROTKB|E2RKP4 - symbol:SMARCA2 "Uncharacterized protei... 1065 8.9e-114 4
RGD|621728 - symbol:Smarca4 "SWI/SNF related, matrix asso... 1057 1.6e-113 4
MGI|MGI:88192 - symbol:Smarca4 "SWI/SNF related, matrix a... 1057 1.6e-113 4
UNIPROTKB|J9P5P2 - symbol:SMARCA2 "Uncharacterized protei... 1065 1.6e-113 4
UNIPROTKB|G3V790 - symbol:Smarca4 "SWI/SNF related, matri... 1057 1.6e-113 4
ZFIN|ZDB-GENE-030605-1 - symbol:smarca4 "SWI/SNF related,... 1061 2.2e-113 4
UNIPROTKB|E9PTG1 - symbol:Smarca2 "Protein Smarca2" speci... 1065 2.6e-113 6
ZFIN|ZDB-GENE-030131-5964 - symbol:smarca2 "SWI/SNF relat... 1070 5.7e-113 3
UNIPROTKB|P51531 - symbol:SMARCA2 "Probable global transc... 1065 9.4e-113 3
UNIPROTKB|E2RJ89 - symbol:SMARCA4 "Uncharacterized protei... 1057 1.2e-112 3
RGD|1302988 - symbol:Smarca2 "SWI/SNF related, matrix ass... 1061 2.1e-112 5
UNIPROTKB|F1MJ46 - symbol:SMARCA4 "Transcription activato... 1040 1.1e-110 3
UNIPROTKB|F1SJG5 - symbol:SMARCA2 "Uncharacterized protei... 1065 2.3e-109 4
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 1052 8.8e-108 2
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 1066 2.3e-107 3
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 1066 2.3e-107 3
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 1044 4.2e-105 3
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 1003 1.2e-102 2
DICTYBASE|DDB_G0285205 - symbol:snf2a "SNF2-related prote... 955 5.2e-100 5
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 554 1.5e-91 3
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 904 2.0e-91 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 904 2.0e-91 2
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 538 6.4e-90 3
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 530 1.5e-89 3
UNIPROTKB|F6TQG2 - symbol:SMARCA1 "Probable global transc... 891 9.5e-89 2
UNIPROTKB|P28370 - symbol:SMARCA1 "Probable global transc... 891 9.5e-89 2
UNIPROTKB|F1RTI9 - symbol:SMARCA1 "Uncharacterized protei... 888 2.0e-88 2
UNIPROTKB|K7GLQ2 - symbol:SMARCA1 "Uncharacterized protei... 887 2.6e-88 2
UNIPROTKB|K7GMM0 - symbol:SMARCA1 "Uncharacterized protei... 887 2.6e-88 2
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 509 8.1e-88 6
RGD|1561046 - symbol:Smarca1 "SWI/SNF related, matrix ass... 880 6.8e-87 1
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 503 4.9e-83 3
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 503 4.9e-83 3
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 503 3.6e-81 3
GENEDB_PFALCIPARUM|PFB0730w - symbol:PFB0730w "DNA helica... 763 3.7e-81 4
UNIPROTKB|O96239 - symbol:PFB0730w "DEAD/DEAH box helicas... 763 3.7e-81 4
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 508 8.1e-81 3
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 497 1.5e-80 4
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 498 1.8e-80 3
FB|FBgn0250786 - symbol:Chd1 "Chromodomain-helicase-DNA-b... 467 2.6e-80 5
MGI|MGI:106209 - symbol:Hells "helicase, lymphoid specifi... 491 8.5e-80 3
UNIPROTKB|D4AD08 - symbol:Chd2 "Chromodomain helicase DNA... 457 9.3e-80 4
UNIPROTKB|B6ZLK2 - symbol:CHD1 "Chromodomain-helicase-DNA... 467 2.3e-79 5
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 456 2.3e-79 3
UNIPROTKB|F1P5V4 - symbol:HELLS "Uncharacterized protein"... 514 2.6e-79 3
UNIPROTKB|O14647 - symbol:CHD2 "Chromodomain-helicase-DNA... 456 3.0e-79 4
UNIPROTKB|E1C1A9 - symbol:CHD2 "Uncharacterized protein" ... 455 5.7e-79 4
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 804 9.1e-79 1
UNIPROTKB|J9PA90 - symbol:CHD2 "Uncharacterized protein" ... 456 1.1e-78 4
UNIPROTKB|F1MGF2 - symbol:CHD1 "Uncharacterized protein" ... 472 1.3e-78 4
RGD|1306794 - symbol:Chd1 "chromodomain helicase DNA bind... 457 1.4e-78 4
UNIPROTKB|G3MXX3 - symbol:CHD2 "Uncharacterized protein" ... 456 2.3e-78 3
UNIPROTKB|J9P6Y8 - symbol:CHD1 "Uncharacterized protein" ... 471 3.2e-78 4
UNIPROTKB|F1SA77 - symbol:CHD2 "Uncharacterized protein" ... 456 3.4e-78 4
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 456 3.7e-78 4
UNIPROTKB|J9NX79 - symbol:CHD2 "Uncharacterized protein" ... 456 4.3e-78 4
UNIPROTKB|E2R5Z7 - symbol:CHD2 "Uncharacterized protein" ... 456 7.0e-78 4
MGI|MGI:88393 - symbol:Chd1 "chromodomain helicase DNA bi... 467 8.1e-78 5
UNIPROTKB|E2QUI5 - symbol:CHD1 "Uncharacterized protein" ... 471 1.6e-77 5
UNIPROTKB|O14646 - symbol:CHD1 "Chromodomain-helicase-DNA... 471 2.8e-77 6
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 546 6.6e-77 3
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 545 8.6e-77 3
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 535 9.0e-77 4
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 553 1.0e-76 4
MGI|MGI:1915392 - symbol:Ino80 "INO80 homolog (S. cerevis... 547 4.8e-76 4
ASPGD|ASPL0000047400 - symbol:AN2285 species:162425 "Emer... 538 9.6e-76 3
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 545 1.1e-75 4
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 545 1.1e-75 4
UNIPROTKB|I3LIS2 - symbol:CHD1 "Uncharacterized protein" ... 448 1.7e-75 4
UNIPROTKB|F1NYY9 - symbol:INO80 "Uncharacterized protein"... 539 1.8e-75 4
UNIPROTKB|F1RN66 - symbol:CHD1 "Uncharacterized protein" ... 448 7.3e-75 5
UNIPROTKB|I3L6N4 - symbol:CHD1 "Uncharacterized protein" ... 448 7.4e-75 5
SGD|S000003118 - symbol:INO80 "ATPase and nucleosome spac... 522 8.0e-75 3
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 571 8.6e-75 5
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 505 2.0e-74 3
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 539 2.6e-74 4
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 571 8.4e-74 4
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 438 5.1e-73 5
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 571 7.9e-73 5
WARNING: Descriptions of 470 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 5351 (1888.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 1107/1692 (65%), Positives = 1254/1692 (74%)
Query: 207 EQPQQQVSDQKGEPKPPSQQTLG-GQGMAANIIRPMQAAQHQQSIXXXXXXXXXXXXXXX 265
E+ + S Q+ E K QQ +G GQ M N+IRPMQA Q QQ +
Sbjct: 200 ERQTESSSQQRNETKSHPQQQVGTGQLMPGNMIRPMQAPQAQQLVNNMGNNQLAFAQQWQ 259
Query: 266 XXXX-ERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPT 324
R ++ A+ +Q+ I+Q+R+ A KA E N+ + S +P+S Q +S
Sbjct: 260 AMQAWARERNIDLSHPANA-SQMAHILQARMAAQQKAGEGNVASQSPSIPISSQPASSSV 318
Query: 325 IAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDN 384
+ GENSPHAN AKAR +S ST+S ++ FS GR+N
Sbjct: 319 VPGENSPHANSASDISGQSGSAKARHALSTGSFASTSSPRMVNP----AMNPFSGQGREN 374
Query: 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGP-ENSQMQYLRQLNRSSPQ 443
+ R V NG+P +P QTS N TP +DQ K S GP E+ QMQ RQLN +P
Sbjct: 375 PMYPRHLVQPTNGMPSGNPLQTSANETPVLDQNASTKKSLGPAEHLQMQQPRQLNTPTPN 434
Query: 444 SAIPXXXXXXXXXXXXQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQEL 503
P Q G TQ QQR GFTK QLHVLKAQILAFRRLKKGEG+LP EL
Sbjct: 435 LVAPSDTGPLSNSSL-QSGQGTQQAQQRSGFTKQQLHVLKAQILAFRRLKKGEGSLPPEL 493
Query: 504 LRAIVXXXXXXXXXXXXXXXXXXXVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQS 563
L+AI QDR S K EDQ R LE GK++QA +SSN
Sbjct: 494 LQAISPPPLELQTQRQISPAIGKV---QDRSSDKTGEDQARSLEC-GKESQAAASSNGPI 549
Query: 564 LPKEEAYAGDDKAAVSPV-GQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLR 622
KEE GD + A++ Q + KE V KEEQQ V VKSDQ + +
Sbjct: 550 FSKEEDNVGDTEVALTTGHSQLFQNLGKEATSTDVATKEEQQTDVFPVKSDQGADSSTQK 609
Query: 623 TQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTR 682
+ SD AD+GK+VA D Q K P QA + PKD +ARKY+GPLFDFPFFTR
Sbjct: 610 NPR-SDSTADKGKAVAS-----DGSQSKVPPQANSPQPPKDTASARKYYGPLFDFPFFTR 663
Query: 683 KHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIR 742
K DS GS A N++NNLTLAYD+KDL+ EEG E L KKR+++LKKI+G+LA NLERKRIR
Sbjct: 664 KLDSYGS-ATANANNNLTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIR 722
Query: 743 PDLVLRLQIEXXXXXXXXXXXXXXXEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQV 802
PDLVLRLQIE EVD+QQQEIM+MPDR YRKFVRLCERQR+E+ RQV
Sbjct: 723 PDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQEIMSMPDRPYRKFVRLCERQRLEMNRQV 782
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRN 862
+QKA+REKQLK+I QWRKKLLEAHWAIRDARTARNRGVAKYHE++LREFSKRKDD RN
Sbjct: 783 LANQKAVREKQLKTIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDGRN 842
Query: 863 KRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXX 922
KRMEALKNNDVERYREMLLEQQT++PGDAAERYAVLSSFLTQTE+YL+KLG KIT
Sbjct: 843 KRMEALKNNDVERYREMLLEQQTNMPGDAAERYAVLSSFLTQTEDYLHKLGGKITATKNQ 902
Query: 923 XXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA 982
RLQGLSEEEVR+AA CA EEV+IRNRF EMNAP++ SSVNKYY+LA
Sbjct: 903 QEVEEAANAAAVAARLQGLSEEEVRAAATCAREEVVIRNRFTEMNAPKENSSVNKYYTLA 962
Query: 983 HAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1042
HAVNE V+RQPSML+AGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY
Sbjct: 963 HAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1022
Query: 1043 LMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102
LMEFKGNYGPHLIIVPNAVLVNWKSELH WLPSVSCIYYVG KDQRS+LFSQEV A+KFN
Sbjct: 1023 LMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFN 1082
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ
Sbjct: 1083 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1142
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
ND P+VFDNRKAFHDWF+QPFQKEGP HN +DDWLETEKKVI+IHRLHQ
Sbjct: 1143 NDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQ 1202
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
ILEPFMLRRRVEDVEGSLP KVS+VLRCRMSAIQSA+YDWIKATGTLRVDP+DEK R QK
Sbjct: 1203 ILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQK 1262
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR 1342
NPIYQAK+Y+TLNNRCMELRK CNHPLLNYPYF+D SKDFLV+SCGKLWILDRILIKLQR
Sbjct: 1263 NPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQR 1322
Query: 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402
TGHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFN D+DCFIFLL
Sbjct: 1323 TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLL 1382
Query: 1403 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1462
SIRAAGRGLNLQ+ADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+K+SSH
Sbjct: 1383 SIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKLSSH 1442
Query: 1463 QKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1522
QKEDELRSGG+VDLEDD+AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE
Sbjct: 1443 QKEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1502
Query: 1523 ERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYD 1582
ERRMTLETLLHDEERYQETVHDVPSL EVNRMIARSE+EVELFDQMDEEF W EEMT ++
Sbjct: 1503 ERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHE 1562
Query: 1583 QVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKE 1641
QVPKWLRAST+EVNAT+A+LSKKPSKN+L SN+ V G ERKRG PK KK NYKE
Sbjct: 1563 QVPKWLRASTREVNATVADLSKKPSKNMLSSSNLIVQPGGPGGERKRGRPKSKKI-NYKE 1621
Query: 1642 VDDEIGEYSEASSDERNGYPVQXXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVCEGG 1701
++D+I YSE SS+ERN +GA+G +NK + + + PVC G
Sbjct: 1622 IEDDIAGYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQTNKGEFDGENPVC--G 1679
Query: 1702 YDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSALEARPGSLSKRM 1761
YDY S + + N ++A R ++ SPVS QKFGSLSAL+ RPGS+SKR+
Sbjct: 1680 YDYPPGSGSYKKNPPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLSALDTRPGSVSKRL 1739
Query: 1762 PDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPE 1821
D+LEEGEIA SGDSH+D Q+SGSW HDRDEG++EQVLQP IKRKRSIR+RPR T ER +
Sbjct: 1740 LDDLEEGEIAASGDSHIDLQRSGSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAERVD 1799
Query: 1822 ERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT--DTEMKAHGESNSLRHDQSEPSSKSRRN 1879
++ P + P Q+D Y ++LRT D+ +S+S +S P+ K
Sbjct: 1800 G---SEMPAAQ------PLQVDRSYRSKLRTVVDSHSSRQDQSDSSSRLRSVPAKKVAST 1850
Query: 1880 LPSRKIANAPKS 1891
S+ ++PKS
Sbjct: 1851 --SKLHVSSPKS 1860
Score = 797 (285.6 bits), Expect = 6.3e-123, Sum P(2) = 6.3e-123
Identities = 218/561 (38%), Positives = 267/561 (47%)
Query: 59 RKPDGNEAILAYQVGSLPGLMGGGNFAXXXXXXXXXXXXRKFFDFAQQHAISQESQNRSQ 118
R D NE + AYQ G + G+MGGGNFA R FF+ QQ Q+ Q S
Sbjct: 64 RNSDTNENMFAYQPGGVQGMMGGGNFASSPGSMQMPQQSRNFFESPQQQQ-QQQQQGSST 122
Query: 119 GVEHQLLNPVHXXXXXXXXXXXXKSASVLQSQQQAKLGMLGPAS-GKDQDMRMGNLKMQE 177
Q NP+ + A QQQA++GM+G +S GKDQD RMG L MQ+
Sbjct: 123 QEGQQNFNPMQQAYIQFAMQAQHQKA-----QQQARMGMVGSSSVGKDQDARMGMLNMQD 177
Query: 178 LIXXXXXXXXXXXXXXXXXEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANI 237
L +QF RGE+Q E QQ ++ K P+ QQ GQ M N+
Sbjct: 178 L---NPSSQPQASSSKPSGDQFARGERQTESSSQQRNETKSHPQ---QQVGTGQLMPGNM 231
Query: 238 IRPMQAAQHQQSIXXXXXXXXXXXX---XXXXXXXERNIDLSQPANASLIAQLIPIMQSR 294
IRPMQA Q QQ + ERNIDLS PANAS Q+ I+Q+R
Sbjct: 232 IRPMQAPQAQQLVNNMGNNQLAFAQQWQAMQAWARERNIDLSHPANAS---QMAHILQAR 288
Query: 295 IVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSP 354
+ A KA E N+ + S +P+S Q +S + GENSPHAN AKAR +S
Sbjct: 289 MAAQQKAGEGNVASQSPSIPISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALST 348
Query: 355 SPLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGV 414
ST+S ++ FS GR+N + R V NG+P +P QTS N TP +
Sbjct: 349 GSFASTSSPRMVNP----AMNPFSGQGRENPMYPRHLVQPTNGMPSGNPLQTSANETPVL 404
Query: 415 DQPLPVKNSSGP-ENSQMQYLRQLNRSSPQSAIPXXXXXXXXXXXXQGGLATQMPQQRLG 473
DQ K S GP E+ QMQ RQLN +P P Q G TQ QQR G
Sbjct: 405 DQNASTKKSLGPAEHLQMQQPRQLNTPTPNLVAPSDTGPLSNSSL-QSGQGTQQAQQRSG 463
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVXXXXXXXXXXXXXXXXXXXVNNQDR 533
FTK QLHVLKAQILAFRRLKKGEG+LP ELL+AI QDR
Sbjct: 464 FTKQQLHVLKAQILAFRRLKKGEGSLPPELLQAISPPPLELQTQRQISPAIGKV---QDR 520
Query: 534 VSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPA 593
S K EDQ R LE + A SS+ +E+ + A + Q + KE
Sbjct: 521 SSDKTGEDQARSLECGKESQAAASSNGPIFSKEEDNVGDTEVALTTGHSQLFQNLGKEAT 580
Query: 594 PVVVPGKEEQQAPVSSVKSDQ 614
V KEEQQ V VKSDQ
Sbjct: 581 STDVATKEEQQTDVFPVKSDQ 601
Score = 514 (186.0 bits), Expect = 6.3e-123, Sum P(2) = 6.3e-123
Identities = 120/259 (46%), Positives = 163/259 (62%)
Query: 1689 DQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLS 1748
++ E DG GYDY S + + N ++A R ++ SPVS QKFGSLS
Sbjct: 1667 NKGEFDGENPVCGYDYPPGSGSYKKNPPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLS 1726
Query: 1749 ALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 1808
AL+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+SGSW HDRDEG++EQVLQP IKRKRS
Sbjct: 1727 ALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRSGSWAHDRDEGDEEQVLQPTIKRKRS 1786
Query: 1809 IRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHD 1868
IR+RPR T ER + ++ P + P Q+D Y ++LRT + S+S R D
Sbjct: 1787 IRLRPRQTAERVDG---SEMPAAQ------PLQVDRSYRSKLRTVVD------SHSSRQD 1831
Query: 1869 QSEPSSKSRRNLPSRKIANAPKSRASL-KTGRLNCMPGHTEDAADHFKESWDGKIANASG 1927
QS+ SS+ R ++P++K+A+ K S K+GRLN ED A+ +E+WDG +
Sbjct: 1832 QSDSSSRLR-SVPAKKVASTSKLHVSSPKSGRLNATQLTVEDNAEASRETWDG--TSPIS 1888
Query: 1928 SSNFSAKMSDVIQRRVCTV 1946
SSN A+MS +IQ+R C +
Sbjct: 1889 SSNAGARMSHIIQKR-CKI 1906
Score = 42 (19.8 bits), Expect = 6.2e-41, Sum P(3) = 6.2e-41
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 600 KEEQQAPV-----SSVKSDQEVECGLLRTQQQSDFPADRGKSVAP 639
K +QQA + SSV DQ+ G+L Q + + S P
Sbjct: 147 KAQQQARMGMVGSSSVGKDQDARMGMLNMQDLNPSSQPQASSSKP 191
Score = 38 (18.4 bits), Expect = 6.2e-41, Sum P(3) = 6.2e-41
Identities = 25/99 (25%), Positives = 39/99 (39%)
Query: 350 PTVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLN 409
P + P+ ++TS+A S+QQ + Q +Q +A T+ N
Sbjct: 14 PAMGPAGRTASTSSAASPSSSSSSVQQQQQQQQQQQ--QQQQLASRQQQQQHRNSDTNEN 71
Query: 410 M---TPG-VDQPLPVKN-SSGPENSQMQYLRQLNRSSPQ 443
M PG V + N +S P + QM + SPQ
Sbjct: 72 MFAYQPGGVQGMMGGGNFASSPGSMQMPQQSRNFFESPQ 110
Score = 37 (18.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQ 226
++Q +Q QQQ Q+ + QQ
Sbjct: 39 QQQQQQQQQQQQQQQLASRQQQQQ 62
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 1052 (375.4 bits), Expect = 1.0e-132, Sum P(6) = 1.0e-132
Identities = 232/505 (45%), Positives = 308/505 (60%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 527 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 586
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 587 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 645
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 646 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 705
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 706 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 760
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 761 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 820
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 821 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 873
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 874 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 933
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 934 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 993
Query: 1443 QKREVKVIYM---EAVVDKISSHQK 1464
Q+ EV+V+ + +V +KI + K
Sbjct: 994 QQNEVRVLRLCTVNSVEEKILAAAK 1018
Score = 106 (42.4 bits), Expect = 1.0e-132, Sum P(6) = 1.0e-132
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 243 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFREYHRSVTGKLQKLT 300
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 301 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 352
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 353 --LQQTDEYVANL 363
Score = 89 (36.4 bits), Expect = 1.0e-132, Sum P(6) = 1.0e-132
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 1500 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 1543
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 1018 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRH 1060
Score = 76 (31.8 bits), Expect = 1.0e-132, Sum P(6) = 1.0e-132
Identities = 33/130 (25%), Positives = 63/130 (48%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEV 1595
+VP + VN+MIAR E+E +LF +MD EE + R D++P W+ K+
Sbjct: 1094 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD- 1149
Query: 1596 NATIANLSKKPSKNILFGSNIG----VDSGEIETER---KRGPKGKKYPNYKEVDDEIGE 1648
+A + L+ + + +FG VD + TE+ K+ + +E+++E+ +
Sbjct: 1150 DAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKQLKAAIEEGTLEEIEEEVRQ 1209
Query: 1649 YSEASSDERN 1658
+ +R+
Sbjct: 1210 KKSSRKRKRD 1219
Score = 54 (24.1 bits), Expect = 1.0e-132, Sum P(6) = 1.0e-132
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPV 420
PS P A+ P+ PPQT +PG QP P+
Sbjct: 110 PSPAPPAVPPAASPVMPPQTQ---SPGQPAQPAPL 141
Score = 45 (20.9 bits), Expect = 4.6e-08, Sum P(6) = 4.6e-08
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY 1148
D +S+VD ++II + Q + D V LAR L Y
Sbjct: 493 DSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 530
Score = 42 (19.8 bits), Expect = 6.4e-129, Sum P(5) = 6.4e-129
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 390 QPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
QP + PP PP S M P P
Sbjct: 105 QPTGRPSPAPPAVPPAASPVMPPQTQSP 132
Score = 39 (18.8 bits), Expect = 1.0e-132, Sum P(6) = 1.0e-132
Identities = 17/61 (27%), Positives = 19/61 (31%)
Query: 299 HKANESNMGAPS-SPVP--VSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
H NM P S VP + Q P P AN +PT PS
Sbjct: 52 HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 111
Query: 356 P 356
P
Sbjct: 112 P 112
Score = 39 (18.8 bits), Expect = 9.8e-126, Sum P(6) = 9.8e-126
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 341 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 383
Score = 38 (18.4 bits), Expect = 1.2e-125, Sum P(6) = 1.2e-125
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 324 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 381
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 1047 (373.6 bits), Expect = 1.3e-129, Sum P(5) = 1.3e-129
Identities = 231/506 (45%), Positives = 310/506 (61%)
Query: 954 GEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWML 1013
GE + MN P D ++ YY++AH + E V QPS+L G L++YQ+ GLQWM+
Sbjct: 372 GESAYDEDMDRRMN-PEDDRKID-YYNVAHNIREVVTEQPSILVGGKLKEYQLRGLQWMI 429
Query: 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWL 1073
SLYNN LNGILADEMGLGKT+Q ++LI +L+E K GP L+IVP + L NW E +W
Sbjct: 430 SLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWA 489
Query: 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQR 1133
PS+ I Y G R L Q V F VL+TTYE+I+ DR LS++ W Y+IIDE R
Sbjct: 490 PSIVKIVYKGPPQVRKALHPQ-VRHSNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHR 548
Query: 1134 MKDRESVLARDLDRYRCQR-RLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQ 1192
MK+ +S L L Y R RL+LTGTPLQN+ P +F++ K+F +WF+
Sbjct: 549 MKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNT 608
Query: 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRM 1252
PF G D L E+ +++I RLH++L PF+LRR +DVE LP KV V+RC+M
Sbjct: 609 PFANTG---GQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQM 665
Query: 1253 SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312
S +Q +Y +K G L V ED KR K I K L N M+L+K CNHP +
Sbjct: 666 SGLQQKLYYQMKKHGMLYV--EDAKRG--KTGI------KGLQNTVMQLKKICNHPFV-- 713
Query: 1313 PYFSDLSK---------DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1363
F D+ + D L + GK +LDRIL KL R+GHR+L+F MT++++I+E+Y
Sbjct: 714 --FEDVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDY 771
Query: 1364 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 1423
L +RQ Y R+DG+T +DR + FN ++ +FLLS RA G GLNLQ+ADTVII+D
Sbjct: 772 LHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFD 831
Query: 1424 PDPNPKNEEQAVARAHRIGQKREVKV 1449
D NP + QA RAHRIGQ +EV++
Sbjct: 832 SDWNPHQDLQAQDRAHRIGQTKEVRI 857
Score = 140 (54.3 bits), Expect = 1.3e-129, Sum P(5) = 1.3e-129
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 1500 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQ--EVNRMIAR 1557
QYK+D+ +VI AG+FD ++T EER L +LL +E +E + L E+N ++AR
Sbjct: 875 QYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEEN-DEKGELDDDELNEILAR 933
Query: 1558 SEDEVELFDQMDEE 1571
+DE+ LF QM E+
Sbjct: 934 GDDELRLFKQMTED 947
Score = 100 (40.3 bits), Expect = 1.3e-129, Sum P(5) = 1.3e-129
Identities = 37/131 (28%), Positives = 62/131 (47%)
Query: 794 QRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDART----AR----NRGVAKY 845
Q L ++ Q++ RE++LK + + AH + RT AR NR V Y
Sbjct: 244 QATRLTEVLERQQRSDRERRLKQKQCDYLQTVCAHGREINVRTKNAQARAQKANRAVLAY 303
Query: 846 HERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQT 905
H I +E +R + + +R++ALK ND E Y +++ D A+ + + L QT
Sbjct: 304 HSHIEKEEQRRAERNAKQRLQALKENDEEAYLKLI---------DQAKDTRI-THLLRQT 353
Query: 906 EEYLYKLGSKI 916
+ YL L + +
Sbjct: 354 DHYLDSLAAAV 364
Score = 73 (30.8 bits), Expect = 8.8e-127, Sum P(5) = 8.8e-127
Identities = 32/195 (16%), Positives = 78/195 (40%)
Query: 813 QLKSISQWRKKLLEAHWAIRDA---RTARNRGVAKYHERILREFSKRKDDDRNKRMEALK 869
Q+ ++ ++K L+ + DA R R + + ++R+ ++ KDD+ ++ +K
Sbjct: 135 QITPSAKQQRKYLQYQISEDDAIKNRMFRRMSDLESYPAVMRDVAELKDDNERLNLDTIK 194
Query: 870 NNDVERYREM-LLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXX 928
N + +++ L++QQ S+ L + + E + +
Sbjct: 195 RNALVELKKLRLIKQQESLRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEVLER 254
Query: 929 XXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNER 988
RL+ + +++ A G E+ +R + + A + +V Y+S +R
Sbjct: 255 QQRSDRERRLKQKQCDYLQTVCA-HGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQR 313
Query: 989 VMRQPSMLRAGTLRD 1003
+ + R L++
Sbjct: 314 RAERNAKQRLQALKE 328
Score = 46 (21.3 bits), Expect = 1.3e-129, Sum P(5) = 1.3e-129
Identities = 18/80 (22%), Positives = 34/80 (42%)
Query: 1807 RSIRVRPRHTVERPEER-SCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSL 1865
R R RP+ + +E + T + P + +++ + LR ++ + N L
Sbjct: 1022 RPTRGRPKRNIASVDETPALTLNGKPKKKRGPAPDTLTSEHRSLLRRVC-LEIYKAVNEL 1080
Query: 1866 RHDQSEPSSKSRRNLPSRKI 1885
D P +K LPS+K+
Sbjct: 1081 EDDNGRPLNKLFLELPSKKL 1100
Score = 39 (18.8 bits), Expect = 1.3e-129, Sum P(5) = 1.3e-129
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 481 VLKAQILAFRRLKK 494
+LK Q+LA+++L +
Sbjct: 74 ILKQQVLAYKKLSQ 87
Score = 39 (18.8 bits), Expect = 4.8e-119, Sum P(5) = 4.8e-119
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 1442 GQKREVKVIYMEAVVDK--ISSHQKEDELR 1469
G +R V+Y EAV D ++ E E R
Sbjct: 993 GARRRTPVVYDEAVRDAQWMAEMDMESEAR 1022
Score = 37 (18.1 bits), Expect = 8.9e-116, Sum P(4) = 8.9e-116
Identities = 35/142 (24%), Positives = 56/142 (39%)
Query: 1763 DELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVR--PR-HTVER 1819
D+ E EI GD + + T D E E +++R I+V P + E
Sbjct: 923 DDDELNEILARGDDEL--RLFKQMTEDL---ERESPYGKNKEKERLIQVSELPEFYQREE 977
Query: 1820 PEERS--CTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSR 1877
PE+ + + PL RG P D +R D + A + S ++ P+
Sbjct: 978 PEKTTDLLQEEPLGRGARRRTPVVYDEA----VR-DAQWMAEMDMES----EARPT---- 1024
Query: 1878 RNLPSRKIANAPKSRASLKTGR 1899
R P R IA+ ++ A G+
Sbjct: 1025 RGRPKRNIASVDETPALTLNGK 1046
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 1065 (380.0 bits), Expect = 6.9e-128, Sum P(5) = 6.9e-128
Identities = 260/732 (35%), Positives = 405/732 (55%)
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYH-ERILREFSKRKDDDR 861
+ + + M+++ L+ ++ +KL + RDAR +R + H + I+ ++ ++
Sbjct: 341 RATHRRMKKQSLRE-ARITEKLEKQQ---RDARESREKRKQDVHLQAIVNHGAELRETAS 396
Query: 862 NKRMEA--LKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXX 919
+R A L ++ ++ M E+Q + A +R L + E YL LG
Sbjct: 397 QQRQRAGKLGRMMLQHHQHMEREEQRRVERTAKQRLQALKA--NDEETYLKLLGQ----A 450
Query: 920 XXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRN---RFLEMNAPRDGSSVN 976
+L ++ R+ A GEE + + + +G
Sbjct: 451 KDSRISHLLNQTDGFLKQLAASVRQQQRNQAERYGEEHDFDDDDDEDIASGSDEEGEGRR 510
Query: 977 K--YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
K YY++AH + E + QPS+L GTL++YQ+ GLQWM+SLYNN LNGILADEMGLGKT+
Sbjct: 511 KIDYYAVAHRIKEEITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTI 570
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q ++LI +++E K N GP L+IVP + L NW E KW PSVS I Y G + R + Q
Sbjct: 571 QTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQ-QQ 629
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-R 1153
+ F VL+TTYE+I+ DR LSK+ W ++I+DE RMK+ +S L+ L +Y R R
Sbjct: 630 NIRWGNFQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYR 689
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
L+LTGTPLQN+ P +F + K+F +WF+ PF G D L E++
Sbjct: 690 LILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMD---LTEEEQ 746
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
+++I RLH++L PF+LRR +DVE LP K V++CR SA+Q+ + + AT V
Sbjct: 747 LLVIRRLHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQL-ATHNKMVVS 805
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL------SKDFLVKSC 1327
+ + +V + L+N M+LRK CNHP + + D + D + ++
Sbjct: 806 DGKGGKVGM---------RGLSNMLMQLRKLCNHPFV-FEQVEDQVNPGRGTNDLIWRTA 855
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GK +LDRIL K + TGHRVL+F MT++++I+E++L+ R + Y R+DG+T +DR +
Sbjct: 856 GKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLL 915
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN+ DS+ F FLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQK EV
Sbjct: 916 KLFNAPDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 975
Query: 1448 KVIYMEAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDM 1505
+++ + I+S+ E+++ R+ +D++ + ++ R+ + + ++
Sbjct: 976 RILRL------ITSNSVEEKILERAQFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLET 1029
Query: 1506 ADEVINAGRFDQ 1517
A+ AG D+
Sbjct: 1030 AEGTDQAGDQDE 1041
Score = 137 (53.3 bits), Expect = 6.9e-128, Sum P(5) = 6.9e-128
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 1500 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETV-HDVPSLQEVNRMIARS 1558
Q+K+DM +VI AG+FD ++T+EER L TLL E + D ++N ++ARS
Sbjct: 995 QFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLETAEGTDQAGDQDEMDDDDLNNIMARS 1054
Query: 1559 EDEVELFDQMDEE 1571
++E+ +F +MD E
Sbjct: 1055 DEELAVFQRMDRE 1067
Score = 90 (36.7 bits), Expect = 4.3e-09, Sum P(5) = 4.3e-09
Identities = 31/135 (22%), Positives = 64/135 (47%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRG 841
+Q + R+ E+ + ++ +K ++ L++I +L E R R
Sbjct: 349 KQSLREARITEKLEKQQRDARESREKRKQDVHLQAIVNHGAELRETASQQRQRAGKLGRM 408
Query: 842 VAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSF 901
+ ++H+ + RE +R + +R++ALK ND E Y ++L G A + + +S
Sbjct: 409 MLQHHQHMEREEQRRVERTAKQRLQALKANDEETYLKLL--------GQAKD--SRISHL 458
Query: 902 LTQTEEYLYKLGSKI 916
L QT+ +L +L + +
Sbjct: 459 LNQTDGFLKQLAASV 473
Score = 60 (26.2 bits), Expect = 6.9e-128, Sum P(5) = 6.9e-128
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 535 SGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAP 594
SG + DQL+ L N A + + N+Q P+ + K +P AV +
Sbjct: 136 SGSFSADQLQTLR-NQIMAFKMLTKNLQIPPRVQQQLFMSKKVTTPAPSDNVAVAESVLE 194
Query: 595 VVVPGKEEQQAPVSSVKSDQE 615
GK EQ A + V + +E
Sbjct: 195 KFSQGKPEQAAATADVSNAKE 215
Score = 54 (24.1 bits), Expect = 6.9e-128, Sum P(5) = 6.9e-128
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 1801 PKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTE 1855
P+ KRKR + +P T+ P++R+ L+ +L+ M+ + PA +D+E
Sbjct: 1208 PQPKRKRGRQAKPVETLS-PDDRAALQQILNNVYQALM--DMEQELPAD-SSDSE 1258
Score = 48 (22.0 bits), Expect = 1.2e-126, Sum P(5) = 1.2e-126
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 474 FTKHQLHVLKAQILAFRRLKK 494
F+ QL L+ QI+AF+ L K
Sbjct: 139 FSADQLQTLRNQIMAFKMLTK 159
Score = 38 (18.4 bits), Expect = 6.9e-128, Sum P(5) = 6.9e-128
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPS--QQTLGGQGM 233
+Q + ++Q+ Q QQQ+ Q+ + + S Q+ + G+
Sbjct: 62 QQAFQKQRQLAQQQQQLQAQRQQQQNGSSTQEAVAPNGV 100
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 1052 (375.4 bits), Expect = 1.5e-121, Sum P(5) = 1.5e-121
Identities = 232/505 (45%), Positives = 308/505 (60%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQK 1464
Q+ EV+V+ + +V +KI + K
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAK 1219
Score = 105 (42.0 bits), Expect = 1.5e-121, Sum P(5) = 1.5e-121
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 444 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLT 501
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 502 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 553
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 554 --LQQTDEYVANL 564
Score = 89 (36.4 bits), Expect = 1.5e-121, Sum P(5) = 1.5e-121
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 1500 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 1543
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 1219 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRH 1261
Score = 84 (34.6 bits), Expect = 1.5e-121, Sum P(5) = 1.5e-121
Identities = 34/127 (26%), Positives = 63/127 (49%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEV 1595
+VP + VN+MIAR E+E +LF +MD EE + R D++P W+ K+
Sbjct: 1295 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD- 1350
Query: 1596 NATIANLSKKPSKNILFGSNIG----VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSE 1651
+A + L+ + + +FG VD + TE K+ K + +E+++E+ +
Sbjct: 1351 DAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE-KQWLKAIEEGTLEEIEEEVRQKKS 1409
Query: 1652 ASSDERN 1658
+ +R+
Sbjct: 1410 SRKRKRD 1416
Score = 75 (31.5 bits), Expect = 1.5e-121, Sum P(5) = 1.5e-121
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 469 QQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QQ G F ++QLH L+AQI+A++ L +G+ LP L A+
Sbjct: 164 QQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAV 204
Score = 57 (25.1 bits), Expect = 1.2e-119, Sum P(5) = 1.2e-119
Identities = 28/130 (21%), Positives = 45/130 (34%)
Query: 292 QSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPT 351
Q + + + MG P SP+ Q SP + G S HA+ +
Sbjct: 92 QMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSP-LGG--SEHASSPVPASGPSSGPQMSSG 148
Query: 352 VSPSPL-GSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPP-IHPPQTSLN 409
+PL G+ A Q +H Q+ + + +A G LP +
Sbjct: 149 PGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKR 208
Query: 410 MTPGVDQPLP 419
PG+ Q +P
Sbjct: 209 PMPGMQQQMP 218
Score = 54 (24.1 bits), Expect = 1.3e-119, Sum P(6) = 1.3e-119
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPV 420
PS P A+ P+ PPQT +PG QP P+
Sbjct: 311 PSPAPPAVPPAASPVMPPQTQ---SPGQPAQPAPM 342
Score = 45 (20.9 bits), Expect = 2.1e-10, Sum P(5) = 2.1e-10
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY 1148
D +S+VD ++II + Q + D V LAR L Y
Sbjct: 694 DSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
Score = 42 (19.8 bits), Expect = 4.3e-118, Sum P(5) = 4.3e-118
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 390 QPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
QP + PP PP S M P P
Sbjct: 306 QPTGRPSPAPPAVPPAASPVMPPQTQSP 333
Score = 39 (18.8 bits), Expect = 1.3e-119, Sum P(6) = 1.3e-119
Identities = 17/61 (27%), Positives = 19/61 (31%)
Query: 299 HKANESNMGAPS-SPVP--VSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
H NM P S VP + Q P P AN +PT PS
Sbjct: 253 HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
Query: 356 P 356
P
Sbjct: 313 P 313
Score = 39 (18.8 bits), Expect = 1.2e-114, Sum P(5) = 1.2e-114
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 542 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 584
Score = 38 (18.4 bits), Expect = 1.5e-114, Sum P(5) = 1.5e-114
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 582
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 1052 (375.4 bits), Expect = 2.6e-120, Sum P(5) = 2.6e-120
Identities = 232/505 (45%), Positives = 308/505 (60%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQK 1464
Q+ EV+V+ + +V +KI + K
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAK 1219
Score = 105 (42.0 bits), Expect = 2.6e-120, Sum P(5) = 2.6e-120
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 444 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLT 501
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 502 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 553
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 554 --LQQTDEYVANL 564
Score = 89 (36.4 bits), Expect = 2.6e-120, Sum P(5) = 2.6e-120
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 1500 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 1543
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 1219 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRH 1261
Score = 75 (31.5 bits), Expect = 2.6e-120, Sum P(5) = 2.6e-120
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 469 QQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QQ G F ++QLH L+AQI+A++ L +G+ LP L A+
Sbjct: 164 QQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAV 204
Score = 75 (31.5 bits), Expect = 2.6e-120, Sum P(5) = 2.6e-120
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEV 1595
+VP + VN+MIAR E+E +LF +MD EE + R D++P W+ K+
Sbjct: 1295 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD- 1350
Query: 1596 NATIANLSKKPSKNILFG 1613
+A + L+ + + +FG
Sbjct: 1351 DAEVERLTCEEEEEKMFG 1368
Score = 57 (25.1 bits), Expect = 2.0e-118, Sum P(5) = 2.0e-118
Identities = 28/130 (21%), Positives = 45/130 (34%)
Query: 292 QSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPT 351
Q + + + MG P SP+ Q SP + G S HA+ +
Sbjct: 92 QMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSP-LGG--SEHASSPVPASGPSSGPQMSSG 148
Query: 352 VSPSPL-GSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPP-IHPPQTSLN 409
+PL G+ A Q +H Q+ + + +A G LP +
Sbjct: 149 PGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKR 208
Query: 410 MTPGVDQPLP 419
PG+ Q +P
Sbjct: 209 PMPGMQQQMP 218
Score = 54 (24.1 bits), Expect = 2.4e-118, Sum P(6) = 2.4e-118
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPV 420
PS P A+ P+ PPQT +PG QP P+
Sbjct: 311 PSPAPPAVPPAASPVMPPQTQ---SPGQPAQPAPM 342
Score = 45 (20.9 bits), Expect = 1.6e-09, Sum P(5) = 1.6e-09
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY 1148
D +S+VD ++II + Q + D V LAR L Y
Sbjct: 694 DSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
Score = 42 (19.8 bits), Expect = 7.3e-117, Sum P(5) = 7.3e-117
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 390 QPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
QP + PP PP S M P P
Sbjct: 306 QPTGRPSPAPPAVPPAASPVMPPQTQSP 333
Score = 39 (18.8 bits), Expect = 2.4e-118, Sum P(6) = 2.4e-118
Identities = 17/61 (27%), Positives = 19/61 (31%)
Query: 299 HKANESNMGAPS-SPVP--VSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
H NM P S VP + Q P P AN +PT PS
Sbjct: 253 HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
Query: 356 P 356
P
Sbjct: 313 P 313
Score = 39 (18.8 bits), Expect = 2.0e-113, Sum P(5) = 2.0e-113
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 542 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 584
Score = 38 (18.4 bits), Expect = 2.6e-113, Sum P(5) = 2.6e-113
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 582
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 731 (262.4 bits), Expect = 3.4e-118, Sum P(2) = 3.4e-118
Identities = 184/530 (34%), Positives = 289/530 (54%)
Query: 776 IMAMPDRQYR---KFVRLCERQRVELMRQVQTSQKAMR----EKQLKSISQWRKKLLEAH 828
+M +P R Y FV + Q R + +++ +R EK L +Q RK E
Sbjct: 167 MMRLPRRMYGVGDSFVMEADDQ----FRNKRDAERLLRLEEEEKNLIETTQ-RKFFAEVL 221
Query: 829 WAIRDART---ARNRGVAKYHERILREFSK-RKDDDRNKRME--ALKNNDVERYREMLLE 882
A+R+ + A +R + ++ + K R+ R +++ ALK++D E Y ++ E
Sbjct: 222 NAVREFQLQIQASHRRCKQRNDGVQAWHGKQRQRATRAEKLRIMALKSDDQEEYMKLAKE 281
Query: 883 QQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGL- 941
+ E+ L+ FL +T + LG+ + L +
Sbjct: 282 SKN-------EK---LTLFLEETNKIFVSLGAAVQRQKDAKLSENTKLLKGSESDLSDVD 331
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA-HAVNERVMRQPSMLRAGT 1000
+ E+V A E++ + + N +G + ++LA H++ E+V +QPS+L+ G
Sbjct: 332 APEDVLPAQDI---EIIDSDNNDDSNDLLEGE---RQFNLAIHSIQEKVTKQPSLLQGGE 385
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR YQ+ GLQWM+SLYNN NGILADEMGLGKT+Q +ALIAYL+E K +GPHLI+ P A
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKA 445
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
VL NW++E W PS+S Y G+K++R+ + ++ +A KFNVL+T Y+ IM D++ L K
Sbjct: 446 VLPNWENEFALWAPSISAFLYDGSKEKRTEIRAR-IAGGKFNVLITHYDLIMRDKAFLKK 504
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+DW Y+I+DE R+K+ E LA+ L YR +RRLLLTGTP+QN P +
Sbjct: 505 IDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHI 564
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F++ F +WF+ PF + G D E++++II+RLH ++ PF+LRR+ +VE
Sbjct: 565 FNSIHNFEEWFNTPFAECGSASLTD------EEELLIINRLHHVIRPFLLRRKKSEVEKF 618
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
LP K ++L+C MSA Q Y + G + + + K + +N Q +
Sbjct: 619 LPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLR 668
Score = 514 (186.0 bits), Expect = 3.4e-118, Sum P(2) = 3.4e-118
Identities = 153/481 (31%), Positives = 256/481 (53%)
Query: 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267
L E++++II+RLH ++ PF+LRR+ +VE LP K ++L+C MSA Q Y + G
Sbjct: 587 LTDEEELLIINRLHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVG 646
Query: 1268 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-FSDLSKDFLVKS 1326
+ + + K K+L N M+LRK CNHP L ++ K +V++
Sbjct: 647 RVGLHSGNGKS-------------KSLQNLTMQLRKCCNHPYLFVGADYNMCKKPEIVRA 693
Query: 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386
GK +LDR+L KL++ GHR+LLFS MT+L+D+LE YL +Y R+DG+T + R
Sbjct: 694 SGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGIL 753
Query: 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446
+ FN DS F+FLLS RA G GLNLQ+ADT+II+D D NP+ ++QA RAHRIGQK+E
Sbjct: 754 LKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKE 813
Query: 1447 VKVIYMEAV--VDKISSHQKEDELRSGGTVDLEDDL-----AGKDRYIGSIEGLIRNNIQ 1499
V+V + ++ ++++ + + ++ V ++ L +DR +E ++
Sbjct: 814 VRVFVLVSIGSIEEVILERAKQKMGIDAKV-IQAGLFNTTSTAQDRR-EMLEEIMSKGTS 871
Query: 1500 QYKIDMADE-VINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE--VNRMIA 1556
D+ E IN R RT EE E + DEER ++ + ++E V
Sbjct: 872 SLGEDVPSEREIN--RLAART--EEEFWMFEQM--DEERRKKENYKTRLMEEKEVPEWAY 925
Query: 1557 RSEDEVELFDQMDEEFGWI------EEMTRYDQVP--KWLRA-STKEVNATIANLSKK-- 1605
SE + + + + FG + +E D + +W++A +++ +A+ + +K
Sbjct: 926 TSETQEDKTNAKNH-FGSLTGKRKRKEAVYSDSLSDLQWMKAMESEDEDASKVSQKRKRT 984
Query: 1606 PSKNILF-GSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGE--YS-EASSDERNGYP 1661
+K + GS E + E++ + +K + KE ++E + +S + + +R+ YP
Sbjct: 985 DTKTRMSNGSKAEAVLSESDEEKEEEEEERKEESGKESEEENEKPLHSWKTNKKKRSRYP 1044
Query: 1662 V 1662
V
Sbjct: 1045 V 1045
Score = 38 (18.4 bits), Expect = 5.6e-68, Sum P(2) = 5.6e-68
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 1771 AVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 1808
AV DS D Q W E EDE + KRKR+
Sbjct: 952 AVYSDSLSDLQ----WMKAM-ESEDEDASKVSQKRKRT 984
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 1052 (375.4 bits), Expect = 4.4e-118, Sum P(3) = 4.4e-118
Identities = 232/505 (45%), Positives = 308/505 (60%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 61 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 120
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 121 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 179
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 180 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 239
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 240 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 294
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 295 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 354
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 355 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 407
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 408 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 467
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 468 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 527
Query: 1443 QKREVKVIYM---EAVVDKISSHQK 1464
Q+ EV+V+ + +V +KI + K
Sbjct: 528 QQNEVRVLRLCTVNSVEEKILAAAK 552
Score = 89 (36.4 bits), Expect = 4.4e-118, Sum P(3) = 4.4e-118
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 1500 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 1543
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 552 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRH 594
Score = 84 (34.6 bits), Expect = 4.4e-118, Sum P(3) = 4.4e-118
Identities = 34/127 (26%), Positives = 63/127 (49%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEV 1595
+VP + VN+MIAR E+E +LF +MD EE + R D++P W+ K+
Sbjct: 628 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD- 683
Query: 1596 NATIANLSKKPSKNILFGSNIG----VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSE 1651
+A + L+ + + +FG VD + TE K+ K + +E+++E+ +
Sbjct: 684 DAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE-KQWLKAIEEGTLEEIEEEVRQKKS 742
Query: 1652 ASSDERN 1658
+ +R+
Sbjct: 743 SRKRKRD 749
Score = 54 (24.1 bits), Expect = 6.4e-115, Sum P(3) = 6.4e-115
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 1759 KRMPDELEEGEIAVSGDSH---MDHQQS---GSWTHDRDEGEDEQVLQPKIKRKRSIRVR 1812
+R+ E EE ++ G H +D+ S W +EG E++ + ++++K+S R R
Sbjct: 688 ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEI-EEEVRQKKSSRKR 746
Query: 1813 PRHTVERPEERSCTDTPLHRGDSS 1836
R + P + + + D S
Sbjct: 747 KRDSDAGPSTPTTSTRSRDKDDES 770
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 1078 (384.5 bits), Expect = 2.8e-117, Sum P(4) = 2.8e-117
Identities = 263/724 (36%), Positives = 408/724 (56%)
Query: 956 EVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSL 1015
EV + N+ + R+ + YY +AH + E++ QP++L G L++YQ+ GL+WM+SL
Sbjct: 459 EVAVENKSDDKAELREKTD---YYEVAHRIKEKITEQPTILVGGKLKEYQMKGLEWMVSL 515
Query: 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS 1075
YNN LNGILADEMGLGKT+Q ++L+ YL+E K + LIIVP + + NW E KW PS
Sbjct: 516 YNNHLNGILADEMGLGKTIQSISLVTYLIE-KKHENKFLIIVPLSTITNWTLEFEKWAPS 574
Query: 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1135
+ I Y G++ QR R ++ F VL+TTYE+++ +R L+K + ++IIDE RMK
Sbjct: 575 IKVIVYKGSQQQR-RSLQPDIRYGNFQVLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMK 633
Query: 1136 DRESVLARDLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPF 1194
+ +S L++ L Y + + RL+LTGTPLQN+ P +F++ K+F DWF+ PF
Sbjct: 634 NAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPF 693
Query: 1195 QKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSA 1254
G + L E+ +++I RLH++L PF+LRR +DVE LP KV VL+C +S
Sbjct: 694 ANTGAQEKIE---LTEEESLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSG 750
Query: 1255 IQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL---- 1310
+Q +Y + L V + K+ I K LNN+ M+LRK CNHP +
Sbjct: 751 LQYVLYQQMLKHNALFVGADVGGA---KSGI------KGLNNKIMQLRKICNHPFVFEEV 801
Query: 1311 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369
+ S L+ D + + GK +LDR+L K +++GHRVL+F MT+++DI+E++L+W+ +
Sbjct: 802 ESVLNSSRLTNDLIWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDM 861
Query: 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 1429
Y R+DG+T E+R+ + FN+ DSD F FLLS RA G GLNLQ+ADTVII+D D NP
Sbjct: 862 KYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPH 921
Query: 1430 NEEQAVARAHRIGQKREVKVIYM---EAVVDKI--SSHQKED---ELRSGGTVDLEDDLA 1481
+ QA RAHRIGQK EV+++ + ++V + I +HQK D ++ G D +
Sbjct: 922 QDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNKSTAE 981
Query: 1482 GKDRYIGSIEGLIRNNIQQYKID-MADEVINAGRFDQRTTHEERRMTLETLLHDEERYQE 1540
++ ++ + N + D + D+ +N + EE ++ ++ DEER E
Sbjct: 982 EQEAFLKRLLEADANGADNEENDSLDDDELN----EILARSEEEKVLFASM--DEERKSE 1035
Query: 1541 TVHDVPSLQEVNRMIAR-SEDEVELFDQMDEEFGWIEEM--TRYDQ---VPKWLRASTKE 1594
V L E + + A +ED F++ ++E + + RYD +WL+A +
Sbjct: 1036 KVPYKSRLIEKDELPAVFTEDISHHFEKKEKELSKMRDKKRVRYDDGLSEEQWLKAMDDD 1095
Query: 1595 VNATIANLSKKPSKNILFGS-NIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEAS 1653
N T+ K+ + I N + G +E + K G E DDE ++ EA+
Sbjct: 1096 -NDTVEEAIKRKEERIAKRKRNKAIREGLLEEDIKDDEVG-------EEDDE--DFEEAA 1145
Query: 1654 SDER 1657
+
Sbjct: 1146 QPRK 1149
Score = 79 (32.9 bits), Expect = 2.8e-117, Sum P(4) = 2.8e-117
Identities = 26/149 (17%), Positives = 71/149 (47%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEA 827
+++Q+ +++A+ + +K E + + + ++ + + +S +++ + +
Sbjct: 312 KIEQRNPQLLAVQLEELKKL----EAREAKRKQHIEKVDLVVEKSTSRSEAKYVRDHYRS 367
Query: 828 HWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSI 887
H+ +R + +H+ +E SK+ + +R++AL++ND E Y ++L
Sbjct: 368 HYLVRQ--------INNFHQTTEKEESKKLERTAKQRLQALRSNDEEAYLKLL------- 412
Query: 888 PGDAAERYAVLSSFLTQTEEYLYKLGSKI 916
D + + + + L QT ++L L K+
Sbjct: 413 --DKTKDHRI-THLLKQTNQFLDSLTEKV 438
Score = 56 (24.8 bits), Expect = 7.3e-115, Sum P(4) = 7.3e-115
Identities = 40/233 (17%), Positives = 89/233 (38%)
Query: 669 KYHGP-LFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKK 727
KY P L P + S + N LA +++L + LE + KR ++++K
Sbjct: 288 KYADPNLKSLPLALSEKRSFNVRPKIEQRNPQLLAVQLEEL---KKLEAREAKRKQHIEK 344
Query: 728 ISGILAVNLER---KRIRPDLVLRLQIEXXXXXXXXXXXXXXXEVDQQ-QQEIMAMPDRQ 783
+ ++ + R K +R + ++++ +Q + A+
Sbjct: 345 VDLVVEKSTSRSEAKYVRDHYRSHYLVRQINNFHQTTEKEESKKLERTAKQRLQALRSND 404
Query: 784 YRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVA 843
+++L ++ + + + LK +Q+ L E A ++ + + G
Sbjct: 405 EEAYLKLLDKTKDHRITHL-----------LKQTNQFLDSLTEKVRAQQEEASGGSMGTP 453
Query: 844 KYHERILREFSKRKDDDRNKRMEALKNNDV-ERYREMLLEQQTSIPGDAAERY 895
++ + + K DD+ + E +V R +E + EQ T + G + Y
Sbjct: 454 RHGSPEVAV--ENKSDDKAELREKTDYYEVAHRIKEKITEQPTILVGGKLKEY 504
Score = 40 (19.1 bits), Expect = 2.8e-117, Sum P(4) = 2.8e-117
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 392 VAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSG-PENSQ 430
+A GNG + P + + + PG N S P+N +
Sbjct: 6 IANGNGSVGVTPALSQVQLQPGSANLTTQSNDSVVPKNKE 45
Score = 38 (18.4 bits), Expect = 2.8e-117, Sum P(4) = 2.8e-117
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1789 DRDEGEDEQVLQPKIKRKRSIRVRPRH 1815
+ D+ + E+ QP+ KR+R R H
Sbjct: 1135 EEDDEDFEEAAQPR-KRQRRARTPLPH 1160
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 1037 (370.1 bits), Expect = 2.8e-117, Sum P(5) = 2.8e-117
Identities = 225/497 (45%), Positives = 304/497 (61%)
Query: 965 EMNAPRDGSSVN-KYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGI 1023
E+ AP N Y+ +AH ++E V QP + GTL+DYQ+ GL+WMLSLYNN LNGI
Sbjct: 833 ELEAPISEEDKNLDYFKVAHRIHEEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGI 891
Query: 1024 LADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVG 1083
LADEMGLGKT+Q +A I YL+E K GP LIIVP + L NW E KW PSV I Y G
Sbjct: 892 LADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKG 951
Query: 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143
R L SQ + + FNVL+TT+E+I+ DR LS++ W ++IIDE R+K+ +S L
Sbjct: 952 PPQLRKTLQSQ-IRSSNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTS 1010
Query: 1144 DLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHN 1202
L Y Q RL+LTGTPLQN+ P++F++ K+F +WF+ PF G
Sbjct: 1011 TLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTG---G 1067
Query: 1203 ADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 1262
D L E+ ++II RLH++L PF+ RR +DVE LP KV V++C +S +Q +Y
Sbjct: 1068 QDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQ 1127
Query: 1263 IKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK-- 1320
+K G L VD E K + K L N M+L+K CNHP + F D+ +
Sbjct: 1128 MKKHGMLFVDGEKGKTGI-----------KGLQNTVMQLKKICNHPFI----FEDVERAI 1172
Query: 1321 -------DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373
D L ++ GK +LDRIL KL TGH+ L+F MT+++ I+E+YL+ + Y R
Sbjct: 1173 DPSGTNVDLLWRAAGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLR 1232
Query: 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1433
+DG+T +DR S + FN SD +IF+LS RA G GLNLQ+ADTVII+D D NP + Q
Sbjct: 1233 LDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1292
Query: 1434 AVARAHRIGQKREVKVI 1450
A RAHRIGQ +EV+++
Sbjct: 1293 AQDRAHRIGQTKEVRIL 1309
Score = 139 (54.0 bits), Expect = 2.8e-117, Sum P(5) = 2.8e-117
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 1491 EGLIRNNI---QQYKIDMADEVINAGRFDQRTTHEERRMTLETLL-HDEERYQETVHDVP 1546
E I NI QYK+D+ +VI AG+FD ++T EER L +LL HD + + +
Sbjct: 1314 EKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTYGEL 1373
Query: 1547 SLQEVNRMIARSEDEVELFDQMDEE 1571
E+N +I+R+++E+ LF ++D+E
Sbjct: 1374 QDDELNELISRTDEELVLFKKLDKE 1398
Score = 100 (40.3 bits), Expect = 2.8e-117, Sum P(5) = 2.8e-117
Identities = 89/433 (20%), Positives = 171/433 (39%)
Query: 535 SGKIAEDQLRHLESNGKDAQAVSSSNVQSLPK-EEA-----YAGDDKAAVS-PVGQG--- 584
+ K+ QL L+S ++S N Q P ++A Y ++ + S P Q
Sbjct: 427 TSKLNHAQLAMLKSQIVAYNCLNSPNGQVPPAVQQAIFGRVYGASNEVSPSMPFQQNVPQ 486
Query: 585 MSAVTKEPAPVVVPGKEEQQAP-VSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSA 643
MS+V K+ P +AP + ++ + + +++ A S P +
Sbjct: 487 MSSVKKD-TPTRDANMRTSKAPYIQNIPNQFQRRAYSATIPVKNESLAKPSVSPMPLQQS 545
Query: 644 CDAVQVKKPAQATTALQPKDVGAARKY-HGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLA 702
+V K AQ T + R Y P+ PF K S + +++ S +++
Sbjct: 546 TGKTEVAKRAQFPTNVNYSSCVDPRTYVKTPI---PF--SKFSSSENLSLIPSLLPPSIS 600
Query: 703 YDVKDLLSEEGLEVLQKKRSENLKKISGILAVN---LERKRIRPDLVLR-LQIEXXXXXX 758
+D L SE + R + L+K + +VN L++ + + + LR L++
Sbjct: 601 WDDVFLSSEIAIACSIANRIDFLEKENRPKSVNKKILQQDKSKSMIELRCLRLLEKQRSL 660
Query: 759 XXXXXXXXXEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ----- 813
D + + R ++ + E V + + Q ++ AMR+K+
Sbjct: 661 RETINSVIPHSDSLAAGNLRLMFRNVKRQT-MQEANLVLALAEKQKTEHAMRQKEKLLTH 719
Query: 814 LKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDV 873
L+SI RK ++ A+T R + + +H + +E KR + +R++AL+ +D
Sbjct: 720 LRSIMLHRKSIVTKVDKQNKAKTQRCKDIINFHAHLEKEEKKRIERSARQRLQALRADDE 779
Query: 874 ERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXX 933
Y ++L D A+ + + L QT++YL L +
Sbjct: 780 AAYLQLL---------DKAKDTRI-THLLKQTDQYLENLTRAVRIQQSNIHSGNTSGKGS 829
Query: 934 XXXRLQG-LSEEE 945
L+ +SEE+
Sbjct: 830 NSAELEAPISEED 842
Score = 53 (23.7 bits), Expect = 2.8e-117, Sum P(5) = 2.8e-117
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 478 QLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QL +LK+QI+A+ L G +P + +AI
Sbjct: 434 QLAMLKSQIVAYNCLNSPNGQVPPAVQQAI 463
Score = 43 (20.2 bits), Expect = 6.2e-110, Sum P(4) = 6.2e-110
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 348 ARPTVSPSPLGSTT 361
A+P+VSP PL +T
Sbjct: 533 AKPSVSPMPLQQST 546
Score = 41 (19.5 bits), Expect = 2.8e-117, Sum P(5) = 2.8e-117
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 271 RNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVP------VSKQQVTSPT 324
RN ++ N AQ+ I++ + H A M SS P + KQQ T PT
Sbjct: 30 RNQGATEENNPEF-AQISSILRM-VQRAHYARMQQMRNQSSEFPDAENTNLRKQQDTLPT 87
Query: 325 IAGENSP 331
N P
Sbjct: 88 TGFNNLP 94
Score = 37 (18.1 bits), Expect = 1.8e-109, Sum P(3) = 1.8e-109
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 302 NESNMGAPSSPVPVSKQQVTSPTIA 326
N+ A S+ +PV + + P+++
Sbjct: 514 NQFQRRAYSATIPVKNESLAKPSVS 538
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 1070 (381.7 bits), Expect = 3.5e-117, Sum P(9) = 3.5e-117
Identities = 221/479 (46%), Positives = 308/479 (64%)
Query: 973 SSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGK 1032
S + YYS AH++ E ++ QP++L G L+ YQ+ GLQWM+SLYNNKLNGILADEMGLGK
Sbjct: 1683 SKAHSYYSKAHSIQEDIIEQPALLEGGKLKPYQMQGLQWMVSLYNNKLNGILADEMGLGK 1742
Query: 1033 TVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLF 1092
T+Q +AL++YL+E K N GP L++VP + L NW E KW P V + Y G K R F
Sbjct: 1743 TIQTIALVSYLIEVKKNNGPFLVVVPLSTLSNWGQEFSKWAPKVKRVLYYGDKPARKSKF 1802
Query: 1093 SQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQ 1151
+ +A +FN +VTTYE+I+ D++ LSK+ W Y+I+DE RMK+ S L+ L Y +
Sbjct: 1803 EEFIAPGQFNAVVTTYEYIIKDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSR 1862
Query: 1152 RRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1211
RLLLTGTPLQN P +FD + F WF+ PF + G ++ E
Sbjct: 1863 YRLLLTGTPLQNSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNE-----E 1917
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
++++II RLH++L PF+LRR ++VE LP KV VL+C MSA Q+ +YD IK G ++
Sbjct: 1918 EQLLIIQRLHKVLRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIKTKGVSKL 1977
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLW 1331
NP K+ K L N ++LRK CNHP L Y ++ D L++ GK
Sbjct: 1978 ASSGG---ADGNP----KLAKGLKNTYVQLRKICNHPYLFYDDEYNID-DNLIRYAGKFD 2029
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
+LDR+L KL+ GHRVL+FS MT+L++ILE + ++ + R+DG+T ++R + FN
Sbjct: 2030 LLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLELFN 2089
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
+ +S+ FIF+LS RA G GLNLQ+ADTVII+D D NP+ + QA RAHRIGQK+ V+V+
Sbjct: 2090 APNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVL 2148
Score = 138 (53.6 bits), Expect = 3.5e-117, Sum P(9) = 3.5e-117
Identities = 37/128 (28%), Positives = 67/128 (52%)
Query: 1501 YKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSED 1560
+K ++ ++I AG+F+ ++ +R+ LE L+ +E + VP+ ++N MIARS +
Sbjct: 2166 FKKELDKKIIQAGQFNNKSNRSDRKKMLEDLMTQDETAEMEKQTVPTDSQINEMIARSPE 2225
Query: 1561 EVELFDQMDEEF------GWIE--------EMTRYDQVPKWLRASTKEVN-----ATIAN 1601
E EL++ MD+E W E +++ D++P W+ TKEV + + N
Sbjct: 2226 EFELYENMDKERMEIDQKKWDEAGKKGEAKRLSQEDEIPSWI---TKEVELGDDLSFVLN 2282
Query: 1602 LSKKPSKN 1609
S KP +
Sbjct: 2283 QSIKPGSS 2290
Score = 70 (29.7 bits), Expect = 3.5e-117, Sum P(9) = 3.5e-117
Identities = 41/181 (22%), Positives = 77/181 (42%)
Query: 801 QVQTSQKAMREKQ-LKSISQWRKKLLEAHW-AIRDARTARNRGVAKYHERILREFSKRKD 858
Q Q++++ R K L I K+ E H + + R A + + +E +R+
Sbjct: 1291 QQQSNEEKNRFKDFLGQILNHSKEFKEYHANKMTKIKKMTKRVTAYFILQEKKEQQQRER 1350
Query: 859 DDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITX 918
++R +R+ ALK ND +Y + LLEQ + +R L QT E+L K+ +
Sbjct: 1351 EER-ERLRALKTNDESKYLK-LLEQTKN------QR---LRELFDQTNEFLDKISHLLQK 1399
Query: 919 XXXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACA--GEEVMIRNRFLEMNAPRDGSSVN 976
+ Q L +++ + A E++ I N +++ DG++ N
Sbjct: 1400 EKISIQEKEENEEAIRRQQDQLLLQQKEKEGEEDAKQSEKISIMNITNDVDIDTDGNTTN 1459
Query: 977 K 977
+
Sbjct: 1460 R 1460
Score = 67 (28.6 bits), Expect = 4.4e-117, Sum P(9) = 4.4e-117
Identities = 34/145 (23%), Positives = 53/145 (36%)
Query: 105 QQHAISQESQNRSQGVEHQLLNPVHXXXXXXXXXXXXKSASVLQSQQQAKLGMLGPASGK 164
QQH Q+ Q + Q HQ ++ KSA QQQ + +L +
Sbjct: 140 QQHQ-QQQLQQQQQQHHHQQQQNINTPPMNINSPNINKSAP---QQQQQQYHLLLQQQQQ 195
Query: 165 DQDMRMGNLKMQELIXXXXXXXXXXXXXXXXXEQFGRGEK-QMEQPQQQVSDQKGEPKPP 223
Q + + Q+L +Q + ++ Q +Q QQQ + Q + +
Sbjct: 196 QQQLLQQQQQQQQLQQQQLQQQQLQQQQAQLQQQQAQQQQAQQQQQQQQQAQQAQQQQQQ 255
Query: 224 SQQTLGGQGMAANIIRPMQAAQHQQ 248
QQ Q N+ MQ Q QQ
Sbjct: 256 QQQQQQQQHQQTNM---MQQQQQQQ 277
Score = 63 (27.2 bits), Expect = 1.8e-116, Sum P(9) = 1.8e-116
Identities = 30/127 (23%), Positives = 47/127 (37%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIXXXXXX 256
+Q + ++Q +Q QQQ Q+ +P+ QQ Q + +P Q Q QQ
Sbjct: 361 QQQQQQQQQQQQQQQQPQQQQHQPQTQQQQQQQQQQQQSPQQQPQQFLQPQQQYHQHHQQ 420
Query: 257 XXXXXXXXXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPS----SP 312
+ I Q A+ AQL H ++ NM S SP
Sbjct: 421 HQQHQHQQQPQQQQPQIQ-QQQQQAAYEAQLKQQQMKHQQQQHLQHQQNMNVTSPNMTSP 479
Query: 313 -VPVSKQ 318
+P ++Q
Sbjct: 480 NIPSTQQ 486
Score = 57 (25.1 bits), Expect = 3.5e-117, Sum P(9) = 3.5e-117
Identities = 26/145 (17%), Positives = 52/145 (35%)
Query: 554 QAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSD 613
QA + Q +++ ++ V P Q ++P P + + QQ+ S
Sbjct: 959 QAQQTQQTQPQTQQQTQP-QPQSQVQPEQQQQQTQAQQPQPQQIQQPQHQQSQQQSENLQ 1017
Query: 614 QEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGP 673
Q+ L + QQQ + +++ PQ + Q + Q++ Q + + P
Sbjct: 1018 QQQPEHLQQQQQQQQEHLQQPENLQPQPQQ-QSQQQPEQVQSSEQTQSMQAQQQPEQNQP 1076
Query: 674 LFDFPFFTRKHDSVGSTAMVNSSNN 698
T++ S +N N
Sbjct: 1077 QQQSEQITQQQQSQQDPQQINQQPN 1101
Score = 57 (25.1 bits), Expect = 2.9e-113, Sum P(7) = 2.9e-113
Identities = 31/121 (25%), Positives = 42/121 (34%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRP----MQAAQHQQSIXXXXXXXX 258
+ Q QPQ Q Q+ +P+P SQ Q +P +Q QHQQS
Sbjct: 962 QTQQTQPQTQ---QQTQPQPQSQVQPEQQQQQTQAQQPQPQQIQQPQHQQSQQQSENLQQ 1018
Query: 259 XXXXXXXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQ 318
++ L QP N Q Q V + + +S M A P Q
Sbjct: 1019 QQPEHLQQQQQQQQEHLQQPENLQPQPQQQSQQQPEQVQSSEQTQS-MQAQQQPEQNQPQ 1077
Query: 319 Q 319
Q
Sbjct: 1078 Q 1078
Score = 55 (24.4 bits), Expect = 3.5e-117, Sum P(9) = 3.5e-117
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 402 HPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAI 446
H Q ++N TP ++ P N S P+ Q QY L + Q +
Sbjct: 156 HQQQQNIN-TPPMNINSPNINKSAPQQQQQQYHLLLQQQQQQQQL 199
Score = 55 (24.4 bits), Expect = 3.5e-117, Sum P(9) = 3.5e-117
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
+Q + ++Q++Q QQQ Q+ + + QQ Q ++ Q H Q
Sbjct: 106 QQHAQQQQQLQQQQQQQQQQQQQQQQQQQQQQHQQQHQQQQLQQQQQQHHHQ 157
Score = 55 (24.4 bits), Expect = 9.4e-112, Sum P(6) = 9.4e-112
Identities = 17/106 (16%), Positives = 47/106 (44%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWA 830
QQQ ++ +Q ++ ++ ++Q+ +Q+Q Q ++ QL+ +++ +
Sbjct: 183 QQQYHLLLQQQQQQQQLLQQQQQQQQLQQQQLQQQQLQQQQAQLQQQQAQQQQAQQQQQQ 242
Query: 831 IRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERY 876
+ A+ A+ + + ++ + + ++ KN VE Y
Sbjct: 243 QQQAQQAQQQQQQQQQQQQQQHQQTNMMQQQQQQQVPTKNQHVEVY 288
Score = 54 (24.1 bits), Expect = 2.1e-110, Sum P(6) = 2.1e-110
Identities = 20/127 (15%), Positives = 62/127 (48%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWA 830
QQQQ++ +Q ++ + ++Q+ + Q Q Q+ ++++Q + Q ++ +
Sbjct: 110 QQQQQLQQQQQQQQQQQQQQ-QQQQQQQQHQQQHQQQQLQQQQQQHHHQQQQNINTPPMN 168
Query: 831 IRDA---RTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSI 887
I ++A + +YH + ++ +++ + ++ + L+ +++ + L +QQ +
Sbjct: 169 INSPNINKSAPQQQQQQYHLLLQQQQQQQQLLQQQQQQQQLQQQQLQQ--QQLQQQQAQL 226
Query: 888 PGDAAER 894
A++
Sbjct: 227 QQQQAQQ 233
Score = 53 (23.7 bits), Expect = 7.4e-113, Sum P(7) = 7.4e-113
Identities = 40/155 (25%), Positives = 57/155 (36%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIXXXXXX 256
E + E QPQQQ S Q+ E S+QT Q M A +P Q QQS
Sbjct: 1033 EHLQQPENLQPQPQQQ-SQQQPEQVQSSEQT---QSMQAQQ-QPEQNQPQQQS------- 1080
Query: 257 XXXXXXXXXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVS 316
+ I+ QP NA + L+ S + A S + P+ + VS
Sbjct: 1081 -EQITQQQQSQQDPQQIN-QQP-NA--VPSLVTTPTS--INTPAALVSTVVIPTQVIAVS 1133
Query: 317 KQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPT 351
T+PT G + N ++ +PT
Sbjct: 1134 SVSTTTPTNGGVIATPTNGGIIATQPMVVSQIQPT 1168
Score = 51 (23.0 bits), Expect = 2.5e-114, Sum P(8) = 2.5e-114
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 204 KQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
+ M+Q QQ+ G+ QQ + Q + +++ + QHQQS
Sbjct: 868 QMMQQQLQQIQAPPGQTLN-QQQLIQQQMLHQKLLQQQRLIQHQQS 912
Score = 50 (22.7 bits), Expect = 2.5e-115, Sum P(9) = 2.5e-115
Identities = 32/145 (22%), Positives = 53/145 (36%)
Query: 105 QQHAISQESQNRSQGVEHQLLNPVHXXXXXXXXXXXXKSASVLQSQQQAKLGMLGPASGK 164
QQ Q+ Q + Q HQ ++ KSA QQQ + +L +
Sbjct: 139 QQQHQQQQLQQQQQQHHHQQQQNINTPPMNINSPNINKSAP---QQQQQQYHLLLQQQQQ 195
Query: 165 DQDMRMGNLKMQELIXXXXXXXXXXXXXXXXXEQFGRGEKQMEQPQQQVSDQKGEPKPPS 224
Q + + Q+L +Q + + Q +Q QQQ + Q+ + + +
Sbjct: 196 QQQLLQQQQQQQQL-------QQQQLQQQQLQQQ--QAQLQQQQAQQQQAQQQQQQQQQA 246
Query: 225 QQTLGGQGMAANIIRPMQAAQHQQS 249
QQ Q + Q QHQQ+
Sbjct: 247 QQAQQQQQQQ----QQQQQQQHQQT 267
Score = 49 (22.3 bits), Expect = 2.3e-116, Sum P(9) = 2.3e-116
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 598 PGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQV-SACDAVQVKKPAQAT 656
P ++ QQ P V+S ++ + + Q + + P + + + Q S D Q+ + A
Sbjct: 1045 PQQQSQQQP-EQVQSSEQTQSMQAQQQPEQNQPQQQSEQITQQQQSQQDPQQINQQPNAV 1103
Query: 657 TAL 659
+L
Sbjct: 1104 PSL 1106
Score = 49 (22.3 bits), Expect = 4.0e-114, Sum P(8) = 4.0e-114
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 206 MEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQ-HQQS 249
++QPQ Q + Q+ +P+ +QQT Q + QA Q +QQ+
Sbjct: 915 LQQPQAQQTYQQTQPQ--TQQTQQTQPQTQQTYQQPQAQQTYQQT 957
Score = 48 (22.0 bits), Expect = 3.5e-117, Sum P(9) = 3.5e-117
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 474 FTKHQLHVLKAQILAFR 490
FT+ QL V++AQ+ A++
Sbjct: 608 FTQEQLDVIRAQVYAYK 624
Score = 48 (22.0 bits), Expect = 6.4e-115, Sum P(9) = 6.4e-115
Identities = 40/202 (19%), Positives = 85/202 (42%)
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEXXXXXXXXXXXXX 765
+++L E + + K+S++LK+ N E+ R + L QI
Sbjct: 1267 REVLDAE-ISKSKLKKSKDLKQKLDQQQSNEEKNRFKDFLG---QILNHSKEFKEYHANK 1322
Query: 766 XXEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
++ + + + A Q +K + ER+ E +R ++T+ ++ K LK + Q + + L
Sbjct: 1323 MTKIKKMTKRVTAYFILQEKKEQQQREREERERLRALKTNDES---KYLKLLEQTKNQRL 1379
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
R+ N + K + +E ++ + N+ EA++ R ++ LL QQ
Sbjct: 1380 ------RELFDQTNEFLDKISHLLQKEKISIQEKEENE--EAIR-----RQQDQLLLQQK 1426
Query: 886 SIPGDAAERYAVLSSFLTQTEE 907
G+ + + S + T +
Sbjct: 1427 EKEGEEDAKQSEKISIMNITND 1448
Score = 48 (22.0 bits), Expect = 4.3e-113, Sum P(8) = 4.3e-113
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 541 DQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG-QGMSAVTKEPAPVVVP 598
D +H + N K+ Q ++ + K GDD ++ V + +S T E + P
Sbjct: 1596 DSGQHTDKNSKEIQEKKDNDNKDQSKATTIDGDDNSSNIKVDDKSISTTTTETSTAPPP 1654
Score = 47 (21.6 bits), Expect = 8.1e-115, Sum P(9) = 8.1e-115
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQ 247
++Q +Q QQQ Q+ + + QQ Q + Q QHQ
Sbjct: 499 QQQQQQQQQQQQQQQQQQQQQQQQQQHQQQHQHQQNQQFQQPQHQ 543
Score = 47 (21.6 bits), Expect = 6.4e-111, Sum P(6) = 6.4e-111
Identities = 22/134 (16%), Positives = 60/134 (44%)
Query: 780 PDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARN 839
P +Q +++ L ++Q+ +Q Q Q+ +++QL+ Q +++ L+ A + A+
Sbjct: 179 PQQQQQQYHLLLQQQQ----QQQQLLQQQQQQQQLQQ-QQLQQQQLQQQQAQLQQQQAQQ 233
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAV-L 898
+ A+ ++ ++ + + + ++ + + + + +QQ E Y V +
Sbjct: 234 QQ-AQQQQQQQQQAQQAQQQQQQQQQQQQQQHQQTNMMQQQQQQQVPTKNQHVEVYVVSV 292
Query: 899 SSFLTQTEEYLYKL 912
+ + YL L
Sbjct: 293 FHYFYYYQRYLDNL 306
Score = 46 (21.3 bits), Expect = 2.9e-116, Sum P(9) = 2.9e-116
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
+Q+ + ++Q Q QQQ + + QQ Q + Q QHQQ
Sbjct: 90 QQYQQAQQQ-HQAQQQAQQHAQQQQQLQQQQQQQQQQQQQQQQQQQQQQHQQ 140
Score = 46 (21.3 bits), Expect = 8.1e-114, Sum P(8) = 8.1e-114
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
Q QPQ Q + Q +P +QQT Q A + Q AQ Q
Sbjct: 925 QQTQPQTQQTQQT---QPQTQQTYQ-QPQAQQTYQQTQQAQQTQ 964
Score = 45 (20.9 bits), Expect = 1.5e-114, Sum P(8) = 1.5e-114
Identities = 28/148 (18%), Positives = 46/148 (31%)
Query: 105 QQHAISQESQNRSQGVEHQLLNPVHXXXXXXXXXXXXKSASVLQSQQQAKLGMLGPASGK 164
QQ Q+ Q Q Q L P + Q QQQ ++ +
Sbjct: 388 QQQQQQQQQQQSPQQQPQQFLQPQQQYHQHHQQHQQHQHQQQPQ-QQQPQIQQQQQQAAY 446
Query: 165 DQDMRMGNLKMQELIXXXXXXXXXXXXXXXXXEQFGRGEKQMEQP---QQQVSDQKGEPK 221
+ ++ +K Q+ ++ M+Q QQQ Q+ + +
Sbjct: 447 EAQLKQQQMKHQQQQHLQHQQNMNVTSPNMTSPNIPSTQQLMQQQLLLQQQQQQQQQQQQ 506
Query: 222 PPSQQTLGGQGMAANIIRPMQAAQHQQS 249
QQ Q + Q QHQQ+
Sbjct: 507 QQQQQQQQQQQQQQQQQQHQQQHQHQQN 534
Score = 44 (20.5 bits), Expect = 4.0e-115, Sum P(9) = 4.0e-115
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ 813
QQQ + P +QY + + + Q+ + +Q Q Q ++++Q
Sbjct: 401 QQQPQQFLQPQQQYHQHHQ--QHQQHQHQQQPQQQQPQIQQQQ 441
Score = 44 (20.5 bits), Expect = 1.3e-114, Sum P(10) = 1.3e-114
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
+Q + + Q + QQQ+ Q+ + QQ + M N ++A QQ
Sbjct: 131 QQQQQQQHQQQHQQQQLQQQQQQHHHQQQQNINTPPMNINSPNINKSAPQQQ 182
Score = 44 (20.5 bits), Expect = 1.7e-114, Sum P(9) = 1.7e-114
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 206 MEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
++Q QQQ Q+ + + P QQ Q + Q Q QQS
Sbjct: 360 VQQQQQQQQQQQQQQQQPQQQ----QHQPQTQQQQQQQQQQQQS 399
Score = 43 (20.2 bits), Expect = 7.5e-115, Sum P(8) = 7.5e-115
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ 813
++ QQQ ++ +Q + + ++Q+ + +Q Q Q+ +++Q
Sbjct: 218 QLQQQQAQLQQQQAQQQQAQQQQQQQQQAQQAQQQQQQQQQQQQQQ 263
Score = 43 (20.2 bits), Expect = 2.5e-114, Sum P(8) = 2.5e-114
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 395 GNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSA 445
G G P+ S NM ++Q + + + Q Q Q + + Q A
Sbjct: 59 GGGNATEEKPKPSYNMPLSIEQQIQNQMMQSQQYQQAQQQHQAQQQAQQHA 109
Score = 42 (19.8 bits), Expect = 4.4e-117, Sum P(9) = 4.4e-117
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 416 QPLPVKNSSGPENSQMQYLRQLNRSSPQ 443
Q P + P+ Q Q +Q + SPQ
Sbjct: 374 QQQPQQQQHQPQTQQQQQQQQQQQQSPQ 401
Score = 42 (19.8 bits), Expect = 1.8e-112, Sum P(8) = 1.8e-112
Identities = 13/64 (20%), Positives = 31/64 (48%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQT-SQKAMREKQLKSISQWRKKLLEAHW 829
QQQQE + P+ + + ++Q ++ QT S +A ++ + Q +++ +
Sbjct: 1029 QQQQEHLQQPENLQPQPQQQSQQQPEQVQSSEQTQSMQAQQQPEQNQPQQQSEQITQQQQ 1088
Query: 830 AIRD 833
+ +D
Sbjct: 1089 SQQD 1092
Score = 41 (19.5 bits), Expect = 4.0e-115, Sum P(9) = 4.0e-115
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 600 KEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTAL 659
+++QQ + + Q+++ L+ QQ A + A Q A Q ++ AQ
Sbjct: 193 QQQQQQLLQQQQQQQQLQQQQLQQQQLQQQQAQLQQQQAQQQQAQQQQQQQQQAQQAQQQ 252
Query: 660 QPKDVGAARKYH 671
Q + ++ H
Sbjct: 253 QQQQQQQQQQQH 264
Score = 41 (19.5 bits), Expect = 3.4e-114, Sum P(9) = 3.4e-114
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 204 KQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
+Q +Q QQQ Q+ + + QQ Q + Q Q QQ
Sbjct: 495 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQHQHQQNQQFQQ 539
Score = 41 (19.5 bits), Expect = 1.8e-112, Sum P(8) = 1.8e-112
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQ 247
+ Q QPQ Q + Q+ + + QQT Q + Q Q Q
Sbjct: 933 QTQQTQPQTQQTYQQPQAQQTYQQTQQAQQTQQTQPQTQQQTQPQ 977
Score = 41 (19.5 bits), Expect = 1.2e-111, Sum P(8) = 1.2e-111
Identities = 10/51 (19%), Positives = 28/51 (54%)
Query: 772 QQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRK 822
QQQ ++ +Q ++ + ++Q+ + +Q Q Q+ ++ Q + Q+++
Sbjct: 489 QQQLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQHQHQQNQQFQQ 539
Score = 40 (19.1 bits), Expect = 3.5e-117, Sum P(9) = 3.5e-117
Identities = 33/171 (19%), Positives = 55/171 (32%)
Query: 1614 SNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQXXXXXXXXXX 1673
+N+ V + KR Y + ++ DD+ E E D + PV+
Sbjct: 2407 NNVSVVATTPSRTNKRKELESNYSDEEDDDDDADEEDEEDEDFQR--PVRSKKRAKVAAS 2464
Query: 1674 XXXYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLT 1733
+ + K S G GG D S N+ + + + +
Sbjct: 2465 KKPSASSKKQEKEKKANSNGGGGGGGGGDD----SSNSNPSTPLTPSSSSSSSITAQ--P 2518
Query: 1734 QIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSG 1784
+ SP SP K A RP K+ E E+ + + D + G
Sbjct: 2519 PLPSP-SPVK----KAGRGRPAGTMKKKISENEQKYLQIWDAIRADQDEEG 2564
Score = 40 (19.1 bits), Expect = 1.8e-116, Sum P(9) = 1.8e-116
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 104 AQQHAISQESQNRSQGVEHQLLN 126
AQQ Q+ Q + Q +HQ N
Sbjct: 246 AQQAQQQQQQQQQQQQQQHQQTN 268
Score = 40 (19.1 bits), Expect = 1.2e-115, Sum P(9) = 1.2e-115
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 203 EKQMEQPQQ-QVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
+ QM Q QQ Q + Q+ + + +QQ Q + Q Q QQ
Sbjct: 83 QNQMMQSQQYQQAQQQHQAQQQAQQHAQQQQQLQQQQQQQQQQQQQQ 129
Score = 40 (19.1 bits), Expect = 2.0e-115, Sum P(9) = 2.0e-115
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++QQQ M ++ + RL + Q+ +L++Q Q Q
Sbjct: 885 LNQQQLIQQQMLHQKLLQQQRLIQHQQSQLLQQPQAQQ 922
Score = 39 (18.8 bits), Expect = 3.5e-117, Sum P(9) = 3.5e-117
Identities = 16/114 (14%), Positives = 45/114 (39%)
Query: 1763 DELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQ--VLQPKIKRKRSIRVRPRHTVERP 1820
D++ + ++ +S H D S + E Q + Q +++ + +P+ ++
Sbjct: 2677 DQIVKDQLDIS--EHQDKSNSADQSSTTSTIEQSQPTITQQSPQQQPQQQPQPQQQQQQQ 2734
Query: 1821 EERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 1874
+++ + ++ +D T T++ + + N + S P+S
Sbjct: 2735 QQQQQQQQQKPQQQQAIQSPNVDKNNSTTTTTSTKLLNNSKGNHNNNSLSPPAS 2788
Score = 39 (18.8 bits), Expect = 4.3e-114, Sum P(10) = 4.3e-114
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRP 240
+Q + ++Q +Q QQQ Q + + QQ NI P
Sbjct: 122 QQQQQQQQQQQQQQQQHQQQHQQQQLQQQQQQHHHQQQQNINTP 165
Score = 39 (18.8 bits), Expect = 5.4e-114, Sum P(9) = 5.4e-114
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 684 HDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSEN 724
+D+ +T +S+ ++ + D + E+ +KK ++N
Sbjct: 1576 NDNTTTTTSASSNTDVIMKNDSGQHTDKNSKEIQEKKDNDN 1616
Score = 39 (18.8 bits), Expect = 2.1e-111, Sum P(7) = 2.1e-111
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 222 PPSQQTLGGQGMAANIIRPMQAAQHQQSI 250
P + + Q M + I+P Q Q QQ I
Sbjct: 1149 PTNGGIIATQPMVVSQIQPTQQQQQQQII 1177
Score = 39 (18.8 bits), Expect = 5.7e-109, Sum P(5) = 5.7e-109
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCE-----RQRVELMRQVQTSQKAMREKQLKSISQWRKK 823
++QQ Q M M +QY++ + + +Q + +Q+Q Q+ +++Q + Q +++
Sbjct: 78 IEQQIQNQM-MQSQQYQQAQQQHQAQQQAQQHAQQQQQLQQQQQQQQQQQQQQQQQQQQQ 136
Score = 39 (18.8 bits), Expect = 7.7e-109, Sum P(6) = 7.7e-109
Identities = 11/53 (20%), Positives = 29/53 (54%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKK 823
QQQ + A +Q ++ + ++Q+ + +Q Q Q+ ++ Q + + Q +++
Sbjct: 102 QQQAQQHAQQQQQLQQQQQQ-QQQQQQQQQQQQQQQQHQQQHQQQQLQQQQQQ 153
Score = 38 (18.4 bits), Expect = 4.4e-117, Sum P(9) = 4.4e-117
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 1843 DNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 1879
+N Y + + + + H + +P+ K R N
Sbjct: 3185 NNNYNSNHNNNNQYQHHSYQQQQHQQRHQPNKKQRFN 3221
Score = 38 (18.4 bits), Expect = 7.0e-117, Sum P(9) = 7.0e-117
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 1775 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 1808
+S+ ++ D ++ EDE +P +KR+
Sbjct: 2426 ESNYSDEEDDDDDADEEDEEDEDFQRPVRSKKRA 2459
Score = 38 (18.4 bits), Expect = 8.1e-115, Sum P(9) = 8.1e-115
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 601 EEQQAPVSSVKSDQEVECGLLRTQQQSDFP 630
++QQ + Q + +++ QQQ P
Sbjct: 250 QQQQQQQQQQQQQQHQQTNMMQQQQQQQVP 279
Score = 38 (18.4 bits), Expect = 1.5e-114, Sum P(8) = 1.5e-114
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 463 LATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQE 502
L Q QQ+L + Q L+ Q L ++L++ + L Q+
Sbjct: 190 LQQQQQQQQLLQQQQQQQQLQQQQLQQQQLQQQQAQLQQQ 229
Score = 38 (18.4 bits), Expect = 6.9e-114, Sum P(9) = 6.9e-114
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQ 226
+Q + ++Q +Q QQQ Q+ +QQ
Sbjct: 507 QQQQQQQQQQQQQQQQQQHQQQHQHQQNQQ 536
Score = 37 (18.1 bits), Expect = 3.7e-116, Sum P(9) = 3.7e-116
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 104 AQQHAISQESQNRSQGVEHQ 123
AQQHA Q+ + Q + Q
Sbjct: 105 AQQHAQQQQQLQQQQQQQQQ 124
Score = 37 (18.1 bits), Expect = 1.9e-111, Sum P(6) = 1.9e-111
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQ 819
QQQ + + ++ +L ++Q+ + +Q Q Q+ +++ + Q
Sbjct: 96 QQQHQAQQQAQQHAQQQQQLQQQQQQQQQQQQQQQQQQQQQQHQQQHQQ 144
Score = 37 (18.1 bits), Expect = 3.1e-111, Sum P(8) = 3.1e-111
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
QQQQ+ +Q ++ + + + + +Q Q Q+ ++Q + Q +++ + H
Sbjct: 361 QQQQQQQQQQQQQQQQPQQQQHQPQTQQQQQQQQQQQQSPQQQPQQFLQPQQQYHQHH 418
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 1071 (382.1 bits), Expect = 8.1e-117, Sum P(3) = 8.1e-117
Identities = 249/628 (39%), Positives = 364/628 (57%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY +AH + E++ +QPS+L GTL++YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 447 YYEVAHRIKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSI 506
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
+LI YL E K + GP L+IVP + + NW E KW PS++ I Y G +QR L ++
Sbjct: 507 SLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSL-QHQIR 565
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLL 1156
F+VL+TTYE+I+ D+S LSK DW ++IIDE RMK+ +S L+ + Y R + RL+L
Sbjct: 566 VGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLIL 625
Query: 1157 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN+ P++F++ K F DWF+ PF G + L E+ ++I
Sbjct: 626 TGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLE---LTEEETLLI 682
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV V++C++S +Q +Y + L V E
Sbjct: 683 IRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTE 742
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-----NYPYFSDLSKDFLVKSCGKLW 1331
K I K LNN+ M+LRK CNHP + S + D L + GK
Sbjct: 743 G--ATKGGI------KGLNNKIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFE 794
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
+LDR+L K + +GHRVL+F MT+++DI+E++L+ + L Y R+DG+T E+R + FN
Sbjct: 795 LLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFN 854
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
+ DSD F FLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQK EV+++
Sbjct: 855 APDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 914
Query: 1452 M---EAVVDKISSH--QKED---ELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKI 1503
+ ++V + I QK D ++ G D + ++ ++ + N K
Sbjct: 915 LITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRRLIESETNRDDDDKA 974
Query: 1504 DMADEVIN---AGRFDQRTTHEE---RRMTLETLLHDEERYQETVHDVPSLQEVNRMIAR 1557
++ D+ +N A D++ ++ RM E + + + L E+ ++
Sbjct: 975 ELDDDELNDTLARSADEKILFDKIDKERMNQERADAKAQGLRVPPPRLIQLDELPKVFR- 1033
Query: 1558 SEDEVELFDQMDEE-FGWIEEMTR--YD 1582
ED E F + D E G I + R YD
Sbjct: 1034 -EDIEEHFKKEDSEPLGRIRQKKRVYYD 1060
Score = 87 (35.7 bits), Expect = 8.1e-117, Sum P(3) = 8.1e-117
Identities = 24/94 (25%), Positives = 50/94 (53%)
Query: 788 VRLCER-QRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYH 846
VRL E +R +L+ + + ++ + +++ SI + K+ W+ ++ R A H
Sbjct: 301 VRLAEELERQQLLEK-RKKERNLHLQKINSIIDFIKERQSEQWSRQERCFQFGRLGASLH 359
Query: 847 ERILREFSKRKDDDRNKRMEALKNNDVERYREML 880
++ ++ KR + +R+ ALK+ND E Y ++L
Sbjct: 360 NQMEKDEQKRIERTAKQRLAALKSNDEEAYLKLL 393
Score = 55 (24.4 bits), Expect = 1.9e-113, Sum P(3) = 1.9e-113
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 666 AARKYHG-P-LFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSE 723
A++ +H P L D PF SV + V + LA ++L ++ LE +K+R+
Sbjct: 266 ASQAHHNIPYLRDSPFTAAAQRSVQIRSKVIVPQTVRLA---EELERQQLLEKRKKERNL 322
Query: 724 NLKKISGILAVNLERK 739
+L+KI+ I+ ER+
Sbjct: 323 HLQKINSIIDFIKERQ 338
Score = 54 (24.1 bits), Expect = 8.1e-117, Sum P(3) = 8.1e-117
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 1794 EDEQVLQPKIKRKRSIRVRPR---HTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQL 1850
+D L+ IK++R R R R + + E + +TP ++SL+ +N + A +
Sbjct: 1074 DDNMSLEDAIKKRREARERRRLRQNGTKENEIETLENTP-EASETSLIE---NNSFTAAV 1129
Query: 1851 RTDTEMKAHGESNSLRHDQSEPSSKSRRNL 1880
D E A E+ + R + SS+ +R +
Sbjct: 1130 --DEETNADKETTASRSKRR--SSRKKRTI 1155
Score = 39 (18.8 bits), Expect = 9.1e-112, Sum P(3) = 9.1e-112
Identities = 19/97 (19%), Positives = 46/97 (47%)
Query: 796 VELMR-QVQTSQKAMREKQLKSI-SQWRKK---LLEAHWAIRDARTA--RNRGVAKYHER 848
VEL ++ T QK++R+K + ++ SQ L ++ + R+ R++ + R
Sbjct: 243 VELKSLKLLTKQKSIRQKLINNVASQAHHNIPYLRDSPFTAAAQRSVQIRSKVIVPQTVR 302
Query: 849 ILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
+ E +++ ++ K+ L + + + E+Q+
Sbjct: 303 LAEELERQQLLEKRKKERNLHLQKINSIIDFIKERQS 339
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 1049 (374.3 bits), Expect = 4.8e-116, Sum P(6) = 4.8e-116
Identities = 237/610 (38%), Positives = 362/610 (59%)
Query: 856 RKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLG-- 913
R+ D +NKR++ + + + + ++Q A ER L + E Y+ L
Sbjct: 618 RRQDKKNKRLK-FGHRLIATHTNLERDEQKRAEKKAKERLQALKA--NDEEAYIKLLDQT 674
Query: 914 --SKITXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEV----MI-RNRFLEM 966
++IT + Q ++E + S A EEV M+ + + E
Sbjct: 675 KDTRITHLLRQTNAFLDSLTRAVKDQ-QKYTKEMIDSHIKEASEEVDDLSMVPKMKDEEY 733
Query: 967 NAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILAD 1026
+ D S+V+ YY++AH + E + +QPS+L GTL+DYQI GLQWM+SL+NN LNGILAD
Sbjct: 734 DDDDDNSNVD-YYNVAHRIKEDIKKQPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILAD 792
Query: 1027 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKD 1086
EMGLGKT+Q ++L+ YL E K GP+L+IVP + L NW SE KW P++ I + G+ +
Sbjct: 793 EMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPN 852
Query: 1087 QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146
+R + ++ A +F+V++TT+E+I+ +R+ LSKV W ++IIDE RMK+ +S L+ L+
Sbjct: 853 ER-KAKQAKIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLN 911
Query: 1147 -RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADD 1205
Y RL+LTGTPLQN+ P++F++ K+F +WF+ PF G D
Sbjct: 912 THYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTG---GQDK 968
Query: 1206 DWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKA 1265
L E+ +++I RLH++L PF+LRR +DVE LP KV V++C+MSA+Q +Y +
Sbjct: 969 IELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLK 1028
Query: 1266 TGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS-----K 1320
L + ++ K+ V + NN+ M+L+K CNHP + ++
Sbjct: 1029 YRRLFIGDQNNKKMVG---------LRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETN 1079
Query: 1321 DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1380
D + + GK +LDRIL KL+ TGHRVL+F MT+++DI+E++L++ + Y R+DG T
Sbjct: 1080 DDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKS 1139
Query: 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR 1440
++R + FN+ DS+ F+LS RA G GLNLQ+ADTVII+D D NP + QA RAHR
Sbjct: 1140 DERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHR 1199
Query: 1441 IGQKREVKVI 1450
IGQK EV+++
Sbjct: 1200 IGQKNEVRIL 1209
Score = 122 (48.0 bits), Expect = 4.8e-116, Sum P(6) = 4.8e-116
Identities = 32/95 (33%), Positives = 58/95 (61%)
Query: 1489 SIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLH-DEERYQET---VHD 1544
S+E +I + K+D+ +VI AG+FD ++T EE+ L +LL +EER ++ V +
Sbjct: 1216 SVEEVILERAYK-KLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRESGVEE 1274
Query: 1545 VPSLQ--EVNRMIARSEDEVELFDQMDEEFGWIEE 1577
L+ E+N ++AR+++E+ + +MDE+ EE
Sbjct: 1275 EEELKDSEINEILARNDEEMAVLTRMDEDRSKKEE 1309
Score = 64 (27.6 bits), Expect = 4.8e-116, Sum P(6) = 4.8e-116
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 846 HERILREFSKRKDDDRNKRMEALKNNDVERYREML 880
H + R+ KR + +R++ALK ND E Y ++L
Sbjct: 637 HTNLERDEQKRAEKKAKERLQALKANDEEAYIKLL 671
Score = 58 (25.5 bits), Expect = 4.8e-116, Sum P(6) = 4.8e-116
Identities = 38/156 (24%), Positives = 56/156 (35%)
Query: 1744 FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKI 1803
+ A E + + + M +E + VS D D Q T D+ E +I
Sbjct: 1346 YNGRGARERKTATYNDNMSEEQWLRQFEVSDDEKNDKQARKQRTKKEDKSEAIDG-NGEI 1404
Query: 1804 KRKR--SIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGE 1861
K + + PR E+R+ DT L D L + P ++K G
Sbjct: 1405 KGENIDADNDGPRINNISAEDRA--DTDLAMNDDDFLSKKRKAGRPRG--RPKKVKLEGS 1460
Query: 1862 SNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKT 1897
NS E S + N PS + PK R + KT
Sbjct: 1461 ENS-EPPALESSPVTGDNSPSEDFMDIPKPRTAGKT 1495
Score = 53 (23.7 bits), Expect = 4.8e-116, Sum P(6) = 4.8e-116
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 422 NSSGPENSQMQYLRQLNRSSPQSAIPXXXXXXXXXXXXQGGLATQMPQQRLGFTKHQLHV 481
NS P+ +QMQ Q Q A QG ++P FT Q +
Sbjct: 202 NSPMPQQAQMQQA-QFQAQQAQQAQQAQQAQQAQARLQQG---RRLPMTM--FTAEQSEL 255
Query: 482 LKAQILAFRRL 492
LKAQI + + L
Sbjct: 256 LKAQITSLKCL 266
Score = 49 (22.3 bits), Expect = 4.8e-116, Sum P(6) = 4.8e-116
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 272 NIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVT--SPTIA--G 327
N+ L+ S A PIMQ+++ N +N N P V T SPT A G
Sbjct: 99 NMQLNGNETFSTSAHQSPIMQTQMPLN--SNGGNNMLPQRQSSVGSLNATNFSPTPANNG 156
Query: 328 ENS 330
EN+
Sbjct: 157 ENA 159
Score = 40 (19.1 bits), Expect = 4.2e-115, Sum P(6) = 4.2e-115
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 299 HKANESNMGAPSSP 312
H NE M APS P
Sbjct: 22 HLRNEHGMNAPSVP 35
Score = 39 (18.8 bits), Expect = 2.3e-113, Sum P(5) = 2.3e-113
Identities = 19/75 (25%), Positives = 29/75 (38%)
Query: 105 QQHAISQESQNRSQGVEHQLLNPVHXXXXXXXXXXXXKSASVLQSQQQAKLGMLGPASGK 164
Q+H I Q+S N G Q+ +P+ + A Q QQA+ G+
Sbjct: 186 QEHNI-QDS-NVMPG--SQINSPMPQQAQMQQAQFQAQQAQQAQQAQQAQQAQARLQQGR 241
Query: 165 DQDMRMGNLKMQELI 179
M M + EL+
Sbjct: 242 RLPMTMFTAEQSELL 256
Score = 38 (18.4 bits), Expect = 3.0e-113, Sum P(5) = 3.0e-113
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
E ++ Q P P Q Q A + QA Q QQ+
Sbjct: 187 EHNIQDSNVMPGSQINSPMPQQAQMQQAQFQAQQAQQAQQAQQAQQA 233
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 1183 (421.5 bits), Expect = 3.0e-115, Sum P(3) = 3.0e-115
Identities = 303/796 (38%), Positives = 449/796 (56%)
Query: 799 MRQVQTSQKAMREKQLKSISQWRKKL---LEAHWAIRDARTARNRGVAKYHERILREFSK 855
++Q++ ++ M+E++ + I + +K+ LE H + R K R +EF K
Sbjct: 565 IKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHK 624
Query: 856 RKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSK 915
RK+ ++++ ++ + + +E + DA + L +TE+YL KLGSK
Sbjct: 625 RKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDR--VKQLLKETEKYLQKLGSK 682
Query: 916 ITXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSV 975
+ R + +E R++ A +E +I N A S
Sbjct: 683 LKEAKLLTS------------RFEN-EADETRTSNA-TDDETLIENEDESDQAKHYLESN 728
Query: 976 NKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQ 1035
KYY +AH++ E + QPS L G LR+YQ+ GL+W++SLYNN LNGILADEMGLGKTVQ
Sbjct: 729 EKYYLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQ 788
Query: 1036 VMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE 1095
V++LI YLME K + GP L++VP++VL W+SE++ W PS+ I Y G D+R +LF ++
Sbjct: 789 VISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQ 848
Query: 1096 VAALKFNVLVTTYEFIM--YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR 1153
+ KFNVL+TTYE++M +DR KLSK+ W YIIIDE R+K+ L DL Y R
Sbjct: 849 IVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHR 908
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN+ P +F++ + F WF++PFQ G + +A++ L E+
Sbjct: 909 LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGES-SAEEALLSEEEN 967
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II+RLHQ+L PF+LRR VE LP K+ ++RC SA Q + +K RV
Sbjct: 968 LLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLL---MK-----RV-- 1017
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDFL---VKS 1326
ED I AK + ++N MELR CNHP L+ + +++ K FL V+
Sbjct: 1018 EDNL-----GSIGNAKS-RAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRL 1071
Query: 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386
CGKL +LDR+L KL+ T HRVL FSTMT+LLD++E+YL + Y R+DG TS DR +
Sbjct: 1072 CGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGAL 1131
Query: 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446
I FN S FIFLLSIRA G G+NLQ+ADTVI++D D NP+ + QA ARAHRIGQK++
Sbjct: 1132 IDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKD 1191
Query: 1447 VKVIYMEAV--VD---KISSHQKEDELRSGGTVDLEDD-LAGKDRYIGSIEGLIRNNIQQ 1500
V V+ E V V+ + S+ K T D+ + +DR +E L+R + ++
Sbjct: 1192 VLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRK-EYLESLLRESKKE 1250
Query: 1501 YKIDMADE-VIN---AGR------FDQ--RTTHEERRMTLETLLHDEERYQETVHDVPSL 1548
+ D+ +N A R F+ + E T TL+H ++ +PS+
Sbjct: 1251 EDAPVLDDDALNDLIARRESEIDIFESIDKQRKENEMETWNTLVHGPG--SDSFAHIPSI 1308
Query: 1549 QEVNRMIARSEDEVEL 1564
+R++ +ED+++L
Sbjct: 1309 P--SRLV--TEDDLKL 1320
Score = 130 (50.8 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 30/97 (30%), Positives = 60/97 (61%)
Query: 1477 EDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1536
+D L + + S+E +R + + +K+ +A++ I AG FD T+ E+R+ LE+LL + +
Sbjct: 1190 KDVLVLRFETVNSVEEQVRASAE-HKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESK 1248
Query: 1537 RYQETVHDVPSLQE--VNRMIARSEDEVELFDQMDEE 1571
+ + D P L + +N +IAR E E+++F+ +D++
Sbjct: 1249 KEE----DAPVLDDDALNDLIARRESEIDIFESIDKQ 1281
Score = 105 (42.0 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 36/131 (27%), Positives = 68/131 (51%)
Query: 789 RLCERQRVELMRQVQTSQKAMREKQLKSIS--QWRKKLLEAHWAIRDARTAR-NRGVAKY 845
R+ + ++ E + + Q+ +RE+Q + + K+ LE + +R R NR ++
Sbjct: 564 RIKQLEKYE-QKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEF 622
Query: 846 HERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQT 905
H+R R ++ D + +++ LK NDVE Y M+ + ++ +R + L +T
Sbjct: 623 HKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKS-------DR---VKQLLKET 672
Query: 906 EEYLYKLGSKI 916
E+YL KLGSK+
Sbjct: 673 EKYLQKLGSKL 683
Score = 51 (23.0 bits), Expect = 3.0e-115, Sum P(3) = 3.0e-115
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 1861 ESNSLRHDQSEPSSKSRRNLP 1881
E++ L+H EPS+ +R N+P
Sbjct: 1882 ETSLLKHKVGEPSATTRTNVP 1902
Score = 47 (21.6 bits), Expect = 3.0e-115, Sum P(3) = 3.0e-115
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQEL 503
F + QL L+AQ L F L+ G +P++L
Sbjct: 279 FREQQLKQLRAQCLVFLALRNG--LVPKKL 306
Score = 43 (20.2 bits), Expect = 2.1e-114, Sum P(3) = 2.1e-114
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 1736 VSPVSPQKFGSLSALEARPGSLSKRMP--DELEEGEIAVSGDSHMDHQQ--SGSWTHDRD 1791
++P K G+LS +A+ +++K P + +I SG + ++ SG+ R
Sbjct: 1805 LTPQIEVKVGNLSGTKAKFDAVAKEQPHFSQSVAPDIHSSGSLSQEIRRDTSGTGGSARK 1864
Query: 1792 EGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTP 1829
+ D + +K S +H V P + T+ P
Sbjct: 1865 QTADVTDVARVMKEIFSETSLLKHKVGEPSATTRTNVP 1902
Score = 41 (19.5 bits), Expect = 3.4e-114, Sum P(3) = 3.4e-114
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 1872 PSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGS-SN 1930
P+ + RNLPSR PK R + G+ + + + K+ N SG+ +
Sbjct: 1766 PAKRRVRNLPSR--GETPK-RQGKRRGQPLPATDASSARSTGLTPQIEVKVGNLSGTKAK 1822
Query: 1931 FSA 1933
F A
Sbjct: 1823 FDA 1825
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 1100 (392.3 bits), Expect = 5.4e-115, Sum P(4) = 5.4e-115
Identities = 274/694 (39%), Positives = 396/694 (57%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YYS+AH ++E+V+ Q S++ GTL++YQI GL+W++SLYNN LNGILADEMGLGKT+Q +
Sbjct: 750 YYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 809
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
+L+ YLM+ K GP+LIIVP + L NW E KW P+V + Y G+ R RL ++
Sbjct: 810 SLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGR-RLLQNQMR 868
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLL 1156
A KFNVL+TTYE+++ D++ L+K+ WKY+IIDE RMK+ L + L+ Y RLLL
Sbjct: 869 ATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLL 928
Query: 1157 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN P +F + F WF+ PF G L E+ ++I
Sbjct: 929 TGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVE-----LNEEETILI 983
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV +++C MSA+Q +Y +++ G L D E
Sbjct: 984 IRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGS-E 1042
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD-----------LSKDFLVK 1325
K + K K L N ++LRK CNHP + + + + +S L +
Sbjct: 1043 KGKHGKGGA------KALMNTIVQLRKLCNHPFM-FQHIEEKYCDHTGGHGVVSGPDLYR 1095
Query: 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385
GK +LDRIL KL+ T HRVLLF MT+ + I+E+YL WRQ Y R+DGTT EDR
Sbjct: 1096 VSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGE 1155
Query: 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445
+ FN+ SD F+FLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+
Sbjct: 1156 LLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRN 1215
Query: 1446 EVKVIYM---EAVVDKI--SSHQK---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNN 1497
EV+V+ + +V ++I ++ K ++++ G D + + + +++ +I N
Sbjct: 1216 EVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNE 1275
Query: 1498 IQQYKIDMADEVINAGRFDQRTTHE-E--RRMTLETLLHDEERYQETVHDVPSLQEVNRM 1554
++ DE+IN R+ E E +RM E DEE +H P + R+
Sbjct: 1276 EEEENEVPDDEMINM--MIARSEEEIEIFKRMDAERKKEDEE-----IH--PGRE---RL 1323
Query: 1555 IARSEDEVELFDQMDEEFGWIEEMT-RYDQVPKWLRAST--KEVNATIANLSKKPSKNIL 1611
I DE EL D + ++ +E +YD+ R S KEV+ T + K+ K I
Sbjct: 1324 I----DESELPDWLTKDDDEVERFHYQYDEDTILGRGSRQRKEVDYTDSLTEKEWLKAID 1379
Query: 1612 FGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDE 1645
G+ + E +++RKR +K N KE D+
Sbjct: 1380 DGAEFDEEEEEDDSKRKR----RKRKNRKEESDD 1409
Score = 97 (39.2 bits), Expect = 5.4e-115, Sum P(4) = 5.4e-115
Identities = 37/123 (30%), Positives = 63/123 (51%)
Query: 794 QRVELMRQVQTSQKAMREKQLK---SISQWRKKLLEAHWAIRDARTAR-NRGVAKYHERI 849
+++E ++++ +K R+K L+ ++ Q K L E H A+ AR N+ V +H
Sbjct: 495 EKLEKQQKLEAERKR-RQKHLEFLAAVLQHGKDLREFH-RNNKAQLARMNKAVMNHHANA 552
Query: 850 LREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYL 909
RE K ++ +RM L D E YR+ L++Q+ +R A L L+QT+EY+
Sbjct: 553 EREQKKEQERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAFL---LSQTDEYI 602
Query: 910 YKL 912
L
Sbjct: 603 SNL 605
Score = 54 (24.1 bits), Expect = 5.4e-115, Sum P(4) = 5.4e-115
Identities = 28/110 (25%), Positives = 44/110 (40%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAI 446
P+ P +G+PP P Q + ++PG P PE S + L L R+ S
Sbjct: 97 PNMSPYQT-HGMPPNAPTQPCI-VSPGG----PPGGPPPPERSSQENLHALQRAI-DSME 149
Query: 447 PXXXXXXXXXXXXQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGE 496
AT Q G +Q+++L+ QI A+R L + +
Sbjct: 150 EKGLQEDPRYSQLLAMRATSKHQHLNG---NQVNLLRTQITAYRLLARNK 196
Score = 51 (23.0 bits), Expect = 1.1e-114, Sum P(4) = 1.1e-114
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 202 GEK-QMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
G+K Q+ P + Q+G+P PP +GG P Q Q Q
Sbjct: 273 GQKMQVAPPPPHM--QQGQPLPPQPPQVGGPPPIQQQQPPQQQQQQSQ 318
Score = 49 (22.3 bits), Expect = 1.8e-114, Sum P(4) = 1.8e-114
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 373 SLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPP 404
++ + HG P+ QP + G PP PP
Sbjct: 98 NMSPYQTHGMPPNAPT-QPCIVSPGGPPGGPP 128
Score = 49 (22.3 bits), Expect = 1.8e-114, Sum P(4) = 1.8e-114
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 205 QMEQPQQQVSDQKGEPKP-PSQQTL--GGQGMA 234
Q +QP QQ Q P P P Q L GG+ ++
Sbjct: 305 QQQQPPQQQQQQSQPPPPEPHQHQLPNGGKPLS 337
Score = 47 (21.6 bits), Expect = 3.0e-114, Sum P(4) = 3.0e-114
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 379 VHGRDNQVPSRQP-VAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQ 432
V G+ QV P + G LPP PPQ V P P++ P+ Q Q
Sbjct: 271 VPGQKMQVAPPPPHMQQGQPLPP-QPPQ--------VGGPPPIQQQQPPQQQQQQ 316
Score = 46 (21.3 bits), Expect = 3.8e-114, Sum P(4) = 3.8e-114
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 400 PIHPPQTSLNMTPGVDQPLPVKNSSGP 426
P+ PPQ M P P P +S P
Sbjct: 10 PMPPPQAPSPMAPPSQSPAPSPHSPYP 36
Score = 42 (19.8 bits), Expect = 5.4e-115, Sum P(4) = 5.4e-115
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 1594 EVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDE 1645
++N ++A+ P+++ SN V SG T +K+ + + Y DD+
Sbjct: 1587 KLNKSLASAPATPTQS---SSN--VSSGAATTSKKQTRRKRSQKKYTISDDD 1633
Score = 38 (18.4 bits), Expect = 8.4e-109, Sum P(4) = 8.4e-109
Identities = 18/88 (20%), Positives = 38/88 (43%)
Query: 794 QRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREF 853
+R + Q + ++ MR + +RK L++ +D R A + L +
Sbjct: 553 EREQKKEQERIEKERMRRLMAEDEEGYRK-LIDQK---KDKRLAFLLSQTDEYISNLTQM 608
Query: 854 SKRKDDDRNKRMEALKNNDVERYREMLL 881
K+ DD+ K+ E ++ +E+L+
Sbjct: 609 VKQHKDDQMKKKEEEGKRLIQFKKELLM 636
Score = 37 (18.1 bits), Expect = 1.1e-108, Sum P(4) = 1.1e-108
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVE-LMRQVQT--SQKAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ L+ Q S KQ K Q +KK
Sbjct: 566 ERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKQHKD-DQMKKK 620
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 1065 (380.0 bits), Expect = 6.6e-115, Sum P(5) = 6.6e-115
Identities = 269/685 (39%), Positives = 382/685 (55%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ + A ++V + + + R GS YY++AHA++ERV +Q ++L GT
Sbjct: 674 VSEKDAKQIIETAKQDV--DDEYSMQYSAR-GSQ--SYYTVAHAISERVEKQSALLINGT 728
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP+LIIVP +
Sbjct: 729 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 788
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K
Sbjct: 789 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAK 847
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 848 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 907
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 908 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 962
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 963 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 1015
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 1016 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1075
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1076 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1135
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1136 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1195
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1196 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1249
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1250 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1308
Query: 1572 FGWIEEMTR---YDQV---PKWLRA 1590
FG R Y +WLRA
Sbjct: 1309 FGRGSRQRRDVDYSDALTEKQWLRA 1333
Score = 99 (39.9 bits), Expect = 6.6e-115, Sum P(5) = 6.6e-115
Identities = 38/133 (28%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++ +
Sbjct: 425 RQTLREARMTEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 482
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA +H RE K + +RM L D E YR+ L++Q+ R A L
Sbjct: 483 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD------RRLAYL- 534
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 535 --LQQTDEYVANL 545
Score = 80 (33.2 bits), Expect = 6.6e-115, Sum P(5) = 6.6e-115
Identities = 64/276 (23%), Positives = 99/276 (35%)
Query: 399 PPIHPPQTSLNM-TPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIPXXXXXXXXXX 457
P + PPQ+ ++ + G P P PE+ Q+ S P + IP
Sbjct: 104 PGMGPPQSPMDQHSQGYMSPHP-SPLGAPEHVSSPTPPQMPPSQPGALIP---------- 152
Query: 458 XXQGGLATQMPQQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVXXXXXX 514
G M Q G F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 153 ----GDPQAMNQPNRGPSPFSPVQLHQLRAQILAYKMLARGQ-PLPETLQLAVQGKRTLP 207
Query: 515 XXXXXXXXXXXXXVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDD 574
Q + + + Q + + + AQ Q P +Y
Sbjct: 208 GMQQQQQQQQQQQQQQQQQQQQQQQQQQPQQPQQQAQ-AQPQQQQQQQQQPALVSYNRPS 266
Query: 575 KAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRG 634
+ G SA K AP P AP ++V+ G + QQ PA
Sbjct: 267 GPGQELLLSGQSAPQKLSAPA--PSGRPSPAPQAAVQPTATAVPG--PSVQQ---PAPGQ 319
Query: 635 KSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKY 670
S Q+ + ++ P Q L P ++ R+Y
Sbjct: 320 PSPVLQLQQKQS-RIS-PIQKPQGLDPVEILQEREY 353
Score = 58 (25.5 bits), Expect = 1.5e-112, Sum P(4) = 1.5e-112
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQ 226
+Q + ++Q +Q QQQ Q+ +P+ P QQ
Sbjct: 213 QQQQQQQQQQQQQQQQQQQQQQQPQQPQQQ 242
Score = 49 (22.3 bits), Expect = 6.6e-115, Sum P(5) = 6.6e-115
Identities = 21/88 (23%), Positives = 34/88 (38%)
Query: 1848 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 1905
A+ + E ++ ESN + E S+S KI K TG+ P G
Sbjct: 1489 ARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRG 1548
Query: 1906 HTEDAADHF---KESWDGKIANASGSSN 1930
+ F +E + + + ASG+ N
Sbjct: 1549 KAKPVVSDFDSDEEQEENEQSEASGTDN 1576
Score = 49 (22.3 bits), Expect = 1.4e-111, Sum P(4) = 1.4e-111
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQ 245
+Q + ++Q +QPQQ Q+ + +P QQ Q + RP Q
Sbjct: 224 QQQQQQQQQQQQPQQP--QQQAQAQPQQQQQQQQQPALVSYNRPSGPGQ 270
Score = 45 (20.9 bits), Expect = 3.0e-111, Sum P(5) = 3.0e-111
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQL 437
P P + + PP PP + PG Q + N GP L QL
Sbjct: 127 PLGAPEHVSSPTPPQMPPSQPGALIPGDPQAMNQPNR-GPSPFSPVQLHQL 176
Score = 44 (20.5 bits), Expect = 2.2e-114, Sum P(5) = 2.2e-114
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 1624 ETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1658
E R G KGKK PN + + ++ E N
Sbjct: 1533 EKGRDTG-KGKKRPNRGKAKPVVSDFDSDEEQEEN 1566
Score = 43 (20.2 bits), Expect = 5.8e-111, Sum P(4) = 5.8e-111
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTL-GGQGMAANIIRP 240
++Q +Q QQ P P Q+ L GQ + P
Sbjct: 248 QQQQQQQQQPALVSYNRPSGPGQELLLSGQSAPQKLSAP 286
Score = 42 (19.8 bits), Expect = 2.7e-105, Sum P(5) = 2.7e-105
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSIS 818
QQQQ+ +Q ++ + + Q+ + Q Q Q+ +++Q +S
Sbjct: 214 QQQQQQQQQQQQQQQQQQQQQQPQQPQQQAQAQPQQQQQQQQQPALVS 261
Score = 37 (18.1 bits), Expect = 6.6e-115, Sum P(5) = 6.6e-115
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 306 MGAPSSPVPVSKQQVTSP 323
MG P SP+ Q SP
Sbjct: 106 MGPPQSPMDQHSQGYMSP 123
Score = 37 (18.1 bits), Expect = 2.0e-108, Sum P(5) = 2.0e-108
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++ + +MA + YRK + + +R+ + Q QT +
Sbjct: 506 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQ-QTDE 540
Score = 37 (18.1 bits), Expect = 8.9e-105, Sum P(5) = 8.9e-105
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ 813
QQQQ+ +Q ++ + ++Q + +Q Q + +++Q
Sbjct: 212 QQQQQQQQQQQQQQQQQQQQQQQQPQQPQQQAQAQPQQQQQQQ 254
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 1075 (383.5 bits), Expect = 1.4e-114, Sum P(4) = 1.4e-114
Identities = 279/730 (38%), Positives = 398/730 (54%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ + A ++V + + + R GS YY++AHA+ ERV +Q S+L GT
Sbjct: 643 VSEKDAKQIIETAKQDV--DDEYSMQYSAR-GSQ--SYYTVAHAITERVEKQSSLLINGT 697
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP+LIIVP +
Sbjct: 698 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 757
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K
Sbjct: 758 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAK 816
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 817 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 876
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 877 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 931
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 932 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 984
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 985 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1044
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1045 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1104
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1105 LGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1164
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1165 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1218
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1219 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1277
Query: 1572 FGWIEEMTR---YDQV---PKWLRA-STKEVNATIANLSKKPSKNILFGSNIGVDSGEIE 1624
FG R Y +WLRA + + K K N+ DSG+ +
Sbjct: 1278 FGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKR---RRNVDKDSGKED 1334
Query: 1625 TERKRGPKGK 1634
E+ + +G+
Sbjct: 1335 GEKAKKRRGR 1344
Score = 1065 (380.0 bits), Expect = 3.3e-113, Sum P(4) = 3.3e-113
Identities = 275/705 (39%), Positives = 395/705 (56%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AHA+ ERV +Q S+L GTL+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 675 YYTVAHAITERVEKQSSLLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 734
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
ALI YLME K GP+LIIVP + L NW E KW PSV I Y G R L Q +
Sbjct: 735 ALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LR 793
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLL 1156
+ KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR+LL
Sbjct: 794 SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILL 853
Query: 1157 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN P +F + F WF+ PF G D L E+ ++I
Sbjct: 854 TGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILI 908
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D ++
Sbjct: 909 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 968
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL---------NYPYFSD--LSKDFLVK 1325
++ + KTL N M+LRK CNHP + + +S+ ++ L +
Sbjct: 969 DKKGKGGA-------KTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYR 1021
Query: 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385
+ GK +LDRIL KL+ T HRVLLF MT L+ I+E+Y +R +Y R+DGTT EDR +
Sbjct: 1022 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1081
Query: 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445
+ FN S FIFLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQ+
Sbjct: 1082 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1141
Query: 1446 EVKVIYM---EAVVDKISSHQKEDELRSGGTVDLEDDLAGK-DRYIGSIE--GLIRNNIQ 1499
EV+V+ + +V +KI + K +L VD + AG D+ S E ++ ++
Sbjct: 1142 EVRVLRLCTVNSVEEKILAAAKY-KLN----VDQKVIQAGMFDQKSSSHERRAFLQAILE 1196
Query: 1500 -QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARS 1558
+ + + DEV + +Q E L + D +R +E D + + R++
Sbjct: 1197 HEEENEEEDEVPDDETLNQMIARREEEFDLFMRM-DMDRRRE---DARNPKRKPRLM--E 1250
Query: 1559 EDEVELFDQMDEEFGWIEEMTRYDQVPKWL-RASTKEVNATIAN-LSKKPSKNILFGSNI 1616
EDE+ + D+ +E +T ++ K R S + + ++ L++K
Sbjct: 1251 EDELPSWIIKDD--AEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLR------- 1301
Query: 1617 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYP 1661
++ G +E E + + KK + VD + G+ + +R G P
Sbjct: 1302 AIEDGNLE-EMEEEVRLKKRKRRRNVDKDSGKEDGEKAKKRRGRP 1345
Score = 90 (36.7 bits), Expect = 1.4e-114, Sum P(4) = 1.4e-114
Identities = 39/142 (27%), Positives = 63/142 (44%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWA 830
Q +QE++A R L + ++ ++ + QK ++ L SI Q K E H +
Sbjct: 385 QLRQEVVACMRRDTTLETAL-NSKAYKIEQERKRRQK--HQEYLNSILQHAKDFKEYHRS 441
Query: 831 IRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGD 890
+ ++ VA +H RE K + +RM L D E YR+ L++Q+
Sbjct: 442 VAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD---- 496
Query: 891 AAERYAVLSSFLTQTEEYLYKL 912
R A L L QT+EY+ L
Sbjct: 497 --RRLAYL---LQQTDEYVANL 513
Score = 72 (30.4 bits), Expect = 1.4e-114, Sum P(4) = 1.4e-114
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 172 FSPVQLHQLRAQILAYKMLARGQ-PLPENLQLAV 204
Score = 46 (21.3 bits), Expect = 1.4e-114, Sum P(4) = 1.4e-114
Identities = 17/81 (20%), Positives = 38/81 (46%)
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR---NLPSRKIANAPKSRASLKTGRLNCMPGHTED 1909
++E +++ + + ++SE SKS + L + + K + + R P ++D
Sbjct: 1467 ESEDESNDDEDEDDEEESESESKSVKVKIKLNKKDEKSREKGKGKKRQSRAKAKPVVSDD 1526
Query: 1910 AADHFKESWDGKIANASGSSN 1930
+D ++ D + ASGS +
Sbjct: 1527 DSDEDQDENDQ--SEASGSDD 1545
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 1065 (380.0 bits), Expect = 1.9e-114, Sum P(5) = 1.9e-114
Identities = 269/685 (39%), Positives = 382/685 (55%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ + A ++V + + + R GS YY++AHA++ERV +Q ++L GT
Sbjct: 676 VSEKDAKQIIETAKQDV--DDEYSMQYSAR-GSQ--SYYTVAHAISERVEKQSALLINGT 730
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP+LIIVP +
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 790
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K
Sbjct: 791 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAK 849
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 850 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 909
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 910 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 964
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 965 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 1017
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 1018 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1077
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1078 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1137
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1138 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1197
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1198 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1251
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1252 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1310
Query: 1572 FGWIEEMTR---YDQV---PKWLRA 1590
FG R Y +WLRA
Sbjct: 1311 FGRGSRQRRDVDYSDALTEKQWLRA 1335
Score = 99 (39.9 bits), Expect = 1.9e-114, Sum P(5) = 1.9e-114
Identities = 38/133 (28%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++ +
Sbjct: 427 RQTLREARMTEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 484
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA +H RE K + +RM L D E YR+ L++Q+ R A L
Sbjct: 485 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD------RRLAYL- 536
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 537 --LQQTDEYVANL 547
Score = 71 (30.1 bits), Expect = 1.9e-114, Sum P(5) = 1.9e-114
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 174 FSPVQLHQLRAQILAYKMLARGQ-PLPETLQLAV 206
Score = 60 (26.2 bits), Expect = 5.2e-113, Sum P(4) = 5.2e-113
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQT 227
++Q +Q QQQ Q +P+ P QQT
Sbjct: 220 QQQQQQQQQQQQQQPQQPQQPQQQT 244
Score = 48 (22.0 bits), Expect = 4.8e-112, Sum P(5) = 4.8e-112
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 391 PVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQL 437
P++ G PP PP + PG Q + N GP L QL
Sbjct: 137 PISGGGPTPPQMPPSQPGTLIPGDLQAMNQPNR-GPSPFSPVQLHQL 182
Score = 48 (22.0 bits), Expect = 9.4e-112, Sum P(4) = 9.4e-112
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 197 EQFGRGEKQMEQPQQ-QVSDQKGEPKPPSQQ 226
+Q + ++Q +QPQQ Q Q+ + +P QQ
Sbjct: 222 QQQQQQQQQQQQPQQPQQPQQQTQAQPQQQQ 252
Score = 46 (21.3 bits), Expect = 1.5e-111, Sum P(4) = 1.5e-111
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQ 226
+Q + ++Q +QPQQ + +P+ QQ
Sbjct: 225 QQQQQQQQQPQQPQQPQQQTQAQPQQQQQQ 254
Score = 43 (20.2 bits), Expect = 3.2e-111, Sum P(4) = 3.2e-111
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 204 KQMEQPQQQVSDQKGEPKPPSQQ 226
+Q +QPQQQ Q + + QQ
Sbjct: 235 QQPQQPQQQTQAQPQQQQQQQQQ 257
Score = 41 (19.5 bits), Expect = 1.0e-110, Sum P(3) = 1.0e-110
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
++ QPQQQ Q+ P S G G ++ Q Q + S
Sbjct: 242 QQTQAQPQQQQQQQQQPPALVSYNRPSGPGQ--ELLMTAQNTQQKLS 286
Score = 39 (18.8 bits), Expect = 5.2e-113, Sum P(4) = 5.2e-113
Identities = 14/51 (27%), Positives = 18/51 (35%)
Query: 375 QQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSG 425
QQ + Q +QP A+ + P P Q L Q L SG
Sbjct: 242 QQTQAQPQQQQQQQQQPPALVSYNRPSGPGQELLMTAQNTQQKLSAPAPSG 292
Score = 39 (18.8 bits), Expect = 5.2e-113, Sum P(4) = 5.2e-113
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 375 QQFSVHGRDNQVPSRQPVAIGNGLP-PIHPPQTSLNMTPG--VDQPLPVKNSSGPENSQM 431
Q+ + ++ Q P G P P Q + PG V QP P G + +
Sbjct: 272 QELLMTAQNTQQKLSAPAPSGRPSPAPPAATQPTATAVPGPSVQQPAP-----GQPSPVL 326
Query: 432 QYLRQLNRSSP 442
Q ++ +R SP
Sbjct: 327 QLQQKQSRISP 337
Score = 38 (18.4 bits), Expect = 1.9e-114, Sum P(5) = 1.9e-114
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 556 VSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQ 614
+++ N Q K A A + + +P T P P V Q +PV ++ Q
Sbjct: 276 MTAQNTQQ--KLSAPAPSGRPSPAPPAATQPTATAVPGPSVQQPAPGQPSPVLQLQQKQ 332
Score = 37 (18.1 bits), Expect = 1.9e-114, Sum P(5) = 1.9e-114
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 306 MGAPSSPVPVSKQQVTSP 323
MG P SP+ Q SP
Sbjct: 106 MGPPQSPMDQHSQGYMSP 123
Score = 37 (18.1 bits), Expect = 2.4e-114, Sum P(5) = 2.4e-114
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 600 KEEQQAPVSSVKSDQEVECGLLRTQQQSDFP 630
+++QQ P + Q+ + + QQQ P
Sbjct: 228 QQQQQQPQQPQQPQQQTQAQPQQQQQQQQQP 258
Score = 37 (18.1 bits), Expect = 5.6e-108, Sum P(5) = 5.6e-108
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++ + +MA + YRK + + +R+ + Q QT +
Sbjct: 508 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQ-QTDE 542
Score = 37 (18.1 bits), Expect = 1.9e-107, Sum P(4) = 1.9e-107
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRK 822
+ QQQQ+ +Q ++ + + Q+ + Q Q Q+ +++Q ++ + +
Sbjct: 215 MQQQQQQQQQQQQQQQQQQPQ--QPQQPQQQTQAQPQQQQQQQQQPPALVSYNR 266
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 1057 (377.1 bits), Expect = 4.0e-114, Sum P(4) = 4.0e-114
Identities = 252/622 (40%), Positives = 351/622 (56%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 720 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 779
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 780 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 838
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 839 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 898
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 899 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 953
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 954 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1013
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1014 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1066
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1067 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1126
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1127 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1186
Query: 1443 QKREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
Q+ EV+V+ + +V +KI + K + ++ G D + + ++ + ++
Sbjct: 1187 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAIL 1243
Query: 1495 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV--PSLQEVN 1552
+ Q + DEV + +Q E L + + R +E + P L E +
Sbjct: 1244 EHEEQD---EEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED 1300
Query: 1553 RM---IARSEDEVELFDQMDEE 1571
+ I + + EVE +EE
Sbjct: 1301 ELPSWIIKDDAEVERLTCEEEE 1322
Score = 105 (42.0 bits), Expect = 4.0e-114, Sum P(4) = 4.0e-114
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 436 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLT 493
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 494 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 545
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 546 --LQQTDEYVANL 556
Score = 75 (31.5 bits), Expect = 4.0e-114, Sum P(4) = 4.0e-114
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 469 QQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QQ G F ++QLH L+AQI+A++ L +G+ LP L A+
Sbjct: 164 QQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAV 204
Score = 62 (26.9 bits), Expect = 9.3e-113, Sum P(4) = 9.3e-113
Identities = 34/134 (25%), Positives = 46/134 (34%)
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAK 347
+P MQ ++ A + S G SP P + G N P
Sbjct: 210 MPGMQPQMPALPPPSVSATGPGPSPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPP 269
Query: 348 ARPTVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
P P P G +AA S Q + + PS P A+ P+ PPQT
Sbjct: 270 GGPP-KPWPEGPMANAAAPT-----STPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQ 323
Query: 408 LNMTPGVD-QPLPV 420
+PG QP P+
Sbjct: 324 ---SPGQPAQPAPM 334
Score = 54 (24.1 bits), Expect = 4.0e-114, Sum P(4) = 4.0e-114
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 1759 KRMPDELEEGEIAVSGDSH---MDHQQS---GSWTHDRDEGEDEQVLQPKIKRKRSIRVR 1812
+R+ E EE ++ G H +D+ S W +EG E++ + ++++K+S R R
Sbjct: 1314 ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEI-EEEVRQKKSSRKR 1372
Query: 1813 PRHTVERPEERSCTDTPLHRGDSS 1836
R + P + + + D S
Sbjct: 1373 KRDSDAGPSTPTTSTRSRDKDDES 1396
Score = 51 (23.0 bits), Expect = 1.3e-111, Sum P(4) = 1.3e-111
Identities = 27/130 (20%), Positives = 44/130 (33%)
Query: 292 QSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPT 351
Q + + + MG P SP+ Q SP + G S HA+ +
Sbjct: 92 QMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSP-LGG--SEHASSPVPASGPSSGPQMSSG 148
Query: 352 VSPSPL-GSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPP-IHPPQTSLN 409
+PL G+ A Q +H Q+ + + +A G LP +
Sbjct: 149 PGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKR 208
Query: 410 MTPGVDQPLP 419
PG+ +P
Sbjct: 209 PMPGMQPQMP 218
Score = 39 (18.8 bits), Expect = 3.4e-107, Sum P(4) = 3.4e-107
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 534 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 576
Score = 38 (18.4 bits), Expect = 4.3e-107, Sum P(4) = 4.3e-107
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 517 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 574
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 1062 (378.9 bits), Expect = 4.1e-114, Sum P(4) = 4.1e-114
Identities = 269/703 (38%), Positives = 387/703 (55%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
Q+ EV+V+ + +V +KI + K + ++ G D + + ++ + ++
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAIL 1251
Query: 1495 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRM 1554
+ Q + DEV + +Q E L + D +R +E + P + R+
Sbjct: 1252 EHEEQD---EEEDEVPDDETVNQMIARHEEEFDLFMRM-DLDRRREEARN-PKRKP--RL 1304
Query: 1555 IARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWL-RAST--KEVNATIANLSKKPSKNIL 1611
+ EDE+ + D+ +E +T ++ K R S KEV+ + + K+ K +
Sbjct: 1305 M--EEDELPSWIIKDD--AEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKQL- 1359
Query: 1612 FGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASS 1654
++ G +E E + + KK ++ D E G + +S
Sbjct: 1360 ---KAAIEEGTLE-EIEEEVRQKKSSRKRKRDSEAGSSTPTTS 1398
Score = 106 (42.4 bits), Expect = 4.1e-114, Sum P(4) = 4.1e-114
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 444 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFREYHRSVTGKLQKLT 501
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 502 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 553
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 554 --LQQTDEYVANL 564
Score = 75 (31.5 bits), Expect = 4.1e-114, Sum P(4) = 4.1e-114
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 469 QQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QQ G F ++QLH L+AQI+A++ L +G+ LP L A+
Sbjct: 164 QQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAV 204
Score = 59 (25.8 bits), Expect = 2.0e-112, Sum P(4) = 2.0e-112
Identities = 28/118 (23%), Positives = 42/118 (35%)
Query: 304 SNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPL-GSTTS 362
+ MG P SP+ Q SP + G S HA+ + +PL GS
Sbjct: 104 TGMGPPPSPMDQHSQGYPSP-LGG--SEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQ 160
Query: 363 AAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPP-IHPPQTSLNMTPGVDQPLP 419
A Q +H Q+ + + +A G LP + PG+ Q +P
Sbjct: 161 ALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMP 218
Score = 54 (24.1 bits), Expect = 4.7e-112, Sum P(5) = 4.7e-112
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPV 420
PS P A+ P+ PPQT +PG QP P+
Sbjct: 311 PSPAPPAVPPAASPVMPPQTQ---SPGQPAQPAPL 342
Score = 48 (22.0 bits), Expect = 4.1e-114, Sum P(4) = 4.1e-114
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGM 233
QM +P + + + KG P P + G GM
Sbjct: 71 QMHKPMESMHE-KGMPDDPRYNQMKGMGM 98
Score = 42 (19.8 bits), Expect = 1.2e-110, Sum P(4) = 1.2e-110
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 390 QPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
QP + PP PP S M P P
Sbjct: 306 QPTGRPSPAPPAVPPAASPVMPPQTQSP 333
Score = 39 (18.8 bits), Expect = 4.7e-112, Sum P(5) = 4.7e-112
Identities = 17/61 (27%), Positives = 19/61 (31%)
Query: 299 HKANESNMGAPS-SPVP--VSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
H NM P S VP + Q P P AN +PT PS
Sbjct: 253 HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
Query: 356 P 356
P
Sbjct: 313 P 313
Score = 39 (18.8 bits), Expect = 4.4e-107, Sum P(4) = 4.4e-107
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 542 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 584
Score = 38 (18.4 bits), Expect = 5.6e-107, Sum P(4) = 5.6e-107
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 582
Score = 37 (18.1 bits), Expect = 5.9e-113, Sum P(4) = 5.9e-113
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 412 PGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIP 447
P P+P + G M + + S + +P
Sbjct: 50 PSAGHPMPTQGPGGYPQDNMHQMHKPMESMHEKGMP 85
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 1065 (380.0 bits), Expect = 8.3e-114, Sum P(4) = 8.3e-114
Identities = 269/685 (39%), Positives = 382/685 (55%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ + A ++V + + + R GS YY++AHA++ERV +Q ++L GT
Sbjct: 651 VSEKDAKQIIETAKQDV--DDEYSMQYSAR-GSQ--SYYTVAHAISERVEKQSALLINGT 705
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP+LIIVP +
Sbjct: 706 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 765
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K
Sbjct: 766 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAK 824
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 825 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 884
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 885 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 939
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 940 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 992
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 993 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1052
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1053 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1112
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1113 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1172
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1173 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1226
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1227 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1285
Query: 1572 FGWIEEMTR---YDQV---PKWLRA 1590
FG R Y +WLRA
Sbjct: 1286 FGRGSRQRRDVDYSDALTEKQWLRA 1310
Score = 99 (39.9 bits), Expect = 8.3e-114, Sum P(4) = 8.3e-114
Identities = 38/133 (28%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++ +
Sbjct: 402 RQTLREARMTEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 459
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA +H RE K + +RM L D E YR+ L++Q+ R A L
Sbjct: 460 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD------RRLAYL- 511
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 512 --LQQTDEYVANL 522
Score = 71 (30.1 bits), Expect = 8.3e-114, Sum P(4) = 8.3e-114
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 173 FSPVQLHQLRAQILAYKMLARGQ-PLPETLQLAV 205
Score = 50 (22.7 bits), Expect = 1.3e-111, Sum P(4) = 1.3e-111
Identities = 33/146 (22%), Positives = 48/146 (32%)
Query: 306 MGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAX 365
MG P SP+ Q SP + +P + P P PL A
Sbjct: 105 MGPPQSPMDQHSQGYMSPHPSPLGAPE-HVSSPISGGGPTPPQMPPSQPGPLIPGDPQAM 163
Query: 366 XXXXXXIS-LQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMT-PGVDQPLPVKNS 423
S +H Q+ + + +A G LP T PG+ Q P +
Sbjct: 164 NQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQPPPQPQ 223
Query: 424 SGPENSQMQYLRQ--LNRSSPQSAIP 447
P+ Q Q +Q +N + P P
Sbjct: 224 PQPQPQQPQPQQQALVNYNRPSGPGP 249
Score = 47 (21.6 bits), Expect = 2.8e-112, Sum P(5) = 2.8e-112
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSP 442
P + PV +G P PP + V P + + G + +Q ++ +R SP
Sbjct: 257 PQKLPVPAPSGRPSPAPPAAAPPPAAAVPGPSVPQPAPGQPSPILQLQQKQSRISP 312
Score = 45 (20.9 bits), Expect = 8.3e-114, Sum P(4) = 8.3e-114
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 1624 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 1656
E R +G KGKK PN + + ++ S+ DE
Sbjct: 1510 EKGRDKG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1542
Score = 45 (20.9 bits), Expect = 2.8e-112, Sum P(5) = 2.8e-112
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 202 GEKQMEQPQQQVSDQKGEPKPPSQQTL 228
G +Q PQ Q Q +P+P QQ L
Sbjct: 213 GMQQQPPPQPQPQPQPQQPQP-QQQAL 238
Score = 41 (19.5 bits), Expect = 7.3e-112, Sum P(5) = 7.3e-112
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLG 229
+ Q QPQQQ P P + G
Sbjct: 227 QPQQPQPQQQALVNYNRPSGPGPELSG 253
Score = 40 (19.1 bits), Expect = 2.8e-113, Sum P(4) = 2.8e-113
Identities = 19/88 (21%), Positives = 34/88 (38%)
Query: 1848 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 1905
A+ + E ++ ESN ++ E S+S KI K G+ P G
Sbjct: 1466 ARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRG 1525
Query: 1906 HTEDAADHF---KESWDGKIANASGSSN 1930
+ F +E + + + ASG+ +
Sbjct: 1526 KAKPVVSDFDSDEEQDENEQSEASGTDD 1553
Score = 37 (18.1 bits), Expect = 2.6e-107, Sum P(4) = 2.6e-107
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++ + +MA + YRK + + +R+ + Q QT +
Sbjct: 483 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQ-QTDE 517
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 1065 (380.0 bits), Expect = 8.9e-114, Sum P(4) = 8.9e-114
Identities = 269/685 (39%), Positives = 382/685 (55%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ + A ++V + + + R GS YY++AHA++ERV +Q ++L GT
Sbjct: 653 VSEKDAKQIIETAKQDV--DDEYSMQYSAR-GSQ--SYYTVAHAISERVEKQSALLINGT 707
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP+LIIVP +
Sbjct: 708 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 767
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K
Sbjct: 768 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAK 826
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 827 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 886
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 887 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 941
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 942 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 994
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 995 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1054
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1055 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1114
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1115 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1174
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1175 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1228
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1229 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1287
Query: 1572 FGWIEEMTR---YDQV---PKWLRA 1590
FG R Y +WLRA
Sbjct: 1288 FGRGSRQRRDVDYSDALTEKQWLRA 1312
Score = 99 (39.9 bits), Expect = 8.9e-114, Sum P(4) = 8.9e-114
Identities = 38/133 (28%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++ +
Sbjct: 404 RQTLREARMTEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 461
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA +H RE K + +RM L D E YR+ L++Q+ R A L
Sbjct: 462 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD------RRLAYL- 513
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 514 --LQQTDEYVANL 524
Score = 71 (30.1 bits), Expect = 8.9e-114, Sum P(4) = 8.9e-114
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 174 FSPVQLHQLRAQILAYKMLARGQ-PLPETLQLAV 206
Score = 49 (22.3 bits), Expect = 1.5e-112, Sum P(5) = 1.5e-112
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 387 PSRQPVAIGNGLPPIHPP---QTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSP 442
P + PV +G P PP Q PG P P P +Q ++ +R SP
Sbjct: 259 PQKLPVPAPSGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPI---LQLQQKQSRISP 314
Score = 48 (22.0 bits), Expect = 2.3e-111, Sum P(4) = 2.3e-111
Identities = 33/147 (22%), Positives = 46/147 (31%)
Query: 306 MGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAX 365
MG P SP+ Q SP + +P + P P PL S A
Sbjct: 106 MGPPQSPMDQHSQGYMSPHPSPLGAPE-HVSSPMSGGGPTPPQMPPSQPGPLISGDPQAM 164
Query: 366 XXXXXXIS-LQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMT-PGVDQPLPVKNS 423
S +H Q+ + + +A G LP T PG+ Q P
Sbjct: 165 SQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQPQHQQ 224
Query: 424 SG---PENSQMQYLRQLNRSSPQSAIP 447
P+ Q Q +N + P P
Sbjct: 225 PPQPQPQAQQPQQQALVNYNRPSGPGP 251
Score = 46 (21.3 bits), Expect = 1.5e-112, Sum P(5) = 1.5e-112
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRP 240
Q +QPQ Q Q +P+P +QQ Q N RP
Sbjct: 216 QQQQPQHQ---QPPQPQPQAQQPQ--QQALVNYNRP 246
Score = 45 (20.9 bits), Expect = 8.9e-114, Sum P(4) = 8.9e-114
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 1624 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 1656
E R +G KGKK PN + + ++ S+ DE
Sbjct: 1512 EKGRDKG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1544
Score = 43 (20.2 bits), Expect = 3.0e-112, Sum P(5) = 3.0e-112
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLG 229
+ Q +QPQQQ P P + G
Sbjct: 229 QPQAQQPQQQALVNYNRPSGPGPELSG 255
Score = 40 (19.1 bits), Expect = 3.0e-113, Sum P(4) = 3.0e-113
Identities = 19/88 (21%), Positives = 34/88 (38%)
Query: 1848 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 1905
A+ + E ++ ESN ++ E S+S KI K G+ P G
Sbjct: 1468 ARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRG 1527
Query: 1906 HTEDAADHF---KESWDGKIANASGSSN 1930
+ F +E + + + ASG+ +
Sbjct: 1528 KAKPVVSDFDSDEEQDENEQSEASGTDD 1555
Score = 37 (18.1 bits), Expect = 2.8e-107, Sum P(4) = 2.8e-107
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++ + +MA + YRK + + +R+ + Q QT +
Sbjct: 485 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQ-QTDE 519
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 1057 (377.1 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 252/622 (40%), Positives = 351/622 (56%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
Q+ EV+V+ + +V +KI + K + ++ G D + + ++ + ++
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAIL 1251
Query: 1495 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV--PSLQEVN 1552
+ Q + DEV + +Q E L + + R +E + P L E +
Sbjct: 1252 EHEEQD---EEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED 1308
Query: 1553 RM---IARSEDEVELFDQMDEE 1571
+ I + + EVE +EE
Sbjct: 1309 ELPSWIIKDDAEVERLTCEEEE 1330
Score = 106 (42.4 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 444 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFREYHRSVTGKLQKLT 501
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 502 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 553
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 554 --LQQTDEYVANL 564
Score = 75 (31.5 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 469 QQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QQ G F ++QLH L+AQI+A++ L +G+ LP L A+
Sbjct: 164 QQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAV 204
Score = 59 (25.8 bits), Expect = 7.5e-112, Sum P(4) = 7.5e-112
Identities = 28/118 (23%), Positives = 42/118 (35%)
Query: 304 SNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPL-GSTTS 362
+ MG P SP+ Q SP + G S HA+ + +PL GS
Sbjct: 104 TGMGPPPSPMDQHSQGYPSP-LGG--SEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQ 160
Query: 363 AAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPP-IHPPQTSLNMTPGVDQPLP 419
A Q +H Q+ + + +A G LP + PG+ Q +P
Sbjct: 161 ALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMP 218
Score = 54 (24.1 bits), Expect = 1.8e-111, Sum P(5) = 1.8e-111
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPV 420
PS P A+ P+ PPQT +PG QP P+
Sbjct: 311 PSPAPPAVPPAASPVMPPQTQ---SPGQPAQPAPL 342
Score = 48 (22.0 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGM 233
QM +P + + + KG P P + G GM
Sbjct: 71 QMHKPMESMHE-KGMPDDPRYNQMKGMGM 98
Score = 42 (19.8 bits), Expect = 4.6e-110, Sum P(4) = 4.6e-110
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 390 QPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
QP + PP PP S M P P
Sbjct: 306 QPTGRPSPAPPAVPPAASPVMPPQTQSP 333
Score = 39 (18.8 bits), Expect = 1.8e-111, Sum P(5) = 1.8e-111
Identities = 17/61 (27%), Positives = 19/61 (31%)
Query: 299 HKANESNMGAPS-SPVP--VSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
H NM P S VP + Q P P AN +PT PS
Sbjct: 253 HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
Query: 356 P 356
P
Sbjct: 313 P 313
Score = 39 (18.8 bits), Expect = 1.7e-106, Sum P(4) = 1.7e-106
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 542 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 584
Score = 38 (18.4 bits), Expect = 2.1e-106, Sum P(4) = 2.1e-106
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 582
Score = 37 (18.1 bits), Expect = 2.3e-112, Sum P(4) = 2.3e-112
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 412 PGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIP 447
P P+P + G M + + S + +P
Sbjct: 50 PSAGHPMPTQGPGGYPQDNMHQMHKPMESMHEKGMP 85
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 1057 (377.1 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 252/622 (40%), Positives = 351/622 (56%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
Q+ EV+V+ + +V +KI + K + ++ G D + + ++ + ++
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAIL 1251
Query: 1495 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV--PSLQEVN 1552
+ Q + DEV + +Q E L + + R +E + P L E +
Sbjct: 1252 EHEEQD---EEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED 1308
Query: 1553 RM---IARSEDEVELFDQMDEE 1571
+ I + + EVE +EE
Sbjct: 1309 ELPSWIIKDDAEVERLTCEEEE 1330
Score = 106 (42.4 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 444 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFREYHRSVTGKLQKLT 501
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 502 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 553
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 554 --LQQTDEYVANL 564
Score = 75 (31.5 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 469 QQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QQ G F ++QLH L+AQI+A++ L +G+ LP L A+
Sbjct: 164 QQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAV 204
Score = 54 (24.1 bits), Expect = 1.8e-111, Sum P(5) = 1.8e-111
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPV 420
PS P A+ P+ PPQT +PG QP P+
Sbjct: 311 PSPAPPAVPPAASPVMPPQTQ---SPGQPAQPAPL 342
Score = 48 (22.0 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGM 233
QM +P + + + KG P P + G GM
Sbjct: 71 QMHKPMESMHE-KGMPDDPRYNQMKGMGM 98
Score = 42 (19.8 bits), Expect = 4.6e-110, Sum P(4) = 4.6e-110
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 390 QPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
QP + PP PP S M P P
Sbjct: 306 QPTGRPSPAPPAVPPAASPVMPPQTQSP 333
Score = 39 (18.8 bits), Expect = 1.8e-111, Sum P(5) = 1.8e-111
Identities = 17/61 (27%), Positives = 19/61 (31%)
Query: 299 HKANESNMGAPS-SPVP--VSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
H NM P S VP + Q P P AN +PT PS
Sbjct: 253 HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
Query: 356 P 356
P
Sbjct: 313 P 313
Score = 39 (18.8 bits), Expect = 1.7e-106, Sum P(4) = 1.7e-106
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 542 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 584
Score = 38 (18.4 bits), Expect = 2.1e-106, Sum P(4) = 2.1e-106
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 582
Score = 37 (18.1 bits), Expect = 2.3e-112, Sum P(4) = 2.3e-112
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 412 PGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIP 447
P P+P + G M + + S + +P
Sbjct: 50 PSAGHPMPTQGPGGYPQDNMHQMHKPMESMHEKGMP 85
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 1065 (380.0 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 269/685 (39%), Positives = 382/685 (55%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ + A ++V + + + R GS YY++AHA++ERV +Q ++L GT
Sbjct: 653 VSEKDAKQIIETAKQDV--DDEYSMQYSAR-GSQ--SYYTVAHAISERVEKQSALLINGT 707
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP+LIIVP +
Sbjct: 708 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 767
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K
Sbjct: 768 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAK 826
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 827 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 886
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 887 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 941
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 942 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 994
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 995 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1054
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1055 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1114
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1115 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1174
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1175 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1228
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1229 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1287
Query: 1572 FGWIEEMTR---YDQV---PKWLRA 1590
FG R Y +WLRA
Sbjct: 1288 FGRGSRQRRDVDYSDALTEKQWLRA 1312
Score = 99 (39.9 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 38/133 (28%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++ +
Sbjct: 404 RQTLREARMTEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 461
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA +H RE K + +RM L D E YR+ L++Q+ R A L
Sbjct: 462 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD------RRLAYL- 513
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 514 --LQQTDEYVANL 524
Score = 71 (30.1 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 174 FSPVQLHQLRAQILAYKMLARGQ-PLPETLQLAV 206
Score = 49 (22.3 bits), Expect = 3.1e-112, Sum P(5) = 3.1e-112
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 387 PSRQPVAIGNGLPPIHPP---QTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSP 442
P + PV +G P PP Q PG P P P +Q ++ +R SP
Sbjct: 259 PQKLPVPAPSGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPI---LQLQQKQSRISP 314
Score = 48 (22.0 bits), Expect = 4.1e-111, Sum P(4) = 4.1e-111
Identities = 33/147 (22%), Positives = 46/147 (31%)
Query: 306 MGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAX 365
MG P SP+ Q SP + +P + P P PL S A
Sbjct: 106 MGPPQSPMDQHSQGYMSPHPSPLGAPE-HVSSPMSGGGPTPPQMPPSQPGPLISGDPQAM 164
Query: 366 XXXXXXIS-LQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMT-PGVDQPLPVKNS 423
S +H Q+ + + +A G LP T PG+ Q P
Sbjct: 165 SQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQPQHQQ 224
Query: 424 SG---PENSQMQYLRQLNRSSPQSAIP 447
P+ Q Q +N + P P
Sbjct: 225 PPQPQPQAQQPQQQALVNYNRPSGPGP 251
Score = 46 (21.3 bits), Expect = 3.1e-112, Sum P(5) = 3.1e-112
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRP 240
Q +QPQ Q Q +P+P +QQ Q N RP
Sbjct: 216 QQQQPQHQ---QPPQPQPQAQQPQ--QQALVNYNRP 246
Score = 45 (20.9 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 1624 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 1656
E R +G KGKK PN + + ++ S+ DE
Sbjct: 1530 EKGRDKG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1562
Score = 43 (20.2 bits), Expect = 6.3e-112, Sum P(5) = 6.3e-112
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLG 229
+ Q +QPQQQ P P + G
Sbjct: 229 QPQAQQPQQQALVNYNRPSGPGPELSG 255
Score = 40 (19.1 bits), Expect = 5.4e-113, Sum P(4) = 5.4e-113
Identities = 19/88 (21%), Positives = 34/88 (38%)
Query: 1848 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 1905
A+ + E ++ ESN ++ E S+S KI K G+ P G
Sbjct: 1486 ARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRG 1545
Query: 1906 HTEDAADHF---KESWDGKIANASGSSN 1930
+ F +E + + + ASG+ +
Sbjct: 1546 KAKPVVSDFDSDEEQDENEQSEASGTDD 1573
Score = 37 (18.1 bits), Expect = 5.1e-107, Sum P(4) = 5.1e-107
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++ + +MA + YRK + + +R+ + Q QT +
Sbjct: 485 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQ-QTDE 519
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 1057 (377.1 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 252/622 (40%), Positives = 351/622 (56%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
Q+ EV+V+ + +V +KI + K + ++ G D + + ++ + ++
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAIL 1251
Query: 1495 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV--PSLQEVN 1552
+ Q + DEV + +Q E L + + R +E + P L E +
Sbjct: 1252 EHEEQD---EEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED 1308
Query: 1553 RM---IARSEDEVELFDQMDEE 1571
+ I + + EVE +EE
Sbjct: 1309 ELPSWIIKDDAEVERLTCEEEE 1330
Score = 106 (42.4 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 444 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFREYHRSVTGKLQKLT 501
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 502 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 553
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 554 --LQQTDEYVANL 564
Score = 75 (31.5 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 469 QQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QQ G F ++QLH L+AQI+A++ L +G+ LP L A+
Sbjct: 164 QQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAV 204
Score = 59 (25.8 bits), Expect = 7.7e-112, Sum P(4) = 7.7e-112
Identities = 28/118 (23%), Positives = 42/118 (35%)
Query: 304 SNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPL-GSTTS 362
+ MG P SP+ Q SP + G S HA+ + +PL GS
Sbjct: 104 TGMGPPPSPMDQHSQGYPSP-LGG--SEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQ 160
Query: 363 AAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPP-IHPPQTSLNMTPGVDQPLP 419
A Q +H Q+ + + +A G LP + PG+ Q +P
Sbjct: 161 ALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMP 218
Score = 54 (24.1 bits), Expect = 1.9e-111, Sum P(5) = 1.9e-111
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPV 420
PS P A+ P+ PPQT +PG QP P+
Sbjct: 311 PSPAPPAVPPAASPVMPPQTQ---SPGQPAQPAPL 342
Score = 48 (22.0 bits), Expect = 1.6e-113, Sum P(4) = 1.6e-113
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGM 233
QM +P + + + KG P P + G GM
Sbjct: 71 QMHKPMESMHE-KGMPDDPRYNQMKGMGM 98
Score = 42 (19.8 bits), Expect = 4.7e-110, Sum P(4) = 4.7e-110
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 390 QPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
QP + PP PP S M P P
Sbjct: 306 QPTGRPSPAPPAVPPAASPVMPPQTQSP 333
Score = 39 (18.8 bits), Expect = 1.9e-111, Sum P(5) = 1.9e-111
Identities = 17/61 (27%), Positives = 19/61 (31%)
Query: 299 HKANESNMGAPS-SPVP--VSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
H NM P S VP + Q P P AN +PT PS
Sbjct: 253 HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
Query: 356 P 356
P
Sbjct: 313 P 313
Score = 39 (18.8 bits), Expect = 1.7e-106, Sum P(4) = 1.7e-106
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 542 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 584
Score = 38 (18.4 bits), Expect = 2.2e-106, Sum P(4) = 2.2e-106
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 582
Score = 37 (18.1 bits), Expect = 2.3e-112, Sum P(4) = 2.3e-112
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 412 PGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIP 447
P P+P + G M + + S + +P
Sbjct: 50 PSAGHPMPTQGPGGYPQDNMHQMHKPMESMHEKGMP 85
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 1061 (378.5 bits), Expect = 2.2e-113, Sum P(4) = 2.2e-113
Identities = 254/621 (40%), Positives = 351/621 (56%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV E+V +Q S+L G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 740 LQSYYAVAHAVTEKVEKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 799
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLMEFK GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 800 QTIALITYLMEFKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAAR-RAFLP 858
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
+ + KFNVLVTTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 859 ILRSGKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRR 918
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
+LLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 919 VLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 973
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 974 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1033
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1034 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGSD 1086
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1087 LYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAED 1146
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + +FN FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1147 RGMLLKNFNDPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1206
Query: 1443 QKREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
Q+ EV+V+ + +V +KI + K + ++ G D + + ++ + ++
Sbjct: 1207 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAIL 1263
Query: 1495 RNNIQQYKIDMA--DEVINA--GRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 1550
+ Q + D DE +N R ++ H RM L+ +E R + + E
Sbjct: 1264 EHEEQDEEEDEVPDDETVNQMIARSEEEFDHF-MRMDLDRR-REEARNPKRRPRLMEEDE 1321
Query: 1551 VNRMIARSEDEVELFDQMDEE 1571
+ I + + EVE +EE
Sbjct: 1322 LPTWIMKDDAEVERLTCEEEE 1342
Score = 107 (42.7 bits), Expect = 2.2e-113, Sum P(4) = 2.2e-113
Identities = 40/133 (30%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H +I
Sbjct: 462 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSITAKMQKLT 519
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 520 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 571
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 572 --LQQTDEYVANL 582
Score = 75 (31.5 bits), Expect = 2.2e-113, Sum P(4) = 2.2e-113
Identities = 35/135 (25%), Positives = 50/135 (37%)
Query: 381 GRDNQVPSRQPV-AIGNGLP-PIHPPQTSLNMTPGVDQPLPVKNSSGP-----ENSQMQY 433
G P P+ G P P+ + + P P SGP E Q
Sbjct: 102 GHSGMGPPPSPMDQHSQGYPSPLGGSDHAPSPVPANGPPSGPMMPSGPGAMPMEGGDPQA 161
Query: 434 LRQLNRSSPQSAIPXXXXXXXX-XXXXQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRL 492
+ Q NRS + GG P F ++QLH L+AQI+A++ L
Sbjct: 162 MAQQNRSGGAGGVAGPGPSGGPPNAGGPGGAGGPTP-----FNQNQLHQLRAQIMAYKML 216
Query: 493 KKGEGTLPQELLRAI 507
+G+ LP L A+
Sbjct: 217 ARGQ-PLPDHLQMAV 230
Score = 48 (22.0 bits), Expect = 2.6e-111, Sum P(5) = 2.6e-111
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 292 QSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSP 331
Q + + + S MG P SP+ Q SP +++P
Sbjct: 92 QMKGMGMRQGGHSGMGPPPSPMDQHSQGYPSPLGGSDHAP 131
Score = 45 (20.9 bits), Expect = 2.6e-111, Sum P(5) = 2.6e-111
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
PS P ++ P+ PPQT +PG QP
Sbjct: 331 PSPAPPSVPPAASPVMPPQTQ---SPG--QP 356
Score = 45 (20.9 bits), Expect = 3.1e-110, Sum P(4) = 3.1e-110
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 378 SVHGRDNQVPSRQPVAIGNGLPPIHP---PQTSLNMTPGVDQPLPVKNSSG-PENSQ 430
S HG PS P + G+ LPP P PQ +++ + +P+ + G PE+ +
Sbjct: 38 SAHGMMG--PSPGPPSSGHPLPPQGPSGYPQDNMHQ---MHKPMEGMHEKGIPEDQR 89
Score = 43 (20.2 bits), Expect = 5.0e-110, Sum P(4) = 5.0e-110
Identities = 24/113 (21%), Positives = 33/113 (29%)
Query: 307 GAPSSPVPVSKQQV--TSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAA 364
G P+ P P S Q P + G P+ N V P G T+
Sbjct: 242 GMPNMP-PASGQGAGPPGPGVPGPGGPNYNRPHGMVGPNMPPPGPSGVPPGLQGQPTNGP 300
Query: 365 XXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
+ + ++ QP + PP PP S M P P
Sbjct: 301 PKPWPEGPMVNAAAPASAPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSP 353
Score = 42 (19.8 bits), Expect = 2.2e-113, Sum P(4) = 2.2e-113
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 1756 SLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRP-R 1814
S+ +++ E EE E GD + + D DEG + + K+K K S + + R
Sbjct: 1540 SVRQKIEKEEEESE----GDDSEEEED------DVDEGSESESRSVKVKIKLSRKDKAER 1589
Query: 1815 HTVERPEERSCTDTPLHRGDSS 1836
R RS P+ D S
Sbjct: 1590 GKGRRRTGRSSRPKPVVSDDDS 1611
Score = 40 (19.1 bits), Expect = 2.3e-106, Sum P(4) = 2.3e-106
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 590 KEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKS 636
+EP P P +E++ P + EV+ + + D + G S
Sbjct: 688 EEPQPSQAPTEEKKVIPDPDSEDVSEVDARHIIEHAKQDVDDEYGNS 734
Score = 38 (18.4 bits), Expect = 1.7e-109, Sum P(4) = 1.7e-109
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 412 PGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIP 447
P PLP + SG M + + + IP
Sbjct: 50 PSSGHPLPPQGPSGYPQDNMHQMHKPMEGMHEKGIP 85
Score = 38 (18.4 bits), Expect = 3.8e-106, Sum P(4) = 3.8e-106
Identities = 19/105 (18%), Positives = 46/105 (43%)
Query: 708 LLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQ--IEXXXXXXXXXXXXX 765
L ++ +E +K+R ++ + ++ IL + K + ++Q +
Sbjct: 474 LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSITAKMQKLTKAVATYHANTEREQ 533
Query: 766 XXEVDQQQQE----IMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
E ++ ++E +MA + YRK + + +R+ + Q QT +
Sbjct: 534 KKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDE 577
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 1065 (380.0 bits), Expect = 2.6e-113, Sum P(6) = 2.6e-113
Identities = 269/685 (39%), Positives = 382/685 (55%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ + A ++V + + + R GS YY++AHA++ERV +Q ++L GT
Sbjct: 676 VSEKDAKQIIETAKQDV--DDEYSMQYSAR-GSQ--SYYTVAHAISERVEKQSALLINGT 730
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP+LIIVP +
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 790
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K
Sbjct: 791 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAK 849
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 850 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 909
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 910 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 964
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 965 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 1017
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 1018 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1077
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1078 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1137
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1138 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1197
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1198 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1251
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1252 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1310
Query: 1572 FGWIEEMTR---YDQV---PKWLRA 1590
FG R Y +WLRA
Sbjct: 1311 FGRGSRQRRDVDYSDALTEKQWLRA 1335
Score = 99 (39.9 bits), Expect = 2.6e-113, Sum P(6) = 2.6e-113
Identities = 38/133 (28%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++ +
Sbjct: 427 RQTLREARMTEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 484
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA +H RE K + +RM L D E YR+ L++Q+ R A L
Sbjct: 485 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD------RRLAYL- 536
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 537 --LQQTDEYVANL 547
Score = 71 (30.1 bits), Expect = 2.6e-113, Sum P(6) = 2.6e-113
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 174 FSPVQLHQLRAQILAYKMLARGQ-PLPETLQLAV 206
Score = 60 (26.2 bits), Expect = 5.4e-112, Sum P(5) = 5.4e-112
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQT 227
++Q +Q QQQ Q +P+ P QQT
Sbjct: 220 QQQQQQQQQQQQQQPQQPQQPQQQT 244
Score = 48 (22.0 bits), Expect = 6.5e-111, Sum P(6) = 6.5e-111
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 391 PVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQL 437
P++ G PP PP + PG Q + N GP L QL
Sbjct: 137 PISGGGPTPPQMPPSQPGTLIPGDLQAMNQPNR-GPSPFSPVQLHQL 182
Score = 48 (22.0 bits), Expect = 9.7e-111, Sum P(5) = 9.7e-111
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 197 EQFGRGEKQMEQPQQ-QVSDQKGEPKPPSQQ 226
+Q + ++Q +QPQQ Q Q+ + +P QQ
Sbjct: 222 QQQQQQQQQQQQPQQPQQPQQQTQAQPQQQQ 252
Score = 46 (21.3 bits), Expect = 1.6e-110, Sum P(5) = 1.6e-110
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQ 226
+Q + ++Q +QPQQ + +P+ QQ
Sbjct: 225 QQQQQQQQQPQQPQQPQQQTQAQPQQQQQQ 254
Score = 43 (20.2 bits), Expect = 3.2e-110, Sum P(5) = 3.2e-110
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 204 KQMEQPQQQVSDQKGEPKPPSQQ 226
+Q +QPQQQ Q + + QQ
Sbjct: 235 QQPQQPQQQTQAQPQQQQQQQQQ 257
Score = 42 (19.8 bits), Expect = 2.6e-113, Sum P(6) = 2.6e-113
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1624 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 1656
E R G KGKK PN + + ++ S+ DE
Sbjct: 1553 EKGRDTG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1585
Score = 42 (19.8 bits), Expect = 2.6e-113, Sum P(6) = 2.6e-113
Identities = 19/88 (21%), Positives = 35/88 (39%)
Query: 1848 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 1905
A+ + E ++ ESN ++ E S++ KI K TG+ P G
Sbjct: 1509 ARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRG 1568
Query: 1906 HTEDAADHF---KESWDGKIANASGSSN 1930
+ F +E + + + ASG+ +
Sbjct: 1569 KAKPVVSDFDSDEEQDENEQSEASGTDD 1596
Score = 41 (19.5 bits), Expect = 8.8e-110, Sum P(4) = 8.8e-110
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
++ QPQQQ Q+ P S G G ++ Q Q + S
Sbjct: 242 QQTQAQPQQQQQQQQQPPALVSYNRPSGPGQ--ELLMTAQNTQQKLS 286
Score = 39 (18.8 bits), Expect = 5.4e-112, Sum P(5) = 5.4e-112
Identities = 14/51 (27%), Positives = 18/51 (35%)
Query: 375 QQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSG 425
QQ + Q +QP A+ + P P Q L Q L SG
Sbjct: 242 QQTQAQPQQQQQQQQQPPALVSYNRPSGPGQELLMTAQNTQQKLSAPAPSG 292
Score = 39 (18.8 bits), Expect = 5.4e-112, Sum P(5) = 5.4e-112
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 375 QQFSVHGRDNQVPSRQPVAIGNGLP-PIHPPQTSLNMTPG--VDQPLPVKNSSGPENSQM 431
Q+ + ++ Q P G P P Q + PG V QP P G + +
Sbjct: 272 QELLMTAQNTQQKLSAPAPSGRPSPAPPAATQPTATAVPGPSVQQPAP-----GQPSPVL 326
Query: 432 QYLRQLNRSSP 442
Q ++ +R SP
Sbjct: 327 QLQQKQSRISP 337
Score = 38 (18.4 bits), Expect = 2.6e-113, Sum P(6) = 2.6e-113
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 556 VSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQ 614
+++ N Q K A A + + +P T P P V Q +PV ++ Q
Sbjct: 276 MTAQNTQQ--KLSAPAPSGRPSPAPPAATQPTATAVPGPSVQQPAPGQPSPVLQLQQKQ 332
Score = 37 (18.1 bits), Expect = 2.6e-113, Sum P(6) = 2.6e-113
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 306 MGAPSSPVPVSKQQVTSP 323
MG P SP+ Q SP
Sbjct: 106 MGPPQSPMDQHSQGYMSP 123
Score = 37 (18.1 bits), Expect = 3.3e-113, Sum P(6) = 3.3e-113
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 600 KEEQQAPVSSVKSDQEVECGLLRTQQQSDFP 630
+++QQ P + Q+ + + QQQ P
Sbjct: 228 QQQQQQPQQPQQPQQQTQAQPQQQQQQQQQP 258
Score = 37 (18.1 bits), Expect = 7.3e-107, Sum P(6) = 7.3e-107
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++ + +MA + YRK + + +R+ + Q QT +
Sbjct: 508 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQ-QTDE 542
Score = 37 (18.1 bits), Expect = 1.8e-106, Sum P(5) = 1.8e-106
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRK 822
+ QQQQ+ +Q ++ + + Q+ + Q Q Q+ +++Q ++ + +
Sbjct: 215 MQQQQQQQQQQQQQQQQQQPQ--QPQQPQQQTQAQPQQQQQQQQQPPALVSYNR 266
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 1070 (381.7 bits), Expect = 5.7e-113, Sum P(3) = 5.7e-113
Identities = 260/634 (41%), Positives = 356/634 (56%)
Query: 965 EMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
E ++ +S YY +AHAV ERV +Q + L GTL+ YQI GL+WM+SLYNN LNGIL
Sbjct: 690 EYSSQAGQTSSQSYYGVAHAVIERVDKQSTFLINGTLKQYQIQGLEWMVSLYNNNLNGIL 749
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKT+Q + LI YLME K GP+LIIVP + L NW EL KW PS+ I Y G
Sbjct: 750 ADEMGLGKTIQTIGLITYLMELKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGT 809
Query: 1085 KDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARD 1144
R L Q + + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L +
Sbjct: 810 PSMRRSLVPQ-LRSGKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 868
Query: 1145 LD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNA 1203
L+ Y RRLLLTGTPLQN P +F + F WF+ PF G
Sbjct: 869 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERV 926
Query: 1204 DDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
D L E+ ++II RLH++L PF+LRR ++VE LP KV V++C MSAIQ +Y +
Sbjct: 927 D---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHM 983
Query: 1264 KATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL------------LN 1311
+ G L D ++ ++ + KTL N M+L+K CNHP L
Sbjct: 984 QGKGILLTDGSEKDKKGKGGA-------KTLMNTIMQLKKICNHPYMFQHIEESFAEHLG 1036
Query: 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1371
+P +S L ++ GK +LDRIL KL+ T HRVLLF MT L+ ILE+Y +R +Y
Sbjct: 1037 FPN-GIISGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLY 1095
Query: 1372 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNE 1431
R+DGTT EDR + FN S FIFLLS RA G GLNLQ+ADTV+I+D D NP +
Sbjct: 1096 LRLDGTTKSEDRAMLLKKFNEEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQD 1155
Query: 1432 EQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGK 1483
QA RAHRIGQ+ EV+V+ + +V +KI + K + ++ G D + +
Sbjct: 1156 LQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER 1215
Query: 1484 DRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 1543
++ +I N+++ ++ DE +N Q E L + D +R +E
Sbjct: 1216 RAFLQAILEHEEQNMEEDEVP-DDETLN-----QMIARNEDEFELFMRM-DLDRRREDAR 1268
Query: 1544 DV---PSLQEVNRM---IARSEDEVELFDQMDEE 1571
+ P L E + + I + + EVE +EE
Sbjct: 1269 NPKRKPRLMEEDELPSWILKDDAEVERLTCEEEE 1302
Score = 100 (40.3 bits), Expect = 5.7e-113, Sum P(3) = 5.7e-113
Identities = 38/133 (28%), Positives = 63/133 (47%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H +I +
Sbjct: 423 RQTLREARMTEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSISGKIQKLS 480
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ +A +H RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 481 KAIATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 532
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 533 --LQQTDEYVANL 543
Score = 64 (27.6 bits), Expect = 5.7e-113, Sum P(3) = 5.7e-113
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 467 MPQQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
M QQ G F+ QL L+AQILA++ L +G+ LP+ L A+
Sbjct: 164 MGQQARGQSAFSPVQLQQLRAQILAYKILGRGQ-PLPENLQLAV 206
Score = 51 (23.0 bits), Expect = 1.3e-111, Sum P(3) = 1.3e-111
Identities = 33/142 (23%), Positives = 51/142 (35%)
Query: 304 SNMGAPSSPVPVSKQQVTSP--TIAGENSPHANXXXXXXXXXXXAKAR---PTVSPSPLG 358
S MG P SP+ Q SP + G+ H ++ P + P G
Sbjct: 104 SGMGPPQSPMDQHSQGYMSPHPSPMGQVPEHVPSPMSGGGPTPPQMSQGQSPMMPMDPQG 163
Query: 359 STTSAAXXXXXXXISLQQ-------FSVHGRDNQVPSRQPVAI-GN-GLPPIHPPQTSLN 409
A + LQQ + + GR +P +A+ G LP + Q +N
Sbjct: 164 MGQQARGQSAFSPVQLQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQ--QQPVN 221
Query: 410 MTPGVDQP-LPVKNSSGPENSQ 430
P P +P+ + GP + Q
Sbjct: 222 TGPFNRPPGMPMPHG-GPASGQ 242
Score = 37 (18.1 bits), Expect = 4.0e-110, Sum P(3) = 4.0e-110
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 212 QVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSI 250
Q+S + P Q +G Q + P+Q Q + I
Sbjct: 148 QMSQGQSPMMPMDPQGMGQQARGQSAFSPVQLQQLRAQI 186
Score = 37 (18.1 bits), Expect = 2.4e-106, Sum P(3) = 2.4e-106
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++ + +MA + YRK + + +R+ + Q QT +
Sbjct: 504 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDE 538
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 1065 (380.0 bits), Expect = 9.4e-113, Sum P(3) = 9.4e-113
Identities = 269/685 (39%), Positives = 382/685 (55%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ + A ++V + + + R GS YY++AHA++ERV +Q ++L GT
Sbjct: 669 VSEKDAKQIIETAKQDV--DDEYSMQYSAR-GSQ--SYYTVAHAISERVEKQSALLINGT 723
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP+LIIVP +
Sbjct: 724 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 783
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K
Sbjct: 784 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAK 842
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 843 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 902
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 903 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 957
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 958 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 1010
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 1011 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1070
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1071 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1130
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1131 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1190
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1191 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1244
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1245 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1303
Query: 1572 FGWIEEMTR---YDQV---PKWLRA 1590
FG R Y +WLRA
Sbjct: 1304 FGRGSRQRRDVDYSDALTEKQWLRA 1328
Score = 99 (39.9 bits), Expect = 9.4e-113, Sum P(3) = 9.4e-113
Identities = 38/133 (28%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++ +
Sbjct: 420 RQTLREARMTEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 477
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA +H RE K + +RM L D E YR+ L++Q+ R A L
Sbjct: 478 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD------RRLAYL- 529
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 530 --LQQTDEYVANL 540
Score = 71 (30.1 bits), Expect = 9.4e-113, Sum P(3) = 9.4e-113
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 174 FSPVQLHQLRAQILAYKMLARGQ-PLPETLQLAV 206
Score = 61 (26.5 bits), Expect = 1.1e-112, Sum P(4) = 1.1e-112
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMA-ANIIRP 240
+Q + ++Q +Q QQQ Q+ + +PP QT Q A N RP
Sbjct: 218 QQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRP 262
Score = 49 (22.3 bits), Expect = 1.1e-112, Sum P(4) = 1.1e-112
Identities = 17/59 (28%), Positives = 22/59 (37%)
Query: 387 PSRQPVAIGNGLPPIHPP---QTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSP 442
P + PV G P PP Q PG P P P +Q ++ +R SP
Sbjct: 275 PQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPV---LQLQQKQSRISP 330
Score = 48 (22.0 bits), Expect = 2.5e-110, Sum P(3) = 2.5e-110
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 391 PVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQL 437
P++ G PP PP + PG Q + N GP L QL
Sbjct: 137 PMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNR-GPSPFSPVQLHQL 182
Score = 42 (19.8 bits), Expect = 1.1e-110, Sum P(4) = 1.1e-110
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 202 GEKQMEQPQQQVSDQKGEPKPPSQQ 226
G +Q +Q QQQ Q+ + + QQ
Sbjct: 214 GLQQQQQQQQQQQQQQQQQQQQQQQ 238
Score = 37 (18.1 bits), Expect = 3.4e-106, Sum P(4) = 3.4e-106
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++ + +MA + YRK + + +R+ + Q QT +
Sbjct: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQ-QTDE 535
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 1057 (377.1 bits), Expect = 1.2e-112, Sum P(3) = 1.2e-112
Identities = 252/622 (40%), Positives = 351/622 (56%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
Q+ EV+V+ + +V +KI + K + ++ G D + + ++ + ++
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAIL 1251
Query: 1495 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV--PSLQEVN 1552
+ Q + DEV + +Q E L + + R +E + P L E +
Sbjct: 1252 EHEEQD---EEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED 1308
Query: 1553 RM---IARSEDEVELFDQMDEE 1571
+ I + + EVE +EE
Sbjct: 1309 ELPSWIIKDDAEVERLTCEEEE 1330
Score = 105 (42.0 bits), Expect = 1.2e-112, Sum P(3) = 1.2e-112
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 444 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLT 501
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 502 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 553
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 554 --LQQTDEYVANL 564
Score = 75 (31.5 bits), Expect = 1.2e-112, Sum P(3) = 1.2e-112
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 469 QQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QQ G F ++QLH L+AQI+A++ L +G+ LP L A+
Sbjct: 164 QQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAV 204
Score = 56 (24.8 bits), Expect = 1.2e-110, Sum P(3) = 1.2e-110
Identities = 27/118 (22%), Positives = 42/118 (35%)
Query: 304 SNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPL-GSTTS 362
+ MG P SP+ Q SP + G S HA+ + +PL G+
Sbjct: 104 AGMGPPPSPMDQHSQGYPSP-LGG--SEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQ 160
Query: 363 AAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPP-IHPPQTSLNMTPGVDQPLP 419
A Q +H Q+ + + +A G LP + PG+ Q +P
Sbjct: 161 ALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMP 218
Score = 54 (24.1 bits), Expect = 2.9e-110, Sum P(4) = 2.9e-110
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPV 420
PS P A+ P+ PPQT +PG QP P+
Sbjct: 311 PSPAPPAVPPAASPVMPPQTQ---SPGQPAQPAPM 342
Score = 42 (19.8 bits), Expect = 3.6e-109, Sum P(3) = 3.6e-109
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 390 QPVAIGNGLPPIHPPQTSLNMTPGVDQP 417
QP + PP PP S M P P
Sbjct: 306 QPTGRPSPAPPAVPPAASPVMPPQTQSP 333
Score = 39 (18.8 bits), Expect = 2.9e-110, Sum P(4) = 2.9e-110
Identities = 17/61 (27%), Positives = 19/61 (31%)
Query: 299 HKANESNMGAPS-SPVP--VSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
H NM P S VP + Q P P AN +PT PS
Sbjct: 253 HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPS 312
Query: 356 P 356
P
Sbjct: 313 P 313
Score = 39 (18.8 bits), Expect = 1.1e-105, Sum P(3) = 1.1e-105
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 542 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 584
Score = 38 (18.4 bits), Expect = 1.4e-105, Sum P(3) = 1.4e-105
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 582
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 1061 (378.5 bits), Expect = 2.1e-112, Sum P(5) = 2.1e-112
Identities = 268/685 (39%), Positives = 378/685 (55%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ R A ++V + M GS YY++AHA++ERV +Q ++L GT
Sbjct: 676 VSEKDARQIIETAKQDV---DDEYSMQYSARGSQ--SYYTVAHAISERVEKQSALLINGT 730
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMG GKT+Q +ALI YLME KG GP+LIIVP +
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITYLMEHKGLNGPYLIIVPLS 790
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PS I Y G R L Q + + KFN L+TTYE+I+ D+ L+K
Sbjct: 791 TLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQ-LRSGKFNALLTTYEYIIKDKHILAK 849
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 850 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 909
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 910 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 964
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 965 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 1017
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 1018 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1077
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1078 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1137
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1138 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1197
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1198 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1251
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1252 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1310
Query: 1572 FGWIEEMTR---YDQV---PKWLRA 1590
FG R Y +WLRA
Sbjct: 1311 FGRGSRQRRDVDYSDALTEKQWLRA 1335
Score = 99 (39.9 bits), Expect = 2.1e-112, Sum P(5) = 2.1e-112
Identities = 38/133 (28%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++ +
Sbjct: 427 RQTLREARMTEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 484
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA +H RE K + +RM L D E YR+ L++Q+ R A L
Sbjct: 485 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRK-LIDQKKD------RRLAYL- 536
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 537 --LQQTDEYVANL 547
Score = 71 (30.1 bits), Expect = 2.1e-112, Sum P(5) = 2.1e-112
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 174 FSPVQLHQLRAQILAYKMLARGQ-PLPETLQLAV 206
Score = 60 (26.2 bits), Expect = 2.9e-111, Sum P(5) = 2.9e-111
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQT 227
++Q +Q QQQ Q +P+ P QQT
Sbjct: 220 QQQQQQQQQQQQQQPQQPQQPQQQT 244
Score = 48 (22.0 bits), Expect = 5.2e-110, Sum P(5) = 5.2e-110
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 197 EQFGRGEKQMEQPQQ-QVSDQKGEPKPPSQQ 226
+Q + ++Q +QPQQ Q Q+ + +P QQ
Sbjct: 222 QQQQQQQQQQQQPQQPQQPQQQTQAQPQQQQ 252
Score = 46 (21.3 bits), Expect = 8.4e-110, Sum P(5) = 8.4e-110
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQ 226
+Q + ++Q +QPQQ + +P+ QQ
Sbjct: 225 QQQQQQQQQPQQPQQPQQQTQAQPQQQQQQ 254
Score = 44 (20.5 bits), Expect = 1.4e-109, Sum P(5) = 1.4e-109
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 391 PVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQL 437
P++ G PP PP + PG Q + + GP L QL
Sbjct: 137 PISGGGPTPPQMPPSQPGTLIPGDLQAMN-QPDRGPSPFSPVQLHQL 182
Score = 43 (20.2 bits), Expect = 1.7e-109, Sum P(5) = 1.7e-109
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 204 KQMEQPQQQVSDQKGEPKPPSQQ 226
+Q +QPQQQ Q + + QQ
Sbjct: 235 QQPQQPQQQTQAQPQQQQQQQQQ 257
Score = 42 (19.8 bits), Expect = 2.1e-112, Sum P(5) = 2.1e-112
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1624 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 1656
E R G KGKK PN + + ++ S+ DE
Sbjct: 1553 EKGRDTG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1585
Score = 42 (19.8 bits), Expect = 2.1e-112, Sum P(5) = 2.1e-112
Identities = 19/88 (21%), Positives = 35/88 (39%)
Query: 1848 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 1905
A+ + E ++ ESN ++ E S++ KI K TG+ P G
Sbjct: 1509 ARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRG 1568
Query: 1906 HTEDAADHF---KESWDGKIANASGSSN 1930
+ F +E + + + ASG+ +
Sbjct: 1569 KAKPVVSDFDSDEEQDENEQSEASGTDD 1596
Score = 41 (19.5 bits), Expect = 2.8e-109, Sum P(4) = 2.8e-109
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
++ QPQQQ Q+ P S G G ++ Q Q + S
Sbjct: 242 QQTQAQPQQQQQQQQQPPTLVSYNRPSGPGQ--ELLMTAQNTQRKLS 286
Score = 39 (18.8 bits), Expect = 3.9e-106, Sum P(4) = 3.9e-106
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRK 822
+ QQQQ+ +Q ++ + + Q+ + Q Q Q+ +++Q ++ + +
Sbjct: 215 IQQQQQQQQQQQQQQQQQQPQ--QPQQPQQQTQAQPQQQQQQQQQPPTLVSYNR 266
Score = 37 (18.1 bits), Expect = 2.1e-112, Sum P(5) = 2.1e-112
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 556 VSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQ 614
+++ N Q K A A + + +P T P P V Q +PV ++ Q
Sbjct: 276 MTAQNTQR--KLSAPAPSGRPSPAPPAATQPTATAVPGPSVQEPAPGQPSPVLQLQQKQ 332
Score = 37 (18.1 bits), Expect = 6.1e-106, Sum P(5) = 6.1e-106
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
++ + +MA + YRK + + +R+ + Q QT +
Sbjct: 508 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQ-QTDE 542
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 1040 (371.2 bits), Expect = 1.1e-110, Sum P(3) = 1.1e-110
Identities = 268/698 (38%), Positives = 379/698 (54%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 720 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 779
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 780 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 838
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 839 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 898
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 899 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 953
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 954 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1013
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1014 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1066
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1067 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1126
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R ++ FN S+ FI LLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1127 R-GMLLTFNEPGSEYFI-LLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1184
Query: 1443 QKREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
Q+ EV+V+ + +V +KI + K + ++ G D + + ++ + ++
Sbjct: 1185 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAIL 1241
Query: 1495 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV--PSLQEVN 1552
+ Q + DEV + +Q E L + + R +E + P L E +
Sbjct: 1242 EHEEQD---EEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED 1298
Query: 1553 RM---IARSEDEVELFDQMDEE---FG----WIEEMTRYDQVPK--WLRASTKEVNATIA 1600
+ I + + EVE +EE FG +E+ D + + WL+A + I
Sbjct: 1299 ELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIE 1358
Query: 1601 N--LSKKPSKNILFGSNIGVDSGEIETE-RKRGPKGKK 1635
KK S+ S+ G + T R + + KK
Sbjct: 1359 EEVRQKKSSRKRKRDSDAGPSTPTTSTRSRDKDDESKK 1396
Score = 105 (42.0 bits), Expect = 1.1e-110, Sum P(3) = 1.1e-110
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIRDARTARN 839
RQ + R+ E+ +E ++++ +K ++ Q L SI Q K E H ++
Sbjct: 436 RQSLREARITEK--LEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLT 493
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
+ VA YH RE K + +RM L D E YR+ L++Q+ +R A L
Sbjct: 494 KAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK-LIDQKKD------KRLAYL- 545
Query: 900 SFLTQTEEYLYKL 912
L QT+EY+ L
Sbjct: 546 --LQQTDEYVANL 556
Score = 75 (31.5 bits), Expect = 1.1e-110, Sum P(3) = 1.1e-110
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 469 QQRLG---FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
QQ G F ++QLH L+AQI+A++ L +G+ LP L A+
Sbjct: 164 QQNRGPTPFNQNQLHQLRAQIMAYKMLARGQ-PLPDHLQMAV 204
Score = 62 (26.9 bits), Expect = 2.7e-109, Sum P(3) = 2.7e-109
Identities = 34/134 (25%), Positives = 46/134 (34%)
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAK 347
+P MQ ++ A + S G SP P + G N P
Sbjct: 210 MPGMQPQMPALPPPSVSATGPGPSPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPP 269
Query: 348 ARPTVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
P P P G +AA S Q + + PS P A+ P+ PPQT
Sbjct: 270 GGPP-KPWPEGPMANAAAPT-----STPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQ 323
Query: 408 LNMTPGVD-QPLPV 420
+PG QP P+
Sbjct: 324 ---SPGQPAQPAPM 334
Score = 51 (23.0 bits), Expect = 3.8e-108, Sum P(3) = 3.8e-108
Identities = 27/130 (20%), Positives = 44/130 (33%)
Query: 292 QSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPT 351
Q + + + MG P SP+ Q SP + G S HA+ +
Sbjct: 92 QMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSP-LGG--SEHASSPVPASGPSSGPQMSSG 148
Query: 352 VSPSPL-GSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPP-IHPPQTSLN 409
+PL G+ A Q +H Q+ + + +A G LP +
Sbjct: 149 PGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKR 208
Query: 410 MTPGVDQPLP 419
PG+ +P
Sbjct: 209 PMPGMQPQMP 218
Score = 39 (18.8 bits), Expect = 1.0e-103, Sum P(3) = 1.0e-103
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLK 815
+DQ++ + +A +Q ++V EL+RQ + +Q A +K+ K
Sbjct: 534 IDQKKDKRLAYLLQQTDEYVA----NLTELVRQHKAAQVAKEKKKKK 576
Score = 38 (18.4 bits), Expect = 1.3e-103, Sum P(3) = 1.3e-103
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ------KAMREKQLKSISQWRKK 823
++ + +MA + YRK + + +R+ + Q QT + + +R+ + +++ +KK
Sbjct: 517 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ-QTDEYVANLTELVRQHKAAQVAKEKKK 574
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 1065 (380.0 bits), Expect = 2.3e-109, Sum P(4) = 2.3e-109
Identities = 269/685 (39%), Positives = 382/685 (55%)
Query: 941 LSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT 1000
+SE++ + A ++V + + + R GS YY++AHA++ERV +Q ++L GT
Sbjct: 653 VSEKDAKQIIETAKQDV--DDEYSMQYSAR-GSQ--SYYTVAHAISERVEKQSALLINGT 707
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP+LIIVP +
Sbjct: 708 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 767
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
L NW E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K
Sbjct: 768 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAK 826
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+ WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +
Sbjct: 827 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI 886
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 887 FKSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 941
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M
Sbjct: 942 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIM 994
Query: 1300 ELRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348
+LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVL
Sbjct: 995 QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL 1054
Query: 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
LF MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1055 LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG 1114
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 1464
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1115 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1174
Query: 1465 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 1520
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1175 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIA 1228
Query: 1521 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE--- 1571
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1229 RREEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKI 1287
Query: 1572 FGWIEEMTR---YDQV---PKWLRA 1590
FG R Y +WLRA
Sbjct: 1288 FGRGSRQRRDVDYSDALTEKQWLRA 1312
Score = 71 (30.1 bits), Expect = 2.3e-109, Sum P(4) = 2.3e-109
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
F+ QLH L+AQILA++ L +G+ LP+ L A+
Sbjct: 174 FSPVQLHQLRAQILAYKMLARGQ-PLPETLQLAV 206
Score = 57 (25.1 bits), Expect = 2.3e-109, Sum P(4) = 2.3e-109
Identities = 32/136 (23%), Positives = 58/136 (42%)
Query: 782 RQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTA---- 837
RQ + R+ E+ +E ++++ +K ++ Q+ R W+ R A
Sbjct: 403 RQTLREARMTEK--LEKQQKIEQERKRRQKHQVPGALMGRLPKQATGWSQNHLRKAGFLE 460
Query: 838 RN-RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYA 896
+N RG + + + S D R++ + D E YR+ L++Q+ R A
Sbjct: 461 QNPRGEGTWKSNLSSKQSNLSDSTEKDRLQMAE--DEEGYRK-LIDQKKD------RRLA 511
Query: 897 VLSSFLTQTEEYLYKL 912
L L QT+EY+ L
Sbjct: 512 YL---LQQTDEYVANL 524
Score = 53 (23.7 bits), Expect = 1.7e-107, Sum P(4) = 1.7e-107
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 391 PVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQL 437
P++ G PP PP + PG Q + N GP L QL
Sbjct: 137 PISGGGPTPPQMPPSQPGTLIPGDPQAMSQSNR-GPSPFSPVQLHQL 182
Score = 49 (22.3 bits), Expect = 1.2e-106, Sum P(4) = 1.2e-106
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 461 GGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQEL 503
G L ++P+Q G++++ H+ KA L + +GEGT L
Sbjct: 435 GALMGRLPKQATGWSQN--HLRKAGFL--EQNPRGEGTWKSNL 473
Score = 47 (21.6 bits), Expect = 3.1e-107, Sum P(5) = 3.1e-107
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSP 442
P + PV +G P PP + V P + + G + +Q ++ +R SP
Sbjct: 258 PQKLPVPAPSGRPSPAPPAAAPPPAAAVPGPSVPQPAPGQPSPILQLQQKQSRISP 313
Score = 45 (20.9 bits), Expect = 2.3e-109, Sum P(4) = 2.3e-109
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 1624 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 1656
E R +G KGKK PN + + ++ S+ DE
Sbjct: 1512 EKGRDKG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1544
Score = 40 (19.1 bits), Expect = 7.5e-109, Sum P(4) = 7.5e-109
Identities = 19/88 (21%), Positives = 34/88 (38%)
Query: 1848 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 1905
A+ + E ++ ESN ++ E S+S KI K G+ P G
Sbjct: 1468 ARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRG 1527
Query: 1906 HTEDAADHF---KESWDGKIANASGSSN 1930
+ F +E + + + ASG+ +
Sbjct: 1528 KAKPVVSDFDSDEEQDENEQSEASGTDD 1555
Score = 39 (18.8 bits), Expect = 3.1e-107, Sum P(5) = 3.1e-107
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQ 226
Q +QP Q Q +P+ P QQ
Sbjct: 216 QQQQPPPQSQPQL-QPQQPQQQ 236
Score = 38 (18.4 bits), Expect = 2.2e-107, Sum P(4) = 2.2e-107
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 792 ERQRVELMRQVQTSQKAMREKQLKSISQWRKK 823
+R + + +R+ + ++K EKQ K I Q RK+
Sbjct: 399 KRSKRQTLREARMTEKL--EKQQK-IEQERKR 427
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 1052 (375.4 bits), Expect = 8.8e-108, Sum P(2) = 8.8e-108
Identities = 332/1134 (29%), Positives = 534/1134 (47%)
Query: 815 KSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSK-RKD-----DDRNKRM--E 866
++I + R+K+ H+ + T R ++H+R + +K RK + NKR+ E
Sbjct: 177 RAILEKRRKVTNFHFL--QSLTKHAREFKEFHKRNMLNHTKVRKSMQQYITNENKRIARE 234
Query: 867 ALKNNDVERYREMLLEQQTSIPGDAAERYAV-LSSFLTQTEEYLYKLGSKITXXXXXXXX 925
+KN + R ++++ E + E+ L L QT++Y+ L +
Sbjct: 235 EMKN-EKNRIQKLIQEDEEGYRAMLDEKKDQRLVYLLEQTDDYIKSL-CDLLKQQQNATA 292
Query: 926 XXXXXXXXXXXRLQGLSEEE-VRSAAACA-GEEVMIRNRFLEMNAPRDGSSVNKYYSLAH 983
G++EE+ V+S A ++ N+ +MN + YY+ AH
Sbjct: 293 GSLATKSYIRKEYDGVAEEDKVKSILDKARNDDDEYENK-TKMN-------IEDYYTTAH 344
Query: 984 AVNERVMRQPSMLRAGT----LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL 1039
V E + Q M+ G L+ YQI GL+WM+SL+NN LNGILADEMGLGKT+Q +A
Sbjct: 345 GVREEIKEQHFMMGGGNPSLKLKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAF 404
Query: 1040 IAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099
I YLME K GP L+IVP + + NW++E KW +V I Y G K+ R ++F + +
Sbjct: 405 ITYLMEIKKTSGPFLVIVPLSTVPNWQNEFDKWAANVHLIAYKGPKETR-KVFEPIIKSG 463
Query: 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTG 1158
KFNVL+TT+E+++ +++ L K+ WKY+IIDE R+K++ L L+ R++CQRRLL+TG
Sbjct: 464 KFNVLLTTFEYVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITG 523
Query: 1159 TPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218
TPLQN P +F + F WF+ PF G L E+ ++II
Sbjct: 524 TPLQNKLPELWALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVE-----LTQEETMLIIR 578
Query: 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR 1278
RLH++L PF+LRR ++VE LP K+ V+RC MSA+Q +Y ++ G L D K
Sbjct: 579 RLHKVLRPFLLRRLKKEVESELPDKMEFVVRCDMSALQKVLYKHMQK-GLLL----DGKT 633
Query: 1279 RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------LVKSCG 1328
K+L N + LRK CNHP L + + ++F L + G
Sbjct: 634 NTGS---------KSLRNTMIHLRKLCNHPFL-FENVEESCRNFWDARFISAVDLYRVSG 683
Query: 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388
KL +L RIL KLQ TGHRVL+F MT ++ I+E++L + Y R+DG+T ++R + +
Sbjct: 684 KLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPDERGALLD 743
Query: 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448
FN+ +S+ F+F+LS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQK EV+
Sbjct: 744 KFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVR 803
Query: 1449 VIYMEAVVDKISSHQKEDELRSGGTVDLEDD----LAGK--DRYIGSIEGLIRNNI--QQ 1500
V + I+++ E+++ + L D AGK +R G+ I NI +
Sbjct: 804 VFRL------ITANSVEEKILAAARYKLNVDEKVIQAGKFDNRSTGAERREILENIIKTE 857
Query: 1501 YKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQ-ETVHDV-PSL---QEVNRMI 1555
+ + +EV N + + E L + D+ER++ E P L E+ R I
Sbjct: 858 NESEEDEEVPNDEDINDILSRSEEEFELFQKM-DQERFENEQAQKAKPRLVGEDEIPRDI 916
Query: 1556 ARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSN 1615
R+ DE + ++ EE G + Y +V R + +EV+ + +S LF +
Sbjct: 917 LRAADETDYIEKAKEE-GRVP----YLEVMPGSRRTRREVDYSADTMSDDKFLEKLFDED 971
Query: 1616 IGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDER-NGYPVQXXXXXXXXXXX 1674
D+ TE + P P V + + D + + P
Sbjct: 972 ---DTTSARTEEEPNPA---QPGPSSVSISLESSCDTQKDIKVDDVPAPPLTFKVPRLTI 1025
Query: 1675 XXYSGAVGAPLSNKDQSEEDGPVC--EGGY---DYLRPSENTRNNHVVEEAXXXXXXXXX 1729
G N+ +S+ D E + D+ + E + +E
Sbjct: 1026 KL-GGDEKKRKHNRSESDSDDNSLKKEKKHRKEDHPKEKEKEKKKEKEQEKSTDSEKDLK 1084
Query: 1730 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHD 1789
R++ + + KF + + R + + ++G H S
Sbjct: 1085 RKIEAPIEKIRI-KFSGEPSEKYRKINEEPPKKEHRDKGRKEEKSHKHRSDDDDSSPKKK 1143
Query: 1790 RDEGEDEQVLQPKIKRKR----SIRVRPRHTVERPEERSCTDTPLHRGDSSL-LPFQMDN 1844
+ DE + K K K ++++R + +E+S + +G S+ L D
Sbjct: 1144 KHRDSDESSEKKKKKHKHDSDSALKLREGSPLSVDKEKSPMKIRIGQGQPSISLAANEDK 1203
Query: 1845 KYPA-QLRTDTEMKAHG-ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
+P +L+ + + E++ + D+ EP + ++ K + K + K
Sbjct: 1204 NHPPIKLKLNVKFNMPSQETDGSKKDKKEPHKEKEKDKEKEKEEDKGKEKEKHK 1257
Score = 523 (189.2 bits), Expect = 5.2e-45, Sum P(2) = 5.2e-45
Identities = 131/390 (33%), Positives = 206/390 (52%)
Query: 812 KQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNN 871
K + ++ K+ + H +R + + + ++RI RE K +++N R++ L
Sbjct: 197 KHAREFKEFHKRNMLNHTKVRKSM---QQYITNENKRIAREEMK---NEKN-RIQKLIQE 249
Query: 872 DVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXX 931
D E YR ML E++ +R L L QT++Y+ L +
Sbjct: 250 DEEGYRAMLDEKKD-------QRLVYL---LEQTDDYIKSL-CDLLKQQQNATAGSLATK 298
Query: 932 XXXXXRLQGLSEEE-VRSAAACA-GEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERV 989
G++EE+ V+S A ++ N+ +MN ++ + + + E+
Sbjct: 299 SYIRKEYDGVAEEDKVKSILDKARNDDDEYENK-TKMNIEDYYTTA---HGVREEIKEQH 354
Query: 990 MRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
+ L+ YQI GL+WM+SL+NN LNGILADEMGLGKT+Q +A I YLME K
Sbjct: 355 FMMGGGNPSLKLKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKT 414
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYE 1109
GP L+IVP + + NW++E KW +V I Y G K+ R ++F + + KFNVL+TT+E
Sbjct: 415 SGPFLVIVPLSTVPNWQNEFDKWAANVHLIAYKGPKETR-KVFEPIIKSGKFNVLLTTFE 473
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXX 1168
+++ +++ L K+ WKY+IIDE R+K++ L L+ R++CQRRLL+TGTPLQN
Sbjct: 474 YVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPEL 533
Query: 1169 XXXXXXXXPEVFDNRKAFHDWFSQPFQKEG 1198
P +F + F WF+ PF G
Sbjct: 534 WALLNFLLPSIFSSCSTFEQWFNAPFATTG 563
Score = 52 (23.4 bits), Expect = 8.8e-108, Sum P(2) = 8.8e-108
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1790 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT 1828
++E ED+ LQ K+ RK + + + R +E+ + S T T
Sbjct: 1291 KEEQEDDAKLQEKLARKAAKKEQKR--LEKEKSESSTGT 1327
Score = 48 (22.0 bits), Expect = 5.2e-45, Sum P(2) = 5.2e-45
Identities = 26/116 (22%), Positives = 50/116 (43%)
Query: 1761 MPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERP 1820
MP + +G + H + ++ + D+G++++ + K K K + + R E
Sbjct: 1218 MPSQETDGSKKDKKEPHKEKEKDKEKEKEEDKGKEKEKHKDKDKDKEH-KKKSRED-ETE 1275
Query: 1821 EERSCTDTPLHRGDSSLLPFQMDNKYP-AQLRTDTEMKA-HGESNSLRHDQSEPSS 1874
EER R ++ L Q + + A+L+ KA E L ++SE S+
Sbjct: 1276 EERRA------RKEAKRLKRQKEEQEDDAKLQEKLARKAAKKEQKRLEKEKSESST 1325
Score = 45 (20.9 bits), Expect = 9.0e-45, Sum P(3) = 9.0e-45
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDE 1561
K +M + + + D++ H+E+ E +++ ++ H + ++ +R EDE
Sbjct: 1215 KFNMPSQETDGSKKDKKEPHKEKEKDKEKEKEEDKGKEKEKHKDKDKDKEHKKKSR-EDE 1273
Query: 1562 VE 1563
E
Sbjct: 1274 TE 1275
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 1066 (380.3 bits), Expect = 2.3e-107, Sum P(3) = 2.3e-107
Identities = 290/853 (33%), Positives = 444/853 (52%)
Query: 838 RNRGVAKYHERILREFSKR------KDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDA 891
+N+ K E I+ FS R K DR R NN + + E+Q + A
Sbjct: 622 QNKKHGKTIEEII-SFSDRSSIKAVKKSDRLSRFMTKINNF---HNQTAKEEQKKLEKMA 677
Query: 892 AERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAA 951
+R L S E YL L +Q ++E + A
Sbjct: 678 KQRLQALKS--NDEEAYLKLLDHTKDTRITHLLEQTNQFLDSLALAVQS-QQKEAQDNLA 734
Query: 952 CAGEEVMIRNRFLEMNAPRDGSSVNK--YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGL 1009
+G I +E P D K YY++AH + E V +QPS+L GTL++YQ+ GL
Sbjct: 735 YSGRA--IEPASVE---PLDDEKREKIDYYNVAHRIKEEVTKQPSILVGGTLKEYQLKGL 789
Query: 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069
QWM+SL+NN LNGILADEMGLGKT+Q ++L+ YL+E K GP L+IVP + + NW E
Sbjct: 790 QWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEF 849
Query: 1070 HKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIID 1129
KW PS+ I Y G +QR ++ ++ F +++TT+E+++ D+ L ++ W ++IID
Sbjct: 850 EKWAPSIKKITYKGTPNQR-KVMQHDIRTGNFQLVLTTFEYVIKDKGLLGRIKWVHMIID 908
Query: 1130 EAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHD 1188
E RMK+ S L+ L + Y RL+LTGTPLQN+ P++F++ K+F +
Sbjct: 909 EGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDE 968
Query: 1189 WFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVL 1248
WF+ PF G D L E+ +++I RLH++L PF+LRR +DVE LP KV V+
Sbjct: 969 WFNTPFANTG---GQDKIELTEEETLLVIRRLHKVLRPFLLRRLKKDVEKDLPNKVEKVV 1025
Query: 1249 RCRMSAIQSAIYDWIKATGTLRV-DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307
+C+ SA+QS +Y + L DP + P+ K NN+ M+L+K CNH
Sbjct: 1026 KCKSSALQSKLYQQMLRYNMLYAGDPANGSV-----PV----TIKNANNQIMQLKKICNH 1076
Query: 1308 PLLNYPYFSDL------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 1361
P + Y +L + D + + GK +LD++L K + TGH+VL+F MT++++I+E
Sbjct: 1077 PFV-YEEVENLINPNIETNDQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIME 1135
Query: 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
++L++R + Y R+DG T +DR + FN+ DSD F FLLS RA G GLNLQ+ADTVII
Sbjct: 1136 DFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQTADTVII 1195
Query: 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLE-- 1477
+D D NP + QA RAHRIGQK EV+++ + E V+++ + +L G V
Sbjct: 1196 FDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1255
Query: 1478 -DDLAGKDRYIGSIEGLIRNNIQQYK---IDMADEVINAGRFDQRTTHEERRMTLETLLH 1533
D+ + + + LI ++ + D +E ++ +Q E + + +
Sbjct: 1256 FDNKSTAEEQEAMLRALIEKEDERRQKGGTDEEEEDLDDDELNQIIARNENELVVFRKM- 1314
Query: 1534 DEERYQETVH-DVPS---LQEVNRMIARSEDEVELFDQMD---EEFGWIEEMTRYDQVPK 1586
DEERY T + PS +E I + + E ELF + D EE+G R ++ +
Sbjct: 1315 DEERYLATKNAPYPSRLYTEEELPEIYKIDPE-ELFKKEDVASEEYG---RGARERKILQ 1370
Query: 1587 WLRASTKE--VNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKK--YPNYKEV 1642
+ T+E + +S N N+ + E+E + K+ PKG++ P V
Sbjct: 1371 YDDNLTEEQWLKKIEGMVSDDDDDNDDDDGNVDMSDSEMEAKPKK-PKGRRGRKPKVARV 1429
Query: 1643 DDEIGEYSEASSD 1655
+DE E S+ SD
Sbjct: 1430 EDE--E-SQTESD 1439
Score = 83 (34.3 bits), Expect = 2.3e-107, Sum P(3) = 2.3e-107
Identities = 45/205 (21%), Positives = 72/205 (35%)
Query: 466 QMPQQRLGFTKHQLHVLKAQILAFRRLKK----GEGTLPQELLRAIVXXXXXXXXXXXXX 521
Q P + FT Q +LK+Q+ AF+ + G+G +PQ L+ +
Sbjct: 213 QPPSPQSAFTNQQFQLLKSQLQAFKYFVRAPGQGQGQIPQNLIAYVSNPSSAMANDMYLP 272
Query: 522 XXXXXXVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPV 581
N DR Q+ + A+ N S ++ G +
Sbjct: 273 AVNRPQTNGMDRTM------QMPQSIPSQPQQYALQQQNDLSNSNPKSTGGTPEIPEKKK 326
Query: 582 GQGMSAVTKEPA-PVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKS---- 636
G+ K P P +EE+Q ++ K QE+E L++ FP G
Sbjct: 327 GK-RGPKPKNPKKPTKKQLREEEQR-LALEKQRQELEQNRLKSSAPQAFPPQAGLQGQAP 384
Query: 637 VAPQVSACDAVQVKKPAQATTALQP 661
PQ V +P A+T+ P
Sbjct: 385 FPPQPPQQSQQHVPQPPPASTSSIP 409
Score = 65 (27.9 bits), Expect = 6.2e-106, Sum P(2) = 6.2e-106
Identities = 56/265 (21%), Positives = 99/265 (37%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPM-QAAQHQQSIXXXXXXXXXXX 261
++Q +Q QQQ Q+ + + QQ Q + + P+ Q AQ Q
Sbjct: 57 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQSLNHSQQSPLLQNAQGQTPQQPPTPQQFSNF 116
Query: 262 XXXXXXXXERNIDLSQPA---NASLIAQLIPIMQSRIVANHKANESNMGAP-----SSPV 313
+ + + PA + S P++ + + K N A ++
Sbjct: 117 NQNGYNGQQFSSQVHSPAIGGSLSTSGHGTPLVTNANLMTGKKNTRTPNAQFGNQTAAGT 176
Query: 314 PVSKQQVTSPTIAGENS-PHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXI 372
P+ +QQ P G NS P N + + PSP + T+ +
Sbjct: 177 PLQQQQ-QQPFPHGNNSNPMLNQTAQQPPQSQ--QRQQNQPPSPQSAFTNQQFQLLKSQL 233
Query: 373 SLQQFSVH--GR-DNQVP-------SRQPVAIGNG--LPPIHPPQTS-LNMTPGVDQPLP 419
++ V G+ Q+P S A+ N LP ++ PQT+ ++ T + Q +P
Sbjct: 234 QAFKYFVRAPGQGQGQIPQNLIAYVSNPSSAMANDMYLPAVNRPQTNGMDRTMQMPQSIP 293
Query: 420 VKNSSGPENSQMQYLRQLNRSSPQS 444
S P+ +Q L+ S+P+S
Sbjct: 294 ----SQPQQYALQQQNDLSNSNPKS 314
Score = 51 (23.0 bits), Expect = 8.6e-104, Sum P(3) = 8.6e-104
Identities = 20/74 (27%), Positives = 25/74 (33%)
Query: 375 QQFSVHGRDNQVPSRQPVAIG-NGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQY 433
Q+ + + P P G G P PPQ V QP P SS P Q
Sbjct: 358 QELEQNRLKSSAPQAFPPQAGLQGQAPF-PPQPPQQSQQHVPQPPPASTSSIPPGGLPQS 416
Query: 434 LRQLNRSSPQSAIP 447
Q + Q + P
Sbjct: 417 QPQPQQQQQQPSRP 430
Score = 47 (21.6 bits), Expect = 4.9e-104, Sum P(2) = 4.9e-104
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 208 QPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
QP QQ +P P S ++ G+ + +P Q Q QQ
Sbjct: 388 QPPQQSQQHVPQPPPASTSSIPPGGLPQSQPQPQQ--QQQQ 426
Score = 42 (19.8 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMR--QVQTSQKAMREKQLKSISQ 819
QQQQ+ +Q ++ L Q+ L++ Q QT Q+ +Q + +Q
Sbjct: 68 QQQQQQQQQQQQQQQQQQSLNHSQQSPLLQNAQGQTPQQPPTPQQFSNFNQ 118
Score = 41 (19.5 bits), Expect = 2.3e-107, Sum P(3) = 2.3e-107
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 419 PVKNSSGPENSQMQYLRQLNRSSPQSA 445
P+ N + + Q Q +Q SPQSA
Sbjct: 194 PMLNQTAQQPPQSQQRQQNQPPSPQSA 220
Score = 39 (18.8 bits), Expect = 3.7e-107, Sum P(3) = 3.7e-107
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 202 GEKQMEQPQQQVSDQK--GEPKPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
G+K P Q +Q G P QQ G +N + A Q QS
Sbjct: 157 GKKNTRTPNAQFGNQTAAGTPLQQQQQQPFPHGNNSNPMLNQTAQQPPQS 206
Score = 39 (18.8 bits), Expect = 3.5e-103, Sum P(2) = 3.5e-103
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 786 KFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKK 823
KF+ + Q+ +Q Q Q+ +++Q + Q +++
Sbjct: 39 KFLNTLKMQQQRFQQQYQQQQQQQQQQQQQQQQQQQQQ 76
Score = 37 (18.1 bits), Expect = 5.6e-103, Sum P(2) = 5.6e-103
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 208 QPQQQVSDQKGEP--KPPSQQTL 228
QPQQQ Q P KP + Q L
Sbjct: 419 QPQQQ-QQQPSRPITKPATPQPL 440
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 1066 (380.3 bits), Expect = 2.3e-107, Sum P(3) = 2.3e-107
Identities = 290/853 (33%), Positives = 444/853 (52%)
Query: 838 RNRGVAKYHERILREFSKR------KDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDA 891
+N+ K E I+ FS R K DR R NN + + E+Q + A
Sbjct: 622 QNKKHGKTIEEII-SFSDRSSIKAVKKSDRLSRFMTKINNF---HNQTAKEEQKKLEKMA 677
Query: 892 AERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAA 951
+R L S E YL L +Q ++E + A
Sbjct: 678 KQRLQALKS--NDEEAYLKLLDHTKDTRITHLLEQTNQFLDSLALAVQS-QQKEAQDNLA 734
Query: 952 CAGEEVMIRNRFLEMNAPRDGSSVNK--YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGL 1009
+G I +E P D K YY++AH + E V +QPS+L GTL++YQ+ GL
Sbjct: 735 YSGRA--IEPASVE---PLDDEKREKIDYYNVAHRIKEEVTKQPSILVGGTLKEYQLKGL 789
Query: 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069
QWM+SL+NN LNGILADEMGLGKT+Q ++L+ YL+E K GP L+IVP + + NW E
Sbjct: 790 QWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEF 849
Query: 1070 HKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIID 1129
KW PS+ I Y G +QR ++ ++ F +++TT+E+++ D+ L ++ W ++IID
Sbjct: 850 EKWAPSIKKITYKGTPNQR-KVMQHDIRTGNFQLVLTTFEYVIKDKGLLGRIKWVHMIID 908
Query: 1130 EAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHD 1188
E RMK+ S L+ L + Y RL+LTGTPLQN+ P++F++ K+F +
Sbjct: 909 EGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDE 968
Query: 1189 WFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVL 1248
WF+ PF G D L E+ +++I RLH++L PF+LRR +DVE LP KV V+
Sbjct: 969 WFNTPFANTG---GQDKIELTEEETLLVIRRLHKVLRPFLLRRLKKDVEKDLPNKVEKVV 1025
Query: 1249 RCRMSAIQSAIYDWIKATGTLRV-DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307
+C+ SA+QS +Y + L DP + P+ K NN+ M+L+K CNH
Sbjct: 1026 KCKSSALQSKLYQQMLRYNMLYAGDPANGSV-----PV----TIKNANNQIMQLKKICNH 1076
Query: 1308 PLLNYPYFSDL------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 1361
P + Y +L + D + + GK +LD++L K + TGH+VL+F MT++++I+E
Sbjct: 1077 PFV-YEEVENLINPNIETNDQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIME 1135
Query: 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
++L++R + Y R+DG T +DR + FN+ DSD F FLLS RA G GLNLQ+ADTVII
Sbjct: 1136 DFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQTADTVII 1195
Query: 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLE-- 1477
+D D NP + QA RAHRIGQK EV+++ + E V+++ + +L G V
Sbjct: 1196 FDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1255
Query: 1478 -DDLAGKDRYIGSIEGLIRNNIQQYK---IDMADEVINAGRFDQRTTHEERRMTLETLLH 1533
D+ + + + LI ++ + D +E ++ +Q E + + +
Sbjct: 1256 FDNKSTAEEQEAMLRALIEKEDERRQKGGTDEEEEDLDDDELNQIIARNENELVVFRKM- 1314
Query: 1534 DEERYQETVH-DVPS---LQEVNRMIARSEDEVELFDQMD---EEFGWIEEMTRYDQVPK 1586
DEERY T + PS +E I + + E ELF + D EE+G R ++ +
Sbjct: 1315 DEERYLATKNAPYPSRLYTEEELPEIYKIDPE-ELFKKEDVASEEYG---RGARERKILQ 1370
Query: 1587 WLRASTKE--VNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKK--YPNYKEV 1642
+ T+E + +S N N+ + E+E + K+ PKG++ P V
Sbjct: 1371 YDDNLTEEQWLKKIEGMVSDDDDDNDDDDGNVDMSDSEMEAKPKK-PKGRRGRKPKVARV 1429
Query: 1643 DDEIGEYSEASSD 1655
+DE E S+ SD
Sbjct: 1430 EDE--E-SQTESD 1439
Score = 83 (34.3 bits), Expect = 2.3e-107, Sum P(3) = 2.3e-107
Identities = 45/205 (21%), Positives = 72/205 (35%)
Query: 466 QMPQQRLGFTKHQLHVLKAQILAFRRLKK----GEGTLPQELLRAIVXXXXXXXXXXXXX 521
Q P + FT Q +LK+Q+ AF+ + G+G +PQ L+ +
Sbjct: 213 QPPSPQSAFTNQQFQLLKSQLQAFKYFVRAPGQGQGQIPQNLIAYVSNPSSAMANDMYLP 272
Query: 522 XXXXXXVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPV 581
N DR Q+ + A+ N S ++ G +
Sbjct: 273 AVNRPQTNGMDRTM------QMPQSIPSQPQQYALQQQNDLSNSNPKSTGGTPEIPEKKK 326
Query: 582 GQGMSAVTKEPA-PVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKS---- 636
G+ K P P +EE+Q ++ K QE+E L++ FP G
Sbjct: 327 GK-RGPKPKNPKKPTKKQLREEEQR-LALEKQRQELEQNRLKSSAPQAFPPQAGLQGQAP 384
Query: 637 VAPQVSACDAVQVKKPAQATTALQP 661
PQ V +P A+T+ P
Sbjct: 385 FPPQPPQQSQQHVPQPPPASTSSIP 409
Score = 65 (27.9 bits), Expect = 6.2e-106, Sum P(2) = 6.2e-106
Identities = 56/265 (21%), Positives = 99/265 (37%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPM-QAAQHQQSIXXXXXXXXXXX 261
++Q +Q QQQ Q+ + + QQ Q + + P+ Q AQ Q
Sbjct: 57 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQSLNHSQQSPLLQNAQGQTPQQPPTPQQFSNF 116
Query: 262 XXXXXXXXERNIDLSQPA---NASLIAQLIPIMQSRIVANHKANESNMGAP-----SSPV 313
+ + + PA + S P++ + + K N A ++
Sbjct: 117 NQNGYNGQQFSSQVHSPAIGGSLSTSGHGTPLVTNANLMTGKKNTRTPNAQFGNQTAAGT 176
Query: 314 PVSKQQVTSPTIAGENS-PHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXI 372
P+ +QQ P G NS P N + + PSP + T+ +
Sbjct: 177 PLQQQQ-QQPFPHGNNSNPMLNQTAQQPPQSQ--QRQQNQPPSPQSAFTNQQFQLLKSQL 233
Query: 373 SLQQFSVH--GR-DNQVP-------SRQPVAIGNG--LPPIHPPQTS-LNMTPGVDQPLP 419
++ V G+ Q+P S A+ N LP ++ PQT+ ++ T + Q +P
Sbjct: 234 QAFKYFVRAPGQGQGQIPQNLIAYVSNPSSAMANDMYLPAVNRPQTNGMDRTMQMPQSIP 293
Query: 420 VKNSSGPENSQMQYLRQLNRSSPQS 444
S P+ +Q L+ S+P+S
Sbjct: 294 ----SQPQQYALQQQNDLSNSNPKS 314
Score = 51 (23.0 bits), Expect = 8.6e-104, Sum P(3) = 8.6e-104
Identities = 20/74 (27%), Positives = 25/74 (33%)
Query: 375 QQFSVHGRDNQVPSRQPVAIG-NGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQY 433
Q+ + + P P G G P PPQ V QP P SS P Q
Sbjct: 358 QELEQNRLKSSAPQAFPPQAGLQGQAPF-PPQPPQQSQQHVPQPPPASTSSIPPGGLPQS 416
Query: 434 LRQLNRSSPQSAIP 447
Q + Q + P
Sbjct: 417 QPQPQQQQQQPSRP 430
Score = 47 (21.6 bits), Expect = 4.9e-104, Sum P(2) = 4.9e-104
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 208 QPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
QP QQ +P P S ++ G+ + +P Q Q QQ
Sbjct: 388 QPPQQSQQHVPQPPPASTSSIPPGGLPQSQPQPQQ--QQQQ 426
Score = 42 (19.8 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMR--QVQTSQKAMREKQLKSISQ 819
QQQQ+ +Q ++ L Q+ L++ Q QT Q+ +Q + +Q
Sbjct: 68 QQQQQQQQQQQQQQQQQQSLNHSQQSPLLQNAQGQTPQQPPTPQQFSNFNQ 118
Score = 41 (19.5 bits), Expect = 2.3e-107, Sum P(3) = 2.3e-107
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 419 PVKNSSGPENSQMQYLRQLNRSSPQSA 445
P+ N + + Q Q +Q SPQSA
Sbjct: 194 PMLNQTAQQPPQSQQRQQNQPPSPQSA 220
Score = 39 (18.8 bits), Expect = 3.7e-107, Sum P(3) = 3.7e-107
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 202 GEKQMEQPQQQVSDQK--GEPKPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
G+K P Q +Q G P QQ G +N + A Q QS
Sbjct: 157 GKKNTRTPNAQFGNQTAAGTPLQQQQQQPFPHGNNSNPMLNQTAQQPPQS 206
Score = 39 (18.8 bits), Expect = 3.5e-103, Sum P(2) = 3.5e-103
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 786 KFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKK 823
KF+ + Q+ +Q Q Q+ +++Q + Q +++
Sbjct: 39 KFLNTLKMQQQRFQQQYQQQQQQQQQQQQQQQQQQQQQ 76
Score = 37 (18.1 bits), Expect = 5.6e-103, Sum P(2) = 5.6e-103
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 208 QPQQQVSDQKGEP--KPPSQQTL 228
QPQQQ Q P KP + Q L
Sbjct: 419 QPQQQ-QQQPSRPITKPATPQPL 440
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 1044 (372.6 bits), Expect = 4.2e-105, Sum P(3) = 4.2e-105
Identities = 296/894 (33%), Positives = 463/894 (51%)
Query: 792 ERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLEAHWAIR-DARTARNRGVAKYHER 848
ER++ E+ + QK M+E + +++ +K + + D + + H+
Sbjct: 326 ERKKDEIRNEKLRMQKLMQEDEEGYRALLDEKKDQRLVYLLQQTDEYVDSLCSLVRQHQN 385
Query: 849 ILREFSKRKDDDRNKRMEALKNNDV-ERYREMLLEQQT--SIPGDAAERYAVLSSFLTQT 905
E K+K+D K++E K N + E R + E+ T ++ GD A + + +L
Sbjct: 386 T--EKKKKKED---KKIE--KGNQMDEEARVHVRERSTGKALTGDQAPKTEEIEFWLETH 438
Query: 906 EEYLYKLGSKITXXXXXXXXXXXXX-XXXXXXRLQGLSEEEVRSAAACAGEEVMIRNRFL 964
EY +++ + G+ EE + A E+ RN
Sbjct: 439 PEYEIVPRDQLSDDEEEEEEEAPVEPEEEKDDQYAGMDEE---TKAKMILEKA--RNEED 493
Query: 965 EMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGT----LRDYQIVGLQWMLSLYNNKL 1020
E + + + YY+ AH + E+V++Q + + G L+ YQI GL+WM+SLYNN L
Sbjct: 494 EYDQ-KTKKQMADYYATAHKIKEKVVKQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNL 552
Query: 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIY 1080
NGILADEMGLGKT+Q ++L+ YLME K N GP+L+IVP + L NW++E KW PSV+ I
Sbjct: 553 NGILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLSTLSNWQNEFAKWAPSVTTII 612
Query: 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140
Y G KD R R+ Q + FNVL+TTYE+++ +++ L K+ WKY+IIDE R+K+
Sbjct: 613 YKGTKDARRRVEGQ-IRKGAFNVLMTTYEYVIKEKALLGKIRWKYMIIDEGHRLKNHNCK 671
Query: 1141 LARDLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGP 1199
L L+ + Q RLLLTGTPLQN P +F + F WF+ PF G
Sbjct: 672 LTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLNFLLPSIFSSCGTFEQWFNAPFATTGE 731
Query: 1200 THNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAI 1259
L E+ ++II RLH++L PF+LRR ++VE LP K V++C SA+Q I
Sbjct: 732 KVE-----LNQEETMLIIRRLHKVLRPFLLRRLKKEVESQLPDKTEYVIKCDQSALQKVI 786
Query: 1260 YDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY---KTLNNRCMELRKTCNHPLLNYPYFS 1316
Y R +QK + AK+ ++L N + LRK CNHP L +P
Sbjct: 787 Y-----------------RHMQKGLLLDAKMSSGARSLMNTVVHLRKLCNHPFL-FPNIE 828
Query: 1317 DLSKDF----------LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW 1366
D + + L++ GKL +LDRIL KL+ TGHR+L+F MT +++I E++L +
Sbjct: 829 DSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNF 888
Query: 1367 RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 1426
R+ Y R+DG+T ++R + FN+ +SD F+F+LS RA G GLNLQ+ADTVII+D D
Sbjct: 889 RRYTYLRLDGSTKPDERGDLLTQFNAPNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDW 948
Query: 1427 NPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKI--SSHQK---EDELRSGGTVDLED 1478
NP + QA RAHRIGQK+EV+V+ + +V +KI ++ K ++++ G D
Sbjct: 949 NPHQDMQAQDRAHRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGKFDQRS 1008
Query: 1479 DLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY 1538
G +R +E +I+ + ++ + +EV + +Q E + + + R
Sbjct: 1009 --TGAERK-QMLEQIIQADGEE---EEEEEVPDDETVNQMVARSEEEFNIFQSMDIDRRR 1062
Query: 1539 QET--VHDVPSLQEVNRMIARSEDEVEL-FDQMDEEFGWIEEMTRYDQVPKWLRASTKEV 1595
+E +H P L E + + +D ++L FD + E E DQ P R +EV
Sbjct: 1063 EEANQLHRKPRLLEEHEI---PDDILKLSFDYEEMERAREEGREVVDQTPNQ-RRRRREV 1118
Query: 1596 NATIANLSKKP-SKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGE 1648
+ + LS + K + + ++ + ERK+ K +K E DD + +
Sbjct: 1119 DYSSDLLSDEQFMKQV---EEVEDENNQAVAERKKQRK-RKMAGLDENDDSMDD 1168
Score = 60 (26.2 bits), Expect = 4.2e-105, Sum P(3) = 4.2e-105
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 460 QGGLATQMPQQRLG----FTKHQLHVLKAQILAFRRLKKGEGTLPQELL 504
Q GL +P Q G T QL+ L+AQ+ A+R L + E +P L+
Sbjct: 69 QSGLPDAVPGQENGGNQQITPAQLNQLRAQVSAYRLLARNE-QVPANLI 116
Score = 48 (22.0 bits), Expect = 4.2e-105, Sum P(3) = 4.2e-105
Identities = 19/87 (21%), Positives = 36/87 (41%)
Query: 1804 KRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT--DTE-MKAHG 1860
+ + S +V P+ E+ E S T + D P + + D+E
Sbjct: 1380 RAQASTKVTPKKD-EKKETSSSVKTEEAKKDDEPSTSSASAPPPKKKKESEDSEDPMEED 1438
Query: 1861 ESNSLRHDQSEPSSKSRRNLPSRKIAN 1887
E + + EP+S R++ P+R+ +N
Sbjct: 1439 EEEEIIGQKKEPASSRRKSRPTRRFSN 1465
Score = 39 (18.8 bits), Expect = 3.7e-104, Sum P(3) = 3.7e-104
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEI-GEYSEASSDERNGYPVQ 1663
++K+ + + P ++ ++EI G+ E +S R P +
Sbjct: 1423 KKKKESEDSEDPMEEDEEEEIIGQKKEPASSRRKSRPTR 1461
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 1003 (358.1 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
Identities = 242/598 (40%), Positives = 334/598 (55%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+Q +ALI YLME K GP LIIVP
Sbjct: 4 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 63
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL 1118
+ L NW E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L
Sbjct: 64 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHIL 122
Query: 1119 SKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 1177
+K+ WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P
Sbjct: 123 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLP 182
Query: 1178 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 1237
+F + F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE
Sbjct: 183 TIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVE 237
Query: 1238 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297
LP KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N
Sbjct: 238 AQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNT 290
Query: 1298 CMELRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHR 1346
M+LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+
Sbjct: 291 IMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHK 350
Query: 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406
VLLF MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA
Sbjct: 351 VLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRA 410
Query: 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQ 1463
G GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI +
Sbjct: 411 GGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAA 470
Query: 1464 K-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQR 1518
K + ++ G D + + ++ + ++ + Q + DEV + +Q
Sbjct: 471 KYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQD---EEEDEVPDDETVNQM 524
Query: 1519 TTHEERRMTLETLLHDEERYQETVHDV--PSLQEVNRM---IARSEDEVELFDQMDEE 1571
E L + + R +E + P L E + + I + + EVE +EE
Sbjct: 525 IARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEE 582
Score = 54 (24.1 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 1759 KRMPDELEEGEIAVSGDSH---MDHQQS---GSWTHDRDEGEDEQVLQPKIKRKRSIRVR 1812
+R+ E EE ++ G H +D+ S W +EG E++ + ++++K+S R R
Sbjct: 574 ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEI-EEEVRQKKSSRKR 632
Query: 1813 PRHTVERPEERSCTDTPLHRGDSS 1836
R + P + + + D S
Sbjct: 633 KRDSDAGPSTPTTSTRSRDKDDES 656
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 955 (341.2 bits), Expect = 5.2e-100, Sum P(5) = 5.2e-100
Identities = 204/499 (40%), Positives = 307/499 (61%)
Query: 981 LAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040
LA N V+ QP ++ G L++YQ+ GL+W++SLY LNGILADEMGLGKTVQ +A I
Sbjct: 604 LAKKSNNLVIEQPDLMTGGKLKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFI 663
Query: 1041 AYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100
++L E P L++ P + + NW SE +W P + I Y G +D+R R ++ +
Sbjct: 664 SFLYERMNVREPFLVVAPLSTISNWVSEFARWSPKLHVIVYKGKQDER-RETARTIPRNA 722
Query: 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1160
F V++T++E+I+ DR L +V W YIIIDE R+K++ S L+ L +Y + RLLLTGTP
Sbjct: 723 FCVVITSFEYIIKDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTP 782
Query: 1161 LQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220
LQND P +F++ F +WF+ PFQ +G N + + E+ +III+RL
Sbjct: 783 LQNDLGELWALLNFLLPTIFNSADTFQNWFNAPFQAKGK--NLIN--VNEEESLIIINRL 838
Query: 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV 1280
HQ+L F+LRR DVE LP K V++C MSA+Q A+Y + G L +DP+ ++ R
Sbjct: 839 HQVLRFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRS 898
Query: 1281 QKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL 1340
+ K+ K NN +L+K CNHP L + D+++D L+++ GK +D+IL K+
Sbjct: 899 GR-----LKM-KGFNNIVKQLQKICNHPYLFKDEW-DINED-LIRTSGKFDTMDQILTKM 950
Query: 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400
+ HRVL+F+ MT++++++EEY ++ + R+DG+T E+R +V++N DS +IF
Sbjct: 951 HASKHRVLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSPFWIF 1010
Query: 1401 LLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1460
+LS A G G+NLQ+ADTVII+D D NP+ + QA R HRIGQ V V + IS
Sbjct: 1011 VLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRL------IS 1064
Query: 1461 SHQKEDELRSGGTVDLEDD 1479
++ E+++ T LE D
Sbjct: 1065 ANSIEEKILGRATDKLEID 1083
Score = 120 (47.3 bits), Expect = 5.2e-100, Sum P(5) = 5.2e-100
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP-SLQEVNRMIARSED 1560
K+++ ++I AG F+ + +ERR LE LH T+ +VP L+E+N++IAR +
Sbjct: 1079 KLEIDAKIIQAGMFNTHSNDQERRAKLEQFLHGFPN--NTLDEVPVDLKEINKLIARDDF 1136
Query: 1561 EVELFDQMDEE 1571
E + F +MD+E
Sbjct: 1137 EFKQFQEMDKE 1147
Score = 54 (24.1 bits), Expect = 5.2e-100, Sum P(5) = 5.2e-100
Identities = 33/111 (29%), Positives = 49/111 (44%)
Query: 781 DRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQW-RKKLLEAHWAI--RDART- 836
D Y +VR R + Q + + +SI +KK LEA AI RD +
Sbjct: 397 DNDYNLYVRSIPRLINRPIDQTSSIYDTTTTQLPESILVTNKKKFLEAI-AIHARDFKVF 455
Query: 837 -ARN-----RGVAKYHERILREFSKRKDDDRNK-RMEALKNNDVERYREML 880
+ N + V K R +E KR+ + +K R+ LK D E YR++L
Sbjct: 456 HSNNEKFLRQNVIKAIHRYHKEKEKREIERLSKERIRLLKARDTEGYRDLL 506
Score = 46 (21.3 bits), Expect = 2.6e-92, Sum P(5) = 2.6e-92
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 1475 DLEDDLAGKDRY--IGSIEGLIRNNI--QQYKIDMADEVINAGRFDQRTTH-EERRMTLE 1529
D ++D+AGK R I S + +N+ QY M ++ + F+Q H E +++
Sbjct: 1184 DKDEDIAGKKRSTAIASANSFVHDNLTDNQYA-RMIEKNMT---FEQYKAHLEAKKLKNG 1239
Query: 1530 TLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE 1571
D E+ ++ S N+ S+DE D++D+E
Sbjct: 1240 KSKKDGEKSKKKKGK--SRGRKNK----SDDEDSSDDELDDE 1275
Score = 44 (20.5 bits), Expect = 7.6e-92, Sum P(4) = 7.6e-92
Identities = 31/144 (21%), Positives = 58/144 (40%)
Query: 1750 LEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR---DEGEDEQVLQPKIKRK 1806
L P + +P +L+E ++ D + +Q +R D+ ++ QP IK +
Sbjct: 1109 LHGFPNNTLDEVPVDLKEINKLIARDD-FEFKQFQEMDKERLKVDQANSKKTRQP-IKPR 1166
Query: 1807 RSIRVR-PRHTVERPEERSCTD-------TPLHRGDSSLLPFQMDNKYPAQLR---TDTE 1855
I P + P D T + +S + DN+Y + T +
Sbjct: 1167 LMIEKELPEWVLATPVTDKDEDIAGKKRSTAIASANSFVHDNLTDNQYARMIEKNMTFEQ 1226
Query: 1856 MKAHGESNSLRHDQSEPSS-KSRR 1878
KAH E+ L++ +S+ KS++
Sbjct: 1227 YKAHLEAKKLKNGKSKKDGEKSKK 1250
Score = 43 (20.2 bits), Expect = 5.2e-100, Sum P(5) = 5.2e-100
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 1614 SNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1658
S + + T KRG K K PN + D+E + E ++ N
Sbjct: 1498 STAATNGTSVHTPGKRGRKKKIRPNPE--DEEKDKDKENENENEN 1540
Score = 41 (19.5 bits), Expect = 5.2e-100, Sum P(5) = 5.2e-100
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 689 STAMVNSSNNLTLAYDVKDLLSEEGLEVLQK-KRSENLKK 727
+T N +NN +++ L EE LE ++ +R +L+K
Sbjct: 257 NTTNTNGNNNNNNNNEIETLTKEEELEKEKEIQRLRDLQK 296
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 554 (200.1 bits), Expect = 1.5e-91, Sum P(3) = 1.5e-91
Identities = 121/314 (38%), Positives = 182/314 (57%)
Query: 943 EEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLR 1002
+++ + + AGE R+R E + S ++ S V R PS ++ G LR
Sbjct: 140 KKDDKQSLISAGEYFSYRHRRTEQEEDEELLSESRKTS---NVCVRFEVSPSYVKGGPLR 196
Query: 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062
DYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GPH+++VP + L
Sbjct: 197 DYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTL 256
Query: 1063 VNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVD 1122
NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K
Sbjct: 257 YNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFH 316
Query: 1123 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDN 1182
W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 317 WRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNS 376
Query: 1183 RKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 1242
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPP
Sbjct: 377 ADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPP 421
Query: 1243 KVSIVLRCRMSAIQ 1256
K I + +S +Q
Sbjct: 422 KKEIKVYLGLSKMQ 435
Score = 466 (169.1 bits), Expect = 1.5e-91, Sum P(3) = 1.5e-91
Identities = 126/351 (35%), Positives = 191/351 (54%)
Query: 1201 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 1255
++ADD W +T+ + ++ RLH +L+PF+LRR DVE SLPPK I + +S +
Sbjct: 375 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKM 434
Query: 1256 QSAIYDWIKATGTLR-VDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL---- 1310
Q +W ++ +D + ++ K L N M+LRK CNHP L
Sbjct: 435 QR---EWWYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGA 482
Query: 1311 --NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368
PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLDILE+Y WR
Sbjct: 483 EPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 539
Query: 1369 LVYRRIDGTTSLEDRES--AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 1426
Y R+DG T E+RE AI FN+ +S FIF+LS RA G G+NL SAD VI+YD D
Sbjct: 540 YEYCRLDGQTPHEEREKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDW 599
Query: 1427 NPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLE 1477
NP+ + QA+ RAHRIGQK+ V+V + E +V++ + D + + G +D +
Sbjct: 600 NPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ 659
Query: 1478 DDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 1526
+ K+ + I + + ++ DE I R +++T R+
Sbjct: 660 SNKLAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGEKKTAEMNERL 710
Score = 38 (18.4 bits), Expect = 1.5e-91, Sum P(3) = 1.5e-91
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 1817 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 1845
+ER E+++ + L + G+SSL F+MD +
Sbjct: 696 LERGEKKTAEMNERLQKMGESSLRNFRMDTE 726
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 904 (323.3 bits), Expect = 2.0e-91, Sum P(2) = 2.0e-91
Identities = 212/537 (39%), Positives = 316/537 (58%)
Query: 989 VMRQ-PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
VM + PS ++ G LR+YQI GL W++SLY N+L+GILADEMGLGKT+Q ++ + YL K
Sbjct: 126 VMTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIK 185
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTT 1107
GP ++IVP + L NW+ E KW P V+ + G K+QR+ + ++ KF+VL+T+
Sbjct: 186 HIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFDVLITS 245
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXX 1167
+E I+ ++S L K W+YI++DEA R+K+ +S L++ + + + RLL+TGTPLQN+
Sbjct: 246 FEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHE 305
Query: 1168 XXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P+VF + D F + F + +++ + K + LHQ+L PF
Sbjct: 306 LWALLNFLLPDVFGDS----DQFDEAFDNQNSEELDEEEKQRRQDKAV--SELHQLLSPF 359
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287
+LRR DVE SL PK+ + M+ +Q +W K L D + V K +
Sbjct: 360 LLRRVKADVEKSLLPKIETNVYIGMTDMQ---VEWYKRL--LEKDIDAVNGVVGKR---E 411
Query: 1288 AKVYKTLNNRCMELRKTCNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQ 1341
K L N M+LRK CNHP L PY +D + LV + GK+ ILD++L K +
Sbjct: 412 GKT--RLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD---EHLVYNSGKMIILDKMLKKFK 466
Query: 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401
G RVL+FS M+++LDILE+Y +R Y RIDG+TS EDR AI ++N+ DS+ FIFL
Sbjct: 467 AEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFL 526
Query: 1402 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EA 1454
L+ RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK++VKV E
Sbjct: 527 LTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEK 586
Query: 1455 VVDKISSHQKEDEL--RSGGTVDLEDDLAG-KDRYIGSIEGLIRNNIQQYKIDMADE 1508
V+++ + + D+L + G ++ +++ KD IG I+ + + K M D+
Sbjct: 587 VLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKEVFENSKGTMLDD 643
Score = 49 (22.3 bits), Expect = 2.0e-91, Sum P(2) = 2.0e-91
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 1549 QEVNRMIARSEDEVELFDQM-DEEF-GWIE-EMTRY-DQVPKWLRASTKEVNATIANLSK 1604
+++N +A +E+E+ D++ +E F W + T + K+ R K++ + N K
Sbjct: 811 EKINNAVALTEEEIATRDRLLEESFHNWSRRDFTNFIHATAKYGRNEYKKIAKALGN--K 868
Query: 1605 KPSK 1608
K S+
Sbjct: 869 KRSE 872
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 904 (323.3 bits), Expect = 2.0e-91, Sum P(2) = 2.0e-91
Identities = 212/537 (39%), Positives = 316/537 (58%)
Query: 989 VMRQ-PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
VM + PS ++ G LR+YQI GL W++SLY N+L+GILADEMGLGKT+Q ++ + YL K
Sbjct: 126 VMTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIK 185
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTT 1107
GP ++IVP + L NW+ E KW P V+ + G K+QR+ + ++ KF+VL+T+
Sbjct: 186 HIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFDVLITS 245
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXX 1167
+E I+ ++S L K W+YI++DEA R+K+ +S L++ + + + RLL+TGTPLQN+
Sbjct: 246 FEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHE 305
Query: 1168 XXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P+VF + D F + F + +++ + K + LHQ+L PF
Sbjct: 306 LWALLNFLLPDVFGDS----DQFDEAFDNQNSEELDEEEKQRRQDKAV--SELHQLLSPF 359
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287
+LRR DVE SL PK+ + M+ +Q +W K L D + V K +
Sbjct: 360 LLRRVKADVEKSLLPKIETNVYIGMTDMQ---VEWYKRL--LEKDIDAVNGVVGKR---E 411
Query: 1288 AKVYKTLNNRCMELRKTCNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQ 1341
K L N M+LRK CNHP L PY +D + LV + GK+ ILD++L K +
Sbjct: 412 GKT--RLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD---EHLVYNSGKMIILDKMLKKFK 466
Query: 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401
G RVL+FS M+++LDILE+Y +R Y RIDG+TS EDR AI ++N+ DS+ FIFL
Sbjct: 467 AEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFL 526
Query: 1402 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EA 1454
L+ RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK++VKV E
Sbjct: 527 LTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEK 586
Query: 1455 VVDKISSHQKEDEL--RSGGTVDLEDDLAG-KDRYIGSIEGLIRNNIQQYKIDMADE 1508
V+++ + + D+L + G ++ +++ KD IG I+ + + K M D+
Sbjct: 587 VLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKEVFENSKGTMLDD 643
Score = 49 (22.3 bits), Expect = 2.0e-91, Sum P(2) = 2.0e-91
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 1549 QEVNRMIARSEDEVELFDQM-DEEF-GWIE-EMTRY-DQVPKWLRASTKEVNATIANLSK 1604
+++N +A +E+E+ D++ +E F W + T + K+ R K++ + N K
Sbjct: 811 EKINNAVALTEEEIATRDRLLEESFHNWSRRDFTNFIHATAKYGRNEYKKIAKALGN--K 868
Query: 1605 KPSK 1608
K S+
Sbjct: 869 KRSE 872
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 538 (194.4 bits), Expect = 6.4e-90, Sum P(3) = 6.4e-90
Identities = 108/272 (39%), Positives = 168/272 (61%)
Query: 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
V PS +++G LRDYQ+ GL W++SL+ NKL+GILADEMGLGKT+Q ++ + YL K
Sbjct: 172 VSESPSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQ 231
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTY 1108
GP LIIVP + L NW+ E KW P+V+ + G KD R+ + + +F+VL+T+Y
Sbjct: 232 IEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSY 291
Query: 1109 EFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX 1168
E ++ +++ L ++ W+YI+IDEA R+K+ +S L++ + + + RLL+TGTPLQN+
Sbjct: 292 EMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHEL 351
Query: 1169 XXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228
P++F + + F +WF Q +N++ D + I+I +LH +L PF+
Sbjct: 352 WALLNFLLPDIFGDSELFDEWFEQ--------NNSEQD------QEIVIQQLHSVLNPFL 397
Query: 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
LRR DVE SL PK+ + M+ +Q Y
Sbjct: 398 LRRVKADVEKSLLPKIETNVYVGMTDMQIQWY 429
Score = 459 (166.6 bits), Expect = 6.4e-90, Sum P(3) = 6.4e-90
Identities = 156/486 (32%), Positives = 245/486 (50%)
Query: 1205 DDWLET----EKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
D+W E + + I+I +LH +L PF+LRR DVE SL PK+ + M+ +Q
Sbjct: 370 DEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMTDMQ---I 426
Query: 1261 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPY 1314
W K+ L D + V K + K L N M+LRK CNHP L PY
Sbjct: 427 QWYKSL--LEKDIDAVNGAVGKR---EGKT--RLLNIVMQLRKCCNHPYLFEGAEPGPPY 479
Query: 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1374
+D + L+ + GK+ ILD++L +L+ G RVL+FS M++LLDILE+Y +R Y RI
Sbjct: 480 TTD---EHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRI 536
Query: 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434
DG+TS E+R AI ++N +S+ F+FLL+ RA G G+NL +ADTVI++D D NP+ + QA
Sbjct: 537 DGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQA 596
Query: 1435 VARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSG-G--TVDL---EDD 1479
+ RAHRIGQK++V V E V+++ + + D+L + G G T L +DD
Sbjct: 597 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSKDD 656
Query: 1480 LAGKDRYIGSIEGLIRNNIQQYKIDM-ADEVINAGRFDQRTTHEERRMTLETL-LHDEER 1537
L ++ G+ + + + +D D+++ G +Q+T +E ++L L D ++
Sbjct: 657 LLDMIQF-GA-KNMFEKKASKVTVDADIDDILKKG--EQKT--QELNAKYQSLGLDDLQK 710
Query: 1538 YQETVHDVPSLQEVN--RMIARSEDEV-ELFDQMDEEFGWIEEMTRY---DQVPKWLRAS 1591
+ + S E N +S D+V E + E E T Y D + +
Sbjct: 711 FNGIENQ--SAYEWNGKSFQKKSNDKVVEWINPSRRERR--REQTTYSVDDYYKEIIGGG 766
Query: 1592 TKEVNATIANLSKKPSKNILFGSNIGVDSGEIET-ERKRGPKGKKYPNYKEVDDEI-GEY 1649
+K + + ++ G + E++ + K KK NYK +I G+
Sbjct: 767 SKSASKQTPQPKAPRAPKVIHGQDFQFFPKELDALQEKEQLYFKKKVNYKVTSYDITGDI 826
Query: 1650 SEASSD 1655
SD
Sbjct: 827 RNEGSD 832
Score = 48 (22.0 bits), Expect = 6.4e-90, Sum P(3) = 6.4e-90
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 841 GVAKYHERILREFSKRKDDDRNK--RMEALKNNDVERYREMLLEQQTSIPGDAAE 893
G+ H++ +++ K+ D D NK + + ++ +R+ E+ + D E
Sbjct: 106 GIKAKHDKNIQKLLKQLDSDANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEEE 160
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 530 (191.6 bits), Expect = 1.5e-89, Sum P(3) = 1.5e-89
Identities = 112/301 (37%), Positives = 176/301 (58%)
Query: 960 RNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNK 1019
R+R E + S N S A +V R PS ++ G LRDYQ+ GL W++SLY N
Sbjct: 125 RHRRTEQEEDEELLSEN---SKATSVCTRFDDSPSYVKTGKLRDYQVRGLNWLISLYENG 181
Query: 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079
+NGILADEMGLGKT+Q ++L+ Y+ ++ GPH+++VP + L NW +E +W+PS+ +
Sbjct: 182 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLKAV 241
Query: 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES 1139
+G +++R+ + +++V VT+YE ++ +R+ K +W+Y++IDEA R+K+ +S
Sbjct: 242 CLIGDREERTAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKS 301
Query: 1140 VLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGP 1199
L+ + ++ RLLLTGTPLQN+ P+VF++ + F WF
Sbjct: 302 KLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDAWFD-------- 353
Query: 1200 THNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAI 1259
T+N D T+ ++ RLH +L PF+LRR DVE SL PK I + +S +Q
Sbjct: 354 TNNCLGD---TK----LVERLHTVLRPFLLRRIKADVEKSLLPKKEIKIYVGLSKMQREW 406
Query: 1260 Y 1260
Y
Sbjct: 407 Y 407
Score = 459 (166.6 bits), Expect = 1.5e-89, Sum P(3) = 1.5e-89
Identities = 124/342 (36%), Positives = 182/342 (53%)
Query: 1205 DDWLETEK---KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
D W +T ++ RLH +L PF+LRR DVE SL PK I + +S +Q +
Sbjct: 349 DAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKADVEKSLLPKKEIKIYVGLSKMQR---E 405
Query: 1262 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYF 1315
W +D + ++ K L N M+LRK CNHP L PY
Sbjct: 406 WYTKILMKDIDILNSAGKMDK---------MRLLNVLMQLRKCCNHPYLFDGAEPGPPYT 456
Query: 1316 SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 1375
+DL LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR Y R+D
Sbjct: 457 TDLH---LVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLD 513
Query: 1376 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1435
G T E+R+ +I FN +S F+F+LS RA G G+NL +AD VIIYD D NP+ + QA+
Sbjct: 514 GQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAM 573
Query: 1436 ARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRY 1486
RAHRIGQK++V+V E +V++ + D + + G VD + GKD
Sbjct: 574 DRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDPSMNKLGKDEM 633
Query: 1487 IGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 1526
+ I + + ++ DE I+ R +++T + +M
Sbjct: 634 LSIIRHGATHVFASKESEITDEDIDGILERGERKTMEMKEKM 675
Score = 50 (22.7 bits), Expect = 1.5e-89, Sum P(3) = 1.5e-89
Identities = 24/119 (20%), Positives = 55/119 (46%)
Query: 1523 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 1581
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 894 QRRISIKKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESV-Y 952
Query: 1582 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 1632
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGP+
Sbjct: 953 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPR 1011
Score = 42 (19.8 bits), Expect = 7.2e-46, Sum P(3) = 7.2e-46
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 1514 RFDQRTTHEERRMTL 1528
R D +T HEER++++
Sbjct: 511 RLDGQTPHEERQISI 525
Score = 38 (18.4 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 1489 SIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 1544
SI+ + + I +YK I+ G + EE L +LH +E+V+D
Sbjct: 898 SIKKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYD 953
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 891 (318.7 bits), Expect = 9.5e-89, Sum P(2) = 9.5e-89
Identities = 212/563 (37%), Positives = 314/563 (55%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 154 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 213
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 214 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 273
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 274 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 333
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 334 NFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRI 378
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
DVE SLPPK I + +S +Q +W +D + ++ K
Sbjct: 379 KTDVEKSLPPKKEIKIYLGLSKMQR---EWYTKILMKDIDVLNSSGKMDK---------M 426
Query: 1293 TLNNRCMELRKTCNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHR 1346
L N M+LRK CNHP L PY +D + +V + GK+ +LD++L KL+ G R
Sbjct: 427 RLLNILMQLRKCCNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSR 483
Query: 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHD 1394
VL+FS MT+LLDILE+Y WR Y R+DG T E+RE AI FN+ +
Sbjct: 484 VLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPN 543
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-- 1452
S FIF+LS RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V +
Sbjct: 544 SSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLIT 603
Query: 1453 -----EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDM 1505
E +V++ + D + + G +D + + K+ + I + + ++
Sbjct: 604 DNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESEL 663
Query: 1506 ADEVINA--GRFDQRTTHEERRM 1526
DE I R +++T R+
Sbjct: 664 TDEDITTILERGEKKTAEMNERL 686
Score = 37 (18.1 bits), Expect = 9.5e-89, Sum P(2) = 9.5e-89
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1817 VERPEERSCT-DTPLHR-GDSSLLPFQMD 1843
+ER E+++ + L + G+SSL F+MD
Sbjct: 672 LERGEKKTAEMNERLQKMGESSLRNFRMD 700
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 891 (318.7 bits), Expect = 9.5e-89, Sum P(2) = 9.5e-89
Identities = 212/563 (37%), Positives = 314/563 (55%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 175 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 234
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 235 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 294
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 295 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 354
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 355 NFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRI 399
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
DVE SLPPK I + +S +Q +W +D + ++ K
Sbjct: 400 KTDVEKSLPPKKEIKIYLGLSKMQR---EWYTKILMKDIDVLNSSGKMDK---------M 447
Query: 1293 TLNNRCMELRKTCNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHR 1346
L N M+LRK CNHP L PY +D + +V + GK+ +LD++L KL+ G R
Sbjct: 448 RLLNILMQLRKCCNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSR 504
Query: 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHD 1394
VL+FS MT+LLDILE+Y WR Y R+DG T E+RE AI FN+ +
Sbjct: 505 VLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPN 564
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-- 1452
S FIF+LS RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V +
Sbjct: 565 SSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLIT 624
Query: 1453 -----EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDM 1505
E +V++ + D + + G +D + + K+ + I + + ++
Sbjct: 625 DNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESEL 684
Query: 1506 ADEVINA--GRFDQRTTHEERRM 1526
DE I R +++T R+
Sbjct: 685 TDEDITTILERGEKKTAEMNERL 707
Score = 37 (18.1 bits), Expect = 9.5e-89, Sum P(2) = 9.5e-89
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1817 VERPEERSCT-DTPLHR-GDSSLLPFQMD 1843
+ER E+++ + L + G+SSL F+MD
Sbjct: 693 LERGEKKTAEMNERLQKMGESSLRNFRMD 721
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 888 (317.7 bits), Expect = 2.0e-88, Sum P(2) = 2.0e-88
Identities = 212/563 (37%), Positives = 314/563 (55%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 358 NFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRI 402
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
DVE SLPPK I + +S +Q +W +D + ++ K
Sbjct: 403 KTDVEKSLPPKKEIKIYLGLSKMQR---EWYTKILMKDIDVLNSAGKMDK---------M 450
Query: 1293 TLNNRCMELRKTCNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHR 1346
L N M+LRK CNHP L PY +D + +V + GK+ +LD++L KL+ G R
Sbjct: 451 RLLNILMQLRKCCNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSR 507
Query: 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHD 1394
VL+FS MT+LLDILE+Y WR Y R+DG T E+RE+ AI FN +
Sbjct: 508 VLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENGFLQIYFRRRREAIEAFNVPN 567
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-- 1452
S FIF+LS RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V +
Sbjct: 568 SSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLIT 627
Query: 1453 -----EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDM 1505
E +V++ + D + + G +D + + K+ + I + + ++
Sbjct: 628 DNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESEL 687
Query: 1506 ADEVINA--GRFDQRTTHEERRM 1526
DE I R +++T R+
Sbjct: 688 TDEDITTLLERGERKTAEMNERL 710
Score = 37 (18.1 bits), Expect = 2.0e-88, Sum P(2) = 2.0e-88
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 1817 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 1845
+ER E ++ + L + G+SSL F+MD +
Sbjct: 696 LERGERKTAEMNERLQKMGESSLRNFRMDTE 726
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 887 (317.3 bits), Expect = 2.6e-88, Sum P(2) = 2.6e-88
Identities = 212/563 (37%), Positives = 313/563 (55%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 358 NFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRI 402
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
DVE SLPPK I + +S +Q +W +D + ++ K
Sbjct: 403 KTDVEKSLPPKKEIKIYLGLSKMQR---EWYTKILMKDIDVLNSAGKMDK---------M 450
Query: 1293 TLNNRCMELRKTCNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHR 1346
L N M+LRK CNHP L PY +D + +V + GK+ +LD++L KL+ G R
Sbjct: 451 RLLNILMQLRKCCNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSR 507
Query: 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHD 1394
VL+FS MT+LLDILE+Y WR Y R+DG T E+RE AI FN +
Sbjct: 508 VLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNVPN 567
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-- 1452
S FIF+LS RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V +
Sbjct: 568 SSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLIT 627
Query: 1453 -----EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDM 1505
E +V++ + D + + G +D + + K+ + I + + ++
Sbjct: 628 DNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESEL 687
Query: 1506 ADEVINA--GRFDQRTTHEERRM 1526
DE I R +++T R+
Sbjct: 688 TDEDITTLLERGERKTAEMNERL 710
Score = 37 (18.1 bits), Expect = 2.6e-88, Sum P(2) = 2.6e-88
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 1817 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 1845
+ER E ++ + L + G+SSL F+MD +
Sbjct: 696 LERGERKTAEMNERLQKMGESSLRNFRMDTE 726
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 887 (317.3 bits), Expect = 2.6e-88, Sum P(2) = 2.6e-88
Identities = 212/563 (37%), Positives = 313/563 (55%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 358 NFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRI 402
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
DVE SLPPK I + +S +Q +W +D + ++ K
Sbjct: 403 KTDVEKSLPPKKEIKIYLGLSKMQR---EWYTKILMKDIDVLNSAGKMDK---------M 450
Query: 1293 TLNNRCMELRKTCNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHR 1346
L N M+LRK CNHP L PY +D + +V + GK+ +LD++L KL+ G R
Sbjct: 451 RLLNILMQLRKCCNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSR 507
Query: 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHD 1394
VL+FS MT+LLDILE+Y WR Y R+DG T E+RE AI FN +
Sbjct: 508 VLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNVPN 567
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-- 1452
S FIF+LS RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V +
Sbjct: 568 SSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLIT 627
Query: 1453 -----EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDM 1505
E +V++ + D + + G +D + + K+ + I + + ++
Sbjct: 628 DNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESEL 687
Query: 1506 ADEVINA--GRFDQRTTHEERRM 1526
DE I R +++T R+
Sbjct: 688 TDEDITTLLERGERKTAEMNERL 710
Score = 37 (18.1 bits), Expect = 2.6e-88, Sum P(2) = 2.6e-88
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 1817 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 1845
+ER E ++ + L + G+SSL F+MD +
Sbjct: 696 LERGERKTAEMNERLQKMGESSLRNFRMDTE 726
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 509 (184.2 bits), Expect = 8.1e-88, Sum P(6) = 8.1e-88
Identities = 116/305 (38%), Positives = 167/305 (54%)
Query: 967 NAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILAD 1026
NAP ++++ L ++ QPS + AGTLRDYQ+ GL W++ + N N ILAD
Sbjct: 722 NAPMKANTISAKKRLDQGFT-KLDTQPSWISAGTLRDYQMEGLNWLVHSWMNNTNVILAD 780
Query: 1027 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKD 1086
EMGLGKT+Q ++ ++YL + GP L++VP + + NW+ E KW P+++ I Y G
Sbjct: 781 EMGLGKTIQTISFLSYLFNEQDIKGPFLVVVPLSTIENWQREFAKWAPAMNVIVYTGTGQ 840
Query: 1087 QRS--RLFSQEVA------ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138
R RL+ L FNVL+TTY+FI+ D++ L + W+++ +DEA R+K+ E
Sbjct: 841 SRDIIRLYEFYTTNRLGKKKLNFNVLLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSE 900
Query: 1139 SVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEG 1198
SVL L Y RLL+TGTPLQN P F + K F D +S
Sbjct: 901 SVLHEVLKLYNTTNRLLVTGTPLQNSLKELWNLLNFLMPNKFTSLKDFQDQYS------- 953
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
D E ++ I +LH +L+P +LRR +DVE SLPPK +LR +S +Q
Sbjct: 954 -------DLKENDQ----IAQLHSVLKPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKK 1002
Query: 1259 IYDWI 1263
Y WI
Sbjct: 1003 YYKWI 1007
Score = 478 (173.3 bits), Expect = 8.1e-88, Sum P(6) = 8.1e-88
Identities = 112/239 (46%), Positives = 152/239 (63%)
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I +LH +L+P +LRR +DVE SLPPK +LR +S +Q Y WI T + E
Sbjct: 961 IAQLHSVLKPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWI-LTKNFQ---ELN 1016
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL--NYPYFSDL-SKDFL---VKSCGKL 1330
K + +K TL N EL+KTCNHP L N +L +KD L +++ GKL
Sbjct: 1017 KGKGEKT---------TLLNIMTELKKTCNHPYLYQNARDECELGAKDLLDSMIRASGKL 1067
Query: 1331 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390
+LD++LI+L+ TGHRVL+FS M ++LDIL +YL+ R ++R+DG+ S E R A+ F
Sbjct: 1068 VLLDKLLIRLKETGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRF 1127
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
N+ DS F FLLS +A G G+NL +ADTVII+D D NP+N+ QA ARAHRIGQK V +
Sbjct: 1128 NAVDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNI 1186
Score = 64 (27.6 bits), Expect = 8.1e-88, Sum P(6) = 8.1e-88
Identities = 23/111 (20%), Positives = 48/111 (43%)
Query: 1788 HDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHR--GDSSLLPFQMDNK 1845
+D+D DE ++ + K++++ R + ++ E + +P G S+ P +M +
Sbjct: 1643 NDKDNDNDEDYMEEEEKKEKTKNTRTKKRIKSEELQKEILSPKKTSFGRLSVPPNKMGER 1702
Query: 1846 YPAQLRTDTEMKAHGESNSLRHDQ--SEPSSKSRRNLPSRKIANAPKSRAS 1894
P++ T T S S R+ + S+ R+ S + R+S
Sbjct: 1703 SPSKSTTTTTTTTTSSSKSSRNSKHHSDDDDDDYRDKDSNSGRGRGRGRSS 1753
Score = 54 (24.1 bits), Expect = 1.0e-85, Sum P(7) = 1.0e-85
Identities = 38/205 (18%), Positives = 67/205 (32%)
Query: 1588 LRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIG 1647
L S K+++ T S K +K + GE + +KRG K K+ KEV +
Sbjct: 1552 LLKSAKDISKTTNKKSSKQTKE--------KEEGEFKIPKKRGRKSKEI---KEVSNN-N 1599
Query: 1648 EYSEASSDERNGYPVQXXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRP 1707
++ + + NG S+ D +++ + DY+
Sbjct: 1600 HNNKETKENNNG---DNNNNNNNNNSSNNRKRTTNNKYSDDDDDDDNDKDNDNDEDYMEE 1656
Query: 1708 SENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE 1767
E + +I+SP FG LS P + +R P +
Sbjct: 1657 EEKKEKT---KNTRTKKRIKSEELQKEILSP-KKTSFGRLSV---PPNKMGERSPSKSTT 1709
Query: 1768 GEIAVSGDSHMDHQQSGSWTHDRDE 1792
+ S + S + D D+
Sbjct: 1710 TTTTTTTSSSKSSRNSKHHSDDDDD 1734
Score = 49 (22.3 bits), Expect = 8.1e-88, Sum P(6) = 8.1e-88
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 529 NNQDRVSGKIAEDQLRHLESN--GKDAQAVSSSNVQSLPKEEAYAGDD---KAAVSPVGQ 583
NN + ++ + L+ SN G ++ + SS+ S +EE+ + +D K + Q
Sbjct: 198 NNNNNINNN--NNGLKKDISNFKGNESSSSESSSESSSSEEESESQEDTPNKQRNKVLTQ 255
Query: 584 GMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSA 643
+++ ++E + P +++ V V SD E E + Q D +D S + + S
Sbjct: 256 QLASESEEE---LQPVNKKKSTMVKKVDSDFESEEDVEEEQSGKDNDSDYEPSESEEQSE 312
Query: 644 CD 645
D
Sbjct: 313 ED 314
Score = 48 (22.0 bits), Expect = 5.1e-85, Sum P(6) = 5.1e-85
Identities = 15/78 (19%), Positives = 36/78 (46%)
Query: 1533 HDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRAST 1592
H+ + + +D L++ + ++ ++ +E F + + I + + K+L +
Sbjct: 1768 HESDEEDDKYYDKNLLRKCQQYLSPIKELLENFRSLSDSKVQISREEKVSKTKKYLLSLG 1827
Query: 1593 KEVNATIANLSKKPSKNI 1610
KE++ L +K S NI
Sbjct: 1828 KEISII---LDEKKSANI 1842
Score = 46 (21.3 bits), Expect = 8.1e-88, Sum P(6) = 8.1e-88
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 1523 ERRMTLETL-LHDEERYQETVHDVPSLQEV-NR----MIARSEDEVELFDQMDEEFGWIE 1576
+++M L+ L + E+ Q + P+ V N+ I + E ELF + EE IE
Sbjct: 1204 KQKMVLDHLVIQTMEKSQTAKSNTPNNSNVFNKEELEAILKFGAE-ELFKETGEEANPIE 1262
Query: 1577 EMTRYDQVPKWLRASTKEVN 1596
EM D++ RA T+E +
Sbjct: 1263 EMD-IDEILS--RAETREAS 1279
Score = 45 (20.9 bits), Expect = 9.3e-87, Sum P(7) = 9.3e-87
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 694 NSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKI 728
N N L + SEE L+ + KK+S +KK+
Sbjct: 246 NKQRNKVLTQQLASE-SEEELQPVNKKKSTMVKKV 279
Score = 43 (20.2 bits), Expect = 8.1e-88, Sum P(6) = 8.1e-88
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 849 ILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEY 908
I +E K++ D + +V + R+ ++ T+I E ++ + EY
Sbjct: 618 ITKELMKQEIQDYTIVERVIAQREVAQSRDQIVNSTTAIDPSTGESTTTTTTTTASSSEY 677
Score = 41 (19.5 bits), Expect = 5.5e-87, Sum P(6) = 5.5e-87
Identities = 16/66 (24%), Positives = 25/66 (37%)
Query: 599 GKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTA 658
G E + SS S E E ++ Q D P + V Q A ++ + +P +
Sbjct: 219 GNESSSSESSSESSSSEEE-----SESQEDTPNKQRNKVLTQQLASESEEELQPVNKKKS 273
Query: 659 LQPKDV 664
K V
Sbjct: 274 TMVKKV 279
Score = 39 (18.8 bits), Expect = 9.3e-87, Sum P(7) = 9.3e-87
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 296 VANHKANESNMGAPSSPVPVSKQQVTS 322
++N K NES+ SS S+++ S
Sbjct: 214 ISNFKGNESSSSESSSESSSSEEESES 240
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 880 (314.8 bits), Expect = 6.8e-87, P = 6.8e-87
Identities = 211/563 (37%), Positives = 314/563 (55%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 155 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPGP 214
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 215 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVI 274
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 275 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 334
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 335 NFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRI 379
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
DVE SLPPK I + +S +Q +W +D + ++ K
Sbjct: 380 KTDVEKSLPPKKEIKIYLGLSKMQR---EWYTKILMKDIDVLNSSGKMDK---------M 427
Query: 1293 TLNNRCMELRKTCNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHR 1346
L N M+LRK CNHP L PY +D + +V + GK+ LD++L +++ G R
Sbjct: 428 RLLNILMQLRKCCNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVALDKLLARIKEQGSR 484
Query: 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHD 1394
VL+FS MT+LLDILE+Y WR Y R+DG T E+RE+ AI FN+ +
Sbjct: 485 VLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAIEAFNAPN 544
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-- 1452
S FIF+LS RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V +
Sbjct: 545 SSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLIT 604
Query: 1453 -----EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDM 1505
E +V++ + D + + G +D + + K+ + I + + ++
Sbjct: 605 DNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESEL 664
Query: 1506 ADE--VINAGRFDQRTTHEERRM 1526
DE V R +++T RM
Sbjct: 665 TDEDIVTILERGEKKTAEMNERM 687
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 503 (182.1 bits), Expect = 4.9e-83, Sum P(3) = 4.9e-83
Identities = 109/272 (40%), Positives = 158/272 (58%)
Query: 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+++QP + GT++ YQ+ GL W+ LY K+NGILADEMGLGKT+Q ++L+ YL K
Sbjct: 311 ILKQPMNIN-GTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKN 369
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTY 1108
+II P + L NW E+ KW + Y G KDQR L ++ + F+VL+TTY
Sbjct: 370 IKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKEL-NRNLLHSDFDVLLTTY 428
Query: 1109 EFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX 1168
E ++ D+S L +DW +++IDEA R+K+ +SVL+ + R + RLL+TGTPL N+
Sbjct: 429 EIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKEL 488
Query: 1169 XXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228
P++FDN + F + F+ K N + II +LH IL+PFM
Sbjct: 489 WSLLNFLMPKIFDNSEEFDNLFN--ISKISTNDNKQSE---------IITQLHTILKPFM 537
Query: 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
LRR +VE SLPPK I + MS +Q +Y
Sbjct: 538 LRRLKVEVEQSLPPKREIYIFVGMSKLQKKLY 569
Score = 440 (159.9 bits), Expect = 4.9e-83, Sum P(3) = 4.9e-83
Identities = 130/378 (34%), Positives = 209/378 (55%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
K+ II +LH IL+PFMLRR +VE SLPPK I + MS +Q +Y I + +
Sbjct: 521 KQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKN---I 577
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-----NYPYFSDLSKDFLVKS 1326
D N + +K + N M+LRK CNHP L PY + + L+++
Sbjct: 578 DV--------LNAMTGSK--NQMLNILMQLRKCCNHPYLFDGIEEPPY---IEGNHLIET 624
Query: 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386
GK+ +LD++L +L++ RVLLFS MT+LLDI+++Y +W+ Y RIDG+T ++R+
Sbjct: 625 SGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVR 684
Query: 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446
I FN +S FIFLLS RA G G+NL +AD VI++D D NP+ + QA+ RAHRIGQK+
Sbjct: 685 INQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKR 744
Query: 1447 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 1506
V ++Y V + S +K E R+ + L+ + K + ++ NN Q+
Sbjct: 745 V-IVYR--FVTQNSVEEKIVE-RAAKKLKLDSLIIQKGKL--NLNSAKENNKQELH---- 794
Query: 1507 DEVINAGRFDQRTTHEERRMT---LETLLHD-EERYQETVHDVPSLQEVNRMIARSEDE- 1561
+++N G + T + ++ ++ +L D E+R E + +L+ + + S D
Sbjct: 795 -DILNFGAPEVYKTQDISSISDEDIDIILADAEKRTIEIEKKLKNLENIFDLTNISLDGG 853
Query: 1562 VELFDQMDEEFGWIEEMT 1579
+ +++ +++E EE T
Sbjct: 854 LNMYNDLEKEAS--EEST 869
Score = 45 (20.9 bits), Expect = 4.9e-83, Sum P(3) = 4.9e-83
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 847 ERILREFS---KRKDDDRNKRMEALKNNDVER 875
+R L E S +D+ RNK+ ++++ ND E+
Sbjct: 141 KRKLNEISYDNNEEDEFRNKKDDSMEMNDKEK 172
Score = 42 (19.8 bits), Expect = 2.2e-41, Sum P(3) = 2.2e-41
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 1540 ETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR--ASTK--EV 1595
ET + L ++ + + V LF QM I++ R+ P +LR ST E
Sbjct: 623 ETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYP-YLRIDGSTPGDER 681
Query: 1596 NATIANLSKKPSKNILF 1612
I ++ SK +F
Sbjct: 682 QVRINQFNEPNSKYFIF 698
Score = 42 (19.8 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 1181 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 1238
DN H+ + + HN D+++ EK + +L Q+L +R E + G
Sbjct: 218 DNNN--HNEDNNNHNDDNNNHNDDNNYNSEEKPNYLQEKLEQLLA--QTKRYTEKLAG 271
Score = 41 (19.5 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 414 VDQPLPVKNSSGPENSQMQYLRQLNR 439
+D+ +KN +S +++LR NR
Sbjct: 448 IDEAHRIKNEKSVLSSSVRFLRSENR 473
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 503 (182.1 bits), Expect = 4.9e-83, Sum P(3) = 4.9e-83
Identities = 109/272 (40%), Positives = 158/272 (58%)
Query: 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+++QP + GT++ YQ+ GL W+ LY K+NGILADEMGLGKT+Q ++L+ YL K
Sbjct: 311 ILKQPMNIN-GTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKN 369
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTY 1108
+II P + L NW E+ KW + Y G KDQR L ++ + F+VL+TTY
Sbjct: 370 IKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKEL-NRNLLHSDFDVLLTTY 428
Query: 1109 EFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX 1168
E ++ D+S L +DW +++IDEA R+K+ +SVL+ + R + RLL+TGTPL N+
Sbjct: 429 EIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKEL 488
Query: 1169 XXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228
P++FDN + F + F+ K N + II +LH IL+PFM
Sbjct: 489 WSLLNFLMPKIFDNSEEFDNLFN--ISKISTNDNKQSE---------IITQLHTILKPFM 537
Query: 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
LRR +VE SLPPK I + MS +Q +Y
Sbjct: 538 LRRLKVEVEQSLPPKREIYIFVGMSKLQKKLY 569
Score = 440 (159.9 bits), Expect = 4.9e-83, Sum P(3) = 4.9e-83
Identities = 130/378 (34%), Positives = 209/378 (55%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
K+ II +LH IL+PFMLRR +VE SLPPK I + MS +Q +Y I + +
Sbjct: 521 KQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKN---I 577
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-----NYPYFSDLSKDFLVKS 1326
D N + +K + N M+LRK CNHP L PY + + L+++
Sbjct: 578 DV--------LNAMTGSK--NQMLNILMQLRKCCNHPYLFDGIEEPPY---IEGNHLIET 624
Query: 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386
GK+ +LD++L +L++ RVLLFS MT+LLDI+++Y +W+ Y RIDG+T ++R+
Sbjct: 625 SGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVR 684
Query: 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446
I FN +S FIFLLS RA G G+NL +AD VI++D D NP+ + QA+ RAHRIGQK+
Sbjct: 685 INQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKR 744
Query: 1447 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 1506
V ++Y V + S +K E R+ + L+ + K + ++ NN Q+
Sbjct: 745 V-IVYR--FVTQNSVEEKIVE-RAAKKLKLDSLIIQKGKL--NLNSAKENNKQELH---- 794
Query: 1507 DEVINAGRFDQRTTHEERRMT---LETLLHD-EERYQETVHDVPSLQEVNRMIARSEDE- 1561
+++N G + T + ++ ++ +L D E+R E + +L+ + + S D
Sbjct: 795 -DILNFGAPEVYKTQDISSISDEDIDIILADAEKRTIEIEKKLKNLENIFDLTNISLDGG 853
Query: 1562 VELFDQMDEEFGWIEEMT 1579
+ +++ +++E EE T
Sbjct: 854 LNMYNDLEKEAS--EEST 869
Score = 45 (20.9 bits), Expect = 4.9e-83, Sum P(3) = 4.9e-83
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 847 ERILREFS---KRKDDDRNKRMEALKNNDVER 875
+R L E S +D+ RNK+ ++++ ND E+
Sbjct: 141 KRKLNEISYDNNEEDEFRNKKDDSMEMNDKEK 172
Score = 42 (19.8 bits), Expect = 2.2e-41, Sum P(3) = 2.2e-41
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 1540 ETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR--ASTK--EV 1595
ET + L ++ + + V LF QM I++ R+ P +LR ST E
Sbjct: 623 ETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYP-YLRIDGSTPGDER 681
Query: 1596 NATIANLSKKPSKNILF 1612
I ++ SK +F
Sbjct: 682 QVRINQFNEPNSKYFIF 698
Score = 42 (19.8 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 1181 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 1238
DN H+ + + HN D+++ EK + +L Q+L +R E + G
Sbjct: 218 DNNN--HNEDNNNHNDDNNNHNDDNNYNSEEKPNYLQEKLEQLLA--QTKRYTEKLAG 271
Score = 41 (19.5 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 414 VDQPLPVKNSSGPENSQMQYLRQLNR 439
+D+ +KN +S +++LR NR
Sbjct: 448 IDEAHRIKNEKSVLSSSVRFLRSENR 473
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 503 (182.1 bits), Expect = 3.6e-81, Sum P(3) = 3.6e-81
Identities = 110/311 (35%), Positives = 172/311 (55%)
Query: 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
+QP G +R YQ+ G++W+ L+ N +NGILADEMGLGKTVQ +A IA +++ +G
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVP 271
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKFN-VLVT 1106
GP L+ P + L NW +E ++ P + + Y G +++R +L + L+ + V++T
Sbjct: 272 GPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVIT 331
Query: 1107 TYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXX 1166
++E M DR+ L WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+
Sbjct: 332 SFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLS 391
Query: 1167 XXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226
P+VFD+ K+F WF E +D + E++ ++H LHQIL P
Sbjct: 392 ELWSLLNFLLPDVFDDLKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTP 446
Query: 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY 1286
F+LRR DV +PPK +V+ +S Q Y I + EK ++ +P
Sbjct: 447 FLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTG 506
Query: 1287 QAK--VYKTLN 1295
+ K K++N
Sbjct: 507 RPKRRTRKSIN 517
Score = 395 (144.1 bits), Expect = 3.6e-81, Sum P(3) = 3.6e-81
Identities = 116/330 (35%), Positives = 178/330 (53%)
Query: 1249 RCRMSAIQSAIYDWIKATGTL--RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKT 1304
R R S S I D+ L ++ PE ++ R V+ N +++V L N M LRK
Sbjct: 511 RTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKC 570
Query: 1305 CNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1358
CNHP L+ YP ++++F LV + GK ILDR+L +L++ GH+VLLFS MT +LD
Sbjct: 571 CNHPYLIEYP-IDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLD 629
Query: 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 1418
IL +Y R + R+DG+ S +RE + FN+ D + FIFL+S RA G G+NL +ADT
Sbjct: 630 ILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVSTRAGGLGINLTAADT 688
Query: 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLED 1478
VIIYD D NP+++ QA R HRIGQ + V V+Y + I QK E R+ LE
Sbjct: 689 VIIYDSDWNPQSDLQAQDRCHRIGQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEK 744
Query: 1479 DLAGKDRYIGSIEGLIRNNIQQYKIDMAD--EVINAGRFDQRTTHEERRMT----LETLL 1532
+ K+ + G GL N+ + +D + E++ + +++ ++ LE LL
Sbjct: 745 LIIHKNHFKGGQSGL---NLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDLELLL 801
Query: 1533 HDEERYQETVHDVPSLQEVN--RMIARSED 1560
+ + P +++ +++ SED
Sbjct: 802 DRSDLIDQMNASGPIKEKMGIFKILENSED 831
Score = 53 (23.7 bits), Expect = 3.6e-81, Sum P(3) = 3.6e-81
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 532 DRVSGKIAEDQLRHL--ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVS-PVGQGMSAV 588
DR S +I +L+HL +SN ++ Q L +++ ++ S V +G +++
Sbjct: 57 DRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSI 116
Query: 589 -TKEPAPVVVP--GKEEQQAPVSSVKSDQEV 616
E PV+ G+E++ +S V S +E+
Sbjct: 117 DASEEKPVMRKKRGREDESYNISEVMSKEEI 147
Score = 48 (22.0 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 703 YDVKDLLSEEGLEVLQKKRSEN-LKKISGILAVNLERKRIRPDLVLRL 749
+D+ L SE +++ K+R +N L + IL L R R++ D+ L +
Sbjct: 415 FDITSL-SETAEDIIAKEREQNVLHMLHQILTPFLLR-RLKSDVALEV 460
Score = 43 (20.2 bits), Expect = 4.0e-80, Sum P(3) = 4.0e-80
Identities = 18/80 (22%), Positives = 37/80 (46%)
Query: 783 QYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGV 842
+YR+ L E+ + + + T M ++QL+ Q +K+ LE + +N
Sbjct: 64 RYRRLQHLLEKSNI-YSKFLLTK---MEQQQLEE--QKKKEKLERKKESLKVKKGKNSID 117
Query: 843 AKYHERILREFSKRKDDDRN 862
A + ++R+ R+D+ N
Sbjct: 118 ASEEKPVMRKKRGREDESYN 137
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 763 (273.6 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 163/417 (39%), Positives = 255/417 (61%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY+++H V E+V +QPS+L G L YQ+ GL+W++SLYNN L+GILADEMGLGKT+Q +
Sbjct: 862 YYNISHVVKEKV-KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTI 920
Query: 1038 ALIAYLMEFKGNYG-PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096
+L AYL EFK N +LIIVP + L NW SE ++W PS++ I Y G K +R + ++++
Sbjct: 921 SLFAYLKEFKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHI-AKKL 979
Query: 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLL 1156
F++ +TT++ ++ ++S L K+ W YI++DE RMK+ +S L ++ + R+LL
Sbjct: 980 LEQTFDICITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILL 1039
Query: 1157 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN+ P++F + F WF + E + + + E++++I
Sbjct: 1040 TGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVY----EHITEEEQLLI 1095
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I+RLH +L PFMLRR +DV SLP K + +S Q +Y I+ G
Sbjct: 1096 INRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTKGF-------- 1147
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRI 1336
++V N K+++ N M+LRK NHP L + Y ++ ++ ++K GK +LDR+
Sbjct: 1148 -KQVNHNGSITTKIFQ---NIVMQLRKIVNHPYL-FLYDYNIDEN-IIKCSGKFEVLDRM 1201
Query: 1337 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
L KL + H+VL+FS MTKL++IL +YL++R Y R+DG L++R+ I FN++
Sbjct: 1202 LPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQFNNN 1258
Score = 170 (64.9 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 55/157 (35%), Positives = 79/157 (50%)
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
N + D IF+LS R+ GLNLQ+ADTVII+D D NP + QA+ R HRIGQK VKV
Sbjct: 1397 NGGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVF 1456
Query: 1451 Y------MEAVVDKISSHQKE--DELRSGGTVD-LEDDLAGKDRYIGSIEGLIRNNIQQY 1501
+E +V K + H+ D++ G + + +D +DR ++ +I+ N
Sbjct: 1457 RFITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYND---EDRQ-NKLKDIIQRN---Q 1509
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY 1538
K DM N + E LE L ++RY
Sbjct: 1510 KNDMTTHPTNPLLLNYYMKRNEEE--LEYFLDFDKRY 1544
Score = 100 (40.3 bits), Expect = 9.9e-75, Sum P(3) = 9.9e-75
Identities = 40/180 (22%), Positives = 82/180 (45%)
Query: 1487 IGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP 1546
+ +E L+ Q +K+ + D+VI AG F++ E+R+ L+ ++ ++ T H
Sbjct: 1461 LSGVEELVFKKAQ-HKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKNDMTTHPTN 1519
Query: 1547 SLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRYDQVPK----WLRASTKEVNA 1597
L +N + R+E+E+E F D E++ + + V ++ KE N
Sbjct: 1520 PLL-LNYYMKRNEEELEYFLDFDKRYFGEQYFSLLNTLNVENVDSGQFTYMSEDEKEENE 1578
Query: 1598 T-IANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
T ++++ KK K + GE + E +R + K+ ++ DD+ + + +E
Sbjct: 1579 TYLSSIIKKEKKE---------EEGEDDEENQRD-RNKEEDQDEDKDDDKDKDKDKDKEE 1628
Score = 44 (20.5 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 844 KY--HERILREFSKRKDDDRNKRMEALKNNDVERYREM 879
KY H L+ K+KD + + + KNN E+ EM
Sbjct: 108 KYLRHLEYLKR-KKKKDKENKSKSKKEKNNKNEKDDEM 144
Score = 41 (19.5 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 1756 SLSKRMPDELEEGEIAVSG--DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSI 1809
S+ K+ E EEGE D + + Q D+D+ +D+ + + K+++ I
Sbjct: 1583 SIIKKEKKE-EEGEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKKRKHI 1637
Score = 41 (19.5 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 1757 LSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR 1814
LS + E +E E G+ ++Q+ + D+DE +D+ + K K K + R
Sbjct: 1581 LSSIIKKEKKEEE----GEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKKR 1634
Score = 39 (18.8 bits), Expect = 1.2e-80, Sum P(4) = 1.2e-80
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 813 QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKR 856
Q+K+I Q RK +LE R + ++ + Y + I +KR
Sbjct: 714 QMKAIDQKRKIILEKEERER-MKLLKDNDIEAYMKLIKTAKNKR 756
Score = 39 (18.8 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 693 VNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKIS 729
+N S N + + ++ G E + +EN+K IS
Sbjct: 1327 MNMSGNENMNMSGNENMNMSGNENMNMSGNENIKMIS 1363
Score = 37 (18.1 bits), Expect = 9.6e-81, Sum P(4) = 9.6e-81
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 1618 VDSGEI----ETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1658
VDSG+ E E++ KE +E GE E + +RN
Sbjct: 1561 VDSGQFTYMSEDEKEENETYLSSIIKKEKKEEEGEDDEENQRDRN 1605
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 763 (273.6 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 163/417 (39%), Positives = 255/417 (61%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY+++H V E+V +QPS+L G L YQ+ GL+W++SLYNN L+GILADEMGLGKT+Q +
Sbjct: 862 YYNISHVVKEKV-KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTI 920
Query: 1038 ALIAYLMEFKGNYG-PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096
+L AYL EFK N +LIIVP + L NW SE ++W PS++ I Y G K +R + ++++
Sbjct: 921 SLFAYLKEFKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHI-AKKL 979
Query: 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLL 1156
F++ +TT++ ++ ++S L K+ W YI++DE RMK+ +S L ++ + R+LL
Sbjct: 980 LEQTFDICITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILL 1039
Query: 1157 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN+ P++F + F WF + E + + + E++++I
Sbjct: 1040 TGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVY----EHITEEEQLLI 1095
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I+RLH +L PFMLRR +DV SLP K + +S Q +Y I+ G
Sbjct: 1096 INRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTKGF-------- 1147
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRI 1336
++V N K+++ N M+LRK NHP L + Y ++ ++ ++K GK +LDR+
Sbjct: 1148 -KQVNHNGSITTKIFQ---NIVMQLRKIVNHPYL-FLYDYNIDEN-IIKCSGKFEVLDRM 1201
Query: 1337 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
L KL + H+VL+FS MTKL++IL +YL++R Y R+DG L++R+ I FN++
Sbjct: 1202 LPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQFNNN 1258
Score = 170 (64.9 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 55/157 (35%), Positives = 79/157 (50%)
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
N + D IF+LS R+ GLNLQ+ADTVII+D D NP + QA+ R HRIGQK VKV
Sbjct: 1397 NGGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVF 1456
Query: 1451 Y------MEAVVDKISSHQKE--DELRSGGTVD-LEDDLAGKDRYIGSIEGLIRNNIQQY 1501
+E +V K + H+ D++ G + + +D +DR ++ +I+ N
Sbjct: 1457 RFITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYND---EDRQ-NKLKDIIQRN---Q 1509
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY 1538
K DM N + E LE L ++RY
Sbjct: 1510 KNDMTTHPTNPLLLNYYMKRNEEE--LEYFLDFDKRY 1544
Score = 100 (40.3 bits), Expect = 9.9e-75, Sum P(3) = 9.9e-75
Identities = 40/180 (22%), Positives = 82/180 (45%)
Query: 1487 IGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP 1546
+ +E L+ Q +K+ + D+VI AG F++ E+R+ L+ ++ ++ T H
Sbjct: 1461 LSGVEELVFKKAQ-HKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKNDMTTHPTN 1519
Query: 1547 SLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRYDQVPK----WLRASTKEVNA 1597
L +N + R+E+E+E F D E++ + + V ++ KE N
Sbjct: 1520 PLL-LNYYMKRNEEELEYFLDFDKRYFGEQYFSLLNTLNVENVDSGQFTYMSEDEKEENE 1578
Query: 1598 T-IANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
T ++++ KK K + GE + E +R + K+ ++ DD+ + + +E
Sbjct: 1579 TYLSSIIKKEKKE---------EEGEDDEENQRD-RNKEEDQDEDKDDDKDKDKDKDKEE 1628
Score = 44 (20.5 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 844 KY--HERILREFSKRKDDDRNKRMEALKNNDVERYREM 879
KY H L+ K+KD + + + KNN E+ EM
Sbjct: 108 KYLRHLEYLKR-KKKKDKENKSKSKKEKNNKNEKDDEM 144
Score = 41 (19.5 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 1756 SLSKRMPDELEEGEIAVSG--DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSI 1809
S+ K+ E EEGE D + + Q D+D+ +D+ + + K+++ I
Sbjct: 1583 SIIKKEKKE-EEGEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKKRKHI 1637
Score = 41 (19.5 bits), Expect = 3.7e-81, Sum P(4) = 3.7e-81
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 1757 LSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR 1814
LS + E +E E G+ ++Q+ + D+DE +D+ + K K K + R
Sbjct: 1581 LSSIIKKEKKEEE----GEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKKR 1634
Score = 39 (18.8 bits), Expect = 1.2e-80, Sum P(4) = 1.2e-80
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 813 QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKR 856
Q+K+I Q RK +LE R + ++ + Y + I +KR
Sbjct: 714 QMKAIDQKRKIILEKEERER-MKLLKDNDIEAYMKLIKTAKNKR 756
Score = 39 (18.8 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 693 VNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKIS 729
+N S N + + ++ G E + +EN+K IS
Sbjct: 1327 MNMSGNENMNMSGNENMNMSGNENMNMSGNENIKMIS 1363
Score = 37 (18.1 bits), Expect = 9.6e-81, Sum P(4) = 9.6e-81
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 1618 VDSGEI----ETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1658
VDSG+ E E++ KE +E GE E + +RN
Sbjct: 1561 VDSGQFTYMSEDEKEENETYLSSIIKKEKKEEEGEDDEENQRDRN 1605
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 508 (183.9 bits), Expect = 8.1e-81, Sum P(3) = 8.1e-81
Identities = 146/509 (28%), Positives = 244/509 (47%)
Query: 797 ELMRQVQTS--QKAM--REKQLKSISQWR-KKLLEA---HWAIRDARTARNRGVAKYHER 848
+++ Q +T+ AM E+QL++ R +K+LE W R++ R R + E+
Sbjct: 16 DMVEQAETAVITPAMLEEEEQLEAAGLERERKMLEKARMSWD-RESVDIRYRRLQHLLEK 74
Query: 849 --ILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTE 906
I +F K + + E K +ER +E L + DA+E V+ E
Sbjct: 75 SNIYSKFLLTKMEQQQLE-EQKKKEKLERKKESLKVTKGKNSIDASEENTVVMRKKRGRE 133
Query: 907 EYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRNRFLEM 966
+ Y + ++ L E+++ +I++R +
Sbjct: 134 DESYNISEVMSKEEILSVAKKNKKETENESSCSNLCVEDLQKNR---DSNSIIKDRLSQ- 189
Query: 967 NAPRDGSSVNKYYSLAHAVNERVM--RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
R + ++ N + + +QP G +R YQ+ G++W+ L+ N +NGIL
Sbjct: 190 -TVRQNTKF--FFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGIL 246
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKTVQ +A IA +++ +G GP L+ P + L NW +E ++ P + + Y G+
Sbjct: 247 ADEMGLGKTVQCIATIALMIQ-RGVPGPFLVCGPLSTLPNWMAEFQRFTPEIPTMLYHGS 305
Query: 1085 KDQRSRLFS---QEVAALKFN-VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140
+ +R +L + + L+ + V++T++E M DR+ L WKY+I+DE R+K+ +
Sbjct: 306 QQERRKLVNHIHKRKGTLQIHPVVITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCR 365
Query: 1141 LARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPT 1200
L R+L R+ +LLLTGTPLQN+ P+VFD+ K+F WF E
Sbjct: 366 LIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSE--- 422
Query: 1201 HNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+D + E++ ++H LHQIL PF+LRR DV +PPK +V+ +S Q Y
Sbjct: 423 --TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFY 480
Query: 1261 DWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
I + EK V+ +P + K
Sbjct: 481 TAIVNRTITNMFGSSEKETVELSPTGRPK 509
Score = 398 (145.2 bits), Expect = 8.1e-81, Sum P(3) = 8.1e-81
Identities = 106/255 (41%), Positives = 148/255 (58%)
Query: 1249 RCRMSAIQSAIYDWIKATGTL--RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKT 1304
R R S S I D+ L ++ PE ++ R V+ N +++V L N M LRK
Sbjct: 511 RTRKSIDYSKIDDFPNELEKLISQIQPEVDRERAVVETNIPVESEVNLKLQNIMMLLRKC 570
Query: 1305 CNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1358
CNHP L+ YP ++++F LV + GK ILDR+L +L+ GH+VLLFS MT++LD
Sbjct: 571 CNHPYLIEYP-IDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHKVLLFSQMTRMLD 629
Query: 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 1418
IL +Y +R + R+DG+ S +RE + FN+ D D FIFL+S RA G G+NL +ADT
Sbjct: 630 ILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNT-DPDVFIFLVSTRAGGLGINLTAADT 688
Query: 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLED 1478
VIIYD D NP+++ QA R HRIGQ + V V+Y + I QK E R+ LE
Sbjct: 689 VIIYDSDWNPQSDLQAQDRCHRIGQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEK 744
Query: 1479 DLAGKDRYIGSIEGL 1493
+ K+ + G GL
Sbjct: 745 LIIHKNHFKGGQSGL 759
Score = 50 (22.7 bits), Expect = 6.7e-32, Sum P(3) = 6.7e-32
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 702 AYDVKDLLS-EEGLEVLQK--KRSENLKKISGILAVNLERKR 740
+Y++ +++S EE L V +K K +EN S + +L++ R
Sbjct: 136 SYNISEVMSKEEILSVAKKNKKETENESSCSNLCVEDLQKNR 177
Score = 48 (22.0 bits), Expect = 8.3e-32, Sum P(4) = 8.3e-32
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 703 YDVKDLLSEEGLEVLQKKRSEN-LKKISGILAVNLERKRIRPDLVLRL 749
+D+ L SE +++ K+R +N L + IL L R R++ D+ L +
Sbjct: 415 FDITSL-SETAEDIIAKEREQNVLHMLHQILTPFLLR-RLKSDVALEV 460
Score = 45 (20.9 bits), Expect = 8.3e-32, Sum P(4) = 8.3e-32
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 532 DRVSGKIAEDQLRHL--ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVS-PVGQGMSAV 588
DR S I +L+HL +SN ++ Q L +++ ++ S V +G +++
Sbjct: 57 DRESVDIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVTKGKNSI 116
Query: 589 -TKEPAPVVVP---GKEEQQAPVSSVKSDQEV 616
E VV+ G+E++ +S V S +E+
Sbjct: 117 DASEENTVVMRKKRGREDESYNISEVMSKEEI 148
Score = 41 (19.5 bits), Expect = 8.1e-81, Sum P(3) = 8.1e-81
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 386 VPSRQPVAIGNGLPP--IHPPQTSLNMTPGV 414
+P++QP + G L P + +T++ +TP +
Sbjct: 1 MPAQQPASSGGSLAPDMVEQAETAV-ITPAM 30
Score = 38 (18.4 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 781 DRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKK 823
D +YR+ L E+ + + ++ E+Q K RKK
Sbjct: 62 DIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKK 104
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 497 (180.0 bits), Expect = 1.5e-80, Sum P(4) = 1.5e-80
Identities = 108/298 (36%), Positives = 165/298 (55%)
Query: 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
+QP G +R YQ+ G++W+ L+ N +NGILADEMGLGKTVQ +A IA +++ +G
Sbjct: 214 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVP 272
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKFN-VLVT 1106
GP L+ P + L NW +E ++ P + + Y G + +R +L + L+ + V++T
Sbjct: 273 GPFLVCGPLSTLPNWMAEFQRFTPDIPTMLYHGTQQERRKLVKNIHKRKGTLQIHPVVIT 332
Query: 1107 TYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXX 1166
++E M DR+ L WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+
Sbjct: 333 SFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLS 392
Query: 1167 XXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226
P+VFD+ K+F WF E +D + E++ ++H LHQIL P
Sbjct: 393 ELWSLLNFLLPDVFDDLKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTP 447
Query: 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
F+LRR DV +PPK +V+ +S Q Y I + EK V+ +P
Sbjct: 448 FLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGCSEKETVELSP 505
Score = 400 (145.9 bits), Expect = 1.5e-80, Sum P(4) = 1.5e-80
Identities = 106/255 (41%), Positives = 148/255 (58%)
Query: 1249 RCRMSAIQSAIYDWIKATGTL--RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKT 1304
R R S S I D+ L ++ PE ++ R V+ N +++V L N M LRK
Sbjct: 512 RARKSINYSKIDDFPNELEKLISQMQPEVDRERAVVETNIPVESEVNLKLQNIMMLLRKC 571
Query: 1305 CNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1358
CNHP L+ YP ++++F LV + GK ILDR+L +L+ GH+VLLFS MT++LD
Sbjct: 572 CNHPYLIEYP-IDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQMTRMLD 630
Query: 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 1418
IL +Y +R + R+DG+ S +RE + FN+ D D FIFL+S RA G G+NL +ADT
Sbjct: 631 ILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNT-DPDVFIFLVSTRAGGLGINLTAADT 689
Query: 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLED 1478
VIIYD D NP+++ QA R HRIGQ + V V+Y + I QK E R+ LE
Sbjct: 690 VIIYDSDWNPQSDLQAQDRCHRIGQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEK 745
Query: 1479 DLAGKDRYIGSIEGL 1493
+ K+ + G GL
Sbjct: 746 LIIHKNHFKGGQSGL 760
Score = 48 (22.0 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 703 YDVKDLLSEEGLEVLQKKRSEN-LKKISGILAVNLERKRIRPDLVLRL 749
+D+ L SE +++ K+R +N L + IL L R R++ D+ L +
Sbjct: 416 FDITSL-SETAEDIIAKEREQNVLHMLHQILTPFLLR-RLKSDVALEV 461
Score = 47 (21.6 bits), Expect = 1.5e-80, Sum P(4) = 1.5e-80
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 702 AYDVKDLLS-EEGLEVLQKKRSENLKKIS 729
+Y++ +++S EE L V +K + EN +K S
Sbjct: 136 SYNIAEVMSKEEILSVAKKNKKENEQKES 164
Score = 46 (21.3 bits), Expect = 1.5e-80, Sum P(4) = 1.5e-80
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 386 VPSRQPVAIGNGLPP--IHPPQTSL 408
+P++QP + G L P + PP+ ++
Sbjct: 1 MPAQQPASSGGSLAPDTVEPPEPAV 25
Score = 41 (19.5 bits), Expect = 6.4e-80, Sum P(4) = 6.4e-80
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 781 DRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNR 840
D +YR+ L E+ + + + T M ++QL+ Q +K+ LE +N
Sbjct: 62 DIRYRRLQHLLEKSNI-YSKFLLTK---MEQQQLEE--QKKKEKLERKKETLKVTKGKNS 115
Query: 841 -GVAKYHERILREFSKRKDDDRN 862
G ++ + + R+ R+D+ N
Sbjct: 116 IGASEENPVVTRKKRGREDESYN 138
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 498 (180.4 bits), Expect = 1.8e-80, Sum P(3) = 1.8e-80
Identities = 109/303 (35%), Positives = 166/303 (54%)
Query: 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
+QP G +R YQ+ G++W+ L+ N +NGILADEMGLGKTVQ +A IA +++ +G
Sbjct: 191 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVP 249
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKFN-VLVT 1106
GP L+ P + L NW +E ++ P + + Y G + +R L + L+ + V++T
Sbjct: 250 GPFLVCGPLSTLPNWMAEFKRFTPEIPTMLYHGTQQERRILVKHIHERKGTLQIHPVVIT 309
Query: 1107 TYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXX 1166
++E M DR+ L WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+
Sbjct: 310 SFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLS 369
Query: 1167 XXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226
P+VFD+ K+F WF E +D + E++ ++H LHQIL P
Sbjct: 370 ELWSLLNFLLPDVFDDLKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTP 424
Query: 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY 1286
F+LRR DV +PPK +V+ +S Q Y I + EK V+ +P
Sbjct: 425 FLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETVELSPTG 484
Query: 1287 QAK 1289
+ K
Sbjct: 485 RPK 487
Score = 405 (147.6 bits), Expect = 1.8e-80, Sum P(3) = 1.8e-80
Identities = 107/255 (41%), Positives = 148/255 (58%)
Query: 1249 RCRMSAIQSAIYDWIKATGTL--RVDPE-DEKRRVQKNPI-YQAKVYKTLNNRCMELRKT 1304
R R S S I D+ L ++ PE D +R + + + +++V L N M LRK
Sbjct: 489 RTRKSVDYSKIDDFPNELEKLISQIQPEVDRERTIVETSVPIESEVNLKLQNIMMLLRKC 548
Query: 1305 CNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1358
CNHP L+ YP ++++F LV + GK ILDR+L +L+ GH+VLLFS MT++LD
Sbjct: 549 CNHPYLIEYP-IDPVTQEFKVDEELVTNSGKFLILDRMLPELKTRGHKVLLFSQMTRMLD 607
Query: 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 1418
IL +Y +R + R+DG+ S +RE I FN+ D D FIFL+S RA G G+NL +ADT
Sbjct: 608 ILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNT-DPDVFIFLVSTRAGGLGINLTAADT 666
Query: 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLED 1478
VIIYD D NP+++ QA R HRIGQ R V V+Y + I QK E R+ LE
Sbjct: 667 VIIYDSDWNPQSDLQAQDRCHRIGQTRPV-VVYRLVTANTID--QKIVE-RAAAKRKLEK 722
Query: 1479 DLAGKDRYIGSIEGL 1493
+ K+ + G GL
Sbjct: 723 LIIHKNHFKGGQSGL 737
Score = 48 (22.0 bits), Expect = 2.3e-32, Sum P(3) = 2.3e-32
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 703 YDVKDLLSEEGLEVLQKKRSEN-LKKISGILAVNLERKRIRPDLVLRL 749
+D+ L SE +++ K+R +N L + IL L R R++ D+ L +
Sbjct: 393 FDITSL-SETAEDIIAKEREQNVLHMLHQILTPFLLR-RLKSDVALEV 438
Score = 40 (19.1 bits), Expect = 1.8e-80, Sum P(3) = 1.8e-80
Identities = 18/82 (21%), Positives = 35/82 (42%)
Query: 781 DRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNR 840
D +YR+ L E+ + + ++ E+Q K RKK E+ +D +N
Sbjct: 41 DIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKK--ESLKVTKD----KNS 94
Query: 841 GVAKYHERILREFSKRKDDDRN 862
A ++++ R+D+ N
Sbjct: 95 IDASEENAVIKKKRGREDESYN 116
Score = 39 (18.8 bits), Expect = 2.3e-80, Sum P(3) = 2.3e-80
Identities = 20/91 (21%), Positives = 41/91 (45%)
Query: 532 DRVSGKIAEDQLRHL--ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVS-PVGQGMSAV 588
DR S I +L+HL +SN ++ Q L +++ ++ S V + +++
Sbjct: 36 DRESVDIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVTKDKNSI 95
Query: 589 TKEPAPVVVP---GKEEQQAPVSSVKSDQEV 616
V+ G+E++ +S V S +E+
Sbjct: 96 DASEENAVIKKKRGREDESYNISEVMSKEEI 126
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 467 (169.5 bits), Expect = 2.6e-80, Sum P(5) = 2.6e-80
Identities = 147/460 (31%), Positives = 228/460 (49%)
Query: 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR 1278
RLHQ LEP++LRR +DVE SLP KV +LR M+++Q Y WI D R
Sbjct: 732 RLHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNF------DALR 785
Query: 1279 RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-FS--DLSKD----FLVKSCGKLW 1331
+ ++ T N +EL+K CNH L P F L +D L+K GKL
Sbjct: 786 KGKRGST------STFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQTLLKGSGKLV 839
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
+LD++L +L+ TGHRVL+FS M ++LD+L +YLQ R ++R+DG+ E R A+ FN
Sbjct: 840 LLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFN 899
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV-- 1449
+ S F FLLS RA G G+NL +ADTVII+D D NP+N+ QA ARAHRIGQK +V +
Sbjct: 900 AEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYR 959
Query: 1450 -IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADE 1508
+ +V ++I K+ + + D G+ S G N+ K D++
Sbjct: 960 LVTARSVEEQIVERAKQKMVLDHLVIQ-RMDTTGRTVLDKSGNGHSSNSNPFNKDDLS-A 1017
Query: 1509 VINAGR---FDQRTTHEERRMT-LETLLHDEERYQET----VHDVPSLQEVNRMIARSED 1560
++ G F H++ + ++ +L E E D+ S +V + A E+
Sbjct: 1018 ILKFGAEELFKDEQEHDDDLVCDIDEILRRAETRNEDPEMPADDLLSAFKVASIAAFEEE 1077
Query: 1561 EVELFDQMDEEFGWIEEMTR-YDQV-PKWLRAST--KEVNATIANLSKKPSKNILFGSNI 1616
+ + D+ E+ ++ +D + P+ R + +E + +L P + N
Sbjct: 1078 PSDSVSKQDQNAAGEEDDSKDWDDIIPEGFRKAIDDQERAKEMEDLYLPPRRKTAANQNE 1137
Query: 1617 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
G + +G KGK+ + D + S+ S D+
Sbjct: 1138 G------KRGAGKGGKGKQQADDSGGDSDYELGSDGSGDD 1171
Score = 451 (163.8 bits), Expect = 2.6e-80, Sum P(5) = 2.6e-80
Identities = 107/285 (37%), Positives = 156/285 (54%)
Query: 988 RVMRQPSMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF 1046
R+ QP L +G TLRDYQ+ GL W+L + + + ILADEMGLGKT+Q + + L +
Sbjct: 514 RIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKI 573
Query: 1047 KGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-------AL 1099
YGP L +VP + + W+ E W P ++ + Y+G D +SR Q+ L
Sbjct: 574 HHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLG--DIKSRELIQQYEWQFESSKRL 631
Query: 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGT 1159
KFN ++TTYE ++ D+ L + W +++DEA R+K+ +S+L + L + RLL+TGT
Sbjct: 632 KFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGT 691
Query: 1160 PLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTH-NADDDWLETEKKVIIIH 1218
PLQN P+ FD W + F+ + H NA+D
Sbjct: 692 PLQNSLKELWALLHFIMPDKFDT------W--ENFEVQ---HGNAEDKGYT--------- 731
Query: 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
RLHQ LEP++LRR +DVE SLP KV +LR M+++Q Y WI
Sbjct: 732 RLHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWI 776
Score = 55 (24.4 bits), Expect = 2.6e-80, Sum P(5) = 2.6e-80
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 298 NHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
N N +N + S P P ++ + T AG+ P A+ A PT S S
Sbjct: 116 NQSINNANTSS-SLPKPEQNEEEDNETEAGQQQP-ASDASADESSDSSANVSPTSSSS 171
Score = 53 (23.7 bits), Expect = 5.6e-80, Sum P(6) = 5.6e-80
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 1829 PLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN--LPSRKIA 1886
PLHR ++ ++ K A+L+ EM H H+ E SK+ P K
Sbjct: 1207 PLHRMEAIACDAELQEKPLAELKRLGEM-LHDRCVQFLHEHKEEESKTAATDETPGAKQR 1265
Query: 1887 NAPKSRASLKTG 1898
A ++ S+K G
Sbjct: 1266 RA-RATFSVKLG 1276
Score = 51 (23.0 bits), Expect = 2.6e-80, Sum P(5) = 2.6e-80
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 834 ARTARNRGVAKYHERILREFSKRK--DDDRNKRMEALKNNDVERYREMLLEQQT 885
A T+R++ + R ++ FS DDD +KR + Y+E ++ T
Sbjct: 236 ATTSRSKLAQQQQRRRVKPFSSEDSDDDDASKRCATRRKGAAVSYKEASEDEAT 289
Score = 49 (22.3 bits), Expect = 2.3e-79, Sum P(6) = 2.3e-79
Identities = 31/132 (23%), Positives = 57/132 (43%)
Query: 528 VNNQDRVSGKIAEDQLRHLESNGKDA-QAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMS 586
+NN + S + + + E N +A Q +S+ + +E+ D A VSP S
Sbjct: 119 INNAN-TSSSLPKPEQNEEEDNETEAGQQQPASDASA---DES--SDSSANVSPTSSSSS 172
Query: 587 AVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDA 646
+ +E ++ ++ P ++ KS + + SD +D + +VS
Sbjct: 173 SEEEEEDYRPKRTRQARKPPTAAEKSKKAPAPKNKKKTWDSD-ESDESEDSDDEVSTA-- 229
Query: 647 VQVKKPAQATTA 658
Q +KPA ATT+
Sbjct: 230 -QKRKPA-ATTS 239
Score = 47 (21.6 bits), Expect = 2.6e-80, Sum P(5) = 2.6e-80
Identities = 21/69 (30%), Positives = 23/69 (33%)
Query: 1617 GVDSGEIETERKR-GPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQXXXXXXXXXXXX 1675
GV + E E ER R G K KK KE + Y E Y
Sbjct: 1624 GVTTEEKEKERDRSGGKKKKKDKDKERSGQ-ARYPETGIPTSGRYADPPLKRKRDENDAD 1682
Query: 1676 XYSGAVGAP 1684
SG GAP
Sbjct: 1683 ASSGLAGAP 1691
Score = 43 (20.2 bits), Expect = 6.8e-80, Sum P(5) = 6.8e-80
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1617 GVDSGEIETERKRGPKGKKYPN 1638
G G ER R P+ ++YP+
Sbjct: 1799 GGGQGSYHRERDRRPEKRRYPS 1820
Score = 39 (18.8 bits), Expect = 1.8e-79, Sum P(5) = 1.8e-79
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 1867 HDQSEPSSKSRRNLPSRKIANAPKSRASLKTGR 1899
+ Q +PS+ S N P+ + P +A R
Sbjct: 1441 NSQVDPSTASPHNAPATEQHGDPAKKAKKSKAR 1473
Score = 39 (18.8 bits), Expect = 1.8e-79, Sum P(5) = 1.8e-79
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 1877 RRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAA 1911
R+ P AN K+ + + ++ P EDAA
Sbjct: 1396 RQRRPRASRANDAKAASQSASSTIDAKPHDGEDAA 1430
Score = 38 (18.4 bits), Expect = 5.6e-80, Sum P(6) = 5.6e-80
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 1919 DGKIANASGSSNFSAKMSD 1937
D K A+ S SS AK D
Sbjct: 1407 DAKAASQSASSTIDAKPHD 1425
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 491 (177.9 bits), Expect = 8.5e-80, Sum P(3) = 8.5e-80
Identities = 108/303 (35%), Positives = 166/303 (54%)
Query: 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
+QP G +R YQ+ G++W+ L+ N +NGILADEMGLGKTVQ +A IA +++ +G
Sbjct: 196 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVP 254
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKFN-VLVT 1106
GP L+ P + L NW +E ++ P + + Y G ++ R +L + L+ + V+VT
Sbjct: 255 GPFLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRRKLVKNIHKRQGTLQIHPVVVT 314
Query: 1107 TYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXX 1166
++E M D++ L WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+
Sbjct: 315 SFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLS 374
Query: 1167 XXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226
P+VFD+ K+F WF E +D + E++ ++H LHQIL P
Sbjct: 375 ELWSLLNFLLPDVFDDLKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTP 429
Query: 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY 1286
F+LRR DV +PPK +V+ + Q Y I + EK V+ +P
Sbjct: 430 FLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVNRTIANMFGSCEKETVELSPTG 489
Query: 1287 QAK 1289
+ K
Sbjct: 490 RPK 492
Score = 398 (145.2 bits), Expect = 8.5e-80, Sum P(3) = 8.5e-80
Identities = 105/275 (38%), Positives = 159/275 (57%)
Query: 1270 RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF---- 1322
++ PE + R V+ N +++V L N M LRK CNHP ++ YP ++++F
Sbjct: 517 QIQPEVNRERTVVEGNIPIESEVNLKLRNIMMLLRKCCNHPYMIEYP-IDPVTQEFKIDE 575
Query: 1323 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
LV + GK ILDR+L +L++ GH+VL+FS MT +LDIL +Y R ++ R+DG+ S
Sbjct: 576 ELVTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYS 635
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
+RE I FN+ D D F+FL+S RA G G+NL +ADTVIIYD D NP+++ QA R HRI
Sbjct: 636 EREKNIYSFNT-DPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRI 694
Query: 1442 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 1501
GQ + V V+Y + I QK E R+ LE + K+ + G GL ++ + +
Sbjct: 695 GQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEKLIIHKNHFKGGQSGLSQS--KNF 748
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1536
+D A E++ R E + + E ++ DE+
Sbjct: 749 -LD-AKELMEL--LKSRDYEREVKGSREKVISDED 779
Score = 55 (24.4 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 29/127 (22%), Positives = 56/127 (44%)
Query: 703 YDVKDLLSEEGLEVLQKKRSEN-LKKISGILAVNLERKRIRPDLVLRLQIEXXXXXXXXX 761
+D+ L SE +++ K+R +N L + IL L R R++ D+ L + +
Sbjct: 398 FDITSL-SETAEDIIAKEREQNVLHMLHQILTPFLLR-RLKSDVALEVPPKREVVVYAPL 455
Query: 762 XXXXXXEVDQQQQEIMAMPDRQYRKFVRLCERQRVELM---RQVQTSQKAMREKQLKSIS 818
++Q+ A+ +R CE++ VEL R + S+K++ +L
Sbjct: 456 -------CNKQEIFYTAIVNRTIANMFGSCEKETVELSPTGRPKRRSRKSINYSELDQFP 508
Query: 819 QWRKKLL 825
+KL+
Sbjct: 509 SELEKLI 515
Score = 49 (22.3 bits), Expect = 8.5e-80, Sum P(3) = 8.5e-80
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 532 DRVSGKIAEDQLRHL--ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVS-PVGQGMSAV 588
DR S +I +L+HL +SN ++ Q L +++ +K S + +G S V
Sbjct: 41 DRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLEKKKRSLKLTEGKSLV 100
Query: 589 T---KEPAPVVVPGKEEQQAPVSSVKSDQEV 616
++P G+E++ +S V S +E+
Sbjct: 101 DGNGEKPVMKKKRGREDESYNISEVMSKEEI 131
Score = 47 (21.6 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 866 EALKNNDVERYREMLLEQQTSIPGDAAE-RYAVLSSFLTQTEEY 908
E L+ +E+ R+ML E Q S ++ E RY L L ++ Y
Sbjct: 19 EQLEAAGLEKERKMLEEAQKSWDRESTEIRYRRLQHLLEKSNIY 62
Score = 42 (19.8 bits), Expect = 4.6e-79, Sum P(3) = 4.6e-79
Identities = 8/36 (22%), Positives = 22/36 (61%)
Query: 702 AYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLE 737
+Y++ +++S+E + + KK +N + S ++ +E
Sbjct: 119 SYNISEVMSKEEILSVAKKHKDNEDESSSTTSLCVE 154
Score = 40 (19.1 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 1127 IIDEAQRMKDRESVLARDLDRYRCQRRLL 1155
+++EAQ+ DRES ++ RYR + LL
Sbjct: 32 MLEEAQKSWDREST---EI-RYRRLQHLL 56
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 457 (165.9 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 105/280 (37%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP+ L L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 479 KQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 538
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP LI+VP + L +W+ E W P V+ + Y+G R+ + E LKFN
Sbjct: 539 LYGPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 598
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 599 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 658
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 659 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 699
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 700 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 739
Score = 446 (162.1 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 131/387 (33%), Positives = 203/387 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 696 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 746
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSK-----DFLVKSCGKLWIL 1333
+ K + N MEL+K CNH L+ P S+ L++S GKL +L
Sbjct: 747 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIRAPEDSERETGQEVLQSLIRSSGKLILL 803
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 804 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 863
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 864 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 923
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 924 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 980
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 1570
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 981 FGAEDLFKEIEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1038
Query: 1571 EFGWIEEMTR--YDQV-PKWLRASTKE 1594
E +EE +D++ P+ R +E
Sbjct: 1039 EEE-LEERPHKDWDEIIPEEQRKKVEE 1064
Score = 67 (28.6 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 36/159 (22%), Positives = 65/159 (40%)
Query: 1731 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 1790
+LT + PV K L+ R L K + LE+ SG+ ++ R
Sbjct: 1298 KLTDKILPVETDKKPQGKQLQTRVDYLLKLLRKGLEKKGTVTSGEEAKLKKRK-----PR 1352
Query: 1791 DEGEDEQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY--- 1846
+ E++ P++K + + + PRH+ EE D L + + + +NK
Sbjct: 1353 VKKENKA---PRLKDEHGLELSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKENKENKE 1409
Query: 1847 -PAQLRTDTE-----MKAHGESNSLRHDQSEPSSKSRRN 1879
P R D E K+ + ++ ++ SSKS+R+
Sbjct: 1410 KPVSSRKDREGDKEKKKSKDKKEKVKGGDAKSSSKSKRS 1448
Score = 46 (21.3 bits), Expect = 9.3e-80, Sum P(4) = 9.3e-80
Identities = 20/103 (19%), Positives = 41/103 (39%)
Query: 528 VNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSA 587
V +R + + ++ S+G ++ + + L K+E + D QG SA
Sbjct: 109 VRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQDPSE--DDQEQGSSA 166
Query: 588 VTKEPAPVVVPGKE--EQQAPVSSVKSDQEVECGLLRTQQQSD 628
++ V + + P VK +++ G + Q+ SD
Sbjct: 167 ESEAEQKKVKARRPIPRRTVPKPQVKKQPKIQRGKRKKQESSD 209
Score = 46 (21.3 bits), Expect = 1.4e-77, Sum P(4) = 1.4e-77
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 1618 VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYP 1661
V SGE +KR P+ KK + DE G E SS + P
Sbjct: 1338 VTSGEEAKLKKRKPRVKKENKAPRLKDEHG--LELSSPRHSDNP 1379
Score = 42 (19.8 bits), Expect = 5.2e-36, Sum P(3) = 5.2e-36
Identities = 34/159 (21%), Positives = 62/159 (38%)
Query: 1764 ELEEGEIAVSG-DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEE 1822
E E E++ S D + + ++ DE E E+ +P I R VE EE
Sbjct: 1010 ETRENEVSTSATDELLSQFKVANFATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EE 1066
Query: 1823 RSCTDTPLHRGDSSLLPFQMDNKYPAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRN 1879
R ++ +LP + AQ +DTE K + +S +++ S ++
Sbjct: 1067 RQKELEEIY-----MLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK- 1120
Query: 1880 LPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESW 1918
PK R ++ R + + G T+ F +++
Sbjct: 1121 ---------PKRRGRPRSVRKDLVEGFTDAEIRRFIKAY 1150
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 467 (169.5 bits), Expect = 2.3e-79, Sum P(5) = 2.3e-79
Identities = 108/236 (45%), Positives = 146/236 (61%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 682 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 740
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 741 TSG-----------FLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILL 789
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 790 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 849
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 850 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 905
Score = 452 (164.2 bits), Expect = 2.3e-79, Sum P(5) = 2.3e-79
Identities = 105/281 (37%), Positives = 157/281 (55%)
Query: 991 RQPSML---RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + + LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 464 KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 523
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W P ++ + Y+G R+ + + E LKFN
Sbjct: 524 QLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFN 583
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE ++ D+S L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 584 ILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 643
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N PE F + W + F++E H ++ LH+
Sbjct: 644 NSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGREYGYAS--------LHK 684
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 685 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 725
Score = 58 (25.5 bits), Expect = 2.3e-79, Sum P(5) = 2.3e-79
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E R PL GD L F++ N +
Sbjct: 968 GAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN-FSNMDED 1026
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P S+ RR
Sbjct: 1027 DIELEP--ERNSRNWEEIIPESQRRR 1050
Score = 43 (20.2 bits), Expect = 2.3e-79, Sum P(5) = 2.3e-79
Identities = 15/69 (21%), Positives = 27/69 (39%)
Query: 547 ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAP 606
ES + S + S K++ A KA S + ++ V+ +++QQ
Sbjct: 52 ESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKA 111
Query: 607 VSSVKSDQE 615
SS +E
Sbjct: 112 ASSDSGSEE 120
Score = 42 (19.8 bits), Expect = 1.1e-77, Sum P(5) = 1.1e-77
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGE---IAVSGDS 1776
LTQ + P P K L+ R L K + +L E +A +G+S
Sbjct: 1280 LTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNS 1327
Score = 39 (18.8 bits), Expect = 2.3e-79, Sum P(5) = 2.3e-79
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 855 KRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
K+KD + + ++ DVE Y Q + D ++Y ++ + + +
Sbjct: 349 KKKDQETKRWLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 396
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 456 (165.6 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 104/280 (37%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP+ L L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 474 KQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 533
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP LI+VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 534 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 593
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 594 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 653
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 654 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 694
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 695 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 734
Score = 441 (160.3 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 103/236 (43%), Positives = 144/236 (61%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 741
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 1333
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 742 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILL 798
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 799 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 858
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 859 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 914
Score = 50 (22.7 bits), Expect = 2.3e-79, Sum P(3) = 2.3e-79
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 566 KEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ 625
KEEA +G + SP +G + K+ P ++EQ+ S+ ++ + R
Sbjct: 124 KEEASSGSESG--SPKRRGQRQLKKQEKWKREPSEDEQEQGTSAESEPEQKKVKARRPVP 181
Query: 626 QSDFPADRGK 635
+ P R K
Sbjct: 182 RRTVPKPRVK 191
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 514 (186.0 bits), Expect = 2.6e-79, Sum P(3) = 2.6e-79
Identities = 115/304 (37%), Positives = 174/304 (57%)
Query: 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
+QP + G +R YQ+ G++W+ L+ N +NGILADEMGLGKT+Q +A IA ++E +G
Sbjct: 212 QQPKIFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTIQCIATIALMVE-RGVP 270
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ---EVAALKFN-VLVT 1106
GP L+ P + L NW SE ++ P + + Y GA+ +R +L + +LK + V++T
Sbjct: 271 GPFLVCGPLSTLPNWMSEFKRFTPEIPLMLYHGAQQERRKLVRKIHGRQGSLKIHPVVIT 330
Query: 1107 TYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXX 1166
++E M DR+ L WKY+I+DE R+K+ L R+L R+ +LLLTGTPLQN+
Sbjct: 331 SFEIAMRDRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTGTPLQNNLA 390
Query: 1167 XXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226
P+VFD+ K+F WF T A+D + EK+ I+H LHQIL P
Sbjct: 391 ELWSLLNFLLPDVFDDLKSFESWFDIT----SITETAEDI-IAKEKEQNILHMLHQILTP 445
Query: 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR-VDPEDEKRRVQKNPI 1285
F+LRR DV +PPK +V+ ++ Q Y I T+R + +E+ V+ +P
Sbjct: 446 FLLRRLKSDVALEVPPKREVVVYAPLAKKQETFYTAI-VNRTIRNLLGNNEEEVVELSPT 504
Query: 1286 YQAK 1289
+ K
Sbjct: 505 GRPK 508
Score = 376 (137.4 bits), Expect = 2.6e-79, Sum P(3) = 2.6e-79
Identities = 97/235 (41%), Positives = 137/235 (58%)
Query: 1270 RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF---- 1322
R E K R V+ + ++V L N M LRK CNHP L+ YP ++ F
Sbjct: 534 RTQEEVVKERPVVEVSMPMDSEVNLKLQNIMMLLRKCCNHPYLIEYP-LDPATQQFKVDE 592
Query: 1323 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
LVK+ GK +LDR+L +L++ GH+VL+FS MT +LDIL +Y R + R+DG+ S
Sbjct: 593 DLVKNSGKFLLLDRMLPELKKRGHKVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYS 652
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
DRE + FN+ D + F+FL+S RA G G+NL +ADTVIIYD D NP+++ QA R HRI
Sbjct: 653 DREENMHQFNN-DPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRI 711
Query: 1442 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRN 1496
GQ + V V+Y + I QK E R+ LE + K+++ G GL ++
Sbjct: 712 GQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEKLIIHKNQFKGGKSGLAQS 762
Score = 42 (19.8 bits), Expect = 2.6e-79, Sum P(3) = 2.6e-79
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 580 PVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQ 626
P GQ EP P G++E + + ++++E L ++Q
Sbjct: 1 PTGQAARVFVAEP-PGAEMGEQEVVITPAMLAEEEQLEAAGLEKERQ 46
Score = 41 (19.5 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 780 PDRQYRKFVRLCERQRV---ELMRQV-QTSQKAMREKQLKSIS 818
P R+ RK V CE +L + + +T ++ ++E+ + +S
Sbjct: 507 PKRRSRKLVDYCEEHNGSPDDLEKLINRTQEEVVKERPVVEVS 549
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 456 (165.6 bits), Expect = 3.0e-79, Sum P(4) = 3.0e-79
Identities = 104/280 (37%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP+ L L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 472 KQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQ 531
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP LI+VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 532 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 592 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 651
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 652 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 692
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 693 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 732
Score = 442 (160.7 bits), Expect = 3.0e-79, Sum P(4) = 3.0e-79
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 689 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 739
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 1333
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 740 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILL 796
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 797 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 856
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 857 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 916
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 917 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-ILENNSG--RSNSNPFNKEELTAILK 973
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 1570
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 974 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1031
Query: 1571 EFGWIEEMTR--YDQV-PKWLRASTKE 1594
E +EE +D++ P+ R +E
Sbjct: 1032 EEE-LEERPHKDWDEIIPEEQRKKVEE 1057
Score = 62 (26.9 bits), Expect = 3.0e-79, Sum P(4) = 3.0e-79
Identities = 35/162 (21%), Positives = 64/162 (39%)
Query: 1731 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 1790
+LT + PV K L+ R L K + LE+ + AV+G ++ R
Sbjct: 1291 KLTDKILPVETDKKPQGKQLQTRADYLLKLLRKGLEK-KGAVTGGEEAKLKKR----KPR 1345
Query: 1791 DEGEDEQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 1849
+ E++ P++K + I + PRH+ EE D L + + +NK +
Sbjct: 1346 VKKENKV---PRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKE 1402
Query: 1850 LRTDTEMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 1889
+ + G+ + D+ E P S ++ K + P
Sbjct: 1403 KQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGP 1444
Score = 52 (23.4 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 43/176 (24%), Positives = 69/176 (39%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 1786
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 968 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1026
Query: 1787 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 1846
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1027 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1078
Query: 1847 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKS-RASLKTG 1898
AQ +DTE K + +S ++E S ++ P R+ P+S R L G
Sbjct: 1079 KAQTNDSDSDTESKRQAQRSSASESETEDSDDDKK--PKRR--GRPRSVRKDLVEG 1130
Score = 51 (23.0 bits), Expect = 3.0e-79, Sum P(4) = 3.0e-79
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 566 KEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ 625
KEEA +G + SP +G + K+ P ++EQ+ S+ ++ + R
Sbjct: 125 KEEASSGSESG--SPKRRGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVP 182
Query: 626 QSDFPADRGK 635
+ P R K
Sbjct: 183 RRTVPKPRVK 192
Score = 39 (18.8 bits), Expect = 7.7e-77, Sum P(4) = 7.7e-77
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1628 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1411 KEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPV 1445
Score = 39 (18.8 bits), Expect = 7.7e-77, Sum P(4) = 7.7e-77
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 1618 VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYP 1661
V GE +KR P+ KK + +E G E SS + P
Sbjct: 1331 VTGGEEAKLKKRKPRVKKENKVPRLKEEHG--IELSSPRHSDNP 1372
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 455 (165.2 bits), Expect = 5.7e-79, Sum P(4) = 5.7e-79
Identities = 103/280 (36%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QPS + + L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 474 KQPSYIGSENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQ 533
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP L++VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 534 LYGPFLVVVPLSTLTSWQREFEVWAPEINVVVYIGDLMSRNMIREYEWIHSQSKRLKFNA 593
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L + W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 594 LITTYEILLKDKAVLGSISWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 653
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 654 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 694
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 695 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 734
Score = 450 (163.5 bits), Expect = 5.7e-79, Sum P(4) = 5.7e-79
Identities = 129/387 (33%), Positives = 203/387 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 741
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF-----LVKSCGKLWIL 1333
+ K + N MEL+K CNH L+ P ++ L++S GKL +L
Sbjct: 742 LSKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGIETLQSLIRSSGKLILL 798
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 799 DKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 858
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 859 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 918
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 919 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLDNNSG--RSNSNPFNKEELTAILK 975
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 1570
G D E + + DE R ET + S + ++++ + +V F M+E
Sbjct: 976 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFK-KVANFATMEE 1034
Query: 1571 EFGWIEEMTRYDQ---VPKWLRASTKE 1594
E ++E + D +P+ R +E
Sbjct: 1035 EETELDERPQKDWDDIIPEEQRKKVEE 1061
Score = 62 (26.9 bits), Expect = 5.7e-79, Sum P(4) = 5.7e-79
Identities = 32/162 (19%), Positives = 62/162 (38%)
Query: 1731 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 1790
+L+ + PV K L+ R L K + +LE+ E +M + G +
Sbjct: 1295 KLSDKILPVETDKKPQGKQLQTRVDYLLKLLKKDLEKKE-------NMKDGEEGKLKKRK 1347
Query: 1791 DEGEDEQVLQPKIKRKRSIRVRP-RHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 1849
+ E PK+K + + P RH+ + EE D L + + +NK +
Sbjct: 1348 PRVKKENKA-PKVKDEHGNELSPPRHSDNQSEEGEVKDDGLDKSPVKKKQKKKENKENKE 1406
Query: 1850 LRTDT--EMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAP 1889
+T + E ++ E + + +P ++ K + P
Sbjct: 1407 KQTSSKKEKESDKEKKKTKEKKEKPKGGEAKSGSKGKRSQGP 1448
Score = 42 (19.8 bits), Expect = 2.8e-75, Sum P(6) = 2.8e-75
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 1593 KEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIG 1647
K++ + L K K++ N+ GE +KR P+ KK +V DE G
Sbjct: 1312 KQLQTRVDYLLKLLKKDLEKKENM--KDGEEGKLKKRKPRVKKENKAPKVKDEHG 1364
Score = 42 (19.8 bits), Expect = 2.8e-75, Sum P(6) = 2.8e-75
Identities = 21/88 (23%), Positives = 32/88 (36%)
Query: 1777 HMDHQQSGSWTHDRD---EGEDEQVLQPKIKRKRSIR-VRPRHTVERPEERSCTDTPLHR 1832
H + G W DR G Q+ + + + H +R RS D P HR
Sbjct: 1639 HFSNTDRGEWQRDRKFSYSGNSNQMWGGERHHQYEQHWYKDHHYGDR---RSRGD-P-HR 1693
Query: 1833 GDSSLLPFQMDNKYP-AQLRTDTEMKAH 1859
+ P + K P Q +D + + H
Sbjct: 1694 SSGNYRPNNLSRKRPYEQYSSDRDHRGH 1721
Score = 41 (19.5 bits), Expect = 7.9e-78, Sum P(5) = 7.9e-78
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 547 ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQG 584
+S G++ S+++ S EEA +G D A+ S QG
Sbjct: 6 KSQGEEGSVHSNASSHSA-SEEA-SGSDSASQSESEQG 41
Score = 41 (19.5 bits), Expect = 3.6e-75, Sum P(6) = 3.6e-75
Identities = 28/156 (17%), Positives = 58/156 (37%)
Query: 1683 APLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQ 1742
+P + D E+G V + G D P + + +E + + + +
Sbjct: 1368 SPPRHSDNQSEEGEVKDDGLDK-SPVKKKQKKKENKENKEKQTSSKKEKESDKEKKKTKE 1426
Query: 1743 KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPK 1802
K EA+ GS KR +G + ++ S + G D D+ D++
Sbjct: 1427 KKEKPKGGEAKSGSKGKR-----SQGPVHITAGS--EPVPIGE---DEDDDLDQETFSIC 1476
Query: 1803 IKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLL 1838
+R R ++ + +++P++ L + LL
Sbjct: 1477 KERMRPVK-KALKQLDKPDKGLTVQEQLEHTRNCLL 1511
Score = 40 (19.1 bits), Expect = 5.7e-79, Sum P(4) = 5.7e-79
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 201 RGEKQMEQPQQQVSDQKGEPKPPSQQT 227
RG+K+ Q + D + + P +QT
Sbjct: 199 RGKKRKRQVSSEDDDDDEDGETPKRQT 225
Score = 37 (18.1 bits), Expect = 7.9e-78, Sum P(5) = 7.9e-78
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 805 SQKAMREKQLKSISQWRKKL 824
S K +KQ+K +W++++
Sbjct: 131 SPKRRGQKQVKRKKKWKREI 150
Score = 37 (18.1 bits), Expect = 9.2e-75, Sum P(6) = 9.2e-75
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
+ K K KK K+ + GE S +R+ PV
Sbjct: 1413 KEKESDKEKKKTKEKKEKPKGGEAKSGSKGKRSQGPV 1449
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 804 (288.1 bits), Expect = 9.1e-79, P = 9.1e-79
Identities = 214/676 (31%), Positives = 341/676 (50%)
Query: 831 IRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGD 890
+ + + V E IL +K D A + + + RE E++ + G
Sbjct: 34 LNEEENCEEKSVTVVEEEIL--LAKNGDSSLISEAMAQEEEQLLKLRED--EEKANNAGS 89
Query: 891 AAE------RYAVLSSFLTQTE---EYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGL 941
A ++ L LTQT+ E+L + IT R +
Sbjct: 90 AVAPNLNETQFTKLDELLTQTQLYSEFLLEKMEDITINGIESESQKAEPEKTGRGRKRKA 149
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTL 1001
+ + + A A ++ R++ DG ++N + V + +L G L
Sbjct: 150 ASQYNNTKAKRAVAAMISRSK-------EDGETINSDLTEEETVIKLQNELCPLLTGGQL 202
Query: 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY--GPHLIIVPN 1059
+ YQ+ G++W++SL+ N LNGILAD+MGLGKT+Q + +++L KGN GP+L+I P
Sbjct: 203 KSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHL---KGNGLDGPYLVIAPL 259
Query: 1060 AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL---KFNVLVTTYEFIMYDRS 1116
+ L NW +E+ ++ PS++ I Y G K+QR L + + KF +++T+YE M D
Sbjct: 260 STLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAK 319
Query: 1117 KLSK-VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 1175
++ + WKY++IDE R+K+ + L R+L + +LLLTGTPLQN+
Sbjct: 320 RILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFI 379
Query: 1176 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235
P++F + F WF F ++ ++ E +++ ++ +LH IL PF+LRR D
Sbjct: 380 LPDIFTSHDEFESWFD--FSEKNKNEATKEE--EEKRRAQVVSKLHGILRPFILRRMKCD 435
Query: 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 1295
VE SLP K I++ M+ Q + + TL + R Q ++ K LN
Sbjct: 436 VELSLPRKKEIIMYATMTDHQKKFQEHL-VNNTLEAHLGENAIRGQG---WKGK----LN 487
Query: 1296 NRCMELRKTCNHP-LL----NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLF 1350
N ++LRK CNHP LL + Y ++ +V CGK +L+R+L++L H+VL+F
Sbjct: 488 NLVIQLRKNCNHPDLLQGQIDGSYLYPPVEE-IVGQCGKFRLLERLLVRLFANNHKVLIF 546
Query: 1351 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1410
S TKLLDI++ Y + RIDG+ L++R I DF+ S C IFLLS RA G G
Sbjct: 547 SQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLG 606
Query: 1411 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRS 1470
+NL +ADT I+YD D NP+ + QA+ R HRIGQ + V V Y + I + + R+
Sbjct: 607 INLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV-YRLSTAQSIETRVLK---RA 662
Query: 1471 GGTVDLEDDLAGKDRY 1486
+ LE + G+ ++
Sbjct: 663 YSKLKLEHVVIGQGQF 678
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 456 (165.6 bits), Expect = 1.1e-78, Sum P(4) = 1.1e-78
Identities = 104/280 (37%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP+ L L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 485 KQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 544
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP LI+VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 545 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 604
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 605 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQN 664
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 665 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 705
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 706 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 745
Score = 442 (160.7 bits), Expect = 1.1e-78, Sum P(4) = 1.1e-78
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 702 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 752
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 1333
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 753 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILL 809
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 810 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 869
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 870 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 929
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 930 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 986
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 1570
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 987 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1044
Query: 1571 EFGWIEEMTR--YDQV-PKWLRASTKE 1594
E +EE +D++ P+ R +E
Sbjct: 1045 EEE-LEERPHKDWDEIIPEEQRKKVEE 1070
Score = 59 (25.8 bits), Expect = 1.1e-78, Sum P(4) = 1.1e-78
Identities = 33/162 (20%), Positives = 63/162 (38%)
Query: 1731 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 1790
+LT + PV K L+ R L K + LE+ + AV+G ++ R
Sbjct: 1304 KLTDKILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-KGAVTGGEEAKLKKR----KPR 1358
Query: 1791 DEGEDEQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 1849
+ E+++ P++K + + PRH+ EE D L + + +NK +
Sbjct: 1359 VKKENKE---PRLKDEHGVEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKE 1415
Query: 1850 LRTDTEMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 1889
+ + G+ + D+ E P ++ K + P
Sbjct: 1416 KQMSSRKDKEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGP 1457
Score = 49 (22.3 bits), Expect = 1.1e-78, Sum P(4) = 1.1e-78
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 566 KEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ 625
KEEA +G + SP +G + K+ P ++EQ+ S+ ++ + R
Sbjct: 138 KEEASSGSESG--SPKRRGQRQLKKQEKWKREPSEDEQEQGTSAESEAEQKKVKARRPVP 195
Query: 626 QSDFPADRGK 635
+ P R K
Sbjct: 196 RRTVPKPRVK 205
Score = 44 (20.5 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 1786
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 981 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1039
Query: 1787 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 1846
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1040 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1091
Query: 1847 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 1903
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1092 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1141
Query: 1904 PGHTEDAADHFKESW 1918
G T+ F +++
Sbjct: 1142 EGFTDAEIRRFIKAY 1156
Score = 42 (19.8 bits), Expect = 6.3e-77, Sum P(4) = 6.3e-77
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 1618 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 1650
V GE +KR P+ KK + DE G E+S
Sbjct: 1344 VTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFS 1377
Score = 37 (18.1 bits), Expect = 2.1e-76, Sum P(4) = 2.1e-76
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1628 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1424 KEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPV 1458
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 472 (171.2 bits), Expect = 1.3e-78, Sum P(4) = 1.3e-78
Identities = 137/383 (35%), Positives = 205/383 (53%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 698 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 756
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 757 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 805
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 806 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 865
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 866 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 925
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 1506
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 926 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 985
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 1560
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 986 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEAGPLTVGDELLSQFKVANFSNMDED 1042
Query: 1561 EVELFDQMDEEFGWIEEMTRYDQ 1583
++EL + + + W EE+ DQ
Sbjct: 1043 DIELEPERNSK-NW-EEIIPEDQ 1063
Score = 446 (162.1 bits), Expect = 1.3e-78, Sum P(4) = 1.3e-78
Identities = 134/477 (28%), Positives = 226/477 (47%)
Query: 806 QKAMREKQLKSISQWRK-KLLEAHWAIRDARTARN-RGVAKYHERILREFSKRKDDDRNK 863
+K +++ + +W+ + W + +N RG+ K L + K+KD + +
Sbjct: 307 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKK-----LDNY-KKKDQETKR 360
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXXX 923
++ DVE Y Q + D ++Y ++ + + + +Y +
Sbjct: 361 WLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIDKIQCKIY-----LVYLTAHS 410
Query: 924 XXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEE-VMIRNRF---LEMNAPRDGSSVNKYY 979
+ QGL E C+ E+ +I +F ++ R+ S +
Sbjct: 411 NQKSAAGYPDYYCKWQGLPYSE------CSWEDGALISKKFQACIDEYFSRNQSKTTPFK 464
Query: 980 SLAHAVNER-----VMRQPSML--RAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLG 1031
+ +R + +QPS + G LRDYQ+ GL W+ + + ILADEMGLG
Sbjct: 465 D-CKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLG 523
Query: 1032 KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL 1091
KT+Q ++ + YL YGP L++VP + L +W+ E+ W ++ + Y+G + R+ +
Sbjct: 524 KTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMI 583
Query: 1092 FSQE-----VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146
+ E LKFN+L+TTYE ++ D++ L ++W +I +DEA R+K+ +S+L + L
Sbjct: 584 RTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLI 643
Query: 1147 RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDD 1206
++ RLL+TGTPLQN PE F + W + F++E H +
Sbjct: 644 DFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGRE 692
Query: 1207 WLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
+ LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 693 YGYAS--------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 741
Score = 48 (22.0 bits), Expect = 2.8e-35, Sum P(3) = 2.8e-35
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 984 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEAGPLTVGDELLSQFKVAN-FSNMDED 1042
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P + RR
Sbjct: 1043 DIELEP--ERNSKNWEEIIPEDQRRR 1066
Score = 44 (20.5 bits), Expect = 1.3e-78, Sum P(4) = 1.3e-78
Identities = 23/101 (22%), Positives = 39/101 (38%)
Query: 560 NVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECG 619
+V++ E + + DD + S G G S+ + G Q S SD E G
Sbjct: 9 SVRNSSGESSQSDDDSGSASGSGSGSSSGSSSD------GSSSQSG---SSDSDSGSESG 59
Query: 620 LLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQ 660
+Q +S+ R V + D + K + + A+Q
Sbjct: 60 ---SQSESESDNSRDNKVQAKPPKVDGAEFWKSSPSILAVQ 97
Score = 42 (19.8 bits), Expect = 1.3e-78, Sum P(4) = 1.3e-78
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1777 HMDHQQSGSWTHDR 1790
H DH+ S +TH +
Sbjct: 1740 HSDHRSSSEYTHHK 1753
Score = 38 (18.4 bits), Expect = 3.5e-78, Sum P(4) = 3.5e-78
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 1790 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 1831
R+ E + + K ++ + + ER ++ S D P+H
Sbjct: 1451 RENKVKEAIQKEKDIKEEKLSESKSESKERSKKSSVLDAPVH 1492
Score = 38 (18.4 bits), Expect = 8.3e-37, Sum P(3) = 8.3e-37
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DNSRDNKVQAKPPKVDGAEFWKSSPSILA 95
Score = 38 (18.4 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 1412 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 1452
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1038 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1081
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 457 (165.9 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 108/234 (46%), Positives = 144/234 (61%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 684 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 742
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 743 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 791
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R A+ FN+
Sbjct: 792 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIG-ELRRQALDHFNAX 850
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V
Sbjct: 851 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQV 904
Score = 444 (161.4 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 104/281 (37%), Positives = 157/281 (55%)
Query: 991 RQPSML--RAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + G LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 466 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 525
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W ++ + Y+G + R+ + + E LKFN
Sbjct: 526 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 585
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE ++ D++ L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 586 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 645
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N PE F + W + F++E H ++ LH+
Sbjct: 646 NSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGREYGYAS--------LHK 686
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 687 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 727
Score = 41 (19.5 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 18/104 (17%), Positives = 43/104 (41%)
Query: 806 QKAMREKQLKSISQWRK-KLLEAHWAIRDARTARN-RGVAKYHERILREFSKRKDDDRNK 863
+K+ ++ + +W+ + W + +N RG+ K L + K+KD + +
Sbjct: 306 EKSKEPGDVQYLIKWKGWSHIHNTWETEETLKQQNVRGMKK-----LDNY-KKKDQETKR 359
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
++ DVE Y Q + D ++Y ++ + + +
Sbjct: 360 WLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 398
Score = 39 (18.8 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 204 KQMEQPQQQ--VSDQKGEPKPPS 224
KQ +QPQQQ S G + S
Sbjct: 104 KQTQQPQQQRPASSNSGSEEDSS 126
Score = 39 (18.8 bits), Expect = 2.2e-78, Sum P(4) = 2.2e-78
Identities = 15/78 (19%), Positives = 35/78 (44%)
Query: 834 ARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLL----EQQTSIPG 889
+R +NR +K ++IL + ++ D ++ E N+ R+ + ++ +
Sbjct: 189 SRKPQNRSKSKSGKKILGQKKRQIDSSEDEDDEDYDNDKRSSRRQATVNVSYKEDEEMKT 248
Query: 890 DAAERYAVLSSFLTQTEE 907
D+ + V + QTE+
Sbjct: 249 DSDDLLEVCGEDVPQTED 266
Score = 39 (18.8 bits), Expect = 9.5e-38, Sum P(2) = 9.5e-38
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DTSRENKVQAKPPKVDGAEFWKSNPSILA 95
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 456 (165.6 bits), Expect = 2.3e-78, Sum P(3) = 2.3e-78
Identities = 104/280 (37%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP+ L L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 454 KQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 513
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP LI+VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 514 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 573
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 574 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 633
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 634 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 674
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 675 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 714
Score = 443 (161.0 bits), Expect = 2.3e-78, Sum P(3) = 2.3e-78
Identities = 143/459 (31%), Positives = 229/459 (49%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 671 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 721
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNH-PLLNYPYFSDLSKD-----FLVKSCGKLWIL 1333
+ K + N MEL+K CNH L+ P ++ L++S GKL +L
Sbjct: 722 LAKGTRGSTSGFL---NIVMELKKCCNHCHLIKPPEENERENGQEVLLSLIRSSGKLILL 778
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 779 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 838
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 839 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 898
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 899 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 955
Query: 1512 AGRFD-----QRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRM----IARSEDEV 1562
G D + E + M ++ +L E + V + + +++ A EDE
Sbjct: 956 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEE 1015
Query: 1563 ELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGE 1622
EL ++ ++ W +E+ +Q K ++ I L + S +N DS +
Sbjct: 1016 ELDERPHKD--W-DEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTN---DS-D 1068
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYP 1661
+TE KR + + + E DD + +R G P
Sbjct: 1069 SDTESKRQAQ-RSSASESETDDS----DDDKKPKRRGRP 1102
Score = 51 (23.0 bits), Expect = 2.3e-78, Sum P(3) = 2.3e-78
Identities = 24/98 (24%), Positives = 41/98 (41%)
Query: 1826 TDTPLHRGDSSLLPFQMDNKYPA-QLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRK 1884
TD L D +LP + D K QL+T + SL + + + + L RK
Sbjct: 1268 TDPELKLTDKKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKEGAVTGGEEAK-LTKRK 1326
Query: 1885 IANAPKSRASLKT--GRLNCMPGHTEDAADHFKESWDG 1920
+++A LK G P H+++ ++ + DG
Sbjct: 1327 PRVKKENKAPLKDEHGIEFSSPRHSDNPSEEGEVKDDG 1364
Score = 50 (22.7 bits), Expect = 2.9e-78, Sum P(3) = 2.9e-78
Identities = 33/157 (21%), Positives = 57/157 (36%)
Query: 1736 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 1795
+ PV K L+ R L K + LE+ E AV+G + T + +
Sbjct: 1279 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-EGAVTGG------EEAKLTKRKPRVKK 1331
Query: 1796 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 1854
E + +K + I PRH+ EE D L + + + +NK + + +
Sbjct: 1332 EN--KAPLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKENKENKEKQMSS 1389
Query: 1855 EMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 1889
G+ R D+ E P ++ K + P
Sbjct: 1390 RKDKEGDKERKRSKDKKEKPKGGDAKSSSKSKRSQGP 1426
Score = 41 (19.5 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 41/195 (21%), Positives = 75/195 (38%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 1786
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 950 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1008
Query: 1787 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 1846
DE E ++ +P I R VE EER ++ +LP +
Sbjct: 1009 ATMEDEEELDE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1060
Query: 1847 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 1903
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1061 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1110
Query: 1904 PGHTEDAADHFKESW 1918
G T+ F +++
Sbjct: 1111 EGFTDAEIRRFIKAY 1125
Score = 37 (18.1 bits), Expect = 6.7e-77, Sum P(3) = 6.7e-77
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1628 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1393 KEGDKERKRSKDKKEKPKGGDAKSSSKSKRSQGPV 1427
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 471 (170.9 bits), Expect = 3.2e-78, Sum P(4) = 3.2e-78
Identities = 137/383 (35%), Positives = 205/383 (53%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 668 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 726
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 727 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 775
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 776 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 835
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 836 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 895
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 1506
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 896 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 955
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 1560
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 956 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1012
Query: 1561 EVELFDQMDEEFGWIEEMTRYDQ 1583
++EL + + + W EE+ DQ
Sbjct: 1013 DIELEPERNSK-NW-EEIIPEDQ 1033
Score = 443 (161.0 bits), Expect = 3.2e-78, Sum P(4) = 3.2e-78
Identities = 103/281 (36%), Positives = 157/281 (55%)
Query: 991 RQPSML---RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + + LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 450 KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 509
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W ++ + Y+G + R+ + + E LKFN
Sbjct: 510 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 569
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE ++ D++ L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 570 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 629
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N PE F + W + F++E H ++ LH+
Sbjct: 630 NSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGREYGYAS--------LHK 670
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 671 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 711
Score = 49 (22.3 bits), Expect = 8.9e-35, Sum P(3) = 8.9e-35
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 954 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1012
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P + RR
Sbjct: 1013 DIELEP--ERNSKNWEEIIPEDQRRR 1036
Score = 45 (20.9 bits), Expect = 3.2e-78, Sum P(4) = 3.2e-78
Identities = 30/134 (22%), Positives = 54/134 (40%)
Query: 1770 IAVSGDSHMDHQQSGSWTHDRDEGEDE--QVLQP--KIKRKRSIRVRPRHTV----ERPE 1821
I V + D S D D+ +DE V P KIK +R RP V E E
Sbjct: 1329 IKVKEEMKSDSSPLPSEKSDEDDDKDEITSVKHPNKKIKTERDSEERPEPDVFIKKESEE 1388
Query: 1822 ERSCTDTPLHRGDSSLLPFQMDNKYPAQL----RTDTEMK-AHGESNSLRHDQ-SEPSSK 1875
+R + R + + D K + + + ++K A + ++ ++ +E S+
Sbjct: 1389 KREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKSE 1448
Query: 1876 SRRNLPSRKIANAP 1889
S+ +++AP
Sbjct: 1449 SKERSKKSSVSDAP 1462
Score = 41 (19.5 bits), Expect = 3.2e-78, Sum P(4) = 3.2e-78
Identities = 18/104 (17%), Positives = 43/104 (41%)
Query: 806 QKAMREKQLKSISQWRK-KLLEAHWAIRDARTARN-RGVAKYHERILREFSKRKDDDRNK 863
+K +++ + +W+ + W + +N RG+ K L + K+KD + +
Sbjct: 290 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKK-----LDNY-KKKDQETKR 343
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
++ DVE Y Q + D ++Y ++ + + +
Sbjct: 344 WLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 382
Score = 41 (19.5 bits), Expect = 8.4e-78, Sum P(4) = 8.4e-78
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1777 HMDHQQSGSWTHDR 1790
H DH+ S +TH +
Sbjct: 1712 HSDHRASSEYTHHK 1725
Score = 41 (19.5 bits), Expect = 8.4e-78, Sum P(4) = 8.4e-78
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 1790 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 1831
R+ E + + K ++ + + ER ++ S +D P+H
Sbjct: 1423 RENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSVSDAPVH 1464
Score = 40 (19.1 bits), Expect = 4.1e-78, Sum P(4) = 4.1e-78
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 834 ARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNND 872
+R +NR AK ++IL + ++ D + E +ND
Sbjct: 172 SRKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEEDYDND 210
Score = 38 (18.4 bits), Expect = 4.8e-37, Sum P(3) = 4.8e-37
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142
D S+ +KV K +D A+ K S+LA
Sbjct: 50 DTSRENKVQAKPPKVDGAEFWKSSPSILA 78
Score = 38 (18.4 bits), Expect = 3.6e-33, Sum P(4) = 3.6e-33
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 1412 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 1452
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1008 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1051
Score = 38 (18.4 bits), Expect = 9.3e-33, Sum P(4) = 9.3e-33
Identities = 31/175 (17%), Positives = 68/175 (38%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEA-----VVDKISSHQKEDELRSGGTVDLE 1477
+PD K E + A KRE+K E + +K ++E++++ + E
Sbjct: 1377 EPDVFIKKESEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEA--IQKE 1434
Query: 1478 DDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEER 1537
D+ K+ + + + ++ + A I A + E + +T +ER
Sbjct: 1435 KDI--KEEKLNESKSESKERSKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKER 1492
Query: 1538 YQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFG-----WIEEMTRYDQVPKW 1587
+ + L + ++ E ++E Q + G ++E T +Q+ +W
Sbjct: 1493 MRPVKAALKQLDRPEKGLSERE-QLEHTRQCLIKIGDHITECLKEYTNPEQIKQW 1546
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 456 (165.6 bits), Expect = 3.4e-78, Sum P(4) = 3.4e-78
Identities = 104/280 (37%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP+ L L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 474 KQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 533
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP LI+VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 534 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 593
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 594 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 653
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 654 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 694
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 695 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 734
Score = 442 (160.7 bits), Expect = 3.4e-78, Sum P(4) = 3.4e-78
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 741
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 1333
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 742 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILL 798
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 799 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 858
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 859 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 918
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 919 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 975
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 1570
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 976 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1033
Query: 1571 EFGWIEEMTR--YDQV-PKWLRASTKE 1594
E +EE +D++ P+ R +E
Sbjct: 1034 EEE-LEERPHKDWDEIIPEEQRKKVEE 1059
Score = 53 (23.7 bits), Expect = 3.4e-78, Sum P(4) = 3.4e-78
Identities = 33/157 (21%), Positives = 59/157 (37%)
Query: 1736 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 1795
+ PV K L+ R L K + LE+ E AV+G ++ R + E+
Sbjct: 1299 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-EGAVTGGEEAKLKKR----KPRVKKEN 1353
Query: 1796 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 1854
+ P++K + I PRH+ EE D L + + +NK + + +
Sbjct: 1354 KA---PRLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSS 1410
Query: 1855 EMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 1889
G+ + D+ E P ++ K + P
Sbjct: 1411 RKDKEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGP 1447
Score = 50 (22.7 bits), Expect = 3.4e-78, Sum P(4) = 3.4e-78
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 566 KEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ 625
KEEA +G + SP +G + K+ P ++EQ+ S+ ++ + R
Sbjct: 124 KEEASSGSESG--SPKRRGQRQLKKQEKWKREPSEDEQEQGTSAESEPEQKKVKARRPVP 181
Query: 626 QSDFPADRGK 635
+ P R K
Sbjct: 182 RRTVPKPRVK 191
Score = 44 (20.5 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 1786
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 970 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1028
Query: 1787 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 1846
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1029 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1080
Query: 1847 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 1903
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1081 KAQTNDSDSDTESKRQAQRSSASESETDESDDDKK----------PKRRGRPRSVRKDLV 1130
Query: 1904 PGHTEDAADHFKESW 1918
G T+ F +++
Sbjct: 1131 EGFTDAEIRRFIKAY 1145
Score = 43 (20.2 bits), Expect = 3.8e-77, Sum P(4) = 3.8e-77
Identities = 24/100 (24%), Positives = 42/100 (42%)
Query: 1826 TDTPLHRGDSSLLPFQMDNKYPA-QLRTDTEMKAHGESNSLRHDQSEPS---SKSRRNLP 1881
TD L D +LP + D K QL+T + SL + + +K ++ P
Sbjct: 1288 TDPELKLTDKKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKEGAVTGGEEAKLKKRKP 1347
Query: 1882 SRKIAN-APKSRASLKTGRLNCMPGHTEDAADHFKESWDG 1920
K N AP+ + + G P H+++ ++ + DG
Sbjct: 1348 RVKKENKAPRLKD--EHGIEFSSPRHSDNPSEEGEVKDDG 1385
Score = 42 (19.8 bits), Expect = 4.8e-77, Sum P(4) = 4.8e-77
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 1618 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 1650
V GE +KR P+ KK + DE G E+S
Sbjct: 1334 VTGGEEAKLKKRKPRVKKENKAPRLKDEHGIEFS 1367
Score = 37 (18.1 bits), Expect = 1.6e-76, Sum P(4) = 1.6e-76
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1628 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1414 KEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPV 1448
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 456 (165.6 bits), Expect = 3.7e-78, Sum P(4) = 3.7e-78
Identities = 104/280 (37%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP+ L L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 472 KQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 531
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP LI+VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 532 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 592 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQN 651
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 652 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 692
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 693 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 732
Score = 442 (160.7 bits), Expect = 3.7e-78, Sum P(4) = 3.7e-78
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 689 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 739
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 1333
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 740 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILL 796
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 797 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 856
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 857 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 916
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 917 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 973
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 1570
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 974 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1031
Query: 1571 EFGWIEEMTR--YDQV-PKWLRASTKE 1594
E +EE +D++ P+ R +E
Sbjct: 1032 EEE-LEERPHKDWDEIIPEEQRKKVEE 1057
Score = 49 (22.3 bits), Expect = 3.7e-78, Sum P(4) = 3.7e-78
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 566 KEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ 625
KEEA +G + SP +G + K+ P ++EQ+ S+ ++ + R
Sbjct: 125 KEEASSGSESG--SPKRRGQRQLKKQEKWKREPSEDEQEQGTSAESEAEQKKVKARRPVP 182
Query: 626 QSDFPADRGK 635
+ P R K
Sbjct: 183 RRTVPKPRVK 192
Score = 46 (21.3 bits), Expect = 3.7e-78, Sum P(4) = 3.7e-78
Identities = 23/93 (24%), Positives = 42/93 (45%)
Query: 1731 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 1790
+LT + PV K L+ R L K + LE+ + AV+G ++ R
Sbjct: 1291 KLTDKILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-KGAVTGGEEAKLKKR----KPR 1345
Query: 1791 DEGEDEQVLQPKIKRKRSIRVR-PRHTVERPEE 1822
+ E+++ P++K + + PRH+ + P E
Sbjct: 1346 VKKENKE---PRLKDEHGVEFSSPRHS-DNPSE 1374
Score = 44 (20.5 bits), Expect = 5.0e-37, Sum P(3) = 5.0e-37
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 1786
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 968 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1026
Query: 1787 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 1846
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1027 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1078
Query: 1847 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 1903
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1079 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1128
Query: 1904 PGHTEDAADHFKESW 1918
G T+ F +++
Sbjct: 1129 EGFTDAEIRRFIKAY 1143
Score = 42 (19.8 bits), Expect = 9.7e-78, Sum P(4) = 9.7e-78
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 1618 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 1650
V GE +KR P+ KK + DE G E+S
Sbjct: 1331 VTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFS 1364
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 456 (165.6 bits), Expect = 4.3e-78, Sum P(4) = 4.3e-78
Identities = 104/280 (37%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP+ L L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 441 KQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 500
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP LI+VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 501 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 560
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 561 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQN 620
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 621 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 661
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 662 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 701
Score = 442 (160.7 bits), Expect = 4.3e-78, Sum P(4) = 4.3e-78
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 658 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 708
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 1333
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 709 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILL 765
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 766 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 825
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 826 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 885
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 886 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 942
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 1570
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 943 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1000
Query: 1571 EFGWIEEMTR--YDQV-PKWLRASTKE 1594
E +EE +D++ P+ R +E
Sbjct: 1001 EEE-LEERPHKDWDEIIPEEQRKKVEE 1026
Score = 51 (23.0 bits), Expect = 4.3e-78, Sum P(4) = 4.3e-78
Identities = 34/177 (19%), Positives = 68/177 (38%)
Query: 1736 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 1795
+ PV K L+ R L K + LE+ + AV+G ++ R + E+
Sbjct: 1266 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-KGAVTGGEEAKLKKR----KPRVKKEN 1320
Query: 1796 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 1854
++ P++K + + PRH+ EE D L + + +NK + + +
Sbjct: 1321 KE---PRLKDEHGVEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSS 1377
Query: 1855 EMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK-TGRLNCMP-GHTED 1909
G+ R + K + ++ + + +S+ + T +P G ED
Sbjct: 1378 RKDKEGDKE--RKKSKDKKEKKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDED 1432
Score = 49 (22.3 bits), Expect = 4.3e-78, Sum P(4) = 4.3e-78
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 566 KEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ 625
KEEA +G + SP +G + K+ P ++EQ+ S+ ++ + R
Sbjct: 109 KEEASSGSESG--SPKRRGQRQLKKQEKWKREPSEDEQEQGTSAESEAEQKKVKARRPVP 166
Query: 626 QSDFPADRGK 635
+ P R K
Sbjct: 167 RRTVPKPRVK 176
Score = 44 (20.5 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 1786
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 937 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 995
Query: 1787 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 1846
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 996 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1047
Query: 1847 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 1903
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1048 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1097
Query: 1904 PGHTEDAADHFKESW 1918
G T+ F +++
Sbjct: 1098 EGFTDAEIRRFIKAY 1112
Score = 42 (19.8 bits), Expect = 3.7e-77, Sum P(4) = 3.7e-77
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 1618 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 1650
V GE +KR P+ KK + DE G E+S
Sbjct: 1301 VTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFS 1334
Score = 40 (19.1 bits), Expect = 6.0e-77, Sum P(4) = 6.0e-77
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 1826 TDTPLHRGDSSLLPFQMDNKYPA-QLRT 1852
TD L D +LP + D K QL+T
Sbjct: 1255 TDPELKLTDKKILPVETDKKPQGKQLQT 1282
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 456 (165.6 bits), Expect = 7.0e-78, Sum P(4) = 7.0e-78
Identities = 104/280 (37%), Positives = 154/280 (55%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP+ L L RDYQ+ GL W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 475 KQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 534
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNV 1103
YGP LI+VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 535 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 594
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 595 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQN 654
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F+ F + F+++ H E LH++
Sbjct: 655 SLKELWSLLHFIMPEKFE--------FWEDFEED---HGKG-----RENGY---QSLHKV 695
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 696 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWI 735
Score = 442 (160.7 bits), Expect = 7.0e-78, Sum P(4) = 7.0e-78
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 692 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 742
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 1333
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 743 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILL 799
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 800 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 859
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 860 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 919
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 920 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 976
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 1570
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 977 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1034
Query: 1571 EFGWIEEMTR--YDQV-PKWLRASTKE 1594
E +EE +D++ P+ R +E
Sbjct: 1035 EEE-LEERPHKDWDEIIPEEQRKKVEE 1060
Score = 51 (23.0 bits), Expect = 7.0e-78, Sum P(4) = 7.0e-78
Identities = 31/157 (19%), Positives = 60/157 (38%)
Query: 1736 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 1795
+ PV K L+ R L K + LE+ + AV+G ++ R + E+
Sbjct: 1300 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-KGAVTGGEEAKLKKR----KPRVKKEN 1354
Query: 1796 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 1854
++ P++K + + PRH+ EE D L + + +NK + + +
Sbjct: 1355 KE---PRLKDEHGVEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSS 1411
Query: 1855 EMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 1889
G+ + D+ E P ++ K + P
Sbjct: 1412 RKDKEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGP 1448
Score = 49 (22.3 bits), Expect = 7.0e-78, Sum P(4) = 7.0e-78
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 566 KEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ 625
KEEA +G + SP +G + K+ P ++EQ+ S+ ++ + R
Sbjct: 125 KEEASSGSESG--SPKRRGQRQLKKQEKWKREPSEDEQEQGTSAESEAEQKKVKARRPVP 182
Query: 626 QSDFPADRGK 635
+ P R K
Sbjct: 183 RRTVPKPRVK 192
Score = 44 (20.5 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 1786
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 971 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1029
Query: 1787 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 1846
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1030 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1081
Query: 1847 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 1903
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1082 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1131
Query: 1904 PGHTEDAADHFKESW 1918
G T+ F +++
Sbjct: 1132 EGFTDAEIRRFIKAY 1146
Score = 42 (19.8 bits), Expect = 6.1e-77, Sum P(4) = 6.1e-77
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 1618 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 1650
V GE +KR P+ KK + DE G E+S
Sbjct: 1335 VTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFS 1368
Score = 40 (19.1 bits), Expect = 9.8e-77, Sum P(4) = 9.8e-77
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 1826 TDTPLHRGDSSLLPFQMDNKYPA-QLRT 1852
TD L D +LP + D K QL+T
Sbjct: 1289 TDPELKLTDKKILPVETDKKPQGKQLQT 1316
Score = 37 (18.1 bits), Expect = 2.0e-76, Sum P(4) = 2.0e-76
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1628 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1415 KEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPV 1449
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 467 (169.5 bits), Expect = 8.1e-78, Sum P(5) = 8.1e-78
Identities = 108/236 (45%), Positives = 146/236 (61%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 684 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 742
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 743 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 791
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 792 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 851
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 852 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 907
Score = 444 (161.4 bits), Expect = 8.1e-78, Sum P(5) = 8.1e-78
Identities = 104/281 (37%), Positives = 157/281 (55%)
Query: 991 RQPSML--RAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + G LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 466 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 525
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W ++ + Y+G + R+ + + E LKFN
Sbjct: 526 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 585
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE ++ D++ L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 586 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 645
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N PE F + W + F++E H ++ LH+
Sbjct: 646 NSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGREYGYAS--------LHK 686
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 687 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 727
Score = 50 (22.7 bits), Expect = 8.1e-78, Sum P(5) = 8.1e-78
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 970 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLSVGDELLSQFKVAN-FSNMDED 1028
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P + RR
Sbjct: 1029 DIELEP--ERNSKNWEEIIPEEQRRR 1052
Score = 44 (20.5 bits), Expect = 8.1e-78, Sum P(5) = 8.1e-78
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 567 EEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ- 625
E + +GDD + S G G S+ + G + + S S E E R +
Sbjct: 16 ESSQSGDDCGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDS-GSQSESESDTSRENKV 74
Query: 626 QSDFP----ADRGKSVAPQVSACD--AVQVKKPAQA 655
Q+ P A+ KS +P + A A+ K+P QA
Sbjct: 75 QAKPPKVDGAEFWKS-SPSILAVQRSAMLRKQPQQA 109
Score = 41 (19.5 bits), Expect = 6.9e-77, Sum P(5) = 6.9e-77
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 1751 EARPGSLSKRMPDELEEGEIAVSGDS-HMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSI 1809
E RP SL + D + S H DH+ S TH + D + L R+
Sbjct: 1615 EHRP-SLEGGLKDRCHSDHRSHSDHRMHSDHRSSSEHTHHKSS-RDYRYLSDWQLDHRAA 1672
Query: 1810 RVRPRHTVER 1819
PR +++
Sbjct: 1673 SSGPRSPLDQ 1682
Score = 39 (18.8 bits), Expect = 8.1e-78, Sum P(5) = 8.1e-78
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 855 KRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
K+KD + + ++ DVE Y Q + D ++Y ++ + + +
Sbjct: 351 KKKDQETKRWLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 398
Score = 39 (18.8 bits), Expect = 2.7e-77, Sum P(5) = 2.7e-77
Identities = 18/78 (23%), Positives = 29/78 (37%)
Query: 547 ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVV--------- 597
+S D+ + S S QS + + + A P G P+ + V
Sbjct: 46 QSGSSDSDSGSDSGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLRKQ 105
Query: 598 PGKEEQQAPVSSVKSDQE 615
P + +QQ P SS +E
Sbjct: 106 PQQAQQQRPASSNSGSEE 123
Score = 38 (18.4 bits), Expect = 3.2e-37, Sum P(3) = 3.2e-37
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DTSRENKVQAKPPKVDGAEFWKSSPSILA 95
Score = 38 (18.4 bits), Expect = 1.5e-32, Sum P(5) = 1.5e-32
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 1412 NLQSADTVIIYDPDPNPKNEEQAVARAHRIG-----QKREVKVIYM 1452
N+ D I +P+ N KN E+ + R +++E++ IYM
Sbjct: 1024 NMDEDD--IELEPERNSKNWEEIIPEEQRRRLEEEERQKELEEIYM 1067
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 471 (170.9 bits), Expect = 1.6e-77, Sum P(5) = 1.6e-77
Identities = 137/383 (35%), Positives = 205/383 (53%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 685 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 743
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 744 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 792
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 793 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 852
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 853 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 912
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 1506
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 913 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 972
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 1560
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 973 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1029
Query: 1561 EVELFDQMDEEFGWIEEMTRYDQ 1583
++EL + + + W EE+ DQ
Sbjct: 1030 DIELEPERNSK-NW-EEIIPEDQ 1050
Score = 443 (161.0 bits), Expect = 1.6e-77, Sum P(5) = 1.6e-77
Identities = 103/281 (36%), Positives = 157/281 (55%)
Query: 991 RQPSML---RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + + LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 467 KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 526
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W ++ + Y+G + R+ + + E LKFN
Sbjct: 527 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 586
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE ++ D++ L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 587 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 646
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N PE F + W + F++E H ++ LH+
Sbjct: 647 NSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGREYGYAS--------LHK 687
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 688 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 728
Score = 49 (22.3 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 971 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1029
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P + RR
Sbjct: 1030 DIELEP--ERNSKNWEEIIPEDQRRR 1053
Score = 45 (20.9 bits), Expect = 1.6e-77, Sum P(5) = 1.6e-77
Identities = 23/101 (22%), Positives = 39/101 (38%)
Query: 560 NVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECG 619
+V++ E + + DD + S G G S+ + G Q S SD E G
Sbjct: 9 SVRNSSGESSQSDDDSGSASGSGSGSSSGSSSD------GSSSQSG---SSDSDSGSESG 59
Query: 620 LLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQ 660
+Q +S+ R V + D + K + + A+Q
Sbjct: 60 ---SQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQ 97
Score = 41 (19.5 bits), Expect = 1.6e-77, Sum P(5) = 1.6e-77
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1777 HMDHQQSGSWTHDR 1790
H DH+ S +TH +
Sbjct: 1641 HSDHRASSEYTHHK 1654
Score = 41 (19.5 bits), Expect = 1.6e-77, Sum P(5) = 1.6e-77
Identities = 18/104 (17%), Positives = 43/104 (41%)
Query: 806 QKAMREKQLKSISQWRK-KLLEAHWAIRDARTARN-RGVAKYHERILREFSKRKDDDRNK 863
+K +++ + +W+ + W + +N RG+ K L + K+KD + +
Sbjct: 307 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKK-----LDNY-KKKDQETKR 360
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
++ DVE Y Q + D ++Y ++ + + +
Sbjct: 361 WLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 399
Score = 40 (19.1 bits), Expect = 2.0e-77, Sum P(5) = 2.0e-77
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 834 ARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNND 872
+R +NR AK ++IL + ++ D + E +ND
Sbjct: 189 SRKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEEDYDND 227
Score = 38 (18.4 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DTSRENKVQAKPPKVDGAEFWKSSPSILA 95
Score = 38 (18.4 bits), Expect = 9.5e-33, Sum P(5) = 9.5e-33
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 1412 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 1452
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1025 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1068
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 471 (170.9 bits), Expect = 2.8e-77, Sum P(6) = 2.8e-77
Identities = 137/383 (35%), Positives = 205/383 (53%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 686 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 744
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 745 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 793
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 794 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 853
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 854 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 913
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 1506
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 914 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 973
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 1560
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 974 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1030
Query: 1561 EVELFDQMDEEFGWIEEMTRYDQ 1583
++EL + + + W EE+ DQ
Sbjct: 1031 DIELEPERNSK-NW-EEIIPEDQ 1051
Score = 444 (161.4 bits), Expect = 2.8e-77, Sum P(6) = 2.8e-77
Identities = 104/281 (37%), Positives = 157/281 (55%)
Query: 991 RQPSML--RAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + G LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 468 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 527
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W ++ + Y+G + R+ + + E LKFN
Sbjct: 528 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFN 587
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE ++ D++ L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 588 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 647
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N PE F + W + F++E H ++ LH+
Sbjct: 648 NSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGREYGYAS--------LHK 688
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 689 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 729
Score = 49 (22.3 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 972 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1030
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P + RR
Sbjct: 1031 DIELEP--ERNSKNWEEIIPEDQRRR 1054
Score = 45 (20.9 bits), Expect = 2.8e-77, Sum P(6) = 2.8e-77
Identities = 23/101 (22%), Positives = 39/101 (38%)
Query: 560 NVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECG 619
+V++ E + + DD + S G G S+ + G Q S SD E G
Sbjct: 9 SVRNSSGESSQSDDDSGSASGSGSGSSSGSSSD------GSSSQSG---SSDSDSGSESG 59
Query: 620 LLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQ 660
+Q +S+ R V + D + K + + A+Q
Sbjct: 60 ---SQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQ 97
Score = 42 (19.8 bits), Expect = 2.8e-77, Sum P(6) = 2.8e-77
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1777 HMDHQQSGSWTHDR 1790
H DH+ S +TH +
Sbjct: 1640 HSDHRSSSEYTHHK 1653
Score = 42 (19.8 bits), Expect = 2.8e-77, Sum P(6) = 2.8e-77
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSG 1774
LT + P P K L+ R L K + +L + E A+SG
Sbjct: 1284 LTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKE-ALSG 1325
Score = 41 (19.5 bits), Expect = 2.8e-77, Sum P(6) = 2.8e-77
Identities = 18/104 (17%), Positives = 43/104 (41%)
Query: 806 QKAMREKQLKSISQWRK-KLLEAHWAIRDARTARN-RGVAKYHERILREFSKRKDDDRNK 863
+K +++ + +W+ + W + +N RG+ K L + K+KD + +
Sbjct: 308 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKK-----LDNY-KKKDQETKR 361
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
++ DVE Y Q + D ++Y ++ + + +
Sbjct: 362 WLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 400
Score = 38 (18.4 bits), Expect = 4.6e-36, Sum P(4) = 4.6e-36
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DTSRENKVQAKPPKVDGAEFWKSSPSILA 95
Score = 38 (18.4 bits), Expect = 9.5e-33, Sum P(6) = 9.5e-33
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 1412 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 1452
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1026 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1069
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 546 (197.3 bits), Expect = 6.6e-77, Sum P(3) = 6.6e-77
Identities = 124/352 (35%), Positives = 196/352 (55%)
Query: 968 APRDGSSVNKYYSLAHA---VNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
A + G+ + YSLA+ E + QP++ G L+ YQ+ G+ W+ +LY +NGIL
Sbjct: 484 ANKSGTGFGESYSLANPSIRAGEDIP-QPTIFN-GKLKGYQLKGMNWLANLYEQGINGIL 541
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKTVQ +AL+A+L E + +GP LII P + L NW E +++P + Y G
Sbjct: 542 ADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGN 601
Query: 1085 KDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138
R R +SQ+ + F+V++T+Y+ ++ D +V W+Y+++DEAQ +K
Sbjct: 602 PHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSS 661
Query: 1139 SVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEG 1198
SV + L +++C+ RLLLTGTP+QN P +FD+ + F++WFS+ +
Sbjct: 662 SVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA 721
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
+A D E + + RLH IL+PFMLRR +DVE L K+ I++ C++++ Q
Sbjct: 722 ENKSAID---ENQ-----LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKL 773
Query: 1259 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
+Y +K ++ ED + + +L N M+ RK CNHP L
Sbjct: 774 LYQALKN----KISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPEL 821
Score = 340 (124.7 bits), Expect = 6.6e-77, Sum P(3) = 6.6e-77
Identities = 94/265 (35%), Positives = 149/265 (56%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1093 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1152
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1153 ISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1211
Query: 1440 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKDRYIGSIE 1491
R+GQ ++V V I + ++I KE E++ SGG D L K+ + S+
Sbjct: 1212 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE--VVSL- 1267
Query: 1492 GLIRNNIQQYKIDMADEVINAGRFDQRTTH-EERRMTLETLLHDEERYQETVHDVPSLQE 1550
L+ + + K+ + E R + T +ER+ E + E++ +E D +E
Sbjct: 1268 -LLDDEELEKKLRLRQE---EKRQQEETNRVKERKRKREK--YAEKKKKEDELDGKRRKE 1321
Query: 1551 -VNRMI--ARSEDEVELFDQMDEEF 1572
VN +I S D L D+ F
Sbjct: 1322 GVNLVIPFVPSADNSNLSADGDDSF 1346
Score = 44 (20.5 bits), Expect = 6.6e-77, Sum P(3) = 6.6e-77
Identities = 28/127 (22%), Positives = 55/127 (43%)
Query: 793 RQRVELMRQVQTSQKAMREK-QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
R++V L + KA ++K +++ + L AH +++ R A + E + R
Sbjct: 277 RRKVWLSIVKKELPKANKQKASARNLFLTNSRKL-AHQCMKEVRRAALQAQKNCKETLPR 335
Query: 852 EFSKRKDDDRN-KRMEALKNNDVERYREMLLEQQT--SIPGDAAERYAVLSSFLTQTEEY 908
K+ K+ E ++ +R + LEQ+ +A + L+ +TQTE Y
Sbjct: 336 ARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELY 395
Query: 909 LYKLGSK 915
+ + K
Sbjct: 396 AHFMSRK 402
Score = 41 (19.5 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEI 1646
ERKR K +KY K+ +DE+
Sbjct: 1296 ERKR--KREKYAEKKKKEDEL 1314
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 545 (196.9 bits), Expect = 8.6e-77, Sum P(3) = 8.6e-77
Identities = 124/352 (35%), Positives = 196/352 (55%)
Query: 968 APRDGSSVNKYYSLAHA---VNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
A + G+ + YSLA+ E + QP++ G L+ YQ+ G+ W+ +LY +NGIL
Sbjct: 487 ANKSGTGFGESYSLANPSIRAGEDIP-QPTIFN-GKLKGYQLKGMNWLANLYEQGINGIL 544
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKTVQ +AL+A+L E + +GP LII P + L NW E +++P + Y G
Sbjct: 545 ADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGN 604
Query: 1085 KDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138
R R +SQ+ + F+V++T+Y+ ++ D +V W+Y+++DEAQ +K
Sbjct: 605 PHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSS 664
Query: 1139 SVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEG 1198
SV + L +++C+ RLLLTGTP+QN P +FD+ + F++WFS+ +
Sbjct: 665 SVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA 724
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
+A D E + + RLH IL+PFMLRR +DVE L K+ I++ C++++ Q
Sbjct: 725 ENKSAID---ENQ-----LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKL 776
Query: 1259 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
+Y +K ++ ED + + +L N M+ RK CNHP L
Sbjct: 777 LYQALKN----KISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPEL 824
Score = 340 (124.7 bits), Expect = 8.6e-77, Sum P(3) = 8.6e-77
Identities = 94/265 (35%), Positives = 149/265 (56%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1097 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1156
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1157 ISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1215
Query: 1440 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKDRYIGSIE 1491
R+GQ ++V V I + ++I KE E++ SGG D L K+ + S+
Sbjct: 1216 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE--VVSL- 1271
Query: 1492 GLIRNNIQQYKIDMADEVINAGRFDQRTTH-EERRMTLETLLHDEERYQETVHDVPSLQE 1550
L+ + + K+ + E R + T +ER+ E + E++ +E D +E
Sbjct: 1272 -LLDDEELEKKLRLRQE---EKRQQEETNRVKERKRKREK--YAEKKKKEDELDGKRRKE 1325
Query: 1551 -VNRMI--ARSEDEVELFDQMDEEF 1572
VN +I S D L D+ F
Sbjct: 1326 GVNLVIPFVPSADNSNLSADGDDSF 1350
Score = 44 (20.5 bits), Expect = 8.6e-77, Sum P(3) = 8.6e-77
Identities = 28/127 (22%), Positives = 55/127 (43%)
Query: 793 RQRVELMRQVQTSQKAMREK-QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
R++V L + KA ++K +++ + L AH +++ R A + E + R
Sbjct: 280 RRKVWLSIVKKELPKANKQKASARNLFLTNSRKL-AHQCMKEVRRAALQAQKNCKETLPR 338
Query: 852 EFSKRKDDDRN-KRMEALKNNDVERYREMLLEQQT--SIPGDAAERYAVLSSFLTQTEEY 908
K+ K+ E ++ +R + LEQ+ +A + L+ +TQTE Y
Sbjct: 339 ARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELY 398
Query: 909 LYKLGSK 915
+ + K
Sbjct: 399 AHFMSRK 405
Score = 41 (19.5 bits), Expect = 1.7e-45, Sum P(3) = 1.7e-45
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEI 1646
ERKR K +KY K+ +DE+
Sbjct: 1300 ERKR--KREKYAEKKKKEDEL 1318
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 535 (193.4 bits), Expect = 9.0e-77, Sum P(4) = 9.0e-77
Identities = 121/349 (34%), Positives = 193/349 (55%)
Query: 968 APRDGSSVNKYYSLAHAVNE--RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILA 1025
A GS + YSL++ + + QP++ G L+ YQ+ G+ W+ +LY +NGILA
Sbjct: 485 ASMSGSGFGESYSLSNPSIQAGEDIPQPTIFN-GKLKGYQLKGMNWLANLYEQGINGILA 543
Query: 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAK 1085
DEMGLGKTVQ +AL+A+L E + +GP LII P + L NW E +++P + Y G
Sbjct: 544 DEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFSRFVPKFKVLPYWGNP 603
Query: 1086 DQRS---RLFSQEVAALK---FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES 1139
R + +SQ+ + F+V++T+Y+ ++ D +V W+Y+++DEAQ +K S
Sbjct: 604 HDRKVIRKFWSQKTLYTQNAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTS 663
Query: 1140 VLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGP 1199
V + L +++C+ RLLLTGTP+QN P +FD+ + F++WFS+ +
Sbjct: 664 VRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAE 723
Query: 1200 THNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAI 1259
+A D E + + RLH IL+PFMLRR +DVE L K+ I+ C++++ Q +
Sbjct: 724 NKSAID---ENQ-----LSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQRLL 775
Query: 1260 YDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308
Y +K ++ ED + + +L N M+ RK CNHP
Sbjct: 776 YQALKN----KISIEDLLQSSMGSAQQAHSTTSSLMNLVMQFRKVCNHP 820
Score = 339 (124.4 bits), Expect = 9.0e-77, Sum P(4) = 9.0e-77
Identities = 74/173 (42%), Positives = 110/173 (63%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K+ L+ GKL LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1124 KESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1183
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+ +R + DF S +D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1184 ISERRDMVADFQSR-TDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1242
Query: 1440 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 1484
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1243 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1294
Score = 54 (24.1 bits), Expect = 9.0e-77, Sum P(4) = 9.0e-77
Identities = 30/127 (23%), Positives = 55/127 (43%)
Query: 793 RQRVELMRQVQTSQKAMREK-QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
R++V L + KA ++K ++ + L AH +R+ R A + E + R
Sbjct: 278 RRKVWLTIAKKEIPKAFKQKVSARNFVLTNARKL-AHQCMREVRRAAIQAQKNCKETLPR 336
Query: 852 EFSKRKDDDRN-KRMEALKNNDVERYREMLLEQQT--SIPGDAAERYAVLSSFLTQTEEY 908
K+ K+ E ++ +R + LEQ+ +A + L+ +TQTE Y
Sbjct: 337 ARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELY 396
Query: 909 LYKLGSK 915
+ +G K
Sbjct: 397 AHFMGGK 403
Score = 52 (23.4 bits), Expect = 9.0e-77, Sum P(4) = 9.0e-77
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 581 VGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKS---DQEVECGLLRTQQQSDFPADR 633
+G+G S + P V K++ +P K D E ECG L + AD+
Sbjct: 66 LGEGSSLASSNPLLAV---KKDHISPEDETKDSCRDGETECGTLNGAVLQEHKADK 118
Score = 43 (20.2 bits), Expect = 5.6e-46, Sum P(4) = 5.6e-46
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 1741 PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSH 1777
P G + AL+ R G R+PD+ E I SG H
Sbjct: 1101 PPNPGGVMALQQRHGWSFIRIPDK--ESLITDSGKLH 1135
Score = 38 (18.4 bits), Expect = 6.2e-75, Sum P(3) = 6.2e-75
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 540 EDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGD 573
E+ LR LE N Q V +E Y D
Sbjct: 413 EEILRKLEDNSSQRQIDIGGGVMVNVSQEDYDSD 446
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 553 (199.7 bits), Expect = 1.0e-76, Sum P(4) = 1.0e-76
Identities = 124/349 (35%), Positives = 196/349 (56%)
Query: 968 APRDGSSVNKYYSLAHA---VNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
A + GS + YSLA+ E + QP++ G L+ YQ+ G+ W+ +LY +NGIL
Sbjct: 486 ADKSGSGFGESYSLANPSIRAGEDIP-QPTIFN-GKLKGYQLKGMNWLANLYEQGINGIL 543
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKTVQ +AL+A+L E + +GP LII P + L NW E +++P + Y G
Sbjct: 544 ADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGN 603
Query: 1085 KDQRSR---LFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 1141
R + L++Q+ F+V++T+Y+ ++ D +V W+Y+++DEAQ +K SV
Sbjct: 604 PHDRKKKKTLYTQDAP---FHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVR 660
Query: 1142 ARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTH 1201
+ L +++C+ RLLLTGTP+QN P +FD+ + F++WFS+ +
Sbjct: 661 WKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK 720
Query: 1202 NADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
+A D E + + RLH IL+PFMLRR +DVE L K+ I++ C++++ Q +Y
Sbjct: 721 SAID---ENQ-----LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQ 772
Query: 1262 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
+K ++ ED + + +L N M+ RK CNHP L
Sbjct: 773 ALKN----KISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPEL 817
Score = 339 (124.4 bits), Expect = 1.0e-76, Sum P(4) = 1.0e-76
Identities = 73/173 (42%), Positives = 111/173 (64%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1090 KESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1149
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1150 ISERRDMVADFQTRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1208
Query: 1440 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 1484
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1209 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1260
Score = 44 (20.5 bits), Expect = 1.0e-76, Sum P(4) = 1.0e-76
Identities = 28/127 (22%), Positives = 55/127 (43%)
Query: 793 RQRVELMRQVQTSQKAMREKQ-LKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
R++V L + KA ++K +++ + L AH +++ R A + E + R
Sbjct: 279 RRKVWLSIVKKELPKANKQKSSARNLFLTNSRKL-AHQCMKEVRRAALQAQKNCKETLPR 337
Query: 852 EFSKRKDDDRN-KRMEALKNNDVERYREMLLEQQT--SIPGDAAERYAVLSSFLTQTEEY 908
K+ K+ E ++ +R + LEQ+ +A + L+ +TQTE Y
Sbjct: 338 ARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELY 397
Query: 909 LYKLGSK 915
+ + K
Sbjct: 398 AHFMSRK 404
Score = 42 (19.8 bits), Expect = 1.0e-76, Sum P(4) = 1.0e-76
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 1619 DSGEIETERKRGPKGKKYPNYKEVDDEI 1646
+S ++ ERKR K +KY K+ +DE+
Sbjct: 1287 ESNRVK-ERKR--KREKYAEKKKKEDEL 1311
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 547 (197.6 bits), Expect = 4.8e-76, Sum P(4) = 4.8e-76
Identities = 125/352 (35%), Positives = 195/352 (55%)
Query: 968 APRDGSSVNKYYSLAHA---VNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
A + GS + YSLA+ E + QP++ G L+ YQ+ G+ W+ +LY +NGIL
Sbjct: 486 ADKSGSGFGESYSLANPSIRAGEDIP-QPTIFN-GKLKGYQLKGMNWLANLYEQGINGIL 543
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKTVQ +AL+A+L E + +GP LII P + L NW E +++P + Y G
Sbjct: 544 ADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGN 603
Query: 1085 KDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138
R R +SQ+ + F+V++T+Y+ ++ D +V W+Y+++DEAQ +K
Sbjct: 604 PHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSS 663
Query: 1139 SVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEG 1198
SV + L +++C+ RLLLTGTP+QN P +FD+ + F++WFS+ +
Sbjct: 664 SVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA 723
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
+A D E + + RLH IL+PFMLRR +DVE L K+ I+ C++++ Q
Sbjct: 724 ENKSAID---ENQ-----LSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKL 775
Query: 1259 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
+Y +K ++ ED + + +L N M+ RK CNHP L
Sbjct: 776 LYQALKN----KISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPEL 823
Score = 339 (124.4 bits), Expect = 4.8e-76, Sum P(4) = 4.8e-76
Identities = 73/173 (42%), Positives = 111/173 (64%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1096 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1155
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1156 ISERRDMVADFQTRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1214
Query: 1440 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 1484
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1215 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1266
Score = 44 (20.5 bits), Expect = 4.8e-76, Sum P(4) = 4.8e-76
Identities = 28/127 (22%), Positives = 55/127 (43%)
Query: 793 RQRVELMRQVQTSQKAMREKQ-LKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
R++V L + KA ++K +++ + L AH +++ R A + E + R
Sbjct: 279 RRKVWLSIVKKELPKANKQKSSARNLFLTNSRKL-AHQCMKEVRRAALQAQKNCKETLPR 337
Query: 852 EFSKRKDDDRN-KRMEALKNNDVERYREMLLEQQT--SIPGDAAERYAVLSSFLTQTEEY 908
K+ K+ E ++ +R + LEQ+ +A + L+ +TQTE Y
Sbjct: 338 ARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELY 397
Query: 909 LYKLGSK 915
+ + K
Sbjct: 398 AHFMSRK 404
Score = 42 (19.8 bits), Expect = 4.8e-76, Sum P(4) = 4.8e-76
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 1619 DSGEIETERKRGPKGKKYPNYKEVDDEI 1646
+S ++ ERKR K +KY K+ +DE+
Sbjct: 1293 ESNRVK-ERKR--KREKYAEKKKKEDEL 1317
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 538 (194.4 bits), Expect = 9.6e-76, Sum P(3) = 9.6e-76
Identities = 161/542 (29%), Positives = 265/542 (48%)
Query: 784 YRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVA 843
YR V ++ L + Q + K R+ Q ++ + A +R+ + R
Sbjct: 583 YRTKVNSLSTRQENLRKTAQLASKQSRKWQERTNKSMKDTQARAKRTMREMMSFWKRN-- 640
Query: 844 KYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTS---------IPGDAAER 894
+ ER LR +++++ + KR EA + + ++ + L QT IPG E
Sbjct: 641 EREERDLRRLAEKQELESAKRAEAEREANRQKRKLNFLISQTELYSHFIGRKIPGAGGES 700
Query: 895 Y-AVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACA 953
A + T+ + G+K+T S + A A
Sbjct: 701 GDAGVQG--TEAMDLTPGAGAKVTNFEDLDFDAEDDTALRQAAMANAQSAVQKAQERARA 758
Query: 954 GEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWML 1013
++ N+ M+ D S +N + ++ + + QP+ML A L++YQ+ GL W++
Sbjct: 759 FDDP---NKST-MDT-MDDSELN--FQNPTSLGDIEISQPTMLTA-KLKEYQLKGLNWLV 810
Query: 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWL 1073
+LY +NGILADEMGLGKT+Q ++++AYL E +GP L+I P + L NW+ E+ K++
Sbjct: 811 NLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFV 870
Query: 1074 PSVSCIYYVG-AKDQRS-RLF--SQEVAALK---FNVLVTTYEFIMYDRSKLSKVDWKYI 1126
P++ + Y G AKD++ R F + + K F+VLVT+Y+ ++ D KV W+Y+
Sbjct: 871 PNIKVLPYWGNAKDRKILRKFWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYM 930
Query: 1127 IIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAF 1186
I+DEAQ +K +S + L + C+ RLLLTGTP+QN+ P +FD+ F
Sbjct: 931 ILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEF 990
Query: 1187 HDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSI 1246
+WFS+ + +H + L ++ + RLH IL+PFMLRR + V+ L KV
Sbjct: 991 SEWFSKDIE----SHAQSNTKLNEDQ----LRRLHMILKPFMLRRVKKHVQQELGDKVEK 1042
Query: 1247 VLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306
+ C ++ Q A+Y ++ RV D ++K + TL N M+ RK CN
Sbjct: 1043 DVFCDLTYRQRALYTNLRN----RVSIMD---LIEKAAVGDETDSTTLMNLVMQFRKVCN 1095
Query: 1307 HP 1308
HP
Sbjct: 1096 HP 1097
Score = 343 (125.8 bits), Expect = 9.6e-76, Sum P(3) = 9.6e-76
Identities = 87/230 (37%), Positives = 127/230 (55%)
Query: 1324 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383
V GKL LD +L +L+ GHRVLL+ MT+++D++EEYL +R Y R+DG+T LEDR
Sbjct: 1317 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1376
Query: 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1443
+ DF D F+FLLS RA G G+NL +ADTVI YD D NP + QA+ RAHR+GQ
Sbjct: 1377 RDTVADFQQRP-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQ 1435
Query: 1444 KREVKV---IYMEAVVDKISSH--QKEDELR---SGGTVDLED-DLAGKDRYIGSIEGLI 1494
R+V V I + ++I QKE+ R SGG D + +D I +
Sbjct: 1436 TRQVTVYRLITRSTIEERIRKRALQKEEVQRVVISGGAAGGVDFNTRNRDSKTKDIAMWL 1495
Query: 1495 RNNIQQYKIDMAD-------EVINAGRFDQRTTHEERR-MTLETLLHDEE 1536
++ Q I+ + E A + ++ + +R +TL+ + H+ E
Sbjct: 1496 ADDEQAELIEQKEREALERGETFGASKGGKKNAQKRKRDVTLDDMYHEGE 1545
Score = 54 (24.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 781 DRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ 813
+R+ R RL E+Q +E ++ + ++A R+K+
Sbjct: 641 EREERDLRRLAEKQELESAKRAEAEREANRQKR 673
Score = 49 (22.3 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 31/135 (22%), Positives = 58/135 (42%)
Query: 719 KKRSENLKKISGILAVNLERKRIRPDLVLRLQIEXXXXXXXXXXXXXXXEVDQQQQEIMA 778
KKR+ ++++ A ++ RKR R D +L+L E+ A
Sbjct: 329 KKRALDVER-----AESIRRKRRRHDYLLKLGKSFEKQANAGMDRFRYANEASVISEVQA 383
Query: 779 --MPDRQYRKFVRLCERQRVELMR-QVQTSQKA-MREKQLKSISQWRKKLLEAHWAIRDA 834
+ D + RK +R+R +R ++Q +A ++ + + ++ K L EA A R
Sbjct: 384 KEIQDEKERKKDMQRKRRRENTVRMEMQKKLEAELKANETQDSAEKAKFLREAERAQRKI 443
Query: 835 RTARN--RGVAKYHE 847
+T + GV + E
Sbjct: 444 KTTKRALEGVTEPEE 458
Score = 39 (18.8 bits), Expect = 9.6e-76, Sum P(3) = 9.6e-76
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 415 DQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIP 447
D+PLP+ P ++ + RS + +P
Sbjct: 522 DEPLPLAPREDPRKESLKKDAKGGRSKEATPVP 554
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 545 (196.9 bits), Expect = 1.1e-75, Sum P(4) = 1.1e-75
Identities = 124/352 (35%), Positives = 196/352 (55%)
Query: 968 APRDGSSVNKYYSLAHA---VNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
A + G+ + YSLA+ E + QP++ G L+ YQ+ G+ W+ +LY +NGIL
Sbjct: 493 ANKSGTGFGESYSLANPSIRAGEDIP-QPTIFN-GKLKGYQLKGMNWLANLYEQGINGIL 550
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKTVQ +AL+A+L E + +GP LII P + L NW E +++P + Y G
Sbjct: 551 ADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGN 610
Query: 1085 KDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138
R R +SQ+ + F+V++T+Y+ ++ D +V W+Y+++DEAQ +K
Sbjct: 611 PHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSS 670
Query: 1139 SVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEG 1198
SV + L +++C+ RLLLTGTP+QN P +FD+ + F++WFS+ +
Sbjct: 671 SVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA 730
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
+A D E + + RLH IL+PFMLRR +DVE L K+ I++ C++++ Q
Sbjct: 731 ENKSAID---ENQ-----LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKL 782
Query: 1259 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
+Y +K ++ ED + + +L N M+ RK CNHP L
Sbjct: 783 LYQALKN----KISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPEL 830
Score = 339 (124.4 bits), Expect = 1.1e-75, Sum P(4) = 1.1e-75
Identities = 73/173 (42%), Positives = 111/173 (64%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1103 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1163 ISERRDMVADFQTRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1221
Query: 1440 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 1484
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1222 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1273
Score = 44 (20.5 bits), Expect = 1.1e-75, Sum P(4) = 1.1e-75
Identities = 28/127 (22%), Positives = 55/127 (43%)
Query: 793 RQRVELMRQVQTSQKAMREK-QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
R++V L + KA ++K +++ + L AH +++ R A + E + R
Sbjct: 286 RRKVWLSIVKKELPKANKQKASARNLFLTNSRKL-AHQCMKEVRRAALQAQKNCKETLPR 344
Query: 852 EFSKRKDDDRN-KRMEALKNNDVERYREMLLEQQT--SIPGDAAERYAVLSSFLTQTEEY 908
K+ K+ E ++ +R + LEQ+ +A + L+ +TQTE Y
Sbjct: 345 ARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELY 404
Query: 909 LYKLGSK 915
+ + K
Sbjct: 405 AHFMSRK 411
Score = 41 (19.5 bits), Expect = 1.1e-75, Sum P(4) = 1.1e-75
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEI 1646
ERKR K +KY K+ +DE+
Sbjct: 1306 ERKR--KREKYAEKKKKEDEL 1324
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 545 (196.9 bits), Expect = 1.1e-75, Sum P(4) = 1.1e-75
Identities = 124/352 (35%), Positives = 196/352 (55%)
Query: 968 APRDGSSVNKYYSLAHA---VNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
A + G+ + YSLA+ E + QP++ G L+ YQ+ G+ W+ +LY +NGIL
Sbjct: 493 ANKSGTGFGESYSLANPSIRAGEDIP-QPTIFN-GKLKGYQLKGMNWLANLYEQGINGIL 550
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKTVQ +AL+A+L E + +GP LII P + L NW E +++P + Y G
Sbjct: 551 ADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGN 610
Query: 1085 KDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138
R R +SQ+ + F+V++T+Y+ ++ D +V W+Y+++DEAQ +K
Sbjct: 611 PHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSS 670
Query: 1139 SVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEG 1198
SV + L +++C+ RLLLTGTP+QN P +FD+ + F++WFS+ +
Sbjct: 671 SVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA 730
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
+A D E + + RLH IL+PFMLRR +DVE L K+ I++ C++++ Q
Sbjct: 731 ENKSAID---ENQ-----LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKL 782
Query: 1259 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
+Y +K ++ ED + + +L N M+ RK CNHP L
Sbjct: 783 LYQALKN----KISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPEL 830
Score = 339 (124.4 bits), Expect = 1.1e-75, Sum P(4) = 1.1e-75
Identities = 73/173 (42%), Positives = 111/173 (64%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1103 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1163 ISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1221
Query: 1440 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 1484
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1222 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1273
Score = 44 (20.5 bits), Expect = 1.1e-75, Sum P(4) = 1.1e-75
Identities = 28/127 (22%), Positives = 55/127 (43%)
Query: 793 RQRVELMRQVQTSQKAMREK-QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
R++V L + KA ++K +++ + L AH +++ R A + E + R
Sbjct: 286 RRKVWLSIVKKELPKANKQKASARNLFLTNSRKL-AHQCMKEVRRAALQAQKNCKETLPR 344
Query: 852 EFSKRKDDDRN-KRMEALKNNDVERYREMLLEQQT--SIPGDAAERYAVLSSFLTQTEEY 908
K+ K+ E ++ +R + LEQ+ +A + L+ +TQTE Y
Sbjct: 345 ARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELY 404
Query: 909 LYKLGSK 915
+ + K
Sbjct: 405 AHFMSRK 411
Score = 41 (19.5 bits), Expect = 1.1e-75, Sum P(4) = 1.1e-75
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEI 1646
ERKR K +KY K+ +DE+
Sbjct: 1306 ERKR--KREKYAEKKKKEDEL 1324
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 448 (162.8 bits), Expect = 1.7e-75, Sum P(4) = 1.7e-75
Identities = 134/383 (34%), Positives = 201/383 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 681 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 739
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 740 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 788
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 789 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 848
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHR G +V + +
Sbjct: 849 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLV 908
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 1506
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 909 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 968
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 1560
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 969 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1025
Query: 1561 EVELFDQMDEEFGWIEEMTRYDQ 1583
++EL + + + W EE+ DQ
Sbjct: 1026 DIELEPERNSK-NW-EEIIPEDQ 1046
Score = 444 (161.4 bits), Expect = 1.7e-75, Sum P(4) = 1.7e-75
Identities = 104/281 (37%), Positives = 157/281 (55%)
Query: 991 RQPSML--RAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + G LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 463 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 522
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W ++ + Y+G + R+ + + E LKFN
Sbjct: 523 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 582
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE ++ D++ L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 583 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 642
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N PE F + W + F++E H ++ LH+
Sbjct: 643 NSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGREYGYAS--------LHK 683
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 684 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 724
Score = 49 (22.3 bits), Expect = 7.2e-35, Sum P(3) = 7.2e-35
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 967 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1025
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P + RR
Sbjct: 1026 DIELEP--ERNSKNWEEIIPEDQRRR 1049
Score = 44 (20.5 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
Identities = 24/104 (23%), Positives = 40/104 (38%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA--RD--LDRYRCQRRLLLTGTPLQNDXXXXX 1169
D S+ +KV K +D A+ K S+LA R L + + Q+ + + + D
Sbjct: 68 DNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSE 127
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
EV + DW Q P+ + D E E++
Sbjct: 128 DSDDSSS-EVKRKKHKDEDW--QMSGSGSPSQSGSDSESEEERE 168
Score = 42 (19.8 bits), Expect = 1.7e-75, Sum P(4) = 1.7e-75
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1777 HMDHQQSGSWTHDR 1790
H DH+ S +TH +
Sbjct: 1729 HSDHRSSSEYTHHK 1742
Score = 41 (19.5 bits), Expect = 1.7e-75, Sum P(4) = 1.7e-75
Identities = 18/104 (17%), Positives = 43/104 (41%)
Query: 806 QKAMREKQLKSISQWRK-KLLEAHWAIRDARTARN-RGVAKYHERILREFSKRKDDDRNK 863
+K +++ + +W+ + W + +N RG+ K L + K+KD + +
Sbjct: 303 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKK-----LDNY-KKKDQETKR 356
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
++ DVE Y Q + D ++Y ++ + + +
Sbjct: 357 WLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 395
Score = 41 (19.5 bits), Expect = 2.2e-75, Sum P(4) = 2.2e-75
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 1790 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 1831
R+ E + + K ++ + + ER ++ S +D P+H
Sbjct: 1440 RENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVH 1481
Score = 38 (18.4 bits), Expect = 6.1e-33, Sum P(4) = 6.1e-33
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 1412 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 1452
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1021 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1064
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 539 (194.8 bits), Expect = 1.8e-75, Sum P(4) = 1.8e-75
Identities = 124/353 (35%), Positives = 197/353 (55%)
Query: 968 APRDGSSVNKYYSLAHA---VNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
A + G+ + YSLA+ E + QP++ G L+ YQ+ G+ W+ +LY +NGIL
Sbjct: 489 ANKSGTGFGESYSLANPSIRAGEDIP-QPTIFN-GKLKGYQLKGMNWLANLYEQGINGIL 546
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKTVQ +AL+A+L E + +GP LII P + L NW E +++P + Y G
Sbjct: 547 ADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFARFVPKFKVLPYWGN 606
Query: 1085 KDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138
R + +SQ+ + F+V++T+Y+ ++ D +V W+Y+++DEAQ +K
Sbjct: 607 PHDRKVIRKFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSS 666
Query: 1139 SVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEG 1198
SV + L +++C+ RLLLTGTP+QN P +FD+ + F++WFS+ +
Sbjct: 667 SVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA 726
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
+A D E + + RLH IL+PFMLRR +DVE L K+ I++ C+ ++ Q
Sbjct: 727 ENKSAID---ENQ-----LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQQTSRQKL 778
Query: 1259 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY-KTLNNRCMELRKTCNHPLL 1310
+Y +K ++ D+ + QA+ +L N M+ RK CNHP L
Sbjct: 779 LYQALKNKISI-----DDLLQSSMGTTQQAQTTTSSLMNLVMQFRKVCNHPEL 826
Score = 336 (123.3 bits), Expect = 1.8e-75, Sum P(4) = 1.8e-75
Identities = 73/173 (42%), Positives = 110/173 (63%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K+ L+ GKL LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1101 KESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1160
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1161 ISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1219
Query: 1440 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 1484
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1220 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1271
Score = 51 (23.0 bits), Expect = 1.8e-75, Sum P(4) = 1.8e-75
Identities = 30/127 (23%), Positives = 55/127 (43%)
Query: 793 RQRVELMRQVQTSQKAMREK-QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
R++V L + KA ++K +++ K L AH +R+ R A + E + R
Sbjct: 282 RRKVWLSIVKKELPKAYKQKASARNLFLTNSKKL-AHQCMREVRRAALQAQKNCKETLPR 340
Query: 852 EFSKRKDDDRN-KRMEALKNNDVERYREMLLEQQT--SIPGDAAERYAVLSSFLTQTEEY 908
K+ K+ E ++ +R + LEQ+ +A + L+ +TQTE Y
Sbjct: 341 ARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELY 400
Query: 909 LYKLGSK 915
+ + K
Sbjct: 401 AHFMSRK 407
Score = 41 (19.5 bits), Expect = 1.8e-75, Sum P(4) = 1.8e-75
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEI 1646
ERKR K +KY K+ +DE+
Sbjct: 1304 ERKR--KREKYAEKKKKEDEL 1322
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 448 (162.8 bits), Expect = 7.3e-75, Sum P(5) = 7.3e-75
Identities = 134/383 (34%), Positives = 201/383 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 680 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 738
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 739 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 787
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 788 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 847
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHR G +V + +
Sbjct: 848 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLV 907
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 1506
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 908 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 967
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 1560
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 968 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1024
Query: 1561 EVELFDQMDEEFGWIEEMTRYDQ 1583
++EL + + + W EE+ DQ
Sbjct: 1025 DIELEPERNSK-NW-EEIIPEDQ 1045
Score = 444 (161.4 bits), Expect = 7.3e-75, Sum P(5) = 7.3e-75
Identities = 104/281 (37%), Positives = 157/281 (55%)
Query: 991 RQPSML--RAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + G LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 462 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 521
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W ++ + Y+G + R+ + + E LKFN
Sbjct: 522 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 581
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE ++ D++ L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 582 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 641
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N PE F + W + F++E H ++ LH+
Sbjct: 642 NSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGREYGYAS--------LHK 682
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 683 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 723
Score = 49 (22.3 bits), Expect = 3.5e-34, Sum P(4) = 3.5e-34
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 966 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1024
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P + RR
Sbjct: 1025 DIELEP--ERNSKNWEEIIPEDQRRR 1048
Score = 44 (20.5 bits), Expect = 6.9e-35, Sum P(3) = 6.9e-35
Identities = 24/104 (23%), Positives = 40/104 (38%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA--RD--LDRYRCQRRLLLTGTPLQNDXXXXX 1169
D S+ +KV K +D A+ K S+LA R L + + Q+ + + + D
Sbjct: 67 DNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSE 126
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
EV + DW Q P+ + D E E++
Sbjct: 127 DSDDSSS-EVKRKKHKDEDW--QMSGSGSPSQSGSDSESEEERE 167
Score = 43 (20.2 bits), Expect = 7.3e-75, Sum P(5) = 7.3e-75
Identities = 23/101 (22%), Positives = 39/101 (38%)
Query: 560 NVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECG 619
+V++ E + + DD + S G G S+ + G Q S SD E G
Sbjct: 9 SVRNSSGESSQSDDDSGSASGSGSGSSSGSSSD------GSSSQSG---SSDSDSGSESG 59
Query: 620 LLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQ 660
+Q +S+ R V + D + K + + A+Q
Sbjct: 60 ---SQSESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQ 97
Score = 42 (19.8 bits), Expect = 7.3e-75, Sum P(5) = 7.3e-75
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1777 HMDHQQSGSWTHDR 1790
H DH+ S +TH +
Sbjct: 1724 HSDHRSSSEYTHHK 1737
Score = 41 (19.5 bits), Expect = 7.3e-75, Sum P(5) = 7.3e-75
Identities = 18/104 (17%), Positives = 43/104 (41%)
Query: 806 QKAMREKQLKSISQWRK-KLLEAHWAIRDARTARN-RGVAKYHERILREFSKRKDDDRNK 863
+K +++ + +W+ + W + +N RG+ K L + K+KD + +
Sbjct: 302 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKK-----LDNY-KKKDQETKR 355
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
++ DVE Y Q + D ++Y ++ + + +
Sbjct: 356 WLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 394
Score = 41 (19.5 bits), Expect = 9.2e-75, Sum P(5) = 9.2e-75
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 1790 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 1831
R+ E + + K ++ + + ER ++ S +D P+H
Sbjct: 1435 RENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVH 1476
Score = 38 (18.4 bits), Expect = 1.3e-32, Sum P(5) = 1.3e-32
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 1412 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 1452
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1020 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1063
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 448 (162.8 bits), Expect = 7.4e-75, Sum P(5) = 7.4e-75
Identities = 134/383 (34%), Positives = 201/383 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 680 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 738
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 739 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 787
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 788 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 847
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHR G +V + +
Sbjct: 848 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLV 907
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 1506
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 908 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 967
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 1560
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 968 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1024
Query: 1561 EVELFDQMDEEFGWIEEMTRYDQ 1583
++EL + + + W EE+ DQ
Sbjct: 1025 DIELEPERNSK-NW-EEIIPEDQ 1045
Score = 444 (161.4 bits), Expect = 7.4e-75, Sum P(5) = 7.4e-75
Identities = 104/281 (37%), Positives = 157/281 (55%)
Query: 991 RQPSML--RAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + G LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 462 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 521
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W ++ + Y+G + R+ + + E LKFN
Sbjct: 522 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 581
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE ++ D++ L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 582 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 641
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N PE F + W + F++E H ++ LH+
Sbjct: 642 NSLKELWSLLHFIMPEKFSS------W--EDFEEE---HGKGREYGYAS--------LHK 682
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI
Sbjct: 683 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI 723
Score = 49 (22.3 bits), Expect = 3.5e-34, Sum P(4) = 3.5e-34
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 966 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1024
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P + RR
Sbjct: 1025 DIELEP--ERNSKNWEEIIPEDQRRR 1048
Score = 44 (20.5 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
Identities = 24/104 (23%), Positives = 40/104 (38%)
Query: 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA--RD--LDRYRCQRRLLLTGTPLQNDXXXXX 1169
D S+ +KV K +D A+ K S+LA R L + + Q+ + + + D
Sbjct: 67 DNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSE 126
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
EV + DW Q P+ + D E E++
Sbjct: 127 DSDDSSS-EVKRKKHKDEDW--QMSGSGSPSQSGSDSESEEERE 167
Score = 43 (20.2 bits), Expect = 7.4e-75, Sum P(5) = 7.4e-75
Identities = 23/101 (22%), Positives = 39/101 (38%)
Query: 560 NVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECG 619
+V++ E + + DD + S G G S+ + G Q S SD E G
Sbjct: 9 SVRNSSGESSQSDDDSGSASGSGSGSSSGSSSD------GSSSQSG---SSDSDSGSESG 59
Query: 620 LLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQ 660
+Q +S+ R V + D + K + + A+Q
Sbjct: 60 ---SQSESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQ 97
Score = 42 (19.8 bits), Expect = 7.4e-75, Sum P(5) = 7.4e-75
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1777 HMDHQQSGSWTHDR 1790
H DH+ S +TH +
Sbjct: 1728 HSDHRSSSEYTHHK 1741
Score = 41 (19.5 bits), Expect = 7.4e-75, Sum P(5) = 7.4e-75
Identities = 18/104 (17%), Positives = 43/104 (41%)
Query: 806 QKAMREKQLKSISQWRK-KLLEAHWAIRDARTARN-RGVAKYHERILREFSKRKDDDRNK 863
+K +++ + +W+ + W + +N RG+ K L + K+KD + +
Sbjct: 302 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKK-----LDNY-KKKDQETKR 355
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
++ DVE Y Q + D ++Y ++ + + +
Sbjct: 356 WLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 394
Score = 41 (19.5 bits), Expect = 9.4e-75, Sum P(5) = 9.4e-75
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 1790 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 1831
R+ E + + K ++ + + ER ++ S +D P+H
Sbjct: 1439 RENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVH 1480
Score = 38 (18.4 bits), Expect = 1.4e-32, Sum P(5) = 1.4e-32
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 1412 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 1452
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1020 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1063
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 522 (188.8 bits), Expect = 8.0e-75, Sum P(3) = 8.0e-75
Identities = 123/355 (34%), Positives = 200/355 (56%)
Query: 984 AVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043
++ E + QP +L A TL++YQ+ GL W+ +LY+ +NGILADEMGLGKTVQ ++++A+L
Sbjct: 690 SLGEITIEQPKIL-ACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHL 748
Query: 1044 MEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVG-AKDQRS-RLF--SQEVAAL 1099
E +GP L++ P + L NW +E+ K+LP + Y G A D++ R F + +
Sbjct: 749 AENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYN 808
Query: 1100 K---FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLL 1156
K F+V+VT+Y+ ++ D + L K+ W+Y+I+DEAQ +K +S ++L + C+ RLLL
Sbjct: 809 KNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLL 868
Query: 1157 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTP+QN P +FD+ F++WFS+ + +H + L ++
Sbjct: 869 TGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIE----SHAEANTKLNQQQ---- 920
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
+ RLH IL+PFMLRR ++V+ L K+ I + C ++ Q+ +Y +K+ + D +
Sbjct: 921 LRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQVLKSQISTNYDAIEN 980
Query: 1277 KRRVQK--NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGK 1329
N + + L N M+ RK CNHP L +D+ F + GK
Sbjct: 981 AATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLFER--ADVDSPFSFTTFGK 1033
Score = 324 (119.1 bits), Expect = 8.0e-75, Sum P(3) = 8.0e-75
Identities = 67/143 (46%), Positives = 97/143 (67%)
Query: 1310 LNYPYFSDLSK---DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW 1366
LN + S++S D + KL LD +L+KL+ GHRVL++ MTK++D++EEYL +
Sbjct: 1278 LNKNFSSNISMPSMDRFITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTY 1337
Query: 1367 RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 1426
RQ + R+DG++ LEDR + D+ ++ + F+FLLS RA G G+NL +ADTVI YD D
Sbjct: 1338 RQYNHIRLDGSSKLEDRRDLVHDWQTNP-EIFVFLLSTRAGGLGINLTAADTVIFYDSDW 1396
Query: 1427 NPKNEEQAVARAHRIGQKREVKV 1449
NP + QA+ RAHR+GQ R+V V
Sbjct: 1397 NPTIDSQAMDRAHRLGQTRQVTV 1419
Score = 64 (27.6 bits), Expect = 8.0e-75, Sum P(3) = 8.0e-75
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 798 LMRQVQTSQKAMREKQLKSISQWRKKLLEAHWA-IRDARTARNRGVAKYHERILREFSKR 856
L++Q+Q+ + K ++ KK ++ I+D +T RG+ R + F K+
Sbjct: 491 LVQQIQSIRSTNFRKTSSLCAREAKKWQSKNFKQIKDFQTRARRGI-----REMSNFWKK 545
Query: 857 KDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKI 916
++R +R + K + E + E++ A++ L+ LTQTE Y + +G KI
Sbjct: 546 --NEREER-DLKKKIEKEAMEQAKKEEEEKESKRQAKK---LNFLLTQTELYSHFIGRKI 599
Score = 53 (23.7 bits), Expect = 1.1e-73, Sum P(3) = 1.1e-73
Identities = 21/98 (21%), Positives = 48/98 (48%)
Query: 774 QEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRD 833
Q+I ++ +RK LC R E + + K +++ Q ++ R+ + W ++
Sbjct: 493 QQIQSIRSTNFRKTSSLCAR---EAKKWQSKNFKQIKDFQTRARRGIRE--MSNFWK-KN 546
Query: 834 ARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNN 871
R R+ + K E+ E +K++++++ + +A K N
Sbjct: 547 EREERD--LKKKIEKEAMEQAKKEEEEKESKRQAKKLN 582
Score = 44 (20.5 bits), Expect = 1.0e-72, Sum P(3) = 1.0e-72
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 844 KYHERILREFSKRKDDDRNKRMEALKNN 871
+YH + L++ +R +R EALKNN
Sbjct: 379 QYHVKRLKKLINDAKRER-EREEALKNN 405
Score = 43 (20.2 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 17/99 (17%), Positives = 43/99 (43%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEA 827
E D++++EI + + + F + + V+ R K+ S S K + +
Sbjct: 259 EEDEEEEEIEDLDEEDFAAFEEQDDNDDEDFNPDVEK-----RRKRSSSSSSSTKLSMNS 313
Query: 828 HWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRME 866
I + +N + +I+RE K + +++++++
Sbjct: 314 LSLITSKKINKNITINSDRPKIVRELIKMCNKNKHQKIK 352
Score = 43 (20.2 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 1599 IANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
++ L+ +PS N F + + ER GPK ++K + E+ E + + E
Sbjct: 1128 LSKLTGEPSLNEFFRVSTTPLLKRV-IERTNGPKNTDSLSFKTITQELLEVTRNAPSE 1184
Score = 43 (20.2 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 13/64 (20%), Positives = 31/64 (48%)
Query: 785 RKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAK 844
RK +R + +M V + Q + + +W+ +L+ AI+ ++++R + +
Sbjct: 802 RKNLRYNKNAPFHVM--VTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLS 859
Query: 845 YHER 848
+H R
Sbjct: 860 FHCR 863
Score = 40 (19.1 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 1094 QEVAALKF-NVLVTTYEFIMYDRSKLS-KVDWKYI-------IIDEAQRMKDRESVLARD 1144
Q++ +F N +VT Y I D SKL+ K+ K +I++A+R ++RE L +
Sbjct: 349 QKIKKRRFTNCIVTDYNPI--D-SKLNIKITLKQYHVKRLKKLINDAKREREREEALKNN 405
Query: 1145 L 1145
+
Sbjct: 406 V 406
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 571 (206.1 bits), Expect = 8.6e-75, Sum P(5) = 8.6e-75
Identities = 116/278 (41%), Positives = 169/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR G LR+YQ +GL W++++Y KLNGILADEMGLGKT+Q ++L+A+L KGN+GP
Sbjct: 619 PLLLR-GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 677
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ EL +W PS + Y GA+ +R F+V +T+Y+ ++
Sbjct: 678 HLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 737
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + +W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN
Sbjct: 738 QDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLM 797
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + + + E ++ RLH++L PF+LRR
Sbjct: 798 HFLMPHVFQSHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRV 849
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 1270
DVE +P K V+RCR+S Q +YD A T +
Sbjct: 850 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK 887
Score = 297 (109.6 bits), Expect = 8.6e-75, Sum P(5) = 8.6e-75
Identities = 67/165 (40%), Positives = 103/165 (62%)
Query: 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1374
F DL + CGKL L +L +L+ GHRVL+F+ MT++LD+LE++L + +Y R+
Sbjct: 2043 FPDLR--LIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRL 2100
Query: 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434
DG+T +E R++ + FN+ D F F+LS R+ G G+NL ADTV+ YD D NP + QA
Sbjct: 2101 DGSTRVEQRQALMERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2159
Query: 1435 VARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLE 1477
R HRIGQ R+V + + E V++ + +K ++ R G + +E
Sbjct: 2160 QDRCHRIGQTRDVHIYRLISERTVEE-NILKKANQKRMLGDMAIE 2203
Score = 137 (53.3 bits), Expect = 3.9e-29, Sum P(5) = 3.9e-29
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 833 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 886
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
K + + ++ N M+LRK CNHP L P
Sbjct: 887 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 917
Score = 72 (30.4 bits), Expect = 8.6e-75, Sum P(5) = 8.6e-75
Identities = 31/141 (21%), Positives = 55/141 (39%)
Query: 535 SGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQ----GMSAVTK 590
SG E+ +E+N D + ++ + P+E++ + D A + T
Sbjct: 465 SGSSEEEDEDEVEANSSDCEPEGATEAEEAPQEDSSSQSDSAEEQSEDEDEEHSEEEETS 524
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQE--------VECGLLRTQQQSDFPADRGKSV-APQV 641
E + EE + S ++D+E VE L R ++QS+ G P
Sbjct: 525 ESSESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTT 584
Query: 642 SACDAVQVKKPAQATTALQPK 662
+ ++ A A +LQPK
Sbjct: 585 TLGPKKEITDIAAAAESLQPK 605
Score = 56 (24.8 bits), Expect = 1.1e-17, Sum P(5) = 1.1e-17
Identities = 29/123 (23%), Positives = 47/123 (38%)
Query: 305 NMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPL-GSTTSA 363
++G +P+P S + P + +SP + P PS L G +S
Sbjct: 1365 SLGTARAPIPTST--LVRPLLKLVHSPSPEVSASAPGAAPLTISSPLPVPSSLPGPASSP 1422
Query: 364 AXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNS 423
++ S V S P+++ LP P S +T + PLPV ++
Sbjct: 1423 VPVPNSSPLASPVSSTVSVP--VSSSLPISVSTTLPS---P-ASAPLTIPISAPLPV-SA 1475
Query: 424 SGP 426
SGP
Sbjct: 1476 SGP 1478
Score = 55 (24.4 bits), Expect = 1.4e-18, Sum P(4) = 1.4e-18
Identities = 35/139 (25%), Positives = 52/139 (37%)
Query: 308 APSSPVPVS---KQQVTSPTIAGENSPHANXXXXXXXXXXXAKA-RP----TVSPSPLGS 359
APS P P S Q + P +A ++P A A P T+ P+P+ S
Sbjct: 1621 APS-PGPTSVLASSQTSVPVLASSSTPGTPLASASSLGPAPAAALAPSSAQTMVPAPVPS 1679
Query: 360 TTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQ-PL 418
+ + S G + PS Q +++G G P +L++TP P
Sbjct: 1680 PLPSPASTQTLALPPALASTLGGSS--PS-QTLSLGTGNPQSPFSAQTLSLTPASSLVPA 1736
Query: 419 PVKNSS---GPENSQMQYL 434
P + S GP Q L
Sbjct: 1737 PAQTLSLAPGPPLGPSQTL 1755
Score = 54 (24.1 bits), Expect = 6.4e-73, Sum P(5) = 6.4e-73
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
+Q+Q+E A + Q K R+ ++ + +K ++ KQ + + RKK L+ H
Sbjct: 175 EQRQKEERARREEQ-AKLRRIASAMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLH 232
Score = 53 (23.7 bits), Expect = 4.3e-17, Sum P(5) = 4.3e-17
Identities = 25/90 (27%), Positives = 37/90 (41%)
Query: 278 PANASLIAQLIPIMQSRI--VANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANX 335
PA ASL+A Q+ +A A ++ + APS P++ V +P+ G S A+
Sbjct: 1575 PAQASLLAPAPTASQALATSLAPMVAPQTAILAPSPAPPLAPLPVLAPS-PGPTSVLASS 1633
Query: 336 XXXX-XXXXXXAKARPTVSPSPLGSTTSAA 364
P S S LG +AA
Sbjct: 1634 QTSVPVLASSSTPGTPLASASSLGPAPAAA 1663
Score = 49 (22.3 bits), Expect = 8.6e-75, Sum P(5) = 8.6e-75
Identities = 21/94 (22%), Positives = 33/94 (35%)
Query: 1820 PEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQ---SEPSSKS 1876
PE T P S LP + A+ R + + G S + + P+ K
Sbjct: 2810 PESSPPTSGPCEVASPSTLPTPTQQPFIARRRIELGLTGGGSSENGEGALLAITPPAVKR 2869
Query: 1877 RRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDA 1910
RR P +K + + + L+ G T A
Sbjct: 2870 RRGRPPKKNRSPADAGRGVDEAPLSTSKGKTNGA 2903
Score = 49 (22.3 bits), Expect = 8.6e-17, Sum P(5) = 8.6e-17
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 577 AVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSV 610
+ SP G + ++ P PV++P + P+ V
Sbjct: 1060 SASPSGPPLIPASRPPGPVLLPPLQPNSGPLPQV 1093
Score = 48 (22.0 bits), Expect = 5.5e-17, Sum P(5) = 5.5e-17
Identities = 20/62 (32%), Positives = 23/62 (37%)
Query: 386 VPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSA 445
+PS V G PP P SL P P PV+ S P L+ L P A
Sbjct: 1094 LPSPLGVLSGTSRPPT--PTLSLKPAP----PAPVRLSPAPPPGSSNLLKPLT-VPPGYA 1146
Query: 446 IP 447
P
Sbjct: 1147 FP 1148
Score = 47 (21.6 bits), Expect = 1.7e-16, Sum P(5) = 1.7e-16
Identities = 39/184 (21%), Positives = 72/184 (39%)
Query: 275 LSQPANASLIAQLIPIM-QSRIVANHKANESNMGAPSS-PVPVSKQQVTSPTIAGENSPH 332
+SQPA+ +LI + P + + + S AP+ +P++ QV PT+ N+
Sbjct: 1259 ISQPAHVALIQAVAPTPGPTPVSVLPSSTPSTTPAPTGLSLPLAANQVP-PTMV--NNTG 1315
Query: 333 ANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPV 392
P ++P+P +S +L + + +R P+
Sbjct: 1316 VVKIVVRQAPRDGLTPVPPLAPAPR-PPSSGLPAVLTPRPTLPPGRLP-TPSLGTARAPI 1373
Query: 393 AIGNGLPP----IHPPQTSLNMT-PG-----VDQPLPVKNS-SGPENSQMQYLRQLNRSS 441
+ P +H P ++ + PG + PLPV +S GP +S + +S
Sbjct: 1374 PTSTLVRPLLKLVHSPSPEVSASAPGAAPLTISSPLPVPSSLPGPASSPVPVPNSSPLAS 1433
Query: 442 PQSA 445
P S+
Sbjct: 1434 PVSS 1437
Score = 43 (20.2 bits), Expect = 2.1e-16, Sum P(5) = 2.1e-16
Identities = 29/122 (23%), Positives = 45/122 (36%)
Query: 309 PSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTV----SPSP--LGSTTS 362
PSS +P PT+ P + RP + SPSP S
Sbjct: 1342 PSSGLPAVL--TPRPTLPPGRLPTPSLGTARAPIPTSTLVRPLLKLVHSPSPEVSASAPG 1399
Query: 363 AAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKN 422
AA + + S+ G P+ PV + N P P +++++ P V LP+
Sbjct: 1400 AAPLTISSPLPVPS-SLPG-----PASSPVPVPNSSPLASPVSSTVSV-P-VSSSLPISV 1451
Query: 423 SS 424
S+
Sbjct: 1452 ST 1453
Score = 42 (19.8 bits), Expect = 1.1e-71, Sum P(5) = 1.1e-71
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
+++ G AE Q R +E ++ + ++SLP + G + +P + T+
Sbjct: 308 EEQQEGNDAETQRREIELLRREGELPLEELLRSLPPQ-LLGGPSSPSGTPSSH--ESDTR 364
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEV 616
+ P G EE+ + V VK V
Sbjct: 365 D-GPE--EGGEEEPSQVLKVKPPPSV 387
Score = 40 (19.1 bits), Expect = 8.6e-75, Sum P(5) = 8.6e-75
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVS 316
+PI+Q+++V++ + + SS P S
Sbjct: 12 LPILQTQMVSDGMTGSNPVSPASSSSPAS 40
Score = 40 (19.1 bits), Expect = 5.5e-17, Sum P(5) = 5.5e-17
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 580 PVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKS 612
PV + P PV P +PVSS S
Sbjct: 1410 PVPSSLPGPASSPVPV--PNSSPLASPVSSTVS 1440
Score = 39 (18.8 bits), Expect = 9.4e-74, Sum P(5) = 9.4e-74
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 1783 SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEE--RSCTDTPL 1830
+G + + EG + P +KR+R RP P + R + PL
Sbjct: 2847 TGGGSSENGEGALLAITPPAVKRRRG---RPPKKNRSPADAGRGVDEAPL 2893
Score = 39 (18.8 bits), Expect = 1.1e-17, Sum P(5) = 1.1e-17
Identities = 31/123 (25%), Positives = 42/123 (34%)
Query: 553 AQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVP----GKEEQQ---- 604
AQ +S + SL A A P+G + ++ PAP + P G
Sbjct: 1722 AQTLSLTPASSLVPAPAQTLS-LAPGPPLGPSQT-LSLAPAPTLAPVSPMGPAPAHTLTL 1779
Query: 605 APVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDV 664
APVSS S T + P A Q A + PA ++L
Sbjct: 1780 APVSSSASLLAPASVQTLTLSPAQVPVPTLGPAAAQTLALAPASTQSPASQASSLVVSSS 1839
Query: 665 GAA 667
GAA
Sbjct: 1840 GAA 1842
Score = 38 (18.4 bits), Expect = 2.9e-71, Sum P(5) = 2.9e-71
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 554 QAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSD 613
Q ++SS S P G AA SP G + P +EE++ +++ +
Sbjct: 253 QPLASSKAGSSP----CLGSSSAASSPPPPGSRMDDEAIDGDFQPQEEEEEDDEETIEVE 308
Query: 614 QEVECGLLRTQQQ 626
++ E TQ++
Sbjct: 309 EQQEGNDAETQRR 321
Score = 38 (18.4 bits), Expect = 5.3e-16, Sum P(5) = 5.3e-16
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 399 PPIHPPQTSLNMTPGVDQPLPVKNSSGP 426
PP+ P ++ +P +P GP
Sbjct: 1050 PPVLPAPLMVSASPSGPPLIPASRPPGP 1077
Score = 37 (18.1 bits), Expect = 2.5e-72, Sum P(4) = 2.5e-72
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 207 EQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQ 245
++ Q + G P P TLG + +I ++ Q
Sbjct: 565 DEEQSEADGGSGPPTPGPTTTLGPKKEITDIAAAAESLQ 603
Score = 37 (18.1 bits), Expect = 7.4e-48, Sum P(5) = 7.4e-48
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVI 1450
DP P PK + V R + K+E + +
Sbjct: 990 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1017
Score = 37 (18.1 bits), Expect = 8.6e-17, Sum P(5) = 8.6e-17
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 384 NQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENS 429
N++ P G + ++ P+T L P+PV+ GPE S
Sbjct: 1003 NRMLQPVPKQEGRTVVVVNSPRTPLG-------PVPVRPPPGPELS 1041
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 505 (182.8 bits), Expect = 2.0e-74, Sum P(3) = 2.0e-74
Identities = 113/326 (34%), Positives = 179/326 (54%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
QP M + GTL+ YQI G+ W+ ++Y+ ++GILADEMGLGKTVQ +A + ++ E G +G
Sbjct: 527 QPKMFK-GTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAEHYGVWG 585
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL---FSQE---VAALKFNVLV 1105
P L+I P + L NW+ E+ +++P + Y G+ +R L + Q+ F+V++
Sbjct: 586 PFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVVI 645
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDX 1165
T+Y+ ++ D +++ W+Y+++DEAQ +K S + L + C+ RLLL+GTP+QN
Sbjct: 646 TSYQLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSM 705
Query: 1166 XXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225
P +FD+ F++WFS+ + D EK+ I RLH IL+
Sbjct: 706 AELWALLHFIMPTLFDSHDEFNEWFSKDIESHAENKTGID-----EKQ---ISRLHMILK 757
Query: 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ-KNP 1284
PFMLRR +DVE L K+ I++ C ++ Q +Y +K +R+ ED
Sbjct: 758 PFMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRALKQK--IRI--EDLLHLTSGSTT 813
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLL 1310
+ L N M+ RK CNHP L
Sbjct: 814 TSSSSSASNLMNLVMQFRKVCNHPEL 839
Score = 355 (130.0 bits), Expect = 2.0e-74, Sum P(3) = 2.0e-74
Identities = 88/258 (34%), Positives = 143/258 (55%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K+ L+ GKL++LD +L +L+ GHRVL++S MTK++D+LEEY+ R+ Y R+DG++
Sbjct: 1148 KETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSK 1207
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+ R + DF + +D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1208 ISARRDMVADFQTR-ADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1266
Query: 1440 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD--RYIGS 1489
R+GQ ++V V I + ++I +E E++ SGG D L K+ +
Sbjct: 1267 RLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFK-PDTLKPKEVVSLLLD 1325
Query: 1490 IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLE-TLLHDEERYQETVHDVPSL 1548
E + Q+ K+ + + A + +++ H ++ + + T + Q DVPS
Sbjct: 1326 DEEIEMKYRQEAKLQSSSPIPAATQSERKRRHPQKDVNMGGTTIAATSATQNPDDDVPSC 1385
Query: 1549 QEVNRMIARSEDEVELFD 1566
+ I + E E + D
Sbjct: 1386 SSAAKRI-KLETEEDFID 1402
Score = 49 (22.3 bits), Expect = 2.0e-74, Sum P(3) = 2.0e-74
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 203 EKQMEQPQQQVSDQKGEPKP 222
+++ EQ Q+ V D K EP+P
Sbjct: 501 KEEEEQAQESVEDIKPEPRP 520
Score = 40 (19.1 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
Identities = 22/111 (19%), Positives = 49/111 (44%)
Query: 1797 QVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEM 1856
Q+L+P ++ K ++ P ++V + + T + +SS+ F Y Q + +
Sbjct: 959 QLLEPMLENKLALDYMPPNSVLK----NFIFTAMTANESSVYAFGDYFTYNMQETIEHRV 1014
Query: 1857 ---KAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP 1904
K + SL ++ E SK + + S ++ +++ +K L +P
Sbjct: 1015 IRSKILKKKTSLI-EEMEDVSKQKLEIESVEVQTKSNAKSDVKVTTLLLLP 1064
Score = 39 (18.8 bits), Expect = 2.2e-73, Sum P(3) = 2.2e-73
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 201 RGEKQMEQPQQQVSDQKGEPKPPSQQTLG 229
R KQ E ++++ + PKPP Q+ G
Sbjct: 191 RRTKQ-EILMARLAEAQAGPKPPKQRRRG 218
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 539 (194.8 bits), Expect = 2.6e-74, Sum P(4) = 2.6e-74
Identities = 149/540 (27%), Positives = 263/540 (48%)
Query: 785 RKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDA-----RTAR- 838
R + + + + L + + + + QLK+ + +A A+R+ R R
Sbjct: 452 RSMQQATQGRLINLRKTALLAAREAKRWQLKNTKNQKDLTTKARRAMREMFNFWKRNERL 511
Query: 839 NRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQ-QTSIPGDAAERYAV 897
R + K HE+ L + +K+++++R + ++ K N + E+ I D E
Sbjct: 512 ERDLKKKHEKELLDKAKKEEEEREAKRQSRKLNFLITQTELYSHFIGKKIKTDELEGTNA 571
Query: 898 LSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEV 957
+ + T+E+L K L+ ++ + ++A +
Sbjct: 572 DDNLKSNTKEHLDKYAD--VDGSATHDINAVDFDNDDEEALRRMAAQNAQNALIEVQNKA 629
Query: 958 MIRNRFLEM--NAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSL 1015
+ E N +G +N + + + + QP+ML+ TL++YQ+ GL W+ +L
Sbjct: 630 KQFDNSEESFKNPDTNGEEMN--FQNPTLLGDITIPQPNMLKC-TLKEYQLKGLNWLANL 686
Query: 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS 1075
Y +NGILADEMGLGKTVQ ++++AYL E +GP L++ P + L NW+ E+ K++P
Sbjct: 687 YEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPFLVVTPASTLHNWQQEITKFVPE 746
Query: 1076 VSCIYYVG-AKDQRSRLFSQEVAALK------FNVLVTTYEFIMYDRSKLSKVDWKYIII 1128
+ Y G AKD++ + +L+ F+VLVT+Y+ I+ D + K+ W+Y+I+
Sbjct: 747 FKVLPYWGNAKDRKILRKFWDRKSLRYDKDSPFHVLVTSYQLIVADIAYFQKMKWQYMIL 806
Query: 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHD 1188
DEAQ +K S + L C+ RLLLTGTP+QN P +FD+ F D
Sbjct: 807 DEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSIFDSHDEFSD 866
Query: 1189 WFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVL 1248
WF++ + ++ + D E++ + RLH IL+PFMLRR ++V+ L KV I +
Sbjct: 867 WFAKDIESHAQSNTSLD-----EQQ---LRRLHMILKPFMLRRIKKNVQSELGDKVEIDV 918
Query: 1249 RCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308
C ++ Q +Y +++ ++ + + ++ N +L N M+ RK CNHP
Sbjct: 919 YCDLTTRQKKLYQQLRSQISMS---DTDLLELESN---STSSDSSLANLVMQFRKVCNHP 972
Score = 331 (121.6 bits), Expect = 2.6e-74, Sum P(4) = 2.6e-74
Identities = 71/163 (43%), Positives = 100/163 (61%)
Query: 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367
P+ +Y S D + GKL LD +LI L+R GHR+L++ MT+++ I EEYL ++
Sbjct: 1216 PIFDYSNIRMPSMDRFIAESGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYK 1275
Query: 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPN 1427
Y R+DG+T++E R + + ++ + FIF+LS RA G GLNL SADTVI YD D N
Sbjct: 1276 SYKYIRLDGSTTIESRREMVQAWQTNP-EIFIFMLSTRAGGLGLNLTSADTVIFYDSDWN 1334
Query: 1428 PKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQKEDE 1467
P + QA+ RAHRIGQ ++VKV + + KI KE E
Sbjct: 1335 PTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKILERAKEKE 1377
Score = 43 (20.2 bits), Expect = 2.6e-74, Sum P(4) = 2.6e-74
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 566 KEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGK-EEQQAPVSSVKSDQEVE 617
++E D +++ V + + ++ V + K EEQQ ++D+E E
Sbjct: 343 EDELETADKQSSTQQVKKSQESTGRDHKRVKIENKQEEQQQHQQQQQADEEDE 395
Score = 43 (20.2 bits), Expect = 5.4e-22, Sum P(4) = 5.4e-22
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 693 VNSSNNLTLAYDVKDLLSEEGLEVLQKK-RSENLKKIS 729
+N S N Y KD+LS +E+ K +E L++I+
Sbjct: 1058 INVSPNELKHYSQKDILSR-AIEMQNKPTETEKLERIN 1094
Score = 40 (19.1 bits), Expect = 5.3e-74, Sum P(4) = 5.3e-74
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQ 225
E+Q + QQQ +D++ E + ++
Sbjct: 379 EEQQQHQQQQQADEEDEAEAEAE 401
Score = 39 (18.8 bits), Expect = 2.6e-74, Sum P(4) = 2.6e-74
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 108 AISQESQNRSQGVEHQLLN 126
A Q+ Q +++ V+H +N
Sbjct: 22 ATDQQQQQQAESVDHATIN 40
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 571 (206.1 bits), Expect = 8.4e-74, Sum P(4) = 8.4e-74
Identities = 116/278 (41%), Positives = 169/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR G LR+YQ +GL W++++Y KLNGILADEMGLGKT+Q ++L+A+L KGN+GP
Sbjct: 611 PLLLR-GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 669
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ EL +W PS + Y GA+ +R F+V +T+Y+ ++
Sbjct: 670 HLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 729
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + +W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN
Sbjct: 730 QDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLM 789
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + + + E ++ RLH++L PF+LRR
Sbjct: 790 HFLMPHVFQSHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRV 841
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 1270
DVE +P K V+RCR+S Q +YD A T +
Sbjct: 842 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK 879
Score = 297 (109.6 bits), Expect = 8.4e-74, Sum P(4) = 8.4e-74
Identities = 67/165 (40%), Positives = 103/165 (62%)
Query: 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1374
F DL + CGKL L +L +L+ GHRVL+F+ MT++LD+LE++L + +Y R+
Sbjct: 2032 FPDLR--LIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRL 2089
Query: 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434
DG+T +E R++ + FN+ D F F+LS R+ G G+NL ADTV+ YD D NP + QA
Sbjct: 2090 DGSTRVEQRQALMERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2148
Query: 1435 VARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLE 1477
R HRIGQ R+V + + E V++ + +K ++ R G + +E
Sbjct: 2149 QDRCHRIGQTRDVHIYRLISERTVEE-NILKKANQKRMLGDMAIE 2192
Score = 137 (53.3 bits), Expect = 4.8e-28, Sum P(4) = 4.8e-28
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 825 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 878
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
K + + ++ N M+LRK CNHP L P
Sbjct: 879 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 909
Score = 61 (26.5 bits), Expect = 8.4e-74, Sum P(4) = 8.4e-74
Identities = 26/109 (23%), Positives = 44/109 (40%)
Query: 554 QAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSD 613
Q SSS S+ ++ + +D+ + G SA + + + + QA D
Sbjct: 490 QEDSSSQSDSV-EDRSEDEEDEHSEEEETSGSSASEESESEESEDAQSQSQADEEEEDDD 548
Query: 614 QEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPK 662
VE L R ++QS+ A G + ++ A A +LQPK
Sbjct: 549 FGVEYLLARDEEQSEADAGSGPPTPGPTTLGPKKEITDIAAAAESLQPK 597
Score = 59 (25.8 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 42/181 (23%), Positives = 68/181 (37%)
Query: 278 PANASLIAQLIPIMQSRI--VANHKANESNMGAPS-----SPVPV-SKQQVTSPTIAGEN 329
PA ASL+A Q+ +A A ++ + APS +P+PV + +P +A
Sbjct: 1567 PAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLASSQ 1626
Query: 330 SPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXX------------XXXXXISLQQF 377
+P A A P +P+P+ + +S ++L
Sbjct: 1627 TPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLALAPA 1686
Query: 378 SVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQ-PLPVKNSS---GPENSQMQY 433
PS Q +++G G P P +L++TP P P + S GP Q
Sbjct: 1687 LAPTLGGSSPS-QTLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPGPPLGPTQT 1745
Query: 434 L 434
L
Sbjct: 1746 L 1746
Score = 54 (24.1 bits), Expect = 4.5e-73, Sum P(4) = 4.5e-73
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
+Q+Q+E A + Q K R+ ++ + +K ++ KQ + + RKK L+ H
Sbjct: 175 EQRQKEERARREEQ-AKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLH 232
Score = 53 (23.7 bits), Expect = 5.6e-18, Sum P(4) = 5.6e-18
Identities = 47/196 (23%), Positives = 66/196 (33%)
Query: 304 SNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSA 363
+N AP PVPV + P ++ + +P A VS SP G
Sbjct: 1013 NNPRAPLGPVPV--RPPPGPELSAQPTPGP--------VPQVLPASLMVSASPAGPPLIP 1062
Query: 364 AXXXXXXXI--SLQQFSVHGRDNQV-PSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPV 420
A + LQ S G QV PS V G PP P SL TP P PV
Sbjct: 1063 ASRPPGPVLLPPLQPNS--GSLPQVLPSPLGVLSGTSRPPT--PTLSLKPTP----PAPV 1114
Query: 421 KNSSGPENSQMQYLRQLN----RSSPQSAIPXXXXXXXXXXXXQGGLATQMPQQRLGFTK 476
+ S P L+ L + P +A T PQ+ +
Sbjct: 1115 RLSPAPPPGSSSLLKPLTVPPGYTFPPAAATTTSTTTATATTTAVPAPTPAPQRLILSPD 1174
Query: 477 HQLHVLKAQILAFRRL 492
Q + ++++ +L
Sbjct: 1175 MQARLPSGEVVSIGQL 1190
Score = 49 (22.3 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 38/182 (20%), Positives = 70/182 (38%)
Query: 275 LSQPANASLIAQLIPIM-QSRIVANHKANESNMGAPSS-PVPVSKQQVTSPTIAGENSPH 332
+SQPA+ +LI + P + + + S AP+ +P++ QV PT+ N+
Sbjct: 1251 ISQPAHVALIQAVAPTPGPTPVSVLPSSTPSTTPAPTGLSLPLAANQVP-PTMV--NNTG 1307
Query: 333 ANXXXXXXXXXXXAKARPTVSPSPLGSTTSA-AXXXXXXXISLQQFSVHGRDN-QVPSRQ 390
P ++P+P ++ A ++ + + P
Sbjct: 1308 VVKIVVRQAPRDGLTPVPPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTARAPMPT 1367
Query: 391 PVAIGNGLPPIHPPQTSLNMT-PG-----VDQPLPVKNS-SGPENSQMQYLRQLNRSSPQ 443
P + L +H P ++ + PG + PL V +S GP +S M +SP
Sbjct: 1368 PTLVRPLLKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPV 1427
Query: 444 SA 445
S+
Sbjct: 1428 SS 1429
Score = 46 (21.3 bits), Expect = 5.6e-18, Sum P(4) = 5.6e-18
Identities = 23/99 (23%), Positives = 33/99 (33%)
Query: 565 PKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSS-VKSDQEVECGL-LR 622
P E A AA + + + P P P +P++S V S V L
Sbjct: 1381 PSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLP 1440
Query: 623 TQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQP 661
+ PA + +SA V PA T+ P
Sbjct: 1441 ISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPP 1479
Score = 43 (20.2 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 577 AVSPVGQGMSAVTKEPAPVVVP 598
+ SP G + ++ P PV++P
Sbjct: 1052 SASPAGPPLIPASRPPGPVLLP 1073
Score = 39 (18.8 bits), Expect = 8.4e-74, Sum P(4) = 8.4e-74
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVS 316
+P++Q+++V++ + + SS P S
Sbjct: 12 LPVLQTQMVSDGMTGSNPVSPASSSSPAS 40
Score = 39 (18.8 bits), Expect = 1.7e-71, Sum P(4) = 1.7e-71
Identities = 16/93 (17%), Positives = 39/93 (41%)
Query: 546 LESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQA 605
LE +Q SS + + E A ++ V + SAVT+ P +++++
Sbjct: 344 LEGPSSPSQTPSSHDSDTRDGPEEGAEEEPPQVLEIKPPPSAVTQRNKQPWHPDEDDEEF 403
Query: 606 PVSSVKSDQEVECGLLRTQQQSDFPADRGKSVA 638
+ +++ E + + ++Q + D ++
Sbjct: 404 TANEEEAEDEEDT--IAAEEQLEGEVDHAMELS 434
Score = 38 (18.4 bits), Expect = 2.1e-71, Sum P(4) = 2.1e-71
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
+++ G AE Q R +E ++ + ++SLP + G + +P T+
Sbjct: 306 EEQQEGNDAEAQRREIELLRREGELPLEELLRSLPPQ-LLEGPSSPSQTPSSHDSD--TR 362
Query: 591 EPAPVVVPGKEEQQAPVSSVK 611
+ P G EE+ V +K
Sbjct: 363 D-GPE--EGAEEEPPQVLEIK 380
Score = 37 (18.1 bits), Expect = 9.2e-47, Sum P(4) = 9.2e-47
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVI 1450
DP P PK + V R + K+E + +
Sbjct: 982 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1009
Score = 37 (18.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 216 QKGEPKPPSQQT-LGG 230
+ G P PPS T GG
Sbjct: 1854 RSGPPSPPSTATSFGG 1869
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 438 (159.2 bits), Expect = 5.1e-73, Sum P(5) = 5.1e-73
Identities = 104/236 (44%), Positives = 147/236 (62%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA Q Y WI T +
Sbjct: 694 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFYKWI-LTRNFKA-------- 744
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYF--SDLSKDFL---VKSCGKLWIL 1333
+ K + + N MEL+K CNH L+ P +D ++ L V+ GKL +L
Sbjct: 745 LSKGTRGSSSGFL---NIVMELKKCCNHAFLIKQPEDGENDAPQEHLQSLVRGGGKLVLL 801
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL +YL ++ ++R+DG+ E R+ A+ FN+
Sbjct: 802 DKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAE 861
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 862 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 917
Score = 432 (157.1 bits), Expect = 5.1e-73, Sum P(5) = 5.1e-73
Identities = 98/280 (35%), Positives = 152/280 (54%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QPS + L RDYQ+ G+ W+ + + ILADEMGLGKT+Q ++ ++YL
Sbjct: 477 KQPSYIGDENLELRDYQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTISFLSYLFHQHQ 536
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-----FSQEVAALKFNV 1103
YGP +++VP + L +W+ E W P ++ + Y+G R + + + +KFN
Sbjct: 537 LYGPFIVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNA 596
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+TTYE ++ D+ L ++W ++ +DEA R+K+ +S+L + L +R RLL+TGTPLQN
Sbjct: 597 LLTTYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQN 656
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
+ F++ + F D + G D+ + LH++
Sbjct: 657 SLKELWSLLHFLMSDKFESWEDFED-------EHGK--GRDNGY----------QSLHKV 697
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
LEPF+LRR +DVE SLP KV +LR MSA Q Y WI
Sbjct: 698 LEPFLLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFYKWI 737
Score = 48 (22.0 bits), Expect = 5.1e-73, Sum P(5) = 5.1e-73
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 1742 QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQP 1801
QK + + P S S + + + V S + H+ SGS + D+ ED++ +P
Sbjct: 1064 QKQKEMEDIYMLPRSRSSNKKAQANDSDSDVG--SKLKHRSSGS-DSETDDSEDDK--RP 1118
Query: 1802 KIKRKRSIRVRPRHTVE 1818
K +R R R R ++ VE
Sbjct: 1119 K-RRGRP-RAR-KNNVE 1132
Score = 46 (21.3 bits), Expect = 5.1e-73, Sum P(5) = 5.1e-73
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 944 EEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNK 977
EE S++ EE +R+R L P+ SS +K
Sbjct: 164 EEETSSSESEQEEKKVRSRRLPARRPQTKSSASK 197
Score = 42 (19.8 bits), Expect = 7.6e-70, Sum P(7) = 7.6e-70
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 852 EFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
E SKRK + K+ K++D ++ E++TS E V S
Sbjct: 136 ESSKRKSSRQKKKENTWKDDDSNDEEDV--EEETSSSESEQEEKKVRS 181
Score = 39 (18.8 bits), Expect = 2.9e-70, Sum P(7) = 2.9e-70
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 1777 HMDHQQSGSWTHDRDEGEDEQVLQP 1801
H + G W DR G QP
Sbjct: 1618 HFPNDDRGDWQRDRKYGYPGNSNQP 1642
Score = 38 (18.4 bits), Expect = 2.9e-70, Sum P(7) = 2.9e-70
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 1614 SNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGE--YSEASSDE 1656
S + +G+ +KR P+ KK E+ +EI S+ S+E
Sbjct: 1330 SQDAIKAGDEPKIKKRKPRMKKKAPSNELVNEIASPRLSDNPSEE 1374
Score = 37 (18.1 bits), Expect = 5.1e-73, Sum P(5) = 5.1e-73
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 681 TRKHDSVGSTAMVNSSN------NLTLAYDVKDLLSEEGLEVLQKKRSEN 724
++K + GST SSN N + + SE+G E Q + SE+
Sbjct: 6 SKKQEDEGSTQSNASSNSASEESNRSGSESGSQSESEQGSEKAQSRHSES 55
Score = 37 (18.1 bits), Expect = 2.9e-70, Sum P(7) = 2.9e-70
Identities = 21/79 (26%), Positives = 34/79 (43%)
Query: 1473 TVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 1532
T D EDD K R G +NN++ + I A + + ER LE +
Sbjct: 1109 TDDSEDDKRPKRR--GRPRAR-KNNVEGFTDAEIRRFIKA--YKKFGAPLER---LEAIA 1160
Query: 1533 HDEERYQETVHDVPSLQEV 1551
D E ++++ D+ L E+
Sbjct: 1161 RDSELVEKSIADLKRLGEL 1179
Score = 37 (18.1 bits), Expect = 3.7e-70, Sum P(7) = 3.7e-70
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 1731 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGD 1775
+L++ + P+K L+ R L K + +LE + +GD
Sbjct: 1294 KLSEKILLDDPEKKPQGKQLQMRTDYLLKMLKKDLESQDAIKAGD 1338
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 571 (206.1 bits), Expect = 7.9e-73, Sum P(5) = 7.9e-73
Identities = 116/278 (41%), Positives = 169/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR G LR+YQ +GL W++++Y KLNGILADEMGLGKT+Q ++L+A+L KGN+GP
Sbjct: 618 PLLLR-GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 676
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ EL +W PS + Y GA+ +R F+V +T+Y+ ++
Sbjct: 677 HLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 736
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + +W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN
Sbjct: 737 QDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLM 796
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + + + E ++ RLH++L PF+LRR
Sbjct: 797 HFLMPHVFQSHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRV 848
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 1270
DVE +P K V+RCR+S Q +YD A T +
Sbjct: 849 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK 886
Score = 297 (109.6 bits), Expect = 7.9e-73, Sum P(5) = 7.9e-73
Identities = 67/165 (40%), Positives = 103/165 (62%)
Query: 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1374
F DL + CGKL L +L +L+ GHRVL+F+ MT++LD+LE++L + +Y R+
Sbjct: 2032 FPDLR--LIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRL 2089
Query: 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434
DG+T +E R++ + FN+ D F F+LS R+ G G+NL ADTV+ YD D NP + QA
Sbjct: 2090 DGSTRVEQRQALMERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2148
Query: 1435 VARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLE 1477
R HRIGQ R+V + + E V++ + +K ++ R G + +E
Sbjct: 2149 QDRCHRIGQTRDVHIYRLISERTVEE-NILKKANQKRMLGDMAIE 2192
Score = 137 (53.3 bits), Expect = 3.2e-27, Sum P(5) = 3.2e-27
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 832 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 885
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
K + + ++ N M+LRK CNHP L P
Sbjct: 886 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 916
Score = 79 (32.9 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 45/172 (26%), Positives = 70/172 (40%)
Query: 278 PANASLIAQLIPIMQSRI--VANHKANESNMGAPSS---PVPV-SKQQVTSPTIAGENSP 331
PA ASL+A Q+ +A A+ + + AP S P+PV + Q + P +A ++P
Sbjct: 1575 PAQASLLAPAPTASQALATSLAPMVASPTAILAPPSSLAPLPVLAPSQTSIPVLASSSTP 1634
Query: 332 HANXXXXXXXXXXXAKA-RP----TVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQV 386
A A P T+ P+P+ S + + S G +
Sbjct: 1635 GTPLASASSLVPAPAPALAPSSAQTMVPAPIPSPLPSPASTQTLALPSALASTLGGSS-- 1692
Query: 387 PSRQPVAIGNGLPPIHPPQTSLNMTPGVDQ-PLPVKNSS---GPENSQMQYL 434
PS Q +++G G P P +L++TP P P + S GP Q L
Sbjct: 1693 PS-QTLSLGTGSPQGPFPAQTLSLTPASSLVPAPAQTLSLAPGPPLGPSQTL 1743
Score = 63 (27.2 bits), Expect = 6.9e-19, Sum P(4) = 6.9e-19
Identities = 35/152 (23%), Positives = 55/152 (36%)
Query: 277 QPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXX 336
+P ++ L A L P + + + +G+ +P+P S + SP N
Sbjct: 1340 RPPSSGLPAVLTP---RPTLTPGRLSTPTLGSARAPIPTSTLVRPLLKLVHSPSPEVNAS 1396
Query: 337 XXXXXXXXXAKARPTVS--PSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAI 394
+ P S P P+ S SV V S P++I
Sbjct: 1397 APGAAPLAISSPLPVPSSLPGPVSSPMPVPNSSPLASPVSSAVSV-----PVSSSLPISI 1451
Query: 395 GNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGP 426
LP P S+ +T + PLPV ++SGP
Sbjct: 1452 STTLPA---P-ASVPLTIPISAPLPV-SASGP 1478
Score = 57 (25.1 bits), Expect = 7.9e-73, Sum P(5) = 7.9e-73
Identities = 27/140 (19%), Positives = 55/140 (39%)
Query: 535 SGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQ----GMSAVTK 590
SG E++ +E++ +++ ++ + P E++ + D A + T
Sbjct: 465 SGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSSQSDSAEEQSEDEEDEHSEEEETS 524
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQE-------VECGLLRTQQQSDFPADRGKSV-APQVS 642
+ EE + S ++D+E VE L R +++S+ G P +
Sbjct: 525 RSSESEESESEESEESQSQSQADEEEEDDDFGVEYLLARDEERSEADGGSGPPTPGPTTT 584
Query: 643 ACDAVQVKKPAQATTALQPK 662
++ A A +LQPK
Sbjct: 585 LGPKKEITDIAAAAESLQPK 604
Score = 55 (24.4 bits), Expect = 1.4e-17, Sum P(5) = 1.4e-17
Identities = 37/148 (25%), Positives = 51/148 (34%)
Query: 352 VSPSPLGSTTSAAXXXXXXXI--SLQQFSVHGRDNQV-PSRQPVAIGNGLPPIHPPQTSL 408
VSPSP G A + LQ S G QV PS V G PP P SL
Sbjct: 1059 VSPSPAGPPLIPASRPPGPVLLPPLQPNS--GPLPQVLPSPLGVLSGTSRPPA--PTLSL 1114
Query: 409 NMTPGVDQPLPVKNSSGPENSQMQYLRQLN----RSSPQSAIPXXXXXXXXXXXXQGGLA 464
P P PV+ S P L+ L + P +A+
Sbjct: 1115 KPAP----PAPVRLSPAPPPGSSSLLKPLTVPPGYTFPSAAVTTTSTTTATAPTTAVPAP 1170
Query: 465 TQMPQQRLGFTKHQLHVLKAQILAFRRL 492
T PQ+ + Q + ++++ +L
Sbjct: 1171 TPAPQRLILSPDMQARLPSGEVVSIGQL 1198
Score = 54 (24.1 bits), Expect = 1.6e-72, Sum P(5) = 1.6e-72
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
+Q+Q+E A + Q K R+ ++ + +K ++ KQ + + RKK L+ H
Sbjct: 175 EQRQKEERARREEQ-AKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLH 232
Score = 50 (22.7 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 579 SPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSV 610
SP G + ++ P PV++P + P+ V
Sbjct: 1062 SPAGPPLIPASRPPGPVLLPPLQPNSGPLPQV 1093
Score = 45 (20.9 bits), Expect = 7.9e-73, Sum P(5) = 7.9e-73
Identities = 24/103 (23%), Positives = 36/103 (34%)
Query: 1816 TVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQ---SEP 1872
+V PE T P S LP + A+ R + + G + + P
Sbjct: 2796 SVSGPESSPPTSGPCEAAPPSTLPTPTQQPFIARRRIELGVTGGGSPENGEGALLAITPP 2855
Query: 1873 SSKSRRNLPSRK----------IANAPKSRASLKTGRLNCMPG 1905
+ K RR P +K + AP S + KT + PG
Sbjct: 2856 AVKRRRGRPPKKNRSPADAGRGVDEAPSSTSKGKTNGADSGPG 2898
Score = 43 (20.2 bits), Expect = 1.4e-17, Sum P(5) = 1.4e-17
Identities = 23/95 (24%), Positives = 33/95 (34%)
Query: 565 PKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSS-VKSDQEVECGL-LR 622
P E A AA + + + P PV P +P++S V S V L
Sbjct: 1389 PSPEVNASAPGAAPLAISSPLPVPSSLPGPVSSPMPVPNSSPLASPVSSAVSVPVSSSLP 1448
Query: 623 TQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATT 657
+ PA + +SA V PA T+
Sbjct: 1449 ISISTTLPAPASVPLTIPISAPLPVSASGPALLTS 1483
Score = 40 (19.1 bits), Expect = 7.9e-73, Sum P(5) = 7.9e-73
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVS 316
+PI+Q+++V++ + + SS P S
Sbjct: 12 LPILQTQMVSDGMTGSNPVSPASSSSPAS 40
Score = 39 (18.8 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 25/96 (26%), Positives = 36/96 (37%)
Query: 585 MSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSV---AP-Q 640
+ +T PAPV VP PV++ Q + TQ + + G S AP
Sbjct: 1783 VQTLTLSPAPVSVPAI----GPVAT----QTLALAPASTQAPASQASSLGVSASGAAPLP 1834
Query: 641 VSACDAVQVKKPAQATTALQ---PKDVGAARKYHGP 673
V+ + V K T L+ P A + GP
Sbjct: 1835 VTMVSRLPVSKDEPETLTLRSGPPSPPSTATSFSGP 1870
Score = 37 (18.1 bits), Expect = 6.4e-46, Sum P(5) = 6.4e-46
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVI 1450
DP P PK + V R + K+E + +
Sbjct: 990 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1017
Score = 37 (18.1 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 586 SAVTKEPAPVVVPGKEEQQAP 606
S++ PAP + P + P
Sbjct: 1642 SSLVPAPAPALAPSSAQTMVP 1662
Score = 37 (18.1 bits), Expect = 8.2e-16, Sum P(5) = 8.2e-16
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 399 PPIHPPQTSLNMTPGVDQPLPVKNSSGP 426
PP+ P ++ +P +P GP
Sbjct: 1050 PPVLPAPLMVSPSPAGPPLIPASRPPGP 1077
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 477 (173.0 bits), Expect = 1.4e-72, Sum P(3) = 1.4e-72
Identities = 112/301 (37%), Positives = 164/301 (54%)
Query: 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
+QP + G +R YQ+ G++W+ L+ N +NGILADEMGLGKT+Q +A IA ++E K
Sbjct: 223 QQPQLFTGGVMRWYQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIAMMVE-KKVL 281
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKF-NVLVT 1106
GP L++ P + L NW SE ++ P VS + Y G + +R L Q +L+ V+VT
Sbjct: 282 GPFLVVAPLSTLPNWISEFKRFTPEVSVLLYHGPQKERLDLVKKIRQHQGSLRMCPVVVT 341
Query: 1107 TYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXX 1166
++E M DR L + W Y+I+DE R+K+ L ++L +LLLTGTPLQN+
Sbjct: 342 SFEIAMRDRKFLQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNNLS 401
Query: 1167 XXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNAD-DDWLETEKKVIIIHRLHQILE 1225
P+VFD+ K+F WF + T +D ++ + E++ I+H LH IL
Sbjct: 402 ELWSLLNFLLPDVFDDLKSFESWF------DISTITSDAENIVANEREQNILHMLHLILT 455
Query: 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI--KATGTLRVDPEDEKRRVQKN 1283
PF+LRR DV +PPK IV+ ++ Q A Y I K L +DE
Sbjct: 456 PFLLRRLKSDVTLEVPPKKEIVVYAPLTNKQEAFYMAIVNKTIAKLLGQEKDESAPAPLT 515
Query: 1284 P 1284
P
Sbjct: 516 P 516
Score = 353 (129.3 bits), Expect = 1.4e-72, Sum P(3) = 1.4e-72
Identities = 92/239 (38%), Positives = 137/239 (57%)
Query: 1284 PIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRIL 1337
P+ A+V L N M L++ CNH L+ YP + DF LV++ GK ILDR+L
Sbjct: 567 PV-DAQVNLKLQNILMLLKRCCNHAYLIEYP-LDPTTGDFKIDEQLVEASGKFLILDRML 624
Query: 1338 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDC 1397
+L++ GH+VL+FS MT +LDIL +Y R Y R+DG+ S DR+ + F+S D +
Sbjct: 625 PELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSS-DPEV 683
Query: 1398 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVD 1457
F+FLLS RA G G+NL SADTVII+D D NP+ + QA R HRIGQ + V V++ +
Sbjct: 684 FLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPV-VVHRLITAN 742
Query: 1458 KISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD 1516
I E R+ LE + K+++ GS + ++ + +D E++ + +D
Sbjct: 743 TIDEKILE---RASAKRKLEKMVIHKNKFKGS-KAELKQSKSCLDVDELVELLKSRDYD 797
Score = 43 (20.2 bits), Expect = 1.4e-72, Sum P(3) = 1.4e-72
Identities = 23/118 (19%), Positives = 48/118 (40%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEA 827
+++QQQQE +R +K L +Q+ + V+ +K + K K+ + +
Sbjct: 104 KMEQQQQEEKLKKERLEKKAAVL--KQKGSDKKTVKVERKKRGREDYKIADVMTKEEIMS 161
Query: 828 HWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
A + + K + + S D + + E L+ N ++ML ++T
Sbjct: 162 K-AKKPKMEEEAQASVKLEAEDIEKLSDTNSDIKGRLSETLRENS----KQMLDPERT 214
Score = 42 (19.8 bits), Expect = 1.8e-72, Sum P(3) = 1.8e-72
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTL--GG 230
E KQM P++ V+ G+P P Q L GG
Sbjct: 199 ETLRENSKQMLDPERTVN---GQPVPAQQPQLFTGG 231
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 535 (193.4 bits), Expect = 4.5e-72, Sum P(3) = 4.5e-72
Identities = 159/568 (27%), Positives = 283/568 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRV-ELMR-QVQTSQKAMREKQLKSISQWRK--KLL 825
D + + P+++ +K V ++Q + E+ R ++ K +++ Q + RK +L
Sbjct: 602 DTKANATASAPNKK-KKTVETLQQQVIKEIARKEIPRVYKIIQQNQYNRSTNARKTSQLC 660
Query: 826 --EAH-WAIRDARTARNRGVAKYHERILRE---FSKRKDD-DRNKRMEALKNNDVERYRE 878
EA W R + N+ + +R +RE F KR + +R+ R +A + ++R ++
Sbjct: 661 GREARRWQFRTIKN--NKDMQTKAKRAMRETMVFWKRNERVERDLRKKA-EREALDRAKK 717
Query: 879 MLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXXXXXRL 938
E++ ++ + L +TQTE Y + +G K+
Sbjct: 718 ---EEELR---ESRRQARKLDFLITQTELYSHFVGRKMDREQDLPSATNTASVSEI--NF 769
Query: 939 QGLSEEEVRSAAACAGEEVMIRNR----FLEMN---APRDGSS-VNK---YYSLAHAVNE 987
EE++R A + +E + + R + N +P + SS +N+ + VN
Sbjct: 770 DSDEEEDIRRLAVESAQEAVQKAREHSQLFDANRQQSPNNSSSDMNEGEMNFQNPTLVNA 829
Query: 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
++QP ML L++YQ+ GL W+ +LY +NGILADEMGLGKTVQ ++++AYL E
Sbjct: 830 FEVKQPKMLMC-KLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETH 888
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA-KDQR--SRLFSQEVAALK---- 1100
+GP L+I P + L NW+ E+ +++P + CI Y G+ KD++ + + ++
Sbjct: 889 NIWGPFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSP 948
Query: 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1160
F+V+VT+Y+ ++ D V W+Y+I+DEAQ +K S + L ++C+ RLLLTGTP
Sbjct: 949 FHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTP 1008
Query: 1161 LQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220
+QN P +FD+ F +WFS+ + +H + L ++ + RL
Sbjct: 1009 IQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIE----SHAQSNTQLNEQQ----LKRL 1060
Query: 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV 1280
H IL+PFMLRR ++V+ L K+ + C ++ Q +Y ++ ++ +
Sbjct: 1061 HMILKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIA-------ELL 1113
Query: 1281 QKNPIYQAKVYKTLNNRCMELRKTCNHP 1308
+K + ++ N M+ RK CNHP
Sbjct: 1114 EKAILGGDDTVASIMNLVMQFRKVCNHP 1141
Score = 311 (114.5 bits), Expect = 4.5e-72, Sum P(3) = 4.5e-72
Identities = 71/174 (40%), Positives = 107/174 (61%)
Query: 1322 FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
F+ S GKL LD++L++L+ HRVL++ MT+++D++EEYL +RQ Y R+DG++ +
Sbjct: 1424 FIADS-GKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKIS 1482
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
R + ++ + + F+FLLS RA G G+NL +ADTVI YD D NP + QA+ RAHRI
Sbjct: 1483 QRRDMVTEWQTRP-ELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRI 1541
Query: 1442 GQKREVKV---IYMEAVVDKISSHQKEDE-----LRSGGTV--DLEDDLAGKDR 1485
GQ+++V V I + ++I KE E + SGG + DL G R
Sbjct: 1542 GQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGGETRPTKQMDLKGNSR 1595
Score = 50 (22.7 bits), Expect = 7.7e-21, Sum P(3) = 7.7e-21
Identities = 21/106 (19%), Positives = 48/106 (45%)
Query: 809 MREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKD-------DDR 861
+R K+ +++ +++LL+ +I D R +Y++ E++ D +
Sbjct: 336 LRNKRDEAVHAEKRRLLDIRGSIHDRLVCRYEN--RYNKLHASEYNHHHDWAVRQAIREE 393
Query: 862 NKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
+EA K E ++ E+Q + ++A++ A ++ T T E
Sbjct: 394 VAAVEAAKIRADEEKKKKEREEQVRLLQESADKDAEMNEASTATSE 439
Score = 40 (19.1 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 12/66 (18%), Positives = 31/66 (46%)
Query: 1254 AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
A++ AI + + A ++ ++EK++ ++ Q ++ + ++ E+ + N
Sbjct: 385 AVRQAIREEVAAVEAAKIRADEEKKKKEREE--QVRLLQESADKDAEMNEASTATSENED 442
Query: 1314 YFSDLS 1319
DLS
Sbjct: 443 LKDDLS 448
Score = 39 (18.8 bits), Expect = 4.5e-72, Sum P(3) = 4.5e-72
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 274 DLSQPAN-ASLIAQLIPIMQSRIVANHKANESNMGAP 309
D +P N A ++ Q Q+RI N AN N P
Sbjct: 14 DSYKPPNGAEMMGQSELNTQNRIPYNTSANNRNWQIP 50
Score = 38 (18.4 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 682 RKHD--SVGSTAMVNSSN-NLTLAYDVKDLLSEEGLEVLQKKRSEN 724
R+ D S +TA V+ N + D++ L E E +QK R +
Sbjct: 751 REQDLPSATNTASVSEINFDSDEEEDIRRLAVESAQEAVQKAREHS 796
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 780 (279.6 bits), Expect = 7.7e-72, Sum P(2) = 7.7e-72
Identities = 237/728 (32%), Positives = 372/728 (51%)
Query: 970 RDGSSVNKYYSLAHAVN----ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILA 1025
R+ S + YS + E++ QP ++ G LRD+Q+ G+ WM L++ NGILA
Sbjct: 341 RENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILA 400
Query: 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAK 1085
DEMGLGKTVQ +A I++L+ + GPH+I+VP + + W KW P ++CI Y+G +
Sbjct: 401 DEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQ 460
Query: 1086 DQRSRLFSQEV---------AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1136
R + E +KFNVL+TTYE+I+ DR++L + W+++ +DEA R+K+
Sbjct: 461 KSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKN 520
Query: 1137 RESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQK 1196
ES L L+ ++ R+L+TGTPLQN+ P F +
Sbjct: 521 AESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFT------------IDQ 568
Query: 1197 EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ 1256
E N D+ E E+ IH LH+ ++PF+LRR +DVE SLP K +LR +S +Q
Sbjct: 569 EIDFENQDE---EQEE---YIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQ 622
Query: 1257 SAIYDWI--KATGTLRVDPEDEKRRVQK--NPIYQAKVYKTLNNRCME--LRKTCNHPLL 1310
+ Y I K L + + N + +A + L + E L+K + +
Sbjct: 623 TEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMT 682
Query: 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
++ + L+ S GK+ +LD++L +L++ GHRVL+FS M ++LDIL +YL + +
Sbjct: 683 R----ENVLRG-LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGIN 737
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
++R+DGT R +I FNS DS+ F+FLLS RA G G+NL +ADTV+I+D D NP+
Sbjct: 738 FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQA 797
Query: 1431 EEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQK-----EDELRSGGTVDLEDDLAG 1482
+ QA+ARAHRIGQK V V + + V +++ + E + S G D
Sbjct: 798 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKK 857
Query: 1483 KDRYIGSIEGLIR---NNI-----QQYKI-DM-ADEVINAGRFDQRTTHE--ERRMTLET 1530
+ G + +++ N+ Q K+ D+ D+V+N D TT + E + E
Sbjct: 858 NEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAE-DHVTTPDLGESHLGGEE 916
Query: 1531 LLHDEE--RYQETVH--DVPSLQEVNRMIARSEDEVELFDQMDEEF--GWIEEMTRYDQV 1584
L E Y+ + D+ +E+ ++ +DE + + DEE+ +E M R D
Sbjct: 917 FLKQFEVTDYKADIDWDDIIPEEELKKL----QDEEQ--KRKDEEYVKEQLEMMNRRDNA 970
Query: 1585 PKWLRASTKEVNATIANL-----SKKPSKNILFGSNIGVDS-GEIETERKRGPKGKKYPN 1638
K ++ S + T AN S S +N +DS GE E R K+ N
Sbjct: 971 LKKIKNSVNG-DGTAANSDSDDDSTSRSSRRRARAN-DMDSIGESEV-RALYKAILKFGN 1027
Query: 1639 YKEVDDEI 1646
KE+ DE+
Sbjct: 1028 LKEILDEL 1035
Score = 39 (18.8 bits), Expect = 7.7e-72, Sum P(2) = 7.7e-72
Identities = 22/120 (18%), Positives = 47/120 (39%)
Query: 1783 SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQM 1842
+G T + +D+ + R+R+ R ++ E R+ L G+ + ++
Sbjct: 979 NGDGTAANSDSDDDST--SRSSRRRA-RANDMDSIGESEVRALYKAILKFGNLKEILDEL 1035
Query: 1843 --DNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRL 1900
D P + + + + E D K+R+ + + +A RA LK+G +
Sbjct: 1036 IADGTLPVK-SFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLEKHATAYRAKLKSGEI 1094
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 538 (194.4 bits), Expect = 9.4e-72, Sum P(4) = 9.4e-72
Identities = 116/278 (41%), Positives = 167/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +L+ +LR+YQ +GL W++++Y KLNGILADEMGLGKT+ +AL+A+L KG +GP
Sbjct: 529 PFLLKH-SLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGP 587
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK-FNVLVTTYEFI 1111
HLI+VP +V++NW++E KW P+ + Y G+ +R +L Q L F+V +TTY +
Sbjct: 588 HLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKER-KLKRQGWMKLNSFHVCITTYRLV 646
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXX 1171
+ D + WKY+I+DEA +K+ +S + L + +RR+LLTGTPLQND
Sbjct: 647 IQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSL 706
Query: 1172 XXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
P VF + + F DWF P G + + K+VI RLH +L PF+LRR
Sbjct: 707 MHFLMPHVFQSHQEFKDWFCNPIA--GMVEGQE----KINKEVI--DRLHNVLRPFLLRR 758
Query: 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGT 1268
DVE LP K V+ CR+S Q +Y D+I +T T
Sbjct: 759 LKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTET 796
Score = 297 (109.6 bits), Expect = 9.4e-72, Sum P(4) = 9.4e-72
Identities = 69/178 (38%), Positives = 104/178 (58%)
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR 1342
+P Y+ KV L+ +R + YF D + + CGKL L +L KL+
Sbjct: 1035 SPSYKEKVTDLLSPLLSPIRPAI---VRRQVYFPD--RRLIQFDCGKLQELAMLLRKLKF 1089
Query: 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402
GHR L+F+ MTK+LD+LE ++ Y R+DG+T E+R++ + FN++ F+F+L
Sbjct: 1090 GGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPK-IFLFIL 1148
Query: 1403 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IYMEAVVDK 1458
S R+ G G+NL ADTVI YD D NP ++QA R HRIGQ REV + + E+ +++
Sbjct: 1149 STRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEE 1206
Score = 123 (48.4 bits), Expect = 6.3e-28, Sum P(4) = 6.3e-28
Identities = 36/104 (34%), Positives = 54/104 (51%)
Query: 1208 LETEKKVI--IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIK 1264
+E ++K+ +I RLH +L PF+LRR DVE LP K V+ CR+S Q +Y D+I
Sbjct: 733 VEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIA 792
Query: 1265 ATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308
+T T + + + ++ M+LRK CNHP
Sbjct: 793 STET-------------QATLTSGSFFGMISI-IMQLRKVCNHP 822
Score = 53 (23.7 bits), Expect = 9.4e-72, Sum P(4) = 9.4e-72
Identities = 26/101 (25%), Positives = 41/101 (40%)
Query: 538 IAEDQLRHLESNGKDAQAVSSSNVQSLPKEEA---Y-AGDDKAAVSPVGQGMSAVTKEPA 593
I ED+ +H + + + N LP EE Y +G SPV +
Sbjct: 228 IEEDE-KHFTKRERQEELEALQNEVDLPVEELLRRYTSGRVSRETSPVKDENEDNLTSVS 286
Query: 594 PVVVPGKEEQQAPVSSVKSDQ-EVECGLLRTQQQSDFPADR 633
V P K+E Q ++SV D E + L +++ P+ R
Sbjct: 287 RVTSPVKDENQDNLASVGQDHGEDKNNLAASEETEGNPSVR 327
Score = 52 (23.4 bits), Expect = 1.2e-71, Sum P(4) = 1.2e-71
Identities = 24/106 (22%), Positives = 46/106 (43%)
Query: 820 WRKKLLEAH--WAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALK-NNDVERY 876
W K E+ W + A+ R ++ RE K K++++ R AL + D++++
Sbjct: 57 WLSKDFESERKWKLAQAKKVALRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKF 116
Query: 877 R---EMLLEQQTSIPGDAAERYAV---LSSFLTQTEEYLYKLGSKI 916
E L+ + + + ++ A+ L L QTE Y L +
Sbjct: 117 WMKVEKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAENL 162
Score = 51 (23.0 bits), Expect = 9.4e-72, Sum P(4) = 9.4e-72
Identities = 33/172 (19%), Positives = 65/172 (37%)
Query: 1496 NNIQQYK------IDMADEVINAGRFDQRTTHEERRMTLETLLHDE--ERYQETVHDVPS 1547
++I++YK ID +E + ++D E R +E L + E + + +
Sbjct: 1427 DHIEKYKEEMEAEIDDGEEPLVYEKWDADFATEAYRQQVEVLAQHQLMEDLENEAREREA 1486
Query: 1548 LQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKW-LRASTKEVNATIANLSKKP 1606
EV M+ + + ++ + +Y + K L A +K V + +
Sbjct: 1487 A-EVAEMVLTQNESAHVLKPKKKKKA---KKAKYKSLKKGSLAAESKHVKSVVKIEDSTD 1542
Query: 1607 SKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1658
N FG DS + + KGKK + D+E +A +++
Sbjct: 1543 DDNEEFGYVSSSDSDMVTPLSRMHMKGKKRDLIVDTDEEKTSKKKAKKHKKS 1594
Score = 39 (18.8 bits), Expect = 1.7e-70, Sum P(4) = 1.7e-70
Identities = 28/147 (19%), Positives = 61/147 (41%)
Query: 1757 LSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRH- 1815
L + + +E E E A + + +S + + + ++ +K K S+ +H
Sbjct: 1473 LMEDLENEAREREAAEVAEMVLTQNESAHVLKPKKKKKAKKAKYKSLK-KGSLAAESKHV 1531
Query: 1816 -TVERPEERSCTDTP----LHRGDSSLL-PF-QMDNKYPAQ-LRTDTEMKAHGESNSLRH 1867
+V + E+ + D + DS ++ P +M K + L DT+ + + + +H
Sbjct: 1532 KSVVKIEDSTDDDNEEFGYVSSSDSDMVTPLSRMHMKGKKRDLIVDTDEEKTSKKKAKKH 1591
Query: 1868 DQSEPSSKSRRNLPSRKIANAPKSRAS 1894
+S P+S + S + S+ S
Sbjct: 1592 KKSLPNSDIKYKQTSALLDELEPSKPS 1618
Score = 39 (18.8 bits), Expect = 2.7e-70, Sum P(4) = 2.7e-70
Identities = 10/69 (14%), Positives = 27/69 (39%)
Query: 105 QQHAISQESQNRSQGVEHQLLNPVHXXXXXXXXXXXXKSASVLQSQQQAKLGMLGPASGK 164
++H +E Q + +++++ PV + S ++ + + L + +
Sbjct: 232 EKHFTKRERQEELEALQNEVDLPVEELLRRYTSGRVSRETSPVKDENEDNLTSVSRVTSP 291
Query: 165 DQDMRMGNL 173
+D NL
Sbjct: 292 VKDENQDNL 300
Score = 37 (18.1 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 1207 WLETEKKVIIIHRL 1220
W++ EK V+ H+L
Sbjct: 117 WMKVEKLVLYKHQL 130
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 506 (183.2 bits), Expect = 6.7e-71, Sum P(4) = 6.7e-71
Identities = 110/299 (36%), Positives = 171/299 (57%)
Query: 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
+QP+ + G +R YQ+ GL+W+ SL+ N L GILADEMGLGKTVQ ++LIA+ E +
Sbjct: 192 QQPAPVTGGKMRKYQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIAFFKEHNVS- 250
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL---FS--QEVAALKFNVLV 1105
GP LI P + + NW E +W P + + Y G +D+R++L F ++ + F V+
Sbjct: 251 GPFLISAPLSTVSNWVDEFARWTPGIKTVLYHGTRDERAQLRKKFMNLRDQKSPDFPVVC 310
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDX 1165
T+YE M DR L++ W+YII+DE R+K+ L ++L Y RLL+TGTPLQN+
Sbjct: 311 TSYEICMNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNI 370
Query: 1166 XXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225
PE+F++ +F +WF F +N D +E K+ ++ +H IL+
Sbjct: 371 TELWSLLHFLLPEIFNDLNSFQNWFD--FSSV-LDNNGQTDMIERRKRTLV-STMHSILK 426
Query: 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQKN 1283
PF+LRR DVE +LP K +L ++ Q +Y + + TG ++ + +R + KN
Sbjct: 427 PFLLRRVKTDVESALPKKREYILYAPLTLEQKDLYREILNGTGRQYLEEKATERLMAKN 485
Score = 311 (114.5 bits), Expect = 6.7e-71, Sum P(4) = 6.7e-71
Identities = 87/245 (35%), Positives = 134/245 (54%)
Query: 1274 EDEKRRVQK-NPIYQAK---VYKTLNNRCMELRKTCNHPLLNY-PYFSDLSK--DFLVKS 1326
E E+ +++ N I AK K + N M+ R CN P Y P+ D S + LV +
Sbjct: 565 ESEQEEIERANTIKLAKREIAQKKMQNPVMQARLACNSPHNFYWPWAEDPSSIDETLVTA 624
Query: 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSLEDRES 1385
GK+ +LDR++ L GH++L+FS LDIL+++ R RIDG S DR++
Sbjct: 625 SGKMLLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQA 684
Query: 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445
I FN+ D D IFLLS RA G+G+NL +ADTVI++D D NP+ + QA RAHRIGQ +
Sbjct: 685 QIKAFNT-DKDYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTK 743
Query: 1446 EVKVIYMEAVVDKISSH--QKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKI 1503
V ++Y A + +K D R + ++ GK + + S + R+++ + K
Sbjct: 744 PV-IVYRLATKGTVEQTLLEKADSKRRLERLVIQK---GKFKSLLSESTMSRDDVDELKR 799
Query: 1504 DMADE 1508
+ ++
Sbjct: 800 ALGED 804
Score = 43 (20.2 bits), Expect = 6.7e-71, Sum P(4) = 6.7e-71
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQ 245
+KQ +Q ++Q +D E + S Q +G A+ R AA+
Sbjct: 76 KKQEQQQKEQQADTSEESRKASAQPTERRGTRAST-RQAAAAE 117
Score = 39 (18.8 bits), Expect = 6.7e-71, Sum P(4) = 6.7e-71
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 570 YAGDD-KAAVSPVGQGMSAVTKEPAPV 595
+A D+ +A + +G+ T++PAPV
Sbjct: 171 HAADEFEAKPTVLGEQELVATQQPAPV 197
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 571 (206.1 bits), Expect = 8.0e-71, Sum P(6) = 8.0e-71
Identities = 116/278 (41%), Positives = 169/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR G LR+YQ +GL W++++Y KLNGILADEMGLGKT+Q ++L+A+L KGN+GP
Sbjct: 621 PLLLR-GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 679
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ EL +W PS + Y GA+ +R F+V +T+Y+ ++
Sbjct: 680 HLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 739
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + +W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN
Sbjct: 740 QDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLM 799
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + + + E ++ RLH++L PF+LRR
Sbjct: 800 HFLMPHVFQSHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRV 851
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 1270
DVE +P K V+RCR+S Q +YD A T +
Sbjct: 852 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK 889
Score = 288 (106.4 bits), Expect = 8.0e-71, Sum P(6) = 8.0e-71
Identities = 67/166 (40%), Positives = 103/166 (62%)
Query: 1315 FSDLSKDFLVKSC-GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373
F DL + C GKL L +L +L+ GHRVL+F+ MT++LD+LE++L + +Y R
Sbjct: 2019 FPDLR--LIQYDCAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLR 2076
Query: 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1433
+DG+T +E R++ + FN+ D F F+LS R+ G G+NL ADTV+ YD D NP + Q
Sbjct: 2077 LDGSTRVEQRQALMERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQ 2135
Query: 1434 AVARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLE 1477
A R HRIGQ R+V + + E V++ + +K ++ R G + +E
Sbjct: 2136 AQDRCHRIGQTRDVHIYRLISERTVEE-NILKKANQKRMLGDMAIE 2180
Score = 137 (53.3 bits), Expect = 1.9e-25, Sum P(6) = 1.9e-25
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 835 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 888
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
K + + ++ N M+LRK CNHP L P
Sbjct: 889 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 919
Score = 69 (29.3 bits), Expect = 1.1e-17, Sum P(5) = 1.1e-17
Identities = 35/122 (28%), Positives = 44/122 (36%)
Query: 308 APSSPV-PVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXX 366
APSSPV P +T A S PT+ PS + T A
Sbjct: 1741 APSSPVGPAPAHTLTLAPAASSASLLVPTSVQTLTLSPAPVPVPTLDPS--ATQTLALAP 1798
Query: 367 XXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLP-PIHPPQTSLNMTPGVDQPLPVKNS-S 424
+ Q S+ + PV + N LP P P+T L + G PLP S S
Sbjct: 1799 ALTQAPASQASSLVSASGA--ASLPVTMVNRLPVPKDEPET-LTLRSGPPSPLPTATSFS 1855
Query: 425 GP 426
GP
Sbjct: 1856 GP 1857
Score = 57 (25.1 bits), Expect = 8.0e-71, Sum P(6) = 8.0e-71
Identities = 26/117 (22%), Positives = 45/117 (38%)
Query: 547 ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAP 606
E+ +D+ + S S + EE +++ + S + + E A EEQ+
Sbjct: 491 EAAQEDSSSQSDSAEEHSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQEDE 550
Query: 607 VSSVKSDQEVECGLLRTQQQSDFPADRGKSV-APQVSACDAVQVKKPAQATTALQPK 662
D VE L R ++S+ G P + ++ A A +LQPK
Sbjct: 551 GDDDDDDFGVEYLLARDDERSEVDGGSGPPTPGPTTTLGPKKEITDIAAAAESLQPK 607
Score = 54 (24.1 bits), Expect = 1.6e-70, Sum P(6) = 1.6e-70
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
+Q+Q+E A + Q K R+ ++ + +K ++ KQ + + RKK L+ H
Sbjct: 175 EQRQKEERARREEQ-AKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLH 232
Score = 52 (23.4 bits), Expect = 4.3e-15, Sum P(6) = 4.3e-15
Identities = 36/146 (24%), Positives = 48/146 (32%)
Query: 352 VSPSPLGS-TTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNM 410
VS SP G+ A+ +S Q + +PS V G PP P SL
Sbjct: 1061 VSASPAGTPVVPASRPPGPVLLSPLQPNTGPLPQVLPSPMGVMSGTSRPPT--PTLSLKP 1118
Query: 411 TPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIPXXXXXXXXXXXXQGGLATQMPQQ 470
P P PV+ S P L+ L + P A P
Sbjct: 1119 AP----PAPVRLSPAPPPGSSSLLKPLTVPPGYTLSPVAATTTSSTIATVTTTAVPAPNS 1174
Query: 471 RLGFTKHQLHVLKAQILAFRRLKKGE 496
T +L +L ++ A RL GE
Sbjct: 1175 ----TPQRL-ILSPEMQA--RLPSGE 1193
Score = 45 (20.9 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 535 SGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKA 576
SG +ED+ +E+N D + + +V+ +E++ + D A
Sbjct: 465 SGN-SEDE-EEVEANSSDCELEETRDVEEAAQEDSSSQSDSA 504
Score = 43 (20.2 bits), Expect = 8.0e-71, Sum P(6) = 8.0e-71
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 1588 LRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIG 1647
+RA+T+ +A L++ F N G +GE E + GP G + + EI
Sbjct: 2242 IRAATQAKAEQVAELAE-------FNENEGFPAGEGEEASRPGP-GAEDEEMSRAEQEIA 2293
Query: 1648 EYSE 1651
E
Sbjct: 2294 ALVE 2297
Score = 42 (19.8 bits), Expect = 1.0e-70, Sum P(6) = 1.0e-70
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1750 LEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 1781
LE PGS +P+E EE +A S +H+ Q
Sbjct: 2202 LEEPPGSSVSSVPEE-EEETVA-SKQTHILEQ 2231
Score = 42 (19.8 bits), Expect = 4.0e-14, Sum P(6) = 4.0e-14
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 388 SRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGP 426
S QP +G +PP+ P ++ +P +P GP
Sbjct: 1043 STQPT-LGP-VPPVLPTPLMVSASPAGTPVVPASRPPGP 1079
Score = 42 (19.8 bits), Expect = 1.6e-13, Sum P(7) = 1.6e-13
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 387 PSRQPVAIGNGLPP-IHPPQTS 407
PS +A+G P + PPQTS
Sbjct: 1502 PSVSALALGLATTPALSPPQTS 1523
Score = 41 (19.5 bits), Expect = 8.0e-71, Sum P(6) = 8.0e-71
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 1864 SLRHDQSEPSSKSRRNLPS-RKIANAPKSRASLKTGRLNCMPG 1905
+++ + P K+R + R + AP S + KT ++ +PG
Sbjct: 2815 AVKRRRGRPPKKNRSPADAGRGVDEAPSSISKGKTNGVDPIPG 2857
Score = 41 (19.5 bits), Expect = 8.4e-15, Sum P(6) = 8.4e-15
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 577 AVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSV 610
+ SP G + ++ P PV++ + P+ V
Sbjct: 1062 SASPAGTPVVPASRPPGPVLLSPLQPNTGPLPQV 1095
Score = 40 (19.1 bits), Expect = 8.0e-71, Sum P(6) = 8.0e-71
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVS 316
+PI+Q+++V++ + + SS P S
Sbjct: 12 LPILQTQMVSDGMTGSNPVSPASSSSPAS 40
Score = 40 (19.1 bits), Expect = 1.5e-14, Sum P(5) = 1.5e-14
Identities = 15/66 (22%), Positives = 25/66 (37%)
Query: 297 ANHKANESNMGAPS-SPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPS 355
++H ++ AP+ SPV V +TSP +S A +++P
Sbjct: 1533 SSHVPGLNSAVAPACSPVLVPASALTSPFPISPSSAPAQASLLAPAPSTSQALATSLAPM 1592
Query: 356 PLGSTT 361
TT
Sbjct: 1593 AASQTT 1598
Score = 38 (18.4 bits), Expect = 3.1e-45, Sum P(5) = 3.1e-45
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1872 PSSKSRRNLPSRKIANAPKS 1891
P S S LPS + +AP S
Sbjct: 1626 PPSMSGAPLPSSTLVSAPTS 1645
Score = 38 (18.4 bits), Expect = 1.6e-13, Sum P(7) = 1.6e-13
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 349 RPTVSPSPLGSTT 361
RPT++PS L S T
Sbjct: 1357 RPTLTPSRLTSPT 1369
Score = 37 (18.1 bits), Expect = 2.1e-70, Sum P(6) = 2.1e-70
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 1783 SGSWTHDRDEGEDEQVLQPKIKRKR 1807
+G + + EG + P +KR+R
Sbjct: 2796 TGGGSPENGEGAKLAITPPAVKRRR 2820
Score = 37 (18.1 bits), Expect = 9.3e-69, Sum P(6) = 9.3e-69
Identities = 22/98 (22%), Positives = 36/98 (36%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
Q R+ K + HL+ + S QSL + A KA SP SA +
Sbjct: 218 QSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPLA---SSKAGSSPCLGSSSAASS 274
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSD 628
P PV E + ++E + + ++Q +
Sbjct: 275 PPPPVSRLDDEAIDGDFQPQEEEEEDDEETIEVEEQQE 312
Score = 37 (18.1 bits), Expect = 3.1e-45, Sum P(5) = 3.1e-45
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVI 1450
DP P PK + V R + K+E + +
Sbjct: 992 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1019
Score = 37 (18.1 bits), Expect = 4.3e-15, Sum P(6) = 4.3e-15
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 581 VGQGMSAVTKEPAPVVVP 598
V + +T PAPV VP
Sbjct: 1767 VPTSVQTLTLSPAPVPVP 1784
Score = 37 (18.1 bits), Expect = 4.9e-13, Sum P(7) = 4.9e-13
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 381 GRDNQVPSRQPVAIGNGLP-PIHPPQTSLNMTPGVDQPLPVKNSSGP 426
G+D SR+ +++ LP P P T P + PLPV + GP
Sbjct: 1435 GQDRSSRSRK-ISVPTTLPVPASAPLT----IP-ITAPLPVSDL-GP 1474
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 429 (156.1 bits), Expect = 8.9e-71, Sum P(2) = 8.9e-71
Identities = 147/476 (30%), Positives = 232/476 (48%)
Query: 1202 NADDDW-LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
N D D L +E + L + + PFMLRR VE LPPK ++R +S +Q Y
Sbjct: 632 NVDADMDLNSEAASEKLAELTKAISPFMLRRTKTKVESDLPPKTEKIIRVELSDVQLEYY 691
Query: 1261 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF----- 1315
K T +E + QK ++L N MEL+K NHP + +P
Sbjct: 692 ---KNILTKNYAALNEGTKGQK---------QSLLNIMMELKKASNHPFM-FPSAETKIL 738
Query: 1316 --SDLSKDFL---VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
S +D L + S GK+ +LD++L KL+R GHRVL+FS M K+LDIL +Y+++R
Sbjct: 739 EGSTRREDVLRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYT 798
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y+R+DGT R AI +N+ DS F F+LS RA G G+NL +ADTVI++D D NP+
Sbjct: 799 YQRLDGTIPSASRRLAIEHYNAPDSSDFAFILSTRAGGLGINLMTADTVILFDSDWNPQA 858
Query: 1431 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG-KDRYIGS 1489
+ QA+ARAHRIGQ + V V Y D + E R+ ++ G D+
Sbjct: 859 DLQAMARAHRIGQTKPVSV-YRLVSKDTVEEEVIE-RARNKLLLEFITIQRGVTDKEASE 916
Query: 1490 IEG-LIRNNIQQYKIDMADEVINA-GRFDQRTTHEE-RRMTLETLLHDEERYQETVHDVP 1546
I+ + R I + + D++ R QR + + LE L D +H
Sbjct: 917 IQNKMARGGITLGEPNSTDDISRILKRRGQRMFEQTGNQAKLEQLDIDSVLANAELHQTE 976
Query: 1547 SLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKW----LRASTKEV--NATIA 1600
+ + E+ ++ FD +D + ++++T D +PK ++A K+ +A
Sbjct: 977 QAEGIQA--DGGEEFLKAFDYVDIK---VDDLTWDDIIPKEQLEEIKAEEKKKADEKYLA 1031
Query: 1601 NL--SKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASS 1654
++ +P K I+ G D + ERK + + + ++D+ G+ SE ++
Sbjct: 1032 DVIEQNRPRKRIVAG-----DERDTRAERKAKRQARVQVS---MNDDDGDDSEPNA 1079
Score = 391 (142.7 bits), Expect = 8.9e-71, Sum P(2) = 8.9e-71
Identities = 101/307 (32%), Positives = 161/307 (52%)
Query: 961 NRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKL 1020
+RFL+ ++ S + + + E + PS L G L+++Q+ G+ +M +
Sbjct: 406 DRFLDRSSRPPVSDKKESHPSSRKPFEPIKGTPSFLHNGQLKEFQVKGVNFMAFNWVKNR 465
Query: 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIY 1080
N +LADEMGLGKTVQ +A I++L + GP +++VP + + +W W P ++ +
Sbjct: 466 NVVLADEMGLGKTVQTVAFISWLRHVRRQQGPFVVVVPLSTMPSWAETFDNWSPDLNYVV 525
Query: 1081 YVGAKDQRSRLFSQEVAA------LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1134
Y G + R+ L E+ KFNVL+TTYE+++ D S LS+ +W+++ +DEA R+
Sbjct: 526 YNGNEASRNVLKEYELMVDGNPRRPKFNVLLTTYEYVLVDSSFLSQFNWQFMAVDEAHRL 585
Query: 1135 KDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPF 1194
K+R+S L L + RLL+TGTP+QN+ E+ A D F P
Sbjct: 586 KNRDSQLYIKLQEFNSPARLLITGTPIQNNLA-----------EL----SALLD-FLNP- 628
Query: 1195 QKEGPTH-NADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMS 1253
G + +AD D L +E + L + + PFMLRR VE LPPK ++R +S
Sbjct: 629 ---GLVNVDADMD-LNSEAASEKLAELTKAISPFMLRRTKTKVESDLPPKTEKIIRVELS 684
Query: 1254 AIQSAIY 1260
+Q Y
Sbjct: 685 DVQLEYY 691
Score = 54 (24.1 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 1504 DMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1563
D +EVI R +R + E E +E V + +L+ +++ + E +
Sbjct: 1107 DREEEVIREARLTERDRDTVKSALREITDKAAELVREDVARLEALENAGKVLTKKERKAV 1166
Query: 1564 LFD 1566
LFD
Sbjct: 1167 LFD 1169
Score = 39 (18.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 1431 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR--YIG 1488
EE+ + A + R+ + + DK + +ED R + L K+R +
Sbjct: 1109 EEEVIREARLTERDRDTVKSALREITDKAAELVREDVARLEALENAGKVLTKKERKAVLF 1168
Query: 1489 SIEGLIRNN 1497
+ G+ R N
Sbjct: 1169 DLHGVKRLN 1177
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 521 (188.5 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 109/281 (38%), Positives = 171/281 (60%)
Query: 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
+QP ++ G L+DYQ+ GL+W+++L+ N LNGILADEMGLGKT+Q ++ +++L+E G
Sbjct: 165 KQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIE-NGIN 223
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSR--LFSQEVAALKFNVLVTTY 1108
GP L++VP + L NW +E+ K+ P + Y+G K +R+ L Q+ N+++T+Y
Sbjct: 224 GPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQERNDIDLLQQQETT---NIILTSY 280
Query: 1109 EFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX 1168
E + D +KL K++WKY+I+DE R+K+ + +L + L + RLLLTGTPLQN+
Sbjct: 281 EISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNEL 340
Query: 1169 XXXXXXXXPEVFDNRKAFHDWFS--QPFQKEGP---THNADDDWLETEKKVII----IHR 1219
P++F + + F WF+ + + G T+N +D+ + K+ I I
Sbjct: 341 WSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKN 400
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
LH IL+PFMLRR DV +LPPK +L M+ +Q IY
Sbjct: 401 LHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIY 441
Score = 292 (107.8 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 69/184 (37%), Positives = 113/184 (61%)
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK 1339
+ ++ + +AK K N + ++LR CN P + Y Y L + ++++ K +L+++L
Sbjct: 564 IYQDILKEAKHLKLQNLKMIQLRNICNSPFIYYNY-PILDQAEVIRNSAKFQVLNQLLPP 622
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR---RIDGTTSLEDRESAIVDFNSHDSD 1396
L +GH+VL+F+ TK+LD+LE++L+ L + R+DG+T+ + R+ I FN++
Sbjct: 623 LLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPK- 681
Query: 1397 CF-IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAV 1455
F +FL S RA G G+NL +ADTVI+ D D NP+ + QA+ R HRIGQ VK I+ +
Sbjct: 682 -FKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVK-IFRFVI 739
Query: 1456 VDKI 1459
D I
Sbjct: 740 KDSI 743
Score = 38 (18.4 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 281 ASLIAQLIP--IMQSRIVANHKANESNMGAPSSPVP 314
+ + +Q+I I+Q+ + + E N AP +PVP
Sbjct: 67 SQIYSQIIADNILQTSL---ERKEEQNNVAPPAPVP 99
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 521 (188.5 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 109/281 (38%), Positives = 171/281 (60%)
Query: 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
+QP ++ G L+DYQ+ GL+W+++L+ N LNGILADEMGLGKT+Q ++ +++L+E G
Sbjct: 165 KQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIE-NGIN 223
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSR--LFSQEVAALKFNVLVTTY 1108
GP L++VP + L NW +E+ K+ P + Y+G K +R+ L Q+ N+++T+Y
Sbjct: 224 GPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQERNDIDLLQQQETT---NIILTSY 280
Query: 1109 EFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX 1168
E + D +KL K++WKY+I+DE R+K+ + +L + L + RLLLTGTPLQN+
Sbjct: 281 EISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNEL 340
Query: 1169 XXXXXXXXPEVFDNRKAFHDWFS--QPFQKEGP---THNADDDWLETEKKVII----IHR 1219
P++F + + F WF+ + + G T+N +D+ + K+ I I
Sbjct: 341 WSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKN 400
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
LH IL+PFMLRR DV +LPPK +L M+ +Q IY
Sbjct: 401 LHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIY 441
Score = 292 (107.8 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 69/184 (37%), Positives = 113/184 (61%)
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK 1339
+ ++ + +AK K N + ++LR CN P + Y Y L + ++++ K +L+++L
Sbjct: 564 IYQDILKEAKHLKLQNLKMIQLRNICNSPFIYYNY-PILDQAEVIRNSAKFQVLNQLLPP 622
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR---RIDGTTSLEDRESAIVDFNSHDSD 1396
L +GH+VL+F+ TK+LD+LE++L+ L + R+DG+T+ + R+ I FN++
Sbjct: 623 LLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPK- 681
Query: 1397 CF-IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAV 1455
F +FL S RA G G+NL +ADTVI+ D D NP+ + QA+ R HRIGQ VK I+ +
Sbjct: 682 -FKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVK-IFRFVI 739
Query: 1456 VDKI 1459
D I
Sbjct: 740 KDSI 743
Score = 38 (18.4 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 281 ASLIAQLIP--IMQSRIVANHKANESNMGAPSSPVP 314
+ + +Q+I I+Q+ + + E N AP +PVP
Sbjct: 67 SQIYSQIIADNILQTSL---ERKEEQNNVAPPAPVP 99
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 767 (275.1 bits), Expect = 2.4e-70, Sum P(3) = 2.4e-70
Identities = 180/468 (38%), Positives = 264/468 (56%)
Query: 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
++ +QPS ++ G +RD+Q+ G+ WM L++ NGILADEMGLGKTVQ + ++YL+
Sbjct: 377 KLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSL 436
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL------FSQEVAALKF 1101
+GP LI+VP + + W+ L W P ++ I Y G + R+ + S LKF
Sbjct: 437 KQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKF 496
Query: 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPL 1161
N+L+TTYE+I+ D+ +L+ + W+Y+ IDEA R+K+ ES L L ++R RLL+TGTPL
Sbjct: 497 NILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPL 556
Query: 1162 QNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221
QN+ P F R + F QP NA E E+ I L
Sbjct: 557 QNNLKELASLVNFLMPGKFYIRDELN--FDQP--------NA-----EQERD---IRDLQ 598
Query: 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ 1281
+ L+PF+LRR +DVE SLP K +LR +S +Q+ Y I T R R Q
Sbjct: 599 ERLQPFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNI-LTKNYRALTGHTDGRGQ 657
Query: 1282 KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ 1341
+ + K ++N ++ + + ++ + GK+ +LD++L +L+
Sbjct: 658 LSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLK 717
Query: 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401
GHRVL+FS M ++L+IL EY+ R Y+R+DGT R +I FN+ DS F+FL
Sbjct: 718 HDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFL 777
Query: 1402 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
LS RA G G+NL +ADTVII+D D NP+ + QA+ARAHRIGQK V V
Sbjct: 778 LSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNV 825
Score = 402 (146.6 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 137/416 (32%), Positives = 211/416 (50%)
Query: 1202 NADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
N D E E+ I L + L+PF+LRR +DVE SLP K +LR +S +Q+ +
Sbjct: 582 NFDQPNAEQERD---IRDLQERLQPFILRRLKKDVEKSLPSKSERILRVELSDMQT---E 635
Query: 1262 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD---- 1317
W K T R + + + ++ +L N +EL+K NHP L +P ++
Sbjct: 636 WYKNILTKNY------RALTGHTDGRGQL--SLLNIVVELKKVSNHPYL-FPGAAEKWMM 686
Query: 1318 ----LSKDFL---VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
+D L + + GK+ +LD++L +L+ GHRVL+FS M ++L+IL EY+ R
Sbjct: 687 GRKMTREDTLRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYN 746
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y+R+DGT R +I FN+ DS F+FLLS RA G G+NL +ADTVII+D D NP+
Sbjct: 747 YQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQA 806
Query: 1431 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDEL-RSGGTVDLEDDLAGKDRYIGS 1489
+ QA+ARAHRIGQK V V Y D + +ED L R+ + LE + +G
Sbjct: 807 DLQAMARAHRIGQKNHVNV-YRFLSKDTV----EEDILERARRKMILEYAIIS----LGV 857
Query: 1490 IEGLIRNNIQQYKIDMADEVINAGRFDQ-RTTHEERR---MTLETLL-HDEERYQETVHD 1544
E + +Y ++ G + + T +++ M L+ +L H E+R ++ +D
Sbjct: 858 TEKSKNSKNDKYDAQELSAILKFGASNMFKATENQKKLENMNLDDILSHAEDR--DSSND 915
Query: 1545 VPSLQEVNRMIARSEDEVELFDQMDEEFGWI-----EEMTRYDQVPKWLRAS-TKE 1594
V + + E+ D E+ W EEM R ++ + L A KE
Sbjct: 916 VGGASMGGEEFLK---QFEVTDYKAEDLNWDDIIPEEEMERIEEEERMLAAQRAKE 968
Score = 43 (20.2 bits), Expect = 2.4e-70, Sum P(3) = 2.4e-70
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 1869 QSEPSSKSRRNLPSRKIANAPKSRASLKT 1897
Q+EP ++ R+ + +N +R S+KT
Sbjct: 1276 QAEPPKRALRSNSGKAASNKRTTRNSMKT 1304
Score = 42 (19.8 bits), Expect = 2.4e-70, Sum P(3) = 2.4e-70
Identities = 23/120 (19%), Positives = 48/120 (40%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEA 827
+ + +++E+ + +Y + R Q K+ + +K W++ +
Sbjct: 189 DFEDEEEEVEEQVEEEYEPIIDFVLNHRKRADAQ-DDDPKSSYQYLIK----WQE-VSHL 242
Query: 828 HWAIRDARTARN-RGVAKYHERILRE--FSKRKDDDRNKRMEALKNNDVERYRE-MLLEQ 883
H D T + RG K I + + + +D E ++ D+ER R+ ML E+
Sbjct: 243 HNTWEDYSTLSSVRGYKKVDNYIKQNIIYDREIREDPTTTFEDIEALDIERERKNMLFEE 302
Score = 40 (19.1 bits), Expect = 3.9e-70, Sum P(3) = 3.9e-70
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 860 DRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSS 900
+ KR +A ++ Y+ ++ Q+ S + E Y+ LSS
Sbjct: 214 NHRKRADAQDDDPKSSYQYLIKWQEVSHLHNTWEDYSTLSS 254
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 442 (160.7 bits), Expect = 4.5e-70, Sum P(4) = 4.5e-70
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 678 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 728
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 1333
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 729 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILL 785
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 786 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 845
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 1451
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 846 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 905
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 906 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 962
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 1570
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 963 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1020
Query: 1571 EFGWIEEMTR--YDQV-PKWLRASTKE 1594
E +EE +D++ P+ R +E
Sbjct: 1021 EEE-LEERPHKDWDEIIPEEQRKKVEE 1046
Score = 377 (137.8 bits), Expect = 4.5e-70, Sum P(4) = 4.5e-70
Identities = 77/206 (37%), Positives = 119/206 (57%)
Query: 991 RQPSMLRAGTL--RDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLMEFK 1047
+QP+ L L RDYQ+ GL W+ + N+ N ILADEMGLGKT+Q ++ ++YL
Sbjct: 460 KQPAYLGGENLELRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQH 519
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP LI+VP + L +W+ E W P ++ + Y+G R+ + E LKFN
Sbjct: 520 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFN 579
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
L+TTYE ++ D++ L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQ
Sbjct: 580 ALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 639
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHD 1188
N PE F+ + F +
Sbjct: 640 NSLKELWSLLHFIMPEKFEFWEDFEE 665
Score = 53 (23.7 bits), Expect = 4.5e-70, Sum P(4) = 4.5e-70
Identities = 36/177 (20%), Positives = 67/177 (37%)
Query: 1736 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 1795
+ PV K L+ R L K + LE+ E AV+G ++ R + E+
Sbjct: 1286 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-EGAVTGGEEAKLKKR----KPRVKKEN 1340
Query: 1796 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 1854
+ P++K + I PRH+ EE D L + + +NK + + +
Sbjct: 1341 KA---PRLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSS 1397
Query: 1855 EMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK-TGRLNCMP-GHTED 1909
G+ R + K + ++ + + +S+ + T +P G ED
Sbjct: 1398 RKDKEGDKE--RKKSKDKKEKKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDED 1452
Score = 50 (22.7 bits), Expect = 4.5e-70, Sum P(4) = 4.5e-70
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 566 KEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ 625
KEEA +G + SP +G + K+ P ++EQ+ S+ ++ + R
Sbjct: 129 KEEASSGSESG--SPKRRGQRQLKKQEKWKREPSEDEQEQGTSAESEPEQKKVKARRPVP 186
Query: 626 QSDFPADRGK 635
+ P R K
Sbjct: 187 RRTVPKPRVK 196
Score = 44 (20.5 bits), Expect = 3.1e-28, Sum P(3) = 3.1e-28
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 1786
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 957 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1015
Query: 1787 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 1846
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1016 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1067
Query: 1847 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 1903
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1068 KAQTNDSDSDTESKRQAQRSSASESETDESDDDKK----------PKRRGRPRSVRKDLV 1117
Query: 1904 PGHTEDAADHFKESW 1918
G T+ F +++
Sbjct: 1118 EGFTDAEIRRFIKAY 1132
Score = 43 (20.2 bits), Expect = 4.9e-69, Sum P(4) = 4.9e-69
Identities = 24/100 (24%), Positives = 42/100 (42%)
Query: 1826 TDTPLHRGDSSLLPFQMDNKYPA-QLRTDTEMKAHGESNSLRHDQSEPS---SKSRRNLP 1881
TD L D +LP + D K QL+T + SL + + +K ++ P
Sbjct: 1275 TDPELKLTDKKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKEGAVTGGEEAKLKKRKP 1334
Query: 1882 SRKIAN-APKSRASLKTGRLNCMPGHTEDAADHFKESWDG 1920
K N AP+ + + G P H+++ ++ + DG
Sbjct: 1335 RVKKENKAPRLKD--EHGIEFSSPRHSDNPSEEGEVKDDG 1372
Score = 42 (19.8 bits), Expect = 6.3e-69, Sum P(4) = 6.3e-69
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 1618 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 1650
V GE +KR P+ KK + DE G E+S
Sbjct: 1321 VTGGEEAKLKKRKPRVKKENKAPRLKDEHGIEFS 1354
Score = 38 (18.4 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 1515 FDQRTTHEERRMTLETLLHDEERYQETVHD 1544
FD R H+ +M + +EE+ Q+ D
Sbjct: 1534 FDARKLHKLYKMAHKKRSQEEEKEQKKKDD 1563
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 532 (192.3 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 108/269 (40%), Positives = 166/269 (61%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +L+ +LR+YQ +GL W++++ KLNGILADEMGLGKT+Q +AL+A+L KGN+GP
Sbjct: 907 PFLLKH-SLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLACAKGNWGP 965
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLI+VP++V++NW+ E KW P + Y G++ +R F+V +T+Y+ ++
Sbjct: 966 HLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKLVV 1025
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D+ + WKY+I+DEAQ +K+ +S + L + +RRLLLTGTPLQND
Sbjct: 1026 QDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLM 1085
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + ++ ET +I RLH+++ PF+LRR
Sbjct: 1086 HFLMPYVFSSHREFKEWFSNPMT--GMIEG-NMEYNET-----LITRLHKVIRPFLLRRL 1137
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
++VE +P K V+ CR+S Q +Y+
Sbjct: 1138 KKEVEKQMPKKYEHVITCRLSNRQRYLYE 1166
Score = 314 (115.6 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 86/263 (32%), Positives = 144/263 (54%)
Query: 1310 LNYPYFSDLSKDF----LVK-SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 1364
L +P S+++ F L++ CGKL +DR+L +L+ GHRVL+F+ MTK+LD+LE +L
Sbjct: 1635 LLHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFL 1694
Query: 1365 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 1424
+ +Y R+DG+T +E R+ + FN D F F+LS R+ G G+NL ADTVI YD
Sbjct: 1695 NYHGHIYLRLDGSTRVEQRQILMERFNG-DKRIFCFILSTRSGGVGINLTGADTVIFYDS 1753
Query: 1425 DPNPKNEEQAVARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 1482
D NP + QA R HRIGQ R+V + + E ++ ++ +K ++ R + +E
Sbjct: 1754 DWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIE-VNILKKANQKRMLSDMAIEGGNFT 1812
Query: 1483 KDRYIGS-IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 1541
+ S I+ L ++Q + D + + +++ +++R + TL ET
Sbjct: 1813 TTYFKSSTIKDLF--TMEQSEQDESSQ--------EKSENKDRIVATTTLSDTPSTVVET 1862
Query: 1542 VHDVPSLQEVNRMIARSEDEVEL 1564
+ SL+ +A +EDE ++
Sbjct: 1863 --EKQSLRAFEHALAAAEDEQDV 1883
Score = 126 (49.4 bits), Expect = 2.6e-27, Sum P(6) = 2.6e-27
Identities = 32/93 (34%), Positives = 47/93 (50%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
+I RLH+++ PF+LRR ++VE +P K V+ CR+S Q +Y ED
Sbjct: 1121 LITRLHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLY-------------ED 1167
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308
R + Q ++ N M+LRK CNHP
Sbjct: 1168 FMSRAKTRETLQTGNLLSVINVLMQLRKVCNHP 1200
Score = 52 (23.4 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 21/80 (26%), Positives = 30/80 (37%)
Query: 587 AVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDA 646
A T+ + VPG A S+ + E +L + + PA VA A
Sbjct: 324 AATESNSSTTVPGTATSGAATSTSATSAEASGNVLAVEAEIKIPAVGATPVAISTKLPAA 383
Query: 647 VQVKKPAQATTALQPKDVGA 666
V V+ Q T L P + A
Sbjct: 384 V-VQLTQQGGTPLLPCNTSA 402
Score = 51 (23.0 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 304 SNMGAPSSPVPVSKQQVTSPTIAGENSPHAN 334
+ + P SP+P +QQ T A H+N
Sbjct: 84 AQLPVPLSPLPQQQQQTAEATAAAAAPAHSN 114
Score = 48 (22.0 bits), Expect = 3.6e-69, Sum P(6) = 3.6e-69
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 547 ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVP------GK 600
++N A +S SL Y G+ AA+ G G++ T ++ P G
Sbjct: 413 QNNASSGSAAASGGGGSLTPTPLYTGNGPAALGGSG-GLTPGTPTSGSLLSPALGGGSGT 471
Query: 601 EEQQAPVSSVKSDQEV 616
A S K+ QEV
Sbjct: 472 PNSAAQEFSFKAKQEV 487
Score = 43 (20.2 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 18/91 (19%), Positives = 38/91 (41%)
Query: 806 QKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRM 865
+K +K K + ++ + A A+ + + VA + R ++ F + K +
Sbjct: 541 KKNAAKKCAKMVQKYFQDKATAAQRAEKAQELQLKRVASFIAREVKSFWSNVE----KLV 596
Query: 866 EALKNNDVERYREMLLEQQTSIPGDAAERYA 896
E +E R+ L+Q S D E+++
Sbjct: 597 EYKHQTKIEEKRKQALDQHLSFIVDQTEKFS 627
Score = 38 (18.4 bits), Expect = 1.4e-69, Sum P(6) = 1.4e-69
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1738 PVSPQKFGSLSALEARPGSLSKRM 1761
PVSPQ ++ A + R ++M
Sbjct: 2304 PVSPQNIAAMKANKIREKQRGQQM 2327
Score = 38 (18.4 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 347 KARPTVSPSPLGSTT 361
+ARPT+SP + T
Sbjct: 1204 EARPTISPFQMDGIT 1218
Score = 37 (18.1 bits), Expect = 1.1e-68, Sum P(5) = 1.1e-68
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 551 KDAQAVSSSNVQSLPKE-EAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSS 609
K Q S + P++ E + DD AV + A T++ EE +S+
Sbjct: 786 KSEQPPSPKRRKLAPRDPELDSDDDSTAVDSTEESEDAATED---------EED---LST 833
Query: 610 VKSDQEVE 617
VK+D ++E
Sbjct: 834 VKTDTDME 841
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 511 (184.9 bits), Expect = 1.6e-69, Sum P(4) = 1.6e-69
Identities = 119/329 (36%), Positives = 179/329 (54%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P + R GTLR+YQ GL+W+ +L+++ NGILADEMGLGKT+Q +AL+A+L K N+GP
Sbjct: 440 PFLFR-GTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEKENWGP 498
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ E K+LP + Y G +R S ++V +T+Y+ ++
Sbjct: 499 HLIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLVL 558
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + W+Y+I+DEA +K+ S + L + + RLLLTGTPLQN+
Sbjct: 559 QDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLL 618
Query: 1173 XXXXP-------EVFDNRKAFHDWFSQPFQK---EGPTHNADDDWLETEKKVIIIHRLHQ 1222
P F N K F DWFS+P + EG N + + T + +LH+
Sbjct: 619 YFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEA--MNT------VAKLHR 670
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
+L P++LRR +VE +P K V+ C++S Q +YD D R +
Sbjct: 671 VLRPYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYD-------------DFINRART 717
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311
I + + ++ N M+LRK CNHP L+
Sbjct: 718 REILASGNFMSIINCLMQLRKVCNHPNLH 746
Score = 302 (111.4 bits), Expect = 1.6e-69, Sum P(4) = 1.6e-69
Identities = 64/130 (49%), Positives = 84/130 (64%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K L CGKL +LDR+L L GHRVL+F+ MTK+LDILE++L Y R+DG T
Sbjct: 983 KRLLQYDCGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATK 1042
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+E R+ FN+ D +F+LS R+ G G+NL ADTVI YD D NP+ + QA R+H
Sbjct: 1043 IEQRQILTERFNNDDK-IPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSH 1101
Query: 1440 RIGQKREVKV 1449
RIGQ R+V +
Sbjct: 1102 RIGQTRDVHI 1111
Score = 47 (21.6 bits), Expect = 1.6e-69, Sum P(4) = 1.6e-69
Identities = 17/81 (20%), Positives = 32/81 (39%)
Query: 1497 NIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIA 1556
++Q ++ + + F + +T + T L + D S +E +
Sbjct: 1195 DVQAAQVARKESALEQTEFSETSTPQAMLTKDSTPLSSDSATPGFERD--STEEQSNTND 1252
Query: 1557 RSEDEVELFDQMDEEFGWIEE 1577
ED EL + +DE G I+E
Sbjct: 1253 MDEDRSELEEDLDETVGHIDE 1273
Score = 45 (20.9 bits), Expect = 1.6e-69, Sum P(4) = 1.6e-69
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 695 SSNNLTLAYDVKDLLSE-----EGLEVLQKKRSENLKKISGILAVNLER 738
SSNN+ ++Y +LLS + +K R+ ++ISG++ + +R
Sbjct: 109 SSNNIPISYR-DNLLSHVNGYARSMHNDRKVRASRSRRISGMILAHFKR 156
Score = 44 (20.5 bits), Expect = 2.1e-69, Sum P(4) = 2.1e-69
Identities = 22/116 (18%), Positives = 47/116 (40%)
Query: 783 QYRKFVRLCERQRVELMRQVQTSQKAM--REKQLKSISQWRKKLLEAHWAIRDARTARNR 840
++RK VEL + ++ + R+ L ++ + + + +R +R+ R
Sbjct: 89 EFRKKGYFTAEAPVELKKAPSSNNIPISYRDNLLSHVNGYARSMHNDR-KVRASRSRRIS 147
Query: 841 GVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYA 896
G+ H + L ++K + +KR+ L R+ + + AER A
Sbjct: 148 GMILAHFKRLSGADEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRAERAA 203
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 697 (250.4 bits), Expect = 1.7e-69, Sum P(3) = 1.7e-69
Identities = 195/545 (35%), Positives = 290/545 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q +A + + G +GP L+I P +
Sbjct: 37 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLS 95
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E
Sbjct: 96 TITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFE 154
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 155 MILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 214
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 215 SLLHFLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMML 256
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 257 RRLKEDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM 307
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N F + + DF +V+S GKL ++D
Sbjct: 308 --PNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLID 365
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ D
Sbjct: 366 KLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPD 425
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 426 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR-- 482
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1510
++ + +S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++
Sbjct: 483 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLL 533
Query: 1511 NAGRF 1515
G +
Sbjct: 534 RKGAY 538
Score = 39 (18.8 bits), Expect = 1.7e-69, Sum P(3) = 1.7e-69
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 1657
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 622 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 655
Score = 39 (18.8 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 1464 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 1516
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 638 KDDDLVEFSDLESEDDERPRSRRHDRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 697
Query: 1517 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 1550
+R T + R + + LLH +E + + D+ S E
Sbjct: 698 RRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAE 738
Score = 38 (18.4 bits), Expect = 1.7e-69, Sum P(3) = 1.7e-69
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1830 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859
LH RGD ++ F D PA+ E++ H
Sbjct: 718 LHYRGDENIKGFIWDLISPAENGKTKELQNH 748
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 752 (269.8 bits), Expect = 2.3e-69, Sum P(2) = 2.3e-69
Identities = 179/472 (37%), Positives = 271/472 (57%)
Query: 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
++ +QPS + G LRD+Q+ G+ WM L++ NGILADEMGLGKTVQ +A ++YL
Sbjct: 362 KLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSL 421
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
+GP L++VP + + W+ L W ++CI Y+G R + E +KFN
Sbjct: 422 RQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFN 481
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+TTYE+++ DRS LS + W+Y+ IDEA R+K+ ES L L +++ RLL+TGTPLQ
Sbjct: 482 LLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQ 541
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
N+ P F+ R+ + E P E++ I L +
Sbjct: 542 NNIRELAALVDFLMPGKFEIREEIN--------LEAPD----------EEQEAYIRSLQE 583
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIK--ATGTLRVDPEDEKRRV 1280
L+P++LRR +DVE SLP K +LR +S +Q +Y W K T RV +
Sbjct: 584 HLQPYILRRLKKDVEKSLPSKSERILRVELSDLQ--MY-WYKNILTRNYRVLTQSISSGS 640
Query: 1281 QKNPI-YQAKVYKTLNNRCM--ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRIL 1337
Q + + ++ K N+ + + ++ + + ++ K ++ S GK+ +LD++L
Sbjct: 641 QISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRRDEVLKGLIMNS-GKMVLLDKLL 699
Query: 1338 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDC 1397
+L+R GHRVL+FS M ++LDIL +YL R ++R+DGT R ++I FN+ +S
Sbjct: 700 SRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPD 759
Query: 1398 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
F+FLLS RA G G+NL +ADTVII+D D NP+ + QA+ARAHRIGQK V V
Sbjct: 760 FVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMV 811
Score = 43 (20.2 bits), Expect = 2.3e-69, Sum P(2) = 2.3e-69
Identities = 22/100 (22%), Positives = 41/100 (41%)
Query: 1782 QSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPE-ERSCTDTPLHRGDSSLLPF 1840
+S S++ + +Q+L+ ++ ++ IR+ R + E D + D +
Sbjct: 973 ESPSYSGTSERKSKKQMLKDEVLLEKEIRLLYRAMIRYGSLEHRYNDIVKY-ADLTTQDA 1031
Query: 1841 QMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNL 1880
+ K A L T + L +DQS S SR+ L
Sbjct: 1032 HVIKKIAADLVTASRKAVSAAEKDLSNDQSNNKS-SRKAL 1070
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 506 (183.2 bits), Expect = 6.3e-69, Sum P(4) = 6.3e-69
Identities = 112/325 (34%), Positives = 179/325 (55%)
Query: 990 MRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
++QP++L A L+ YQ+ G+ W+++LY+ +NGILADEMGLGKT+Q +A++A+L E K
Sbjct: 1152 LKQPTILNAD-LKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNI 1210
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL---FSQEVAALK---FNV 1103
+GP LI+ P + L NWK+E K++P+ I Y G + QR+ + ++ + + F+V
Sbjct: 1211 WGPFLIVTPKSTLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHV 1270
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
L+T+Y I+ D ++ W+Y+++DEA +K S + L + C+ RLLLTGTP+QN
Sbjct: 1271 LITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQN 1330
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
P FD+ F +WFS+ + H L + ++RLH I
Sbjct: 1331 SMAELWALLHFIMPTFFDSHDEFAEWFSKDIEN----HAMSQGGLNEHQ----LNRLHMI 1382
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKN 1283
L+PFMLRR DVE +P K + + C ++ Q +Y I++ ++ +
Sbjct: 1383 LKPFMLRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQSIRSNISIT-------ELLGGA 1435
Query: 1284 PIYQAKVYKTLNNRCMELRKTCNHP 1308
+ K L N M+ RK CNHP
Sbjct: 1436 SFSEQGSMKALMNFVMQFRKVCNHP 1460
Score = 316 (116.3 bits), Expect = 6.3e-69, Sum P(4) = 6.3e-69
Identities = 68/141 (48%), Positives = 93/141 (65%)
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GKL +LD++L L+ GHRVL++S TK+++ILE+++ +R+ Y R+DG++ L+DR +
Sbjct: 1767 GKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMV 1826
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
DF S D F FLLS RA G G+NL SADTVI YD D NP +EQA RAHR+GQ R V
Sbjct: 1827 DDFQS-DPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPV 1885
Query: 1448 KV---IYMEAVVDKISSHQKE 1465
V I + +KI K+
Sbjct: 1886 TVYRLITKNTIEEKILKRAKQ 1906
Score = 52 (23.4 bits), Expect = 6.3e-69, Sum P(4) = 6.3e-69
Identities = 24/113 (21%), Positives = 50/113 (44%)
Query: 792 ERQRVELMRQVQTSQKAMREKQLKSISQ-WRKKLLEAHWAIRDARTARN---RGVAKYHE 847
ER R L + ++ K + + I++ + KK+L H + ++ + R + +
Sbjct: 652 ERHRNPLSSSISSAPKPLDFDSDEDITEEYYKKMLANHARSKKSKKETDKIFRELELSDD 711
Query: 848 RILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSS 900
+ E + RK KR+ ++ND ++M+ + S + +RY SS
Sbjct: 712 DVFDEKNDRKQLKMMKRLMDREDNDRRVKKKMVDPKYNSSSSRSKDRYGSSSS 764
Score = 42 (19.8 bits), Expect = 7.0e-68, Sum P(4) = 7.0e-68
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 529 NNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQS 563
+N RV K+ + + S KD SSS+ S
Sbjct: 734 DNDRRVKKKMVDPKYNSSSSRSKDRYGSSSSSKSS 768
Score = 42 (19.8 bits), Expect = 2.3e-20, Sum P(4) = 2.3e-20
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 1228 MLRRRVEDVEGSLPPKVSI--VLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPI 1285
M++R ++ ++ PPK + +R + + Y W K D + KRR +K
Sbjct: 921 MMKRELK-IKNQKPPKATKDNQIRAKKLVKEMGAY-WRK----FDKDEREAKRRAEKEEA 974
Query: 1286 YQAKVYKTLNNRCMELRK 1303
Q K + + + RK
Sbjct: 975 NQRKREEEVQEAKRQQRK 992
Score = 40 (19.1 bits), Expect = 6.3e-69, Sum P(4) = 6.3e-69
Identities = 19/92 (20%), Positives = 34/92 (36%)
Query: 277 QPANASLIAQ---LIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHA 333
QP+ S I L I + H ++ SN G P + S + S +++ +S +
Sbjct: 411 QPSTTSPIMPSNTLFNIKPIGTTSPHLSSSSNQGLPPISLSSSSKHKLSSSLSSSSSLSS 470
Query: 334 NX---XXXXXXXXXXAKARPTVSPSPLGSTTS 362
+ + P SPS ++S
Sbjct: 471 STNQGASSAISSSISVLSSPKQSPSMKSMSSS 502
Score = 39 (18.8 bits), Expect = 7.2e-69, Sum P(3) = 7.2e-69
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTL 228
+Q+ + ++Q Q QQQ Q + QQ +
Sbjct: 835 DQYNQ-QQQYNQQQQQYQSQNQQQHQQQQQQI 865
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 530 (191.6 bits), Expect = 6.9e-69, Sum P(3) = 6.9e-69
Identities = 119/324 (36%), Positives = 181/324 (55%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR GTLR+YQ GL W+ LY+N +NGILADEMGLGKT+Q +AL+A+L G +GP
Sbjct: 818 PHLLR-GTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGP 876
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HL++VP +V++NW+ E KW P + Y G +++R + + +NVL+T+Y+ ++
Sbjct: 877 HLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQLVL 936
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D+ L + W Y+I+DEA +K+ S + L +R + RLLLTGTPLQN+
Sbjct: 937 QDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLL 996
Query: 1173 XXXXP--------EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P E F + + F +WF +P ++ H + ++ E K ++ +LH +L
Sbjct: 997 FFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQI-LEHGRET--MDDEAKQVVT-KLHTVL 1052
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
P++LRR DVE +P K V+ CR+S Q +YD + R Q
Sbjct: 1053 RPYILRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMS-------------RAQTKE 1099
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHP 1308
+ Y ++ N M+LRK CNHP
Sbjct: 1100 TLASGNYLSIINCLMQLRKVCNHP 1123
Score = 286 (105.7 bits), Expect = 6.9e-69, Sum P(3) = 6.9e-69
Identities = 61/130 (46%), Positives = 82/130 (63%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K L CGKL LD++L L+ GHR L+F+ MTK+LD+LE++L Y R+DGTT
Sbjct: 1365 KRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTK 1424
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+E R+ FN+ D+ F+LS R+ G G+NL ADTVI YD D NP ++Q R H
Sbjct: 1425 VEQRQILTDRFNN-DNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCH 1483
Query: 1440 RIGQKREVKV 1449
RIGQ R+V +
Sbjct: 1484 RIGQTRDVHI 1493
Score = 46 (21.3 bits), Expect = 2.2e-68, Sum P(4) = 2.2e-68
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 704 DVKDLLSEEGLEVLQKKR--SENLKKISGILAVNLERKRI 741
D +D+L E+ E+ K++ +++LKK+ + ++R R+
Sbjct: 384 DPEDILREQQEEMRGKRKQLAKDLKKMFELARAEIDRVRL 423
Score = 40 (19.1 bits), Expect = 6.9e-69, Sum P(3) = 6.9e-69
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 529 NNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAV 588
+++D G AE+ LR +N D + S E++ DD AA + G V
Sbjct: 501 DDRDDDVGLTAEE-LRLKYANLPDTNPHPDQSPYS--DEDSEDSDDIAADNTPGDTSGGV 557
Query: 589 TKEPAP 594
+ P P
Sbjct: 558 NRSPPP 563
Score = 40 (19.1 bits), Expect = 2.2e-68, Sum P(4) = 2.2e-68
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELM 799
E +Q+ ++ A+ DR ++ L E++R+E++
Sbjct: 427 EEEQKAKDQRAL-DRAIKQSTMLFEKRRLEIL 457
Score = 39 (18.8 bits), Expect = 1.5e-67, Sum P(4) = 1.5e-67
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 272 NIDLSQPANASLIAQLIP 289
N DLS PA + A+L P
Sbjct: 676 NKDLSTPATVTASAELEP 693
Score = 39 (18.8 bits), Expect = 1.5e-67, Sum P(4) = 1.5e-67
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 538 IAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGD-----DKAAVSPVGQGMSAVTKEP 592
+AED ++ D + +S S+P + A + ++ P A + E
Sbjct: 720 VAEDAAALADTEPVDVDVLDTSTNDSVPPVMSPATNLLKQIERQQHEPYHS--RAASSEA 777
Query: 593 APVVVPGKEEQQAPVSSVKSDQE 615
+P V K + VSS+++ E
Sbjct: 778 SPGTVATKPSEPESVSSIEAPAE 800
Score = 39 (18.8 bits), Expect = 8.2e-17, Sum P(4) = 8.2e-17
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 802 VQTSQKAMREKQLKSISQWRKKLL-EAHWAIRDARTARNRGVAKYHER 848
+ + Q ++++Q+ W +L EAH I++ R+ R + + + R
Sbjct: 929 ITSYQLVLQDQQVLKRRSWHYMILDEAH-NIKNFRSQRWQALLTFRTR 975
Score = 38 (18.4 bits), Expect = 1.1e-68, Sum P(3) = 1.1e-68
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 589 TKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSV 637
T AP EE + S D+E E + T+ + + DR V
Sbjct: 460 TGSDAPETTTDDEEVETDNGSENDDEEGESNM-STETEEEDGDDRDDDV 507
Score = 37 (18.1 bits), Expect = 1.6e-42, Sum P(4) = 1.6e-42
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 1904 PGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRV 1943
P +T + + +W+ K ++ S A +D +RR+
Sbjct: 1196 PFNTLRERQYHRTNWEMKFNGSTVQSTLEALENDCRKRRM 1235
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 525 (189.9 bits), Expect = 3.9e-68, Sum P(6) = 3.9e-68
Identities = 111/277 (40%), Positives = 162/277 (58%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +L+ LR+YQ +GL W++SLY LNGILADEMGLGKT+ ++LIAYL KG +GP
Sbjct: 774 PFLLKF-PLREYQHIGLDWLVSLYEKNLNGILADEMGLGKTIMTISLIAYLAVQKGVWGP 832
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLI+VP++VL NW+ E +W P + Y G R + F+V +T+Y +M
Sbjct: 833 HLIVVPSSVLFNWEMEFKRWCPGLKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSMVM 892
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + W Y+I+DEA +K+ ++ +++ + +RRLLLTGTPLQN+
Sbjct: 893 SDHLIFRRKKWVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLMELWSLM 952
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P++F + + F DWFS P G DD E II+RLH +L PF+LRR
Sbjct: 953 HFLMPDIFQSHREFQDWFSNPVT--GMIEGGDD---VNED---IINRLHAVLRPFLLRRL 1004
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYD-WIKATGT 1268
+DVE +PPK + ++ C MS Q +Y+ +I ++ T
Sbjct: 1005 KKDVEKQMPPKHTHIVPCSMSRRQKFLYEEFINSSST 1041
Score = 303 (111.7 bits), Expect = 3.9e-68, Sum P(6) = 3.9e-68
Identities = 81/205 (39%), Positives = 116/205 (56%)
Query: 1314 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373
YF D K + CGKL L +L +L++ GHR L+F+ MTK+LDI E +L Y R
Sbjct: 1367 YFPD--KRLIQYDCGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLR 1424
Query: 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1433
+DG+T ++ R+ FN+ D F+F+LS R+ G GLNL ADTVI YD D NP + Q
Sbjct: 1425 LDGSTKIDKRQVLTERFNT-DPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQ 1483
Query: 1434 AVARAHRIGQKREVKV---IYMEAVVDKI--SSHQKE--DEL--RSGG-TVDLEDDLAGK 1483
A R HRIGQ REV + I + + I S+QK D++ ++G T D +L
Sbjct: 1484 AQDRCHRIGQTREVNIYRFITQHTIEENILKKSNQKRQLDKMVIKAGEFTTDFFKNLNLS 1543
Query: 1484 DRYIGSIEGLIRNNIQQYKIDMADE 1508
+ SI+ I++N+ Q + + A E
Sbjct: 1544 TK--SSID-TIKDNVTQQEWENAVE 1565
Score = 134 (52.2 bits), Expect = 2.2e-27, Sum P(6) = 2.2e-27
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD-WIKATGTLRVDPE 1274
II+RLH +L PF+LRR +DVE +PPK + ++ C MS Q +Y+ +I ++ T
Sbjct: 988 IINRLHAVLRPFLLRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLYEEFINSSST------ 1041
Query: 1275 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308
++ + + +N M+LRK CNHP
Sbjct: 1042 -------QSTLSSGSFFSIINI-LMQLRKVCNHP 1067
Score = 59 (25.8 bits), Expect = 3.9e-68, Sum P(6) = 3.9e-68
Identities = 27/163 (16%), Positives = 66/163 (40%)
Query: 1496 NNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMI 1555
N IQ++ + + E I++ + T ++++ + +++ Q+ Q+ +
Sbjct: 1640 NPIQKFALKLT-ESISSFTLESYGTVTKQQLKQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1698
Query: 1556 ARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSN 1615
+ + + + Q ++ ++ + Q PK L+ K+ N +K ++N N
Sbjct: 1699 QQQQQKQKQQQQQQQQQ---QQQQQQQQQPKILKLDEKDKENLKENEKEKENENENENEN 1755
Query: 1616 IGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1658
+ E ER++ K + KE +E E ++ N
Sbjct: 1756 ENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKENEKEKEN 1798
Score = 54 (24.1 bits), Expect = 1.8e-41, Sum P(5) = 1.8e-41
Identities = 26/119 (21%), Positives = 54/119 (45%)
Query: 1491 EGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 1550
E +++ + Q+ ++D VI AG F TT + + L T + +T+ D + QE
Sbjct: 1510 ENILKKSNQKRQLDKM--VIKAGEF---TTDFFKNLNLST-----KSSIDTIKDNVTQQE 1559
Query: 1551 VNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKN 1609
+ ++EDE ++ + E + ++ K ++S + T +N+S + N
Sbjct: 1560 WENAVEQAEDESDVLAYKNALKEADNEYQEFVEI-KDDKSSFTTITTTTSNVSTPTTNN 1617
Score = 49 (22.3 bits), Expect = 6.2e-21, Sum P(3) = 6.2e-21
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
++Q++Q QQQ+ Q+ + + QQ Q N Q Q QQ
Sbjct: 1161 QQQLQQQQQQLQQQQLQQQQ-FQQQFQQQNYNNNNFNQQQQQQQQQ 1205
Score = 48 (22.0 bits), Expect = 3.9e-68, Sum P(6) = 3.9e-68
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 272 NIDLSQPA--NASLIAQLIPIMQSRIVANHKA-NESNMGAPSS--PVPVSKQQVTSPTI 325
++ LS P+ N +A + R +N + N+SN G+ SS P P+ +++ TI
Sbjct: 62 SLSLSSPSIDNTIALATATNSSKKRSRSNSTSKNKSNTGSSSSTNPSPMGSPTLSTSTI 120
Score = 46 (21.3 bits), Expect = 8.5e-67, Sum P(6) = 8.5e-67
Identities = 19/82 (23%), Positives = 32/82 (39%)
Query: 1545 VPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSK 1604
VPS N +R + E +LFD ++ G E ++ +++ + +
Sbjct: 2253 VPSTT-TNSSTSRKKSEYDLFDASSQDEGSTNESGSTTNNNNINNPTSTSSSSSSSGRKR 2311
Query: 1605 KPSKNILFGSNIGVDSGEIETE 1626
K L SN GV G + E
Sbjct: 2312 DRKKQRLSKSNGGVGGGGSDLE 2333
Score = 42 (19.8 bits), Expect = 3.9e-68, Sum P(6) = 3.9e-68
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 406 TSLN--MTPGVDQPL-PVKNSSGP-ENSQMQYLRQLNRSSPQSAIP 447
T LN +T + Q P++ + P E QMQ L Q+N PQ P
Sbjct: 405 TQLNKQITEQIQQQQQPIEEITIPIEQQQMQLLAQVN---PQDFKP 447
Score = 42 (19.8 bits), Expect = 3.9e-40, Sum P(6) = 3.9e-40
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 1431 EEQAVARAHRIGQKREVKVIY-MEAVVDKISSHQKEDELRS 1470
++ ++ H +++E K++ M+ DKI ++E+E R+
Sbjct: 2095 QQYVYSKQHTKEKEKERKLLMKMKKEKDKIEKAKQEEERRA 2135
Score = 41 (19.5 bits), Expect = 2.0e-39, Sum P(6) = 2.0e-39
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 1601 NLSKKPSKNILFGSNIGVDSGEIETERKRGPKGK-KYPN-YKEVDDEIGEYSEASSDE 1656
NLS K S + + N+ E E+ Y N KE D+E E+ E D+
Sbjct: 1541 NLSTKSSIDTI-KDNVTQQEWENAVEQAEDESDVLAYKNALKEADNEYQEFVEIKDDK 1597
Score = 40 (19.1 bits), Expect = 2.0e-39, Sum P(6) = 2.0e-39
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 1524 RRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQM 1568
+ + L L D Y+ + S Q +N +I + +ELF+Q+
Sbjct: 1102 KNLNLNLLNLDLINYENSFSHYDSNQ-INSLIPKESVLLELFNQL 1145
Score = 39 (18.8 bits), Expect = 4.5e-66, Sum P(6) = 4.5e-66
Identities = 34/244 (13%), Positives = 91/244 (37%)
Query: 1641 EVDDEIGEYSEASSDERNGYP--VQXXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVC 1698
E + ++ Y A + N Y V+ + V P +N S +D
Sbjct: 1568 EDESDVLAYKNALKEADNEYQEFVEIKDDKSSFTTITTTTSNVSTPTTNN--SSDD---- 1621
Query: 1699 EGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSA--LEARPGS 1756
D + +NT++ +VE+ + LT+ +S + + +G+++ L+ +
Sbjct: 1622 ---IDMVDVDDNTQD--LVEDYLNPIQKFALK-LTESISSFTLESYGTVTKQQLKQQQQQ 1675
Query: 1757 LSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHT 1816
++ + ++ + QQ + + + +Q Q + ++ + +++ +
Sbjct: 1676 QQQQQQQQQQQQQQQQQQQQQQQQQQQQKQKQQQQQQQQQQQQQQQQQQPKILKLDEKDK 1735
Query: 1817 VERPEERSCTDTPLHRGDSSLLPFQMDN-KYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 1875
E + + + + DN K + + E++ E + + ++ E + K
Sbjct: 1736 ENLKENEKEKENENENENENENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKE-NEK 1794
Query: 1876 SRRN 1879
+ N
Sbjct: 1795 EKEN 1798
Score = 39 (18.8 bits), Expect = 6.6e-20, Sum P(3) = 6.6e-20
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
++Q +Q QQQ Q+ + QQ + Q Q+QQ+
Sbjct: 1165 QQQQQQLQQQQLQQQQFQQQFQQQNYNNNNFNQQQQQQQQQYQYQQN 1211
Score = 38 (18.4 bits), Expect = 3.9e-68, Sum P(6) = 3.9e-68
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 847 ERILREFSKRKDDDRNKRMEALKNND 872
+++ +E S DDD N + NN+
Sbjct: 705 KKLDQEKSDNDDDDNNNNEDDNNNNN 730
Score = 38 (18.4 bits), Expect = 9.9e-40, Sum P(6) = 9.9e-40
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1425 DPNPKNEEQAVARAHRIGQKREVKV 1449
D N N+ + R R+G+ ++V +
Sbjct: 1965 DENEGNDFEGGGRGGRVGEGKKVMI 1989
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 750 (269.1 bits), Expect = 1.4e-67, Sum P(3) = 1.4e-67
Identities = 185/515 (35%), Positives = 286/515 (55%)
Query: 942 SEEEVRSAAACAGEEVM-IRNRFLEMNAPRDGSSVNKYYSLAHAVN-ERVMRQPSMLRAG 999
S E+ A A E+V + R P S++ Y L+ E++ +QP ++ G
Sbjct: 305 SWEDAEEIAKIAPEQVTKYQQRLNSKILP----SLSANYPLSQRPRFEKLFKQPVFIKNG 360
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
LRD+Q+ GL WM L++ NGILADEMGLGKTVQ +A +++L+ + GPHL++VP
Sbjct: 361 ELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARRQNGPHLVVVPL 420
Query: 1060 AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV----AALKFNVLVTTYEFIMYDR 1115
+ + W+ KW P V+C+YY+G + R + E+ KFNVL+TTYE+I+ D+
Sbjct: 421 STVPAWQETFEKWAPDVNCVYYLGNGEARKTIREYELYNQNRKPKFNVLLTTYEYILKDK 480
Query: 1116 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 1175
++L W+++ +DEA R+K+ ES L L ++ RLL+TGTPLQN+
Sbjct: 481 NELGAFKWQFLAVDEAHRLKNAESSLYEALKGFKVSNRLLITGTPLQNNVKELAALCNFL 540
Query: 1176 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235
P F +E D + +++E++ I L + + PF+LRR +D
Sbjct: 541 MPGKFT------------IDQE-----IDFETIDSEQEQYI-KDLQKKISPFILRRLKKD 582
Query: 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 1295
VE SLP K +LR +S IQ+ Y I ++ + ++ I +++ K N
Sbjct: 583 VEKSLPSKSERILRVELSDIQTEYYKNIITKNYAALNAGNRGSQISLLNI-MSELKKASN 641
Query: 1296 NRCM-ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT 1354
+ + + + P + K +V S GK+ +L+++L +L++ GHRVL+FS M
Sbjct: 642 HPYLFDGAEDKVLDKAGSPSRENTLKG-IVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMV 700
Query: 1355 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1414
++LDIL +Y+ + ++R+DGT R+ AI FN+ S F FLLS RA G G+NL
Sbjct: 701 RMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKDFAFLLSTRAGGLGINLM 760
Query: 1415 SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
+ADTVII+D D NP+ + QA+ARAHRIGQK V V
Sbjct: 761 TADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSV 795
Score = 378 (138.1 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 143/465 (30%), Positives = 224/465 (48%)
Query: 1204 DDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
D + +++E++ I L + + PF+LRR +DVE SLP K +LR +S IQ+ Y I
Sbjct: 552 DFETIDSEQEQYI-KDLQKKISPFILRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNI 610
Query: 1264 KATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------------N 1311
++ + ++ +L N EL+K NHP L
Sbjct: 611 ITKNYAALNAGNRGSQI------------SLLNIMSELKKASNHPYLFDGAEDKVLDKAG 658
Query: 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1371
P + K +V S GK+ +L+++L +L++ GHRVL+FS M ++LDIL +Y+ + +
Sbjct: 659 SPSRENTLKG-IVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQF 717
Query: 1372 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNE 1431
+R+DGT R+ AI FN+ S F FLLS RA G G+NL +ADTVII+D D NP+ +
Sbjct: 718 QRLDGTVPSSKRKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMTADTVIIFDSDWNPQAD 777
Query: 1432 EQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDELRSGGTVDLE-DDLAGKDRYI 1487
QA+ARAHRIGQK V V + + V ++I ++ + + L D + K+
Sbjct: 778 LQAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIISLGITDPSAKN--- 834
Query: 1488 GSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETL-LHDEERYQETVHDVP 1546
GS N + Q AG + ++++ LE L L D + E P
Sbjct: 835 GSKTEPSTNELSQIL------KFGAGTMFKENNNQQK---LENLNLDDVLSHAEDHVTTP 885
Query: 1547 SLQEVNRMIARSEDEVELFD-QMDEEFGWI---EEMTRYDQVPKWLRASTKEVNATIANL 1602
L E N + E+ D + D E+ I EE+T+ K +A + + IA
Sbjct: 886 ELGESNLGSEEFLKQFEVTDYKADVEWDDIIPQEELTKLKDEEK-RKADEQYLQDQIAMY 944
Query: 1603 SKKPSKNILF--GSNIGVD---SGEIETERKRGPKGKKYPNYKEV 1642
S++ + F GS++ D SGE +R G + KE+
Sbjct: 945 SRRKAAVRKFENGSSVPSDVEDSGEDSRPLRRRNAGDHQLSEKEI 989
Score = 39 (18.8 bits), Expect = 1.4e-67, Sum P(3) = 1.4e-67
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 295 IVANHKANESNMGAPSSP 312
IV +HK NE N P
Sbjct: 175 IVMDHKLNEENAEKTGDP 192
Score = 39 (18.8 bits), Expect = 1.4e-67, Sum P(3) = 1.4e-67
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 1869 QSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADH 1913
Q + + SRR RK N + ++ + P +A DH
Sbjct: 938 QDQIAMYSRRKAAVRKFENGSSVPSDVEDSGEDSRPLRRRNAGDH 982
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 448 (162.8 bits), Expect = 1.0e-66, Sum P(3) = 1.0e-66
Identities = 115/336 (34%), Positives = 184/336 (54%)
Query: 989 VMRQPSMLRAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
++ QP +L +G L DYQI+GL W+ ++ ++NGILADEMGLGKT+QV+A +AYL E
Sbjct: 276 IVEQPKLLSSGLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENG 335
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL---FSQEVAALKFNVL 1104
+ HLI+VP++ L NW++E+ +W P + Y G++D+R R+ F+++ F+VL
Sbjct: 336 LSQAAHLIVVPSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKD-GFTGFDVL 394
Query: 1105 VTTYEFI--MYDRSKLSKV-DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPL 1161
+TTY + + K+ +V Y+I DEA +K+ + +L + R+LLTGTPL
Sbjct: 395 LTTYHIVGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPL 454
Query: 1162 QNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221
QN+ P+ F K+ D F K+G + D+ + ++ I R
Sbjct: 455 QNNLLELISLLCFVMPKFF--AKSIED-IKSLFAKKGKSDGDQDEVSQFQETQI--QRAK 509
Query: 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ 1281
+I++PF+LRR +DV +LP K+S+V + MS+ Q Y + VD +
Sbjct: 510 RIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHEL-------VDYYSNNKGEV 562
Query: 1282 KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD 1317
+ +A + ME+R+ NHPLL YF+D
Sbjct: 563 CSSSERAGIAIM-----MEMRRIANHPLLMRHYFTD 593
Score = 324 (119.1 bits), Expect = 1.0e-66, Sum P(3) = 1.0e-66
Identities = 74/182 (40%), Positives = 112/182 (61%)
Query: 1307 HPLLNYPYFSDLS-KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365
+ ++N F D+ D L+ GK LD +L KL+ GHRVLLFS T +LDI+EEYL+
Sbjct: 630 YQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLR 689
Query: 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1425
R+ + R+DG T++ R+ I DFN DS F+FLLS +A G G+NL +ADT +I+D D
Sbjct: 690 IRKFGFCRLDGATAVNVRQDLITDFNGDDS-IFVFLLSTKAGGVGINLTAADTCVIHDID 748
Query: 1426 PNPKNEEQAVARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGK 1483
NP N++QA R HR+GQ+R V + + E+ +++ E++L+ LE D+
Sbjct: 749 FNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLK------LEKDITSN 802
Query: 1484 DR 1485
++
Sbjct: 803 EK 804
Score = 47 (21.6 bits), Expect = 1.0e-66, Sum P(3) = 1.0e-66
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 532 DRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSP 580
+RV GK + +S+G D+Q + ++ KE+ A +SP
Sbjct: 45 ERVPGKKRIQVMADSDSDGNDSQTPKKTKLELTVKEKEERYMAAAKISP 93
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 462 (167.7 bits), Expect = 6.3e-66, Sum P(2) = 6.3e-66
Identities = 101/286 (35%), Positives = 161/286 (56%)
Query: 984 AVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043
A ++ ++QP +L+ L+ YQ+ GL W+++LY N LNGILADEMGLGKTVQ +AL+A++
Sbjct: 205 APDDAAIKQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFI 264
Query: 1044 MEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA---KDQRSRL---FSQEVA 1097
E GP L+ P + L NW +E K+ P + + Y G K++ ++L F Q
Sbjct: 265 YEMDTK-GPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGG 323
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLT 1157
+++T+YE I+ D + +WK++I+DE R+K+ L ++L + RLLLT
Sbjct: 324 T---GIVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLT 380
Query: 1158 GTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNAD--DDWLETEKKVI 1215
GTPLQN+ P++F + + F+ WF G N++ + + E +
Sbjct: 381 GTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKN 440
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGS-LPPKVSIVLRCRMSAIQSAIY 1260
+I LH IL+PF+LRR + V + LPPK ++ C M++ Q Y
Sbjct: 441 LISNLHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFY 486
Score = 300 (110.7 bits), Expect = 6.3e-66, Sum P(2) = 6.3e-66
Identities = 76/206 (36%), Positives = 117/206 (56%)
Query: 1258 AIYDWI--KATG--TLRVDPEDEKRRVQKNPIYQAKVY-----KTLNNRCMELRKTCNHP 1308
+I D+I K +G T D + +Q + +Y+ + K L N M+LR+ +
Sbjct: 521 SIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNLQMEISNKKLQNMMMQLRQIIDST 580
Query: 1309 LLNY-PYF--SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365
L Y PY DL+ + L+K+ GKL IL +++ L GH+VL++S +LD++E++
Sbjct: 581 FLFYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCD 640
Query: 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1425
RIDG+ + E R+ + FNS IFLLS RAAG G+NL ADTV+++D D
Sbjct: 641 LNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSD 700
Query: 1426 PNPKNEEQAVARAHRIGQKREVKVIY 1451
NP+ + QA+ R HRIGQ+ V ++Y
Sbjct: 701 WNPQVDLQAMDRCHRIGQESPV-IVY 725
Score = 39 (18.8 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 1521 HEERRMTLETLLHDEERYQETVHDVPSL-QEVNRMIARSEDEVELFDQMDE 1570
H E +TLETLL + Q +P L E ++++ S+ V + D +++
Sbjct: 589 HPED-LTLETLLKTSGKLQILQKLIPPLISEGHKVLIYSQF-VNMLDLIED 637
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 464 (168.4 bits), Expect = 6.8e-65, Sum P(3) = 6.8e-65
Identities = 121/335 (36%), Positives = 176/335 (52%)
Query: 989 VMRQPSMLRAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
V QP L + L+ YQ+VG+ W+ LY KL+GILADEMGLGKT QV+A A L+E +
Sbjct: 537 VTEQPKTLASDVQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFALLLE-Q 595
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ-EVAALKFNVLVT 1106
G++GPHL++VP++ L NW EL ++ PS+ Y G++ +R+ + E +K+++LVT
Sbjct: 596 GHHGPHLVVVPSSTLENWLRELARFCPSLRVEPYYGSQQERANIREAIEENEIKYDILVT 655
Query: 1107 TYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
TY+ DRS L ++ + DE +K+R S + L RLLLTGTPLQN
Sbjct: 656 TYQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQN 715
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
+ P +FD+ D F K PT +AD + K+ I R +
Sbjct: 716 NLKELVSLLAFILPNMFDSDM---DDLDVIF-KAKPTADADIEQALLSKQRI--SRAKTM 769
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ-K 1282
+ PF+LRRR V LP K I+ C++S Q IY+ A + D+KR + K
Sbjct: 770 MTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSK 829
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD 1317
N + + M+LRK NH LL ++ D
Sbjct: 830 NDEESDGKSLSAGHVLMQLRKAANHALLFRKFYDD 864
Score = 306 (112.8 bits), Expect = 6.8e-65, Sum P(3) = 6.8e-65
Identities = 120/375 (32%), Positives = 180/375 (48%)
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRC----MELRKTCN-HPLL-NYPYFSDLS-KDFLVKS 1326
+DEK + I Q + YK N + ME+ H L ++P + KD
Sbjct: 863 DDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMSDFELHRLCRSFPTLQSYTLKDDPWMD 922
Query: 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386
GK+ +L +L K++ G R+LLFS T++LDILE+ L ++ Y R+DG+T +E R+
Sbjct: 923 SGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDI 982
Query: 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446
I F+ + D +FLLS +A G G+NL A+ VI+YD NP ++ QA RAHR+GQ RE
Sbjct: 983 IDQFHKEE-DVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVRE 1041
Query: 1447 VKVIYMEAVVDK-ISSH-QKEDELRSGGTVDLEDDLAGKDRY-IGSIEGLIRNNIQQYKI 1503
V VI + + D I + QK + + L D GKDR IG E L++
Sbjct: 1042 VTVIRL--ITDNTIEEYIQKLANTKLALDMSLSSD--GKDREEIG--ERLVQ-------- 1087
Query: 1504 DMADEVINAGRFDQRTTHEERRMTLETLLHDEERY---QETVHDVPSLQEVNRMIARSED 1560
DM DE N T E + + + +ET VP E ++ S +
Sbjct: 1088 DMLDEENNGNNTKPEITGNESDGEFKVSSSNNSKQTDAEETNTGVPL--EGSQ--PNSVE 1143
Query: 1561 EVELFDQMDEEFGWIEEMTRYDQVP---KWLRASTKEVNA-TIANLSKKPSKNILFGSNI 1616
+ +L D DE+ EM + + V K LR + K N T +N + SK+ N
Sbjct: 1144 KTDLADG-DEKANIKTEM-KSETVEGDNKELRETMKGENVQTDSNAAVPSSKSSTEEPNE 1201
Query: 1617 GVDSGEIETERKRGP 1631
V SG ++ + + P
Sbjct: 1202 SVLSGHLDLDTEASP 1216
Score = 51 (23.0 bits), Expect = 1.1e-37, Sum P(4) = 1.1e-37
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTM---TKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
+S GK +L++L++ + LLF KL + ++ +Q Q Y+ + E
Sbjct: 833 ESDGKSLSAGHVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEEQ--YKNANEQYIYE 890
Query: 1382 DRESAIVDFNSH 1393
D E + DF H
Sbjct: 891 DME-VMSDFELH 901
Score = 44 (20.5 bits), Expect = 6.8e-65, Sum P(3) = 6.8e-65
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 558 SSNVQSLPKEEAYAGDDKAAVSP-VGQGMSAVTKEPAPVVVP 598
+S+ S P AY+ D AA++ G + +P P P
Sbjct: 83 TSSYASTPMSNAYSRDAPAAINNNFGYSYVGQSSQPVPSYNP 124
Score = 43 (20.2 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 17/84 (20%), Positives = 38/84 (45%)
Query: 790 LCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNR-GVAKYHER 848
L +QR+ + + T +R ++ + ++ KK I + + N+ + +
Sbjct: 757 LLSKQRISRAKTMMTPF-VLRRRKNQVLNDLPKKTQ----IIEHCKLSENQLEIYNRYAA 811
Query: 849 ILREFSKRKDDDRNKRMEALKNND 872
+ + R+DD RNKR + + +D
Sbjct: 812 LQKNQQLRRDDKRNKRSKNDEESD 835
Score = 42 (19.8 bits), Expect = 1.1e-37, Sum P(4) = 1.1e-37
Identities = 29/136 (21%), Positives = 50/136 (36%)
Query: 1756 SLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTH-----DRDEGEDEQVLQPKIKRKRSIR 1810
SLS D E GE V +D + +G+ T + +GE + K+ +
Sbjct: 1070 SLSSDGKDREEIGERLVQ--DMLDEENNGNNTKPEITGNESDGEFKVSSSNNSKQTDAEE 1127
Query: 1811 VRPRHTVERPEERSCTDTPLHRGDSSL-LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQ 1869
+E + S T L GD + +M ++ + GE+ +
Sbjct: 1128 TNTGVPLEGSQPNSVEKTDLADGDEKANIKTEMKSETVEGDNKELRETMKGENVQTDSNA 1187
Query: 1870 SEPSSKSRRNLPSRKI 1885
+ PSSKS P+ +
Sbjct: 1188 AVPSSKSSTEEPNESV 1203
Score = 37 (18.1 bits), Expect = 3.7e-64, Sum P(3) = 3.7e-64
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 845 YHERILREFSKRKDDDRNKRME 866
Y+ L + KRK D N + E
Sbjct: 4 YNSNYLSDNGKRKFSDENPQSE 25
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 467 (169.5 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 108/236 (45%), Positives = 146/236 (61%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 678 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 736
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 737 TSG-----------FLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILL 785
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 786 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 845
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 846 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 901
Score = 297 (109.6 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 991 RQPSML---RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + + LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 465 KQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 523
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W P ++ + Y+G R+ + + E LKFN
Sbjct: 524 QLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFN 583
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145
+L+TTYE ++ D+S L ++W +I +DEA R+K+ +S+L + L
Sbjct: 584 ILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTL 626
Score = 58 (25.5 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E R PL GD L F++ N +
Sbjct: 964 GAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN-FSNMDED 1022
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P S+ RR
Sbjct: 1023 DIELEP--ERNSRNWEEIIPESQRRR 1046
Score = 52 (23.4 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 23/111 (20%), Positives = 42/111 (37%)
Query: 560 NVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQA-PVSSVKSDQEVEC 618
+V++ E + + DD + S G G S+ + G + ++ S +S+ E +
Sbjct: 9 SVRNSSGESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDT 68
Query: 619 GLLRTQQQSDFPADRGKSV---APQVSACDAVQVKKPAQATTALQPKDVGA 666
+ Q Q+ P G +P + A V K Q D G+
Sbjct: 69 SREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGS 119
Score = 43 (20.2 bits), Expect = 4.6e-63, Sum P(5) = 4.6e-63
Identities = 15/69 (21%), Positives = 27/69 (39%)
Query: 547 ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAP 606
ES + S + S K++ A KA S + ++ V+ +++QQ
Sbjct: 53 ESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKA 112
Query: 607 VSSVKSDQE 615
SS +E
Sbjct: 113 ASSDSGSEE 121
Score = 42 (19.8 bits), Expect = 2.4e-62, Sum P(5) = 2.4e-62
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGE---IAVSGDS 1776
LTQ + P P K L+ R L K + +L E +A +G+S
Sbjct: 1276 LTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNS 1323
Score = 39 (18.8 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 855 KRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
K+KD + + ++ DVE Y Q + D ++Y ++ + + +
Sbjct: 350 KKKDQETKRWLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 397
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 467 (169.5 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 108/236 (45%), Positives = 146/236 (61%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 678 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 736
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 1333
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 737 TSG-----------FLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILL 785
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 786 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 845
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 846 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 901
Score = 297 (109.6 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 991 RQPSML---RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
+QPS + + LRDYQ+ GL W+ + + ILADEMGLGKT+Q ++ + YL
Sbjct: 465 KQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 523
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFN 1102
YGP L++VP + L +W+ E+ W P ++ + Y+G R+ + + E LKFN
Sbjct: 524 QLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFN 583
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145
+L+TTYE ++ D+S L ++W +I +DEA R+K+ +S+L + L
Sbjct: 584 ILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTL 626
Score = 58 (25.5 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 1793 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 1852
G +E +P+ + + + ++R E R PL GD L F++ N +
Sbjct: 964 GAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN-FSNMDED 1022
Query: 1853 DTEMKAHGESNSLRHDQSEPSSKSRR 1878
D E++ E NS ++ P S+ RR
Sbjct: 1023 DIELEP--ERNSRNWEEIIPESQRRR 1046
Score = 52 (23.4 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 23/111 (20%), Positives = 42/111 (37%)
Query: 560 NVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQA-PVSSVKSDQEVEC 618
+V++ E + + DD + S G G S+ + G + ++ S +S+ E +
Sbjct: 9 SVRNSSGESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESESDT 68
Query: 619 GLLRTQQQSDFPADRGKSV---APQVSACDAVQVKKPAQATTALQPKDVGA 666
+ Q Q+ P G +P + A V K Q D G+
Sbjct: 69 SREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGS 119
Score = 43 (20.2 bits), Expect = 4.6e-63, Sum P(5) = 4.6e-63
Identities = 15/69 (21%), Positives = 27/69 (39%)
Query: 547 ESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAP 606
ES + S + S K++ A KA S + ++ V+ +++QQ
Sbjct: 53 ESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKA 112
Query: 607 VSSVKSDQE 615
SS +E
Sbjct: 113 ASSDSGSEE 121
Score = 42 (19.8 bits), Expect = 2.5e-62, Sum P(5) = 2.5e-62
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGE---IAVSGDS 1776
LTQ + P P K L+ R L K + +L E +A +G+S
Sbjct: 1277 LTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNS 1324
Score = 39 (18.8 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 855 KRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
K+KD + + ++ DVE Y Q + D ++Y ++ + + +
Sbjct: 350 KKKDQETKRWLKNASPEDVEYYN-----CQQELTDDLHKQYQIVERIIAHSNQ 397
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 665 (239.2 bits), Expect = 6.3e-64, P = 6.3e-64
Identities = 213/696 (30%), Positives = 350/696 (50%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILA-DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
TL+ +Q+ G+ W++ Y +N +L D+MGLGKT+Q ++ ++YL +G GP L++ P
Sbjct: 50 TLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCP 109
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAK----DQRSRLF-----SQEVAALKFNVLVTTYE 1109
+V W SE++++ P++ + YVG K D R ++ S + L F+VL+TTY+
Sbjct: 110 LSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYD 169
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL-DRYRCQRRLLLTGTPLQNDXXXX 1168
+ D+ LS++ W+Y IIDEAQR+K+ SVL L +++ RRLL+TGTP+QN+
Sbjct: 170 IALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTEL 229
Query: 1169 XXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228
P VF D F F++ G + D + +K+ L IL FM
Sbjct: 230 WALMHFCMPLVFGTL----DQFLSAFKETGDGLSGLD--VSNDKETY--KSLKFILGAFM 281
Query: 1229 LRRR----VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
LRR +E LPP + + + ++Q IY T LR ++ ++ +
Sbjct: 282 LRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIY-----TSILR---KELPGLLELSS 333
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL---SKDFLVKSCGKLWILDRILIKLQ 1341
+ +L N ++LRK C+HP L +P + LV++ GKL +LD++L +L
Sbjct: 334 --GGSNHTSLQNIVIQLRKACSHPYL-FPGIEPEPFEEGEHLVQASGKLLVLDQLLKRLH 390
Query: 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH-----DSD 1396
+GHRVLLFS MT LDIL+++++ R+ Y R+DG+ E+R +AI +F++ DS+
Sbjct: 391 DSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSE 450
Query: 1397 -----CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
F+F++S RA G GLNL +ADTVI Y+ D NP+ ++QA+ RAHRIGQ V I
Sbjct: 451 VDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSIN 510
Query: 1452 M--EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1509
+ E V+++ + E +L+ V + D++ K+ G + L V
Sbjct: 511 LVTEHSVEEVILRRAERKLQLSHNV-VGDNMEEKEEDGGDLRSL---------------V 554
Query: 1510 INAGRFDQRTTHEERRMTLETLLHDE--ERYQETVHDVPSLQEVNRMIARSEDEV---EL 1564
RFD H E L+ + E+ +V +E R S D +
Sbjct: 555 FGLQRFDPEEIHNEESDNLKMVEISSLAEKVVAIRQNVEPDKEERRFEINSSDTLLGNTS 614
Query: 1565 FDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIE 1624
+D E ++E + V K A+ + I L + KN+ N+ +++ +
Sbjct: 615 SASLDSE---LDEASYLSWVEKLKEAARSSKDEKIIELGNR--KNLSEERNLRIEAARKK 669
Query: 1625 TERKR----GPKGKKYPNYKE--VDDEIGEYSEASS 1654
E K+ G G + + +E + D++ S+A S
Sbjct: 670 AEEKKLATWGAHGYQSLSVEEPILPDDVDSSSDAGS 705
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 419 (152.6 bits), Expect = 8.6e-64, Sum P(4) = 8.6e-64
Identities = 118/333 (35%), Positives = 186/333 (55%)
Query: 1217 IHRLHQILEPFMLRRRVEDV-EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
I RLHQ+L P +LRR +DV + +PPK ++LR MS+ Q +Y KA T
Sbjct: 422 ISRLHQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVY---KAVITNNYQVLT 478
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL--NY-PYFSDLSKDF--LVKSCGKL 1330
+KR AK+ +N M+LR+ C+HP L ++ P F D ++ F L+++ GKL
Sbjct: 479 KKR--------DAKI----SNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKL 526
Query: 1331 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390
+LD++++KL+ GHRVL+++ L +LE+Y ++ Y RIDG S +R+ I F
Sbjct: 527 QLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRF 586
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
N+ +S+ F FLLS RA G G+NL +ADTVIIYD D NP + QA+AR HR+GQ +V +I
Sbjct: 587 NAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKV-MI 645
Query: 1451 YMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYI-GSIEGLIRNNIQQYKIDMADEV 1509
Y ++ K + ++ E+ + LE + GK ++ +I+ ++ + DE
Sbjct: 646 YR--LIHKGTVEERMMEITKNKML-LEHLVVGKQHLCQDELDDIIKYGSKELFSEENDEA 702
Query: 1510 INAGR--FDQRTTHE--ERRMT--LETLLHDEE 1536
+G+ +D + +R +E L DEE
Sbjct: 703 GRSGKIHYDDAAIEQLLDRNHVDAVEVSLDDEE 735
Score = 335 (123.0 bits), Expect = 8.6e-64, Sum P(4) = 8.6e-64
Identities = 82/236 (34%), Positives = 126/236 (53%)
Query: 962 RFLEMNAPRDGSSVNKYYSLAHAVNERVMRQ----PSMLRAGTLRDYQIVGLQWMLSLYN 1017
RF ++N+ S +KY + + N +Q P L GTL YQ+ GL ++ ++
Sbjct: 188 RFKDINS---SSRRDKY--VENERNREEFKQFDLTPEFL-TGTLHTYQLEGLNFLRYSWS 241
Query: 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077
K N ILADEMGLGKT+Q +A +A L F+ N PHL++ P + + NW+ E W P ++
Sbjct: 242 KKTNVILADEMGLGKTIQSIAFLASL--FEENLSPHLVVAPLSTIRNWEREFATWAPHMN 299
Query: 1078 CIYYVGAKDQRSRLFSQEV-----AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ 1132
+ Y G + R ++ E KF+VL+TTYE + S LS + W +IIDE
Sbjct: 300 VVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYEMVHPGISVLSPIKWTCMIIDEGH 359
Query: 1133 RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHD 1188
R+K+++S L L ++ + +LLTGTPLQN+ + F + + F D
Sbjct: 360 RLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSLEKFQD 415
Score = 51 (23.0 bits), Expect = 8.6e-64, Sum P(4) = 8.6e-64
Identities = 24/104 (23%), Positives = 46/104 (44%)
Query: 1561 EVELFDQMDEEFGWIEEMTRYDQVPKWLRAST-KEVNATIANLSKKPSKNILFGSNIGVD 1619
EV L D+ + +F ++ ++ V A+ +E A N S + + ++ D
Sbjct: 728 EVSLDDEEETDFLKNFKVASFEYVDDENEAAALEEAQAIENNSSVRNADRTSHWKDLLKD 787
Query: 1620 SGEIETERKRGPKGKKYPNYKEV---DDEIGEYSEASSDERNGY 1660
E++ + GK+ N K+V +D++ E S DE + Y
Sbjct: 788 KYEVQQAEELSALGKRKRNGKQVMYAEDDLDGLEEIS-DEEDEY 830
Score = 50 (22.7 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 46/238 (19%), Positives = 89/238 (37%)
Query: 1283 NPIYQAKVYKTLNNR-CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWIL-DRILIKL 1340
NP+Y K Y +N + L+ +P N F ++ K I D +L+ +
Sbjct: 916 NPLYM-KTYDEINKYGILFLKHIAENPTDNSTNFKVITAMVYADGVPKEGISSDELLVSM 974
Query: 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVD-FNSHDSD 1396
++L + LD + V Y +G S E+ + ++ + H
Sbjct: 975 TF----MMLVKEKCQFLDNHPTAPVFSNYVISKYNLRNGAFSKEEHDRILIPAVSKHGYG 1030
Query: 1397 CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVV 1456
++ ++ G + D I + PD + R+ +K E + Y A
Sbjct: 1031 RWVAIVEDEEIGFQ-EVACKDLNIPFPPDTKSARKRICDHVGKRV-KKMEDAIKYEYA-- 1086
Query: 1457 DKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA---DEVIN 1511
+KI + Q + E + VD E ++ D + +Q +++MA D+ +N
Sbjct: 1087 EKILAEQAKAETKGTSFVDAEKEMLKNDPITSKKNSATAVDNKQGRVEMAQSYDQSVN 1144
Score = 48 (22.0 bits), Expect = 8.6e-64, Sum P(4) = 8.6e-64
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 1794 EDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT----PLHRGDSSLLPFQMDNKYPAQ 1849
E+E+ +P+ R+R +PR TV RP + D PL G+ L N+
Sbjct: 841 EEEEADEPEAARQR----KPR-TVTRPYRKRARDNSEEIPLMEGEGRYLMVLGFNETERD 895
Query: 1850 LRTDTEMKAHGESN 1863
+ T K +G N
Sbjct: 896 IFLRT-FKRYGAGN 908
Score = 43 (20.2 bits), Expect = 1.6e-24, Sum P(4) = 1.6e-24
Identities = 27/134 (20%), Positives = 59/134 (44%)
Query: 1430 NEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGS 1489
N+E+ ++R H++ ++ + + + DK+ +KE LR VD+ K+ Y
Sbjct: 417 NKEEQISRLHQMLAPHLLRRLKKDVLKDKVPP-KKELILR----VDMSSQQ--KEVY--- 466
Query: 1490 IEGLIRNNIQQYKIDMADEVINA-GRFDQRTTHEERRMTLETLLHD-EERYQETVHDVPS 1547
+ +I NN Q ++ N + Q +H E D E + + +
Sbjct: 467 -KAVITNNYQVLTKKRDAKISNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGK 525
Query: 1548 LQEVNRMIARSEDE 1561
LQ +++M+ + +++
Sbjct: 526 LQLLDKMMVKLKEQ 539
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 703 (252.5 bits), Expect = 1.5e-63, Sum P(5) = 1.5e-63
Identities = 223/693 (32%), Positives = 348/693 (50%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
+LR+YQ G+ W+L Y N N ILADEMGLGKTVQ + ++ + ++ G +GP L++VP
Sbjct: 1196 SLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRIYDY-GIHGPFLVVVPL 1254
Query: 1060 AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-------AA-------LKFNVLV 1105
+ + NW E W ++ I Y G+ R L EV A +K + L+
Sbjct: 1255 STIQNWVREFETWT-DMNAIVYHGSAYAREVLQQYEVFYDKRHCGAKNWKKNFVKIDALI 1313
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPLQND 1164
TT+E ++ D L K+ W+ +IDEA R+K+R +L L +R + R+LLTGTPLQN+
Sbjct: 1314 TTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNN 1373
Query: 1165 XXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P+ FDN F + F + DD + +L +IL
Sbjct: 1374 IDELFSLLNFLHPQQFDNSATFLEQFG--------SCQTDDQ----------VQKLQEIL 1415
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
+P MLRR EDVE SL PK ++ ++S +Q Y I +R
Sbjct: 1416 KPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAIL------------ERNFSH-- 1461
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHP-LLN-------------YPYFSD--LSKDFLVKSCG 1328
+ + +L N MELRK CNHP L+N +P + + L+ L+++ G
Sbjct: 1462 LCKGTSAPSLMNVMMELRKCCNHPFLINGAEEAIMNDFRLAHPDWDEETLAHKALIQASG 1521
Query: 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388
K+ +++++L KL++ GH+VL+FS M K+LD+LEE+L + RIDG + R++AI
Sbjct: 1522 KVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQAAID 1581
Query: 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448
F+ +SD F+FLL RA G G+NL +ADTVII+D D NP+N+ QA AR HRIGQK+ VK
Sbjct: 1582 RFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVK 1641
Query: 1449 VIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADE 1508
V + I+S+ E E+ ++ L D A + S L K D+ +E
Sbjct: 1642 VYRL------ITSNTYEREMFDKASLKLGLDKA----VLQSTTALKAEGTALSKKDV-EE 1690
Query: 1509 VINAGRF-----DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIAR-----S 1558
++ G + ++ + + +ET+L +R +T+ + + Q+ + A+ S
Sbjct: 1691 LLKKGAYGSIMDEENESSKFNEEDIETIL---QRRTQTI-TLEAGQK-GSLFAKATFNSS 1745
Query: 1559 EDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGV 1618
++ + D D EF W + + QV +T + I +K +K + G
Sbjct: 1746 HNKGDDIDIDDPEF-WTKWAEKA-QVDVEKATATPDGRELIIEEPRKRTKRFEENKDEGD 1803
Query: 1619 DSGEIET-ERKRGPKGKKYPNYKEVDDEIGEYS 1650
G E+ RKRG K+ + +DE G+YS
Sbjct: 1804 SDGSEESGNRKRGAAEKR--KRRRGNDEDGDYS 1834
Score = 59 (25.8 bits), Expect = 1.5e-63, Sum P(5) = 1.5e-63
Identities = 29/120 (24%), Positives = 46/120 (38%)
Query: 548 SNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKE-PAPVVVPGKEEQQAP 606
SNG V ++ +++ KEE D V Q A T+E P P V +E + P
Sbjct: 739 SNGTPLDQVEQNDYENIEKEEPQVSVDPEPVEVEAQQEPADTEEYPIPSVGTIEEPAEEP 798
Query: 607 VSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSAC---DAVQVKKPAQATTALQPKD 663
+ E Q + AD ++ A + VQ + +A++A KD
Sbjct: 799 AEEPVEEPEPMDDSSPVDQSTPVKADDIENFAGVEETFGEEEEVQDEDDDEASSAKSSKD 858
Score = 55 (24.4 bits), Expect = 1.5e-63, Sum P(5) = 1.5e-63
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 788 VRLCERQRVELMRQVQTSQKA-MREKQLKSISQWRKKLLEAHW 829
+ + +VEL R+ Q A +REKQ +W+K W
Sbjct: 1149 IEMIPADKVELWRERQVIDPAKIREKQRPEPEEWKKMSTSKVW 1191
Score = 48 (22.0 bits), Expect = 1.5e-63, Sum P(5) = 1.5e-63
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 392 VAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPE 427
+A+ G+PP H P ++ G +P PV N P+
Sbjct: 135 MAMYGGVPPPHYPSSNGPSQQGY-RPGPVTNGPPPQ 169
Score = 48 (22.0 bits), Expect = 1.5e-63, Sum P(5) = 1.5e-63
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 204 KQMEQPQQQVSDQKGEPKPPSQQTLG----GQGMAANIIRPMQAAQ 245
+ M P QQV Q +P PP+++ G Q AA AAQ
Sbjct: 66 QHMAPPPQQVPPQPAQP-PPAKKARGKSKKAQAEAAAAAAAAAAAQ 110
Score = 47 (21.6 bits), Expect = 1.8e-63, Sum P(5) = 1.8e-63
Identities = 24/75 (32%), Positives = 29/75 (38%)
Query: 375 QQFSVHGRDNQVPSRQPVAIGN-GLPPI-HPPQTSLNMTPGVDQPLPVKNSSGPENSQMQ 432
QQ R Q + Q A G G P + PQ S P Q P +GP QM+
Sbjct: 183 QQMYHQQRAQQQQAGQQQAQGPPGYGPYGYAPQASTGYPPPPSQQSPYAPQAGPP-PQMR 241
Query: 433 YLRQLNRSSPQSAIP 447
+ Q S Q A P
Sbjct: 242 H--QYPPHSQQQAPP 254
Score = 47 (21.6 bits), Expect = 2.5e-62, Sum P(5) = 2.5e-62
Identities = 24/100 (24%), Positives = 38/100 (38%)
Query: 580 PVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQ--SDFPADR---- 633
P G T P + P + P SS ++DQE++ + QQ+ D P +
Sbjct: 627 PSSSGYQEPTVAPEAIPSPSVSDPIMPQSS-QNDQELQA--ISDQQEILEDVPKEEPIIE 683
Query: 634 --------GKSVAPQVSACDAVQVKKPAQATTALQPKDVG 665
+ P D V+ K+ Q+T+ L D G
Sbjct: 684 EDEPKYEYSQETIPVEELKDEVEFKEDQQSTSNLLEDDTG 723
Score = 44 (20.5 bits), Expect = 2.5e-63, Sum P(4) = 2.5e-63
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 218 GEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
G P PPSQQ G + MQ AQ +Q
Sbjct: 264 GGP-PPSQQQQQQGGGPVTAPQSMQMAQQEQ 293
Score = 44 (20.5 bits), Expect = 2.5e-63, Sum P(4) = 2.5e-63
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSI 250
EK QQ + G P +QQ A + Q AQHQQ++
Sbjct: 479 EKPSPYQQQYNGMENGSGNPYAQQQQQHPMYAQYQQQQQQHAQHQQNM 526
Score = 43 (20.2 bits), Expect = 3.1e-63, Sum P(4) = 3.1e-63
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 209 PQQQVSDQKGEPKPPSQQTLGGQGMAAN 236
PQQ S + +P QQ G G+ +
Sbjct: 554 PQQHPSQHQTQPNQQQQQHPSGYGIGVS 581
Score = 39 (18.8 bits), Expect = 8.2e-63, Sum P(4) = 8.2e-63
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 218 GEPKPPSQQT 227
G P PPSQQ+
Sbjct: 219 GYPPPPSQQS 228
Score = 39 (18.8 bits), Expect = 8.2e-63, Sum P(4) = 8.2e-63
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 403 PPQTSLNMTPGVDQPLPVKNSSGPENSQMQY 433
PPQ S GV Q P + + P Q Q+
Sbjct: 24 PPQQSQQSQQGVPQRYPGQPMN-PYEQQQQH 53
Score = 38 (18.4 bits), Expect = 1.0e-62, Sum P(4) = 1.0e-62
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 207 EQPQQQVSDQKGEPKPPS--QQTLGGQGMAANIIRPMQAAQH 246
E P K EP+ PS QQ G + Q QH
Sbjct: 465 ESPVPNAPQVKMEPEKPSPYQQQYNGMENGSGNPYAQQQQQH 506
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 435 (158.2 bits), Expect = 1.8e-63, Sum P(3) = 1.8e-63
Identities = 105/277 (37%), Positives = 155/277 (55%)
Query: 990 MRQPSMLRAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+ QPS+L L+ YQ +GL W+ L+ + LNGILADEMGLGKT+Q +A +A++ + +G
Sbjct: 421 IEQPSVLNQSLELKPYQKIGLNWLALLHKHGLNGILADEMGLGKTIQAIAFLAHIYQ-EG 479
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCI-YYVGAKDQRSRLFSQ-EVAALKFNVLVT 1106
+ GPHLI+VP + L NW E++ W P ++ + YYVG+++ R L + + FNV+VT
Sbjct: 480 DRGPHLIVVPASTLDNWIREVNLWCPELNVLFYYVGSQEDRKHLRADISNRVVDFNVIVT 539
Query: 1107 TYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
TY + DRS KV Y I DE +K+ SV + L R + RLLLTGTP+QN
Sbjct: 540 TYNCAISSSDDRSLFRKVKLNYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQN 599
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
+ P +F + + + F + T A++ T +K I H QI
Sbjct: 600 NLLELMSLLNFVMPHMFSSSTSE---IRRMFSSKAKT--AEEQ--STYEKERIAHA-KQI 651
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
++PF+LRR ++V LPPK + C MS Q +Y
Sbjct: 652 IKPFILRRVKDEVLKQLPPKKDHIELCAMSEKQEQLY 688
Score = 315 (115.9 bits), Expect = 1.8e-63, Sum P(3) = 1.8e-63
Identities = 78/190 (41%), Positives = 112/190 (58%)
Query: 1312 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
Y + SD D + GK +L+R+L L+ G RV+LFS T +LDILE +L+ Q
Sbjct: 774 YSHVSDFKLDMDQILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHR 833
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y R+DG T + DR I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 834 YIRLDGKTQISDRIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 892
Query: 1431 EEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIG 1488
++QA R HR+GQ REVKVI + + +++ + +L+ LE D+ D +G
Sbjct: 893 DKQAEDRCHRVGQTREVKVIKLISKGTIEESMLKMNQQKLK------LEQDMTAAD--LG 944
Query: 1489 SIEGLIRNNI 1498
EG I +I
Sbjct: 945 E-EGAIPADI 953
Score = 44 (20.5 bits), Expect = 1.8e-63, Sum P(3) = 1.8e-63
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 792 ERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTA 837
ERQ + L+ ++Q + M +++L+ + L E +W +AR A
Sbjct: 184 ERQEM-LVEKLQNTFPGMDKEELRDV------LREHNWVFHEAREA 222
Score = 39 (18.8 bits), Expect = 5.9e-63, Sum P(3) = 5.9e-63
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 833 DARTARNRGVAKYHERI-LREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTS 886
+A R K+ + + S +D+ +++ A K N R +L+ + +S
Sbjct: 8 EAERTRELSYFKHRRGVHFLDVSSDSEDEVPRKVSASKENKAPRKDVILISEDSS 62
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 690 (248.0 bits), Expect = 3.2e-63, Sum P(2) = 3.2e-63
Identities = 188/529 (35%), Positives = 276/529 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ GL W+L + N+ N ILADEMGLGKT+Q + + Y + G GP LII P +
Sbjct: 386 LREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLS 444
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G+ R + E+ A +F ++TT+E
Sbjct: 445 TIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFE 503
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ +L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 504 MILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELF 563
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 564 SLLHFLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 605
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE L PK ++ ++ IQ Y R E + K Q
Sbjct: 606 RRLKEDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTN 655
Query: 1290 VYKTLNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILD 1334
V L N MELRK CNHP L Y P SD +++S GKL ++D
Sbjct: 656 V-PNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 714
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ D
Sbjct: 715 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 774
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 775 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR-- 831
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
+V + +S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 832 LVTR-NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIE 879
Score = 41 (19.5 bits), Expect = 3.2e-63, Sum P(2) = 3.2e-63
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1617 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 965 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 999
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 512 (185.3 bits), Expect = 5.2e-63, Sum P(5) = 5.2e-63
Identities = 106/269 (39%), Positives = 157/269 (58%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P ++R G LR+YQ+VGL WM++LY LNGILADEMGLGKT+Q ++L+A++ + +GP
Sbjct: 551 PFLIR-GQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGP 609
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLI+VP +V++NW+ E KW P++ + Y G +R+ + F+V +T+Y+ +
Sbjct: 610 HLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNCFHVCITSYKTVT 669
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + W+Y+I+DEAQ +K+ +S + L R +RRLLLTGTPLQN
Sbjct: 670 QDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLM 729
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P +F + F DWFS P G E +I RLH++L PF+LRR
Sbjct: 730 HFLMPTIFSSHDDFKDWFSNPLT--GMMEG------NMEFNAPLIGRLHKVLRPFILRRL 781
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
++VE LP K ++ C +S Q +YD
Sbjct: 782 KKEVEKQLPEKTEHIVNCSLSKRQRYLYD 810
Score = 269 (99.8 bits), Expect = 5.2e-63, Sum P(5) = 5.2e-63
Identities = 64/158 (40%), Positives = 91/158 (57%)
Query: 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386
CGKL L +L +L HR L+F+ M+K+LD+L+ +L Y R+DGTT +E R++
Sbjct: 1187 CGKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAM 1246
Query: 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446
+ FN+ D F F+LS R+ G G+NL ADTVI YD D NP + QA R HRIGQ R
Sbjct: 1247 MERFNA-DPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRN 1305
Query: 1447 VKV--IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 1482
V + + E +++ + + R G +L D AG
Sbjct: 1306 VSIYRLISERTIEENILRKATQKRRLG---ELAIDEAG 1340
Score = 132 (51.5 bits), Expect = 3.3e-23, Sum P(5) = 3.3e-23
Identities = 35/98 (35%), Positives = 49/98 (50%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
+I RLH++L PF+LRR ++VE LP K ++ C +S Q +YD +
Sbjct: 765 LIGRLHKVLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYD------------DF 812
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
RR K + + LN M+LRK CNHP L P
Sbjct: 813 MSRRSTKENLKSGNMMSVLNI-VMQLRKCCNHPNLFEP 849
Score = 60 (26.2 bits), Expect = 1.7e-41, Sum P(5) = 1.7e-41
Identities = 32/146 (21%), Positives = 59/146 (40%)
Query: 1429 KNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD--RY 1486
K E A+A+ K+ EA VD +K S D E D + +
Sbjct: 1376 KEMEVAMAKCEDEADVNAAKIAVAEANVDNAEFDEKSLPPMSNLQGDEEADEKYMELIQQ 1435
Query: 1487 IGSIEGLIRNNIQ-QYKIDMADEVINA-GRFDQRTTHEERRMTLETLLHDEERYQETVHD 1544
+ IE N ++ QYK + +E A DQ+ ++ + +T + D + + +
Sbjct: 1436 LKPIERYAINFLETQYKPEFEEECKEAEALIDQKREEWDKNLN-DTAVIDLDDSDSLLLN 1494
Query: 1545 VPSLQEVNRMIARSEDEVELFDQMDE 1570
PS + DE++ +D++D+
Sbjct: 1495 DPSTSADFYQSSSLLDEIKFYDELDD 1520
Score = 46 (21.3 bits), Expect = 5.2e-63, Sum P(5) = 5.2e-63
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 818 SQWRKKLLEAHWAIRDARTARN--RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVER 875
+ W L E W D RT N R +AK ++ ++ D+ +E +++
Sbjct: 238 THWDYLLEEVKWMAVDFRTETNTKRKIAK----VIAHAIAKQHRDKQIEIERAAEREIKE 293
Query: 876 YREM 879
R+M
Sbjct: 294 KRKM 297
Score = 43 (20.2 bits), Expect = 5.2e-63, Sum P(5) = 5.2e-63
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 1753 RPGSLSKRMP-DELEEGEIAVS-GDSHMDHQQSGSWTHDRDEGEDEQVLQPK--IKRKRS 1808
RP L + + D + + + V + + H + G T + D +L K + R +S
Sbjct: 1775 RPKELGQLVASDPISKKTMKVDLSHTELSHLRKGRMTTESQYAHDYGILTDKKHVNRFKS 1834
Query: 1809 IRV 1811
+RV
Sbjct: 1835 VRV 1837
Score = 40 (19.1 bits), Expect = 5.2e-63, Sum P(5) = 5.2e-63
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 585 MSAVTKEPAPVVVPGKEEQQA--PVSSVKSDQE 615
M+ +TKEP P P Q+ P+ D E
Sbjct: 147 MADLTKEPPPTPAPPPPIQKTMQPIEVKIEDSE 179
Score = 40 (19.1 bits), Expect = 5.2e-40, Sum P(4) = 5.2e-40
Identities = 28/132 (21%), Positives = 46/132 (34%)
Query: 1700 GGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSALEA--RPGSL 1757
GG+ + R + +N H EE+ I P + G+ A RP +
Sbjct: 925 GGFRFNRTAFVAKNPHT-EESEDEGVMRSRVLPKPINGTAQPLQNGNSIPQNAPNRPQTS 983
Query: 1758 SKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVR----- 1812
R + + +S D H + +D + P +KR++
Sbjct: 984 CIRSKTVVNTVPLTISTDRSGFHFNMANVGRGVVRLDDSARMSPPLKRQKLTGTATNWSD 1043
Query: 1813 --PRHTVERPEE 1822
PRH VE+ EE
Sbjct: 1044 YVPRHVVEKMEE 1055
Score = 37 (18.1 bits), Expect = 3.5e-39, Sum P(5) = 3.5e-39
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 1265 ATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300
AT T V + ++++ QK+ + +T NR E
Sbjct: 1653 ATTTTTVPQQQQQQQQQKSSKKKRNDNRTAQNRTAE 1688
Score = 37 (18.1 bits), Expect = 7.0e-15, Sum P(3) = 7.0e-15
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRC 1250
+ + ++P ++ +ED EGS + S++ C
Sbjct: 164 IQKTMQPIEVK--IEDSEGSNTAQPSVLPSC 192
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 689 (247.6 bits), Expect = 9.0e-63, Sum P(4) = 9.0e-63
Identities = 179/475 (37%), Positives = 252/475 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q + ++ + G +GP LII P +
Sbjct: 383 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LMGIHGPFLIIAPLS 441
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYE 1109
+ NW+ E W ++ I Y G++ R + E+ KF V++TT+E
Sbjct: 442 TITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQVVITTFE 500
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L K+ W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 501 MILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 560
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P+ F + AF + F L+TE++V +L IL+P ML
Sbjct: 561 SLLNFLEPQQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMML 602
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR +DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 603 RRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS----KGANQHN------ 652
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N D K DF ++++ GKL ++D
Sbjct: 653 -MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLID 711
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F D
Sbjct: 712 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 771
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 772 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 826
Score = 50 (22.7 bits), Expect = 9.0e-63, Sum P(4) = 9.0e-63
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 565 PKEEAYAGDDKAAVSPVGQGM-SAVTKEPAPVVVP----GKEEQQAPVSSVKSDQEVECG 619
PK D K++ P + +KE P V GK + + PV S+ DQ++
Sbjct: 82 PKAPKEPKDRKSSSEPGPRTRPKKSSKEQGPTPVEKKKKGKRKNEIPVDSLDLDQDLLSP 141
Query: 620 LLRTQQQSDFPADRGK 635
++ ++S AD K
Sbjct: 142 SAQSPEESAESADSQK 157
Score = 48 (22.0 bits), Expect = 9.0e-63, Sum P(4) = 9.0e-63
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 1657
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 968 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1000
Score = 39 (18.8 bits), Expect = 9.0e-63, Sum P(4) = 9.0e-63
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 203 EKQMEQPQQQVSDQKGEPKPP 223
+KQ E Q++V+ + +P+ P
Sbjct: 62 KKQKEPKQREVTKKARKPREP 82
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 691 (248.3 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 189/529 (35%), Positives = 281/529 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I P +
Sbjct: 154 LREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 212
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G++ R + E+ + KF+ ++TT+E
Sbjct: 213 TIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFE 271
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 272 MILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELF 331
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 332 SLLHFLEPGRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 373
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K QA
Sbjct: 374 RRLKEDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGG-GQAN 423
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L+N F + S DF ++++ GKL ++D
Sbjct: 424 VPNLLNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 482
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ D
Sbjct: 483 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPD 542
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 543 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR-- 599
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 600 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 647
Score = 42 (19.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 742 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 771
Score = 37 (18.1 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 1494 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 1532
+ N+ Y ++++ GR+ ++ T ++ T+L
Sbjct: 798 VEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTIL 836
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 549 (198.3 bits), Expect = 1.8e-62, Sum P(3) = 1.8e-62
Identities = 111/264 (42%), Positives = 163/264 (61%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 175 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 234
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 235 HMVLVPKSTLYNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 294
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 295 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 354
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 355 NFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRI 399
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQ 1256
DVE SLPPK I + +S +Q
Sbjct: 400 KTDVEKSLPPKKEIKVYLGLSKMQ 423
Score = 194 (73.4 bits), Expect = 1.8e-62, Sum P(3) = 1.8e-62
Identities = 51/155 (32%), Positives = 83/155 (53%)
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
++ AI FN+ +S FIF+LS RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIG
Sbjct: 558 KKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 617
Query: 1443 QKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGL 1493
QK+ V+V + E +V++ + D + + G +D + + K+ + I
Sbjct: 618 QKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHG 677
Query: 1494 IRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 1526
+ + ++ DE I R +++T R+
Sbjct: 678 ATHVFASKESELTDEDITTLLERGEKKTAEMNERL 712
Score = 38 (18.4 bits), Expect = 1.8e-62, Sum P(3) = 1.8e-62
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 1817 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 1845
+ER E+++ + L + G+SSL F+MD +
Sbjct: 698 LERGEKKTAEMNERLQKMGESSLRNFRMDTE 728
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 429 (156.1 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
Identities = 103/240 (42%), Positives = 146/240 (60%)
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L P +LRR +DV +PPK ++LR +S++Q Y KA T +
Sbjct: 492 ISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYY---KAIFTRNYQVLTK 548
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLN--YPYFSDLSKDF--LVKSCGKLW 1331
K Q + LNN MELRK C HP +L P D ++ F L++SCGKL
Sbjct: 549 KGGAQIS----------LNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQ 598
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
+LD++++KL+ GHRVL+++ +LD+LE+Y ++ Y RIDG +R+ I FN
Sbjct: 599 LLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFN 658
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
+ +S+ F FLLS RA G G+NL +ADTVIIYD D NP + QA+ARAHR+GQ +V +IY
Sbjct: 659 AKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKV-MIY 717
Score = 195 (73.7 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
Identities = 49/138 (35%), Positives = 74/138 (53%)
Query: 962 RFLEMNAPRDGSSVNKYYSLAHAVNERVMRQ----PSMLRAGTLRDYQIVGLQWMLSLYN 1017
RF ++N S + + H N R +Q P L+ G L YQ+ GL ++ ++
Sbjct: 236 RFKDVN-----SRTRRSKDVDHKRNPRDFQQFDHTPEFLK-GLLHPYQLEGLNFLRFSWS 289
Query: 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077
+ + ILADEMGLGKT+Q +AL+A L F+ N PHL+I P + L NW+ E W P ++
Sbjct: 290 KQTHVILADEMGLGKTIQSIALLASL--FEENLIPHLVIAPLSTLRNWEREFATWAPQMN 347
Query: 1078 CIYYVGAKDQRSRLFSQE 1095
+ Y G R+ + E
Sbjct: 348 VVMYFGTAQARAVIREHE 365
Score = 167 (63.8 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
Identities = 39/115 (33%), Positives = 61/115 (53%)
Query: 1085 KDQRSRLFSQEVAA--LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142
K ++S S E +KF+VL+T+YE I D + L + W+ +I+DE R+K+++S L
Sbjct: 376 KKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLF 435
Query: 1143 RDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKE 1197
L +Y R+LLTGTPLQN+ F + + F + F Q+E
Sbjct: 436 SSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 490
Score = 44 (20.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 717 LQKKRSENLKKISGILAVNLERKRIRPDLVL 747
L K + + KK SG ++ ++KRI+ D++L
Sbjct: 368 LSKDQKKIKKKKSGQISSESKQKRIKFDVLL 398
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 550 (198.7 bits), Expect = 3.8e-62, Sum P(3) = 3.8e-62
Identities = 112/268 (41%), Positives = 165/268 (61%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ + F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 358 NFLLPDVFNSAEDFDSWFD--------TKNCLGD----QK---LVERLHTVLKPFLLRRI 402
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
DVE SLPPK I + +S +Q Y
Sbjct: 403 KTDVEKSLPPKKEIKIYLGLSKMQREWY 430
Score = 300 (110.7 bits), Expect = 8.8e-35, Sum P(3) = 8.8e-35
Identities = 75/195 (38%), Positives = 107/195 (54%)
Query: 1205 DDWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
D W +T+ + ++ RLH +L+PF+LRR DVE SLPPK I + +S +Q +
Sbjct: 372 DSWFDTKNCLGDQKLVERLHTVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQR---E 428
Query: 1262 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYF 1315
W +D + ++ K L N M+LRK CNHP L PY
Sbjct: 429 WYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAEPGPPYT 479
Query: 1316 SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 1375
+D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLDILE+Y WR Y R+D
Sbjct: 480 TD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLD 536
Query: 1376 GTTSLEDRESAIVDF 1390
G T E+RE + DF
Sbjct: 537 GQTPHEEREEILKDF 551
Score = 191 (72.3 bits), Expect = 3.8e-62, Sum P(3) = 3.8e-62
Identities = 55/177 (31%), Positives = 90/177 (50%)
Query: 1361 EEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420
EE L+ ++++ G+ AI FN +S FIF+LS RA G G+NL SAD VI
Sbjct: 545 EEILKDFKIIFHEYQGSNE------AIEAFNIPNSSKFIFMLSTRAGGLGINLASADVVI 598
Query: 1421 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSG 1471
+YD D NP+ + QA+ RAHRIGQK+ V+V + E +V++ + D + + G
Sbjct: 599 LYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQG 658
Query: 1472 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 1526
+D + + K+ + I + + ++ DE I R +++T R+
Sbjct: 659 RLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGEKKTAEMNERL 715
Score = 42 (19.8 bits), Expect = 1.4e-46, Sum P(3) = 1.4e-46
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 1514 RFDQRTTHEERRMTLET---LLHDEERYQETVH--DVPS 1547
R D +T HEER L+ + H+ + E + ++P+
Sbjct: 534 RLDGQTPHEEREEILKDFKIIFHEYQGSNEAIEAFNIPN 572
Score = 37 (18.1 bits), Expect = 3.8e-62, Sum P(3) = 3.8e-62
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1817 VERPEERSCT-DTPLHR-GDSSLLPFQMD 1843
+ER E+++ + L + G+SSL F+MD
Sbjct: 701 LERGEKKTAEMNERLQKMGESSLRNFRMD 729
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 686 (246.5 bits), Expect = 5.8e-62, Sum P(7) = 5.8e-62
Identities = 184/532 (34%), Positives = 278/532 (52%)
Query: 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057
A LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I
Sbjct: 1009 ANALREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 1067
Query: 1058 PNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVT 1106
P + + NW+ E W ++ + Y G++ R + + E+ A KF+ ++T
Sbjct: 1068 PLSTIPNWEREFRTWT-ELNVVVYHGSQASRKTIQAYEMYYRDTQGRIIKGAYKFHAVIT 1126
Query: 1107 TYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXX 1166
T+E I+ D +L V W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1127 TFEMILTDCPELRNVPWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVE 1186
Query: 1167 XXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226
P+ F + F F L+TE++V +L IL+P
Sbjct: 1187 ELFSLLNFLEPDRFPSESTFMQEFGD---------------LKTEEQV---QKLQGILKP 1228
Query: 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY 1286
MLRR EDVE +L PK ++ ++ +Q Y I +
Sbjct: 1229 MMLRRLKEDVEKNLAPKEETIIEVELTNVQKKYYRAILEKNFAFLSKSGAGGGSGGGG-- 1286
Query: 1287 QAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF---------------LVKSCGKLW 1331
+ V LN MELRK CNHP L + ++F ++++ GKL
Sbjct: 1287 GSNVPNLLNTM-MELRKCCNHPYLINGAEEKIMEEFRETHPLDQPEFHLQAMIQAAGKLV 1345
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
++D++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+
Sbjct: 1346 LIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1405
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
DSD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 1406 RPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IY 1464
Query: 1452 MEAVVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1465 R--LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENAANGVQQLSKKEIE 1513
Score = 61 (26.5 bits), Expect = 5.8e-62, Sum P(7) = 5.8e-62
Identities = 35/144 (24%), Positives = 65/144 (45%)
Query: 1763 DELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQV-LQPK--IKRKRSI-RVRPRH-TV 1817
D EE A+S + +++ + + E ++E++ ++ K + K + +V P V
Sbjct: 2261 DVKEEKSEALSPKKEVKNEEDENGLGPKQEPKEEKMEVEEKDVTEFKTDVEQVCPVDGMV 2320
Query: 1818 ER-PEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSL-RHDQSEPSSK 1875
E+ P ++ TDT D + Q + + P + TE + E + D+SE SS+
Sbjct: 2321 EKKPMDQEPTDTLPSSEDKNA---QDEKELPTGNKLSTEKASEDEEEKMDEDDKSEKSSQ 2377
Query: 1876 SRRNLPSRKIANAPKSRASLKTGR 1899
+ S + +S ASL T R
Sbjct: 2378 AEVGALSERKNFDEESNASLSTAR 2401
Score = 58 (25.5 bits), Expect = 5.8e-62, Sum P(7) = 5.8e-62
Identities = 31/142 (21%), Positives = 50/142 (35%)
Query: 318 QQVTSPTI--AGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXISL- 374
QQV S T+ +G+ P+++ + P +S + ++ A
Sbjct: 305 QQVPSNTVNSSGQYPPYSSYGNLNQGLANTSGMSPNLSLTTSSNSNPNAPVTQVQRYPAP 364
Query: 375 ---QQFSVHGRDNQVPSRQPVAIGN-GLPPIHPPQTSLNMTPGVDQPLPV----KNSSGP 426
Q++ G +QP+ + P+HP Q P + Q LP SS P
Sbjct: 365 AGPQRYPTPGGQQGPLHQQPIHVNQINTQPMHPAQNQATAQPKLQQHLPPPPQGSYSSPP 424
Query: 427 ENSQMQYLRQ-LNRSSPQSAIP 447
S M+ L PQ P
Sbjct: 425 SMSPMRNLATPAGTPPPQQVRP 446
Score = 55 (24.4 bits), Expect = 5.8e-62, Sum P(7) = 5.8e-62
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQ 1663
I+T R R + + Y + KE D++ EYSE SD + P+Q
Sbjct: 1605 IDTPRVR-KQTRHYSSMKE--DDLMEYSELESDSEDK-PIQ 1641
Score = 52 (23.4 bits), Expect = 5.8e-62, Sum P(7) = 5.8e-62
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAV--Q 648
+PA + KE + P K +V G Q+ ++ ++ G V ++ D++
Sbjct: 633 QPANCDLQQKESELKPKKKKKKKAKVSEG----QECNNISSEAGGEVTALMNEGDSLITP 688
Query: 649 VKKPAQATTALQPKD 663
V+KPA+ + +PK+
Sbjct: 689 VEKPAEKKSKKKPKE 703
Score = 43 (20.2 bits), Expect = 5.8e-62, Sum P(7) = 5.8e-62
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 110 SQESQNRSQGVEHQL-LNPVHXXXXXXXXXXXXKSASVLQSQQQAKLG 156
SQ+ Q +Q H+ PVH +S S Q QQQ +G
Sbjct: 244 SQQHQQPNQQFLHRPGQGPVHPDSVASHNPQFPQSPSRQQQQQQQVMG 291
Score = 43 (20.2 bits), Expect = 4.8e-61, Sum P(7) = 4.8e-61
Identities = 25/106 (23%), Positives = 37/106 (34%)
Query: 554 QAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSD 613
Q S S P + YA + QG S+ T PG ++Q+ +
Sbjct: 489 QLPSHSTHPHPPTTQMYAALSPNHRATAAQGRSSTTPGGNHTEPPGPQDQRLHAQQAQC- 547
Query: 614 QEVECGLLRTQQQSDFPADRGKSVAP-QVSACDAVQVKKPAQATTA 658
Q+++ L QQQ S+ P Q Q P+Q A
Sbjct: 548 QQLQKPPLPFQQQQLQQVHTPPSIPPSQTHLAAHHQSSPPSQQAWA 593
Score = 43 (20.2 bits), Expect = 2.0e-60, Sum P(7) = 2.0e-60
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 198 QFGRGEKQMEQP--QQQVSDQKGEPKPPSQQ 226
Q G G QP QQ+ P PP+ Q
Sbjct: 473 QRGAGPMNAAQPLPHQQLPSHSTHPHPPTTQ 503
Score = 43 (20.2 bits), Expect = 1.1e-59, Sum P(8) = 1.1e-59
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 1841 QMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIA---NAPKSRAS--L 1895
Q +++ ++ +TD E K GE + Q+E SS++ + + A NA + A+ +
Sbjct: 2938 QAESEENSKPKTDEETK--GEGDEKEEKQAEKSSETVESADATGDAAALNAAAAAAAAGM 2995
Query: 1896 KTGRLNCMP 1904
TG L P
Sbjct: 2996 STGTLAFNP 3004
Score = 43 (20.2 bits), Expect = 3.9e-59, Sum P(6) = 3.9e-59
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1620 SGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
+GE + E +GP+ + PN D E + + SD
Sbjct: 3052 TGE-DKESDKGPRTNQDPNASVADVETADNTLEDSD 3086
Score = 42 (19.8 bits), Expect = 1.0e-59, Sum P(7) = 1.0e-59
Identities = 27/118 (22%), Positives = 41/118 (34%)
Query: 377 FSVHGRDN-QVPSRQPVAIGNGLPPI--H-PPQTSLNMTPGVDQPLPVKNSSGPENSQMQ 432
+++ G + Q P R GLP H + PG+ P P+++ + P Q
Sbjct: 192 YAIQGHNQTQTPPRMN-HFPQGLPQEANHFLGHVGMTQNPGMSGP-PIRHLAQPSQQHQQ 249
Query: 433 YLRQ-LNRSS-----PQSAI---PXXXXXXXXXXXXQGGLATQMPQQRLGFTKHQLHV 481
+Q L+R P S P Q + P Q +GF H V
Sbjct: 250 PNQQFLHRPGQGPVHPDSVASHNPQFPQSPSRQQQQQQQVMGGRPHQNMGFNMHNQQV 307
Score = 39 (18.8 bits), Expect = 1.1e-59, Sum P(8) = 1.1e-59
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 1787 THDRDEGEDEQVLQPKIKRKR 1807
TH R++ E + +P +R+R
Sbjct: 1971 THKREQLRQEAMAKPDRRRRR 1991
Score = 38 (18.4 bits), Expect = 5.8e-62, Sum P(7) = 5.8e-62
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 832 RDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREML 880
++A+ R V E+ + + +DDD ++ + + +RY E L
Sbjct: 763 KEAKRKREPSVTSDVEKTPPQSPEEEDDDGVQKRRSSRQVKRKRYTEDL 811
Score = 37 (18.1 bits), Expect = 2.4e-61, Sum P(7) = 2.4e-61
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 205 QMEQPQQQVSDQKG 218
Q EQP+ DQ+G
Sbjct: 77 QYEQPKMHPMDQQG 90
Score = 37 (18.1 bits), Expect = 2.4e-61, Sum P(7) = 2.4e-61
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 198 QFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANII 238
QF + + +Q QQQV G P + Q + +N +
Sbjct: 274 QFPQSPSRQQQQQQQVMG--GRPHQNMGFNMHNQQVPSNTV 312
Score = 37 (18.1 bits), Expect = 7.7e-61, Sum P(4) = 7.7e-61
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 149 SQQQAKLGMLGPASGKDQDMRMGNLKM 175
S+QQ GP K MRMG ++
Sbjct: 833 SEQQELPDAEGPVVEKIMGMRMGKKEL 859
Score = 37 (18.1 bits), Expect = 2.7e-58, Sum P(7) = 2.7e-58
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1658
+ K P G K K +DE + E E++
Sbjct: 2343 DEKELPTGNKLSTEKASEDEEEKMDEDDKSEKS 2375
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 442 (160.7 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 102/292 (34%), Positives = 156/292 (53%)
Query: 982 AHAVN---ERVMRQP---SMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
AH V ER P +L+ G TL DYQ++G++W++ +YN LN IL DEMGLGKT+
Sbjct: 368 AHTVTKDFERCTEGPLQLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTI 427
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q++A ++YL + G GPHLI+VP++ + NW E HKW PS+ + Y G++D+R L
Sbjct: 428 QIVAFLSYLKQI-GKTGPHLIVVPSSTIENWIGEFHKWCPSIQLLTYYGSQDERKHL-RH 485
Query: 1095 EVAALK--FNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR 1149
V K +V++TTY + D+ Y+I DE +K+ +S R L + +
Sbjct: 486 RVKKQKDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVK 545
Query: 1150 CQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209
++++LLTGTPLQN+ +VF+ Q F++ GP + + L
Sbjct: 546 GKKKILLTGTPLQNNLIELISLMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKNKALY 605
Query: 1210 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
+ + I IL+P++LRR V GSLP K ++ M Q +YD
Sbjct: 606 QQDR---IEEAKAILQPYILRRLKNQVLGSLPSKSEQIIEVEMKKPQKQLYD 654
Score = 285 (105.4 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 63/132 (47%), Positives = 88/132 (66%)
Query: 1318 LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377
L++ +KS GK LD +L ++Q+ G +VL+FS T +LDILE YL R Y+R+DG
Sbjct: 744 LNEQLALKS-GKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQ 802
Query: 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 1437
T + DR+ I +FN D F+FLLS RA G G+NL SA+ +II+D D NP N++QA R
Sbjct: 803 TPVLDRQEMINEFNL-SKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDR 861
Query: 1438 AHRIGQKREVKV 1449
HR+GQ++ V V
Sbjct: 862 CHRMGQEKPVHV 873
Score = 58 (25.5 bits), Expect = 7.7e-21, Sum P(3) = 7.7e-21
Identities = 21/97 (21%), Positives = 44/97 (45%)
Query: 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKN---PIYQA 1288
R+E+ + L P +LR + + ++ K+ + V+ + ++++ N + Q+
Sbjct: 609 RIEEAKAILQP---YILRRLKNQVLGSLPS--KSEQIIEVEMKKPQKQLYDNIVEALQQS 663
Query: 1289 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVK 1325
+ M LR+ NHPLL ++D D + K
Sbjct: 664 EESGDSYGSLMRLRQAANHPLLRRSEYTDQKLDKIAK 700
Score = 52 (23.4 bits), Expect = 3.2e-20, Sum P(3) = 3.2e-20
Identities = 24/95 (25%), Positives = 47/95 (49%)
Query: 1196 KEGPTHNADD--DWLETEKKVIIIH--RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCR 1251
K G T N + ++ KK ++ R++ + F+L R ++ G++ K+ V R
Sbjct: 282 KRGETKNQKECREFFNKAKKEDLLQQARINDKIADFVLANRPFEIYGAMVAKMKGVTR-G 340
Query: 1252 MSAIQSAIYDWIKATGTL-RV--DPEDEKRRVQKN 1283
+AI+ A ++++ G L R+ D +D V K+
Sbjct: 341 TNAIE-AYMEFLEKRGILSRILDDCKDHAHTVTKD 374
Score = 51 (23.0 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQH 246
E +M++PQ+Q+ D E S+++ G +++R QAA H
Sbjct: 642 EVEMKKPQKQLYDNIVEALQQSEESGDSYG---SLMRLRQAANH 682
Score = 49 (22.3 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 24/86 (27%), Positives = 37/86 (43%)
Query: 792 ERQRVELMRQVQTSQ-KAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERIL 850
ER RV Q+S +A + + +SQ L H R RT G+ KY E+
Sbjct: 11 ERVRVAHQGNPQSSSLQADMDAKKALLSQ---NLNNGHLTARPPRTT-GPGI-KYGEKKP 65
Query: 851 REFSKRKDDDRNKRMEALKNNDVERY 876
++ DDD + E + + D E +
Sbjct: 66 KKQKGSDDDDEDYVDETMPSEDEEDF 91
Score = 45 (20.9 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 24/101 (23%), Positives = 44/101 (43%)
Query: 533 RVSGKIAEDQLRHLESNGKD-AQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKE 591
+V K ED + HL + K A+ + N ++L +++ + KA + P + K
Sbjct: 574 KVFNKYCED-ITHLLQHFKQLGPALDTKN-KALYQQDRIE-EAKAILQPY---ILRRLKN 627
Query: 592 PAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPAD 632
+P K EQ V K +++ ++ QQS+ D
Sbjct: 628 QVLGSLPSKSEQIIEVEMKKPQKQLYDNIVEALQQSEESGD 668
Score = 40 (19.1 bits), Expect = 6.5e-20, Sum P(3) = 6.5e-20
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 868 LKNNDVERYREML 880
LKN D ERYR ++
Sbjct: 530 LKNCDSERYRGLM 542
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 696 (250.1 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 189/542 (34%), Positives = 280/542 (51%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q +AL++ + G P +II P +
Sbjct: 847 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEMFS-AGVQSPFMIIAPLS 905
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ I Y G+ R + E+ A KF+ L+TT+E
Sbjct: 906 TITNWEREFSNWT-DMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFE 964
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L ++ W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 965 MILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELF 1024
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1025 SLLHFLEPAQFPSEIEFLREFGD---------------LKTEEQV---QKLQSILKPMML 1066
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ +Q Y R E + +
Sbjct: 1067 RRLKEDVEKNLAPKQETIIEVELTDVQKKYY---------RAILERNFSFLSMGATQNSN 1117
Query: 1290 VYKTLNNRCMELRKTCNHPLLNY-----------PYFSDLSKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L + L+ DF LV+S GKL +LD
Sbjct: 1118 VPNLLNTM-MELRKCCNHPYLITGAEEKIVSELREVYDPLAPDFHLQALVRSAGKLVLLD 1176
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L +L+ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ D
Sbjct: 1177 KLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1236
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT +I+D D NP+N+ QA AR HRIGQ + VKV +
Sbjct: 1237 SDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL-- 1294
Query: 1455 VVDKISSHQKEDELRSGGTVDLEDDLAGKDRYI-GSIEGLIRNNIQQYKIDMADEVINAG 1513
I+ + E E+ ++ L G DR + S+ G ++IQQ+ ++++ G
Sbjct: 1295 ----ITRNSYEREMLDKASLKL-----GLDRAVLQSMSGNKESSIQQFSKKEIEDLLRKG 1345
Query: 1514 RF 1515
+
Sbjct: 1346 AY 1347
Score = 56 (24.8 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 578 VSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGL---LRTQQQSDFPADRG 634
++ V Q S V +P V +P + + Q+P + +++ L+TQ Q+ P
Sbjct: 238 LTSVPQTQSQVQTQPVQVQIPVQTQLQSPSQPQQLQAQIQAQTQVALQTQAQTQTPTSPA 297
Query: 635 KS-VAPQVSACDAV 647
+ + PQ AV
Sbjct: 298 AAGIRPQSVTLSAV 311
Score = 50 (22.7 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 25/110 (22%), Positives = 42/110 (38%)
Query: 560 NVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSS---VKSDQEV 616
N+ SLP++ G + + V P+ PG V+ + + V
Sbjct: 16 NLDSLPEDAFSQGSSDPVEEALKLALGQVDPPTDPIPDPGVPILSDVVTDPALIPTPVSV 75
Query: 617 ECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQ-ATTALQPKDVG 665
L+TQQ S P + + AP +S ++ V + A T L +G
Sbjct: 76 PLQNLQTQQLSQIPHEVSVASAP-ISIQPSLSVASNSSGAATVLLSSSLG 124
Score = 47 (21.6 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 275 LSQ-PANASLIAQLIPIMQSRIVANHKAN------ESNMGAPSSPVPVSKQQ----VTSP 323
LSQ P S+ + I I S VA++ + S++G P S V+ QQ +T+
Sbjct: 85 LSQIPHEVSVASAPISIQPSLSVASNSSGAATVLLSSSLGVPVSGAQVTPQQQTQQITAV 144
Query: 324 T--IAGENSP 331
T AG+++P
Sbjct: 145 TQQAAGQHAP 154
Score = 46 (21.3 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 21/82 (25%), Positives = 33/82 (40%)
Query: 1878 RNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHF--KESWD----GKIA-----NAS 1926
RN R++ + + L L M G+ E + F KE D G A N
Sbjct: 1297 RNSYEREMLDKASLKLGLDRAVLQSMSGNKESSIQQFSKKEIEDLLRKGAYAAIMDENDE 1356
Query: 1927 GSSNFSAKMSDVIQRRVCTVSL 1948
GS + ++QRR T+++
Sbjct: 1357 GSRFCEEDIDQILQRRATTITI 1378
Score = 45 (20.9 bits), Expect = 2.3e-60, Sum P(6) = 2.3e-60
Identities = 27/141 (19%), Positives = 53/141 (37%)
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGS-IEGLIRNNIQQYKIDMADEVIN 1511
E+ + + S + ED LR G + D+ R+ I+ +++ I+ +
Sbjct: 1327 ESSIQQFSKKEIEDLLRKGAYAAIMDENDEGSRFCEEDIDQILQRRATTITIESEGK--- 1383
Query: 1512 AGRFDQRTTHEERRMTLETLLHDEERYQETVH----DVPSLQEVNRMIA---RSEDEVEL 1564
F + + T + L D E +Q+ D+ SL N ++ R +
Sbjct: 1384 GSTFSKASFVASENRT-DIALDDPEFWQKWAKKADIDMDSLNRKNTLVIDTPRVRKQTRQ 1442
Query: 1565 FDQMDEEFGWIEEMTRYDQVP 1585
F + E G + ++ D P
Sbjct: 1443 FSSLRGEGGDLSDLDSDDDYP 1463
Score = 42 (19.8 bits), Expect = 2.2e-61, Sum P(5) = 2.2e-61
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 795 RVELMRQVQTSQKAMREKQLKSISQWRK 822
+VE R++++ Q ++ + S W+K
Sbjct: 807 KVEEFRKIESRQPRLKRTPRPAASAWKK 834
Score = 40 (19.1 bits), Expect = 9.2e-61, Sum P(5) = 9.2e-61
Identities = 22/104 (21%), Positives = 40/104 (38%)
Query: 1849 QLRTDTEMKAHG-ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHT 1907
Q R + ++ G + + L D P SR++ SR+ + S GR +C
Sbjct: 1439 QTRQFSSLRGEGGDLSDLDSDDDYPPHNSRQSRASRR--SDRHSGGGY--GRTDCFRVEK 1494
Query: 1908 EDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTVSLLHY 1951
+ W +++A S + + I R + L+HY
Sbjct: 1495 HLLVYGWGR-WRDILSHARCKRRLSERDVETICRVILVFCLIHY 1537
Score = 37 (18.1 bits), Expect = 2.3e-60, Sum P(6) = 2.3e-60
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1773 SGDSHMDHQQSGSWTHDRDEGEDEQVLQP 1801
SGDS ++ +Q+ D DE L P
Sbjct: 2127 SGDSDVEREQAALKMCDGDEENSILSLTP 2155
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 689 (247.6 bits), Expect = 3.6e-61, Sum P(2) = 3.6e-61
Identities = 179/475 (37%), Positives = 252/475 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q + ++ + G +GP LII P +
Sbjct: 258 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LMGIHGPFLIIAPLS 316
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYE 1109
+ NW+ E W ++ I Y G++ R + E+ KF V++TT+E
Sbjct: 317 TITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQVVITTFE 375
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L K+ W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 376 MILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 435
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P+ F + AF + F L+TE++V +L IL+P ML
Sbjct: 436 SLLNFLEPQQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMML 477
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR +DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 478 RRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS----KGANQHN------ 527
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N D K DF ++++ GKL ++D
Sbjct: 528 -MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLID 586
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F D
Sbjct: 587 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 646
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 647 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 701
Score = 48 (22.0 bits), Expect = 2.8e-59, Sum P(4) = 2.8e-59
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 1657
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 843 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 875
Score = 38 (18.4 bits), Expect = 3.6e-61, Sum P(2) = 3.6e-61
Identities = 26/99 (26%), Positives = 41/99 (41%)
Query: 1452 MEAVVDKISSHQKEDELR-----SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 1506
MEA SH +EDE S D+ + L+G + S + L N ++ + +
Sbjct: 1540 MEAKAGPSQSHSEEDEEEEDDDNSEVAADVTEGLSGP-KATASCDELGDVNSERGSLGLG 1598
Query: 1507 D-----EVINAGRFDQRTTHEERRMTLETLLHDEERYQE 1540
E GR + + HEE TL+ L ++Y E
Sbjct: 1599 TLKAPMEPGPEGR-ENHSLHEEN--TLQHLPDGPDKYLE 1634
Score = 38 (18.4 bits), Expect = 2.8e-59, Sum P(4) = 2.8e-59
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 1742 QKFGSLSALEARPGSLSKRM-PDEL 1765
QK SL A+ P SL K M P+ +
Sbjct: 1197 QKSRSLVAMSPSPSSLPKVMRPNSI 1221
Score = 37 (18.1 bits), Expect = 2.8e-59, Sum P(4) = 2.8e-59
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 1866 RHDQSEPSSKSRRNLPSRKI 1885
+++++EPS + + PSR +
Sbjct: 1459 QNEEAEPSPSTPESDPSRSV 1478
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 411 (149.7 bits), Expect = 3.6e-61, Sum P(3) = 3.6e-61
Identities = 105/298 (35%), Positives = 157/298 (52%)
Query: 990 MRQPSMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
M QP +L + L+ YQ++GL W++ L+ NKL+GILADEMGLGKT+Q ++ +A+L + +G
Sbjct: 417 MTQPEILSSTFQLKPYQLIGLNWLVLLHQNKLSGILADEMGLGKTIQAISFLAHLYQ-EG 475
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA--ALKFNVLVT 1106
N+GPHLI VP + L NW EL+ W PS + Y G+ D R + E+ +++N++V+
Sbjct: 476 NHGPHLITVPASTLDNWVRELNLWCPSFKVLVYYGSADDR-KYMRYEILNQIVEYNIIVS 534
Query: 1107 TYEFIM---YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
TY + DRS K+ +Y + DE +K+ S+ R L + RLLLTGTPLQN
Sbjct: 535 TYNLAIGNSSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQN 594
Query: 1164 DXXXXXXXXXXXXPEVFDNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
+ P +F + + FS +E + D T K+I
Sbjct: 595 NLLELMSLLNFIMPNMFSSSTSQIAKMFSMKSSEEQSSFERDRI---THAKLI------- 644
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV 1280
++PF+LRR +V LP K V C MS Q +Y + L+ EKR +
Sbjct: 645 -MKPFILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSAL--LHKLKHSSNGEKREL 699
Score = 316 (116.3 bits), Expect = 3.6e-61, Sum P(3) = 3.6e-61
Identities = 78/191 (40%), Positives = 112/191 (58%)
Query: 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 1359
EL + C + Y L+ D L+ S GKL +L ++L L+ G RV+LFS T +LDI
Sbjct: 757 ELHRLCQQYSALHEY--QLNTDVLLDS-GKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDI 813
Query: 1360 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419
LE +L+ + Y R+DG+T + DR I FN+ D D F+FLLS RA G G+NL SA+ V
Sbjct: 814 LEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNT-DQDIFVFLLSTRAGGLGINLTSANVV 872
Query: 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVD---KISSHQKEDELRSGGT 1473
I++D D NP N++QA R HR+GQ + VKVI + +++ D +I + + E T
Sbjct: 873 ILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLISKDSIEDTMLRIGERKLKLEQEMTAT 932
Query: 1474 VDLEDDLAGKD 1484
D E+D D
Sbjct: 933 QDGEEDTLPDD 943
Score = 89 (36.4 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 31/94 (32%), Positives = 43/94 (45%)
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
I++PF+LRR +V LP K V C MS Q +Y + L+ EKR
Sbjct: 644 IMKPFILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSAL--LHKLKHSSNGEKRE--- 698
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
L N M+LRK NHPLL+ +++
Sbjct: 699 -----------LTNVMMQLRKMSNHPLLHRQFYT 721
Score = 46 (21.3 bits), Expect = 3.6e-61, Sum P(3) = 3.6e-61
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 208 QPQQQVSDQKGEPKPPSQQTLGGQGMAANIIR-PMQA 243
+PQ QV+ PKP + L G + I + P+ A
Sbjct: 245 RPQAQVTKLSSPPKPKPSRPLDGTRTSQRIAKQPILA 281
Score = 46 (21.3 bits), Expect = 3.6e-61, Sum P(3) = 3.6e-61
Identities = 40/197 (20%), Positives = 78/197 (39%)
Query: 727 KISGILAVNLERKRIRPDLVLRLQIEXXXXXXXXXXXXXXXEVDQQQQEIMAMPDRQYRK 786
K SG+ A + ++R R + Q E Q+ ++ M + RK
Sbjct: 128 KTSGMAAADSVQQRRRQQMCGSSQESDSRKGGRVSAADDSEEEGQRSKDQERMLRKLQRK 187
Query: 787 FVRLCERQRVELMRQ----VQTSQKAMR---EKQLKSISQWRKKLLEAHWAIRDARTARN 839
F L + + +++++ + + + +R + ++S + A R A T
Sbjct: 188 FPHLNKNELRDVLQEHDWLIDDALETLRMFSDLVVESEDDSSQTSTPAKHTRRVAETRPQ 247
Query: 840 RGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLS 899
V K + S+ D R + A K + +Y + E++ S +A+ +L
Sbjct: 248 AQVTKLSSPPKPKPSRPLDGTRTSQRIA-KQPILAKYTYVSSEEECS-DSEASVVNGLLD 305
Query: 900 SFLTQTEEYLYKLGSKI 916
S Q+EE L KL ++I
Sbjct: 306 SDSDQSEETLSKLKTEI 322
Score = 46 (21.3 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 36/185 (19%), Positives = 69/185 (37%)
Query: 1146 DRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADD 1205
D + +RR + G+ ++D E R + + Q++ P N ++
Sbjct: 136 DSVQQRRRQQMCGSSQESDSRKGGRVSAADDSEEEGQRSKDQERMLRKLQRKFPHLNKNE 195
Query: 1206 --DWLETEKKVIIIHRLH--QILEPFMLRRRVEDVEGSLPPK-VSIVLRCRMSAIQSAIY 1260
D L+ E +I L ++ ++ + + S P K V R A + +
Sbjct: 196 LRDVLQ-EHDWLIDDALETLRMFSDLVVESEDDSSQTSTPAKHTRRVAETRPQAQVTKLS 254
Query: 1261 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK 1320
K + +D +R+ K PI Y + C + + + LL+ SD S+
Sbjct: 255 SPPKPKPSRPLDGTRTSQRIAKQPILAKYTYVSSEEECSDSEASVVNGLLDSD--SDQSE 312
Query: 1321 DFLVK 1325
+ L K
Sbjct: 313 ETLSK 317
Score = 41 (19.5 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 1129 DEAQRMKDRESVLARDLDR 1147
+E QR KD+E +L R L R
Sbjct: 169 EEGQRSKDQERML-RKLQR 186
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 430 (156.4 bits), Expect = 4.4e-61, Sum P(3) = 4.4e-61
Identities = 112/328 (34%), Positives = 164/328 (50%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS+LR GTLR YQ GL W+ SLYNN NGILADEMGLGKT+Q ++L+AYL +GP
Sbjct: 816 PSLLR-GTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGP 874
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ E K+ P + Y G+ QR++ F+V +T+Y+ ++
Sbjct: 875 HLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQLVV 934
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX---- 1168
D+ + W Y+I+DEA +K+ S R L + + RLLLTGTPLQN+
Sbjct: 935 QDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLL 994
Query: 1169 -----XXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
PE F N F WF +P + +A + L E + R Q
Sbjct: 995 YFLMPSSKVNQAMPEGFANLDDFQQWFGKPVNRILEQTSAGNSDLIDENE-----RTTQK 1049
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI---KATGTLRVDPEDEKRRV 1280
++ R V + L P + L+ + Y+ I + + R +D R
Sbjct: 1050 MDE-ETRNTVARLHQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRA 1108
Query: 1281 QKNPIYQAKVYKTLNNRCMELRKTCNHP 1308
+ + + ++ N M+LRK CNHP
Sbjct: 1109 KTKETLASGNFLSIINCLMQLRKVCNHP 1136
Score = 299 (110.3 bits), Expect = 4.4e-61, Sum P(3) = 4.4e-61
Identities = 92/280 (32%), Positives = 136/280 (48%)
Query: 1320 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379
K L CGKL L +L +L GHR L+F+ MTK+LDILE++L Y R+DG T
Sbjct: 1358 KTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATK 1417
Query: 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1439
+EDR+ FN D +F+LS R+ G G+NL ADTVI YD D NP ++Q R H
Sbjct: 1418 IEDRQLLTEKFN-RDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCH 1476
Query: 1440 RIGQKREVKVIYMEAVVDKISSH--QKEDELRSGGTVDLEDDLAGKDRYIG--SIEGLIR 1495
RIGQ R+V IY I S+ +K ++ R V +++ D Y G S+ L+
Sbjct: 1477 RIGQVRDVH-IYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTD-YFGKFSVRDLVS 1534
Query: 1496 NN-----IQQYKIDMADEVINAGRFDQRTTHEER---RMTLETLLHDEERYQE-----TV 1542
++ I ID + + Q E+R L+ + D++ ++E T
Sbjct: 1535 DSNIGKEITDRTIDFSGDAKMGNVLAQAEDEEDRVAAGAALKEVAIDDDDFKEETRSATT 1594
Query: 1543 HDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEE-MTRY 1581
P+ E N + D + ++ G I+E M R+
Sbjct: 1595 GATPAPTETNALSTTDGDAAFIDVDYEDGIGHIDEYMLRF 1634
Score = 55 (24.4 bits), Expect = 4.4e-61, Sum P(3) = 4.4e-61
Identities = 29/113 (25%), Positives = 53/113 (46%)
Query: 632 DRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKY-HGP--LFDFPFFTRKHDSVG 688
+R K + PQ + +++ P + T +++PK GAA H L F++ H +
Sbjct: 392 ERRKVILPQSN----IKLTDPFRNTFSVKPKLHGAANNATHQDYLLAQGMAFSKVHQQMR 447
Query: 689 STAMVNSSNNLTLAYDVKDLLSEEG-LEVLQKKRSENLKKISGILAVNLERKR 740
+ + + D + ++G E L K+R +NLKK+S L + +KR
Sbjct: 448 KQHHLRT-RKIAAMID-QHFKKKKGEKERLAKEREQNLKKMSR-LTMQAVKKR 497
Score = 44 (20.5 bits), Expect = 6.2e-60, Sum P(3) = 6.2e-60
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 715 EVLQKKRSENLKKISG 730
+++Q ++ E LKKI G
Sbjct: 506 QIIQNEKEEELKKIKG 521
Score = 41 (19.5 bits), Expect = 1.3e-59, Sum P(3) = 1.3e-59
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 528 VNNQDR---VSGKIAEDQLRHLESNGKDAQAVSSSNVQSLP 565
+N+ DR V+G D++ + + + + V+ S V+ +P
Sbjct: 774 MNSSDRELEVNGNGKIDKIASTDEDDSNVEIVNGSKVKDVP 814
Score = 37 (18.1 bits), Expect = 7.6e-20, Sum P(3) = 7.6e-20
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 802 VQTSQKAMREKQLKSISQWRKKLL-EAHWAIRDARTARNRGVAKYH 846
+ + Q ++++Q +W +L EAH I++ R+ R R + ++
Sbjct: 927 ITSYQLVVQDQQSFKRRRWTYMILDEAH-NIKNFRSTRWRALLNFN 971
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 689 (247.6 bits), Expect = 4.5e-61, Sum P(2) = 4.5e-61
Identities = 179/475 (37%), Positives = 252/475 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q + ++ + G +GP LII P +
Sbjct: 258 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LMGIHGPFLIIAPLS 316
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYE 1109
+ NW+ E W ++ I Y G++ R + E+ KF V++TT+E
Sbjct: 317 TITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQVVITTFE 375
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L K+ W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 376 MILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 435
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P+ F + AF + F L+TE++V +L IL+P ML
Sbjct: 436 SLLNFLEPQQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMML 477
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR +DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 478 RRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS----KGANQHN------ 527
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N D K DF ++++ GKL ++D
Sbjct: 528 -MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLID 586
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F D
Sbjct: 587 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 646
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 647 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 701
Score = 48 (22.0 bits), Expect = 2.9e-59, Sum P(4) = 2.9e-59
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 1657
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 843 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 875
Score = 38 (18.4 bits), Expect = 2.9e-59, Sum P(4) = 2.9e-59
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 1742 QKFGSLSALEARPGSLSKRM-PDEL 1765
QK SL A+ P SL K M P+ +
Sbjct: 1197 QKSRSLVAMSPSPSSLPKVMRPNSI 1221
Score = 37 (18.1 bits), Expect = 4.5e-61, Sum P(2) = 4.5e-61
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 1452 MEAVVDKISSHQKEDE 1467
MEA SH +EDE
Sbjct: 1540 MEAKAGPSQSHSEEDE 1555
Score = 37 (18.1 bits), Expect = 2.9e-59, Sum P(4) = 2.9e-59
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 1866 RHDQSEPSSKSRRNLPSRKI 1885
+++++EPS + + PSR +
Sbjct: 1459 QNEEAEPSPSTPESDPSRSV 1478
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 447 (162.4 bits), Expect = 5.2e-61, Sum P(3) = 5.2e-61
Identities = 109/296 (36%), Positives = 165/296 (55%)
Query: 990 MRQPSMLRAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
++QP +L + L+ YQ++GL+W++ L+ +KL+GILADEMGLGKT+Q +A +A+L E KG
Sbjct: 436 IKQPKVLNSNLKLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHLYE-KG 494
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL-KFNVLVTT 1107
GPHLI VP++ L NW EL W PS+ + Y G+ + R L + L FN++V+T
Sbjct: 495 IKGPHLITVPSSTLDNWVRELGLWCPSLKVLIYYGSVEDRKYLRQDILTGLIDFNIIVST 554
Query: 1108 YEFIM---YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164
Y + +DRS K+ KY + DE +K+ S+ R L + RLLLTGTPLQN+
Sbjct: 555 YNLTIGNDHDRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMTINAEHRLLLTGTPLQNN 614
Query: 1165 XXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P +F + + S+ F T +++++ K I RL I+
Sbjct: 615 LLELMSLLNFIMPSMFSSSTS---QISKMFS----TRSSEEE-SSFHKDRIAQARL--IM 664
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV 1280
+PF+LRR +V LPPK+ + C MS Q +YD + L+ P +KR +
Sbjct: 665 KPFILRRVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFKR--LKKTPNGDKREL 718
Score = 277 (102.6 bits), Expect = 5.2e-61, Sum P(3) = 5.2e-61
Identities = 71/170 (41%), Positives = 102/170 (60%)
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L+ GK +L + L KL+ G RV+LFS T +LDI+E L+ Y R+DG+T + +
Sbjct: 796 LILDSGKFALLTKTLAKLKEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAE 855
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R I +N++ + F+FLLS RA G+G+NL SA+TVI++D D NP N++QA R HR+G
Sbjct: 856 RIGLIDKYNTNP-EIFVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHRMG 914
Query: 1443 QKREVKVIYMEAVVDKISSHQKED-ELRSGGT-VDLEDDLAGKDRYIGSI 1490
Q R V+VI + IS ED LR G + LE D+ + G+I
Sbjct: 915 QTRTVQVIKL------ISKDSIEDCMLRVGQEKLKLEQDMTTDEGEDGAI 958
Score = 112 (44.5 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
Identities = 33/94 (35%), Positives = 47/94 (50%)
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
I++PF+LRR +V LPPK+ + C MS Q +YD + L+ P +KR
Sbjct: 663 IMKPFILRRVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFKR--LKKTPNGDKRE--- 717
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
L N M+LRK NHPLL+ Y++
Sbjct: 718 -----------LCNVMMQLRKMANHPLLHRQYYT 740
Score = 51 (23.0 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 673 PLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENL-KKISGI 731
PL ++T + S AM+ + YD L +E +EV+ NL ++ S I
Sbjct: 732 PLLHRQYYTSDKLAAMSKAMLKEPTH----YDADPALIQEDMEVMSDFELHNLCREYSSI 787
Query: 732 LAVNLERKRI 741
LE+ I
Sbjct: 788 SGFQLEKALI 797
Score = 46 (21.3 bits), Expect = 5.2e-61, Sum P(3) = 5.2e-61
Identities = 22/96 (22%), Positives = 40/96 (41%)
Query: 636 SVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNS 695
S P+VS+ A++ +K A + + + R PL D + D + S S
Sbjct: 264 SHVPEVSSMSALKTQKSALSKSTSKNSSFKRKRGDEMPLNDVSA-SEDEDEIDSDVDSMS 322
Query: 696 SNNLTLAYD-VKDLLSEEGLEVLQKKRSENLKKISG 730
+ + D + L ++ ++ LQ + L ISG
Sbjct: 323 DDQDSEDEDSISGTLQDKIIQFLQDASLDELALISG 358
Score = 39 (18.8 bits), Expect = 9.2e-18, Sum P(3) = 9.2e-18
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1191 SQPFQKEGPTH-NADDDWLETEKKVIIIHRLHQILEPF 1227
S+ KE PTH +AD ++ + +V+ LH + +
Sbjct: 748 SKAMLKE-PTHYDADPALIQEDMEVMSDFELHNLCREY 784
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 465 (168.7 bits), Expect = 7.8e-61, Sum P(3) = 7.8e-61
Identities = 100/299 (33%), Positives = 166/299 (55%)
Query: 967 NAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILAD 1026
N ++ S N + + + + P +++A TLRDYQ GL W+L LY N +NGILAD
Sbjct: 629 NEHKNDSDDNDDILTCNMDEKHLTKIPPIIKA-TLRDYQHAGLHWLLYLYKNNINGILAD 687
Query: 1027 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKD 1086
EMGLGKT+Q ++L++YL + +GPHL+IVP ++L+NW+ EL ++ P + Y G ++
Sbjct: 688 EMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQN 747
Query: 1087 QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLA 1142
+R + F++ +++Y ++ D + WKYII+DEA +K+ R +++
Sbjct: 748 ERYKKRVGWFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIIL 807
Query: 1143 RDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHN 1202
L R C LL+TGTPLQN P +F + F +WFS P
Sbjct: 808 -SLKRDNC---LLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLA----- 858
Query: 1203 ADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
+ + K+ +I RLH ++ P++LRR ++VE +P K +++C+++ Q +YD
Sbjct: 859 IEKSKIHHSKE--LIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYD 915
Score = 268 (99.4 bits), Expect = 7.8e-61, Sum P(3) = 7.8e-61
Identities = 57/132 (43%), Positives = 85/132 (64%)
Query: 1318 LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377
L+KD + S GKL L+++L K +R G++ LLF+ K+LDILE +L + R+DG+
Sbjct: 1759 LNKDISLGS-GKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGS 1817
Query: 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 1437
T +E R+ + FN+ D FIF+ S R+ G+NL +A+ VI YD D NP ++QA+ R
Sbjct: 1818 TKVEQRQKIVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDR 1876
Query: 1438 AHRIGQKREVKV 1449
HRIGQ ++V V
Sbjct: 1877 CHRIGQTKDVHV 1888
Score = 109 (43.4 bits), Expect = 8.2e-23, Sum P(4) = 8.2e-23
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
+I RLH ++ P++LRR ++VE +P K +++C+++ Q +YD
Sbjct: 870 LIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFI----------- 918
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH------PLLNYPYFSDLSKDFLV 1324
+ VQ N + Y L N ++LRK CNH + PY+ LS + V
Sbjct: 919 NNKNVQ-NTLNTGN-YIGLMNILIQLRKVCNHCDLFTNKYIQTPYYYMLSIRYFV 971
Score = 52 (23.4 bits), Expect = 7.8e-61, Sum P(3) = 7.8e-61
Identities = 26/121 (21%), Positives = 59/121 (48%)
Query: 1491 EGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 1550
E + + +Q+ K+D + IN G F+ TH + T T H+++ + +V +++E
Sbjct: 1899 ENIWKKQLQKRKLD--NICINMGNFNNSNTHSKITDTDPT--HNKDWFT----NVDTIKE 1950
Query: 1551 VNRMIARSEDEVELF-DQMDEEFGWIEEMTRYD-QVPKWLRASTKEVNATIANLSKKPSK 1608
V ++D+ +++ D++ E +E + + + K L + + N +KK ++
Sbjct: 1951 VFINKKNNDDDDDMYKDRLLHE--QVENKDKMNVRFEKTLEHVEDKDDIRALNETKKETQ 2008
Query: 1609 N 1609
N
Sbjct: 2009 N 2009
Score = 46 (21.3 bits), Expect = 8.2e-23, Sum P(4) = 8.2e-23
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV-LARDLDRYRCQRR 1153
YE YD+ K++K ++ ++ + D S + RD R CQ++
Sbjct: 506 YESDNYDKEKINKKKELILLKNDIENDSDETSEHIKRD-SRSSCQKQ 551
Score = 44 (20.5 bits), Expect = 5.3e-60, Sum P(3) = 5.3e-60
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 1789 DRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEER 1823
D D+ +++L +++ K + VR T+E E++
Sbjct: 1960 DDDDMYKDRLLHEQVENKDKMNVRFEKTLEHVEDK 1994
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 465 (168.7 bits), Expect = 7.8e-61, Sum P(3) = 7.8e-61
Identities = 100/299 (33%), Positives = 166/299 (55%)
Query: 967 NAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILAD 1026
N ++ S N + + + + P +++A TLRDYQ GL W+L LY N +NGILAD
Sbjct: 629 NEHKNDSDDNDDILTCNMDEKHLTKIPPIIKA-TLRDYQHAGLHWLLYLYKNNINGILAD 687
Query: 1027 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKD 1086
EMGLGKT+Q ++L++YL + +GPHL+IVP ++L+NW+ EL ++ P + Y G ++
Sbjct: 688 EMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQN 747
Query: 1087 QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLA 1142
+R + F++ +++Y ++ D + WKYII+DEA +K+ R +++
Sbjct: 748 ERYKKRVGWFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIIL 807
Query: 1143 RDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHN 1202
L R C LL+TGTPLQN P +F + F +WFS P
Sbjct: 808 -SLKRDNC---LLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLA----- 858
Query: 1203 ADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
+ + K+ +I RLH ++ P++LRR ++VE +P K +++C+++ Q +YD
Sbjct: 859 IEKSKIHHSKE--LIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYD 915
Score = 268 (99.4 bits), Expect = 7.8e-61, Sum P(3) = 7.8e-61
Identities = 57/132 (43%), Positives = 85/132 (64%)
Query: 1318 LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377
L+KD + S GKL L+++L K +R G++ LLF+ K+LDILE +L + R+DG+
Sbjct: 1759 LNKDISLGS-GKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGS 1817
Query: 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 1437
T +E R+ + FN+ D FIF+ S R+ G+NL +A+ VI YD D NP ++QA+ R
Sbjct: 1818 TKVEQRQKIVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDR 1876
Query: 1438 AHRIGQKREVKV 1449
HRIGQ ++V V
Sbjct: 1877 CHRIGQTKDVHV 1888
Score = 109 (43.4 bits), Expect = 8.2e-23, Sum P(4) = 8.2e-23
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
+I RLH ++ P++LRR ++VE +P K +++C+++ Q +YD
Sbjct: 870 LIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFI----------- 918
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH------PLLNYPYFSDLSKDFLV 1324
+ VQ N + Y L N ++LRK CNH + PY+ LS + V
Sbjct: 919 NNKNVQ-NTLNTGN-YIGLMNILIQLRKVCNHCDLFTNKYIQTPYYYMLSIRYFV 971
Score = 52 (23.4 bits), Expect = 7.8e-61, Sum P(3) = 7.8e-61
Identities = 26/121 (21%), Positives = 59/121 (48%)
Query: 1491 EGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 1550
E + + +Q+ K+D + IN G F+ TH + T T H+++ + +V +++E
Sbjct: 1899 ENIWKKQLQKRKLD--NICINMGNFNNSNTHSKITDTDPT--HNKDWFT----NVDTIKE 1950
Query: 1551 VNRMIARSEDEVELF-DQMDEEFGWIEEMTRYD-QVPKWLRASTKEVNATIANLSKKPSK 1608
V ++D+ +++ D++ E +E + + + K L + + N +KK ++
Sbjct: 1951 VFINKKNNDDDDDMYKDRLLHE--QVENKDKMNVRFEKTLEHVEDKDDIRALNETKKETQ 2008
Query: 1609 N 1609
N
Sbjct: 2009 N 2009
Score = 46 (21.3 bits), Expect = 8.2e-23, Sum P(4) = 8.2e-23
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV-LARDLDRYRCQRR 1153
YE YD+ K++K ++ ++ + D S + RD R CQ++
Sbjct: 506 YESDNYDKEKINKKKELILLKNDIENDSDETSEHIKRD-SRSSCQKQ 551
Score = 44 (20.5 bits), Expect = 5.3e-60, Sum P(3) = 5.3e-60
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 1789 DRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEER 1823
D D+ +++L +++ K + VR T+E E++
Sbjct: 1960 DDDDMYKDRLLHEQVENKDKMNVRFEKTLEHVEDK 1994
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 661 (237.7 bits), Expect = 9.2e-61, P = 9.2e-61
Identities = 181/536 (33%), Positives = 292/536 (54%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
QP ++ G + DYQ GL W+ + + N ILADEMGLGKT+QV+ L+A L++ +
Sbjct: 597 QPRIMTGGEIMDYQRDGLNWLYFKWFKQQNAILADEMGLGKTIQVIGLLATLVQDHKCW- 655
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAK-----DQRSRLFSQEVAALKFNVLVT 1106
P LI+VPN+ NW+ EL W+PS+ + Y G+ Q +F + L+ +V++T
Sbjct: 656 PFLIVVPNSTCPNWRKELKTWVPSLRAVTYYGSSLARKMAQEHEMFIRGDPDLRCHVVIT 715
Query: 1107 TYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164
+YE ++ D R LS++ W +I+DE QR+K +S + L + + ++L+TGTPLQN+
Sbjct: 716 SYETMVDDSCRKVLSRIPWAGLIVDEGQRLKSDKSQIYEGLSKMKFPFKVLMTGTPLQNN 775
Query: 1165 XXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
E+F N F D Q + ++ + K+ I LH+++
Sbjct: 776 TK-----------ELF-NLLQFCD------QSKN-AEELEEKYGTLSKENI--PELHELI 814
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
PF LRR V LPP V I++ MS +Q +Y I A T + + R + P
Sbjct: 815 RPFFLRRTKAQVLTFLPPVVQIIVPVTMSVLQKKLYKSILAKNTQLIKAIFQ-RNEEDQP 873
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS-----DLSKDFLVKSCGKLWILDRILIK 1339
+ Q + + N + C+ + + +++ LV + GKL +L+ +L K
Sbjct: 874 LKQTERHNLNNILMQLRKCLCHPFIFSKAIEERTDDPEVAHRNLVDAAGKLQLLELMLPK 933
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVDFNSHDSDCF 1398
LQ GHRVL+FS + LD++E++L L +RR+DG TSLE ++ I D+N+ +S F
Sbjct: 934 LQARGHRVLVFSQFLENLDVMEDFLDGLGLPHRRLDGRMTSLE-KQRMIDDYNAENSPYF 992
Query: 1399 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 1458
FLLS R+ G G+NL +ADTVII DPD NP + QA++RAHRIGQK KV+ + ++ +
Sbjct: 993 AFLLSTRSGGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIGQKN--KVLVFQLMI-R 1049
Query: 1459 ISSHQKEDEL-RSGGTVD--LEDDLAGKDRYIGSIEGLIRNNIQQ-YKIDMADEVI 1510
S+ +K ++ R +D L D +A +D +E ++R+ + + D + ++I
Sbjct: 1050 GSAEEKIMQIGRKKMVLDHVLIDRMAAEDDDGEDLESILRHGAKALFDDDNSGDII 1105
Score = 426 (155.0 bits), Expect = 5.6e-35, Sum P(2) = 5.6e-35
Identities = 147/455 (32%), Positives = 230/455 (50%)
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I LH+++ PF LRR V LPP V I++ MS +Q +Y I A T + +
Sbjct: 807 IPELHELIRPFFLRRTKAQVLTFLPPVVQIIVPVTMSVLQKKLYKSILAKNTQLIKAIFQ 866
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKL 1330
R + P+ Q + + LNN M+LRK HP + + + D LV + GKL
Sbjct: 867 -RNEEDQPLKQTERHN-LNNILMQLRKCLCHPFIFSKAIEERTDDPEVAHRNLVDAAGKL 924
Query: 1331 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVD 1389
+L+ +L KLQ GHRVL+FS + LD++E++L L +RR+DG TSLE ++ I D
Sbjct: 925 QLLELMLPKLQARGHRVLVFSQFLENLDVMEDFLDGLGLPHRRLDGRMTSLE-KQRMIDD 983
Query: 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
+N+ +S F FLLS R+ G G+NL +ADTVII DPD NP + QA++RAHRIGQK KV
Sbjct: 984 YNAENSPYFAFLLSTRSGGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIGQKN--KV 1041
Query: 1450 IYMEAVVDKISSHQKEDEL-RSGGTVD--LEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 1506
+ + ++ + S+ +K ++ R +D L D +A +D +E ++R+ + D
Sbjct: 1042 LVFQLMI-RGSAEEKIMQIGRKKMVLDHVLIDRMAAEDDDGEDLESILRHGAKAL-FD-- 1097
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP-SLQEVNRMIARSEDEVELF 1565
D+ N+G D T E +++ LL + Q T D S E + + D L
Sbjct: 1098 DD--NSG--DIIYTSE----SVDRLLDRSQAEQATNPDTNVSASEFSFAQVWAADSQGLE 1149
Query: 1566 DQMD--EEFGWIEEMTRYDQVPKWLRASTKEVN--ATIANLSKKPSKNILFGSNIGVDSG 1621
DQ++ EE I T + + RA+ +E A I K+ + + + VD+
Sbjct: 1150 DQLNVAEEDPTISNQTWEKILQERERAAAEEARKKAEILGRGKRKRATVDYSA---VDAD 1206
Query: 1622 EIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
+ + ++E DE G S+ S ++
Sbjct: 1207 PAPARALASRETESDAEFRE--DEAGVASDYSMED 1239
Score = 53 (23.7 bits), Expect = 5.6e-35, Sum P(2) = 5.6e-35
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEF 1110
GP + V VL N + ++WLP S + Y+ + S++ + V + ++E
Sbjct: 17 GPQMTAVEVPVLSNLRE--YEWLPGHSTVRYI-----IHEVLSEDSYEPSYLVKLESHEL 69
Query: 1111 IMYDRSKLSKVD 1122
+ S+L K++
Sbjct: 70 EVISSSRLQKLE 81
Score = 49 (22.3 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 37/166 (22%), Positives = 66/166 (39%)
Query: 1035 QVMALIAYL-MEFKGNYGPHLIIVPNAVLVNWK--SELH-KWLPSVSCIY-YVGAKDQRS 1089
+V A++A+ + P + + L+ WK S H W+P S ++ Y+ +R+
Sbjct: 413 EVNAMVAWRPLSTASKKSPKISELDKEYLIKWKEKSYAHCTWMPG-SWVWGYINPVMRRA 471
Query: 1090 RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQRMKDRESVLARDLDRY 1148
L S + + +TT E I D + + D K+ D +D + L R +D
Sbjct: 472 FLRSDKSHLPR----MTTDEAIPNDYLRFDIIFDVKFADNDLHMYGEDYDEDLER-IDNV 526
Query: 1149 RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPF 1194
+ + G P + D D + A+ DW +PF
Sbjct: 527 S-KAYVKFKGLPYE-DAVWEVPPDRSNTEAWNDFKAAYADWAKKPF 570
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 689 (247.6 bits), Expect = 1.4e-60, Sum P(4) = 1.4e-60
Identities = 180/475 (37%), Positives = 252/475 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q + ++ + +G +GP LII P +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPLS 519
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYE 1109
+ NW+ E W ++ I Y G++ R + E+ KF+V++TT+E
Sbjct: 520 TITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFE 578
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L K+ W +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 579 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 638
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + AF + F L+TE++V +L IL+P ML
Sbjct: 639 SLLNFLEPSQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMML 680
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR +DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 681 RRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT----KGANQHN------ 730
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N D K DF ++++ GKL ++D
Sbjct: 731 -MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F D
Sbjct: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 904
Score = 54 (24.1 bits), Expect = 1.4e-60, Sum P(4) = 1.4e-60
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 567 EEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQ 626
+E +G D AA + + P GK + + V S++ DQ + LR+ ++
Sbjct: 167 KEKRSGADTAARTKSKKASKEQGPTPVERKKKGKRKSETTVESLELDQGLPNSSLRSPEE 226
Query: 627 SDFPADRGK 635
S AD K
Sbjct: 227 STESADSQK 235
Score = 48 (22.0 bits), Expect = 1.4e-60, Sum P(4) = 1.4e-60
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 1657
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 1046 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1078
Score = 42 (19.8 bits), Expect = 1.4e-60, Sum P(4) = 1.4e-60
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 1775 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR--HTVE 1818
D ++ + + S TH DE E+E+ + + +R RP H E
Sbjct: 1852 DKSLESKLALSQTHS-DEEEEEENEEENVGVATGLRERPEVLHLAE 1896
Score = 38 (18.4 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE---DELRSGG 1472
D + +NEE+ V A + ++ EV + E D + + +E + GG
Sbjct: 1867 DEEEEEENEEENVGVATGLRERPEVLHL-AEPTADTLREKSRSFHVEEAKRGG 1918
Score = 38 (18.4 bits), Expect = 6.3e-59, Sum P(4) = 6.3e-59
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 648 QVKKPAQATTALQPKDVGAARKYHGP 673
+ K+P +A +PK A+K P
Sbjct: 132 KAKEPKRAKEPKEPKQKDGAKKARKP 157
Score = 37 (18.1 bits), Expect = 8.0e-59, Sum P(4) = 8.0e-59
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 414 VDQPLPVKNSSGPENSQMQYLRQLNRSSPQ 443
+DQ LP + PE S Q RS Q
Sbjct: 212 LDQGLPNSSLRSPEESTESADSQKRRSGRQ 241
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 689 (247.6 bits), Expect = 1.4e-60, Sum P(4) = 1.4e-60
Identities = 180/475 (37%), Positives = 252/475 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q + ++ + +G +GP LII P +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPLS 519
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYE 1109
+ NW+ E W ++ I Y G++ R + E+ KF+V++TT+E
Sbjct: 520 TITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFE 578
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L K+ W +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 579 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 638
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + AF + F L+TE++V +L IL+P ML
Sbjct: 639 SLLNFLEPSQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMML 680
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR +DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 681 RRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT----KGANQHN------ 730
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N D K DF ++++ GKL ++D
Sbjct: 731 -MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F D
Sbjct: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 904
Score = 54 (24.1 bits), Expect = 1.4e-60, Sum P(4) = 1.4e-60
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 567 EEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQ 626
+E +G D AA + + P GK + + V S++ DQ + LR+ ++
Sbjct: 167 KEKRSGADTAARTKSKKASKEQGPTPVERKKKGKRKSETTVESLELDQGLPNSSLRSPEE 226
Query: 627 SDFPADRGK 635
S AD K
Sbjct: 227 STESADSQK 235
Score = 48 (22.0 bits), Expect = 1.4e-60, Sum P(4) = 1.4e-60
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 1657
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 1046 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1078
Score = 42 (19.8 bits), Expect = 1.4e-60, Sum P(4) = 1.4e-60
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 1775 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR--HTVE 1818
D ++ + + S TH DE E+E+ + + +R RP H E
Sbjct: 1852 DKSLESKLALSQTHS-DEEEEEENEEENVGVATGLRERPEVLHLAE 1896
Score = 38 (18.4 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE---DELRSGG 1472
D + +NEE+ V A + ++ EV + E D + + +E + GG
Sbjct: 1867 DEEEEEENEEENVGVATGLRERPEVLHL-AEPTADTLREKSRSFHVEEAKRGG 1918
Score = 38 (18.4 bits), Expect = 6.3e-59, Sum P(4) = 6.3e-59
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 648 QVKKPAQATTALQPKDVGAARKYHGP 673
+ K+P +A +PK A+K P
Sbjct: 132 KAKEPKRAKEPKEPKQKDGAKKARKP 157
Score = 37 (18.1 bits), Expect = 8.0e-59, Sum P(4) = 8.0e-59
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 414 VDQPLPVKNSSGPENSQMQYLRQLNRSSPQ 443
+DQ LP + PE S Q RS Q
Sbjct: 212 LDQGLPNSSLRSPEESTESADSQKRRSGRQ 241
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 427 (155.4 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
Identities = 100/276 (36%), Positives = 156/276 (56%)
Query: 990 MRQPSMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+ QPS+L +L+ YQ VGL W+ ++ + LNGILADEMGLGKT+Q +A +AYL + +G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EG 543
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTT 1107
N GPHLI+VP + + NW E++ W P++ + Y G++++R ++ F+ +NV+VTT
Sbjct: 544 NNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTT 603
Query: 1108 YEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164
Y + DRS ++ Y I DE +K+ S+ + L RLLLTGTP+QN+
Sbjct: 604 YNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663
Query: 1165 XXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P +F + + + F + T +AD+ + +++ I H QI+
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQII 715
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+PF+LRR E+V LPPK + C MS Q +Y
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLY 751
Score = 290 (107.1 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 1312 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 837 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 896
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 897 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1431 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 1479
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1009
Score = 107 (42.7 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 704 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLY-----LGLFN- 756
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 757 -------RLKKS-INNLEKNTEMCNVMMQLRKMANHPLLHRQYYT 793
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 691 (248.3 bits), Expect = 1.5e-60, Sum P(3) = 1.5e-60
Identities = 189/529 (35%), Positives = 281/529 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I P +
Sbjct: 206 LREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 264
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G++ R + E+ + KF+ ++TT+E
Sbjct: 265 TIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFE 323
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 324 MILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELF 383
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 384 SLLHFLEPGRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 425
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K QA
Sbjct: 426 RRLKEDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGG-GQAN 475
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L+N F + S DF ++++ GKL ++D
Sbjct: 476 VPNLLNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 534
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ D
Sbjct: 535 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPD 594
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 595 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR-- 651
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 652 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 699
Score = 44 (20.5 bits), Expect = 1.5e-60, Sum P(3) = 1.5e-60
Identities = 27/126 (21%), Positives = 46/126 (36%)
Query: 1787 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGD--SSLLPFQMDN 1844
T ++ E + E P K K I+ ++ ++ C D G L +M
Sbjct: 1407 TTEQTESKVEGSENPAAKEKSDIK-EETDIADKDTKQDC-DAEAETGSVKCELKDIEMST 1464
Query: 1845 KYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP 1904
+ ++ + E D+SE SS+ S+ +S AS+ T R
Sbjct: 1465 DVDPKSISEKGSEEDEEEKLDDDDKSEESSQPEAGAVSQGKNFDEESNASMSTARDETRD 1524
Query: 1905 G-HTED 1909
G + ED
Sbjct: 1525 GFYMED 1530
Score = 42 (19.8 bits), Expect = 1.5e-60, Sum P(3) = 1.5e-60
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 791 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 820
Score = 40 (19.1 bits), Expect = 4.0e-60, Sum P(3) = 4.0e-60
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 1736 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEI-AVSGDSHMDHQQSGSWTHDRDEGE 1794
V P S + GS E + K +E + E AVS + D + + S + RDE
Sbjct: 1466 VDPKSISEKGSEEDEEEKLDDDDKS--EESSQPEAGAVSQGKNFDEESNASMSTARDETR 1523
Query: 1795 D 1795
D
Sbjct: 1524 D 1524
Score = 37 (18.1 bits), Expect = 5.1e-60, Sum P(3) = 5.1e-60
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 1494 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 1532
+ N+ Y ++++ GR+ ++ T ++ T+L
Sbjct: 847 VEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTIL 885
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 400 (145.9 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 103/263 (39%), Positives = 146/263 (55%)
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I +LH +L P MLRR DV +P K +++R +SA+Q Y K T D +
Sbjct: 833 IEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYY---KNILTRNFDALNV 889
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK--------DFLVKSCG 1328
K +L N MEL+K CNHP L + K L+K+ G
Sbjct: 890 KN---------GGTQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAG 940
Query: 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388
K +L ++L KL+ GHRVL+FS MT +LDILE++ Y RIDG+ + + R+ AI
Sbjct: 941 KFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAID 1000
Query: 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448
+N+ + F+FLLS RA G G+NL +ADTVIIYD D NP N+ QA +RAHR+GQK +V
Sbjct: 1001 RYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVM 1060
Query: 1449 V---IYMEAVVDKISSHQKEDEL 1468
+ + +V ++I+S K+ L
Sbjct: 1061 IYRFVTKGSVEERITSVAKKKML 1083
Score = 198 (74.8 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 41/106 (38%), Positives = 59/106 (55%)
Query: 992 QPSMLR--AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
QP + G L YQ+ G+ W+ ++N + ILADEMGLGKTVQ + + LM+
Sbjct: 605 QPDFISETGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHT 664
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE 1095
GP LI P + ++NW+ E W P + YVG D+ SR+ +E
Sbjct: 665 KGPFLIAAPLSTIINWEREAELWCPDFYVVTYVG--DRESRMVIRE 708
Score = 194 (73.4 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 1099 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG 1158
LKF+VL+T+YE I D++ LS +DW +++DEA R+K+ +S ++L Y Q R+LLTG
Sbjct: 733 LKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTG 792
Query: 1159 TPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKE 1197
TPLQN+ P+ F+ ++F FS+ KE
Sbjct: 793 TPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSE-ISKE 830
Score = 61 (26.5 bits), Expect = 1.5e-25, Sum P(4) = 1.5e-25
Identities = 35/139 (25%), Positives = 59/139 (42%)
Query: 1408 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKR--EVKVIYMEAVVDKISSHQ 1463
G+ ++ D V+ + + K EE V A G K+ E ++++ +A VD +
Sbjct: 1098 GKSMSKTELDDVLRWGTEELFKEEEAPVEGADGEGTSSKKPNEQEIVWDDAAVDFLLDRN 1157
Query: 1464 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1523
KE+E + G E + Y+ S + N + D AD+ + + T E+
Sbjct: 1158 KEEEGQDG-----EKKEHWTNEYLSSFKVATYNTKEA---DDADDDEDETEVIKEGTEEQ 1209
Query: 1524 RRMTLETLL-HDEERYQET 1541
E LL H E+ QET
Sbjct: 1210 DPNYWEKLLKHHYEQDQET 1228
Score = 48 (22.0 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 197 EQFGRGEKQMEQPQQQ-VSDQKGEPKPPSQQTLGGQ 231
E G E+++E + Q V + KPP ++ GG+
Sbjct: 30 EDVGEDEEEVETEESQGVPTTSEKKKPPPKKKKGGK 65
Score = 42 (19.8 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 19/94 (20%), Positives = 41/94 (43%)
Query: 1567 QMDEEFGW-IEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVD---SGE 1622
++D+ W EE+ + ++ P + + E + SKKP++ + + VD
Sbjct: 1105 ELDDVLRWGTEELFKEEEAP--VEGADGEGTS-----SKKPNEQEIVWDDAAVDFLLDRN 1157
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
E E + G K + + N ++ Y+ +D+
Sbjct: 1158 KEEEGQDGEKKEHWTNEYLSSFKVATYNTKEADD 1191
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE 1767
L +++ ++P +F L + A +SK D++E+
Sbjct: 802 LFHLLNFLAPDRFNQLESFTAEFSEISKE--DQIEK 835
Score = 38 (18.4 bits), Expect = 5.0e-44, Sum P(5) = 5.0e-44
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 543 LRHLESNGKDA 553
LRH SNG DA
Sbjct: 627 LRHCWSNGTDA 637
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 400 (145.9 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 103/263 (39%), Positives = 146/263 (55%)
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I +LH +L P MLRR DV +P K +++R +SA+Q Y K T D +
Sbjct: 833 IEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYY---KNILTRNFDALNV 889
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK--------DFLVKSCG 1328
K +L N MEL+K CNHP L + K L+K+ G
Sbjct: 890 KN---------GGTQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAG 940
Query: 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388
K +L ++L KL+ GHRVL+FS MT +LDILE++ Y RIDG+ + + R+ AI
Sbjct: 941 KFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAID 1000
Query: 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448
+N+ + F+FLLS RA G G+NL +ADTVIIYD D NP N+ QA +RAHR+GQK +V
Sbjct: 1001 RYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVM 1060
Query: 1449 V---IYMEAVVDKISSHQKEDEL 1468
+ + +V ++I+S K+ L
Sbjct: 1061 IYRFVTKGSVEERITSVAKKKML 1083
Score = 198 (74.8 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 41/106 (38%), Positives = 59/106 (55%)
Query: 992 QPSMLR--AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
QP + G L YQ+ G+ W+ ++N + ILADEMGLGKTVQ + + LM+
Sbjct: 605 QPDFISETGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHT 664
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQE 1095
GP LI P + ++NW+ E W P + YVG D+ SR+ +E
Sbjct: 665 KGPFLIAAPLSTIINWEREAELWCPDFYVVTYVG--DRESRMVIRE 708
Score = 194 (73.4 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 1099 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG 1158
LKF+VL+T+YE I D++ LS +DW +++DEA R+K+ +S ++L Y Q R+LLTG
Sbjct: 733 LKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTG 792
Query: 1159 TPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKE 1197
TPLQN+ P+ F+ ++F FS+ KE
Sbjct: 793 TPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSE-ISKE 830
Score = 61 (26.5 bits), Expect = 1.5e-25, Sum P(4) = 1.5e-25
Identities = 35/139 (25%), Positives = 59/139 (42%)
Query: 1408 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKR--EVKVIYMEAVVDKISSHQ 1463
G+ ++ D V+ + + K EE V A G K+ E ++++ +A VD +
Sbjct: 1098 GKSMSKTELDDVLRWGTEELFKEEEAPVEGADGEGTSSKKPNEQEIVWDDAAVDFLLDRN 1157
Query: 1464 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1523
KE+E + G E + Y+ S + N + D AD+ + + T E+
Sbjct: 1158 KEEEGQDG-----EKKEHWTNEYLSSFKVATYNTKEA---DDADDDEDETEVIKEGTEEQ 1209
Query: 1524 RRMTLETLL-HDEERYQET 1541
E LL H E+ QET
Sbjct: 1210 DPNYWEKLLKHHYEQDQET 1228
Score = 48 (22.0 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 197 EQFGRGEKQMEQPQQQ-VSDQKGEPKPPSQQTLGGQ 231
E G E+++E + Q V + KPP ++ GG+
Sbjct: 30 EDVGEDEEEVETEESQGVPTTSEKKKPPPKKKKGGK 65
Score = 42 (19.8 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 19/94 (20%), Positives = 41/94 (43%)
Query: 1567 QMDEEFGW-IEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVD---SGE 1622
++D+ W EE+ + ++ P + + E + SKKP++ + + VD
Sbjct: 1105 ELDDVLRWGTEELFKEEEAP--VEGADGEGTS-----SKKPNEQEIVWDDAAVDFLLDRN 1157
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
E E + G K + + N ++ Y+ +D+
Sbjct: 1158 KEEEGQDGEKKEHWTNEYLSSFKVATYNTKEADD 1191
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 1732 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE 1767
L +++ ++P +F L + A +SK D++E+
Sbjct: 802 LFHLLNFLAPDRFNQLESFTAEFSEISKE--DQIEK 835
Score = 38 (18.4 bits), Expect = 5.0e-44, Sum P(5) = 5.0e-44
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 543 LRHLESNGKDA 553
LRH SNG DA
Sbjct: 627 LRHCWSNGTDA 637
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 688 (247.2 bits), Expect = 1.8e-60, Sum P(4) = 1.8e-60
Identities = 179/475 (37%), Positives = 250/475 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q + ++ + +G +GP LII P +
Sbjct: 460 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPLS 518
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYE 1109
+ NW+ E W ++ I Y G++ R + E+ KF+V++TT+E
Sbjct: 519 TITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFE 577
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L K+ W +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 578 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 637
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + AF + F L+TE++V +L IL+P ML
Sbjct: 638 SLLNFLEPSQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMML 679
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR +DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 680 RRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS----KGANQHN------ 729
Query: 1290 VYKTLNNRCMELRKTCNHPLL----NYPYFSDLSK-------DF----LVKSCGKLWILD 1334
L N MELRK CNHP L D K DF ++++ GKL ++D
Sbjct: 730 -MPNLINTMMELRKCCNHPYLISGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 788
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F D
Sbjct: 789 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 848
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 849 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 903
Score = 55 (24.4 bits), Expect = 1.8e-60, Sum P(4) = 1.8e-60
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 565 PKE--EAYAGDDKAAVSPVGQGMSAVTKEPAPVVVP-GKEEQQAPVSSVKSDQEVECGLL 621
P+E E G D AA + + ++ + P PV GK + + V S++ DQ + L
Sbjct: 163 PREAKEKRGGPDAAARTKSRK--ASKEQGPTPVEKKKGKRKSETAVESLELDQGLPNPSL 220
Query: 622 RTQQQSDFPADRGK 635
R+ ++S AD K
Sbjct: 221 RSPEESTESADSQK 234
Score = 48 (22.0 bits), Expect = 1.8e-60, Sum P(4) = 1.8e-60
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 1657
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 1045 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1077
Score = 41 (19.5 bits), Expect = 1.8e-60, Sum P(4) = 1.8e-60
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1839 PFQMDNKYPAQLRTDTEMKAHGESN 1863
P D ++ AQ R +HG++N
Sbjct: 2696 PAPPDREHAAQAREGGPQDSHGDTN 2720
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 426 (155.0 bits), Expect = 1.9e-60, Sum P(2) = 1.9e-60
Identities = 99/276 (35%), Positives = 157/276 (56%)
Query: 990 MRQPSMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+ QPS+L +L+ YQ VGL W+ ++ + LNGILADEMGLGKT+Q +A +AYL + +G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EG 543
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTT 1107
N GPHLI+VP + + NW E++ W P++ + Y G++++R ++ ++ ++NV+VTT
Sbjct: 544 NKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTT 603
Query: 1108 YEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164
Y + DRS ++ Y I DE +K+ S+ + L RLLLTGTP+QN+
Sbjct: 604 YNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663
Query: 1165 XXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P +F + + + F + T +AD+ + +++ I H QI+
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQII 715
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+PF+LRR E+V LPPK + C MS Q +Y
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY 751
Score = 290 (107.1 bits), Expect = 1.9e-60, Sum P(2) = 1.9e-60
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 1312 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 837 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 896
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 897 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1431 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 1479
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1009
Score = 107 (42.7 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 704 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY-----LGLFN- 756
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 757 -------RLKKS-INNIEKSTEMCNVMMQLRKMANHPLLHRQYYT 793
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 426 (155.0 bits), Expect = 1.9e-60, Sum P(2) = 1.9e-60
Identities = 99/276 (35%), Positives = 157/276 (56%)
Query: 990 MRQPSMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+ QPS+L +L+ YQ VGL W+ ++ + LNGILADEMGLGKT+Q +A +AYL + +G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EG 543
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTT 1107
N GPHLI+VP + + NW E++ W P++ + Y G++++R ++ ++ ++NV+VTT
Sbjct: 544 NKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTT 603
Query: 1108 YEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164
Y + DRS ++ Y I DE +K+ S+ + L RLLLTGTP+QN+
Sbjct: 604 YNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663
Query: 1165 XXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P +F + + + F + T +AD+ + +++ I H QI+
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQII 715
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+PF+LRR E+V LPPK + C MS Q +Y
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY 751
Score = 290 (107.1 bits), Expect = 1.9e-60, Sum P(2) = 1.9e-60
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 1312 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 837 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 896
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 897 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1431 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 1479
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1009
Score = 107 (42.7 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 704 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY-----LGLFN- 756
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 757 -------RLKKS-INNIEKSTEMCNVMMQLRKMANHPLLHRQYYT 793
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 426 (155.0 bits), Expect = 1.9e-60, Sum P(2) = 1.9e-60
Identities = 99/276 (35%), Positives = 157/276 (56%)
Query: 990 MRQPSMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+ QPS+L +L+ YQ VGL W+ ++ + LNGILADEMGLGKT+Q +A +AYL + +G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EG 543
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTT 1107
N GPHLI+VP + + NW E++ W P++ + Y G++++R ++ ++ ++NV+VTT
Sbjct: 544 NKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTT 603
Query: 1108 YEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164
Y + DRS ++ Y I DE +K+ S+ + L RLLLTGTP+QN+
Sbjct: 604 YNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663
Query: 1165 XXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P +F + + + F + T +AD+ + +++ I H QI+
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQII 715
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+PF+LRR E+V LPPK + C MS Q +Y
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY 751
Score = 290 (107.1 bits), Expect = 1.9e-60, Sum P(2) = 1.9e-60
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 1312 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 837 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 896
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 897 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1431 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 1479
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1009
Score = 107 (42.7 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 704 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY-----LGLFN- 756
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 757 -------RLKKS-INNIEKSTEMCNVMMQLRKMANHPLLHRQYYT 793
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 697 (250.4 bits), Expect = 1.9e-60, Sum P(4) = 1.9e-60
Identities = 196/548 (35%), Positives = 290/548 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q +A + + G +GP L+I P +
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLS 869
Query: 1061 VLVNWKSELHKWLPSVSCIYY-------------VGAKDQRSRLFSQEVAALKFNVLVTT 1107
+ NW+ E + W + +Y+ + KD R RL A KF+ L+TT
Sbjct: 870 TITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP---GAYKFDALITT 926
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXX 1167
+E I+ D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 927 FEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEE 986
Query: 1168 XXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P F + F F L+TE++V +L IL+P
Sbjct: 987 LFSLLHFLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPM 1028
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287
MLRR EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 1029 MLRRLKEDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHT 1079
Query: 1288 AKVYKTLNNRCMELRKTCNHP-LLN-------YPYFSD----LSKDF----LVKSCGKLW 1331
L N MELRK CNHP L+N F + + DF +V+S GKL
Sbjct: 1080 NM--PNLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLV 1137
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
++D++L KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+
Sbjct: 1138 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1197
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
DSD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1198 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-Y 1256
Query: 1452 MEAVVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMAD 1507
++ + +S+++E D+ L+ G + ++G+D G+I G IQQ+ +
Sbjct: 1257 R--LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIE 1305
Query: 1508 EVINAGRF 1515
+++ G +
Sbjct: 1306 DLLRKGAY 1313
Score = 49 (22.3 bits), Expect = 1.9e-60, Sum P(4) = 1.9e-60
Identities = 35/182 (19%), Positives = 72/182 (39%)
Query: 1776 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 1834
++M + Q+G+ + Q R S + +RP VE+P E + P
Sbjct: 1966 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKPPEETAAQVP----S 2021
Query: 1835 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 1894
L +++++ A+ R + +R S+ + RN+P K+ + S +
Sbjct: 2022 LESLTLKLEHEVVARSRPTPQ------DYEMRVAPSDTTPLVSRNVPPVKLEDEDDSDSE 2075
Query: 1895 LKTGRLN---CMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTVSLLHY 1951
L +L+ + ++ ES D K S + S K+ D + + ++++
Sbjct: 2076 LDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRS-KLYD--EESLLSLTMSQD 2132
Query: 1952 GF 1953
GF
Sbjct: 2133 GF 2134
Score = 49 (22.3 bits), Expect = 1.2e-59, Sum P(5) = 1.2e-59
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 205 QMEQPQQQV-------SDQKGEPKPPSQQ--TLGGQGMAANIIRPMQAAQHQQSI 250
Q++QPQQ++ + Q P PPS Q TL A I+ P Q+ + S+
Sbjct: 343 QVQQPQQKIQIVPQPPASQPQPPPPPSTQPVTLSSV-QQAQIMGPGQSPGQRLSV 396
Score = 45 (20.9 bits), Expect = 1.9e-60, Sum P(4) = 1.9e-60
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 561 VQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGL 620
+Q +P+ A + P Q ++ + + A ++ PG Q+P + +V +
Sbjct: 351 IQIVPQPPA--SQPQPPPPPSTQPVTLSSVQQAQIMGPG----QSPGQRLSVPLKV---V 401
Query: 621 LRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQA 655
L+ Q S A G SV +SA + + PA +
Sbjct: 402 LQPQAGSSQGASSGLSVVKVLSASEVAALSSPASS 436
Score = 45 (20.9 bits), Expect = 3.2e-59, Sum P(5) = 3.2e-59
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 1764 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 1808
EL+ +++ S S S S T DE EDE+ + R RS
Sbjct: 2075 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEKEEKLSADRSRS 2116
Score = 41 (19.5 bits), Expect = 8.3e-59, Sum P(5) = 8.3e-59
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 277 QPANASLIAQLI--PIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGEN-SP 331
QPA I + P + +IV A++ P S PV+ V I G SP
Sbjct: 333 QPAKVVTIQLQVQQPQQKIQIVPQPPASQPQPPPPPSTQPVTLSSVQQAQIMGPGQSP 390
Score = 39 (18.8 bits), Expect = 1.9e-60, Sum P(4) = 1.9e-60
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 1464 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 1516
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1413 KDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1472
Query: 1517 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 1550
+R T + R + + LLH +E + + D+ S E
Sbjct: 1473 RRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAE 1513
Score = 39 (18.8 bits), Expect = 1.2e-59, Sum P(5) = 1.2e-59
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 1657
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1397 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1430
Score = 38 (18.4 bits), Expect = 1.7e-58, Sum P(5) = 1.7e-58
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1830 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859
LH RGD ++ F D PA+ E++ H
Sbjct: 1493 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1523
Score = 37 (18.1 bits), Expect = 1.2e-59, Sum P(5) = 1.2e-59
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 611 KSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAAR 668
+ +Q + L + S P + G+ + S+ + ++ +KP ++ T+ K G ++
Sbjct: 475 RGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSK 532
Score = 37 (18.1 bits), Expect = 2.2e-58, Sum P(5) = 2.2e-58
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 1589
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 2301 EVQCMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 2346
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 697 (250.4 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 195/545 (35%), Positives = 290/545 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q +A + + G +GP L+I P +
Sbjct: 428 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLS 486
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E
Sbjct: 487 TITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFE 545
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 546 MILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 605
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 606 SLLHFLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMML 647
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 648 RRLKEDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM 698
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N F + + DF +V+S GKL ++D
Sbjct: 699 --PNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLID 756
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ D
Sbjct: 757 KLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPD 816
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 817 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR-- 873
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1510
++ + +S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++
Sbjct: 874 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLL 924
Query: 1511 NAGRF 1515
G +
Sbjct: 925 RKGAY 929
Score = 49 (22.3 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 35/182 (19%), Positives = 72/182 (39%)
Query: 1776 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 1834
++M + Q+G+ + Q R S + +RP VE+P E + P
Sbjct: 1580 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKPPEETAAQVP----S 1635
Query: 1835 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 1894
L +++++ A+ R + +R S+ + RN+P K+ + S +
Sbjct: 1636 LESLTLKLEHEVVARSRPTPQ------DYEMRVAPSDTTPLVSRNVPPVKLEDEDDSDSE 1689
Query: 1895 LKTGRLN---CMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRVCTVSLLHY 1951
L +L+ + ++ ES D K S + S K+ D + + ++++
Sbjct: 1690 LDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRS-KLYD--EESLLSLTMSQD 1746
Query: 1952 GF 1953
GF
Sbjct: 1747 GF 1748
Score = 45 (20.9 bits), Expect = 5.8e-60, Sum P(4) = 5.8e-60
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 1764 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 1808
EL+ +++ S S S S T DE EDE+ + R RS
Sbjct: 1689 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEKEEKLSADRSRS 1730
Score = 40 (19.1 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 620 LLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQA 655
+L+ Q S A G SV +SA + + PA +
Sbjct: 18 VLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASS 53
Score = 39 (18.8 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 1657
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1013 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1046
Score = 39 (18.8 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 1464 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 1516
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1029 KDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1088
Query: 1517 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 1550
+R T + R + + LLH +E + + D+ S E
Sbjct: 1089 RRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAE 1129
Score = 38 (18.4 bits), Expect = 3.1e-59, Sum P(4) = 3.1e-59
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1830 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859
LH RGD ++ F D PA+ E++ H
Sbjct: 1109 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1139
Score = 37 (18.1 bits), Expect = 4.6e-60, Sum P(4) = 4.6e-60
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 611 KSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAAR 668
+ +Q + L + S P + G+ + S+ + ++ +KP ++ T+ K G ++
Sbjct: 92 RGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSKTSGTSKTKGKSK 149
Score = 37 (18.1 bits), Expect = 3.9e-59, Sum P(4) = 3.9e-59
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 1589
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 1915 EVQCMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 1960
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 698 (250.8 bits), Expect = 2.4e-60, Sum P(4) = 2.4e-60
Identities = 195/545 (35%), Positives = 291/545 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q +A + + G +GP L+I P +
Sbjct: 813 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLS 871
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E
Sbjct: 872 TITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFE 930
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 931 MILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 990
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 991 SLLHFLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMML 1032
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 1033 RRLKEDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM 1083
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N F + + +DF +V+S GKL ++D
Sbjct: 1084 --PNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLID 1141
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ D
Sbjct: 1142 KLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPD 1201
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1202 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR-- 1258
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1510
++ + +S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++
Sbjct: 1259 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLL 1309
Query: 1511 NAGRF 1515
G +
Sbjct: 1310 RKGAY 1314
Score = 46 (21.3 bits), Expect = 2.4e-60, Sum P(4) = 2.4e-60
Identities = 20/93 (21%), Positives = 38/93 (40%)
Query: 561 VQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGL 620
+Q +P+ + + P Q ++ + + A ++ PG+ Q +K +
Sbjct: 351 IQIVPQPPSSQPQPQPQPPPSAQPLTLSSVQQAQIMGPGQNPGQRLSVPLKM-------V 403
Query: 621 LRTQQQSDFPADRGKSVAPQVSACDAVQVKKPA 653
L+ Q S A G SV +SA + + PA
Sbjct: 404 LQPQAGSSQGASSGLSVVKVLSASEVAALSSPA 436
Score = 45 (20.9 bits), Expect = 1.9e-59, Sum P(5) = 1.9e-59
Identities = 27/132 (20%), Positives = 56/132 (42%)
Query: 546 LESNGKDAQAVSS--SNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQ 603
L+ +Q SS S V+ L E A A+ +P G + + +E + K+E+
Sbjct: 404 LQPQAGSSQGASSGLSVVKVLSASEVAALSSPASCAPHTAGKTGM-EENRRLEHQKKQEK 462
Query: 604 QAPV-------SSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQAT 656
+ + + +Q + L + S P + G+ + S+ + ++ +KP ++
Sbjct: 463 ANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSK 522
Query: 657 TALQPKDVGAAR 668
TA K G ++
Sbjct: 523 TAAASKTKGKSK 534
Score = 44 (20.5 bits), Expect = 2.4e-60, Sum P(4) = 2.4e-60
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 1764 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR 1814
EL+ +++ S S S S T DE EDE+ + K+ RS RP+
Sbjct: 2073 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEK--EEKLTADRS---RPK 2115
Score = 43 (20.2 bits), Expect = 4.9e-60, Sum P(4) = 4.9e-60
Identities = 18/88 (20%), Positives = 33/88 (37%)
Query: 541 DQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGK 600
DQ+ + G D S+S++ P+E A K + +P + ++ P
Sbjct: 47 DQMNQ-DGGGGDVGNSSASDLVPPPEETASTELPKESTAPAPESLTLHDYTTQPT----- 100
Query: 601 EEQQAPVSSVKSDQEVECGLLRTQQQSD 628
Q+ P V GLL+ + +
Sbjct: 101 -SQEQPAQPVLQTSTPTAGLLQVSKSQE 127
Score = 41 (19.5 bits), Expect = 2.4e-60, Sum P(4) = 2.4e-60
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 1464 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 1516
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1414 KDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1473
Query: 1517 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 1550
+R T + R + + LLH +E + + D+ S E
Sbjct: 1474 RRMTERDVETICRAILVYCLLHYRGDENIKSFIWDLISPAE 1514
Score = 41 (19.5 bits), Expect = 1.9e-59, Sum P(5) = 1.9e-59
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 205 QMEQPQQQV--------SDQKGEPKPP-SQQTLGGQGMA-ANIIRPMQAAQHQQSI 250
Q++QPQQ++ S + +P+PP S Q L + A I+ P Q + S+
Sbjct: 343 QVQQPQQKIQIVPQPPSSQPQPQPQPPPSAQPLTLSSVQQAQIMGPGQNPGQRLSV 398
Score = 40 (19.1 bits), Expect = 6.4e-59, Sum P(5) = 6.4e-59
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 294 RIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSP 331
+I + + E ++ P P P+ + V P GE P
Sbjct: 594 KITDDEEEEEVDVTGPIKPEPILPEPVQEPD--GETLP 629
Score = 39 (18.8 bits), Expect = 3.1e-59, Sum P(5) = 3.1e-59
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 1657
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1398 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1431
Score = 39 (18.8 bits), Expect = 1.0e-58, Sum P(5) = 1.0e-58
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1830 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859
LH RGD ++ F D PA+ E++ H
Sbjct: 1494 LHYRGDENIKSFIWDLISPAENGKTKELQNH 1524
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 426 (155.0 bits), Expect = 2.4e-60, Sum P(2) = 2.4e-60
Identities = 99/276 (35%), Positives = 157/276 (56%)
Query: 990 MRQPSMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+ QPS+L +L+ YQ VGL W+ ++ + LNGILADEMGLGKT+Q +A +AYL + +G
Sbjct: 488 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EG 546
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTT 1107
N GPHLI+VP + + NW E++ W P++ + Y G++++R ++ ++ ++NV+VTT
Sbjct: 547 NKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTT 606
Query: 1108 YEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164
Y + DRS ++ Y I DE +K+ S+ + L RLLLTGTP+QN+
Sbjct: 607 YNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 666
Query: 1165 XXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P +F + + + F + T +AD+ + +++ I H QI+
Sbjct: 667 LLELMSLLNFVMPHMFSSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQII 718
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+PF+LRR E+V LPPK + C MS Q +Y
Sbjct: 719 KPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY 754
Score = 289 (106.8 bits), Expect = 2.4e-60, Sum P(2) = 2.4e-60
Identities = 64/140 (45%), Positives = 90/140 (64%)
Query: 1312 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 840 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 899
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 900 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 958
Query: 1431 EEQAVARAHRIGQKREVKVI 1450
++QA R HR+GQ +EV VI
Sbjct: 959 DKQAEDRCHRVGQTKEVLVI 978
Score = 107 (42.7 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 707 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY-----LGLFN- 759
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 760 -------RLKKS-INNMEKNTEMCNVMMQLRKMANHPLLHRQYYT 796
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 690 (248.0 bits), Expect = 3.1e-60, Sum P(3) = 3.1e-60
Identities = 188/529 (35%), Positives = 276/529 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ GL W+L + N+ N ILADEMGLGKT+Q + + Y + G GP LII P +
Sbjct: 861 LREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLS 919
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G+ R + E+ A +F ++TT+E
Sbjct: 920 TIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFE 978
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ +L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 979 MILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELF 1038
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1039 SLLHFLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1080
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE L PK ++ ++ IQ Y R E + K Q
Sbjct: 1081 RRLKEDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTN 1130
Query: 1290 VYKTLNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILD 1334
V L N MELRK CNHP L Y P SD +++S GKL ++D
Sbjct: 1131 V-PNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 1189
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ D
Sbjct: 1190 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1249
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1250 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR-- 1306
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
+V + +S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 1307 LVTR-NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIE 1354
Score = 50 (22.7 bits), Expect = 3.1e-60, Sum P(3) = 3.1e-60
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 1857 KAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKE 1916
K ES+S SE SS S R+ S +++ S + ++G + A+
Sbjct: 2126 KRGSESSSDSDSDSERSSCSSRSSSS---SSSSSSCSHSRSGSSSSSSSSCSSASSSSSS 2182
Query: 1917 SWDGKIANASGSSNFSAKMSDVIQRR 1942
S +++S SS S + +Q+R
Sbjct: 2183 SSSSSSSSSSSSSEESDSEEEEVQKR 2208
Score = 48 (22.0 bits), Expect = 4.5e-59, Sum P(4) = 4.5e-59
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 1737 SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM---DHQQSGSWTHDRDEG 1793
S S S S+ + S S+ E EE + G HM D + S + +DE
Sbjct: 2174 SSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKRAEGTPHMKAYDEESVASLSTTQDET 2233
Query: 1794 ED 1795
+D
Sbjct: 2234 QD 2235
Score = 43 (20.2 bits), Expect = 4.5e-59, Sum P(4) = 4.5e-59
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 1867 HDQSEPSSKSRRNLPSRKIANAPKSRASLKT-----GRLNCMPGHTEDAADHFKESWDGK 1921
HDQS SK ++++ ++ K LK G P +ED A ++ + +
Sbjct: 2330 HDQSTQMSKVKKHVREKEFTVKIKDEGGLKLTFQKQGLTQRRPLDSEDCAPG-QQQYLTR 2388
Query: 1922 IANASGSSNFS 1932
+ + G+S S
Sbjct: 2389 LRDLQGASESS 2399
Score = 39 (18.8 bits), Expect = 3.1e-60, Sum P(3) = 3.1e-60
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 612 SDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPK 662
++Q+ +C LR+QQ + + G++ Q V V P + + P+
Sbjct: 168 NEQQTQCTSLRSQQNRN-NLNPGQNSLSQSKTFMDVNVSGPHRVSVNHPPQ 217
Score = 37 (18.1 bits), Expect = 7.2e-59, Sum P(4) = 7.2e-59
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 401 IHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSS 441
++P Q SL+ + + V N SGP + + Q+N +S
Sbjct: 186 LNPGQNSLSQSKTF---MDV-NVSGPHRVSVNHPPQMNNAS 222
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 685 (246.2 bits), Expect = 3.6e-60, Sum P(3) = 3.6e-60
Identities = 189/530 (35%), Positives = 279/530 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q + + + G GP L+I P +
Sbjct: 755 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLQEVYNV-GIRGPFLVIAPLS 813
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ I Y G+ R + E+ A KF+ L+TT+E
Sbjct: 814 TITNWEREFGSWT-QMNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDALITTFE 872
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
++ D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 873 MVLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 932
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 933 SLLHFLEPTQFSSEAEFLKDFGD---------------LKTEEQV---QKLQAILKPMML 974
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 975 RRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT----KGASQSNT----- 1025
Query: 1290 VYKTLNNRCMELRKTCNHPLL----NYPYFSDLSK-------DF----LVKSCGKLWILD 1334
L N MELRK CNHP L S+ + DF +V+S GKL ++D
Sbjct: 1026 --PNLLNTMMELRKCCNHPYLITGAEEKIISEFREATPVVPPDFHVQAMVRSSGKLVLID 1083
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ D
Sbjct: 1084 KLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPD 1143
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 1144 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVK-IYR-- 1200
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYI-GSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G+D ++ G I+ + I+
Sbjct: 1201 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRDNHLSGPIQQFTKKEIE 1249
Score = 46 (21.3 bits), Expect = 3.6e-60, Sum P(3) = 3.6e-60
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 381 GRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYL 434
GRD + +GN L P+ P + + PG D V N+ + ++ Q L
Sbjct: 26 GRDGPDTIDDALGLGNVLGPLEPITDRVGL-PGAD----VGNNEVKQQTESQVL 74
Score = 42 (19.8 bits), Expect = 3.6e-60, Sum P(3) = 3.6e-60
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
I+T R R K+ ++ DD++ E+S+ SD+
Sbjct: 1341 IDTPRIR----KQTRHFTNKDDDMVEFSDLESDD 1370
Score = 41 (19.5 bits), Expect = 1.2e-59, Sum P(3) = 1.2e-59
Identities = 26/135 (19%), Positives = 47/135 (34%)
Query: 309 PSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXX 368
P +P +S ++ P N N + + +P G T A
Sbjct: 75 PDNPALMSATEIMQPIQLPTNQETLNQGNPFMGASNAGAPKIMILKAPAGMTVGACPVTQ 134
Query: 369 XXXISLQQFSVHGRD------NQVPSRQPVAIGNGLPPIHP-PQTSLNMTPGVDQPL--- 418
++ Q + G+ P R V+I +G + P T + G +P+
Sbjct: 135 IQTLTPHQAANGGKVAFAKVLTGTPLRPGVSIVSGNTVLAKMPSTGVAGQVGAVRPVRQL 194
Query: 419 ---PVKNSSGPENSQ 430
PV+ S+ P +S+
Sbjct: 195 LLQPVRASAAPGSSE 209
Score = 40 (19.1 bits), Expect = 5.8e-60, Sum P(3) = 5.8e-60
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1650 SEASSDERNGYPVQ 1663
SE SSDE NG V+
Sbjct: 1960 SEDSSDESNGVKVK 1973
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 423 (154.0 bits), Expect = 4.0e-60, Sum P(2) = 4.0e-60
Identities = 101/275 (36%), Positives = 155/275 (56%)
Query: 992 QPSMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY 1050
QPS+L +L+ YQ VGL W+ ++ + LNGILADEMGLGKT+Q +A +AYL + +GN
Sbjct: 489 QPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGNK 547
Query: 1051 GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYE 1109
GPHLI+VP + + NW E++ W P++ + Y G++++R ++ ++ ++NV+VTTY
Sbjct: 548 GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYN 607
Query: 1110 FIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXX 1166
+ DRS ++ Y I DE +K+ S+ + L RLLLTGTP+QN+
Sbjct: 608 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 667
Query: 1167 XXXXXXXXXXPEVFDNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225
P +F + + FS K P AD+ + +++ I H QI++
Sbjct: 668 ELMSLLNFVMPHMFSSSTSEIRRMFSS---KTKP---ADEQSIYEKER--IAHA-KQIIK 718
Query: 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
PF+LRR E+V LPPK + C MS Q +Y
Sbjct: 719 PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLY 753
Score = 290 (107.1 bits), Expect = 4.0e-60, Sum P(2) = 4.0e-60
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 1312 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 839 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 898
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 899 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 957
Query: 1431 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 1479
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 958 DKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1011
Score = 105 (42.0 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 35/105 (33%), Positives = 52/105 (49%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y + L+
Sbjct: 706 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLY--MNLFNRLKK 762
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
+ ++KN + N M+LRK NHPLL+ Y++
Sbjct: 763 SINN----MEKNT--------EMCNVMMQLRKMANHPLLHRQYYT 795
Score = 42 (19.8 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 959 IRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLR 997
IR F P D S+ + +AHA +++++ P +LR
Sbjct: 688 IRRMFSSKTKPADEQSIYEKERIAHA--KQIIK-PFILR 723
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 690 (248.0 bits), Expect = 4.1e-60, Sum P(4) = 4.1e-60
Identities = 188/529 (35%), Positives = 276/529 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ GL W+L + N+ N ILADEMGLGKT+Q + + Y + G GP LII P +
Sbjct: 862 LREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLS 920
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G+ R + E+ A +F ++TT+E
Sbjct: 921 TIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFE 979
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ +L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 980 MILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELF 1039
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1040 SLLHFLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1081
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE L PK ++ ++ IQ Y R E + K Q
Sbjct: 1082 RRLKEDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTN 1131
Query: 1290 VYKTLNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILD 1334
V L N MELRK CNHP L Y P SD +++S GKL ++D
Sbjct: 1132 V-PNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 1190
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ D
Sbjct: 1191 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1250
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1251 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR-- 1307
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
+V + +S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 1308 LVTR-NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIE 1355
Score = 52 (23.4 bits), Expect = 4.1e-60, Sum P(4) = 4.1e-60
Identities = 23/95 (24%), Positives = 40/95 (42%)
Query: 1857 KAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKE 1916
K ES+S SE SS S R+ S +++ S + ++G + A+
Sbjct: 2127 KRGSESSSESDSDSERSSCSSRSSSS---SSSSSSCSHSRSGSSSSSSSSCSSASSSSSS 2183
Query: 1917 SWDGKIANASGSSNFSAKMSDVIQRRVCTVSLLHY 1951
S +++S SS S + +Q+R T + Y
Sbjct: 2184 SSSSSSSSSSSSSEESDSEEEEVQKREGTPHVKAY 2218
Score = 47 (21.6 bits), Expect = 4.1e-60, Sum P(4) = 4.1e-60
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 612 SDQEVECGLLRTQQQSDF--PADRGKSVAPQ-----VSACDAVQVKKPAQATTA 658
S+Q+ +C LR+QQ + P S + VS V V P+Q T A
Sbjct: 168 SEQQTQCTSLRSQQNRNNLNPGQNSLSQSKNFMDVNVSGPHRVSVNHPSQITNA 221
Score = 43 (20.2 bits), Expect = 3.5e-59, Sum P(4) = 3.5e-59
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 1860 GESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
G HDQS SK ++++ ++ K LK
Sbjct: 2323 GAGGKEEHDQSTQMSKVKKHVREKEFTVKIKDEGGLK 2359
Score = 41 (19.5 bits), Expect = 4.1e-60, Sum P(4) = 4.1e-60
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1617 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 1441 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 1475
Score = 38 (18.4 bits), Expect = 7.2e-59, Sum P(4) = 7.2e-59
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 1603 SKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
S S + S+ S E ++E + K + P+ K D+E + DE
Sbjct: 2179 SSSSSSSSSSSSSSSSSSEESDSEEEEVQKREGTPHVKAYDEESVASLSTTQDE 2232
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 697 (250.4 bits), Expect = 4.5e-60, Sum P(4) = 4.5e-60
Identities = 196/548 (35%), Positives = 290/548 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q +A + + G +GP L+I P +
Sbjct: 764 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLS 822
Query: 1061 VLVNWKSELHKWLPSVSCIYY-------------VGAKDQRSRLFSQEVAALKFNVLVTT 1107
+ NW+ E + W + +Y+ + KD R RL A KF+ L+TT
Sbjct: 823 TITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP---GAYKFDALITT 879
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXX 1167
+E I+ D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 880 FEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEE 939
Query: 1168 XXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P F + F F L+TE++V +L IL+P
Sbjct: 940 LFSLLHFLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPM 981
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287
MLRR EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 982 MLRRLKEDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHT 1032
Query: 1288 AKVYKTLNNRCMELRKTCNHP-LLN-------YPYFSD----LSKDF----LVKSCGKLW 1331
L N MELRK CNHP L+N F + + DF +V+S GKL
Sbjct: 1033 NM--PNLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLV 1090
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
++D++L KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+
Sbjct: 1091 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1150
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
DSD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1151 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-Y 1209
Query: 1452 MEAVVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMAD 1507
++ + +S+++E D+ L+ G + ++G+D G+I G IQQ+ +
Sbjct: 1210 R--LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIE 1258
Query: 1508 EVINAGRF 1515
+++ G +
Sbjct: 1259 DLLRKGAY 1266
Score = 49 (22.3 bits), Expect = 3.5e-59, Sum P(5) = 3.5e-59
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 205 QMEQPQQQV-------SDQKGEPKPPSQQ--TLGGQGMAANIIRPMQAAQHQQSI 250
Q++QPQQ++ S Q +PPS Q TL A I+ P QA + S+
Sbjct: 296 QVQQPQQKIQIVPQPPSSQPQPQQPPSTQPVTLSSV-QQAQIMGPGQAPGQRLSV 349
Score = 47 (21.6 bits), Expect = 4.5e-60, Sum P(4) = 4.5e-60
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 580 PVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAP 639
P Q ++ + + A ++ PG QAP + +V +L+ Q S A G SV
Sbjct: 321 PSTQPVTLSSVQQAQIMGPG----QAPGQRLSVPLKV---VLQPQAGSSQGASSGLSVVK 373
Query: 640 QVSACDAVQVKKPAQA 655
+SA + + PA +
Sbjct: 374 VLSATEVAALSSPASS 389
Score = 43 (20.2 bits), Expect = 4.5e-60, Sum P(4) = 4.5e-60
Identities = 24/127 (18%), Positives = 51/127 (40%)
Query: 1776 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 1834
++M + Q+G+ + Q R S + +RP VE+P E + P
Sbjct: 1917 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKPPEETAAQVP----S 1972
Query: 1835 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 1894
L +++++ A+ R + +R S+ + R++P K+ + S +
Sbjct: 1973 LESLTLKLEHEVVARSRPTPQ------DYDMRVAPSDTTPLVSRSVPPVKLEDEDDSDSE 2026
Query: 1895 LKTGRLN 1901
L +L+
Sbjct: 2027 LDLSKLS 2033
Score = 40 (19.1 bits), Expect = 7.2e-59, Sum P(5) = 7.2e-59
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1764 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQ 1797
EL+ +++ S S S S T DE EDE+
Sbjct: 2026 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEK 2056
Score = 39 (18.8 bits), Expect = 4.5e-60, Sum P(4) = 4.5e-60
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 1464 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 1516
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1366 KDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1425
Query: 1517 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 1550
+R T + R + + LLH +E + + D+ S E
Sbjct: 1426 RRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAE 1466
Score = 39 (18.8 bits), Expect = 3.0e-59, Sum P(4) = 3.0e-59
Identities = 26/110 (23%), Positives = 38/110 (34%)
Query: 559 SNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVEC 618
S++ SL + G A S + +E AP +P + AP S D +
Sbjct: 41 SSLDSLDQMNQDGGGGDVANSSAND-LVPPPEETAPTELPKESTAPAPESLTLHDYTTQP 99
Query: 619 GLLRTQQQSDFPADRGKSVAPQVSACDAV-QVKKPAQATTALQPKDVGAA 667
Q S QVS + Q++ +TA QP G A
Sbjct: 100 VSQEQPAQPVLQTPTPTSGLLQVSKSQEIXQIQAQGITSTA-QPLVAGTA 148
Score = 39 (18.8 bits), Expect = 3.5e-59, Sum P(5) = 3.5e-59
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 1657
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1350 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1383
Score = 38 (18.4 bits), Expect = 3.5e-59, Sum P(5) = 3.5e-59
Identities = 26/132 (19%), Positives = 56/132 (42%)
Query: 546 LESNGKDAQAVSS--SNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQ 603
L+ +Q SS S V+ L E A A+ +P G + + +E + K+E+
Sbjct: 355 LQPQAGSSQGASSGLSVVKVLSATEVAALSSPASSAPHTGGKTGI-EENRRLEHQKKQEK 413
Query: 604 QAPV-------SSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQAT 656
+ + + +Q + L + S P + G+ + S+ + ++ +KP ++
Sbjct: 414 ANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSK 473
Query: 657 TALQPKDVGAAR 668
T+ K G ++
Sbjct: 474 TSGTSKTKGKSK 485
Score = 38 (18.4 bits), Expect = 1.2e-58, Sum P(5) = 1.2e-58
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1830 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859
LH RGD ++ F D PA+ E++ H
Sbjct: 1446 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1476
Score = 37 (18.1 bits), Expect = 1.5e-58, Sum P(5) = 1.5e-58
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 1589
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 2252 EVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 2297
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 698 (250.8 bits), Expect = 9.5e-60, Sum P(5) = 9.5e-60
Identities = 195/545 (35%), Positives = 291/545 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q +A + + G +GP L+I P +
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLS 869
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E
Sbjct: 870 TITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFE 928
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 929 MILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 988
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 989 SLLHFLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMML 1030
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 1031 RRLKEDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM 1081
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N F + + +DF +V+S GKL ++D
Sbjct: 1082 --PNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLID 1139
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ D
Sbjct: 1140 KLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPD 1199
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1200 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR-- 1256
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1510
++ + +S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++
Sbjct: 1257 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLL 1307
Query: 1511 NAGRF 1515
G +
Sbjct: 1308 RKGAY 1312
Score = 45 (20.9 bits), Expect = 9.5e-60, Sum P(5) = 9.5e-60
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 1737 SPVSPQKFGSLSALEARPGSLSKRMP------DELEEGEIAVS--GDSHMDHQQSGSWTH 1788
S ++PQ + + + LS+ +P D+ + E+ +S S S S +
Sbjct: 2034 SRLTPQDY-EIRVASSDTAPLSRSVPPVKLEDDDDSDSELDLSKLSPSSSSSSSSSSSSS 2092
Query: 1789 DRDEGEDEQVLQPKIKRKRSIRVRPR 1814
DE EDE+ + K+ RS RP+
Sbjct: 2093 SSDESEDEK--EEKLTADRS---RPK 2113
Score = 45 (20.9 bits), Expect = 9.5e-60, Sum P(5) = 9.5e-60
Identities = 27/132 (20%), Positives = 56/132 (42%)
Query: 546 LESNGKDAQAVSS--SNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQ 603
L+ +Q SS S V+ L E A A+ +P G + + +E + K+E+
Sbjct: 402 LQPQAGSSQGASSGLSVVKVLSASEVAALSSPASCAPHTAGKTGM-EENRRLEHQKKQEK 460
Query: 604 QAPV-------SSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQAT 656
+ + + +Q + L + S P + G+ + S+ + ++ +KP ++
Sbjct: 461 ANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSK 520
Query: 657 TALQPKDVGAAR 668
TA K G ++
Sbjct: 521 TAAASKTKGKSK 532
Score = 43 (20.2 bits), Expect = 9.5e-60, Sum P(5) = 9.5e-60
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 205 QMEQPQQQV-------SDQKGEPKPPSQQTLGGQGMA-ANIIRPMQAAQHQQSI 250
Q++QPQQ++ S Q PPS Q L + A I+ P Q + S+
Sbjct: 343 QVQQPQQKIQIVPQPPSSQPQPQPPPSAQPLTLSSVQQAQIMGPGQNPGQRLSV 396
Score = 42 (19.8 bits), Expect = 8.1e-59, Sum P(5) = 8.1e-59
Identities = 18/74 (24%), Positives = 31/74 (41%)
Query: 580 PVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAP 639
P Q ++ + + A ++ PG+ Q +K +L+ Q S A G SV
Sbjct: 368 PSAQPLTLSSVQQAQIMGPGQNPGQRLSVPLKM-------VLQPQAGSSQGASSGLSVVK 420
Query: 640 QVSACDAVQVKKPA 653
+SA + + PA
Sbjct: 421 VLSASEVAALSSPA 434
Score = 41 (19.5 bits), Expect = 9.5e-60, Sum P(5) = 9.5e-60
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 1464 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 1516
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1412 KDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1471
Query: 1517 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 1550
+R T + R + + LLH +E + + D+ S E
Sbjct: 1472 RRMTERDVETICRAILVYCLLHYRGDENIKSFIWDLISPAE 1512
Score = 40 (19.1 bits), Expect = 3.1e-59, Sum P(5) = 3.1e-59
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 294 RIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSP 331
+I + + E ++ P P P+ + V P GE P
Sbjct: 592 KITDDEEEEEVDVTGPIKPEPILPEPVPEPD--GETLP 627
Score = 39 (18.8 bits), Expect = 1.5e-59, Sum P(5) = 1.5e-59
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 1657
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1396 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1429
Score = 39 (18.8 bits), Expect = 6.3e-59, Sum P(5) = 6.3e-59
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1830 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859
LH RGD ++ F D PA+ E++ H
Sbjct: 1492 LHYRGDENIKSFIWDLISPAENGKTKELQNH 1522
Score = 37 (18.1 bits), Expect = 6.3e-59, Sum P(5) = 6.3e-59
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 1589
+V ++E N + E + + +++D +E R ++ WL+
Sbjct: 2297 EVECMEEPNHLDVDLETRIPVINKVDGTLLVGDEAPRRAELDMWLQ 2342
Score = 37 (18.1 bits), Expect = 8.1e-59, Sum P(5) = 8.1e-59
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 550 GKDAQAVSSSNVQSLPKEEA 569
G A AVS SN P + A
Sbjct: 137 GVSATAVSPSNTGGQPSQSA 156
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 689 (247.6 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 180/475 (37%), Positives = 252/475 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q + ++ + +G +GP LII P +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPLS 519
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYE 1109
+ NW+ E W ++ I Y G++ R + E+ KF+V++TT+E
Sbjct: 520 TITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFE 578
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L K+ W +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 579 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 638
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + AF + F L+TE++V +L IL+P ML
Sbjct: 639 SLLNFLEPSQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMML 680
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR +DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 681 RRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT----KGANQHN------ 730
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N D K DF ++++ GKL ++D
Sbjct: 731 -MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F D
Sbjct: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 904
Score = 48 (22.0 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1626 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 1657
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 1046 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1078
Score = 48 (22.0 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 25/97 (25%), Positives = 39/97 (40%)
Query: 545 HLESNGKD-AQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSA-VTKEPAPVVVP---- 598
H E KD A+ S KE A + ++ + S +KE P V
Sbjct: 142 HKEPKQKDGAKKARKPREASGTKE---AKEKRSCTDSAARTKSRKASKEQGPTPVEKKKK 198
Query: 599 GKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGK 635
GK + + V S++ DQ + LR+ ++S D K
Sbjct: 199 GKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQK 235
Score = 47 (21.6 bits), Expect = 1.5e-59, Sum P(4) = 1.5e-59
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE---DELRSGGTVDLEDD 1479
+ + +NEE+ +A A +G++ EV +++ IS + + DE + G ++++ +
Sbjct: 1866 EEEEEEENEEENLAMAVGMGERPEV--LHLTEPTTNISREKNQGFQDETKKG-SLEVANQ 1922
Query: 1480 LAGKDR 1485
G R
Sbjct: 1923 TPGLQR 1928
Score = 39 (18.8 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 1848 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRA 1893
A L T T + G + S + SS++ +++PS+ + + + +A
Sbjct: 2322 ATLST-THPEGPGPATSAPEPATAASSQAEKSIPSKSLLDWLRQQA 2366
Score = 38 (18.4 bits), Expect = 1.3e-58, Sum P(4) = 1.3e-58
Identities = 18/98 (18%), Positives = 36/98 (36%)
Query: 648 QVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKD 707
+ K+P +A +PK A+K P R+ S + +
Sbjct: 132 KAKEPKKAKEHKEPKQKDGAKKARKP--------REASGTKEAKEKRSCTDSAARTKSRK 183
Query: 708 LLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDL 745
E+G ++KK+ K + + ++ L++ P L
Sbjct: 184 ASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSL 221
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 697 (250.4 bits), Expect = 1.2e-59, Sum P(5) = 1.2e-59
Identities = 195/545 (35%), Positives = 290/545 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q +A + + G +GP L+I P +
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLS 869
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E
Sbjct: 870 TITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFE 928
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 929 MILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 988
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 989 SLLHFLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMML 1030
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 1031 RRLKEDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM 1081
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILD 1334
L N MELRK CNHP L+N F + + DF +V+S GKL ++D
Sbjct: 1082 --PNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLID 1139
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ D
Sbjct: 1140 KLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPD 1199
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1200 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR-- 1256
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1510
++ + +S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++
Sbjct: 1257 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLL 1307
Query: 1511 NAGRF 1515
G +
Sbjct: 1308 RKGAY 1312
Score = 47 (21.6 bits), Expect = 1.2e-59, Sum P(5) = 1.2e-59
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQ 226
Q++QPQQ++ P+PPS Q
Sbjct: 343 QVQQPQQKIQIV---PQPPSSQ 361
Score = 45 (20.9 bits), Expect = 2.7e-58, Sum P(5) = 2.7e-58
Identities = 24/134 (17%), Positives = 48/134 (35%)
Query: 202 GEKQMEQPQQQVSDQKGEPKPPSQQTLGG---QGMAA-NIIRPMQAAQHQQSIXXXXXXX 257
GEK+ + + ++ E KP +T G +G + N I P+ + +++
Sbjct: 498 GEKKRRK--KSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDV 555
Query: 258 XXXXXXXXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSK 317
E +I + + + +I + + E ++ P P P+
Sbjct: 556 EVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILP 615
Query: 318 QQVTSPTIAGENSP 331
+ V P GE P
Sbjct: 616 EPVQEPD--GETLP 627
Score = 44 (20.5 bits), Expect = 1.2e-59, Sum P(5) = 1.2e-59
Identities = 19/70 (27%), Positives = 27/70 (38%)
Query: 1739 VSPQKFGSLSALEARPGSLSKR--MPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDE 1796
VSP L + P L EL+ +++ S S S S T D E E E
Sbjct: 2045 VSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSST-DESEDEKE 2103
Query: 1797 QVLQPKIKRK 1806
+ L + + K
Sbjct: 2104 EKLTDQSRSK 2113
Score = 44 (20.5 bits), Expect = 1.2e-59, Sum P(5) = 1.2e-59
Identities = 19/76 (25%), Positives = 34/76 (44%)
Query: 580 PVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAP 639
P Q ++ + + A ++ PG Q+P + +V +L+ Q S A G SV
Sbjct: 368 PSTQPVTLSSVQQAQIMGPG----QSPGQRLSVPVKV---VLQPQAGSSQGASSGLSVVK 420
Query: 640 QVSACDAVQVKKPAQA 655
+SA + + PA +
Sbjct: 421 VLSASEVAALSSPASS 436
Score = 42 (19.8 bits), Expect = 2.0e-59, Sum P(5) = 2.0e-59
Identities = 24/127 (18%), Positives = 51/127 (40%)
Query: 1776 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 1834
++M + Q+G+ + Q R S + +RP VE+ E + T P
Sbjct: 1963 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKSPEETATQVP----S 2018
Query: 1835 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 1894
L +++++ A+ R + +R S+ + R++P K+ + S +
Sbjct: 2019 LESLTLKLEHEVVARSRPTPQ------DYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSE 2072
Query: 1895 LKTGRLN 1901
L +L+
Sbjct: 2073 LDLSKLS 2079
Score = 42 (19.8 bits), Expect = 4.3e-58, Sum P(6) = 4.3e-58
Identities = 27/132 (20%), Positives = 56/132 (42%)
Query: 546 LESNGKDAQAVSS--SNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQ 603
L+ +Q SS S V+ L E A A+ +P G + + +E + K+E+
Sbjct: 402 LQPQAGSSQGASSGLSVVKVLSASEVAALSSPASSAPHSGGKTGM-EENRRLEHQKKQEK 460
Query: 604 QAPV-------SSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQAT 656
+ + + +Q + L + S P + G+ + SA + ++ +KP ++
Sbjct: 461 ANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSK 520
Query: 657 TALQPKDVGAAR 668
T+ K G ++
Sbjct: 521 TSGASKTKGKSK 532
Score = 39 (18.8 bits), Expect = 1.2e-59, Sum P(5) = 1.2e-59
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 1464 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 1516
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1412 KDDDLVEFSDLESEDDERPRSRRHDRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1471
Query: 1517 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 1550
+R T + R + + LLH +E + + D+ S E
Sbjct: 1472 RRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAE 1512
Score = 39 (18.8 bits), Expect = 4.0e-59, Sum P(5) = 4.0e-59
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 1684 PLSNKDQSEEDGPVCEGGYD 1703
P + D+ EED GYD
Sbjct: 2536 PEEDDDEDEEDDDDLSQGYD 2555
Score = 39 (18.8 bits), Expect = 4.0e-59, Sum P(5) = 4.0e-59
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 1657
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1396 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1429
Score = 38 (18.4 bits), Expect = 5.1e-59, Sum P(5) = 5.1e-59
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1830 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859
LH RGD ++ F D PA+ E++ H
Sbjct: 1492 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1522
Score = 38 (18.4 bits), Expect = 2.7e-58, Sum P(6) = 2.7e-58
Identities = 26/117 (22%), Positives = 52/117 (44%)
Query: 1535 EERYQETVHDVPSLQEV-----NRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 1589
E+ +ET VPSL+ + + ++ARS + ++ ++R VP ++
Sbjct: 2006 EKSPEETATQVPSLESLTLKLEHEVVARSRPTPQDYEMRVSPSDTTPLVSR--SVPP-VK 2062
Query: 1590 ASTKEVNATIANLSK-KPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDE 1645
++ + + +LSK PS + S+ S + E+E ++ K K D+E
Sbjct: 2063 LEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTD-ESEDEKEEKLTDQSRSKLYDEE 2118
Score = 37 (18.1 bits), Expect = 3.4e-58, Sum P(6) = 3.4e-58
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 1589
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 2297 EVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 2342
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 433 (157.5 bits), Expect = 2.6e-59, Sum P(3) = 2.6e-59
Identities = 117/333 (35%), Positives = 181/333 (54%)
Query: 937 RLQGLSEEEVRSAAACAGE-EVMIRNRFLEMNAPRDGSS-VNKYYSLAHAVNERVMR-QP 993
++ GLSE+ + + E +V+IR MN D S+ + K ++ R QP
Sbjct: 428 KINGLSEDLIWNCKTVIQERDVVIRL----MNKCEDISNKLTKQVTMLTGNGGGWNREQP 483
Query: 994 SMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
S+L +L+ YQ VGL W+ ++ + LNGILADEMGLGKT+Q +A +AYL + +GN GP
Sbjct: 484 SLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQ-EGNKGP 542
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFI 1111
HLI+VP + + NW E++ W PS++ + Y G++++R ++ F+ +NV+VTTY
Sbjct: 543 HLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCA 602
Query: 1112 MY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX 1168
+ DRS ++ Y I DE +K+ S+ + L + RLLLTGTP+QN+
Sbjct: 603 ISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLEL 662
Query: 1169 XXXXXXXXPEVFDNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P +F + + FS K P AD+ + +++ I H QI++PF
Sbjct: 663 MSLLNFVMPHMFSSSTSEIRRMFSS---KTKP---ADEQSIYEKER--IAHA-KQIIKPF 713
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+LRR E+V LPPK + C MS Q +Y
Sbjct: 714 ILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLY 746
Score = 286 (105.7 bits), Expect = 2.6e-59, Sum P(3) = 2.6e-59
Identities = 70/174 (40%), Positives = 105/174 (60%)
Query: 1312 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
Y + + D L+ GK L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 832 YQHINSYQLDMDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 891
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 892 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 950
Query: 1431 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 1479
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 951 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEADE 1004
Score = 107 (42.7 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 36/105 (34%), Positives = 53/105 (50%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y +G
Sbjct: 699 EKERIAHA-KQIIKPFILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLY-----SGLFN- 751
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 752 -------RLKKS-INNLEKNTEMCNVMMQLRKMANHPLLHRQYYT 788
Score = 37 (18.1 bits), Expect = 2.6e-59, Sum P(3) = 2.6e-59
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 297 ANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHAN 334
A A + + PSSP+ +S ++ + GE S AN
Sbjct: 20 APEAAPQPSQARPSSPISLSAEEENAE---GEGS-RAN 53
Score = 37 (18.1 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 290 IMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPT 324
+MQ R +ANH P +S+ + PT
Sbjct: 770 MMQLRKMANHPLLHRQYYTPEKLKEMSQLMLKEPT 804
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 676 (243.0 bits), Expect = 2.7e-59, Sum P(4) = 2.7e-59
Identities = 188/535 (35%), Positives = 280/535 (52%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
+LRDYQ+ G+ W+L + N+ N ILADEMGLGKT+Q + + + G GP LII P
Sbjct: 912 SLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIYR-TGIKGPFLIIAPL 970
Query: 1060 AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTY 1108
+ + NW+ E W ++ I Y G+ R L E+ A +F ++TT+
Sbjct: 971 STIANWEREFRTWT-HLNVIVYHGSVVSRQMLQQYEMYCRDSQGRVIRGAYRFQAVITTF 1029
Query: 1109 EFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX 1168
E I+ +L+ +DW+ +IIDEA R+K++ L + ++LLTGTPLQN
Sbjct: 1030 EMILGGCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSLEHKVLLTGTPLQNTVEEL 1089
Query: 1169 XXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228
P F + F F L+TE++V +L IL+P M
Sbjct: 1090 FSLLHFLEPTRFPSENTFMQEFGD---------------LKTEEQV---QKLQAILKPMM 1131
Query: 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1288
LRR EDVE L PK ++ ++ IQ Y R E + K QA
Sbjct: 1132 LRRLKEDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLAKGA-GQA 1181
Query: 1289 KVYKTLNNRCMELRKTCNHPLL----------NYP-YFSDLSKDF----LVKSCGKLWIL 1333
V LN MELRK CNHP L ++ +S + DF +++S GKL ++
Sbjct: 1182 NVPNLLNTM-MELRKCCNHPYLIKGAEEKIMEDFKEVYSPAAVDFHLQAMIQSAGKLVLI 1240
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
D++L K++ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+
Sbjct: 1241 DKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKP 1300
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYME 1453
DSD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1301 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR- 1358
Query: 1454 AVVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKID 1504
++ + +S+++E D L+ G + ++G+D + G ++ + + +I+
Sbjct: 1359 -LITR-NSYEREMFDRASLKLGLDKAVLQSMSGRDNSLAG-GGQMQQQLSKKEIE 1410
Score = 63 (27.2 bits), Expect = 2.7e-59, Sum P(4) = 2.7e-59
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 595 VVVPGKEEQQAPVSSVKSDQEV-ECGLLRTQQQSDFPADRGKSVAPQVSACD 645
V + G QQ P+SS KSDQ++ + S F AD S+ Q CD
Sbjct: 378 VPIMGSPAQQCPISSSKSDQDLFSSSEVFPDGLSSFSADTPFSMTEQ-RTCD 428
Score = 46 (21.3 bits), Expect = 2.7e-59, Sum P(4) = 2.7e-59
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
+Q G Q QP QQ+ Q+ + K QQ Q A + Q Q +Q
Sbjct: 128 DQKGNNYHQQHQPHQQLHHQQLQHKQFQQQQQFQQHQAQHQQYSHQHLQQRQ 179
Score = 46 (21.3 bits), Expect = 2.0e-56, Sum P(5) = 2.0e-56
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 412 PGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIPXXXXXXXXXXXXQGGLATQMPQQR 471
P V P KN++GP + + L SS S+ Q Q QQ+
Sbjct: 509 PLVYNAQPPKNTNGPSSQPRVHSPTLKSSSSSSSSSSSSYMSEKRLQKQKQQQQQQQQQQ 568
Query: 472 ----LGFTKHQ-LHVLKAQILAFRRLKKGEGTLPQ 501
L K Q + + ++ +A R ++GE +P+
Sbjct: 569 MESPLSDDKQQKANRIISEAIAKAR-ERGEKNIPR 602
Score = 45 (20.9 bits), Expect = 2.5e-56, Sum P(5) = 2.5e-56
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 561 VQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEV 616
VQS ++ D S A+T +P P+V + A VS S +
Sbjct: 297 VQSPSATSSFQTDSVTHASSYSTACYALTSQPPPIVNATQSYSSALVSRTTSSTTI 352
Score = 42 (19.8 bits), Expect = 2.2e-55, Sum P(5) = 2.2e-55
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 201 RGEKQMEQPQQQVSDQKGEPKPPSQQ 226
R +KQ +Q QQQ Q P +Q
Sbjct: 553 RLQKQKQQQQQQQQQQMESPLSDDKQ 578
Score = 40 (19.1 bits), Expect = 1.5e-57, Sum P(5) = 1.5e-57
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 106 QHAISQESQNRSQGVEHQ 123
QH ++ + Q R Q + HQ
Sbjct: 184 QHPVTNQLQLRHQQIAHQ 201
Score = 39 (18.8 bits), Expect = 3.5e-58, Sum P(5) = 3.5e-58
Identities = 31/121 (25%), Positives = 45/121 (37%)
Query: 1751 EARPGSLSKRMPDELEEGEIAVSGDS----HMDHQQSGSWTHDRDEGEDEQVLQPKIKRK 1806
+ RP S +K EL EGE SGD H + S+ ++ +L R
Sbjct: 1510 QTRPFSSTKDELAELSEGES--SGDDKPKLRRPHDRLNSYGRTECFRVEKNLLVYGWGRW 1567
Query: 1807 RSIRVR---PRHTVERPEERSC----TDTPLH-RGDSSLLPFQMDNKYPAQLRTDTEMKA 1858
+ I R ER E C + +H RGD + F D P + E++
Sbjct: 1568 KDILAHGRFKRQLSERDVEWICRALLSYCLVHYRGDDKIKSFMWDLIAPTEDGRTKELQN 1627
Query: 1859 H 1859
H
Sbjct: 1628 H 1628
Score = 38 (18.4 bits), Expect = 2.7e-59, Sum P(4) = 2.7e-59
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 1532 LHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1563
L DEE +++ D+P +N + + E
Sbjct: 2792 LGDEEEKKKSAGDIPKSSALNLSLDGKAERTE 2823
Score = 38 (18.4 bits), Expect = 3.5e-58, Sum P(5) = 3.5e-58
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 1918 WDGKIANASGSSNFS 1932
W G +A SG S S
Sbjct: 2510 WSGGVAGMSGPSGLS 2524
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 694 (249.4 bits), Expect = 2.9e-59, Sum P(6) = 2.9e-59
Identities = 189/529 (35%), Positives = 281/529 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I P +
Sbjct: 958 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 1016
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G++ R + E+ + KF+ ++TT+E
Sbjct: 1017 TIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFE 1075
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1076 MILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELF 1135
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1136 SLLHFLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1177
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K QA
Sbjct: 1178 RRLKEDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQAN 1227
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L+N F + S DF ++++ GKL ++D
Sbjct: 1228 VPNLLNTM-MELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLID 1286
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ D
Sbjct: 1287 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1346
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 1347 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR-- 1403
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1404 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1451
Score = 55 (24.4 bits), Expect = 2.9e-59, Sum P(6) = 2.9e-59
Identities = 44/206 (21%), Positives = 75/206 (36%)
Query: 531 QDRVSGKIAEDQLRH--LESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAV 588
+D G + +LR L+ + ++ + V+ PKE + K +P +
Sbjct: 610 KDDFPGGVENQELRRNSLDVSQEEKKKKKRPKVKKDPKESKEPKEKKEPKTPKAPKIPKE 669
Query: 589 TKEPAPVVVPGKEEQQAPVSSVKSDQE-------VECGLLRTQQQSDFPADRGKSVAPQV 641
KE V K + S+ K D E V G + SD S AP+
Sbjct: 670 PKEKKAKTVTPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPAPEE 729
Query: 642 SACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTL 701
VQ ++ ++ Q K RK + +F + D + + SN T
Sbjct: 730 DEDPGVQKRRSSR-----QVK-----RKRYTEDLEFKISDEEADDADAAGRDSPSN--TS 777
Query: 702 AYDVKDLLSEEGLEVLQKKRSENLKK 727
+ ++ + EG V++K S L K
Sbjct: 778 QSEQQESVDAEG-PVVEKIMSSRLVK 802
Score = 46 (21.3 bits), Expect = 2.9e-59, Sum P(6) = 2.9e-59
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 1868 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 1909
D+SE SS+ SR +S ASL T R G + ED
Sbjct: 2238 DKSEESSQPEAGAVSRGKTFDEESNASLSTARDETRDGFYMED 2280
Score = 44 (20.5 bits), Expect = 2.9e-59, Sum P(6) = 2.9e-59
Identities = 14/48 (29%), Positives = 18/48 (37%)
Query: 201 RGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
R Q +QPQ S + P Q +G +A Q Q QQ
Sbjct: 156 RAPYQQQQPQPAPSGPPAQGHPQHMQQMGSY-LARGDFSMQQHGQPQQ 202
Score = 42 (19.8 bits), Expect = 2.9e-59, Sum P(6) = 2.9e-59
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1543 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1572
Score = 38 (18.4 bits), Expect = 2.9e-59, Sum P(6) = 2.9e-59
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 402 HPPQTSLNMTPGVDQPL 418
H PQ S +M P + P+
Sbjct: 231 HMPQQSPSMAPSLRHPV 247
Score = 38 (18.4 bits), Expect = 1.2e-58, Sum P(6) = 1.2e-58
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQ 225
Q+ P QQ Q PP+Q
Sbjct: 154 QIRAPYQQQQPQPAPSGPPAQ 174
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 683 (245.5 bits), Expect = 2.9e-59, Sum P(5) = 2.9e-59
Identities = 195/563 (34%), Positives = 286/563 (50%)
Query: 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF 1046
+++ + P +LR YQ+ GL W+ + N N ILADEMGLGKT+Q + + + E+
Sbjct: 2015 KKLEKTPVYKGGNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVYEY 2074
Query: 1047 KGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV---------- 1096
G GP L+I P + + NW+ E W ++ + Y G+ + + E
Sbjct: 2075 -GIRGPFLVIAPLSTIPNWQREFEGWT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVL 2132
Query: 1097 -AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1155
+KFNVL+TT+E I+ D L +W+ +IDEA R+K+R L L + + R+L
Sbjct: 2133 KEPIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVL 2192
Query: 1156 LTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 1215
L+GTPLQN+ P F +++ F F L TE++V
Sbjct: 2193 LSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEFGS---------------LRTEEEV- 2236
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
++L +L+P MLRR +DVE SL PK ++ ++ IQ Y G L +
Sbjct: 2237 --NKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYY-----RGIL-----E 2284
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLN-------YPYFSDLSKD------ 1321
+ K A + L N MELRK C HP LLN Y + S +D
Sbjct: 2285 QNFSFLKKGTTSANI-PNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDPESYYK 2343
Query: 1322 FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
L+ S GK+ ++D++L KL+ GHRVL+FS M + LDILE+YL +R+ + RIDG
Sbjct: 2344 NLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGN 2403
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
R+ AI ++ SD F+FLL +A G G+NL +ADTVIIYD D NP+N+ QA AR HRI
Sbjct: 2404 LRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRI 2463
Query: 1442 GQKREVKVI-------YMEAVVDKISSHQKEDE--LRSGGTVDLEDDLAGKDRYIGS--I 1490
GQ++ VK+ Y + DK S D+ L+S T +D G ++ + I
Sbjct: 2464 GQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQGSKD---GNNKQLSKKEI 2520
Query: 1491 EGLIRNNIQQYKIDMADEVINAG 1513
E L++ Y M D+ NAG
Sbjct: 2521 EDLLKKGA--YGAVMDDD--NAG 2539
Score = 74 (31.1 bits), Expect = 2.9e-59, Sum P(5) = 2.9e-59
Identities = 41/190 (21%), Positives = 72/190 (37%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGG---QGMA--ANIIRPMQAAQHQQSIXXXXXXXXX 259
Q Q QQQ S Q+ +P+ P Q TL Q M + I + Q+ HQQ +
Sbjct: 701 QPTQQQQQTSQQQQQPQQP-QATLTSPHHQQMQHQSPIHQQQQSPHHQQHLPSYNQSQQQ 759
Query: 260 XXXXXXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQ 319
+ Q + + ++ +P + H+ + PS VP S+QQ
Sbjct: 760 FDPFANILGDNQPAASQQTMSPAHVSSPVPAQMQQ--QQHQTQQQ----PSQQVPQSQQQ 813
Query: 320 -VTSP---TIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXISLQ 375
V+ P T + S ++ + T++ + S S++ ++ Q
Sbjct: 814 QVSQPQQQTQQQQPSTPSHHLSSILNETANSNDSSTLAVAANDSNNSSSNSSTNSIVNNQ 873
Query: 376 QFSVHGRDNQ 385
SVH ++Q
Sbjct: 874 PTSVHDSNSQ 883
Score = 57 (25.1 bits), Expect = 5.7e-57, Sum P(6) = 5.7e-57
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPP--SQQTLGGQGMAANIIR--PMQAAQHQQ 248
+Q G ++Q Q QQQ Q+ +P QQ L G G+ + P + HQQ
Sbjct: 305 QQLGAHQQQQLQSQQQQQAQQQQPHVSLMQQQQLPGAGLPPPHMGMPPSYGSHHQQ 360
Score = 55 (24.4 bits), Expect = 6.8e-58, Sum P(6) = 6.8e-58
Identities = 26/103 (25%), Positives = 33/103 (32%)
Query: 375 QQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLP---VKNSSGPENSQM 431
QQ H + Q+ S+Q P H PG P P + S G + Q
Sbjct: 305 QQLGAH-QQQQLQSQQQQQAQQQQP--HVSLMQQQQLPGAGLPPPHMGMPPSYGSHHQQQ 361
Query: 432 QYLRQLNRSSPQSAIPXXXXXXXXXXXXQGGLATQMPQQRLGF 474
Q +Q + QSA P Q PQ R F
Sbjct: 362 QQQQQTQQQQQQSAPPYMSSSKHQQAAAQ---LNSSPQYRAPF 401
Score = 53 (23.7 bits), Expect = 6.8e-58, Sum P(6) = 6.8e-58
Identities = 37/151 (24%), Positives = 62/151 (41%)
Query: 554 QAVSSSNVQSLPKEEAYA---GDDKAAVSPVGQGMS-AVTKEPAPVVVPGKEEQ--QAPV 607
Q + S N QS + + +A GD++ A S Q MS A P P + ++ Q Q P
Sbjct: 748 QHLPSYN-QSQQQFDPFANILGDNQPAASQ--QTMSPAHVSSPVPAQMQQQQHQTQQQPS 804
Query: 608 SSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAA 667
V Q+ + + Q Q P+ ++ ++ A A A + +
Sbjct: 805 QQVPQSQQQQVSQPQQQTQQQQPSTPSHHLSSILNET-ANSNDSSTLAVAANDSNNSSSN 863
Query: 668 RKYHGPLFDFPFFTRKHDSVGSTAMVNSSNN 698
+ + + P T HDS S + +NSS+N
Sbjct: 864 SSTNSIVNNQP--TSVHDS-NSQSSINSSSN 891
Score = 52 (23.4 bits), Expect = 5.4e-57, Sum P(5) = 5.4e-57
Identities = 20/102 (19%), Positives = 33/102 (32%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGMA-ANIIRPMQAAQHQQSIXXXXXXXXXXXXX 263
QM+Q Q Q Q + P SQQ Q +P + H SI
Sbjct: 791 QMQQQQHQTQQQPSQQVPQSQQQQVSQPQQQTQQQQPSTPSHHLSSILNETANSNDSSTL 850
Query: 264 XXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESN 305
N + N+ + Q + S ++ ++ +N
Sbjct: 851 AVAANDSNNSSSNSSTNSIVNNQPTSVHDSNSQSSINSSSNN 892
Score = 51 (23.0 bits), Expect = 1.7e-57, Sum P(6) = 1.7e-57
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 375 QQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYL 434
QQ + ++P P A G P++P + + G P P + P S MQ+
Sbjct: 204 QQQQQSQQQARLPQHYPQAPGQH--PLYPGVGAPTVQAG-QPPTPQAYAHSPYGSPMQH- 259
Query: 435 RQLNRSSPQ 443
Q +R +PQ
Sbjct: 260 -QPSRGAPQ 267
Score = 50 (22.7 bits), Expect = 2.9e-56, Sum P(6) = 2.9e-56
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQ 226
++Q +Q QQQV Q + PP QQ
Sbjct: 557 QQQAQQQQQQVQQQ--QQAPPQQQ 578
Score = 49 (22.3 bits), Expect = 1.1e-56, Sum P(5) = 1.1e-56
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPS 224
++Q+ QPQQQ Q +P PS
Sbjct: 812 QQQVSQPQQQTQQQ--QPSTPS 831
Score = 49 (22.3 bits), Expect = 3.7e-56, Sum P(6) = 3.7e-56
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANI 237
Q +Q QQQ Q+ + PP + Q AA +
Sbjct: 359 QQQQQQQQTQQQQQQSAPPYMSSSKHQQAAAQL 391
Score = 47 (21.6 bits), Expect = 6.8e-58, Sum P(6) = 6.8e-58
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 279 ANASLIAQLIPI---MQSRIVANHKANESNMGAPSSPVPVSKQQVTSPT 324
+NAS Q +P + +A++ A +S M S P +QQ PT
Sbjct: 136 SNASAYRQHMPAYGQQDQQKLASYGAQQSMMAGYGSLAPQQQQQQQPPT 184
Score = 47 (21.6 bits), Expect = 6.0e-56, Sum P(6) = 6.0e-56
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 203 EKQMEQPQQQVSDQK---------GEPKP-PSQQTLGGQGMAANIIRPMQA 243
+ Q +QPQQ VS+Q G P P P T G G A P+ A
Sbjct: 442 QTQAQQPQQVVSNQPSQHSIQGMVGLPSPRPQPPTSGAGGAGAKGPAPVAA 492
Score = 46 (21.3 bits), Expect = 2.9e-59, Sum P(5) = 2.9e-59
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 1567 QMDEEFGWIEEMTRYDQVPKWL 1588
Q+ W+ E Y+ PKWL
Sbjct: 4592 QLKRLMQWLTENPNYEVDPKWL 4613
Score = 45 (20.9 bits), Expect = 1.1e-57, Sum P(6) = 1.1e-57
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQ 226
++Q +Q QQQ Q+ + + SQQ
Sbjct: 188 QQQAQQVQQQAQQQQQQQQQQSQQ 211
Score = 45 (20.9 bits), Expect = 5.7e-57, Sum P(6) = 5.7e-57
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 372 ISLQQFSVHGRDNQVPS-----RQPVAIGNGLPPIHPPQTSLNMTPG-VDQPLPVKNSSG 425
I QQ S H + + +PS +Q N L P + M+P V P+P +
Sbjct: 737 IHQQQQSPHHQQH-LPSYNQSQQQFDPFANILGDNQPAASQQTMSPAHVSSPVPAQMQQQ 795
Query: 426 PENSQMQYLRQLNRSSPQ 443
+Q Q +Q+ +S Q
Sbjct: 796 QHQTQQQPSQQVPQSQQQ 813
Score = 44 (20.5 bits), Expect = 2.9e-59, Sum P(5) = 2.9e-59
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 586 SAVTK-EPAPVVVPGKEEQQAPVSSVKSDQ--------EVECGLLRTQQQSDFPADRGKS 636
S TK E + + V KEE + P S KSD+ EV+ + ++ ++S P ++ ++
Sbjct: 1708 SEETKLESSAMEVDSKEESE-PDDSKKSDEDNKDKDKMEVDDEVGKSDKESK-PEEQSET 1765
Query: 637 VAPQVSACDAVQVKKPAQATTALQPKD 663
V + ++ A++ K + TA K+
Sbjct: 1766 VKTEENS-KAIEEDKSSTVLTADHAKE 1791
Score = 44 (20.5 bits), Expect = 1.2e-55, Sum P(6) = 1.2e-55
Identities = 25/125 (20%), Positives = 44/125 (35%)
Query: 204 KQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIXXXXXXXXXXXXX 263
+QM P Q + + P + ++ G M A+ Q QHQQ
Sbjct: 501 EQMVMPSQALGLPPMD-YPSAYRSAVGPRMPAS--PQQQQQQHQQWGAAHGAQHLAALQQ 557
Query: 264 XXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSP 323
++ + Q A Q ++Q++ +H+ S G P P + QQ P
Sbjct: 558 QQAQQQQQQVQQQQQAPPQQ-QQQAAMLQAQ-QQHHQQQLSMYGQPMGQQPQTAQQQVVP 615
Query: 324 TIAGE 328
+ +
Sbjct: 616 PVTSQ 620
Score = 43 (20.2 bits), Expect = 3.7e-59, Sum P(5) = 3.7e-59
Identities = 17/75 (22%), Positives = 29/75 (38%)
Query: 534 VSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAG-DDKAAVSPVGQGMSAVTKEP 592
V K +DQ ++ G D ++ SN + E+ + + V +G +V KE
Sbjct: 1801 VDEKANDDQSAVSKAEGSDEKSTDDSNPEEATTEKNKESLEIEGEKERVKEGEESVKKEN 1860
Query: 593 APVVVPGKEEQQAPV 607
E + PV
Sbjct: 1861 DEKTEADMENKPEPV 1875
Score = 43 (20.2 bits), Expect = 6.1e-56, Sum P(7) = 6.1e-56
Identities = 29/114 (25%), Positives = 42/114 (36%)
Query: 542 QLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMS-AVTKEPAPVVVPGK 600
Q + ++ + Q V S N S + G P G A K PAPV P
Sbjct: 437 QQQQQQTQAQQPQQVVS-NQPSQHSIQGMVGLPSPRPQPPTSGAGGAGAKGPAPVAAP-V 494
Query: 601 EEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQ 654
QA V Q + GL D+P+ +V P++ A Q ++ Q
Sbjct: 495 NTLQALEQMVMPSQAL--GL----PPMDYPSAYRSAVGPRMPASPQQQQQQHQQ 542
Score = 42 (19.8 bits), Expect = 2.9e-59, Sum P(5) = 2.9e-59
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 1872 PSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSS 1929
PS+ S + + K+ A+ +L +PG + D F + A+G S
Sbjct: 5099 PSTSGSNTGTSTSSSKSSKAAATAAAAQLPQIPGMSSDFPQAFLAEMAAQAMAAAGGS 5156
Score = 42 (19.8 bits), Expect = 2.2e-57, Sum P(6) = 2.2e-57
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTL 228
++Q +Q QQQ + P+ P Q L
Sbjct: 203 QQQQQQSQQQARLPQHYPQAPGQHPL 228
Score = 42 (19.8 bits), Expect = 1.9e-55, Sum P(6) = 1.9e-55
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRP--MQAAQHQQ 248
+ Q + QQQ+S G+P QT Q + +P + A+Q QQ
Sbjct: 585 QAQQQHHQQQLS-MYGQPMGQQPQTAQQQVVPPVTSQPPVVAASQQQQ 631
Score = 40 (19.1 bits), Expect = 7.5e-59, Sum P(5) = 7.5e-59
Identities = 17/93 (18%), Positives = 36/93 (38%)
Query: 548 SNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPV 607
+ G AQ V +LP +E+ + ++ S V + ++ + A + K
Sbjct: 1580 AEGDAAQEVGEEK-SNLPLDESSQLEASSSTSAVAEKERQISTDAANAAMSSKPNYVYIN 1638
Query: 608 SSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQ 640
+ + V+ L + + D+ K AP+
Sbjct: 1639 TGDEDSMVVQLVLAMRMGKRELILDKPKEKAPE 1671
Score = 40 (19.1 bits), Expect = 1.1e-57, Sum P(6) = 1.1e-57
Identities = 29/130 (22%), Positives = 49/130 (37%)
Query: 1792 EGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLR 1851
E DE ++QP +K+ + H + DT + ++L + A
Sbjct: 5395 EEADELIIQPILKKPTAANPGSSHGGSVDD----LDTAENTSAANLSGSSSSSAAAAAAA 5450
Query: 1852 TDTEMKAHGESNSLRHDQS--EPSSKSRRNLPS---RKIANAPKSRASLKTGRLNCMPGH 1906
E + SN L+ +S E S S P R++ + +R+S LN G
Sbjct: 5451 AAEENRR--SSNRLKRPRSGNEQGSGSVEGQPPEKRRELRSTRHTRSSADASTLNLSTG- 5507
Query: 1907 TEDAADHFKE 1916
+E A+ E
Sbjct: 5508 SESGAEERNE 5517
Score = 40 (19.1 bits), Expect = 3.5e-57, Sum P(6) = 3.5e-57
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 218 GEPK--PPSQQTLGGQGMAANIIRPMQAAQHQQSI 250
G P+ PPSQQ A P Q QQ +
Sbjct: 122 GHPQAAPPSQQQRQSNASAYRQHMPAYGQQDQQKL 156
Score = 40 (19.1 bits), Expect = 3.1e-55, Sum P(6) = 3.1e-55
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQH 246
QM VS K P PP QQ Q + Q +QH
Sbjct: 420 QMSPRPVGVSPAK--PPPPQQQQQQTQAQQPQQVVSNQPSQH 459
Score = 39 (18.8 bits), Expect = 3.5e-57, Sum P(6) = 3.5e-57
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 1794 EDEQVLQPKIKRKRSIRVRP-RHTV---ERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 1849
+DE + + +K S V P + + E PE+ D + + ++ K
Sbjct: 3669 DDELMTNESVIKKES-PVTPIKEEIKSEESPEKHDTADNLEDKNSDAEESTKIKGKEDFN 3727
Query: 1850 LRTDTEMKAHGESNSLRHDQS 1870
T TE +A ES +L D+S
Sbjct: 3728 PET-TEKEALDESTNLNKDKS 3747
Score = 39 (18.8 bits), Expect = 1.4e-56, Sum P(5) = 1.4e-56
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 391 PVAIG--NGLPPIHPPQTSLNMTP 412
P A+G G PP H P L P
Sbjct: 35 PRAMGPPGGYPPRHRPPHPLQQQP 58
Score = 39 (18.8 bits), Expect = 1.8e-56, Sum P(6) = 1.8e-56
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 583 QGMSAVTKEPAPVVVPGKEEQQ 604
Q + VT +P PVV +++QQ
Sbjct: 612 QVVPPVTSQP-PVVAASQQQQQ 632
Score = 39 (18.8 bits), Expect = 2.3e-56, Sum P(6) = 2.3e-56
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 409 NMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIP 447
N Q + + S P +QMQ + + P +P
Sbjct: 770 NQPAASQQTMSPAHVSSPVPAQMQQQQHQTQQQPSQQVP 808
Score = 39 (18.8 bits), Expect = 6.1e-56, Sum P(7) = 6.1e-56
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ 813
QQ Q+ A Q+ L ++Q + +QVQ Q+A ++Q
Sbjct: 538 QQHQQWGAAHGAQH--LAALQQQQAQQQQQQVQQQQQAPPQQQ 578
Score = 39 (18.8 bits), Expect = 3.1e-55, Sum P(5) = 3.1e-55
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ 813
QQQQ+ P +Q ++ ++ ++ + + +Q Q SQ+ R Q
Sbjct: 176 QQQQQQPPTPQQQ-QQAQQVQQQAQQQQQQQQQQSQQQARLPQ 217
Score = 38 (18.4 bits), Expect = 6.7e-54, Sum P(6) = 6.7e-54
Identities = 25/103 (24%), Positives = 46/103 (44%)
Query: 529 NNQDRVSGKIAEDQLRHLESNGK-DAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSA 587
+ Q R S A Q H+ + G+ D Q ++S Q + AG +++P Q
Sbjct: 130 SQQQRQSNASAYRQ--HMPAYGQQDQQKLASYGAQ----QSMMAG--YGSLAPQQQQQQ- 180
Query: 588 VTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFP 630
+ P P +++QQA ++ Q+ + ++QQQ+ P
Sbjct: 181 --QPPTP-----QQQQQAQQVQQQAQQQQQQQQQQSQQQARLP 216
Score = 37 (18.1 bits), Expect = 2.2e-57, Sum P(6) = 2.2e-57
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1904 PGHTEDAA-DHFKESWDGKIANASGSSNFSA 1933
PG + + D + + AN SGSS+ SA
Sbjct: 5414 PGSSHGGSVDDLDTAENTSAANLSGSSSSSA 5444
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 697 (250.4 bits), Expect = 3.1e-59, Sum P(5) = 3.1e-59
Identities = 196/548 (35%), Positives = 290/548 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N+ N ILADEMGLGKT+Q +A + + G +GP L+I P +
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLS 869
Query: 1061 VLVNWKSELHKWLPSVSCIYY-------------VGAKDQRSRLFSQEVAALKFNVLVTT 1107
+ NW+ E + W + +Y+ + KD R RL A KF+ L+TT
Sbjct: 870 TITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP---GAYKFDALITT 926
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXX 1167
+E I+ D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 927 FEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEE 986
Query: 1168 XXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P F + F F L+TE++V +L IL+P
Sbjct: 987 LFSLLHFLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPM 1028
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287
MLRR EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 1029 MLRRLKEDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHT 1079
Query: 1288 AKVYKTLNNRCMELRKTCNHP-LLN-------YPYFSD----LSKDF----LVKSCGKLW 1331
L N MELRK CNHP L+N F + + DF +V+S GKL
Sbjct: 1080 NM--PNLLNTMMELRKCCNHPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLV 1137
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
++D++L KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+
Sbjct: 1138 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1197
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
DSD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1198 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-Y 1256
Query: 1452 MEAVVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMAD 1507
++ + +S+++E D+ L+ G + ++G+D G+I G IQQ+ +
Sbjct: 1257 R--LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIE 1305
Query: 1508 EVINAGRF 1515
+++ G +
Sbjct: 1306 DLLRKGAY 1313
Score = 48 (22.0 bits), Expect = 3.1e-59, Sum P(5) = 3.1e-59
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 205 QMEQPQQ--QVSDQKGEPKPPSQQTLGGQGMAANIIRPMQ 242
Q++QPQQ Q+ Q +P QQ Q +A + ++ Q
Sbjct: 343 QVQQPQQKIQIVPQPPSSQPQPQQPPSTQPVALSSVQQAQ 382
Score = 48 (22.0 bits), Expect = 4.9e-59, Sum P(5) = 4.9e-59
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 580 PVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAP 639
P Q ++ + + A ++ PG Q P + +V +L+ Q S A G SV
Sbjct: 368 PSTQPVALSSVQQAQIMGPG----QGPGQRLSVPLKV---VLQPQAGSSQGASSGLSVVK 420
Query: 640 QVSACDAVQVKKPAQAT 656
+SA + + PA +T
Sbjct: 421 VLSASEVAALSSPASST 437
Score = 44 (20.5 bits), Expect = 3.1e-59, Sum P(5) = 3.1e-59
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 1764 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 1808
EL+ +++ S S S S T DE EDE+ + R RS
Sbjct: 2073 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEKEEKLTADRSRS 2114
Score = 43 (20.2 bits), Expect = 3.9e-59, Sum P(5) = 3.9e-59
Identities = 24/127 (18%), Positives = 51/127 (40%)
Query: 1776 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 1834
++M + Q+G+ + Q R S + +RP VE+P E + P
Sbjct: 1964 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKPPEETAAQVP----S 2019
Query: 1835 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 1894
L +++++ A+ R + +R S+ + R++P K+ + S +
Sbjct: 2020 LESLTLKLEHEVVARSRPTPQ------DYEMRVAPSDTTPLVSRSVPPVKLEDEDDSDSE 2073
Query: 1895 LKTGRLN 1901
L +L+
Sbjct: 2074 LDLSKLS 2080
Score = 39 (18.8 bits), Expect = 3.1e-59, Sum P(5) = 3.1e-59
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 1657
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1397 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1430
Score = 39 (18.8 bits), Expect = 3.1e-59, Sum P(5) = 3.1e-59
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 1464 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 1516
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1413 KDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1472
Query: 1517 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 1550
+R T + R + + LLH +E + + D+ S E
Sbjct: 1473 RRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAE 1513
Score = 39 (18.8 bits), Expect = 3.1e-59, Sum P(5) = 3.1e-59
Identities = 26/132 (19%), Positives = 56/132 (42%)
Query: 546 LESNGKDAQAVSS--SNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQ 603
L+ +Q SS S V+ L E A A+ +P G + + +E + K+E+
Sbjct: 402 LQPQAGSSQGASSGLSVVKVLSASEVAALSSPASSTPHTGGKTGI-EENRRLEHQKKQEK 460
Query: 604 QAPV-------SSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQAT 656
+ + + +Q + L + S P + G+ + S+ + ++ +KP ++
Sbjct: 461 ANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSK 520
Query: 657 TALQPKDVGAAR 668
T+ K G ++
Sbjct: 521 TSGTSKTKGKSK 532
Score = 38 (18.4 bits), Expect = 1.3e-58, Sum P(5) = 1.3e-58
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1830 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859
LH RGD ++ F D PA+ E++ H
Sbjct: 1493 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1523
Score = 37 (18.1 bits), Expect = 4.2e-59, Sum P(4) = 4.2e-59
Identities = 30/124 (24%), Positives = 47/124 (37%)
Query: 385 QVPSRQPVAIGNGLPPIHPPQT-SLNMTPGVDQPLPVKNSSGPENSQMQYLRQ-LNRSSP 442
Q PS QPVA+ + + Q PG +P+K P+ Q L+
Sbjct: 366 QPPSTQPVALSS----VQQAQIMGPGQGPGQRLSVPLKVVLQPQAGSSQGASSGLSVVKV 421
Query: 443 QSAIPXXXXXXXXXXXXQGGLATQMPQ-QRLGFTKHQ--LHVLKAQILAFRRLKKGEGTL 499
SA G T + + +RL K Q + + A+ +A R +GE +
Sbjct: 422 LSASEVAALSSPASSTPHTGGKTGIEENRRLEHQKKQEKANRIVAEAIA-RARARGEQNI 480
Query: 500 PQEL 503
P+ L
Sbjct: 481 PRVL 484
Score = 37 (18.1 bits), Expect = 4.9e-59, Sum P(5) = 4.9e-59
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 550 GKDAQAVSSSNVQSLPKEEA 569
G A AVSSS+ P + A
Sbjct: 137 GVSATAVSSSSAGGQPSQSA 156
Score = 37 (18.1 bits), Expect = 1.6e-58, Sum P(5) = 1.6e-58
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 1544 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 1589
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 2299 EVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 2344
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 678 (243.7 bits), Expect = 3.6e-59, Sum P(6) = 3.6e-59
Identities = 189/531 (35%), Positives = 280/531 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I P +
Sbjct: 961 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 1019
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G++ R + E+ + KF+ ++TT+E
Sbjct: 1020 TIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFE 1078
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1079 MILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELF 1138
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1139 SLLHFLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1180
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K QA
Sbjct: 1181 RRLKEDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQAN 1230
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L+N F + S DF ++++ GKL ++D
Sbjct: 1231 VPNLLNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 1289
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ D
Sbjct: 1290 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1349
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK--NEEQAVARAHRIGQKREVKVIYM 1452
SD F+FLL RA G G+NL +ADT II+D D NPK + QA AR HRIGQ + VK IY
Sbjct: 1350 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQSKSVK-IYR 1408
Query: 1453 EAVVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1409 --LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIE 1456
Score = 51 (23.0 bits), Expect = 3.6e-59, Sum P(6) = 3.6e-59
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 1600 ANLSKKPSKNILFGSNIGVDSGEIETERKRG 1630
A LS+ PS+++L GS VDS E +R+RG
Sbjct: 2481 AGLSRTPSRHLLNGSL--VDS-EPPVKRRRG 2508
Score = 51 (23.0 bits), Expect = 3.6e-59, Sum P(6) = 3.6e-59
Identities = 39/203 (19%), Positives = 73/203 (35%)
Query: 530 NQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVT 589
N++ + G E + + KD + + PKE K P + T
Sbjct: 623 NRNSLDGSQEEKKKKKRPKAKKDPKEPKDPKEKKEPKEPKTPKAPKIPKEPKEKKAKTAT 682
Query: 590 KEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQV 649
+P ++ + S++K ++V G + SD S P+ VQ
Sbjct: 683 PKPKSSKKSSNKKPDSEASALK--KKVNKGKTEGSENSDLDKTPPPSPPPEDDEDPGVQK 740
Query: 650 KKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLL 709
++ ++ Q K RK + +F + D + + SN T + ++ +
Sbjct: 741 RRSSR-----QVK-----RKRYTEDLEFKISDEEPDDADAAGRDSPSN--TSQSEQQESV 788
Query: 710 SEEG--LEVLQKKRSENLKKISG 730
EG +E + RS +K SG
Sbjct: 789 DAEGPVVEKIMSSRSVKKQKESG 811
Score = 48 (22.0 bits), Expect = 3.6e-59, Sum P(6) = 3.6e-59
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 208 QPQQQVSDQKGEPKPPSQQTLGG 230
QPQ S G+ PP Q +GG
Sbjct: 168 QPQPAPSGPPGQGHPPHLQQMGG 190
Score = 47 (21.6 bits), Expect = 5.7e-59, Sum P(5) = 5.7e-59
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 1616 IGVDSGEIETE--RKRGPKGKKYPNYKEVDDEI--GEYSEASSDERNG 1659
+G+D +++ R+ P G + + KE++D + G Y +E G
Sbjct: 1427 LGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1474
Score = 46 (21.3 bits), Expect = 3.6e-59, Sum P(6) = 3.6e-59
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 1744 FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSH-MDHQQSGSWTHDRDEGEDE 1796
F +L+ L+ GS ++ PD+ E G ++ D ++S T + EDE
Sbjct: 2915 FPALAGLQNAVGSGEEKAPDKAEGGAFQEEENAEGSDAEESLDKTAESSVLEDE 2968
Score = 45 (20.9 bits), Expect = 3.6e-59, Sum P(6) = 3.6e-59
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 1550 EVNRMIARSEDEVELFDQMDEEFGW----IEEMTRYDQVPKWLRA-STKEV 1595
++ R+I R+ E E+FD+ + G ++ M+ + P ++ S KE+
Sbjct: 1405 KIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEI 1455
Score = 42 (19.8 bits), Expect = 3.0e-58, Sum P(6) = 3.0e-58
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1555 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1584
Score = 42 (19.8 bits), Expect = 7.8e-58, Sum P(6) = 7.8e-58
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 1868 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 1909
D+SE SS+ SR +S AS+ T R G + ED
Sbjct: 2243 DKSEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMED 2285
Score = 40 (19.1 bits), Expect = 2.4e-58, Sum P(6) = 2.4e-58
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 206 MEQPQQQVSDQKGE----PK-----PPSQQTL--GGQGMAANIIRPMQAAQHQQS 249
M+QP + +S+ G P PP Q GG G + MQ +H QS
Sbjct: 83 MDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGGSGGQMGVYPGMQNERHGQS 137
Score = 39 (18.8 bits), Expect = 1.5e-58, Sum P(6) = 1.5e-58
Identities = 21/87 (24%), Positives = 35/87 (40%)
Query: 1458 KISSHQKEDELRSGGTVDLEDDLAGK---------DRYIGSIEG---LIRNNIQQYKIDM 1505
++ S KEDEL DLE D K DR G + N+ Y
Sbjct: 1565 RLYSAVKEDELMEFS--DLESDSEEKPCAKPRRPQDRSQGYARSECFRVEKNLLVYGWGR 1622
Query: 1506 ADEVINAGRFDQRTTHEERRMTLETLL 1532
++++ GR+ ++ T ++ T+L
Sbjct: 1623 WTDILSHGRYKRQLTEQDVETICRTIL 1649
Score = 39 (18.8 bits), Expect = 1.6e-57, Sum P(6) = 1.6e-57
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 1771 AVSGDSHMDHQQSGSWTHDRDEGED 1795
AVS + D + + S + RDE D
Sbjct: 2255 AVSRGKNFDEESNASMSTARDETRD 2279
Score = 38 (18.4 bits), Expect = 7.8e-58, Sum P(6) = 7.8e-58
Identities = 22/125 (17%), Positives = 47/125 (37%)
Query: 540 EDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVP- 598
E Q + + K+ V+ +S K++ G D ++ + +E P
Sbjct: 584 EQQPQQKKKKKKNNHIVAEDPSKSFGKDDVPGGVDTQELNR--NSLDGSQEEKKKKKRPK 641
Query: 599 GKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADR-GKSVAPQVSACDAVQVKKPAQATT 657
K++ + P + + E + + P ++ K+ P+ + KKP +
Sbjct: 642 AKKDPKEPKDPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEAS 701
Query: 658 ALQPK 662
AL+ K
Sbjct: 702 ALKKK 706
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 694 (249.4 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 189/529 (35%), Positives = 281/529 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I P +
Sbjct: 968 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 1026
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G++ R + E+ + KF+ ++TT+E
Sbjct: 1027 TIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFE 1085
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1086 MILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELF 1145
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1146 SLLHFLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1187
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K QA
Sbjct: 1188 RRLKEDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQAN 1237
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L+N F + S DF ++++ GKL ++D
Sbjct: 1238 VPNLLNTM-MELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLID 1296
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ D
Sbjct: 1297 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1356
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 1357 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR-- 1413
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1414 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1461
Score = 53 (23.7 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 39/203 (19%), Positives = 73/203 (35%)
Query: 530 NQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVT 589
N++ + G E + + KD + + PKE K P + T
Sbjct: 630 NRNSLDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTAT 689
Query: 590 KEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQV 649
+P ++ + S++K ++V G + SD S P+ VQ
Sbjct: 690 PKPKSSKKSSNKKPDSEASALK--KKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQK 747
Query: 650 KKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLL 709
++ ++ Q K RK + +F + D + + SN T + ++ +
Sbjct: 748 RRSSR-----QVK-----RKRYTEDLEFKISDEEADDADAAGRDSPSN--TSQSEQQESV 795
Query: 710 SEEG--LEVLQKKRSENLKKISG 730
EG +E + RS +K SG
Sbjct: 796 DAEGPVVEKIMSSRSVKKQKESG 818
Score = 48 (22.0 bits), Expect = 7.7e-59, Sum P(6) = 7.7e-59
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1617 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDER 1657
G D GE + E + P+ K P DEI E++ + S+++
Sbjct: 1842 GGDGGEFDREDE-DPEYK--PTRTPFKDEIDEFANSPSEDK 1879
Score = 46 (21.3 bits), Expect = 2.5e-58, Sum P(6) = 2.5e-58
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 1608 KNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNG 1659
KN L G +G D+G + KG + ++++D+ + SE SS G
Sbjct: 2215 KNELKGVEVGADTGS----KSISEKGSEEDEEEKLEDD--DKSEESSQPEAG 2260
Score = 42 (19.8 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1553 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1582
Score = 42 (19.8 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 1868 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 1909
D+SE SS+ SR +S AS+ T R G + ED
Sbjct: 2249 DKSEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMED 2291
Score = 40 (19.1 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 383 DNQV-PSRQPVAIGNGL----PPIHPPQTSLNMT 411
+N V P Q + I G P +H P T+ N T
Sbjct: 31 ENPVNPMGQQMPIDQGFASLQPSLHHPSTNQNQT 64
Score = 39 (18.8 bits), Expect = 1.6e-58, Sum P(6) = 1.6e-58
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 1771 AVSGDSHMDHQQSGSWTHDRDEGED 1795
AVS + D + + S + RDE D
Sbjct: 2261 AVSRGKNFDEESNASMSTARDETRD 2285
Score = 38 (18.4 bits), Expect = 7.7e-59, Sum P(6) = 7.7e-59
Identities = 19/85 (22%), Positives = 35/85 (41%)
Query: 1458 KISSHQKEDELRSGGTV--DLEDDLAGKDR--------YIGSIEGLIRNNIQQYKIDMAD 1507
++ S KEDEL + D E+ K R Y S + N+ Y
Sbjct: 1563 RLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGRWT 1622
Query: 1508 EVINAGRFDQRTTHEERRMTLETLL 1532
++++ GR+ ++ T ++ T+L
Sbjct: 1623 DILSHGRYKRQLTEQDVETICRTIL 1647
Score = 37 (18.1 bits), Expect = 1.6e-58, Sum P(6) = 1.6e-58
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLG 229
Q+ P QQ Q+ +P+PP G
Sbjct: 155 QIRAPYQQ---QQPQPQPPQPAPSG 176
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 690 (248.0 bits), Expect = 7.2e-59, Sum P(4) = 7.2e-59
Identities = 188/529 (35%), Positives = 276/529 (52%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ GL W+L + N+ N ILADEMGLGKT+Q + + Y + G GP LII P +
Sbjct: 860 LREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLS 918
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G+ R + E+ A +F ++TT+E
Sbjct: 919 TIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFE 977
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ +L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 978 MILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELF 1037
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1038 SLLHFLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1079
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE L PK ++ ++ IQ Y R E + K Q
Sbjct: 1080 RRLKEDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTN 1129
Query: 1290 VYKTLNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILD 1334
V L N MELRK CNHP L Y P SD +++S GKL ++D
Sbjct: 1130 V-PNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 1188
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ D
Sbjct: 1189 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1248
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1249 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR-- 1305
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
+V + +S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 1306 LVTR-NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIE 1353
Score = 46 (21.3 bits), Expect = 7.2e-59, Sum P(4) = 7.2e-59
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 612 SDQEVECGLLRTQQQSDF--PADRGKSVAPQ---VSACDAVQVKKPAQATTA 658
++Q+ +C LR+QQ + P S + VS V V P Q T A
Sbjct: 168 NEQQTQCTSLRSQQNRNNLNPGQNSLSQSKNFMNVSGPHRVNVNHPPQMTNA 219
Score = 41 (19.5 bits), Expect = 7.2e-59, Sum P(4) = 7.2e-59
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 1867 HDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
HDQS SK ++++ ++ K LK
Sbjct: 2327 HDQSTQMSKVKKHVREKEFTVKIKDEGGLK 2356
Score = 41 (19.5 bits), Expect = 7.2e-59, Sum P(4) = 7.2e-59
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1617 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 1439 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 1473
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 700 (251.5 bits), Expect = 7.9e-59, Sum P(4) = 7.9e-59
Identities = 190/529 (35%), Positives = 282/529 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I P +
Sbjct: 967 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 1025
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G++ R + S E+ + KF+ ++TT+E
Sbjct: 1026 TIPNWEREFRTWT-ELNVVVYHGSQASRRTIQSYEMYFKDPQGRVIKGSYKFHAIITTFE 1084
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1085 MILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELF 1144
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1145 SLLHFLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1186
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K QA
Sbjct: 1187 RRLKEDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQAN 1236
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L+N F + S DF ++++ GKL ++D
Sbjct: 1237 VPNLLNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 1295
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ D
Sbjct: 1296 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1355
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 1356 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR-- 1412
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1413 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1460
Score = 49 (22.3 bits), Expect = 3.7e-58, Sum P(6) = 3.7e-58
Identities = 29/118 (24%), Positives = 42/118 (35%)
Query: 1678 SGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVS 1737
SG+V K + +ED +GG E EA +T
Sbjct: 2177 SGSVAT--QEKTEGKEDDEEVDGG-------EKDSKQGCEAEAGSVRSELKGMEVTADTG 2227
Query: 1738 PVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 1795
P S + GS E + K +E + E AVS + D + + S + RDE D
Sbjct: 2228 PKSISEKGSEEDEEEKLEDDDKS--EESSQLEGAVSRGKNFDEESNASMSTARDETRD 2283
Score = 42 (19.8 bits), Expect = 3.7e-58, Sum P(6) = 3.7e-58
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1552 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1581
Score = 41 (19.5 bits), Expect = 6.2e-57, Sum P(6) = 6.2e-57
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1744 FGSLSALEARPGSLSKRMPDELEEG 1768
F +L+ L+ GS ++ PD+ E G
Sbjct: 2918 FPALAGLQNAVGSGEEKAPDKAEGG 2942
Score = 40 (19.1 bits), Expect = 7.9e-59, Sum P(4) = 7.9e-59
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 383 DNQV-PSRQPVAIGNGL----PPIHPPQTSLNMT 411
+N V P Q + I G P +H P T+ N T
Sbjct: 31 ENPVNPMGQQMPIDQGFASLQPSLHHPSTNQNQT 64
Score = 39 (18.8 bits), Expect = 7.9e-59, Sum P(4) = 7.9e-59
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1460 SSHQKEDELRSGGTVDLEDDLAGKD 1484
S +K + GG E++L G D
Sbjct: 2930 SGEEKAPDKAEGGAFQEEENLEGSD 2954
Score = 39 (18.8 bits), Expect = 7.9e-59, Sum P(4) = 7.9e-59
Identities = 24/126 (19%), Positives = 48/126 (38%)
Query: 540 EDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVS--PVGQGMSAVTKEPAPVVV 597
E Q + + K+ V+ +S K++ G D ++ + K+ P V
Sbjct: 590 EQQPQQKKKKKKNNHIVAEDPSKSFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRPKVK 649
Query: 598 PGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADR-GKSVAPQVSACDAVQVKKPAQAT 656
+E + P K +E + + + P ++ K+ P+ + KKP
Sbjct: 650 KDPKEPKEPKEK-KEPKEPKTP--KAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEA 706
Query: 657 TALQPK 662
+AL+ K
Sbjct: 707 SALKKK 712
Score = 39 (18.8 bits), Expect = 4.6e-57, Sum P(7) = 4.6e-57
Identities = 21/87 (24%), Positives = 35/87 (40%)
Query: 1458 KISSHQKEDELRSGGTVDLEDDLAGK---------DRYIGSIEG---LIRNNIQQYKIDM 1505
++ S KEDEL DLE D K DR G + N+ Y
Sbjct: 1562 RLYSAVKEDELMEFS--DLESDSEEKPCTKPRRPQDRSQGYARSECFRVEKNLLVYGWGR 1619
Query: 1506 ADEVINAGRFDQRTTHEERRMTLETLL 1532
++++ GR+ ++ T ++ T+L
Sbjct: 1620 WTDILSHGRYKRQLTEQDVETICRTIL 1646
Score = 38 (18.4 bits), Expect = 3.7e-58, Sum P(6) = 3.7e-58
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 1869 QSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGS 1928
++E ++K RRNL +A +S+ + G+ E D K S + AS +
Sbjct: 2408 EAERAAK-RRNL-MEMVAQLRESQVVSENGQ--------EKVVDLSKASREA----ASST 2453
Query: 1929 SNFSAKMSDVIQRRVCT 1945
SNFS+ S I V T
Sbjct: 2454 SNFSSLTSKFILPNVST 2470
Score = 38 (18.4 bits), Expect = 7.4e-57, Sum P(7) = 7.4e-57
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 402 HPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSP 442
H PQ S +M P + +P + P + + R SP
Sbjct: 236 HVPQQSPSMAPSLRHSVPQFHHHPPTALHGESVAHSPRFSP 276
Score = 37 (18.1 bits), Expect = 2.4e-57, Sum P(6) = 2.4e-57
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 200 GRGEKQMEQPQQQVSDQKGEPKPPSQQ 226
G E++ ++ + +V EPK P ++
Sbjct: 635 GSQEEKKKKKRPKVKKDPKEPKEPKEK 661
Score = 37 (18.1 bits), Expect = 4.6e-57, Sum P(7) = 4.6e-57
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 1564 LFDQMDEEFGW 1574
+FD M ++F W
Sbjct: 1983 IFDPMKQQFDW 1993
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 691 (248.3 bits), Expect = 1.3e-58, Sum P(7) = 1.3e-58
Identities = 189/529 (35%), Positives = 281/529 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I P +
Sbjct: 918 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 976
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G++ R + E+ + KF+ ++TT+E
Sbjct: 977 TIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFE 1035
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1036 MILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELF 1095
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1096 SLLHFLEPTRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1137
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K QA
Sbjct: 1138 RRLKEDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGG-GQAN 1187
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L+N F + S DF ++++ GKL ++D
Sbjct: 1188 VPNLLNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 1246
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ D
Sbjct: 1247 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1306
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 1307 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR-- 1363
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1364 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIE 1411
Score = 50 (22.7 bits), Expect = 1.3e-58, Sum P(7) = 1.3e-58
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 208 QPQQQVSDQKGEPKPPSQQTLGG 230
QPQ S G+ PP Q LGG
Sbjct: 123 QPQPAPSGPPGQGHPPHLQQLGG 145
Score = 49 (22.3 bits), Expect = 1.3e-58, Sum P(7) = 1.3e-58
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 1733 TQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSG-DSHMDHQ 1781
T +P +P + A EA+ S++ P+ EE E SG D D +
Sbjct: 2103 TPAATPAAPGQEDKAGAAEAKAREASEK-PEGKEEEEAEGSGKDQRQDRE 2151
Score = 47 (21.6 bits), Expect = 1.3e-58, Sum P(7) = 1.3e-58
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 1616 IGVDSGEIETE--RKRGPKGKKYPNYKEVDDEI--GEYSEASSDERNG 1659
+G+D +++ R+ P G + + KE++D + G Y +E G
Sbjct: 1382 LGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1429
Score = 42 (19.8 bits), Expect = 1.3e-58, Sum P(7) = 1.3e-58
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 1868 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 1909
D+SE SS+ SR +S AS+ T R G + ED
Sbjct: 2192 DKSEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMED 2234
Score = 42 (19.8 bits), Expect = 4.3e-58, Sum P(7) = 4.3e-58
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1503 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1532
Score = 40 (19.1 bits), Expect = 1.1e-57, Sum P(7) = 1.1e-57
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 1744 FGSL-SALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDE 1796
FG +A A PG K E + E + + + + GS R + E E
Sbjct: 2100 FGQTPAATPAAPGQEDKAGAAEAKAREASEKPEGKEEEEAEGSGKDQRQDREAE 2153
Score = 39 (18.8 bits), Expect = 1.3e-58, Sum P(7) = 1.3e-58
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 1925 ASGSSNFSAKMSDVIQRRVCT 1945
AS +SNFS+ S +I V T
Sbjct: 2395 ASSTSNFSSLTSKLILPNVST 2415
Score = 39 (18.8 bits), Expect = 1.3e-58, Sum P(7) = 1.3e-58
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 307 GAPSSPVPVSKQQVTSPTIAGENSP 331
G+ +SP P+S + S + AG P
Sbjct: 342 GSYASPPPMSPLKAMSSSAAGTPPP 366
Score = 39 (18.8 bits), Expect = 7.2e-58, Sum P(6) = 7.2e-58
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 1771 AVSGDSHMDHQQSGSWTHDRDEGED 1795
AVS + D + + S + RDE D
Sbjct: 2204 AVSRGKNFDEESNASMSTARDETRD 2228
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 428 (155.7 bits), Expect = 1.3e-58, Sum P(4) = 1.3e-58
Identities = 115/333 (34%), Positives = 181/333 (54%)
Query: 937 RLQGLSEEEVRSAAACAGE-EVMIRNRFLEMNAPRDGSS-VNKYYSLAHAVNERV-MRQP 993
++ GLSE+ + + E +V+IR MN D S+ + K ++ + QP
Sbjct: 431 KINGLSEDLIWNCKTVIQERDVVIRL----MNKCEDISNKLTKQVTMLTGNGGGWNIEQP 486
Query: 994 SMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
S+L +L+ YQ VGL W+ ++ + LNGILADEMGLGKT+Q +A +AYL + +GN GP
Sbjct: 487 SLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQ-EGNKGP 545
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFI 1111
HLI+VP + + NW E++ W P+++ + Y G++++R ++ F+ +NV+VTTY
Sbjct: 546 HLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCA 605
Query: 1112 MY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX 1168
+ DRS ++ Y I DE +K+ S+ + L + RLLLTGTP+QN+
Sbjct: 606 ISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLEL 665
Query: 1169 XXXXXXXXPEVFDNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P +F + + FS K P AD+ + +++ I H QI++PF
Sbjct: 666 MSLLNFVMPHMFSSSTSEIRRMFSS---KTKP---ADEQSIYEKER--IAHA-KQIIKPF 716
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+LRR E+V LPPK + C MS Q +Y
Sbjct: 717 ILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLY 749
Score = 286 (105.7 bits), Expect = 1.3e-58, Sum P(4) = 1.3e-58
Identities = 70/174 (40%), Positives = 105/174 (60%)
Query: 1312 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
Y + + D L+ GK L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 835 YQHINSYQLDMDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 894
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 895 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 953
Query: 1431 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 1479
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 954 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEADE 1007
Score = 107 (42.7 bits), Expect = 1.3e-24, Sum P(4) = 1.3e-24
Identities = 36/105 (34%), Positives = 53/105 (50%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y +G
Sbjct: 702 EKERIAHA-KQIIKPFILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLY-----SGLFN- 754
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 755 -------RLKKS-INNLEKNTEMCNVMMQLRKMANHPLLHRQYYT 791
Score = 44 (20.5 bits), Expect = 1.3e-58, Sum P(4) = 1.3e-58
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 528 VNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG 582
+++ + G IA L+ ++ G + SS+ ++ ++EA DD++ P G
Sbjct: 180 IDSTSTMDGAIAAALLKFGDAGGGPRKRKLSSSSEAYEEDEA--NDDQSLKKPRG 232
Score = 39 (18.8 bits), Expect = 1.3e-58, Sum P(4) = 1.3e-58
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 297 ANHKANESNMGAPSSPVPVSKQQVTSP-TIAGENSPHAN 334
A A + + PSSP+ +S ++ + ++ N+P ++
Sbjct: 20 APEAAPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSD 58
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 698 (250.8 bits), Expect = 1.8e-58, Sum P(6) = 1.8e-58
Identities = 190/529 (35%), Positives = 281/529 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I P +
Sbjct: 957 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 1015
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G++ R + E+ + KF+ ++TT+E
Sbjct: 1016 TIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFE 1074
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1075 MILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELF 1134
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1135 SLLHFLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1176
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K QA
Sbjct: 1177 RRLKEDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQAN 1226
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L+N F D S DF ++++ GKL ++D
Sbjct: 1227 VPNLLNTM-MELRKCCNHPYLINGAEEKILEEFKDAHNADSPDFQLQAMIQAAGKLVLID 1285
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ D
Sbjct: 1286 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1345
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 1346 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR-- 1402
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1403 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1450
Score = 45 (20.9 bits), Expect = 1.8e-58, Sum P(6) = 1.8e-58
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 201 RGEKQMEQPQQQVS 214
RG+ M+QPQQ++S
Sbjct: 190 RGDFSMQQPQQRMS 203
Score = 44 (20.5 bits), Expect = 1.8e-58, Sum P(6) = 1.8e-58
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 1868 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 1909
D+SE SS+ SR +S AS+ T R G + ED
Sbjct: 2237 DKSEESSQPEAGAVSRGKTFDEESNASMSTARDETRDGFYMED 2279
Score = 42 (19.8 bits), Expect = 1.8e-58, Sum P(6) = 1.8e-58
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1542 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1571
Score = 41 (19.5 bits), Expect = 1.8e-58, Sum P(6) = 1.8e-58
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 630 PADR-GKSVAPQVSACDAVQVKKPAQATTALQPK 662
P +R K+V P+ + KKP +AL+ K
Sbjct: 669 PKERKAKTVTPKPKSSKKSSNKKPDSEASALKKK 702
Score = 41 (19.5 bits), Expect = 1.8e-58, Sum P(6) = 1.8e-58
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 374 LQQFSVHGRDNQVPSRQPVAI-GNGLPPIHPPQTSLNMTPGVDQPL 418
+ QFS G++ +A G G H PQ S N+ P + P+
Sbjct: 202 MSQFS-QGQEGLSQGSPFIATSGPGGHLSHMPQQSPNIAPSLRHPV 246
Score = 39 (18.8 bits), Expect = 7.4e-58, Sum P(6) = 7.4e-58
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 201 RGEKQMEQPQQQVSDQKGEPKPPSQQTLG 229
R Q +QPQ S + P Q +G
Sbjct: 157 RAPYQQQQPQPAPSGPPAQGHPQHMQQMG 185
Score = 38 (18.4 bits), Expect = 9.4e-58, Sum P(6) = 9.4e-58
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQ 225
Q+ P QQ Q PP+Q
Sbjct: 155 QIRAPYQQQQPQPAPSGPPAQ 175
Score = 37 (18.1 bits), Expect = 1.9e-57, Sum P(6) = 1.9e-57
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 460 QGGLATQMPQQRLG-FTKHQ 478
+G + Q PQQR+ F++ Q
Sbjct: 190 RGDFSMQQPQQRMSQFSQGQ 209
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 462 (167.7 bits), Expect = 1.8e-58, Sum P(4) = 1.8e-58
Identities = 116/348 (33%), Positives = 185/348 (53%)
Query: 966 MNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILA 1025
+N +D + N + +H +++ QP ++ +R+YQ++GL WM LY K+NGILA
Sbjct: 512 INNKKDKKNNNNGPTFSH----KLVAQPKIINK-VMRNYQLIGLNWMAVLYKEKINGILA 566
Query: 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAK 1085
DEMGLGKTVQ ++L+A++ E + GPHL++VP +L NW+ E W PS+S + Y G
Sbjct: 567 DEMGLGKTVQTISLLAHIKEAYNDNGPHLVVVPATILANWEREFQTWCPSLSIVRYYGNL 626
Query: 1086 DQRSRL---FSQEVAALKFNVLVTTYE--FIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140
+R L ++ FNV++TTY F DR L + D+ ++I+DEAQ +K+ +S
Sbjct: 627 REREELRYELKKKRPGKDFNVILTTYNLLFANNDRGFLKRFDYSFLILDEAQNIKNSDSK 686
Query: 1141 LARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPT 1200
+++ + RLLLTGTPLQN+ P +F + K + +Q +
Sbjct: 687 RYKNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFLMPHIFGSVKKDNYLLNQLLE----- 741
Query: 1201 HNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+N DD ++ I R+ +IL PF+LRR V L PK+ V C++ Q Y
Sbjct: 742 YNGDD--CDSA-----ITRMKKILSPFILRRLKSTVSKELKPKIEHVEICKLPKFQDETY 794
Query: 1261 DWI----KATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304
I K+ LR + +K + +K Q+ + + N+ + RKT
Sbjct: 795 KNIIERSKSQWKLRNELLLKKEKEEKEKEKQSLINSS-NSSIKKKRKT 841
Score = 236 (88.1 bits), Expect = 1.8e-58, Sum P(4) = 1.8e-58
Identities = 65/170 (38%), Positives = 99/170 (58%)
Query: 1303 KT-CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK-LQRTGHRVLLFSTMTKLLDIL 1360
KT C H L Y+ + + +++ K L IL K + +VL+FS MT++LDIL
Sbjct: 960 KTVCEHEDLGDKYW--IPDEQFIETSTKCLKLKEILAKEIGVNKSKVLIFSQMTRVLDIL 1017
Query: 1361 EEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420
E+ L + R+DG+T + +R+S I F+S ++ +FLLS + G G+NL A+ VI
Sbjct: 1018 EDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKET-IPVFLLSTNSGGLGINLTCANVVI 1076
Query: 1421 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQKEDE 1467
YD NP+ + QA RAHR+GQ+REV +IY E VD I+ H+ ++
Sbjct: 1077 FYDLSFNPQVDRQAEDRAHRLGQEREV-IIYKLLAENTVD-INIHESANQ 1124
Score = 62 (26.9 bits), Expect = 1.8e-58, Sum P(4) = 1.8e-58
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 1294 LNNRCMELRKTCNHPLL 1310
LNN M+LRK NHPLL
Sbjct: 895 LNNILMQLRKAANHPLL 911
Score = 52 (23.4 bits), Expect = 3.7e-13, Sum P(4) = 3.7e-13
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 1251 RMSAIQSA-IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309
RM I S I +K+T + + P+ E + K P +Q + YK + R K N L
Sbjct: 753 RMKKILSPFILRRLKSTVSKELKPKIEHVEICKLPKFQDETYKNIIERSKSQWKLRNELL 812
Query: 1310 L 1310
L
Sbjct: 813 L 813
Score = 47 (21.6 bits), Expect = 8.1e-37, Sum P(4) = 8.1e-37
Identities = 44/198 (22%), Positives = 86/198 (43%)
Query: 1429 KNEEQAVARAHR--IGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDL-----EDD-- 1479
+ E+Q++ + I +KR+ IY ++K + +D G +DL E D
Sbjct: 821 EKEKQSLINSSNSSIKKKRKTSSIYKNNKIEKDEIIEIDDGGDDDGLIDLTKTNDEKDME 880
Query: 1480 LAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQ 1539
L+ K + GS + ++ N + Q + ++ F ++ L T D Y+
Sbjct: 881 LSIKLKSNGSGQFVLNNILMQLRKAANHPLLCKNIFYNDNQIQDIVNHLATKDKDWSDYR 940
Query: 1540 ETVHDVPSLQEVNRMIARSEDEVELFDQM--DEEFG---WIEEMTRYDQVPKWLRASTKE 1594
+D+PSL+E + + + ++F + E+ G WI + + K L+ KE
Sbjct: 941 ---NDIPSLKE----LFDTYSDYDVFKTVCEHEDLGDKYWIPDEQFIETSTKCLKL--KE 991
Query: 1595 VNATIANLSKKPSKNILF 1612
+ A ++K SK ++F
Sbjct: 992 ILAKEIGVNK--SKVLIF 1007
Score = 43 (20.2 bits), Expect = 4.2e-58, Sum P(5) = 4.2e-58
Identities = 25/125 (20%), Positives = 50/125 (40%)
Query: 704 DVKDLLSEEGLEVL--QKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEXXXXXXXXX 761
D +D EE EVL KKR N + G + + +P ++ IE
Sbjct: 367 DTEDDEEEEEEEVLFVNKKRKSN--PLDGSSTPTKPKSKPKPKKII---IEDDSETEDEK 421
Query: 762 XXXXXXEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWR 821
E+D +++E + + + V E++ E + + + E+ + + +
Sbjct: 422 SQII--EIDDEKEEEKQVEQVEQVEQVEQVEQEEGEEEEEEEIESEPTIERLIYACECFS 479
Query: 822 KKLLE 826
K++LE
Sbjct: 480 KRMLE 484
Score = 38 (18.4 bits), Expect = 1.8e-58, Sum P(4) = 1.8e-58
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 204 KQMEQPQQQVSDQKGEPKPPSQQTL 228
+Q+EQ +Q+ +++ E + S+ T+
Sbjct: 444 EQVEQVEQEEGEEEEEEEIESEPTI 468
Score = 38 (18.4 bits), Expect = 6.9e-36, Sum P(4) = 6.9e-36
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 1618 VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
++S ++KR Y N K DEI E + D+
Sbjct: 828 INSSNSSIKKKR-KTSSIYKNNKIEKDEIIEIDDGGDDD 865
Score = 37 (18.1 bits), Expect = 4.2e-58, Sum P(5) = 4.2e-58
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 298 NHKANESNMGAPSSPVPVSKQ 318
N K++ S+ SSP+ KQ
Sbjct: 87 NKKSSTSSNNKKSSPIKKKKQ 107
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 437 (158.9 bits), Expect = 1.9e-58, Sum P(2) = 1.9e-58
Identities = 118/345 (34%), Positives = 183/345 (53%)
Query: 988 RVMRQPSMLRAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF 1046
R + QP ++ +++YQIVG+ W+ L+ N+L+ ILAD+MGLGKT QV+A +A+L E
Sbjct: 550 RFISQPGIMAEDLKMKNYQIVGINWLSLLFENELSCILADDMGLGKTCQVIAFLAHLYE- 608
Query: 1047 KGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ-EVAALKFNVLV 1105
KG GPHL++VP++ + NW E K+ P++S + Y ++ R+++ Q E NV++
Sbjct: 609 KGIKGPHLVVVPSSTIENWLREFQKFCPTLSVMPYYADQNVRAQIREQIEGNRDDINVVI 668
Query: 1106 TTYEFIM--YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
TTY D L +D+ + DE +K SVL L R R + RLLLTGTPLQN
Sbjct: 669 TTYTIAKGKVDAHFLRNMDFCACVYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPLQN 728
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
+ P+VF RK + FS + +H+A L ++ I R
Sbjct: 729 NLQELASLLGFILPKVFQERKDDLQYIFSNKAKTVDESHSA---LLSAQR----IERAKS 781
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
+L+PF+LRR+ V LP K+S V C M+A Q IY+ K +E +++ +
Sbjct: 782 MLKPFVLRRKKHQVI-DLPAKISRVEYCEMNAAQREIYEHEK----------NEVKKLLE 830
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSC 1327
+ K N M+LR+ HPLL+ +++D + K+C
Sbjct: 831 DRAAGKKTGNKSANILMKLRQAAIHPLLHRRHYNDKILTKMSKAC 875
Score = 261 (96.9 bits), Expect = 1.9e-58, Sum P(2) = 1.9e-58
Identities = 67/159 (42%), Positives = 98/159 (61%)
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GK+ L +L + + G RVL+FS +DILE L+ + L + R+DGTTS+EDR+S I
Sbjct: 926 GKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDRQS-I 984
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
+D ++D +FLLS +A G G+NL A+ VII+D NP+ + QA RAHR+GQ REV
Sbjct: 985 MDTFHENTDIPVFLLSTKAGGAGINLACANKVIIFDSSFNPQEDVQAENRAHRVGQTREV 1044
Query: 1448 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDD--LAGKD 1484
+VI + D I E+++ + G L D +AG+D
Sbjct: 1045 EVIRL-VTKDTI-----EEQIYALGQTKLALDQAVAGED 1077
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 678 (243.7 bits), Expect = 2.2e-58, Sum P(4) = 2.2e-58
Identities = 204/628 (32%), Positives = 313/628 (49%)
Query: 939 QGLSEEEV--RSAAACAGEEVMIRN-RFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSM 995
QGLS E A +V I + E++ G V + + A ++ QP
Sbjct: 560 QGLSYAEATWEKDVDIAFAQVAIDEYKAREVSIAVQGKMVEQQRTKGKASLRKLDEQPEW 619
Query: 996 LRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLI 1055
L GTLRDYQ+ GL ++++ + N N ILADEMGLGKTVQ ++++ +L + GP L+
Sbjct: 620 LIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLV 679
Query: 1056 IVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR 1115
+VP + L NW E KWLP ++ I YVG + R EV YEF Y+
Sbjct: 680 VVPLSTLANWAKEFRKWLPGMNIIVYVGTRASR------EVCQ--------QYEF--YNE 723
Query: 1116 SKLSK-VDWKYIIIDEAQRMKDRESVLARDLDRYRC---QRRLLLTGTPLQNDXXXXXXX 1171
K+ + + + ++ +KD+ +VL++ Y RL + L
Sbjct: 724 KKVGRPIKFNALLTTYEVVLKDK-AVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTK 782
Query: 1172 XXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR-----LHQILEP 1226
W F G N D+ ++E K + + LH L P
Sbjct: 783 NKLLITGTPLQNSVEELWALLHFLDPGKFKNKDE-FVENYKNLSSFNESELANLHLELRP 841
Query: 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY 1286
+LRR ++DVE SLPPK+ +LR MS +Q Y WI L + D + V+ N +
Sbjct: 842 HILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWI-----LERNFHDLNKGVRGNQV- 895
Query: 1287 QAKVYKTLNNRCMELRKTCNHPLL----NYPYFSDL---SK-DFLVKSCGKLWILDRILI 1338
+L N +EL+K CNHP L ++ Y D+ SK D ++ S GKL ILD++L+
Sbjct: 896 ------SLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVILDKLLV 949
Query: 1339 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 1398
+L+ T HRVL+FS M ++LDIL EYL R ++R+DG+T E R+ A+ FN+ SD F
Sbjct: 950 RLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDF 1009
Query: 1399 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAV 1455
FLLS RA G G+NL +ADTV+I+D D NP+N+ QA++RAHRIGQ+ V + + ++V
Sbjct: 1010 CFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSV 1069
Query: 1456 VDKISSHQKEDELRSGGTV---DLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512
++I K + + + E L ++ GS +N + A+E+
Sbjct: 1070 EEEILERAKRKMVLDHLVIQKLNAEGRLEKRETKKGS--NFDKNELSAILRFGAEELFKE 1127
Query: 1513 GRFDQRTTHEERRMTLETLLHDEERYQE 1540
+ D+ + M ++ +L E+ +E
Sbjct: 1128 DKNDEESKKRLLSMDIDEILERAEQVEE 1155
Score = 44 (20.5 bits), Expect = 2.2e-58, Sum P(4) = 2.2e-58
Identities = 27/140 (19%), Positives = 56/140 (40%)
Query: 1508 EVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSED-EVELFD 1566
E FD+ R E L +++ +E+ + S+ +++ ++ R+E E + D
Sbjct: 1101 ETKKGSNFDKNELSAILRFGAEELFKEDKNDEESKKRLLSM-DIDEILERAEQVEEKHTD 1159
Query: 1567 QMDEEFGWIEEMTRY----DQVPKWLRASTKEVNATIAN-LSKKPSKNILFGSNIGVDSG 1621
+ + E ++ + D W R + T L+ + ++N + VD
Sbjct: 1160 ETEHELLGAFKVANFCNAEDDGSFWSRWIKPDSVVTAEEALAPRAARN----TKSYVDPS 1215
Query: 1622 EIETERKRGPKGKKYPNYKE 1641
+ KR KG + P + E
Sbjct: 1216 HPDRTSKRKKKGSEPPEHTE 1235
Score = 40 (19.1 bits), Expect = 2.2e-58, Sum P(4) = 2.2e-58
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 1746 SLSALEARPGSLSKRMPDELEEGEIAVSGDSH--MDHQQSGSWTHD 1789
SL + + P K P EEGE++ G+ + Q+ W D
Sbjct: 1498 SLLSTKDGPRKTQKAEPLVKEEGEMSDDGEVYEQFKEQKWMEWCED 1543
Score = 37 (18.1 bits), Expect = 2.2e-58, Sum P(4) = 2.2e-58
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 568 EAY-AGDDKAAVSPVGQGMSAVTKEP 592
E Y A DD A GQG ++P
Sbjct: 258 EPYDAADDGGASKKHGQGWDVSDEDP 283
Score = 37 (18.1 bits), Expect = 2.2e-58, Sum P(4) = 2.2e-58
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 859 DDRNKRMEALKNNDVERYRE---MLLEQ--QTSIPGD 890
+DR++++++ ND E E M Q Q +P D
Sbjct: 136 NDRSEKLDSENENDNENEEEDNEMNKHQSGQADVPAD 172
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 691 (248.3 bits), Expect = 2.7e-58, Sum P(5) = 2.7e-58
Identities = 189/529 (35%), Positives = 281/529 (53%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ G+ W+L + N N ILADEMGLGKT+Q + + Y + KG +GP L+I P +
Sbjct: 969 LREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLS 1027
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G++ R + E+ + KF+ ++TT+E
Sbjct: 1028 TIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFE 1086
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1087 MILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELF 1146
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1147 SLLHFLEPGRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1188
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE +L PK ++ ++ IQ Y R E + K QA
Sbjct: 1189 RRLKEDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGG-GQAN 1238
Query: 1290 VYKTLNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILD 1334
V LN MELRK CNHP L+N F + S DF ++++ GKL ++D
Sbjct: 1239 VPNLLNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 1297
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ D
Sbjct: 1298 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPD 1357
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY
Sbjct: 1358 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR-- 1414
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1415 LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1462
Score = 47 (21.6 bits), Expect = 2.7e-58, Sum P(5) = 2.7e-58
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQ 248
+ Q QP Q S G+ P Q +G MA Q Q QQ
Sbjct: 166 QPQPTQPPQAPSGPPGQGHPQHMQQMGNY-MARGDFSMQQHGQPQQ 210
Score = 44 (20.5 bits), Expect = 2.7e-58, Sum P(5) = 2.7e-58
Identities = 28/135 (20%), Positives = 49/135 (36%)
Query: 1778 MDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGD--S 1835
+ ++S T + EG + P K K I+ ++ ++ C D G
Sbjct: 2165 VQEEKSTEQTESKVEGSEN----PAAKEKSDIK-EETDIADKDTKQDC-DAEAETGSVKC 2218
Query: 1836 SLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASL 1895
L +M + ++ + E D+SE SS+ S+ +S AS+
Sbjct: 2219 ELKDIEMSTDVDPKSISEKGSEEDEEEKLDDDDKSEESSQPEAGAVSQGKNFDEESNASM 2278
Query: 1896 KTGRLNCMPG-HTED 1909
T R G + ED
Sbjct: 2279 STARDETRDGFYMED 2293
Score = 42 (19.8 bits), Expect = 2.7e-58, Sum P(5) = 2.7e-58
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1554 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1583
Score = 42 (19.8 bits), Expect = 9.0e-58, Sum P(5) = 9.0e-58
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 205 QMEQPQQQVSDQKGEPKPPSQQTLG--GQG 232
Q+ P QQ Q+ +P P Q G GQG
Sbjct: 155 QIRAPYQQ-QQQQPQPTQPPQAPSGPPGQG 183
Score = 40 (19.1 bits), Expect = 7.1e-58, Sum P(5) = 7.1e-58
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 1736 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEI-AVSGDSHMDHQQSGSWTHDRDEGE 1794
V P S + GS E + K +E + E AVS + D + + S + RDE
Sbjct: 2229 VDPKSISEKGSEEDEEEKLDDDDKS--EESSQPEAGAVSQGKNFDEESNASMSTARDETR 2286
Query: 1795 D 1795
D
Sbjct: 2287 D 2287
Score = 39 (18.8 bits), Expect = 2.7e-58, Sum P(5) = 2.7e-58
Identities = 20/82 (24%), Positives = 34/82 (41%)
Query: 550 GKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPG--KE--EQQA 605
G D+Q +S ++V +++ KA P KEP VP KE E++A
Sbjct: 628 GLDSQNLSRNSVDCSQEDKKKKKKPKAKKEPKDPKEPKEKKEPKTPKVPKTPKEPKEKKA 687
Query: 606 PVSSVKSDQEVECGLLRTQQQS 627
++ K + +T +S
Sbjct: 688 KNTTPKPKTSKKTSNKKTDSES 709
Score = 37 (18.1 bits), Expect = 9.0e-58, Sum P(5) = 9.0e-58
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 1494 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 1532
+ N+ Y ++++ GR+ ++ T ++ T+L
Sbjct: 1610 VEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTIL 1648
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 397 (144.8 bits), Expect = 8.3e-58, Sum P(3) = 8.3e-58
Identities = 93/276 (33%), Positives = 152/276 (55%)
Query: 990 MRQPSMLRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+ QPS++ L+ YQ +GL W+ L+ +K+N ILADEMGLGKTVQ +A +A+L G
Sbjct: 462 IEQPSIMSENLVLKPYQKIGLNWLALLHKHKVNMILADEMGLGKTVQAIAFLAHLY-VTG 520
Query: 1049 NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTT 1107
+ GPHL++VP + + NW E ++W PS++ + Y G++++R L + ++FNV+VTT
Sbjct: 521 DSGPHLVVVPASTMDNWIREFNQWCPSMNILLYYGSQEERKHLRYDILNKVVEFNVIVTT 580
Query: 1108 YEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164
Y + DRS ++ + + DE +K+ ++ + L + RLLLTGTP+QN+
Sbjct: 581 YNCAISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNN 640
Query: 1165 XXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P +F + + + F + + + + E E+ I H QI+
Sbjct: 641 LLELMSLLNFVMPHMFSSSTSE---IKRLFSSKAKSTD-EQTIFEKER---IAHA-KQIM 692
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+PF+LRR +V LPPK + C+MS Q +Y
Sbjct: 693 KPFILRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLY 728
Score = 309 (113.8 bits), Expect = 8.3e-58, Sum P(3) = 8.3e-58
Identities = 75/187 (40%), Positives = 112/187 (59%)
Query: 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 1359
EL + CN Y L K+ ++ S GK IL+++L +++ G RV+LFS T +LDI
Sbjct: 806 ELHRLCNEFTTLSQY--KLEKELILDS-GKFNILEKLLSDIKKKGDRVVLFSQFTMMLDI 862
Query: 1360 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419
+E +L+ Q Y R+DG T + +R I +FN+ D D FIFLLS +A G G+NL SA+ V
Sbjct: 863 IEVFLRHHQHRYVRLDGKTQISERIHLIDEFNT-DMDIFIFLLSTKAGGLGINLTSANIV 921
Query: 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLE 1477
I++D D NP N++QA R HR+GQ +EVKVI + + +++ + +LR LE
Sbjct: 922 ILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGTIEESMLKISQQKLR------LE 975
Query: 1478 DDLAGKD 1484
D+ D
Sbjct: 976 QDMTTND 982
Score = 105 (42.0 bits), Expect = 5.2e-26, Sum P(4) = 5.2e-26
Identities = 35/105 (33%), Positives = 51/105 (48%)
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
+K I H QI++PF+LRR +V LPPK + C+MS Q +Y
Sbjct: 681 EKERIAHA-KQIMKPFILRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLYS---------- 729
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1316
D +++K+ I + L N M LRK NHPLL+ Y++
Sbjct: 730 ---DLLNKLKKS-IDATEKNSELCNVMMHLRKMANHPLLHRQYYT 770
Score = 37 (18.1 bits), Expect = 8.3e-58, Sum P(3) = 8.3e-58
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 547 ESNGKDAQA---VSSSNVQSLPKEEAYAGD 573
+S +D Q+ SS++ QS P+EE D
Sbjct: 71 DSENEDHQSKSKFSSTHQQSHPREENGTSD 100
Score = 37 (18.1 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 1519 TTHEERRMTLE-TLLHDEERYQETVHDVPSLQEVNRMIA---RSEDEVELFDQMDEEFGW 1574
T E R+ E T L + +E + D + ++++ + D V LF Q
Sbjct: 803 TDFELHRLCNEFTTLSQYKLEKELILDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDI 862
Query: 1575 IEEMTRYDQVPKWLRASTK 1593
IE R+ Q +++R K
Sbjct: 863 IEVFLRHHQ-HRYVRLDGK 880
Score = 37 (18.1 bits), Expect = 5.2e-26, Sum P(4) = 5.2e-26
Identities = 24/121 (19%), Positives = 49/121 (40%)
Query: 781 DRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNR 840
D R+F + C + L Q +K +R L + ++ + + AI +A +R
Sbjct: 535 DNWIREFNQWCPSMNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYNCAIS---SAEDR 591
Query: 841 GVAKYHERILREFSKRKDDDRNKRMEALKNNDVERY--REMLLEQQTSIPGDAAERYAVL 898
+ + R+ F+ + K M A++ + R LL T + + E ++L
Sbjct: 592 SLFR---RLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLL 648
Query: 899 S 899
+
Sbjct: 649 N 649
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 692 (248.7 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 189/529 (35%), Positives = 275/529 (51%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ GL W+L + N+ N ILADEMGLGKT+Q + + Y + G GP LII P +
Sbjct: 859 LREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLS 917
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G+ R + E+ A +F ++TT+E
Sbjct: 918 TIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFE 976
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ +L+ +DW+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 977 MILGGCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELF 1036
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1037 SLLHFLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1078
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE L PK ++ ++ IQ Y R E + K Q
Sbjct: 1079 RRLKEDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTN 1128
Query: 1290 VYKTLNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILD 1334
V L N MELRK CNHP L Y P SD +++S GKL ++D
Sbjct: 1129 V-PNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPSASDFHLQAMIQSAGKLVLID 1187
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ D
Sbjct: 1188 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1247
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1248 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR-- 1304
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
+V + +S+++E D L+ G + ++G+D + I+ L + I+
Sbjct: 1305 LVTR-NSYEREMFDRASLKLGLDKAVLQSMSGRDSNVSGIQQLSKKEIE 1352
Score = 44 (20.5 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 1852 TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKT 1897
+ + + S+S SE + R P RK A +S ASL T
Sbjct: 2180 SSSSSSSSSSSSSSEESDSEEDVQKREGTPHRK-AYDEESVASLST 2224
Score = 41 (19.5 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1617 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 1438 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 1472
Score = 41 (19.5 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 399 PPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQM---QYLRQLNRSSPQSAI 446
PP H + S + ++P P S NSQ Y SP S +
Sbjct: 235 PPAHFLKCSSHQEGNYNRPSPSMTSCSVSNSQQFPSHYSFSSGHVSPSSLL 285
Score = 37 (18.1 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 711 EEGLEVLQKKRSE-NLKKISGILAVNLERKRIRPDLVLRLQ 750
E+ L++ + SE + + ILA +K + P ++L ++
Sbjct: 673 EQPLQLFVENPSEEDAAIVDKILACRTVKKEVSPGVMLDIE 713
Score = 37 (18.1 bits), Expect = 7.0e-57, Sum P(5) = 7.0e-57
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 1867 HDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
H+QS SK ++++ ++ K LK
Sbjct: 2326 HEQSAQMSKVKKHVREKEFTVKIKDEGGLK 2355
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 687 (246.9 bits), Expect = 1.8e-57, Sum P(5) = 1.8e-57
Identities = 188/529 (35%), Positives = 275/529 (51%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ GL W+L + N+ N ILADEMGLGKT+Q + + Y + G GP LII P +
Sbjct: 859 LREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEVLLTGIRGPFLIIAPLS 917
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G+ R + E+ A +F ++TT+E
Sbjct: 918 TIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFE 976
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ +L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 977 MILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELF 1036
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F + F F L+TE++V +L IL+P ML
Sbjct: 1037 SLLHFLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1078
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE L PK ++ ++ IQ Y R E + K Q
Sbjct: 1079 RRLKEDVEKRLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTN 1128
Query: 1290 VYKTLNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILD 1334
V L N MELRK CNHP L Y P SD +++S GKL ++D
Sbjct: 1129 V-PNLVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNPSASDFHLQAMIQSAGKLVLID 1187
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ D
Sbjct: 1188 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1247
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454
SD F+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y
Sbjct: 1248 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR-- 1304
Query: 1455 VVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
+V + +S+++E D L+ G + ++G+D + I+ L + I+
Sbjct: 1305 LVTR-NSYEREMFDRASLKLGLDKAVLQSMSGRDSNVSGIQQLSKKEIE 1352
Score = 50 (22.7 bits), Expect = 1.8e-57, Sum P(5) = 1.8e-57
Identities = 35/166 (21%), Positives = 67/166 (40%)
Query: 1782 QSGSWTHDRDEGEDEQVLQPKIK-RKRSIRVRPRHTV--ERPEERSCTDTPLHRGDSSLL 1838
+S S + E+E + + + R +S V P++ V + P E+ D ++
Sbjct: 2049 KSESLAEEPQSSEEESMSSMETRTRVKSEPVSPKNGVLSQAPGEQKSGGKS--ETDRRMV 2106
Query: 1839 PFQMDNKYPAQLRTDTEMKAHG-ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRA-SLK 1896
+ + P + G ES+S SE SS S R+ S ++ SR+ S
Sbjct: 2107 AARTEPLTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSS 2166
Query: 1897 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRR 1942
+ +C +A S +++S SS+ + + +Q+R
Sbjct: 2167 SSSSSC------SSASSSSSSSSSSSSSSSSSSSEESDSEEEVQKR 2206
Score = 41 (19.5 bits), Expect = 1.8e-57, Sum P(5) = 1.8e-57
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1617 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 1655
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 1438 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 1472
Score = 39 (18.8 bits), Expect = 1.8e-57, Sum P(5) = 1.8e-57
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 399 PPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQ 430
PP H + S ++P P S NSQ
Sbjct: 235 PPAHFLKCSSQQDGSYNRPSPSMTSCSVSNSQ 266
Score = 39 (18.8 bits), Expect = 6.2e-56, Sum P(5) = 6.2e-56
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 1591 STKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYS 1650
S+ +++ ++ S S + S+ S E + K + P+ K D+E
Sbjct: 2164 SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEVQKREGTPHAKAYDEESVASL 2223
Query: 1651 EASSDE 1656
A+ DE
Sbjct: 2224 SATQDE 2229
Score = 37 (18.1 bits), Expect = 1.8e-57, Sum P(5) = 1.8e-57
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 711 EEGLEVLQKKRSE-NLKKISGILAVNLERKRIRPDLVLRLQ 750
E+ L++ + SE + + ILA +K + P ++L ++
Sbjct: 673 EQPLQLFVENPSEEDAAIVDKILACRTVKKEVSPGVMLDIE 713
Score = 37 (18.1 bits), Expect = 3.9e-56, Sum P(5) = 3.9e-56
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 1867 HDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
H+QS SK ++++ ++ K LK
Sbjct: 2327 HEQSPQMSKVKKHVREKEFTVKIKDEGGLK 2356
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 383 (139.9 bits), Expect = 2.9e-57, Sum P(2) = 2.9e-57
Identities = 103/275 (37%), Positives = 158/275 (57%)
Query: 1270 RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF---- 1322
++ PE ++ R V+ N +++V L N M LRK CNHP ++ YP ++++F
Sbjct: 190 QIQPEVKRERTVVEGNIPIESEVNLKLQNIMMLLRKCCNHPYMIEYP-IDPVTQEFKIDE 248
Query: 1323 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
LV + GK ILDR+L +L++ H+VL+FS MT +LDIL +Y R + R+DG+ S
Sbjct: 249 ELVTNSGKFLILDRMLPELKKRCHKVLVFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYS 308
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
+RE I FN+ D + F+FL+S RA G G+NL +ADTVIIYD D NP+++ QA R HRI
Sbjct: 309 EREKNIYSFNT-DPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRI 367
Query: 1442 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 1501
GQ + V V+Y + I QK E R+ LE + K+ + G GL ++ + +
Sbjct: 368 GQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEKLIIHKNHFKGGQSGLSQS--KNF 421
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1536
+D A E++ R E + + E ++ DE+
Sbjct: 422 -LD-AKELMEL--LKSRDYEREVKGSREKVISDED 452
Score = 253 (94.1 bits), Expect = 2.9e-57, Sum P(2) = 2.9e-57
Identities = 58/167 (34%), Positives = 85/167 (50%)
Query: 1123 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDN 1182
WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+ P+VFD+
Sbjct: 4 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 63
Query: 1183 RKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 1242
K+F WF E +D + E++ ++H LHQIL PF+LRR DV +PP
Sbjct: 64 LKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPP 118
Query: 1243 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
K +V+ + Q Y I + EK V+ +P + K
Sbjct: 119 KREVVVYAPLCNKQEIFYTAIVNRTIANMFGSCEKETVELSPTGRPK 165
Score = 55 (24.4 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 29/127 (22%), Positives = 56/127 (44%)
Query: 703 YDVKDLLSEEGLEVLQKKRSEN-LKKISGILAVNLERKRIRPDLVLRLQIEXXXXXXXXX 761
+D+ L SE +++ K+R +N L + IL L R R++ D+ L + +
Sbjct: 71 FDITSL-SETAEDIIAKEREQNVLHMLHQILTPFLLR-RLKSDVALEVPPKREVVVYAPL 128
Query: 762 XXXXXXEVDQQQQEIMAMPDRQYRKFVRLCERQRVELM---RQVQTSQKAMREKQLKSIS 818
++Q+ A+ +R CE++ VEL R + S+K++ +L
Sbjct: 129 -------CNKQEIFYTAIVNRTIANMFGSCEKETVELSPTGRPKRRSRKSINYSELDQFP 181
Query: 819 QWRKKLL 825
+KL+
Sbjct: 182 SELEKLI 188
Score = 42 (19.8 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 1764 ELEEGEIAVSGDSHMDHQQSGSWTH-DRDEGEDEQVL---QPKIKRKRSI 1809
E E E++ +G ++S +++ D+ E E+++ QP++KR+R++
Sbjct: 152 EKETVELSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQPEVKRERTV 201
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 400 (145.9 bits), Expect = 4.3e-57, Sum P(5) = 4.3e-57
Identities = 103/244 (42%), Positives = 144/244 (59%)
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI--KATGTLRVDPE 1274
+ L IL+P++LRR E VE S+ PK ++ ++ +Q Y I K LR
Sbjct: 724 VESLQAILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIYEKNFSFLR---- 779
Query: 1275 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF-SDLS--KD----F--LVK 1325
+ + + P +L N MELRK CNHP L S+ S KD F L++
Sbjct: 780 -KGGKSNQGP--------SLLNIMMELRKCCNHPYLTKGVEQSETSSIKDKDQIFQKLIQ 830
Query: 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385
+ GKL ++D++L KL+ H+VL+FS M +LDIL++YL +R + RIDG+ DR++
Sbjct: 831 ASGKLVLIDKLLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQA 890
Query: 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445
AI F+ DSD F+FLL RA G G+NL +ADTVII+D D NP+N+ QA AR HRIGQ +
Sbjct: 891 AIDRFSKPDSDRFVFLLCTRAGGIGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQDK 950
Query: 1446 EVKV 1449
VKV
Sbjct: 951 MVKV 954
Score = 196 (74.1 bits), Expect = 4.3e-57, Sum P(5) = 4.3e-57
Identities = 39/87 (44%), Positives = 52/87 (59%)
Query: 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGT 1159
KFNVL+TTYE + DR+ LS++ WKY++IDEA R+K++ L +L Y LLLTGT
Sbjct: 625 KFNVLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSCKLTIELRSYSFDHLLLLTGT 684
Query: 1160 PLQNDXXXXXXXXXXXXPEVFDNRKAF 1186
PLQN+ P+ F N F
Sbjct: 685 PLQNNTQELWSLLNFLDPKQFSNLDQF 711
Score = 178 (67.7 bits), Expect = 4.3e-57, Sum P(5) = 4.3e-57
Identities = 33/96 (34%), Positives = 54/96 (56%)
Query: 987 ERVMRQPSMLRAGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045
+++ + P G LR YQ+ GL W+ ++ + N IL DEMGLGKTVQ ++++ L +
Sbjct: 494 KKIDQSPDYFTKGNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTVQSVSILETLRK 553
Query: 1046 FKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYY 1081
G GP L++ P + +WK E W + +Y+
Sbjct: 554 VHGIRGPFLVVAPLTTIPHWKREFENWTDMNALVYH 589
Score = 45 (20.9 bits), Expect = 8.8e-57, Sum P(6) = 8.8e-57
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 1742 QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDS-HMDHQQSGSWTHDRDEGEDEQ 1797
+KF S + + K D+L++G ++ S S + QQ S D D ED++
Sbjct: 1644 KKFRSNVLFNTKENQM-KLKQDKLQKGGLSSSTSSTDLQQQQQQSTGDDDDLLEDDE 1699
Score = 45 (20.9 bits), Expect = 4.5e-56, Sum P(7) = 4.5e-56
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1464 KEDELRSGGTVDLEDDLAGKDR 1485
KE E SGG ++DD + K R
Sbjct: 1803 KEKEKGSGGDSGVDDDASDKKR 1824
Score = 43 (20.2 bits), Expect = 4.3e-57, Sum P(5) = 4.3e-57
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 575 KAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVE 617
K PVG+ +V+K+ A + Q S +S+ E E
Sbjct: 200 KPVSKPVGKPKGSVSKKAAALAKKKNNVQSESEESEESESESE 242
Score = 41 (19.5 bits), Expect = 7.2e-56, Sum P(7) = 7.2e-56
Identities = 11/61 (18%), Positives = 26/61 (42%)
Query: 540 EDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPG 599
E++ +E ++ + ++ +E+ D + G+ ++V+K P P V
Sbjct: 94 ENENNDVEMKDEEEEEEEEEELEEEEEEDDSEDSDDLSKKSRGRPKASVSKPPPPKVPKS 153
Query: 600 K 600
K
Sbjct: 154 K 154
Score = 40 (19.1 bits), Expect = 4.3e-57, Sum P(5) = 4.3e-57
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 1854 TEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANA 1888
T+M + +SN+ + S SS ++ LP ++ N+
Sbjct: 983 TKMNSLADSNN--GNNSSSSSTTKDELPDKETINS 1015
Score = 40 (19.1 bits), Expect = 8.8e-57, Sum P(6) = 8.8e-57
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 1851 RTDTEMKAHGESNSLRHDQSEPSSKSRRNLP 1881
RT+ ++ +N + ++ ++ ++ + NLP
Sbjct: 2195 RTNKNNYSNNNNNDINNNNNDNNNNNNNNLP 2225
Score = 39 (18.8 bits), Expect = 4.5e-56, Sum P(7) = 4.5e-56
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1523 ERRMTLETLLHDEERYQE 1540
E++ +L +LH EE + +
Sbjct: 2013 EKKASLINILHSEEEFSD 2030
Score = 39 (18.8 bits), Expect = 1.1e-55, Sum P(7) = 1.1e-55
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 857 KDDDRNKRMEALKNNDVERYREMLLEQQ 884
KD++ N +E +K+ + E E LE++
Sbjct: 92 KDENENNDVE-MKDEEEEEEEEEELEEE 118
Score = 39 (18.8 bits), Expect = 1.1e-55, Sum P(7) = 1.1e-55
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 857 KDDDRNKRMEALKNNDVERYREMLLEQQ 884
++DD + + +NNDVE E E++
Sbjct: 84 ENDDNDVEKDENENNDVEMKDEEEEEEE 111
Score = 37 (18.1 bits), Expect = 5.8e-56, Sum P(6) = 5.8e-56
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 1791 DEGEDEQVLQPKIKRKRSI 1809
D G D+ K KRK +I
Sbjct: 1812 DSGVDDDASDKKRKRKENI 1830
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 676 (243.0 bits), Expect = 1.1e-55, Sum P(5) = 1.1e-55
Identities = 186/530 (35%), Positives = 275/530 (51%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR+YQ+ GL W+L + N+ N ILADEMGLGKT+Q + + Y + G GP LII P +
Sbjct: 857 LREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLSGIRGPFLIIAPLS 915
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYE 1109
+ NW+ E W ++ + Y G+ R + E+ +F ++TT+E
Sbjct: 916 TITNWEREFRTWT-DLNVVVYHGSMISRQMIQQYEMYFRDSQGRIVRGTYRFQAIITTFE 974
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
I+ +L+ ++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 975 MILGGCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELF 1034
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P F F F L+TE++V +L IL+P ML
Sbjct: 1035 SLLHFLEPLRFPAESTFMQEFGD---------------LKTEEQV---QKLQAILKPMML 1076
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
RR EDVE L PK ++ ++ IQ Y R E + K QA
Sbjct: 1077 RRLKEDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGA-GQAN 1126
Query: 1290 VYKTLNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILD 1334
V L N MELRK CNHP L Y P D +++S GKL ++D
Sbjct: 1127 V-PNLVNTMMELRKCCNHPYLIKGAEEKILGEFKETYNPTAPDFHLQAMIQSAGKLVLID 1185
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ D
Sbjct: 1186 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1245
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNE-EQAVARAHRIGQKREVKVIYME 1453
SD F+FLL RA G G+NL +ADT II+D D NP+N+ ++A AR HRIGQ + VKV Y
Sbjct: 1246 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQKAQARCHRIGQNKAVKV-YR- 1303
Query: 1454 AVVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1499
++ + +S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 1304 -LITR-NSYEREMFDRASLKLGLDKAVLQSMSGRENSVGGIQQLSKKEIE 1351
Score = 43 (20.2 bits), Expect = 1.1e-55, Sum P(5) = 1.1e-55
Identities = 35/192 (18%), Positives = 72/192 (37%)
Query: 1749 ALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKR-KR 1807
AL A P + R+PD ++ D+ + +S + D E+E + + + +
Sbjct: 2020 ALSASPLTPQSRLPD----AKVNTPEDTKV---KSENRKEDAQSSEEESMSTEETQTVMK 2072
Query: 1808 SIRVRPRH--TVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSL 1865
S + P++ V+ E + D ++ + + P + G +S
Sbjct: 2073 SEPLSPKNGAPVQNTEHKPSVKI---EADRRMVAARTEPLTPNPASKKQRVSKRGSDSSS 2129
Query: 1866 RHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANA 1925
D S R + SR +++ S +S R + + S +++
Sbjct: 2130 DSD----SDSDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSS-SSSSSSS 2184
Query: 1926 SGSSNFSAKMSD 1937
S SS+ S++ SD
Sbjct: 2185 SSSSSSSSEESD 2196
Score = 40 (19.1 bits), Expect = 1.1e-55, Sum P(5) = 1.1e-55
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 400 PIHPPQTSLNMTPGVDQPLPV 420
PIHP S M P V P+
Sbjct: 104 PIHPQNQSNGMFPDVADGSPM 124
Score = 38 (18.4 bits), Expect = 1.1e-55, Sum P(5) = 1.1e-55
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 1542 VHDVPSLQEVNRMIARSEDEVELFDQMDEE 1571
V D P +++ R + ++DE+ +++ E
Sbjct: 1442 VIDTPRIRKQTRPFSATKDELAELSEVESE 1471
Score = 37 (18.1 bits), Expect = 1.1e-55, Sum P(5) = 1.1e-55
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 464 ATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRA 506
A Q PQ+ L Q Q+ + ++GEG +E +A
Sbjct: 615 AKQTPQKSLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAKA 657
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 425 (154.7 bits), Expect = 4.2e-54, Sum P(2) = 4.2e-54
Identities = 122/360 (33%), Positives = 181/360 (50%)
Query: 938 LQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAH-AVN-ERVMRQPSM 995
LQG + A C MI N + D + ++ + + +++ E +QPS
Sbjct: 349 LQGFDAVD-SLIAKCERYGAMISNTMRSWHNLFDDKKMEQFLNTSTGSISYEYNSQQPSS 407
Query: 996 LRAG-TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHL 1054
+ +G TL+ YQIVGL W+ +Y KL+GILADEMGLGKT QV++ +A L E KG HL
Sbjct: 408 IASGITLKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLASLKE-KGIQNRHL 466
Query: 1055 IIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIM 1112
++VP++ L NW E K+ PS+ Y G + +R R + + F+VLVTTY+
Sbjct: 467 VVVPSSTLGNWLREFEKFCPSLRVESYSGTQSERINKRYYLMDT---DFDVLVTTYQLAS 523
Query: 1113 Y---DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
DRS L K + I DE +K+R S + L RLL+TGTPLQN+
Sbjct: 524 GSRDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHLMNIPANFRLLITGTPLQNNLKELI 583
Query: 1170 XXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228
P+VFDN D + +G A +L E+ I R I+ PF+
Sbjct: 584 SLLAFMLPKVFDNNMQGLDIIYKIKTTSDGDIERA---YLSQER----ISRAKTIMNPFI 636
Query: 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQKNPIYQ 1287
LRRR E+V LPPK+ V C M Q ++Y ++ + + E+ +++K ++Q
Sbjct: 637 LRRRKENVLSDLPPKIQHVEYCHMEETQLSLYLSVLELKNLVNANRENILMQLRKAALHQ 696
Score = 229 (85.7 bits), Expect = 4.2e-54, Sum P(2) = 4.2e-54
Identities = 61/175 (34%), Positives = 98/175 (56%)
Query: 1337 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396
L+K R R+L+FS T++LDILE L L + R+DG+T +E R+ I DF+++++
Sbjct: 773 LLKKSRPNERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNEN- 831
Query: 1397 CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVV 1456
+FLLS ++ G G+NL A+ VI++D NP ++ QA RAHR+GQ R V V +
Sbjct: 832 YKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRL---- 887
Query: 1457 DKISSHQKEDELR--SGGTVDLEDDLAGKDRYIGS-IEGLIRNNIQQY-KIDMAD 1507
I+ + E+ +R + + LE L I I G + ++Q ++D D
Sbjct: 888 --ITKNTIEENIRRLANTKLTLESSLTTDSEKIQKEISGELMKSLQMDGRVDTMD 940
>UNIPROTKB|G3N326 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:DAAA02057908
Ensembl:ENSBTAT00000063921 Uniprot:G3N326
Length = 934
Score = 571 (206.1 bits), Expect = 8.0e-54, Sum P(2) = 8.0e-54
Identities = 116/278 (41%), Positives = 169/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR G LR+YQ +GL W++++Y KLNGILADEMGLGKT+Q ++L+A+L KGN+GP
Sbjct: 601 PLLLR-GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 659
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ EL +W PS + Y GA+ +R F+V +T+Y+ ++
Sbjct: 660 HLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 719
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + +W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN
Sbjct: 720 QDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLM 779
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + + + E ++ RLH++L PF+LRR
Sbjct: 780 HFLMPHVFQSHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRV 831
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 1270
DVE +P K V+RCR+S Q +YD A T +
Sbjct: 832 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK 869
Score = 137 (53.3 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 815 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 868
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
K + + ++ N M+LRK CNHP L P
Sbjct: 869 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 899
Score = 72 (30.4 bits), Expect = 8.0e-54, Sum P(2) = 8.0e-54
Identities = 31/141 (21%), Positives = 55/141 (39%)
Query: 535 SGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQ----GMSAVTK 590
SG E+ +E+N D + ++ + P+E++ + D A + T
Sbjct: 447 SGSSEEEDEDEVEANSSDCEPEGATEAEEAPQEDSSSQSDSAEEQSEDEDEEHSEEEETS 506
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQE--------VECGLLRTQQQSDFPADRGKSV-APQV 641
E + EE + S ++D+E VE L R ++QS+ G P
Sbjct: 507 ESSESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTT 566
Query: 642 SACDAVQVKKPAQATTALQPK 662
+ ++ A A +LQPK
Sbjct: 567 TLGPKKEITDIAAAAESLQPK 587
Score = 54 (24.1 bits), Expect = 6.2e-52, Sum P(2) = 6.2e-52
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
+Q+Q+E A + Q K R+ ++ + +K ++ KQ + + RKK L+ H
Sbjct: 157 EQRQKEERARREEQ-AKLRRIASAMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLH 214
Score = 42 (19.8 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
+++ G AE Q R +E ++ + ++SLP + G + +P + T+
Sbjct: 290 EEQQEGNDAETQRREIELLRREGELPLEELLRSLPPQ-LLGGPSSPSGTPSSH--ESDTR 346
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEV 616
+ P G EE+ + V VK V
Sbjct: 347 D-GPE--EGGEEEPSQVLKVKPPPSV 369
Score = 38 (18.4 bits), Expect = 3.0e-50, Sum P(2) = 3.0e-50
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 554 QAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSD 613
Q ++SS S P G AA SP G + P +EE++ +++ +
Sbjct: 235 QPLASSKAGSSP----CLGSSSAASSPPPPGSRMDDEAIDGDFQPQEEEEEDDEETIEVE 290
Query: 614 QEVECGLLRTQQQ 626
++ E TQ++
Sbjct: 291 EQQEGNDAETQRR 303
Score = 37 (18.1 bits), Expect = 3.8e-50, Sum P(2) = 3.8e-50
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 207 EQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQ 245
++ Q + G P P TLG + +I ++ Q
Sbjct: 547 DEEQSEADGGSGPPTPGPTTTLGPKKEITDIAAAAESLQ 585
>UNIPROTKB|E1C188 [details] [associations]
symbol:Gga.53842 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 EMBL:AADN02034826 IPI:IPI00592312
Ensembl:ENSGALT00000003680 ArrayExpress:E1C188 Uniprot:E1C188
Length = 3044
Score = 437 (158.9 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 105/278 (37%), Positives = 154/278 (55%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS+L G LR+YQ +GL W+ LY LNGILADE GLGKTVQ++A A+L +GN+GP
Sbjct: 1084 PSLLY-GPLREYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGP 1142
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK-FNVLVTTYEFI 1111
HL++V + ++ W+ EL +W P + + Y G++ + R QE + FNV +T+Y+ +
Sbjct: 1143 HLVVVRSCNILKWELELKRWCPGLKILLYFGSQ-RELRAKRQEWSEPNSFNVCITSYKQL 1201
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXX 1171
K+ WKY+I+DE Q++K+ L R Q RLLL TPL N
Sbjct: 1202 FKGHPAFMKMRWKYLIVDEMQQIKNMTEKHWEALFSLRSQHRLLLIDTPLHNTLMELWTM 1261
Query: 1172 XXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
P + + + D F + P + D+ K++I RLH++++PF+LRR
Sbjct: 1262 VHFLIPGI---SRPYLD-----FPVKAPNEE-NQDYCH---KLVI--RLHRMIQPFILRR 1307
Query: 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGT 1268
DVE L K VL+CR+S+ Q A+Y D I GT
Sbjct: 1308 SKRDVEKQLTKKYEHVLKCRLSSRQKAMYEDVILQPGT 1345
Score = 229 (85.7 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 75/223 (33%), Positives = 116/223 (52%)
Query: 1286 YQAKVYK-TLNNRCM----ELRKTCNHPLLNYPYFSDLSKDFLVK-SCGKLWILDRILIK 1339
++ KV+K +L + +LR+ LL +P DL LV+ GKL L +L+K
Sbjct: 1780 HRLKVFKHSLKQKAAPHLHQLRRITTPQLLQFP---DLR---LVQYDSGKLEALAVLLLK 1833
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399
L+ G RVL+ S M +LDILE +L + L + RID + E R+ + FN D F
Sbjct: 1834 LKSEGRRVLILSQMILMLDILELFLNFHFLTFVRIDEYANHEQRQELMKSFN-RDKRIFC 1892
Query: 1400 FLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI 1459
+LS + G+NL ADTV+ YD D NP + +A RIG+ +++ + + +
Sbjct: 1893 AILSSHSRSTGVNLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCKDIHIYRL------V 1946
Query: 1460 SSHQKEDELRSGGTVDLEDDLA--GKDRYIGSIEGLIRNNIQQ 1500
S + E++L GT DL ++A G D Y S+ L + IQ+
Sbjct: 1947 SGNSVEEKLLKNGTKDLIREVAAQGND-Y--SMAFLTQQTIQE 1986
Score = 67 (28.6 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 32/128 (25%), Positives = 58/128 (45%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVEL--MRQVQTSQKAMREKQ----LKSISQWRKK 823
D Q ++ + + R+ E ++ L +R++ Q+A R K L QW
Sbjct: 760 DNSQDKLAEQVKLENQIHQRIAELRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMAT 819
Query: 824 --LLEAHWAIRDARTARNRGVAKYHE--RILREFSKRKDDDRNKRMEALKNNDVERYREM 879
E W + A+ R VA+YHE ++ E +KR++ ++ +R+ A ++E Y
Sbjct: 820 DFAQERKWKMATAKKMV-RTVARYHEEKKLNEERAKREEQNKLRRIAASIAREIE-YFWS 877
Query: 880 LLEQQTSI 887
+EQ I
Sbjct: 878 NIEQVVEI 885
Score = 51 (23.0 bits), Expect = 4.7e-53, Sum P(5) = 4.7e-53
Identities = 35/176 (19%), Positives = 56/176 (31%)
Query: 272 NIDL-SQPANASLIAQLIPIMQSRIVANHKANESNMGAP--SSPVPVSKQQVTSPTI--A 326
N+ + S PA + Q I++S + P S+P+P QQ P I
Sbjct: 595 NVPMTSLPAALQISQQQPQIVESPTQPQIQVKIQPQSVPLTSAPLPAPLQQQVPPAIHVQ 654
Query: 327 GENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQV 386
G+ + RP+ P +A ++ S +
Sbjct: 655 GQTPNQVSQPQATIQQQAVTLTRPSADPVQTSQRLTANILPPTSSVAPAAISGTAPPSTY 714
Query: 387 P---SRQPVAIGNGLPPI--HPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQL 437
P +R A L PI PP ++ P P +NSQ + Q+
Sbjct: 715 PVQTNRTSPATNKSLSPIASKPPGLAVAAAPKSQSPAQNAAVLPQDNSQDKLAEQV 770
Score = 51 (23.0 bits), Expect = 2.0e-11, Sum P(4) = 2.0e-11
Identities = 22/109 (20%), Positives = 43/109 (39%)
Query: 565 PKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECG-LLRT 623
P + + + V P Q VT A V G+ ++P+++V S+Q G +++
Sbjct: 1466 PVQYGQKPEGRTVVFPSTQVQRTVTT--ATVTQQGQVRGRSPIATVSSNQGKRGGEVVKI 1523
Query: 624 QQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHG 672
Q + +G+ P+ Q K + + L+ G + G
Sbjct: 1524 AQLASIAGAQGRIAQPETPVTLQFQGNKFTLSHSQLRQLTAGQPLQLQG 1572
Score = 50 (22.7 bits), Expect = 5.9e-53, Sum P(5) = 5.9e-53
Identities = 25/97 (25%), Positives = 38/97 (39%)
Query: 379 VHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENS-QMQYLRQL 437
V G+D Q + PVAI LPP S P Q +G N+ +M+ ++
Sbjct: 445 VTGKDGQTGT--PVAIATQLPPNVSAAFSSQQQPFQHQTHTGTPVTGTVNTIEMEAFKRQ 502
Query: 438 NRSSP--QSAIPXXXXXXXXXXXXQGGLATQMPQQRL 472
+P S P G+A+ +P Q+L
Sbjct: 503 QTLTPADSSKRPRIEVGRHGMVFQHPGVASGVPLQQL 539
Score = 49 (22.3 bits), Expect = 3.3e-51, Sum P(5) = 3.3e-51
Identities = 28/130 (21%), Positives = 53/130 (40%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQ------WR 821
E + + I A R+ F E Q VE+ Q++ +K + LK IS+ +
Sbjct: 856 EEQNKLRRIAASIAREIEYFWSNIE-QVVEIKLQIEFQEKRKKALNLKKISRKGNCVSFC 914
Query: 822 KKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREML- 880
KK + + A R+ G + L + +++ + EA K ++ E+
Sbjct: 915 KKFITSRPTSLSADIGRSSGRKRKASTSLTDEEVEDEEETIEEQEA-KEGNINHQTELSN 973
Query: 881 LEQQTSIPGD 890
L ++ +P D
Sbjct: 974 LVKEAELPLD 983
Score = 48 (22.0 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLR-VDPEDEKRRVQKNPIYQAK 1289
LPP VS + Q + TGT+ ++ E KR+ P +K
Sbjct: 462 LPPNVSAAFSSQQQPFQHQTHTGTPVTGTVNTIEMEAFKRQQTLTPADSSK 512
Score = 45 (20.9 bits), Expect = 1.9e-52, Sum P(5) = 1.9e-52
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 391 PVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIP 447
P + L P++ P TSL + Q P S P Q+Q Q +S P ++ P
Sbjct: 584 PPQLPGRLQPVNVPMTSLPAALQISQQQPQIVES-PTQPQIQVKIQ-PQSVPLTSAP 638
Score = 41 (19.5 bits), Expect = 2.6e-53, Sum P(4) = 2.6e-53
Identities = 17/90 (18%), Positives = 33/90 (36%)
Query: 353 SPSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTP 412
SP+ + +++ +QQF + R + + N + P+ + +TP
Sbjct: 35 SPAASFAPSASPSAPQSPSYQIQQF-IMSRSPVAGQNVNITLQN-VGPVASGNQQITLTP 92
Query: 413 GVDQPLPVKNSSGPENSQMQYLRQLNRSSP 442
LP+ N + P R+ SP
Sbjct: 93 -----LPIPNPTSPSFQFSPQQRRFEHGSP 117
Score = 41 (19.5 bits), Expect = 8.0e-52, Sum P(5) = 8.0e-52
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 578 VSPVGQGMSAVTKEPAPVVVP 598
V PV G +T P P+ P
Sbjct: 78 VGPVASGNQQITLTPLPIPNP 98
Score = 39 (18.8 bits), Expect = 4.7e-53, Sum P(5) = 4.7e-53
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 209 PQQQVSDQKGEPKPPSQQTL 228
PQQ S +P P QTL
Sbjct: 127 PQQVQSQSPTQPSPVPVQTL 146
Score = 39 (18.8 bits), Expect = 1.3e-33, Sum P(5) = 1.3e-33
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1822 ERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNS-LRHDQSEPSSKSR 1877
ER C+ P++ D + + P+Q+ +D+ + G N L PS R
Sbjct: 1680 ERRCSRAPVYGSDLLSICLLTGERRPSQV-SDSSWRWAGFVNCCLSSASGSPSDPLR 1735
Score = 37 (18.1 bits), Expect = 8.0e-52, Sum P(5) = 8.0e-52
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 422 NSSGPENSQMQYLRQLNRS 440
+ +GP+N+Q RQL RS
Sbjct: 3 HGNGPQNAQ----RQLQRS 17
Score = 37 (18.1 bits), Expect = 2.0e-33, Sum P(5) = 2.0e-33
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 1514 RFDQRTTHEERRMTLETLLHDE 1535
R D+ HE+R+ +++ D+
Sbjct: 1867 RIDEYANHEQRQELMKSFNRDK 1888
>UNIPROTKB|E1C186 [details] [associations]
symbol:Gga.53842 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0016607 GO:GO:0003682
GO:GO:0035267 GO:GO:0043968 GO:GO:0043967 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:MQKQKLQ EMBL:AADN02034826
IPI:IPI00587546 Ensembl:ENSGALT00000003682 ArrayExpress:E1C186
Uniprot:E1C186
Length = 3118
Score = 437 (158.9 bits), Expect = 2.9e-53, Sum P(4) = 2.9e-53
Identities = 105/278 (37%), Positives = 154/278 (55%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS+L G LR+YQ +GL W+ LY LNGILADE GLGKTVQ++A A+L +GN+GP
Sbjct: 1084 PSLLY-GPLREYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGP 1142
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK-FNVLVTTYEFI 1111
HL++V + ++ W+ EL +W P + + Y G++ + R QE + FNV +T+Y+ +
Sbjct: 1143 HLVVVRSCNILKWELELKRWCPGLKILLYFGSQ-RELRAKRQEWSEPNSFNVCITSYKQL 1201
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXX 1171
K+ WKY+I+DE Q++K+ L R Q RLLL TPL N
Sbjct: 1202 FKGHPAFMKMRWKYLIVDEMQQIKNMTEKHWEALFSLRSQHRLLLIDTPLHNTLMELWTM 1261
Query: 1172 XXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
P + + + D F + P + D+ K++I RLH++++PF+LRR
Sbjct: 1262 VHFLIPGI---SRPYLD-----FPVKAPNEE-NQDYCH---KLVI--RLHRMIQPFILRR 1307
Query: 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGT 1268
DVE L K VL+CR+S+ Q A+Y D I GT
Sbjct: 1308 SKRDVEKQLTKKYEHVLKCRLSSRQKAMYEDVILQPGT 1345
Score = 229 (85.7 bits), Expect = 2.9e-53, Sum P(4) = 2.9e-53
Identities = 75/223 (33%), Positives = 116/223 (52%)
Query: 1286 YQAKVYK-TLNNRCM----ELRKTCNHPLLNYPYFSDLSKDFLVK-SCGKLWILDRILIK 1339
++ KV+K +L + +LR+ LL +P DL LV+ GKL L +L+K
Sbjct: 1859 HRLKVFKHSLKQKAAPHLHQLRRITTPQLLQFP---DLR---LVQYDSGKLEALAVLLLK 1912
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399
L+ G RVL+ S M +LDILE +L + L + RID + E R+ + FN D F
Sbjct: 1913 LKSEGRRVLILSQMILMLDILELFLNFHFLTFVRIDEYANHEQRQELMKSFN-RDKRIFC 1971
Query: 1400 FLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI 1459
+LS + G+NL ADTV+ YD D NP + +A RIG+ +++ + + +
Sbjct: 1972 AILSSHSRSTGVNLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCKDIHIYRL------V 2025
Query: 1460 SSHQKEDELRSGGTVDLEDDLA--GKDRYIGSIEGLIRNNIQQ 1500
S + E++L GT DL ++A G D Y S+ L + IQ+
Sbjct: 2026 SGNSVEEKLLKNGTKDLIREVAAQGND-Y--SMAFLTQQTIQE 2065
Score = 67 (28.6 bits), Expect = 2.9e-53, Sum P(4) = 2.9e-53
Identities = 32/128 (25%), Positives = 58/128 (45%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVEL--MRQVQTSQKAMREKQ----LKSISQWRKK 823
D Q ++ + + R+ E ++ L +R++ Q+A R K L QW
Sbjct: 763 DNSQDKLAEQVKLENQIHQRIAELRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMAT 822
Query: 824 --LLEAHWAIRDARTARNRGVAKYHE--RILREFSKRKDDDRNKRMEALKNNDVERYREM 879
E W + A+ R VA+YHE ++ E +KR++ ++ +R+ A ++E Y
Sbjct: 823 DFAQERKWKMATAKKMV-RTVARYHEEKKLNEERAKREEQNKLRRIAASIAREIE-YFWS 880
Query: 880 LLEQQTSI 887
+EQ I
Sbjct: 881 NIEQVVEI 888
Score = 60 (26.2 bits), Expect = 2.9e-12, Sum P(4) = 2.9e-12
Identities = 29/112 (25%), Positives = 46/112 (41%)
Query: 565 PKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQ--EVECGLLR 622
P + + + V P Q VT A V G+ ++P+++V S+Q + +
Sbjct: 1466 PVQYGQKPEGRTVVFPSTQVQRTVTT--ATVTQQGQVRGRSPIATVSSNQGKRIAAAQFQ 1523
Query: 623 TQQQSDFPADRGKSVAPQVSACDAVQ-VKKPAQATTALQPKDVGAARKYHGP 673
T Q S A R + A +A VK+ Q TA Q +G A+ P
Sbjct: 1524 TTQAST-SAPRHQPAATFTTATSTAHPVKQRGQ--TAAQASQLGQAQPQPPP 1572
Score = 51 (23.0 bits), Expect = 5.4e-53, Sum P(5) = 5.4e-53
Identities = 35/176 (19%), Positives = 56/176 (31%)
Query: 272 NIDL-SQPANASLIAQLIPIMQSRIVANHKANESNMGAP--SSPVPVSKQQVTSPTI--A 326
N+ + S PA + Q I++S + P S+P+P QQ P I
Sbjct: 598 NVPMTSLPAALQISQQQPQIVESPTQPQIQVKIQPQSVPLTSAPLPAPLQQQVPPAIHVQ 657
Query: 327 GENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQV 386
G+ + RP+ P +A ++ S +
Sbjct: 658 GQTPNQVSQPQATIQQQAVTLTRPSADPVQTSQRLTANILPPTSSVAPAAISGTAPPSTY 717
Query: 387 P---SRQPVAIGNGLPPI--HPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQL 437
P +R A L PI PP ++ P P +NSQ + Q+
Sbjct: 718 PVQTNRTSPATNKSLSPIASKPPGLAVAAAPKSQSPAQNAAVLPQDNSQDKLAEQV 773
Score = 47 (21.6 bits), Expect = 6.2e-51, Sum P(5) = 6.2e-51
Identities = 26/126 (20%), Positives = 50/126 (39%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRK--KLL 825
E + + I A R+ F E Q VE+ Q++ +K + LK IS+ K K
Sbjct: 859 EEQNKLRRIAASIAREIEYFWSNIE-QVVEIKLQIEFQEKRKKALNLKKISRKGKDAKPS 917
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREML-LEQQ 884
E + I++ + K + +D++ + K ++ E+ L ++
Sbjct: 918 EDLFPIKEGEMGSSSSGRKRKASTSLTDEEVEDEEETIEEQEAKEGNINHQTELSNLVKE 977
Query: 885 TSIPGD 890
+P D
Sbjct: 978 AELPLD 983
Score = 45 (20.9 bits), Expect = 2.2e-52, Sum P(5) = 2.2e-52
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 391 PVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQLNRSSPQSAIP 447
P + L P++ P TSL + Q P S P Q+Q Q +S P ++ P
Sbjct: 587 PPQLPGRLQPVNVPMTSLPAALQISQQQPQIVES-PTQPQIQVKIQ-PQSVPLTSAP 641
Score = 44 (20.5 bits), Expect = 2.8e-52, Sum P(5) = 2.8e-52
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 379 VHGRDNQVPSRQPVAIGNGLPP 400
V G+D Q + PVAI LPP
Sbjct: 445 VTGKDGQTGT--PVAIATQLPP 464
Score = 41 (19.5 bits), Expect = 2.9e-53, Sum P(4) = 2.9e-53
Identities = 17/90 (18%), Positives = 33/90 (36%)
Query: 353 SPSPLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTP 412
SP+ + +++ +QQF + R + + N + P+ + +TP
Sbjct: 35 SPAASFAPSASPSAPQSPSYQIQQF-IMSRSPVAGQNVNITLQN-VGPVASGNQQITLTP 92
Query: 413 GVDQPLPVKNSSGPENSQMQYLRQLNRSSP 442
LP+ N + P R+ SP
Sbjct: 93 -----LPIPNPTSPSFQFSPQQRRFEHGSP 117
Score = 41 (19.5 bits), Expect = 9.3e-52, Sum P(5) = 9.3e-52
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 578 VSPVGQGMSAVTKEPAPVVVP 598
V PV G +T P P+ P
Sbjct: 78 VGPVASGNQQITLTPLPIPNP 98
Score = 39 (18.8 bits), Expect = 5.4e-53, Sum P(5) = 5.4e-53
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 209 PQQQVSDQKGEPKPPSQQTL 228
PQQ S +P P QTL
Sbjct: 127 PQQVQSQSPTQPSPVPVQTL 146
Score = 39 (18.8 bits), Expect = 1.5e-33, Sum P(5) = 1.5e-33
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1822 ERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNS-LRHDQSEPSSKSR 1877
ER C+ P++ D + + P+Q+ +D+ + G N L PS R
Sbjct: 1759 ERRCSRAPVYGSDLLSICLLTGERRPSQV-SDSSWRWAGFVNCCLSSASGSPSDPLR 1814
Score = 37 (18.1 bits), Expect = 9.3e-52, Sum P(5) = 9.3e-52
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 422 NSSGPENSQMQYLRQLNRS 440
+ +GP+N+Q RQL RS
Sbjct: 3 HGNGPQNAQ----RQLQRS 17
Score = 37 (18.1 bits), Expect = 2.3e-33, Sum P(5) = 2.3e-33
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 1514 RFDQRTTHEERRMTLETLLHDE 1535
R D+ HE+R+ +++ D+
Sbjct: 1946 RIDEYANHEQRQELMKSFNRDK 1967
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 372 (136.0 bits), Expect = 3.4e-53, Sum P(2) = 3.4e-53
Identities = 116/336 (34%), Positives = 166/336 (49%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
L+ YQ+VG+ ++L LY + G ILADEMGLGKT+Q + + L + GPHL++ P
Sbjct: 213 LKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPA 272
Query: 1060 AVLVNWKSELHKWLPSVSCIYYVGA-KDQRSRLFSQEVAALK---FNVLVTTYE-FIMY- 1113
+VL NW+ EL KW PS + + Y GA + SR + A K FNVL+ Y F +
Sbjct: 273 SVLENWERELRKWCPSFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLVCYSLFERHS 332
Query: 1114 -----DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGTPLQNDXX 1166
DR L + W +++DEA +KD+ S ++L +RL+LTGTPLQND
Sbjct: 333 EQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLH 392
Query: 1167 XXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226
P++F +K NA+D TE +I R+ IL P
Sbjct: 393 ELWSLLEFMLPDIFTTENV-------DLKK---LLNAED----TE----LITRMKSILGP 434
Query: 1227 FMLRRRVEDVEGSLPPK---VSIVL--RCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ 1281
F+LRR DV L PK V VL R + A + AI ++ +A R+ K
Sbjct: 435 FILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEY-RAASQARLVKLSSK---S 490
Query: 1282 KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD 1317
N + +A + ++N + RK NHPLL +SD
Sbjct: 491 LNSLAKALPKRQISNYFTQFRKIANHPLLIRRIYSD 526
Score = 271 (100.5 bits), Expect = 3.4e-53, Sum P(2) = 3.4e-53
Identities = 59/128 (46%), Positives = 84/128 (65%)
Query: 1333 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392
L +L ++++GHRVL+FS T +LDILE L + YRR+DG+T + DR++ + FN+
Sbjct: 593 LAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNN 652
Query: 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452
D F LLS RA G+GLNL ADTVII+D D NP+ + QA R HRIGQ + V + +
Sbjct: 653 -DKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRL 711
Query: 1453 --EAVVDK 1458
++ VD+
Sbjct: 712 VTKSTVDE 719
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 415 (151.1 bits), Expect = 5.7e-53, Sum P(3) = 5.7e-53
Identities = 110/323 (34%), Positives = 166/323 (51%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
+L+DYQ G+ W+ LY NK++ ILAD+MGLGKT QV++ AYL + GPHL++VP+
Sbjct: 571 SLKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLKQIN-EPGPHLVVVPS 629
Query: 1060 AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFS-QEVAALKFNVLVTTYEFIM---YDR 1115
+ L NW E K+ P++ Y G+ +R L E A K++V+VTTY YD
Sbjct: 630 STLENWLREFQKFAPALKIEPYYGSLQEREELRDILERNAGKYDVIVTTYNLAAGNKYDV 689
Query: 1116 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 1175
S L ++ ++ DE +K+ S L + R RLLLTGTPLQN+
Sbjct: 690 SFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFI 749
Query: 1176 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235
P +F ++K D + K + + L E I R +++PF+LRRR +
Sbjct: 750 MPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQEA----ITRAKTMMKPFILRRRKDQ 805
Query: 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 1295
V LPPK + + C ++AIQ IYD + L + + K+ ++K+ + +
Sbjct: 806 VLKHLPPKHTHIQYCELNAIQKKIYDK-EIQIVLEHKRMIKDGELPKDAKEKSKLQSSSS 864
Query: 1296 -NRCMELRKTCNHPLLNYPYFSD 1317
N M LRK HPLL ++D
Sbjct: 865 KNLIMALRKASLHPLLFRNIYND 887
Score = 239 (89.2 bits), Expect = 5.7e-53, Sum P(3) = 5.7e-53
Identities = 66/170 (38%), Positives = 98/170 (57%)
Query: 1300 ELRKTC-NHPLLNYPYFSDLSKDFLVKSCGKLWILDRIL--IKLQRTGHRVLLFSTMTKL 1356
EL K C N P Y L D ++S GK+ L ++L I + + +VL+FS T++
Sbjct: 923 ELHKLCCNFPNTLSKY--QLHNDEWMQS-GKIDALKKLLKTIIVDKQ-EKVLIFSLFTQV 978
Query: 1357 LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1416
LDILE L + R+DG+T + DR+ ++D D D IF+LS +A G G+NL A
Sbjct: 979 LDILEMVLSTLDYKFLRLDGSTQVNDRQ-LLIDKFYEDKDIPIFILSTKAGGFGINLVCA 1037
Query: 1417 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQ 1463
+ VII+D NP ++ QA RAHR+GQ +EV + I +++ +KI HQ
Sbjct: 1038 NNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKI--HQ 1085
Score = 45 (20.9 bits), Expect = 5.7e-53, Sum P(3) = 5.7e-53
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 533 RVSGKIAEDQLRHL-ESNGKDAQAVSSSNVQSLPKEEAYA---GDDKAAVSPVGQGMSAV 588
+V G +E L +L E + D ++ N S A A +K V +G
Sbjct: 391 QVEGDNSELDLMNLGEDDDDDNDDGNNDNNNSNNNNTAGADATSKEKEDTKAVVEGFDET 450
Query: 589 TKEPAPVVVPGKEEQQ 604
+ EP P P E++
Sbjct: 451 SAEPTPAPAPAPVERE 466
Score = 45 (20.9 bits), Expect = 9.1e-33, Sum P(3) = 9.1e-33
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 1533 HDEERYQETVHDVPSLQEVNRMIARSEDEVE 1563
HD+ + + H V +EVN ++D +E
Sbjct: 1050 HDDRQAADRAHRVGQTKEVNITTLITKDSIE 1080
Score = 37 (18.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1016 YNNKLNGILADEMGLGKTVQVMA 1038
YN K + AD+ +GK+ + A
Sbjct: 205 YNKKRRLVRADQHPIGKSYESSA 227
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 580 (209.2 bits), Expect = 7.6e-53, P = 7.6e-53
Identities = 165/481 (34%), Positives = 249/481 (51%)
Query: 985 VNERVMRQPSMLR-AGT-LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1042
+N++ QP L+ AG L +QI G+ W+ + + ILADEMGLGKT+Q + +
Sbjct: 249 LNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYS 308
Query: 1043 LMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102
L + GP LI VP + L NW+ EL W P + C+ YVG K R+ + E++ +
Sbjct: 309 LFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVT 368
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEA-QRMKDRESVLARDLDRYRCQRRLLLTGTPL 1161
Y + + +++I +D A D +++ + R R + +
Sbjct: 369 TKTMRENQTQY-KFNVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFR---I 424
Query: 1162 QNDXXXXXXXXXXXXPEVFDNRKAFH--DWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219
+ P + + FH ++ S + T A+ + E++V R
Sbjct: 425 LSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSKEEQV---KR 481
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH+ILEP MLRR DV S+PPK ++R +S++Q Y I ++ K
Sbjct: 482 LHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILT--------KNFKAL 533
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD---LSKD------FLVKSCGKL 1330
QK +V LN M+LRK CNHP L +P ++ +S L K+ GKL
Sbjct: 534 NQKGG---GRVCSLLNIM-MDLRKCCNHPYL-FPSAAEEATISPSGLYEMSSLTKASGKL 588
Query: 1331 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390
+L ++L +L+ HRVLLFS MTK+L++LE +L+ Y RIDG+ + R+ AI F
Sbjct: 589 DLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRF 648
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
N S+ F+FLLS RA G G+NL +ADTVII+D D NP N+ QA +RAHR+GQK++V +I
Sbjct: 649 NDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKV-MI 707
Query: 1451 Y 1451
Y
Sbjct: 708 Y 708
>ZFIN|ZDB-GENE-081104-186 [details] [associations]
symbol:si:ch211-227i14.2 "si:ch211-227i14.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS51194 SMART:SM00717 ZFIN:ZDB-GENE-081104-186
GO:GO:0005524 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:AL929056
EMBL:CABZ01053382 EMBL:CABZ01053383 IPI:IPI00890401
Ensembl:ENSDART00000111655 Bgee:F1Q5V1 Uniprot:F1Q5V1
Length = 3108
Score = 450 (163.5 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
Identities = 99/269 (36%), Positives = 153/269 (56%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS+L G+LR+YQ VG++W+ SL+ LNGILADE GLGKTVQ +A A+L +G +GP
Sbjct: 1054 PSLLH-GSLREYQQVGVEWLASLHRKNLNGILADETGLGKTVQTVAYFAHLACNQGIWGP 1112
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HL++V L+NW+ E +W P + + Y+G++ QR S+ F+V VT+Y+ ++
Sbjct: 1113 HLVVVRTCKLLNWEMEFKRWCPGLKILLYLGSRRQRRYKRSRWCEPNNFHVCVTSYKLLL 1172
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D+S + WK++++DE Q +K+ + + Q+R+LL TPLQN
Sbjct: 1173 KDQSHFLRRRWKHLVLDEVQLIKNMTEKHWETIFNIKSQQRILLINTPLQNTLKELWTMI 1232
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P + H + + P K G N D K VI RLH++++PF+LRR
Sbjct: 1233 HFLLPGIT------HPYLNFPI-KPGTDQNQD----YCHKLVI---RLHRMIQPFILRRS 1278
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
DVE +P K +L+CR+S Q ++Y+
Sbjct: 1279 KRDVEKQMPKKYEHILKCRLSKRQKSMYE 1307
Score = 225 (84.3 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
Identities = 58/184 (31%), Positives = 95/184 (51%)
Query: 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 1359
E+RK P+ ++P L D S GKL L +L KL RVL+F+ M +LDI
Sbjct: 1845 EIRKLACPPVASFPDAHMLEMD----SAGKLEALSILLQKLSAENRRVLIFTQMASMLDI 1900
Query: 1360 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419
LE +L R L Y R+D + SLE+R+ + +N + F +L+ R ++ ADT+
Sbjct: 1901 LESFLDHRHLTYVRLDESLSLEERQEQVKKYN-RNRQIFCTILTNRCCSAMGHVFDADTI 1959
Query: 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDD 1479
+ YD D NP + + +IG+ +++ + +E S + E++L GT DL +
Sbjct: 1960 VFYDTDLNPSMDMRTQEWCDKIGRSKDIHIYRLE------SGNSIEEKLLKNGTKDLIRE 2013
Query: 1480 LAGK 1483
+A +
Sbjct: 2014 VAAQ 2017
Score = 129 (50.5 bits), Expect = 8.3e-19, Sum P(7) = 8.3e-19
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
++ RLH++++PF+LRR DVE +P K +L+CR+S Q ++Y+ + + P
Sbjct: 1262 LVIRLHRMIQPFILRRSKRDVEKQMPKKYEHILKCRLSKRQKSMYE------DILIQPSA 1315
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
++ K + +V + L M+L+K CNHP L P
Sbjct: 1316 QE--ALKTGHF-VRVLEVL----MQLQKICNHPDLIQP 1346
Score = 55 (24.4 bits), Expect = 2.3e-52, Sum P(6) = 2.3e-52
Identities = 26/107 (24%), Positives = 42/107 (39%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ--LKSISQWRKKLLE 826
+ Q QE + K ++ EL ++ Q S + + Q + SQW L E
Sbjct: 732 IGQNSQESSQDKQAEQAKLESHVHQRIAELRKEGQWSASRLPKLQESCRPKSQWDYLLEE 791
Query: 827 AHWAIRD-ARTAR-NRGVAKYHERILREF--SKRKDDDRNKRMEALK 869
W D A+ R AK R + K+K +R K+ E ++
Sbjct: 792 MQWMAADFAQERRWKMAAAKKLVRTCARYHVEKKKMGEREKKEEEMR 838
Score = 51 (23.0 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 1764 ELEEGEIAVSGDSHMDHQQSGSWTH-DRDEGEDEQVLQ 1800
E EEG++ V D D +++G D +EG E+ Q
Sbjct: 2083 EEEEGQVEVDEDVKSDKEKAGGPVEMDIEEGAREETSQ 2120
Score = 50 (22.7 bits), Expect = 8.9e-11, Sum P(4) = 8.9e-11
Identities = 38/160 (23%), Positives = 64/160 (40%)
Query: 279 ANASLI-AQLIPIMQSRIVANHKANESNMGAPS-SPVPVSKQQVTSPTIAGENSPHANXX 336
A AS+I P++ I N + +MG P + +P Q SP + + S +
Sbjct: 1495 AQASIINCSSGPLLTGAI-PNPPSIPLSMGVPGVTTMPAVTPQAPSP-VPLQPSLVSQRL 1552
Query: 337 XXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXISLQ--QFSV-HGRDNQVPSRQPVA 393
+ V + L + A + Q +F++ + Q+ + QP+
Sbjct: 1553 VLSSQAQARLPSGDVVKVAQLVGQSRIAQPETPVTLQFQGNKFTLSQSQLRQLTTGQPLQ 1612
Query: 394 I-GNGL-----P--PIHPPQTSLNMTPGVDQPLPVKNSSG 425
+ GN L P P+ PQ + P V Q +P +NSSG
Sbjct: 1613 LQGNILQIVSAPGQPLLRPQGPPMVMPTVPQAVPAQNSSG 1652
Score = 49 (22.3 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 785 RKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWA 830
+K VR C R VE +++ +K E +L+ I+ + ++ W+
Sbjct: 811 KKLVRTCARYHVE-KKKMGEREKKEEEMRLRHIASTIARGVDYFWS 855
Score = 48 (22.0 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 854 SKRKDDDRNKRMEALKNNDVE-RYREMLLEQQTSIPGDAAERYAVLSSFLTQTE 906
SKR+ KR + +DVE E +E+Q + AA++ A L+ + E
Sbjct: 897 SKRETGPSRKRKSSTSLSDVEVEDEESTIEEQEATEA-AADQKAELAELTKEAE 949
Score = 46 (21.3 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 1242 PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301
P +S V + +++A + + + G + ++ + Q QAK+ ++ R EL
Sbjct: 703 PSLSPVAQSKLTATNGTVGLKLSSLGQSSIG-QNSQESSQDKQAEQAKLESHVHQRIAEL 761
Query: 1302 RK 1303
RK
Sbjct: 762 RK 763
Score = 44 (20.5 bits), Expect = 1.5e-52, Sum P(6) = 1.5e-52
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 379 VHGRDNQVPSRQPVAIGNGLPP 400
V G+D Q + PVAI LPP
Sbjct: 418 VTGKDGQTVT--PVAIATQLPP 437
Score = 44 (20.5 bits), Expect = 2.3e-52, Sum P(6) = 2.3e-52
Identities = 44/175 (25%), Positives = 58/175 (33%)
Query: 198 QFGRGEKQMEQPQQQVSDQKGEP--------KPPSQQTLGGQGMAANIIRPMQAAQHQQS 249
Q G G+KQ QQQ KG P PP Q L G+ A + P+ AQ Q
Sbjct: 533 QIG-GQKQN---QQQYDPSKGPPVQNAASLHTPPPQ--LPGRLPQAGL--PLSLAQGQAM 584
Query: 250 IXXXXXXXXXXXXXXXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAP 309
+ + P +A L AQL MQS + H +
Sbjct: 585 VVDQQATVTGGQLQVKVQGAGAVLAPVNP-HAQLQAQLQQ-MQSGL---HLQMQQQQQMQ 639
Query: 310 SSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAA 364
S + + VT E S A + P SPS L S ++A
Sbjct: 640 QSVMQPGQATVTLLRPGAETSQAAQRLMSNSLSSPVISSVPLTSPSSLPSPLTSA 694
Score = 40 (19.1 bits), Expect = 2.3e-52, Sum P(6) = 2.3e-52
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 384 NQVPSRQPVAIGNGLP--PIHPPQTSLNMTPGVDQPLPVKNSS 424
+ VP P ++ + L P+ P T +++P L N +
Sbjct: 677 SSVPLTSPSSLPSPLTSAPVRTPNTGPSLSPVAQSKLTATNGT 719
Score = 39 (18.8 bits), Expect = 9.9e-32, Sum P(7) = 9.9e-32
Identities = 16/75 (21%), Positives = 35/75 (46%)
Query: 1407 AGRGLNLQSADTVIIYDPDPNPKNE-EQAVARAH--RIGQ-KREVKVIYMEAVVDKISSH 1462
AG G + + ++ +P+P VAR + + ++E + E V+ +
Sbjct: 2039 AGSG---EKVEEFVVLHQEPSPSESIPPHVARPYIQALNTIRQETQYEEEEGQVE-VDED 2094
Query: 1463 QKEDELRSGGTVDLE 1477
K D+ ++GG V+++
Sbjct: 2095 VKSDKEKAGGPVEMD 2109
Score = 38 (18.4 bits), Expect = 2.7e-51, Sum P(7) = 2.7e-51
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 209 PQQQV--SDQKGEPKPPSQQTLGGQ 231
P QQ+ + Q G P P +GGQ
Sbjct: 513 PLQQLMPTAQGGMPPTPQTVQIGGQ 537
Score = 37 (18.1 bits), Expect = 5.4e-51, Sum P(7) = 5.4e-51
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 305 NMGAPSSPVPVSKQQVTSPTI 325
N G SPV SK T+ T+
Sbjct: 700 NTGPSLSPVAQSKLTATNGTV 720
Score = 37 (18.1 bits), Expect = 1.7e-50, Sum P(7) = 1.7e-50
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 1477 EDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1536
ED+ K+R + G Q+ K++ +++I D + E +E + +E+
Sbjct: 2149 EDEQVVKERMETTKRGWELQLQQKLKVEKEEQMIQEDEEDLLSYTREDAYNMEYVFENED 2208
Query: 1537 RYQE 1540
E
Sbjct: 2209 GQTE 2212
Score = 37 (18.1 bits), Expect = 4.6e-18, Sum P(5) = 4.6e-18
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 398 LPPIHPPQTSLNMTPGVDQ 416
LP I P + + PG DQ
Sbjct: 1236 LPGITHPYLNFPIKPGTDQ 1254
>UNIPROTKB|I3L7Y4 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS51194 SMART:SM00717 GO:GO:0005524
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 EMBL:CU469318 EMBL:CU469455
Ensembl:ENSSSCT00000027939 Uniprot:I3L7Y4
Length = 2789
Score = 426 (155.0 bits), Expect = 1.7e-52, Sum P(6) = 1.7e-52
Identities = 101/277 (36%), Positives = 146/277 (52%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P++L G LRDYQ +GL W+ LY LNGILADE GLGKTVQ++A A+L +GN+GP
Sbjct: 1074 PALLY-GALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGP 1132
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HL+IV + ++ W+ EL +W P + + YVG+ + + FN+ +T+Y+
Sbjct: 1133 HLVIVRSCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWSEPNSFNICITSYKQFF 1192
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
+ + WK ++IDE QR+K + + Q+RLLL PL N
Sbjct: 1193 RGHASFPRARWKCLVIDEMQRVKGMTERHWEAVFALQSQQRLLLIDAPLHNTFLELWTMV 1252
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P + +R H F + P+ D + KV+I RLH++ +PF+LRR
Sbjct: 1253 HFLIPGI--SRPYLH------FPLKAPSEENQDYY----HKVVI--RLHRVTQPFILRRT 1298
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGT 1268
DVE L K VL+CR+S Q A+Y D I GT
Sbjct: 1299 KRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGT 1335
Score = 227 (85.0 bits), Expect = 1.7e-52, Sum P(6) = 1.7e-52
Identities = 80/262 (30%), Positives = 127/262 (48%)
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GKL L +L KL+ G RVL+ S M +LDILE +L + L Y RID + E R+ +
Sbjct: 1811 GKLEALAVLLQKLRSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELM 1870
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN D F LLS + G++L AD V+ YD D NP + +A RIG++R+V
Sbjct: 1871 RSFN-RDRRIFCALLSTHSRTTGVSLVEADAVVFYDNDLNPVMDAKAQEWCDRIGRRRDV 1929
Query: 1448 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA--GKDRYIGSI-EGLIRNNIQQYK-I 1503
+ + +S + E++L GT DL ++A G D + + + I+ + Y +
Sbjct: 1930 HIYRL------VSGNSIEEKLLKNGTKDLIREVAAQGNDYSMAFLTQRTIQELFEVYSPM 1983
Query: 1504 DMADEVINAGRFDQRTTHEERRMTLETLLHDEER-YQETVHDVPSLQE-VNRMIARSEDE 1561
D A + A F +E +T ET+ R + E + + L+E + + E
Sbjct: 1984 DDAGFPVKAEEFV--VLSQEPSVT-ETIAPKIARPFIEALKSIEYLEEDAQKPFEEAVPE 2040
Query: 1562 VELFD--QMDEEFGWIEEMTRY 1581
V D + +EE +EE+ +
Sbjct: 2041 VSDSDSSRWNEEPSQLEELADF 2062
Score = 116 (45.9 bits), Expect = 2.0e-20, Sum P(6) = 2.0e-20
Identities = 39/108 (36%), Positives = 54/108 (50%)
Query: 1213 KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRV 1271
KV+I RLH++ +PF+LRR DVE L K VL+CR+S Q A+Y D I GT
Sbjct: 1281 KVVI--RLHRVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGT--- 1335
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS 1319
+ K+ + V L + L++ CNHP L P + S
Sbjct: 1336 ------QEALKSGHF-VDVLSIL----LRLQRICNHPGLVEPRLPESS 1372
Score = 65 (27.9 bits), Expect = 1.7e-52, Sum P(6) = 1.7e-52
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 775 EIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ----LKSISQWRKK--LLEAH 828
E +A+ ++ +++ L ++ + +R++ Q+A R K L QW E
Sbjct: 763 EQIALENQIHQRIADL-RKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERR 821
Query: 829 WAIRDARTARNRGVAKYHE--RILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTS 886
W + A+ R VA++HE ++ E K+++ +R +R+ A ++E Y +EQ
Sbjct: 822 WKVAAAKKLV-RTVARHHEEKKLREERGKKEEQNRLRRIAASTAREIE-YFWSNIEQVVE 879
Query: 887 I 887
I
Sbjct: 880 I 880
Score = 60 (26.2 bits), Expect = 7.3e-13, Sum P(4) = 7.3e-13
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 565 PKEEAYAGDDKAAVSPVGQGMSAVTKEPA-PVVVPGKEEQ 603
P A A + AVSP+ G V +PA PV P +EE+
Sbjct: 1616 PPAFAVAVPGRVAVSPLAAGEPGVASKPASPVAGPTQEEK 1655
Score = 59 (25.8 bits), Expect = 1.7e-52, Sum P(6) = 1.7e-52
Identities = 29/115 (25%), Positives = 45/115 (39%)
Query: 301 ANESNMGAPSSP-VPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGS 359
A ++ AP SP PV + SP +AG+N N + T++P PL S
Sbjct: 43 APSASPSAPQSPGYPVQQLMSRSP-VAGQN---VNIALQNVGPVVGGNPQITLAPLPLPS 98
Query: 360 TTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGV 414
TS ++F HG + + P++ + P Q S PG+
Sbjct: 99 PTSPGFQFSTQQ---RRFE-HGSPSYIQVTSPLS--QQVQTQSPTQPSPGPGPGL 147
Score = 50 (22.7 bits), Expect = 1.7e-52, Sum P(6) = 1.7e-52
Identities = 17/52 (32%), Positives = 20/52 (38%)
Query: 557 SSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVV--PGKEEQQAP 606
SSS P + G A SPV + A TK +PV PG P
Sbjct: 690 SSSTSSIAPASGSGPGPSPARASPVNRPSLATTKSLSPVTSRSPGAAVSALP 741
Score = 48 (22.0 bits), Expect = 3.5e-51, Sum P(5) = 3.5e-51
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 385 QVP--SRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPVKNSSGPENSQMQYLRQLNRSS 441
Q P S QP + + PP+ P Q P + + SGP S + +NR S
Sbjct: 660 QAPPLSAQPQTVASSRPPVDPAQPCPRPPPSSSTSSIAPASGSGPGPSPAR-ASPVNRPS 718
Score = 46 (21.3 bits), Expect = 1.5e-50, Sum P(6) = 1.5e-50
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKL 824
E + + I A R+ F E Q VE+ QV+ +K + L+ +S+ K+L
Sbjct: 851 EEQNRLRRIAASTAREIEYFWSNIE-QVVEIKLQVELEEKRKKALHLQKVSRKGKEL 906
Score = 45 (20.9 bits), Expect = 5.5e-52, Sum P(6) = 5.5e-52
Identities = 30/107 (28%), Positives = 42/107 (39%)
Query: 579 SPVGQGMSAVTKEPAP----VVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFP---- 630
+P + A +P P V +PGK + QAP S + Q V P
Sbjct: 631 APPPSQLPAPPPQPTPPALHVPMPGKAQMQAPPLSAQP-QTVASSRPPVDPAQPCPRPPP 689
Query: 631 ADRGKSVAPQV------SACDAVQVKKPAQATT-ALQP---KDVGAA 667
+ S+AP S A V +P+ ATT +L P + GAA
Sbjct: 690 SSSTSSIAPASGSGPGPSPARASPVNRPSLATTKSLSPVTSRSPGAA 736
Score = 44 (20.5 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 372 ISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPG 413
+ +Q S G N + S+ P G G P+ PP ++ + PG
Sbjct: 1586 VVMQTVSQAGALNALGSKPPAG-GPGPTPVTPPAFAVAV-PG 1625
Score = 41 (19.5 bits), Expect = 1.8e-50, Sum P(5) = 1.8e-50
Identities = 35/160 (21%), Positives = 58/160 (36%)
Query: 286 QLI-PIMQSRI-VANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXX--XXXX 341
Q++ P Q +I V + N P S +P Q T P + A
Sbjct: 608 QMVEPQPQLQIPVKTQQPNAPVPAPPPSQLPAPPPQPTPPALHVPMPGKAQMQAPPLSAQ 667
Query: 342 XXXXAKARPTVSPS---PLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGL 398
A +RP V P+ P +S+ S S R + V +R +A L
Sbjct: 668 PQTVASSRPPVDPAQPCPRPPPSSSTSSIAPASGSGPGPSP-ARASPV-NRPSLATTKSL 725
Query: 399 PPI--HPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQ 436
P+ P +++ P P +N++ P++S L +
Sbjct: 726 SPVTSRSPGAAVSALPKPQSP--AQNTAPPQDSSQDKLAE 763
Score = 37 (18.1 bits), Expect = 1.7e-52, Sum P(6) = 1.7e-52
Identities = 27/132 (20%), Positives = 48/132 (36%)
Query: 1756 SLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRH 1815
S++KR+ + G + SG S T R G + + VR
Sbjct: 2555 SINKRLASPVAPGALTTSGGSAPAQVVH---TQPRAVGSPATAASDLVSLAPTQGVRAVT 2611
Query: 1816 TVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 1875
+V + + TP+ SL+ Q+ QL T AH + LR Q + +
Sbjct: 2612 SVTASAVVTTSLTPVQTPTRSLVT-QVSQATGVQLPGKTITPAHFQL--LRQQQQQQQQQ 2668
Query: 1876 SRRNLPSRKIAN 1887
++ ++ A+
Sbjct: 2669 QQQQQQQQQAAS 2680
>UNIPROTKB|I3LPX4 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043968 "histone H2A acetylation" evidence=IEA]
[GO:0043967 "histone H4 acetylation" evidence=IEA] [GO:0035267
"NuA4 histone acetyltransferase complex" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0016607 GO:GO:0003682
GO:GO:0035267 GO:GO:0043968 GO:GO:0043967 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:MQKQKLQ EMBL:CU469318
EMBL:CU469455 Ensembl:ENSSSCT00000024610 Uniprot:I3LPX4
Length = 2865
Score = 426 (155.0 bits), Expect = 2.1e-52, Sum P(6) = 2.1e-52
Identities = 101/277 (36%), Positives = 146/277 (52%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P++L G LRDYQ +GL W+ LY LNGILADE GLGKTVQ++A A+L +GN+GP
Sbjct: 1077 PALLY-GALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGP 1135
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HL+IV + ++ W+ EL +W P + + YVG+ + + FN+ +T+Y+
Sbjct: 1136 HLVIVRSCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWSEPNSFNICITSYKQFF 1195
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
+ + WK ++IDE QR+K + + Q+RLLL PL N
Sbjct: 1196 RGHASFPRARWKCLVIDEMQRVKGMTERHWEAVFALQSQQRLLLIDAPLHNTFLELWTMV 1255
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P + +R H F + P+ D + KV+I RLH++ +PF+LRR
Sbjct: 1256 HFLIPGI--SRPYLH------FPLKAPSEENQDYY----HKVVI--RLHRVTQPFILRRT 1301
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGT 1268
DVE L K VL+CR+S Q A+Y D I GT
Sbjct: 1302 KRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGT 1338
Score = 227 (85.0 bits), Expect = 2.1e-52, Sum P(6) = 2.1e-52
Identities = 80/262 (30%), Positives = 127/262 (48%)
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GKL L +L KL+ G RVL+ S M +LDILE +L + L Y RID + E R+ +
Sbjct: 1887 GKLEALAVLLQKLRSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELM 1946
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN D F LLS + G++L AD V+ YD D NP + +A RIG++R+V
Sbjct: 1947 RSFN-RDRRIFCALLSTHSRTTGVSLVEADAVVFYDNDLNPVMDAKAQEWCDRIGRRRDV 2005
Query: 1448 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA--GKDRYIGSI-EGLIRNNIQQYK-I 1503
+ + +S + E++L GT DL ++A G D + + + I+ + Y +
Sbjct: 2006 HIYRL------VSGNSIEEKLLKNGTKDLIREVAAQGNDYSMAFLTQRTIQELFEVYSPM 2059
Query: 1504 DMADEVINAGRFDQRTTHEERRMTLETLLHDEER-YQETVHDVPSLQE-VNRMIARSEDE 1561
D A + A F +E +T ET+ R + E + + L+E + + E
Sbjct: 2060 DDAGFPVKAEEFV--VLSQEPSVT-ETIAPKIARPFIEALKSIEYLEEDAQKPFEEAVPE 2116
Query: 1562 VELFD--QMDEEFGWIEEMTRY 1581
V D + +EE +EE+ +
Sbjct: 2117 VSDSDSSRWNEEPSQLEELADF 2138
Score = 116 (45.9 bits), Expect = 2.4e-20, Sum P(6) = 2.4e-20
Identities = 39/108 (36%), Positives = 54/108 (50%)
Query: 1213 KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRV 1271
KV+I RLH++ +PF+LRR DVE L K VL+CR+S Q A+Y D I GT
Sbjct: 1284 KVVI--RLHRVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGT--- 1338
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS 1319
+ K+ + V L + L++ CNHP L P + S
Sbjct: 1339 ------QEALKSGHF-VDVLSIL----LRLQRICNHPGLVEPRLPESS 1375
Score = 65 (27.9 bits), Expect = 2.1e-52, Sum P(6) = 2.1e-52
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 775 EIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ----LKSISQWRKK--LLEAH 828
E +A+ ++ +++ L ++ + +R++ Q+A R K L QW E
Sbjct: 766 EQIALENQIHQRIADL-RKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERR 824
Query: 829 WAIRDARTARNRGVAKYHE--RILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTS 886
W + A+ R VA++HE ++ E K+++ +R +R+ A ++E Y +EQ
Sbjct: 825 WKVAAAKKLV-RTVARHHEEKKLREERGKKEEQNRLRRIAASTAREIE-YFWSNIEQVVE 882
Query: 887 I 887
I
Sbjct: 883 I 883
Score = 60 (26.2 bits), Expect = 8.1e-13, Sum P(4) = 8.1e-13
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 565 PKEEAYAGDDKAAVSPVGQGMSAVTKEPA-PVVVPGKEEQ 603
P A A + AVSP+ G V +PA PV P +EE+
Sbjct: 1692 PPAFAVAVPGRVAVSPLAAGEPGVASKPASPVAGPTQEEK 1731
Score = 59 (25.8 bits), Expect = 2.1e-52, Sum P(6) = 2.1e-52
Identities = 29/115 (25%), Positives = 45/115 (39%)
Query: 301 ANESNMGAPSSP-VPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGS 359
A ++ AP SP PV + SP +AG+N N + T++P PL S
Sbjct: 43 APSASPSAPQSPGYPVQQLMSRSP-VAGQN---VNIALQNVGPVVGGNPQITLAPLPLPS 98
Query: 360 TTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGV 414
TS ++F HG + + P++ + P Q S PG+
Sbjct: 99 PTSPGFQFSTQQ---RRFE-HGSPSYIQVTSPLS--QQVQTQSPTQPSPGPGPGL 147
Score = 50 (22.7 bits), Expect = 2.1e-52, Sum P(6) = 2.1e-52
Identities = 17/52 (32%), Positives = 20/52 (38%)
Query: 557 SSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVV--PGKEEQQAP 606
SSS P + G A SPV + A TK +PV PG P
Sbjct: 693 SSSTSSIAPASGSGPGPSPARASPVNRPSLATTKSLSPVTSRSPGAAVSALP 744
Score = 48 (22.0 bits), Expect = 1.4e-50, Sum P(6) = 1.4e-50
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 385 QVP--SRQPVAIGNGLPPIHPPQTSLNMTPGVD-QPLPVKNSSGPENSQMQYLRQLNRSS 441
Q P S QP + + PP+ P Q P + + SGP S + +NR S
Sbjct: 663 QAPPLSAQPQTVASSRPPVDPAQPCPRPPPSSSTSSIAPASGSGPGPSPAR-ASPVNRPS 721
Score = 46 (21.3 bits), Expect = 1.8e-50, Sum P(6) = 1.8e-50
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKL 824
E + + I A R+ F E Q VE+ QV+ +K + L+ +S+ K+L
Sbjct: 854 EEQNRLRRIAASTAREIEYFWSNIE-QVVEIKLQVELEEKRKKALHLQKVSRKGKEL 909
Score = 45 (20.9 bits), Expect = 6.7e-52, Sum P(6) = 6.7e-52
Identities = 30/107 (28%), Positives = 42/107 (39%)
Query: 579 SPVGQGMSAVTKEPAP----VVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFP---- 630
+P + A +P P V +PGK + QAP S + Q V P
Sbjct: 634 APPPSQLPAPPPQPTPPALHVPMPGKAQMQAPPLSAQP-QTVASSRPPVDPAQPCPRPPP 692
Query: 631 ADRGKSVAPQV------SACDAVQVKKPAQATT-ALQP---KDVGAA 667
+ S+AP S A V +P+ ATT +L P + GAA
Sbjct: 693 SSSTSSIAPASGSGPGPSPARASPVNRPSLATTKSLSPVTSRSPGAA 739
Score = 44 (20.5 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 372 ISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPG 413
+ +Q S G N + S+ P G G P+ PP ++ + PG
Sbjct: 1662 VVMQTVSQAGALNALGSKPPAG-GPGPTPVTPPAFAVAV-PG 1701
Score = 43 (20.2 bits), Expect = 8.9e-51, Sum P(6) = 8.9e-51
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 278 PAN--ASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENS 330
PAN A+ +Q P Q + A G+ P +QQ P GE S
Sbjct: 459 PANVSAAFSSQQQPFQQQALAGTLVAGA---GSTVETDPFKRQQAGPPAAMGEQS 510
Score = 41 (19.5 bits), Expect = 2.1e-50, Sum P(5) = 2.1e-50
Identities = 35/160 (21%), Positives = 58/160 (36%)
Query: 286 QLI-PIMQSRI-VANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXX--XXXX 341
Q++ P Q +I V + N P S +P Q T P + A
Sbjct: 611 QMVEPQPQLQIPVKTQQPNAPVPAPPPSQLPAPPPQPTPPALHVPMPGKAQMQAPPLSAQ 670
Query: 342 XXXXAKARPTVSPS---PLGSTTSAAXXXXXXXISLQQFSVHGRDNQVPSRQPVAIGNGL 398
A +RP V P+ P +S+ S S R + V +R +A L
Sbjct: 671 PQTVASSRPPVDPAQPCPRPPPSSSTSSIAPASGSGPGPSP-ARASPV-NRPSLATTKSL 728
Query: 399 PPI--HPPQTSLNMTPGVDQPLPVKNSSGPENSQMQYLRQ 436
P+ P +++ P P +N++ P++S L +
Sbjct: 729 SPVTSRSPGAAVSALPKPQSP--AQNTAPPQDSSQDKLAE 766
Score = 37 (18.1 bits), Expect = 2.1e-52, Sum P(6) = 2.1e-52
Identities = 27/132 (20%), Positives = 48/132 (36%)
Query: 1756 SLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRH 1815
S++KR+ + G + SG S T R G + + VR
Sbjct: 2631 SINKRLASPVAPGALTTSGGSAPAQVVH---TQPRAVGSPATAASDLVSLAPTQGVRAVT 2687
Query: 1816 TVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 1875
+V + + TP+ SL+ Q+ QL T AH + LR Q + +
Sbjct: 2688 SVTASAVVTTSLTPVQTPTRSLVT-QVSQATGVQLPGKTITPAHFQL--LRQQQQQQQQQ 2744
Query: 1876 SRRNLPSRKIAN 1887
++ ++ A+
Sbjct: 2745 QQQQQQQQQAAS 2756
>MGI|MGI:1276124 [details] [associations]
symbol:Ep400 "E1A binding protein p400" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0035267 "NuA4 histone acetyltransferase complex"
evidence=ISO] [GO:0043967 "histone H4 acetylation" evidence=ISO]
[GO:0043968 "histone H2A acetylation" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1276124 GO:GO:0005524 GO:GO:0003677
GO:GO:0016607 GO:GO:0003682 GO:GO:0035267 GO:GO:0043968
GO:GO:0043967 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 KO:K11320 CTD:57634 HOVERGEN:HBG051488
OMA:MQKQKLQ OrthoDB:EOG4RBQHQ ChiTaRS:EP400 EMBL:AB092694
EMBL:AB092695 EMBL:AC161348 EMBL:AK006168 EMBL:AK030095
EMBL:AK037693 EMBL:AK046892 EMBL:AK163566 EMBL:AK164049
EMBL:AK122517 EMBL:BC022153 EMBL:BC085511 IPI:IPI00229659
IPI:IPI00404291 IPI:IPI00480329 IPI:IPI00720144 IPI:IPI01008391
RefSeq:NP_083613.2 RefSeq:NP_775089.1 UniGene:Mm.270487
ProteinModelPortal:Q8CHI8 IntAct:Q8CHI8 STRING:Q8CHI8
PhosphoSite:Q8CHI8 PaxDb:Q8CHI8 PRIDE:Q8CHI8
Ensembl:ENSMUST00000041558 Ensembl:ENSMUST00000112435
Ensembl:ENSMUST00000112436 GeneID:75560 KEGG:mmu:75560
UCSC:uc008yrf.1 UCSC:uc008yrg.1 UCSC:uc008yrh.1 InParanoid:Q8CHI8
Bgee:Q8CHI8 CleanEx:MM_EP400 Genevestigator:Q8CHI8
GermOnline:ENSMUSG00000029505 Uniprot:Q8CHI8
Length = 3072
Score = 420 (152.9 bits), Expect = 6.1e-52, Sum P(5) = 6.1e-52
Identities = 95/269 (35%), Positives = 147/269 (54%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS+L G LRDYQ +GL W+ LY LNGILADE GLGKTVQ++A A+L +GN+GP
Sbjct: 1083 PSLLY-GALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGP 1141
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HL+++ + ++ W+ EL +W P + + YVG+ + + F++ +T+Y+
Sbjct: 1142 HLVVMRSCNILKWELELKRWCPGLKTLSYVGSHRELKAKRQEWTEPNNFHICITSYKQFF 1201
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
+ S+V WK +++DE QR+K + + + Q+RLLL PL N
Sbjct: 1202 RGYTAFSRVHWKCLVVDEMQRVKGMTERHWEAIFKLQSQQRLLLIDVPLHNTFLELWTMV 1261
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P + +R + S P + P D + K++I RLH++ +PF+LRR
Sbjct: 1262 HFLIPGI--SRP----YLSFPLK--APNEENQDYY----HKMVI--RLHRVTQPFILRRT 1307
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
DVE L K VL+CR+S+ Q A+Y+
Sbjct: 1308 KRDVEKQLTRKYEHVLKCRLSSRQKALYE 1336
Score = 227 (85.0 bits), Expect = 6.1e-52, Sum P(5) = 6.1e-52
Identities = 64/175 (36%), Positives = 93/175 (53%)
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GKL L +L KL+ G RVL+ S M +LDILE +L + L Y RID + E R+ +
Sbjct: 1814 GKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELM 1873
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN D F LLS + G+NL ADTV+ YD D NP + +A RIG+ +++
Sbjct: 1874 RSFN-RDRRIFCALLSTHSRATGINLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCKDI 1932
Query: 1448 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA--GKDRYIGSIEGLIRNNIQQ 1500
+ + +S + E++L GT DL ++A G D Y S+ L + IQ+
Sbjct: 1933 HIYRL------VSGNSIEEKLLKNGTKDLIREVAAQGND-Y--SMAFLTQRTIQE 1978
Score = 112 (44.5 bits), Expect = 2.8e-19, Sum P(6) = 2.8e-19
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 1213 KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1272
K++I RLH++ +PF+LRR DVE L K VL+CR+S+ Q A+Y+ + +
Sbjct: 1290 KMVI--RLHRVTQPFILRRTKRDVEKQLTRKYEHVLKCRLSSRQKALYE------DVILQ 1341
Query: 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
P ++ K+ + V L L++ CNHP L P
Sbjct: 1342 PRTQE--ALKSGHF-VSVLSVLTR----LQRICNHPGLVEP 1375
Score = 61 (26.5 bits), Expect = 6.1e-52, Sum P(5) = 6.1e-52
Identities = 26/97 (26%), Positives = 44/97 (45%)
Query: 799 MRQVQTSQKAMREKQ----LKSISQWRKK--LLEAHWAIRDARTARNRGVAKYHE--RIL 850
+R++ Q+A R K L QW E W + A+ R VA++HE ++
Sbjct: 795 LRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKLAAAKKLV-RTVARHHEEKKLR 853
Query: 851 REFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSI 887
E K+++ R +R+ A ++E Y +EQ I
Sbjct: 854 EERGKKEEQSRLRRIAATTAREIE-YFWSNIEQVVEI 889
Score = 53 (23.7 bits), Expect = 6.1e-52, Sum P(5) = 6.1e-52
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 557 SSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVV--PG-----KEEQQAPVSS 609
SSS+ +P + G A SPV + SA K +P+ PG + Q+P +
Sbjct: 699 SSSSSSLVPVSGSGPGPSPARSSPVNRPSSATNKALSPITSRSPGVAVSAPPKPQSPAQN 758
Query: 610 VKSDQE 615
S Q+
Sbjct: 759 AASSQD 764
Score = 52 (23.4 bits), Expect = 6.1e-52, Sum P(5) = 6.1e-52
Identities = 29/122 (23%), Positives = 46/122 (37%)
Query: 301 ANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGST 360
A ++ AP SP +Q ++ +AG+N N + T++P PL +
Sbjct: 42 APSASPSAPQSPGYQIQQLMSRSPVAGQN---VNITLQNVGPVVGGNQQITLAPLPLPNP 98
Query: 361 TSAAXXXXXXXISLQQFSVHGRDNQV----PSRQPVAIGNGLPPIHPP-QTSLNMTPGVD 415
TS ++F HG + + P Q V + P P QT N+ G
Sbjct: 99 TSPGFQFGAQQ---RRFE-HGSPSYIQVTSPMSQQVQTQSPTQPSPGPGQTLQNVRAGAP 154
Query: 416 QP 417
P
Sbjct: 155 GP 156
Score = 50 (22.7 bits), Expect = 1.4e-51, Sum P(4) = 1.4e-51
Identities = 30/118 (25%), Positives = 44/118 (37%)
Query: 540 EDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPV-GQGMSAVTKEPAPVVVP 598
E+Q H A + S S P+ Y + SPV GQ ++ + PVV
Sbjct: 25 EEQPAHPNLPPSPAAPFAPSASPSAPQSPGYQIQQLMSRSPVAGQNVNITLQNVGPVV-- 82
Query: 599 GKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSA--CDAVQVKKPAQ 654
G QQ ++ + G QQ F + G QV++ VQ + P Q
Sbjct: 83 GGN-QQITLAPLPLPNPTSPGFQFGAQQRRF--EHGSPSYIQVTSPMSQQVQTQSPTQ 137
Score = 47 (21.6 bits), Expect = 4.8e-51, Sum P(6) = 4.8e-51
Identities = 25/121 (20%), Positives = 40/121 (33%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIXXXXXXXXXXXX 262
E+++ QP Q P S GG G+ +P+ + H +
Sbjct: 219 ERRLSQPHAQSGGTIHHLGPQSPAAAGGTGL-----QPLASPNHITT--ASLPPQISSII 271
Query: 263 XXXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTS 322
++ + QP N SL + P ++ S G S P P S + T
Sbjct: 272 QGQLIQQQQQVLQGQPMNRSLGFERTP----GVLLPGVGGPSAFGMTSPPPPTSPSRTTM 327
Query: 323 P 323
P
Sbjct: 328 P 328
Score = 45 (20.9 bits), Expect = 4.8e-51, Sum P(6) = 4.8e-51
Identities = 17/48 (35%), Positives = 19/48 (39%)
Query: 379 VHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGP 426
V G+D Q + PVAI LPP S P Q L GP
Sbjct: 449 VTGKDGQTGT--PVAIATQLPPNVSAAFSSQQQPFQHQSLTGSLVVGP 494
Score = 42 (19.8 bits), Expect = 4.2e-49, Sum P(6) = 4.2e-49
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKK 823
E + + I A R+ F E Q VE+ QV+ +K + L+ +S+ K+
Sbjct: 860 EEQSRLRRIAATTAREIEYFWSNIE-QVVEIKLQVELEEKRKKALNLQKVSRRGKE 914
Score = 41 (19.5 bits), Expect = 3.6e-32, Sum P(6) = 3.6e-32
Identities = 19/99 (19%), Positives = 39/99 (39%)
Query: 1457 DKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD 1516
D S E+ + D + L ++Y + L +Q K ++++++ A D
Sbjct: 2052 DSDGSRYDEEPSQLEELADFMEQLTPIEKYALNYLELFHTTTEQEKERISEDLVMASMKD 2111
Query: 1517 QRTTH----EERRMTLETLLHDEERYQETVHDVPSLQEV 1551
T + +ER L+ + E T D +++ V
Sbjct: 2112 WETRNARALQEREARLQLEQEEAELLTYTREDAYTMEYV 2150
Score = 40 (19.1 bits), Expect = 2.6e-10, Sum P(4) = 2.6e-10
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 575 KAAVSPVGQGMSAVTKEPA-PVVVPGKEEQ 603
+ AVS + G + +PA P P +EE+
Sbjct: 1631 RVAVSAMAVGEPGLASKPASPAAGPTQEEK 1660
Score = 39 (18.8 bits), Expect = 5.7e-32, Sum P(6) = 5.7e-32
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 1318 LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377
+S+D ++ S K W R LQ R+ L +LL E + VY DG
Sbjct: 2100 ISEDLVMASM-KDWET-RNARALQEREARLQLEQEEAELLTYTREDAYTMEYVYEDADGQ 2157
Query: 1378 TSL 1380
T +
Sbjct: 2158 TEV 2160
Score = 39 (18.8 bits), Expect = 4.1e-17, Sum P(6) = 4.1e-17
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 769 VDQQQQEIMAMPDRQYRKFVRLCERQRVELM 799
VD+ Q+ + M +R + +L +QR+ L+
Sbjct: 1217 VDEMQR-VKGMTERHWEAIFKLQSQQRLLLI 1246
Score = 37 (18.1 bits), Expect = 6.4e-17, Sum P(6) = 6.4e-17
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
DY + +QWM + + + LA L +TV
Sbjct: 812 DYLLEEMQWMATDFAQERRWKLAAAKKLVRTV 843
>MGI|MGI:2444036 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
Pfam:PF00176 MGI:MGI:2444036 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AC136146 EMBL:AC122417 IPI:IPI00988884
ProteinModelPortal:E9Q9V7 SMR:E9Q9V7 Ensembl:ENSMUST00000066582
OMA:VIQDHQA Bgee:E9Q9V7 Uniprot:E9Q9V7
Length = 936
Score = 571 (206.1 bits), Expect = 6.4e-52, Sum P(2) = 6.4e-52
Identities = 116/278 (41%), Positives = 169/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR G LR+YQ +GL W++++Y KLNGILADEMGLGKT+Q ++L+A+L KGN+GP
Sbjct: 603 PLLLR-GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 661
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ EL +W PS + Y GA+ +R F+V +T+Y+ ++
Sbjct: 662 HLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 721
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + +W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN
Sbjct: 722 QDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLM 781
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + + + E ++ RLH++L PF+LRR
Sbjct: 782 HFLMPHVFQSHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRV 833
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 1270
DVE +P K V+RCR+S Q +YD A T +
Sbjct: 834 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK 871
Score = 137 (53.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 817 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 870
Query: 1276 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313
K + + ++ N M+LRK CNHP L P
Sbjct: 871 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 901
Score = 54 (24.1 bits), Expect = 6.4e-52, Sum P(2) = 6.4e-52
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
+Q+Q+E A + Q K R+ ++ + +K ++ KQ + + RKK L+ H
Sbjct: 156 EQRQKEERARREEQ-AKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLH 213
Score = 43 (20.2 bits), Expect = 9.2e-51, Sum P(2) = 9.2e-51
Identities = 26/104 (25%), Positives = 37/104 (35%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
Q R+ K + HL+ + S QSL + A KA SP SA +
Sbjct: 199 QSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPPA---SSKAGSSPCLGSSSAASS 255
Query: 591 EPAPVVVPGKEEQQ-APVSSVKSDQEVECGLLRTQQQSDFPADR 633
P PV E+ P + D E + Q+ +D R
Sbjct: 256 PPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQR 299
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 578 (208.5 bits), Expect = 7.5e-52, P = 7.5e-52
Identities = 193/683 (28%), Positives = 324/683 (47%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
QPS ++ GTL YQ+ GL W+ + ILADEMGLGKTVQV++ I+ L ++
Sbjct: 547 QPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLF-YRHKCF 605
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
P L+IVP+A + NW+ EL KW P + VG++ RS + + K V+T+ +
Sbjct: 606 PVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHVSTHVLV 665
Query: 1112 MYDRSKLSKVDWKYIIIDEAQ---RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX 1168
+ S V+ + ++ + Q + D L D Q L + +++D
Sbjct: 666 I----SASNVEREISLLRKFQWKVLIVDEGQRLKND------QSSLFYYLSSVKSDFKLL 715
Query: 1169 XXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P + R+ F+ F P + ++TEK + LHQIL+PF
Sbjct: 716 LTGT----PLQNNVRELFNLLQFLNPMKINAAELEKRYSIIDTEK----VTELHQILKPF 767
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287
LRR +V + P KV +++ M+ +Q +Y I + + + +
Sbjct: 768 FLRRVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSGGQR 827
Query: 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSD--LSKDFLVKSCGKL---WILDRILI-KLQ 1341
+LNN M+LRKT HP + P D L + ++S + +++ R+L+ KL
Sbjct: 828 TT---SLNNILMQLRKTLAHPYIYSPDIEDRNLPYELAMRSLEEASCKFLILRLLVPKLI 884
Query: 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401
GHR+LLFS + LDILE++ +++ + Y R DG +S +R+SAI FN+ +S+ FL
Sbjct: 885 TRGHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFL 944
Query: 1402 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDK 1458
LS RA G G+NL SADTVII DPD NP + QA+ARAHR GQK++V V + ++V +K
Sbjct: 945 LSTRAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEK 1004
Query: 1459 ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV-INAGRFDQ 1517
I + ++ + V+ D ++ +E ++R+ + + DE I +
Sbjct: 1005 IIQNAQKKLVLDHLIVESLDQNHNSEK---DLESILRHGARALFEEAGDEPSIKYNEYSV 1061
Query: 1518 RTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEE 1577
E +T DE + + + N+ I+ + EV+ +DEE W
Sbjct: 1062 ELLISEAEKQEDTST-DESDIKSNKFGFFRVWD-NKHISSNHYEVKENVLVDEEDVWSVI 1119
Query: 1578 MTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETE---RKRGPKGK 1634
+ + ++ A ++ + T +N + I +G ++ + +T+ R G
Sbjct: 1120 LKQREK-----DAMLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDYTVNDRSSPGS 1174
Query: 1635 KYPNYKEVDDEIGEYSEASSDER 1657
+P E I ++ SD++
Sbjct: 1175 PFPIETET---ISSITDTLSDKQ 1194
>UNIPROTKB|F1MLB1 [details] [associations]
symbol:F1MLB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043968 "histone H2A acetylation" evidence=IEA]
[GO:0043967 "histone H4 acetylation" evidence=IEA] [GO:0035267
"NuA4 histone acetyltransferase complex" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0016607 GO:GO:0003682
GO:GO:0035267 GO:GO:0043968 GO:GO:0043967 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:MQKQKLQ EMBL:DAAA02044957
EMBL:DAAA02044956 IPI:IPI01018591 Ensembl:ENSBTAT00000027216
Uniprot:F1MLB1
Length = 3137
Score = 431 (156.8 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 102/280 (36%), Positives = 148/280 (52%)
Query: 990 MRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
+ P++L G LRDYQ +GL W+ LY LNGILADE GLGKTVQ++A A+L +GN
Sbjct: 1079 LNAPALLY-GALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGN 1137
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYE 1109
+GPHL+IV + ++ W+ EL +W P + + YVG+ + + FN+ +T+Y+
Sbjct: 1138 WGPHLVIVRSCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWTEPNSFNICITSYK 1197
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
+ ++V WK ++IDE QR+K + + Q+RLLL PL N
Sbjct: 1198 QFFKGFASFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDAPLHNTFLELW 1257
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P + +R H F + P D + KV+I RLH++ +PF+L
Sbjct: 1258 TMVHFLIPGI--SRPYLH------FPLKAPNEENQDYY----HKVVI--RLHRVTQPFIL 1303
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGT 1268
RR DVE L K VL+CR+S Q A+Y D I GT
Sbjct: 1304 RRTKRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGT 1343
Score = 222 (83.2 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 63/175 (36%), Positives = 93/175 (53%)
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GKL L +L KL+ G RVL+ S M +LDILE +L + L Y RID + E R+ +
Sbjct: 1897 GKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELM 1956
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN D F LLS + G++L AD V+ YD D NP + +A RIG++++V
Sbjct: 1957 RSFN-RDRRIFCALLSTHSRATGVSLVEADAVVFYDHDLNPVMDAKAQEWCDRIGRRKDV 2015
Query: 1448 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA--GKDRYIGSIEGLIRNNIQQ 1500
+ + +S + E++L GT DL ++A G D Y S+ L + IQ+
Sbjct: 2016 HIYRL------VSGNSIEEKLLKNGTKDLIREVAAQGND-Y--SMAFLTQRTIQE 2061
Score = 116 (45.9 bits), Expect = 4.2e-19, Sum P(6) = 4.2e-19
Identities = 39/108 (36%), Positives = 54/108 (50%)
Query: 1213 KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRV 1271
KV+I RLH++ +PF+LRR DVE L K VL+CR+S Q A+Y D I GT
Sbjct: 1289 KVVI--RLHRVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGT--- 1343
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS 1319
+ K+ + V L + L++ CNHP L P + S
Sbjct: 1344 ------QEALKSGHF-VDVLSIL----LRLQRICNHPGLVAPRLPESS 1380
Score = 65 (27.9 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 775 EIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ----LKSISQWRKK--LLEAH 828
E +A+ ++ +++ L ++ + +R++ Q+A R K L QW E
Sbjct: 771 EQIALENQIHQRIADL-RKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERR 829
Query: 829 WAIRDARTARNRGVAKYHE--RILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTS 886
W + A+ R VA++HE ++ E K+++ +R +R+ A ++E Y +EQ
Sbjct: 830 WKVAAAKKLV-RTVARHHEEKKLREERGKKEEQNRLRRIAASTAREIE-YFWSNIEQVVE 887
Query: 887 I 887
I
Sbjct: 888 I 888
Score = 60 (26.2 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 21/56 (37%), Positives = 26/56 (46%)
Query: 378 SVHGRDNQVPSRQPVA--IGNGLPPI--HPPQTSLNMTPGVDQPLPVKNSSGPENS 429
S+H Q+PSR P A LPP PPQ + P P+PVK P N+
Sbjct: 582 SLHTPPPQLPSRLPQAGLPAAPLPPALQFPPQPQM-AEPQTQLPVPVKTQ--PPNA 634
Score = 55 (24.4 bits), Expect = 4.0e-51, Sum P(6) = 4.0e-51
Identities = 28/119 (23%), Positives = 41/119 (34%)
Query: 307 GAPSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXX 366
G P++P+P + Q P +A P A A P P PL T
Sbjct: 598 GLPAAPLPPALQFPPQPQMA---EPQTQLPVPVKTQPPNAPA-PAPPPGPL-PTAPPQPT 652
Query: 367 XXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSG 425
I + + +P+ QP + PP+ P Q+ L P V +SG
Sbjct: 653 PPTLHIPMPG-KAQMQAPPLPA-QPQTVAPTRPPVDPTQSCLRPPPSTSTTSTVAPASG 709
Score = 52 (23.4 bits), Expect = 1.2e-11, Sum P(4) = 1.2e-11
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 575 KAAVSPVGQGMSAVTKEPA-PVVVPGKEEQ 603
+ AVSP+ G +PA PV P +EE+
Sbjct: 1712 RVAVSPLAAGEPGAASKPASPVAGPTQEEK 1741
Score = 50 (22.7 bits), Expect = 1.3e-51, Sum P(5) = 1.3e-51
Identities = 28/108 (25%), Positives = 42/108 (38%)
Query: 308 APSSP-VPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXX 366
AP SP VS+ SP +AG+N N + T++P PL S TS
Sbjct: 49 APQSPGYQVSQLMNRSP-VAGQN---VNIALQNVGPVVGGNPQITLAPLPLPSPTSPGFQ 104
Query: 367 XXXXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGV 414
++F HG + + P++ + P Q S PG+
Sbjct: 105 FSAQQ---RRFE-HGSPSYIQVTSPLS--QQVQTQSPTQPSPAPGPGL 146
Score = 46 (21.3 bits), Expect = 1.1e-49, Sum P(6) = 1.1e-49
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKL 824
E + + I A R+ F E Q VE+ QV+ +K + L+ +S+ K+L
Sbjct: 859 EEQNRLRRIAASTAREIEYFWSNIE-QVVEIKLQVELEEKRKKALNLQKVSRKGKEL 914
Score = 46 (21.3 bits), Expect = 4.7e-11, Sum P(4) = 4.7e-11
Identities = 24/84 (28%), Positives = 34/84 (40%)
Query: 577 AVSPVGQG-MSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQ-QSDFPADRG 634
A SP + A T PA P + + QAP S + GL+ T Q Q+ P+
Sbjct: 1543 APSPAHPAKLRAQTTVPASAPGPPQPQPQAP-SHPAGQSALPQGLVLTSQAQARLPSGEV 1601
Query: 635 KSVAPQVS-ACDAVQVKKPAQATT 657
+A S A +V +P T
Sbjct: 1602 VKIAQLASLAGPPSRVAQPETPVT 1625
Score = 44 (20.5 bits), Expect = 5.3e-50, Sum P(6) = 5.3e-50
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 379 VHGRDNQVPSRQPVAIGNGLPP 400
V G+D Q + PVAI LPP
Sbjct: 445 VTGKDGQTGT--PVAIATQLPP 464
Score = 42 (19.8 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 557 SSSNVQSL-PKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVV--PGKEEQQAP 606
S+S ++ P + G A SPV + A K +PV PG P
Sbjct: 697 STSTTSTVAPASGSGLGPSPARASPVNRPSLATNKSLSPVTARAPGAAVSAPP 749
Score = 40 (19.1 bits), Expect = 2.0e-51, Sum P(6) = 2.0e-51
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 576 AAVSPVGQGMSAVTKEPAP----VVVPGKEEQQAP 606
A P G + +P P + +PGK + QAP
Sbjct: 636 APAPPPGP-LPTAPPQPTPPTLHIPMPGKAQMQAP 669
Score = 40 (19.1 bits), Expect = 4.4e-49, Sum P(6) = 4.4e-49
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 711 EEGLEV-LQKKRSENLKKISGILAVNLERKRIRP 743
E+ +E+ LQ + E KK + V+ + K +RP
Sbjct: 883 EQVVEIKLQVELEEKRKKALNLQKVSRKGKELRP 916
Score = 39 (18.8 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 203 EKQMEQPQQQVSDQKGEPKPPSQQTLGGQGM 233
E+++ QP Q P S GG G+
Sbjct: 220 ERRLSQPHAQSGGTVHHLGPQSPAAAGGAGL 250
>UNIPROTKB|Q96L91 [details] [associations]
symbol:EP400 "E1A-binding protein p400" species:9606 "Homo
sapiens" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0035267
"NuA4 histone acetyltransferase complex" evidence=IDA] [GO:0043968
"histone H2A acetylation" evidence=IDA] [GO:0043967 "histone H4
acetylation" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00717 GO:GO:0005524
GO:GO:0003677 GO:GO:0016607 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0035267 GO:GO:0043968 GO:GO:0043967 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR017877 PROSITE:PS50090 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 KO:K11320 EMBL:AY044869 EMBL:AC137590 EMBL:AC137632
EMBL:AB040931 EMBL:AK096311 EMBL:BC037208 EMBL:BC064554
EMBL:AB058721 EMBL:U80743 IPI:IPI00064931 IPI:IPI00167535
IPI:IPI00783692 IPI:IPI00798339 IPI:IPI00878154 RefSeq:NP_056224.3
UniGene:Hs.595201 ProteinModelPortal:Q96L91 DIP:DIP-29915N
IntAct:Q96L91 MINT:MINT-1897496 STRING:Q96L91 PhosphoSite:Q96L91
DMDM:209572748 PaxDb:Q96L91 PRIDE:Q96L91 DNASU:57634
Ensembl:ENST00000330386 Ensembl:ENST00000332482
Ensembl:ENST00000333577 Ensembl:ENST00000389561
Ensembl:ENST00000389562 Ensembl:ENST00000537902
Ensembl:ENST00000541296 GeneID:57634 KEGG:hsa:57634 UCSC:uc001ujm.3
UCSC:uc001ujn.3 UCSC:uc021rgq.1 CTD:57634 GeneCards:GC12P132434
H-InvDB:HIX0021564 HGNC:HGNC:11958 HPA:HPA016704 MIM:606265
neXtProt:NX_Q96L91 PharmGKB:PA27808 HOVERGEN:HBG051488
InParanoid:Q96L91 OMA:MQKQKLQ OrthoDB:EOG4RBQHQ ChiTaRS:EP400
GenomeRNAi:57634 NextBio:64345 ArrayExpress:Q96L91 Bgee:Q96L91
CleanEx:HS_EP400 Genevestigator:Q96L91 GermOnline:ENSG00000183495
Uniprot:Q96L91
Length = 3159
Score = 426 (155.0 bits), Expect = 1.8e-51, Sum P(5) = 1.8e-51
Identities = 101/277 (36%), Positives = 150/277 (54%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS+L G LRDYQ +GL W+ LY LNGILADE GLGKTVQ++A A+L +GN+GP
Sbjct: 1084 PSLLY-GALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGP 1142
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HL++V + ++ W+ EL +W P + + Y+G+ + + F+V +T+Y
Sbjct: 1143 HLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQEWAEPNSFHVCITSYTQFF 1202
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
+ ++V WK ++IDE QR+K + + Q+RLLL +PL N
Sbjct: 1203 RGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDSPLHNTFLELWTMV 1262
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P + +R + S P + P+ + D + KV+I RLH++ +PF+LRR
Sbjct: 1263 HFLVPGI--SRP----YLSSPLR--APSEESQDYY----HKVVI--RLHRVTQPFILRRT 1308
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGT 1268
DVE L K VL+CR+S Q A+Y D I GT
Sbjct: 1309 KRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGT 1345
Score = 232 (86.7 bits), Expect = 1.8e-51, Sum P(5) = 1.8e-51
Identities = 71/203 (34%), Positives = 104/203 (51%)
Query: 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 1359
+LR+T LL +P + D GKL L +L KL+ G RVL+ S M +LDI
Sbjct: 1875 QLRQTTAPRLLQFPELRLVQFD-----SGKLEALAILLQKLKSEGRRVLILSQMILMLDI 1929
Query: 1360 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419
LE +L + L Y RID S E R+ + FN D F +LS + G+NL ADTV
Sbjct: 1930 LEMFLNFHYLTYVRIDENASSEQRQELMRSFN-RDRRIFCAILSTHSRTTGINLVEADTV 1988
Query: 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDD 1479
+ YD D NP + +A RIG+ +++ + + +S + E++L GT DL +
Sbjct: 1989 VFYDNDLNPVMDAKAQEWCDRIGRCKDIHIYRL------VSGNSIEEKLLKNGTKDLIRE 2042
Query: 1480 LA--GKDRYIGSIEGLIRNNIQQ 1500
+A G D Y S+ L + IQ+
Sbjct: 2043 VAAQGND-Y--SMAFLTQRTIQE 2062
Score = 118 (46.6 bits), Expect = 3.2e-19, Sum P(6) = 3.2e-19
Identities = 41/124 (33%), Positives = 60/124 (48%)
Query: 1191 SQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC 1250
S+P+ P ++ + KV+I RLH++ +PF+LRR DVE L K VL+C
Sbjct: 1270 SRPYLSS-PLRAPSEESQDYYHKVVI--RLHRVTQPFILRRTKRDVEKQLTKKYEHVLKC 1326
Query: 1251 RMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309
R+S Q A+Y D I GT + K+ + V L + L++ CNHP
Sbjct: 1327 RLSNRQKALYEDVILQPGT---------QEALKSGHF-VNVLSIL----VRLQRICNHPG 1372
Query: 1310 LNYP 1313
L P
Sbjct: 1373 LVEP 1376
Score = 56 (24.8 bits), Expect = 1.8e-51, Sum P(5) = 1.8e-51
Identities = 24/96 (25%), Positives = 43/96 (44%)
Query: 789 RLCERQRVEL--MRQVQTSQKAMREKQ----LKSISQWRKK--LLEAHWAIRDARTARNR 840
R+ E ++ L R++ Q+A R K L QW E W + A+ R
Sbjct: 784 RIAELRKAGLWSQRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLV-R 842
Query: 841 GVAKYHE--RILREFSKRKDDDRNKRMEALKNNDVE 874
V ++HE ++ E K+++ R +R+ A ++E
Sbjct: 843 TVVRHHEEKQLREERGKKEEQSRLRRIAASTAREIE 878
Score = 51 (23.0 bits), Expect = 1.8e-51, Sum P(5) = 1.8e-51
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 558 SSNVQSL-PKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVV--VPG-----KEEQQAPVSS 609
+S+ SL P + G A SPV + SA K +PV PG + Q+P +
Sbjct: 700 TSSTSSLAPVSGSGPGPSPARSSPVNRPSSATNKALSPVTSRTPGVVASAPTKPQSPAQN 759
Query: 610 VKSDQE 615
S Q+
Sbjct: 760 ATSSQD 765
Score = 51 (23.0 bits), Expect = 5.6e-51, Sum P(6) = 5.6e-51
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 376 QFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNM-TPGVDQPLPVKNSSGPE 427
Q V + VP P + +PP P Q +L++ TPG Q + SS P+
Sbjct: 627 QIPVKTQQPNVPIPAPPSSQLPIPPSQPAQLALHVPTPGKVQVQASQLSSLPQ 679
Score = 45 (20.9 bits), Expect = 7.4e-50, Sum P(6) = 7.4e-50
Identities = 25/125 (20%), Positives = 58/125 (46%)
Query: 768 EVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEA 827
E + + I A R+ F E Q VE+ +V+ +K + L+ +S+ K+L
Sbjct: 861 EEQSRLRRIAASTAREIECFWSNIE-QVVEIKLRVELEEKRKKALNLQKVSRRGKELRPK 919
Query: 828 HW-AIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNND--VERYREML-LEQ 883
+ A++++ + + G++ + + + DD + +E + N+ V+ E+ L +
Sbjct: 920 GFDALQES--SLDSGMSGRKRKASISLTDDEVDDEEETIEEEEANEGVVDHQTELSNLAK 977
Query: 884 QTSIP 888
+ +P
Sbjct: 978 EAELP 982
Score = 44 (20.5 bits), Expect = 1.8e-51, Sum P(5) = 1.8e-51
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 379 VHGRDNQVPSRQPVAIGNGLPP 400
V G+D Q + PVAI LPP
Sbjct: 449 VTGKDGQTGT--PVAIATQLPP 468
Score = 44 (20.5 bits), Expect = 6.5e-32, Sum P(6) = 6.5e-32
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 1846 YPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRL 1900
+PA+LR T +A Q+ + + LP R + + +++A L +G +
Sbjct: 1550 HPAKLRAQTTAQASTPGQPPPQPQAPSHAAGQSALPQRLVLPS-QAQARLPSGEV 1603
Score = 41 (19.5 bits), Expect = 3.6e-51, Sum P(5) = 3.6e-51
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 400 PIHPPQTSLNMTPGVDQPL-PVKNSSGPENSQMQYLRQLNRS 440
P HP N P P P + S P++ Q + +NRS
Sbjct: 29 PAHP-----NPPPSPAAPFAPSASPSAPQSPSYQIQQLMNRS 65
Score = 41 (19.5 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LPPKVS + Q A+ + A V+ + KR+
Sbjct: 466 LPPKVSAAFSSQQQPFQQALAGSLVAGAGSTVETDLFKRQ 505
Score = 38 (18.4 bits), Expect = 3.8e-50, Sum P(5) = 3.8e-50
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 404 PQTSLNMTPGVDQPLPVKNSSGPENS 429
P TS TPGV P K S +N+
Sbjct: 737 PVTS--RTPGVVASAPTKPQSPAQNA 760
Score = 38 (18.4 bits), Expect = 6.6e-49, Sum P(5) = 6.6e-49
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 598 PGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATT 657
PG E + + V D + ++ + K +A + +A+ K A+ TT
Sbjct: 1020 PGDRESRKDL--VLIDSLFIMDQFKAAERMNIGKPNAKDIADVTAVAEAILPKGSARVTT 1077
Query: 658 ALQ---PKDV-GAARKY 670
+++ P + GA R Y
Sbjct: 1078 SVKFNAPSLLYGALRDY 1094
Score = 38 (18.4 bits), Expect = 2.6e-31, Sum P(6) = 2.6e-31
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1380
LQ R+ L +LL E + VY +DG T +
Sbjct: 2204 LQEREARLRLEQEEAELLTYTREDAYSMEYVYEDVDGQTEV 2244
Score = 37 (18.1 bits), Expect = 5.6e-51, Sum P(6) = 5.6e-51
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 225 QQTLGGQGMAANIIRPMQAAQHQ 247
QQ + GMA RP HQ
Sbjct: 505 QQAMPSTGMAEQSKRPRLEVGHQ 527
Score = 37 (18.1 bits), Expect = 4.7e-10, Sum P(3) = 4.7e-10
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVK 421
Q P + VA P HPP+T+ T P++
Sbjct: 1471 QKPEGRTVAF----PSTHPPRTAAPTTASAAPQGPLR 1503
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 587 (211.7 bits), Expect = 3.2e-51, Sum P(3) = 3.2e-51
Identities = 155/470 (32%), Positives = 244/470 (51%)
Query: 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNY-----GPH 1053
YQ G++W+ L+ + GIL DEMGLGKT+Q++A +A L K NY GP
Sbjct: 510 YQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPT 569
Query: 1054 LIIVPNAVLVNWKSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
+I+ P V+ W E H W P V+ ++ G+ + ++VA +L+T+Y +I
Sbjct: 570 VIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHCH-GILITSYSYI 628
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXX 1171
+ +S+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+
Sbjct: 629 RLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSL 688
Query: 1172 XXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
P F + FS P G + NA ++T K + L + P++LRR
Sbjct: 689 FDFIFPGKLGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRR 745
Query: 1232 RVEDVEGSL--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
DV+ SL P K VL CR++ Q +Y VD + E R+ + +
Sbjct: 746 MKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNF-------VDSK-EVYRILNG---EMQ 794
Query: 1290 VYKTLNNRCMELRKTCNHPLL------NYPYFSD--LSKD-F-LVKSCGKLWILDRILIK 1339
++ L + LRK CNHP L N D L +D F K GK+ +++ +L
Sbjct: 795 IFSGL----IALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKI 850
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399
+ G RVLLFS ++LDILE +L+ ++ Y ++DGTT++ R+ I +N D+ F+
Sbjct: 851 WHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE-DTSIFV 909
Query: 1400 FLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
FLL+ R G G+NL A+ V+IYDPD NP + QA RA RIGQK++V V
Sbjct: 910 FLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTV 959
Score = 52 (23.4 bits), Expect = 3.2e-51, Sum P(3) = 3.2e-51
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 838 RNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPG 889
R+ G Y+++ LR ++K + D+ KR++ L+++ E E ++ +PG
Sbjct: 453 RDDGDEDYYKQRLRRWNKLRLQDKEKRLK-LEDDSEESDAEF--DEGFKVPG 501
Score = 43 (20.2 bits), Expect = 3.2e-51, Sum P(3) = 3.2e-51
Identities = 17/74 (22%), Positives = 30/74 (40%)
Query: 540 EDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPG 599
E +R E+ G D++ S + +EE DD+ + E P+ G
Sbjct: 356 ESDMRP-EAEG-DSEGEESEYFPT--EEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGG 411
Query: 600 KEEQQAPVSSVKSD 613
K +++ PV + D
Sbjct: 412 KRQKKVPVQEIDDD 425
Score = 40 (19.1 bits), Expect = 6.6e-51, Sum P(3) = 6.6e-51
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 568 EAYAGDD-KAAVSPVGQGMS--AVTKEPAPVVVPG------KEEQQAPVSSVKSDQ 614
E Y D K + QG + A K PAPV P K ++A V S K ++
Sbjct: 272 EKYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPNKKARVLSKKEER 327
Score = 39 (18.8 bits), Expect = 8.4e-51, Sum P(3) = 8.4e-51
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 782 RQYRKFVRLCERQRV---ELMRQVQT--SQKAMREKQLKSISQWRKKL 824
RQ K + Q ++ R++ + QK +E+QLK I+ +K L
Sbjct: 148 RQINKIIEQLSPQAATSRDINRKLDSVKRQKYNKEQQLKKITAKQKHL 195
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 579 (208.9 bits), Expect = 9.5e-51, Sum P(3) = 9.5e-51
Identities = 204/700 (29%), Positives = 331/700 (47%)
Query: 991 RQPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
RQP L + GTL YQ+ GL W+ + + ILADEMGLGKTVQ A+ Y + +G
Sbjct: 724 RQPDYLDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEG 782
Query: 1049 NY-GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNV 1103
+ GP L+ P + ++NW+ E W P + + YVG KD R+ + F+ E A++
Sbjct: 783 HSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIRGGK 842
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK-DRESVLARDLDRYRC-QRRL--LLTGT 1159
+ + + + ++ I ID+A D ++ + R + Q + +L
Sbjct: 843 KASKMKKEAAVKFHVLLTSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNY 902
Query: 1160 PLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219
PLQ+ E+F F P ++ +++ + K+ I +
Sbjct: 903 PLQHKLLLTGTPLQNNLEELFHLLN-----FLTP-ERFNNLEGFLEEFADIAKEDQI-KK 955
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH +L P MLRR DV +P K +++R +S +Q Y +I L + E R
Sbjct: 956 LHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYI-----LTRNFEALNTR 1010
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK--------DFLVKSCGKLW 1331
N + +L N M+L+K CNHP L ++ K L K+ GKL
Sbjct: 1011 GGGNQV-------SLLNVVMDLKKCCNHPYLFPTAATEAPKMPNGMYDGSALTKASGKLM 1063
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
+L ++L KL+ GHRVL+FS MTK+LD+LE++L+ Y RIDG + R+ AI FN
Sbjct: 1064 LLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAIDRFN 1123
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV-- 1449
+ + F+FLLS RA G G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V +
Sbjct: 1124 APGAPQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYR 1183
Query: 1450 -IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQYKIDMA 1506
+ +V ++I+ K+ + + V L K + ++ +++ +Q D
Sbjct: 1184 FVTKASVEERITQVAKKKMMLTHLVV--RPGLGSKAGSMSKQELDDILKFGTEQLFKDEL 1241
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLLHDEERYQET----VHDVPSLQEVNRMIARSEDEV 1562
E N D H + + L +++ ++T +++ S +V + + + EDE
Sbjct: 1242 GEGDNKEE-DSSVIHYDDKAIDRLLDRNQDATEDTELQSMNEYLSSFKVAQYVVKDEDEE 1300
Query: 1563 ELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIAN---LSKKPSKNILFGSNIGVD 1619
E + +D E EE D K LR ++ +A K+P K + + D
Sbjct: 1301 E--EDVDREIIKQEESVDPDYWEKLLRHHYEQQQEDLARHLGKGKRPRKPVNYNDCSQED 1358
Query: 1620 SGEI-ETERKRGPKGKKYP-NYKEVDDEIGEYSEASSDER 1657
G + + + Y +E D++ E SEA++ R
Sbjct: 1359 RGSRRDWQDDQSDNQSDYSVASEEGDEDFDERSEAANSRR 1398
Score = 54 (24.1 bits), Expect = 9.5e-51, Sum P(3) = 9.5e-51
Identities = 38/154 (24%), Positives = 58/154 (37%)
Query: 1754 PGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR-----DEGEDEQVLQPKIKR--K 1806
P LSK ++++E E GD + + GS D DEGE K ++ K
Sbjct: 1569 PEDLSKT--EDIKELEEKTEGDG--EKEVKGSRQEDEIIEIPDEGEKSPSSAKKEEKTDK 1624
Query: 1807 RSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT--EMKAHGESNS 1864
S + R E+ D + S D K T++ K ES+
Sbjct: 1625 ESEASSEKDGGSRENEK---DGEKEKSAESKENMSSDVKADGSDATNSGDSTKTKEESSE 1681
Query: 1865 LRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTG 1898
+ D S P+S ++ L K P+ A L+ G
Sbjct: 1682 EKMDTS-PASDEKKELKDEKDGVKPEDSAKLQNG 1714
Score = 51 (23.0 bits), Expect = 9.5e-51, Sum P(3) = 9.5e-51
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 536 GKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPV 595
G+ ED++ ES G D +S ++ G A G G + KEP P
Sbjct: 71 GEEEEDRVMRSESEGSDYAPSKKKKKRSSSSKDRKKGS--AGEKAGGSGGKSKRKEPEPE 128
Query: 596 VVPGKEEQ--QAPVSS 609
++ Q P SS
Sbjct: 129 EEDDDDDDDGQEPKSS 144
Score = 45 (20.9 bits), Expect = 8.3e-50, Sum P(3) = 8.3e-50
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 1632 KGKKYPNYKEVDDEIGEYSEASSDERNG 1659
+G+K P+ + +++ + SEASS++ G
Sbjct: 1608 EGEKSPSSAKKEEKTDKESEASSEKDGG 1635
Score = 41 (19.5 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 200 GRGEKQMEQPQQQVSDQKGEPKPP--SQQTLGGQGM 233
G+ +++ +P+++ D + + P S Q L GM
Sbjct: 118 GKSKRKEPEPEEEDDDDDDDGQEPKSSSQLLADWGM 153
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 382 (139.5 bits), Expect = 1.0e-50, Sum P(2) = 1.0e-50
Identities = 105/325 (32%), Positives = 159/325 (48%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L+DYQI+G+ W+ LY KL GILADEMGLGKT Q +A + LM+ K GPHL+I P +
Sbjct: 387 LQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLLMD-KNINGPHLVIAPAS 445
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK--FNVLVTTYEFIMY---DR 1115
+ NW E K+ P + Y G++ +R + + + + K +NV++TTY DR
Sbjct: 446 TMENWLREFAKFCPKLKIELYYGSQVEREEI-RERINSNKDSYNVMLTTYRLAATSKADR 504
Query: 1116 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 1175
L + + DE +K+R S R L R+LLTGTPLQN+
Sbjct: 505 LFLRNQKFNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFI 564
Query: 1176 XPEVFD-NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234
P VFD K+ F+ K+ P + + L ++ + R ++ PF+LRR+
Sbjct: 565 LPHVFDYGLKSLDVIFTM---KKSPESDFERALLSEQR----VSRAKMMMAPFVLRRKKS 617
Query: 1235 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR--VDPEDEKRRVQKNPIYQAKVYK 1292
V +LP K I+ C S + YD + ++ +D K + N AK
Sbjct: 618 QVLDALPKKTRIIEFCEFSEEERRRYDDFASKQSVNSLLDENVMKTNLDTNANL-AKKKS 676
Query: 1293 TLNNRCMELRKTCNHPLLNYPYFSD 1317
T ++LRK +HP+L ++ D
Sbjct: 677 TAGFVLVQLRKLADHPMLFRIHYKD 701
Score = 241 (89.9 bits), Expect = 1.0e-50, Sum P(2) = 1.0e-50
Identities = 70/185 (37%), Positives = 97/185 (52%)
Query: 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 1364
C P +N S KD K+ L ++L G RV+LFS T++LDIL+ +
Sbjct: 742 CKFPSIN----SFQLKDEPWMDATKVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVM 797
Query: 1365 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 1424
+ L + R DG+T ++ R+ I F + D +FLLS +A G G+NL A+ VI+YD
Sbjct: 798 KSLNLKFLRFDGSTQVDFRQDLIDQFYA-DESINVFLLSTKAGGFGINLACANMVILYDV 856
Query: 1425 DPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE--------DELRSGG--TV 1474
NP ++ QA RAHR+GQK+EV V Y V D I H + D SG TV
Sbjct: 857 SFNPFDDLQAEDRAHRVGQKKEVTV-YKFVVKDTIEEHIQRLANAKIALDATLSGNAETV 915
Query: 1475 DLEDD 1479
+ EDD
Sbjct: 916 EAEDD 920
Score = 48 (22.0 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 785 RKFVRLCERQRVELMRQVQTSQKAMREK 812
R+F + C + ++EL Q ++ +RE+
Sbjct: 452 REFAKFCPKLKIELYYGSQVEREEIRER 479
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 563 (203.2 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 118/277 (42%), Positives = 167/277 (60%)
Query: 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF 1046
E V R+ GT+RDYQI GL W++SL+ N ++GILADEMGLGKT+Q ++ + YL
Sbjct: 172 ETVFRESPAFIQGTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTISFLGYLRHI 231
Query: 1047 KGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVT 1106
G GPHL+IVP + L NWK E KW P V+ + GAK++R+ L ++ + F+V +T
Sbjct: 232 MGITGPHLVIVPKSTLDNWKREFGKWTPEVNVLVLQGAKEERAALIAERLVDESFDVCIT 291
Query: 1107 TYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXX 1166
+YE I+ ++S L K W+YIIIDEA R+K+ ES LA+ + + + RLL+TGTPLQN+
Sbjct: 292 SYEMILREKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIH 351
Query: 1167 XXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226
P+VF + +AF WFS EG D D ++ +LH++L P
Sbjct: 352 ELWALLNFLLPDVFGDSEAFDQWFSG----EGQ----DSD--------TVVQQLHRVLRP 395
Query: 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
F+LRR DVE SL PK + L +M+ +Q Y I
Sbjct: 396 FLLRRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKI 432
Score = 434 (157.8 bits), Expect = 1.4e-36, P = 1.4e-36
Identities = 106/255 (41%), Positives = 154/255 (60%)
Query: 1203 ADDDWL--ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
A D W E + ++ +LH++L PF+LRR DVE SL PK + L +M+ +Q Y
Sbjct: 370 AFDQWFSGEGQDSDTVVQQLHRVLRPFLLRRVKADVEKSLLPKKEVNLYLKMTEMQRTWY 429
Query: 1261 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPY 1314
I V+ + KR ++K L N M+LRK CNHP L PY
Sbjct: 430 QKILEKDIDAVNGANGKR--------ESKT--RLLNIVMQLRKCCNHPYLFEGAEPGPPY 479
Query: 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1374
+D + LV + GK+ +LD++L +L+ G RVL+FS M+++LDILE+Y +R+ Y RI
Sbjct: 480 TTD---EHLVYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRI 536
Query: 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434
DG T+ EDR +AI ++N S+ F+FLL+ RA G G+NL +AD VI++D D NP+ + QA
Sbjct: 537 DGGTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQA 596
Query: 1435 VARAHRIGQKREVKV 1449
+ RAHRIGQ ++V V
Sbjct: 597 MDRAHRIGQTKQVYV 611
>UNIPROTKB|F1P0A4 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016817 GeneTree:ENSGT00680000100002 EMBL:AADN02016239
EMBL:AADN02016240 IPI:IPI00819661 Ensembl:ENSGALT00000038610
ArrayExpress:F1P0A4 Uniprot:F1P0A4
Length = 469
Score = 538 (194.4 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 106/273 (38%), Positives = 166/273 (60%)
Query: 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
R PS ++ G LRDYQ+ GL W++SLY N +NGILADEMGLGKT+Q ++L+ Y+ ++
Sbjct: 152 RFEESPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYR 211
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTT 1107
GPH+++VP + L NW +E +W+P++ + +G KDQR+ + +++V VT+
Sbjct: 212 NIPGPHMVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTS 271
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXX 1167
YE ++ ++S K +W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 272 YEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 331
Query: 1168 XXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P+VF++ + F WF T+N D +K ++ RLH +L PF
Sbjct: 332 LWALLNFLLPDVFNSSEDFDSWFD--------TNNCLGD----QK---LVERLHMVLRPF 376
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+LRR DVE SLPPK + + +S +Q Y
Sbjct: 377 LLRRIKADVEKSLPPKKEVKIYVGLSKMQREWY 409
Score = 129 (50.5 bits), Expect = 0.00022, P = 0.00022
Identities = 36/109 (33%), Positives = 52/109 (47%)
Query: 1205 DDWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
D W +T + ++ RLH +L PF+LRR DVE SLPPK + + +S +Q +
Sbjct: 351 DSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQR---E 407
Query: 1262 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
W +D + ++ K L N M+LRK CNHP L
Sbjct: 408 WYTRILMKDIDILNSAGKLDK---------MRLLNILMQLRKCCNHPYL 447
>UNIPROTKB|E2QWV6 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 SMART:SM00717
GO:GO:0005524 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GeneTree:ENSGT00530000063427 EMBL:AAEX03014584 EMBL:AAEX03014585
EMBL:AAEX03014586 Ensembl:ENSCAFT00000010370 Uniprot:E2QWV6
Length = 3002
Score = 420 (152.9 bits), Expect = 2.3e-50, Sum P(5) = 2.3e-50
Identities = 101/277 (36%), Positives = 147/277 (53%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS+L G LRDYQ +GL W+ LY LNGILADE GLGKTVQ++A A+L +GN+GP
Sbjct: 1041 PSLLY-GVLRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGP 1099
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HL++V ++ W+ EL +W P + + YVG+ + + FNV + Y+
Sbjct: 1100 HLVVVRGCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWTEPNSFNVCIAPYKQFF 1159
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
+ +V W+ ++IDE QR++ + R Q+RLLL PL N
Sbjct: 1160 RGYASFMRVRWRCLVIDEMQRVRGMTERHWEAVFTLRSQQRLLLIDAPLHNTFLELWTMV 1219
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P + +R H P + P ++ + D+ KV+I RLH++ +PF+LRR
Sbjct: 1220 HFLIPGI--SRPYLH----LPLK--AP-NDENQDYYH---KVVI--RLHRVTQPFILRRT 1265
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGT 1268
DVE L K VL+CR+S+ Q A+Y D I GT
Sbjct: 1266 KRDVEKQLTKKYEHVLKCRLSSRQKALYEDVILQPGT 1302
Score = 221 (82.9 bits), Expect = 2.3e-50, Sum P(5) = 2.3e-50
Identities = 62/175 (35%), Positives = 93/175 (53%)
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GKL L +L KL+ G RVL+ S M +LDILE +L + L Y RID + E R+ +
Sbjct: 1771 GKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELM 1830
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN D F +LS + G++L AD V+ YD D NP + +A RIG++++V
Sbjct: 1831 RSFN-RDRRIFCAILSTHSRATGVSLVEADAVVFYDNDLNPVMDAKAQEWCERIGRRKDV 1889
Query: 1448 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA--GKDRYIGSIEGLIRNNIQQ 1500
+ + +S + E++L GT DL ++A G D Y S+ L + IQ+
Sbjct: 1890 HIYRL------VSGNSIEEKLLKNGTKDLIREVAAQGND-Y--SMAFLTQRTIQE 1935
Score = 121 (47.7 bits), Expect = 2.5e-19, Sum P(5) = 2.5e-19
Identities = 41/122 (33%), Positives = 60/122 (49%)
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
P +D+ + KV+I RLH++ +PF+LRR DVE L K VL+CR+S+ Q A
Sbjct: 1234 PLKAPNDENQDYYHKVVI--RLHRVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSSRQKA 1291
Query: 1259 IY-DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD 1317
+Y D I GT + K+ + V L + L++ CNHP L P +
Sbjct: 1292 LYEDVILQPGT---------QEALKSGHF-VDVLSIL----LRLQRICNHPGLVEPRLPE 1337
Query: 1318 LS 1319
S
Sbjct: 1338 SS 1339
Score = 60 (26.2 bits), Expect = 2.3e-50, Sum P(5) = 2.3e-50
Identities = 28/108 (25%), Positives = 53/108 (49%)
Query: 775 EIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ----LKSISQWRKK--LLEAH 828
E +A+ ++ +++ L ++ + +R++ Q+A R K L QW E
Sbjct: 730 EQIALENQIHQRIADL-RKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERR 788
Query: 829 WAIRDARTARNRGVAKYHE-RILREFSKRKDD-DRNKRMEALKNNDVE 874
W + AR R V ++HE + LRE RK++ +R +R+ A ++E
Sbjct: 789 WKMAAARKLI-RTVVRHHEEKKLREERGRKEEQNRLRRIAASTAREIE 835
Score = 58 (25.5 bits), Expect = 6.4e-12, Sum P(4) = 6.4e-12
Identities = 38/131 (29%), Positives = 50/131 (38%)
Query: 554 QAVSSSNVQSLPKEEAYAGDDKAAVSPVG-QGMSAVTKEPAPVVVPGKEEQQA-PVSSVK 611
Q +S + + + AG +PVG G AV P PG + A PV
Sbjct: 1554 QTMSQAGALNALGSKPPAGSSVPVTAPVGVPGRVAVN--PLAAGEPGMASKPASPVGG-- 1609
Query: 612 SDQEVECGLLRTQ-QQSDFPADRGKSVAPQ-----VSACDAV---QVKKPAQATTALQPK 662
QE + LLR + Q F +R S AP + C V Q P A+ + Q K
Sbjct: 1610 PTQEEKTRLLRERLDQIYFVNERRCSRAPMYGRDLLRICSVVGREQTPWPG-ASDSSQQK 1668
Query: 663 DVGAARKYHGP 673
G A Y P
Sbjct: 1669 GTGPASSYTSP 1679
Score = 53 (23.7 bits), Expect = 2.3e-50, Sum P(5) = 2.3e-50
Identities = 27/128 (21%), Positives = 45/128 (35%)
Query: 309 PSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXX 368
P PVP + + +P + A+P P P S+TS+
Sbjct: 610 PPQPVPQALHAPMPGKAQMQAAPLSTQPQTASTRPSVDLAQPCQRPPPATSSTSSIAPAS 669
Query: 369 XXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPI--HPPQTSLNMTPGVDQPLPVKNSSGP 426
+S + S R PS A L P+ P +++ P P +N++ P
Sbjct: 670 GSGLSPARVSAGNR----PSS---AANKSLSPVTSRSPGAAVSAPPKPQSP--AQNAAPP 720
Query: 427 ENSQMQYL 434
++S L
Sbjct: 721 QDSSQDKL 728
Score = 43 (20.2 bits), Expect = 2.3e-50, Sum P(5) = 2.3e-50
Identities = 35/152 (23%), Positives = 55/152 (36%)
Query: 1756 SLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRH 1815
S++KR+ + G + SG S T R G + + VR
Sbjct: 2516 SINKRLASPVAPGALTTSGGSAPAQVVH---TQPRAVGSPATATSDLVSLAPTQGVRAVT 2572
Query: 1816 TVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 1875
+V + + TP+ SL+ Q+ QL AH + + Q P
Sbjct: 2573 SVTASAVVTTSLTPVQTPTRSLVT-QVSQATGVQLPGKAITPAHFQLLRQQQQQPPPPPP 2631
Query: 1876 SRRNLPSRKIANAPKSRASLKT-GRLNCMPGH 1906
S+ +P + AP S A +K G+L P H
Sbjct: 2632 SQVQVPQIQ-GQAP-SPAQIKAVGKLT--PEH 2659
Score = 39 (18.8 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 387 PSR--QPVAIGN-------GLPPIHPPQTSLNMT 411
P+R QPV G P HPP+T+ + T
Sbjct: 1417 PNRLFQPVQYGQKPEGRTVAFPSTHPPRTAASAT 1450
Score = 38 (18.4 bits), Expect = 2.6e-32, Sum P(4) = 2.6e-32
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 1337 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
L + G +V + T+T ++++ L +Q+V
Sbjct: 2920 LTQATAAGQQVQMIPTVTATAQVVQQKLMQQQVV 2953
Score = 37 (18.1 bits), Expect = 8.5e-48, Sum P(4) = 8.5e-48
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 954 GEEVMIRNRFLEMNAPRDGSSVNKYYSLAH-AVNERVMRQPSMLRAGTL 1001
G V + L AP G+ V ++ A AV ER + QP GT+
Sbjct: 188 GHFVFQESSGLAQMAP--GTQVQLQHTGAPIAVRERRLSQPHAQSGGTV 234
>UNIPROTKB|L7N089 [details] [associations]
symbol:EP400 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] GeneTree:ENSGT00530000063427 EMBL:AAEX03014584
Ensembl:ENSCAFT00000010365 Uniprot:L7N089
Length = 3110
Score = 420 (152.9 bits), Expect = 2.9e-50, Sum P(5) = 2.9e-50
Identities = 101/277 (36%), Positives = 147/277 (53%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS+L G LRDYQ +GL W+ LY LNGILADE GLGKTVQ++A A+L +GN+GP
Sbjct: 1077 PSLLY-GVLRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGP 1135
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HL++V ++ W+ EL +W P + + YVG+ + + FNV + Y+
Sbjct: 1136 HLVVVRGCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWTEPNSFNVCIAPYKQFF 1195
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
+ +V W+ ++IDE QR++ + R Q+RLLL PL N
Sbjct: 1196 RGYASFMRVRWRCLVIDEMQRVRGMTERHWEAVFTLRSQQRLLLIDAPLHNTFLELWTMV 1255
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P + +R H P + P ++ + D+ KV+I RLH++ +PF+LRR
Sbjct: 1256 HFLIPGI--SRPYLH----LPLK--AP-NDENQDYYH---KVVI--RLHRVTQPFILRRT 1301
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGT 1268
DVE L K VL+CR+S+ Q A+Y D I GT
Sbjct: 1302 KRDVEKQLTKKYEHVLKCRLSSRQKALYEDVILQPGT 1338
Score = 221 (82.9 bits), Expect = 2.9e-50, Sum P(5) = 2.9e-50
Identities = 62/175 (35%), Positives = 93/175 (53%)
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GKL L +L KL+ G RVL+ S M +LDILE +L + L Y RID + E R+ +
Sbjct: 1880 GKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELM 1939
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN D F +LS + G++L AD V+ YD D NP + +A RIG++++V
Sbjct: 1940 RSFN-RDRRIFCAILSTHSRATGVSLVEADAVVFYDNDLNPVMDAKAQEWCERIGRRKDV 1998
Query: 1448 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA--GKDRYIGSIEGLIRNNIQQ 1500
+ + +S + E++L GT DL ++A G D Y S+ L + IQ+
Sbjct: 1999 HIYRL------VSGNSIEEKLLKNGTKDLIREVAAQGND-Y--SMAFLTQRTIQE 2044
Score = 121 (47.7 bits), Expect = 3.0e-19, Sum P(5) = 3.0e-19
Identities = 41/122 (33%), Positives = 60/122 (49%)
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
P +D+ + KV+I RLH++ +PF+LRR DVE L K VL+CR+S+ Q A
Sbjct: 1270 PLKAPNDENQDYYHKVVI--RLHRVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSSRQKA 1327
Query: 1259 IY-DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD 1317
+Y D I GT + K+ + V L + L++ CNHP L P +
Sbjct: 1328 LYEDVILQPGT---------QEALKSGHF-VDVLSIL----LRLQRICNHPGLVEPRLPE 1373
Query: 1318 LS 1319
S
Sbjct: 1374 SS 1375
Score = 60 (26.2 bits), Expect = 2.9e-50, Sum P(5) = 2.9e-50
Identities = 28/108 (25%), Positives = 53/108 (49%)
Query: 775 EIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQ----LKSISQWRKK--LLEAH 828
E +A+ ++ +++ L ++ + +R++ Q+A R K L QW E
Sbjct: 766 EQIALENQIHQRIADL-RKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERR 824
Query: 829 WAIRDARTARNRGVAKYHE-RILREFSKRKDD-DRNKRMEALKNNDVE 874
W + AR R V ++HE + LRE RK++ +R +R+ A ++E
Sbjct: 825 WKMAAARKLI-RTVVRHHEEKKLREERGRKEEQNRLRRIAASTAREIE 871
Score = 58 (25.5 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 38/131 (29%), Positives = 50/131 (38%)
Query: 554 QAVSSSNVQSLPKEEAYAGDDKAAVSPVG-QGMSAVTKEPAPVVVPGKEEQQA-PVSSVK 611
Q +S + + + AG +PVG G AV P PG + A PV
Sbjct: 1663 QTMSQAGALNALGSKPPAGSSVPVTAPVGVPGRVAVN--PLAAGEPGMASKPASPVGG-- 1718
Query: 612 SDQEVECGLLRTQ-QQSDFPADRGKSVAPQ-----VSACDAV---QVKKPAQATTALQPK 662
QE + LLR + Q F +R S AP + C V Q P A+ + Q K
Sbjct: 1719 PTQEEKTRLLRERLDQIYFVNERRCSRAPMYGRDLLRICSVVGREQTPWPG-ASDSSQQK 1777
Query: 663 DVGAARKYHGP 673
G A Y P
Sbjct: 1778 GTGPASSYTSP 1788
Score = 53 (23.7 bits), Expect = 2.9e-50, Sum P(5) = 2.9e-50
Identities = 27/128 (21%), Positives = 45/128 (35%)
Query: 309 PSSPVPVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXX 368
P PVP + + +P + A+P P P S+TS+
Sbjct: 646 PPQPVPQALHAPMPGKAQMQAAPLSTQPQTASTRPSVDLAQPCQRPPPATSSTSSIAPAS 705
Query: 369 XXXISLQQFSVHGRDNQVPSRQPVAIGNGLPPI--HPPQTSLNMTPGVDQPLPVKNSSGP 426
+S + S R PS A L P+ P +++ P P +N++ P
Sbjct: 706 GSGLSPARVSAGNR----PSS---AANKSLSPVTSRSPGAAVSAPPKPQSP--AQNAAPP 756
Query: 427 ENSQMQYL 434
++S L
Sbjct: 757 QDSSQDKL 764
Score = 46 (21.3 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 573 DDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAP 606
D K A +P Q A T PAP P AP
Sbjct: 1509 DTKVAAAPF-QTSQASTSAPAPRQPPAATSSTAP 1541
Score = 43 (20.2 bits), Expect = 2.9e-50, Sum P(5) = 2.9e-50
Identities = 35/152 (23%), Positives = 55/152 (36%)
Query: 1756 SLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRH 1815
S++KR+ + G + SG S T R G + + VR
Sbjct: 2624 SINKRLASPVAPGALTTSGGSAPAQVVH---TQPRAVGSPATATSDLVSLAPTQGVRAVT 2680
Query: 1816 TVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 1875
+V + + TP+ SL+ Q+ QL AH + + Q P
Sbjct: 2681 SVTASAVVTTSLTPVQTPTRSLVT-QVSQATGVQLPGKAITPAHFQLLRQQQQQPPPPPP 2739
Query: 1876 SRRNLPSRKIANAPKSRASLKT-GRLNCMPGH 1906
S+ +P + AP S A +K G+L P H
Sbjct: 2740 SQVQVPQIQ-GQAP-SPAQIKAVGKLT--PEH 2767
Score = 39 (18.8 bits), Expect = 2.4e-32, Sum P(4) = 2.4e-32
Identities = 17/68 (25%), Positives = 24/68 (35%)
Query: 1846 YPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAP--KSRASLKTGRLNCM 1903
+P+ T A +N H + P + P K+A AP S+AS
Sbjct: 1473 FPSTHPPRTAASATATANPQGHMRGRPPIATFSANPDTKVAAAPFQTSQASTSAPAPRQP 1532
Query: 1904 PGHTEDAA 1911
P T A
Sbjct: 1533 PAATSSTA 1540
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 387 PSR--QPVAIGN-------GLPPIHPPQTSLNMT 411
P+R QPV G P HPP+T+ + T
Sbjct: 1453 PNRLFQPVQYGQKPEGRTVAFPSTHPPRTAASAT 1486
Score = 38 (18.4 bits), Expect = 3.0e-32, Sum P(4) = 3.0e-32
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 1337 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
L + G +V + T+T ++++ L +Q+V
Sbjct: 3028 LTQATAAGQQVQMIPTVTATAQVVQQKLMQQQVV 3061
Score = 37 (18.1 bits), Expect = 1.0e-47, Sum P(4) = 1.0e-47
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 954 GEEVMIRNRFLEMNAPRDGSSVNKYYSLAH-AVNERVMRQPSMLRAGTL 1001
G V + L AP G+ V ++ A AV ER + QP GT+
Sbjct: 188 GHFVFQESSGLAQMAP--GTQVQLQHTGAPIAVRERRLSQPHAQSGGTV 234
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 582 (209.9 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 158/477 (33%), Positives = 242/477 (50%)
Query: 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNY-----GPH 1053
YQ G++W+ L+ + GIL DEMGLGKT+Q++A +A L K NY GP
Sbjct: 505 YQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRYQGLGPT 564
Query: 1054 LIIVPNAVLVNWKSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
+I+ P V+ W E H W P V+ ++ G+ + +E+A+ +L+T+Y +I
Sbjct: 565 VIVCPATVMHQWVKEFHTWWPPFRVAILHETGSYTNKKVKLIREIASCH-GILITSYSYI 623
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXX 1171
+ + DW Y+I+DE ++++ + + ++R R++L+G+P+QN+
Sbjct: 624 RLMQDNIHSYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSL 683
Query: 1172 XXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
P F + FS P G + NA ++T K + L + P++LRR
Sbjct: 684 FDFVFPGKLGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDAINPYLLRR 740
Query: 1232 RVEDVEGSL--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
DV+ SL P K VL CR++ DE+R+V +N I +
Sbjct: 741 MKADVKMSLSLPDKNEQVLFCRLT---------------------DEQRQVYQNFIDSKE 779
Query: 1290 VYKTLN------NRCMELRKTCNHP--------LLNYPYFSDLSK--DF-LVKSCGKLWI 1332
VY+ LN + + LRK CNHP +L +DL + F K GK+ +
Sbjct: 780 VYQILNGDMQVFSGLVALRKICNHPDLFSGGPKILKCVPDADLEEADQFGYWKRSGKMIV 839
Query: 1333 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392
++ +L + GHRVL F+ ++L ILE +L+ R Y R+DGTT++ R+ I +N
Sbjct: 840 VESLLKIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRYNE 899
Query: 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
D FIFLL+ R G G+NL AD VIIYDPD NP + QA RA RIGQK++V V
Sbjct: 900 -DKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 955
Score = 51 (23.0 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 27/125 (21%), Positives = 53/125 (42%)
Query: 1813 PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEP 1872
P+H ++R ER D L G L KY + + + H ++S + E
Sbjct: 1028 PKHQLKRKLERPADDDTLKGGLH--LKKSSSPKYSKS--SSSHLTRHRANSS---EAIET 1080
Query: 1873 SSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFS 1932
S +++ NL + + K A T +N + +++ + S + +GSS +
Sbjct: 1081 SEEAKGNLETFDQNSYAKDNAETATD-INSVNKSKQESLERADISLSQSLPGGAGSSE-N 1138
Query: 1933 AKMSD 1937
AK+++
Sbjct: 1139 AKVTE 1143
Score = 40 (19.1 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 806 QKAMREKQLKSISQWRKKL 824
QK +E+QLK I +K+L
Sbjct: 180 QKYNKEQQLKKIKAKQKRL 198
Score = 40 (19.1 bits), Expect = 4.2e-49, Sum P(3) = 4.2e-49
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 1776 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKR 1807
SH H++ H +D + + + +K+KR
Sbjct: 1198 SHDSHKEKSKKKHHKDAKFEGERIPHLVKQKR 1229
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 580 (209.2 bits), Expect = 3.9e-50, Sum P(2) = 3.9e-50
Identities = 209/705 (29%), Positives = 333/705 (47%)
Query: 991 RQPSML--RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
RQP L GTL YQ+ GL W+ + + ILADEMGLGKTVQ A+ Y + +G
Sbjct: 698 RQPDYLDTTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEG 756
Query: 1049 NY-GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNV 1103
+ GP L+ P + ++NW+ E W P + + YVG KD R+ + FS E A++
Sbjct: 757 HSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFENNAIRGGK 816
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK-DRESVLARDLDRYRC-QRRL--LLTGT 1159
+ + + + ++ I ID A D ++ + R + Q + +L
Sbjct: 817 KPSKMKKEASVKFHVLLTSYELITIDTAVLGSIDWACLVVDEAHRLKNNQSKFFRILNNY 876
Query: 1160 PLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219
PLQ+ E+F F P ++ +++ + K+ I +
Sbjct: 877 PLQHKLLLTGTPLQNNLEELFHLLN-----FLTP-ERFSNLEGFLEEFADIAKEDQI-KK 929
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
LH +L P MLRR DV +P K +++R +S +Q Y +I L + E R
Sbjct: 930 LHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFI-----LTRNFEALNTR 984
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS-DLSK--------DFLVKSCGKL 1330
N + +L N M+L+K CNHP L +P + + +K L KS GKL
Sbjct: 985 GGGNQV-------SLLNVVMDLKKCCNHPYL-FPAAAMEAAKMPNGMYEGGGLTKSSGKL 1036
Query: 1331 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390
+L ++L KL+ GHRVL+FS MTK+LD+LE++L+ Y RIDG + R+ AI F
Sbjct: 1037 LLLQKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRF 1096
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV- 1449
N+ + F+FLLS RA G G+NL +ADTV+IYD D NP N+ QA +RAHRIGQ ++V +
Sbjct: 1097 NAPGAPQFVFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIY 1156
Query: 1450 --IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQYKIDM 1505
+ +V ++I+ K+ + + V L K + ++ +++ ++ D
Sbjct: 1157 RFVTKASVEERITQVAKKKMMLTHLVV--RPGLGSKTGSMSKQELDDILKFGTEELFKDE 1214
Query: 1506 ADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSE------ 1559
+ G+ D H + + ++ LL +R Q+ D LQ +N ++ +
Sbjct: 1215 GEGENKEGQEDSSVIHYDDK-AIDRLL---DRNQDATDDT-ELQSMNEYLSSFKVAQYVV 1269
Query: 1560 -DEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSKKPSKNILFGSNIG 1617
DE E +++ E EE D K LR ++ +A NL K K I +
Sbjct: 1270 KDEEEAEEEVQREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGK--GKRIR--KQVN 1325
Query: 1618 VDSGEIETERKRGPKGKKYPNY----KEVDDEIGEYSEASSDERN 1658
+ G E + + +Y +E D++ E SEA+S N
Sbjct: 1326 YNDGSQEDRDWQDDQSDGQSDYSVASEEGDEDFDERSEANSRRPN 1370
Score = 44 (20.5 bits), Expect = 3.9e-50, Sum P(2) = 3.9e-50
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1629 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
+G + +K NY + E ++ + SD ++ Y V
Sbjct: 1316 KGKRIRKQVNYNDGSQEDRDWQDDQSDGQSDYSV 1349
Score = 40 (19.1 bits), Expect = 1.0e-49, Sum P(2) = 1.0e-49
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1619 DSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
DS E +T+ PKG + KE D GE + ++ + PV
Sbjct: 1629 DSEE-KTDDTDKPKGSEAD--KETSDAKGEKKDDEPEKMDTTPV 1669
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 586 (211.3 bits), Expect = 4.2e-50, Sum P(4) = 4.2e-50
Identities = 156/476 (32%), Positives = 245/476 (51%)
Query: 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNY-----GPH 1053
YQ G++W+ L+ + GIL DEMGLGKT+Q++A +A L K NY GP
Sbjct: 499 YQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPT 558
Query: 1054 LIIVPNAVLVNWKSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
+I+ P V+ W E H W P V+ ++ G+ + +++A +L+T+Y +I
Sbjct: 559 IIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSFTHKKEKLVRDIAHCH-GILITSYSYI 617
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXX 1171
+ +S+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+
Sbjct: 618 RLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSL 677
Query: 1172 XXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
P F + FS P G + NA ++T K + L + P++LRR
Sbjct: 678 FDFIFPGKLGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRR 734
Query: 1232 RVEDVEGSL--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
DV+ SL P K VL CR++ DE+ +V +N I +
Sbjct: 735 MKSDVKMSLSLPDKNEQVLFCRLT---------------------DEQHKVYQNFIDSKE 773
Query: 1290 VYKTLNNRC------MELRKTCNHPLL------NYPYF--SDLSKD-F-LVKSCGKLWIL 1333
VY+ LN + LRK CNHP L N+ +L +D F K GK+ ++
Sbjct: 774 VYRILNGEMQIFSGLVALRKICNHPDLFSGGPKNFKGIPGEELEEDQFGYWKRSGKMIVV 833
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
+ +L + G RVLLFS ++LDILE +L+ ++ Y ++DGTT++ R+ I +N
Sbjct: 834 ESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNE- 892
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
D+ F+FLL+ R G G+NL A+ VIIYDPD NP + QA RA RIGQK++V V
Sbjct: 893 DASIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 948
Score = 45 (20.9 bits), Expect = 4.2e-50, Sum P(4) = 4.2e-50
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 806 QKAMREKQLKSISQWRKKL 824
QK +E+QLK I+ RK+L
Sbjct: 176 QKYNKEQQLKKITAKRKRL 194
Score = 44 (20.5 bits), Expect = 4.2e-50, Sum P(4) = 4.2e-50
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 1594 EVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEAS 1653
++NA+ + + K+I G+ I + E K P+ P D +G ++A
Sbjct: 1047 DLNASANDATPSEEKSIAMGAEINAATSNQEDPLKDAPQT---PRSLTSSDRLGGETDAE 1103
Query: 1654 S 1654
S
Sbjct: 1104 S 1104
Score = 44 (20.5 bits), Expect = 4.2e-50, Sum P(4) = 4.2e-50
Identities = 40/182 (21%), Positives = 67/182 (36%)
Query: 1775 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGD 1834
+ H+ +Q + R + + E P + +KR + + +ERS D L +
Sbjct: 1184 EKHLRPKQKPKNSKHRRDAKFEGTRIPHLVKKRQYQRQDNENESEVKERSNDDYVLEKLF 1243
Query: 1835 SSLLPFQMDNKYPAQL--RTDTEMKAHGESNSLRHDQSEPSSKSRRN-------LPS--- 1882
+ K+ A + + M E+N + D + SR+ +P+
Sbjct: 1244 KKSVGVHSVMKHDAIMDGASPDYMLVEAEANRVAQDALKALRLSRQRCLGAASGVPTWTG 1303
Query: 1883 -RKIANAP---KSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDV 1938
R +A AP KSR K N H A+ K S DG I G + S S
Sbjct: 1304 HRGLAGAPAGRKSRFGQKRNS-NFAVQHPSSASPKEK-SQDG-ILKKDGKDSVSEHFSGK 1360
Query: 1939 IQ 1940
++
Sbjct: 1361 VE 1362
Score = 40 (19.1 bits), Expect = 4.3e-50, Sum P(3) = 4.3e-50
Identities = 20/101 (19%), Positives = 35/101 (34%)
Query: 1437 RAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRN 1496
R R GQKR ++ L+ G + + +GK G + +
Sbjct: 1314 RKSRFGQKRNSNFAVQHPSSASPKEKSQDGILKKDGKDSVSEHFSGKVEDAELSSGALTS 1373
Query: 1497 NIQQYKIDMADEVINAGRFDQRTTH-EERRMTLETLL-HDE 1535
+ K+ + +I R + + H E L + HDE
Sbjct: 1374 SSLLAKMRARNHLILPARLESESGHVPEASAPLPSSTEHDE 1414
Score = 38 (18.4 bits), Expect = 1.8e-49, Sum P(4) = 1.8e-49
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 1908 EDAADHFKESWDGKIANA---SG---SSNFSAKM 1935
+D D E + GK+ +A SG SS+ AKM
Sbjct: 1347 KDGKDSVSEHFSGKVEDAELSSGALTSSSLLAKM 1380
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 585 (211.0 bits), Expect = 7.1e-50, Sum P(4) = 7.1e-50
Identities = 153/469 (32%), Positives = 244/469 (52%)
Query: 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNY-----GPH 1053
YQ G++W+ L+ + GIL DEMGLGKT+Q++A +A L K NY GP
Sbjct: 506 YQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFKGLGPT 565
Query: 1054 LIIVPNAVLVNWKSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
+I+ P V+ W E H W P V+ ++ G+ Q+ +++A +L+T+Y +I
Sbjct: 566 IIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTQKKEKLIRDIAHCH-GILITSYSYI 624
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXX 1171
+ +S+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+
Sbjct: 625 RLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSL 684
Query: 1172 XXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
P F + FS P G + NA ++T K + L + P++LRR
Sbjct: 685 FDFIFPGKLGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRR 741
Query: 1232 RVEDVEGSL--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
DV+ SL P K VL CR++ Q +Y +D + E R+ + +
Sbjct: 742 MKSDVKMSLSLPDKNEQVLFCRLTEEQHKVYQNF-------IDSK-EVYRILNGDM---Q 790
Query: 1290 VYKTLNNRCMELRKTCNHPLL------NYPYFSDLSKD--F-LVKSCGKLWILDRILIKL 1340
++ L + LRK CNHP L N D ++ F K GK+ +++ +L
Sbjct: 791 IFSGL----VALRKICNHPDLFSGGPKNLKTIPDDDEEDQFGYWKRSGKMIVVESLLKIW 846
Query: 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400
+ G RVLLFS ++LDILE +L+ ++ Y ++DGTT++ R+ I +N D+ F+F
Sbjct: 847 HKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNE-DTSIFVF 905
Query: 1401 LLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
LL+ R G G+NL A+ VIIYDPD NP + QA RA RIGQK++V V
Sbjct: 906 LLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 954
Score = 49 (22.3 bits), Expect = 7.1e-50, Sum P(4) = 7.1e-50
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 1440 RIGQKREVKVIYMEAVVDKISSHQK-EDEL-RSGGTVDLEDDLAGKDRYIGSIEGLIRNN 1497
R GQKR K SS +K +D + R G + + +GK S G + ++
Sbjct: 1323 RFGQKRNSKFSVQHP--SSASSKEKCQDGVPRKDGKDNASEHFSGKVEDAESSPGALPSS 1380
Query: 1498 IQQYKIDMADEVINAGRFDQRTTHEE 1523
K+ + +I R + H+E
Sbjct: 1381 SLLAKMRARNHLILPQRLESENAHQE 1406
Score = 42 (19.8 bits), Expect = 7.1e-50, Sum P(4) = 7.1e-50
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 603 QQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQ 640
Q A +S QE +C L +T+Q S +D+ + Q
Sbjct: 2 QNARISHSSQTQEQDCLLSKTEQ-SQCVSDKQEMTIKQ 38
Score = 42 (19.8 bits), Expect = 7.1e-50, Sum P(4) = 7.1e-50
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 378 SVHGRDNQVPSRQPVAIG---NGLPPIHPPQTSLNMTP-GVD 415
S GR ++VP R P + + + + P +L + GVD
Sbjct: 62 SAEGRSSEVPKRGPALLHIDRHQIQTVEPSAQALELQGLGVD 103
Score = 41 (19.5 bits), Expect = 7.1e-50, Sum P(4) = 7.1e-50
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 806 QKAMREKQLKSISQWRKKL 824
QK +E+QLK I+ +K+L
Sbjct: 182 QKYNKEQQLKKITAKQKRL 200
Score = 41 (19.5 bits), Expect = 4.8e-49, Sum P(4) = 4.8e-49
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 1894 SLKTGRLNCMPG-HTEDAADHFKESWDGKIANASGS 1928
S + + C G +D D+ E + GK+ +A S
Sbjct: 1338 SSASSKEKCQDGVPRKDGKDNASEHFSGKVEDAESS 1373
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 576 (207.8 bits), Expect = 7.5e-50, Sum P(4) = 7.5e-50
Identities = 156/471 (33%), Positives = 240/471 (50%)
Query: 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNY-----GPH 1053
YQ G++W+ L+ + GIL DEMGLGKT+Q++A +A L K NY GP
Sbjct: 504 YQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPT 563
Query: 1054 LIIVPNAVLVNWKSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
LI+ P V+ W E H W P V+ ++ G+ R +++ VL+T+Y +I
Sbjct: 564 LIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSCAHRKERLVRDIVHCH-GVLITSYSYI 622
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXX 1171
+ +S+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+
Sbjct: 623 RLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSL 682
Query: 1172 XXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
P F + FS P G + NA ++T K + L + P++LRR
Sbjct: 683 FDFTFPGKLGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRR 739
Query: 1232 RVEDVEGSL--PPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQKNPIYQA 1288
DV+ SL P K VL CR++ Q +Y ++I + R+ + N I+
Sbjct: 740 MKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNGE-------NQIFSG 792
Query: 1289 KVYKTLNNRCMELRKTCNHPLL--NYPY-FSDLSKDFLV-------KSCGKLWILDRILI 1338
V LRK CNHP L P S L +D L K GK+ +++ +L
Sbjct: 793 LV---------ALRKICNHPDLFSGGPKNTSALPEDGLEEEQFGYWKRSGKMIVVESLLK 843
Query: 1339 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 1398
+ G RVLLFS ++L ILE +L+ + Y ++DGTT++ R+ I +N D+ F
Sbjct: 844 IWHKQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNE-DTSIF 902
Query: 1399 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
+FLL+ R G G+NL A+ VIIYDPD NP + QA RA RIGQK++V V
Sbjct: 903 VFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 953
Score = 51 (23.0 bits), Expect = 7.5e-50, Sum P(4) = 7.5e-50
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 1835 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPS 1882
+S LP Q + RT MK GE+++ H + S PS
Sbjct: 1319 NSSLPVQRPSSLTE--RTQNNMKKEGEAHTAEHFSGKEDGASSSGAPS 1364
Score = 48 (22.0 bits), Expect = 7.5e-50, Sum P(4) = 7.5e-50
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 1767 EGEI--AVSGDSHMDHQQSGSWT-------HDRDEGED-EQVLQPKIKRKRS 1808
EGE A +G H+ Q G ++ HD E E E+ QPK K K S
Sbjct: 1141 EGECCQAQTGPVHLSEQTEGHFSKHKSKRKHDAAEEETTEKCPQPKQKAKNS 1192
Score = 47 (21.6 bits), Expect = 2.0e-49, Sum P(4) = 2.0e-49
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 1877 RRNLPSRKIANAPKSRASLKTGRL-NCMPGHTE-DAADHFKESWDGKIAN-ASGSSNFSA 1933
++ ++ ++ P R S T R N M E A+HF DG ++ A SS+ A
Sbjct: 1311 KKRFGQKRNSSLPVQRPSSLTERTQNNMKKEGEAHTAEHFSGKEDGASSSGAPSSSSLLA 1370
Query: 1934 KM 1935
+M
Sbjct: 1371 RM 1372
Score = 43 (20.2 bits), Expect = 5.2e-49, Sum P(3) = 5.2e-49
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 1847 PAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSR 1892
P L TE + +HD +E + + P +K N+ R
Sbjct: 1151 PVHLSEQTEGHFSKHKSKRKHDAAEEETTEKCPQPKQKAKNSRHHR 1196
Score = 42 (19.8 bits), Expect = 7.5e-50, Sum P(4) = 7.5e-50
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 782 RQYRKFVRLCERQRV---ELMRQVQT--SQKAMREKQLKSISQWRKKL 824
RQ K + Q ++ R++ + QK +E+QLK I+ +K+L
Sbjct: 148 RQINKIIEQLSPQAASNRDINRKLDSVKRQKYNKEQQLKKITAKQKRL 195
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 550 (198.7 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 112/268 (41%), Positives = 164/268 (61%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 358 NFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRI 402
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
DVE SLPPK I + +S +Q Y
Sbjct: 403 KTDVEKSLPPKKEIKIYLGLSKMQREWY 430
Score = 478 (173.3 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 126/348 (36%), Positives = 188/348 (54%)
Query: 1201 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 1255
++ADD W +T+ + ++ RLH +L+PF+LRR DVE SLPPK I + +S +
Sbjct: 366 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKM 425
Query: 1256 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 1310
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 426 QR---EWYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 473
Query: 1311 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369
PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLDILE+Y WR
Sbjct: 474 PGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGY 530
Query: 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 1429
Y R+DG T E+RE AI FN +S FIF+LS RA G G+NL SAD VI+YD D NP+
Sbjct: 531 EYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 590
Query: 1430 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 1480
+ QA+ RAHRIGQK+ V+V + E +V++ + D + + G +D + +
Sbjct: 591 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 650
Query: 1481 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 1526
K+ + I + + ++ DE I R +++T R+
Sbjct: 651 MAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGERKTAEMNERL 698
Score = 42 (19.8 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 1514 RFDQRTTHEERRMTLE 1529
R D +T HEER +E
Sbjct: 534 RLDGQTPHEEREEAIE 549
Score = 37 (18.1 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 1817 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 1845
+ER E ++ + L + G+SSL F+MD +
Sbjct: 684 LERGERKTAEMNERLQKMGESSLRNFRMDTE 714
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 574 (207.1 bits), Expect = 2.3e-49, Sum P(3) = 2.3e-49
Identities = 205/694 (29%), Positives = 328/694 (47%)
Query: 991 RQPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
+QP + A GTL YQ+ GL W+ + + ILADEMGLGKTVQ + + L + +G
Sbjct: 619 KQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEQG 678
Query: 1049 NY-GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNV 1103
+ GP+L+ P + ++NW+ E W P + Y G K+ RS + FS E A++
Sbjct: 679 HSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGK 738
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
V + + + ++ I ID+A + L D + +R + L N
Sbjct: 739 KVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLVVD-EAHRLKNNQSKFFRVL-N 796
Query: 1164 DXXXXXXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
P + + FH F P ++ +++ + K+ I +LH
Sbjct: 797 SYKIDYKLLLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHD 854
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
+L P MLRR DV ++P K +++R +S +Q Y +I ++ + +V
Sbjct: 855 LLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV-- 912
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILD 1334
+L N M+L+K CNHP L P + S D LVKS GKL +L
Sbjct: 913 ----------SLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQ 962
Query: 1335 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394
++L KL+ GHRVL+FS MTK+LD+LE++L++ Y RIDG + R+ AI FN+
Sbjct: 963 KMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPG 1022
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IY 1451
+ F FLLS RA G G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V + +
Sbjct: 1023 AQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVT 1082
Query: 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQ-YKIDMADE 1508
+V ++I+ K + + V L K + ++ +++ ++ +K D+
Sbjct: 1083 RASVEERITQVAKRKMMLTHLVV--RPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGG 1140
Query: 1509 VI-NAGRFDQRTTHEERRMTLETLLHDEERYQET----VHDVPSLQEVNRMIARSEDEVE 1563
V N D H + + L +++ +T +++ S +V + + R ED V+
Sbjct: 1141 VSDNKDVDDSSVIHYDDAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVQ 1200
Query: 1564 LFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSKKPSKNILFGSNIGVDSGE 1622
++++ E EE D K LR ++ +A NL K K I N D+ +
Sbjct: 1201 --EEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK--GKRIRKQVNYN-DASQ 1255
Query: 1623 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
+ E + E+ D EYS S DE
Sbjct: 1256 EDQEWQ-----------DELSDNQSEYSIGSEDE 1278
Score = 49 (22.3 bits), Expect = 2.3e-49, Sum P(3) = 2.3e-49
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1629 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
+G + +K NY + E E+ + SD ++ Y +
Sbjct: 1240 KGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSI 1273
Score = 46 (21.3 bits), Expect = 2.3e-49, Sum P(3) = 2.3e-49
Identities = 25/109 (22%), Positives = 45/109 (41%)
Query: 1786 WT-HDRDEGEDEQV----LQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPF 1840
W H + G E+V Q + K ++ + E +E+ + L + +S+ P
Sbjct: 1522 WVLHIKVPGSTEKVESEEYQENCESKEKLKEEKQEENEGIQEK---EKALEKPESNSSPG 1578
Query: 1841 QMDNKY--PAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIAN 1887
+ ++K PA+ T E K E+ + E K RN+ R + N
Sbjct: 1579 KGEDKEVKPAE-DTKVEEKEQSETQQNGDKEEEDGKKDDRNVNFRFMFN 1626
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 565 (203.9 bits), Expect = 2.7e-49, Sum P(3) = 2.7e-49
Identities = 150/477 (31%), Positives = 245/477 (51%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L +YQ+ ++W+ L+ + GI+ DEMGLGKTVQ+++ +A L + GP LI+ P
Sbjct: 795 LFEYQVTCVRWLYELHCQETGGIVGDEMGLGKTVQIVSFLASLHYSRRLGGPALIVAPAT 854
Query: 1061 VLVNWKSELHKWLPSVSC-IYYV-----GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD 1114
+L NW E HKW P +++ G D + + A K ++L+TT++ I +
Sbjct: 855 LLSNWIKEFHKWWPPFRVGLFHSSGSGGGGNDGSDKEDIVKKIAEKGHILLTTFDSIRIN 914
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 1174
+ L K W+Y+I+DE ++++ ++ + + + R++L+G+P+QN
Sbjct: 915 QEILLKYHWEYVILDEGHKIRNPDAEITLSCKQLQTPHRVILSGSPIQNKLTELWSLFDF 974
Query: 1175 XXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234
P F FS P G NA ++ K + L ++ P+MLRR
Sbjct: 975 VFPGRLGTLPIFKSQFSLPISVGGFA-NASPIQVQAAYKCAVA--LRDLISPYMLRRVKS 1031
Query: 1235 DVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293
DV SLP K VL C ++ Q +Y +++ + V D +R N +Y +
Sbjct: 1032 DVLKSLPSKNEQVLMCPLTPFQEKLYLEFLDSNDIKSV--LDGRR----NALYGIDI--- 1082
Query: 1294 LNNRCMELRKTCNHPLLNYPYFSDLSK--DF-LVKSCGKLWILDRILIKLQRTGHRVLLF 1350
L+K CNHP + + SD + D+ ++ KL +++ IL + G +VLLF
Sbjct: 1083 -------LKKICNHPDILHMDASDEDRPHDYGNIERSAKLKVVETILPLWFKQGDKVLLF 1135
Query: 1351 STMTKLLDILEEYLQ-WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1409
++LDI+E+Y++ Q Y R+DGTTS+ R+ + FN D FIFLL+ + G
Sbjct: 1136 CQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIRQRQCLVEQFNI-DPSLFIFLLTTKVGGL 1194
Query: 1410 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV---KVIYMEAVVDKISSHQ 1463
GLNL A+ VI++DPD NP + QA R +RIGQK+ V ++I + + +KI Q
Sbjct: 1195 GLNLTGANRVILFDPDWNPSTDMQARERVYRIGQKKAVTIYRLITLGTIEEKIYHRQ 1251
Score = 64 (27.6 bits), Expect = 2.7e-49, Sum P(3) = 2.7e-49
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 822 KKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDV-ERYREML 880
K+LL H ++ T + G K +++ L E+ K+K DR K+M+ K +V E+Y + L
Sbjct: 653 KELLNIH---KERWT--DDGNEKVYQKRLLEWKKKKIRDRIKKMDQKKRLEVLEKYTDNL 707
Query: 881 LEQQTS 886
++ +
Sbjct: 708 MKNNNN 713
Score = 38 (18.4 bits), Expect = 2.7e-49, Sum P(3) = 2.7e-49
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1857 KAHGESNSLRHDQSEPSSKSR 1877
K G++N D+S+ SK R
Sbjct: 1339 KDDGDNNYSSSDESDSKSKKR 1359
Score = 37 (18.1 bits), Expect = 1.8e-46, Sum P(3) = 1.8e-46
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 854 SKRKDDDRNKRMEALKNNDVE 874
+K KDDD N++ E +N + E
Sbjct: 548 NKEKDDD-NEKEENDENENEE 567
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 559 (201.8 bits), Expect = 6.1e-49, Sum P(4) = 6.1e-49
Identities = 159/466 (34%), Positives = 238/466 (51%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
GTL YQ+ GL W+ + + ILADEMGLGKTVQ + + L + + GP+L+ P
Sbjct: 81 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 140
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYD 1114
+ ++NW+ E W P + Y G K+ RS + FS E A++ V + +
Sbjct: 141 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 200
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 1174
+ + ++ I ID+A + L D + +R + L N
Sbjct: 201 KFHVLLTSYELITIDQAILGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLT 258
Query: 1175 XXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233
P + + FH F P ++ +++ + K+ I +LH +L P MLRR
Sbjct: 259 GTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLK 316
Query: 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293
DV ++P K +++R +S +Q Y +I ++ + +V +
Sbjct: 317 ADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------S 364
Query: 1294 LNNRCMELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGH 1345
L N M+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GH
Sbjct: 365 LLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGH 424
Query: 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405
RVL+FS MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS R
Sbjct: 425 RVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTR 484
Query: 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
A G G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V +IY
Sbjct: 485 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV-MIY 529
Score = 49 (22.3 bits), Expect = 6.1e-49, Sum P(4) = 6.1e-49
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1629 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
+G + +K NY + E E+ + SD ++ Y +
Sbjct: 724 KGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSI 757
Score = 45 (20.9 bits), Expect = 6.1e-49, Sum P(4) = 6.1e-49
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 824 LLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNK 863
L +A+W R+ + + K R+L++ K +DD + K
Sbjct: 20 LKQAYWGHRELMLGEDTRLPK---RLLKKGKKLRDDKQEK 56
Score = 42 (19.8 bits), Expect = 6.1e-49, Sum P(4) = 6.1e-49
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 1516 DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1563
+Q T + + L + Q V + ++EV R I + E+ V+
Sbjct: 652 NQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVD 699
Score = 41 (19.5 bits), Expect = 2.2e-48, Sum P(3) = 2.2e-48
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 1540 ETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATI 1599
+ +++ S +V + + R ED VE +++ E EE D K LR ++ +
Sbjct: 662 QNMNEYLSSFKVAQYVVREEDGVE---EVEREIIKQEENVDPDYWEKLLRHHYEQQQEDL 718
Query: 1600 A-NLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
A NL K K I N D+ + + E + E+ D EYS S DE
Sbjct: 719 ARNLGK--GKRIRKQVNYN-DASQEDQEWQ-----------DELSDNQSEYSIGSEDE 762
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 561 (202.5 bits), Expect = 7.2e-49, Sum P(3) = 7.2e-49
Identities = 193/642 (30%), Positives = 302/642 (47%)
Query: 992 QPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
QP + A GTL YQ+ GL W+ + + ILADEMGLGKT+Q + + L +
Sbjct: 723 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 782
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLV 1105
GP L+ P + ++NW+ E W P + Y G KD R+ + FS E A+K
Sbjct: 783 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 842
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDX 1165
+ + + ++ I ID+A R + L D + +R + L N
Sbjct: 843 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGY 900
Query: 1166 XXXXXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P + + FH F P ++ +++ + K+ I +LH +L
Sbjct: 901 KIDHKLLLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLL 958
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
P MLRR DV ++P K +++R +S +Q Y +I L + E R N
Sbjct: 959 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQ 1013
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDR 1335
+ +L N M+L+K CNHP L +P + S L+K+ GKL +L +
Sbjct: 1014 V-------SLLNIMMDLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKASGKLMLLQK 1065
Query: 1336 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395
+L KL+ GHRVL+FS MTK+LD+LE++L + Y RIDG + R+ AI FN+ +
Sbjct: 1066 MLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGA 1125
Query: 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYM 1452
F FLLS RA G G+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + +
Sbjct: 1126 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1185
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512
+V ++I+ K + + V L K GS+ ++I ++ + + N
Sbjct: 1186 ASVEERITQVAKRKMMLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENE 1240
Query: 1513 GRF---DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVE 1563
G D H + L +++ ++T DV ++ E V + + R ED++E
Sbjct: 1241 GENKEEDSSVIHYDNEAIARLLDRNQDATEDT--DVQNMNEYLSSFKVAQYVVREEDKIE 1298
Query: 1564 LFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSK 1604
+++ E EE D K LR ++ +A NL K
Sbjct: 1299 ---EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK 1337
Score = 57 (25.1 bits), Expect = 7.2e-49, Sum P(3) = 7.2e-49
Identities = 23/99 (23%), Positives = 34/99 (34%)
Query: 1823 RSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPS 1882
+ T P +GD S P + D + + E GE D P+ L
Sbjct: 1552 KPATPAPSEKGDGSRTPLEKDEVENQEEKP--EKNRTGEKIETEADAPSPAPSLGERLEP 1609
Query: 1883 RKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGK 1921
RKI+ + G + PG+ D ES G+
Sbjct: 1610 RKISL--EEEVPGVPGEMEPEPGYRGDREKSATESTPGE 1646
Score = 49 (22.3 bits), Expect = 7.2e-49, Sum P(3) = 7.2e-49
Identities = 24/83 (28%), Positives = 33/83 (39%)
Query: 346 AKARPTVSPSPL-GSTTSAAXXXXXXXISL-QQFSVHGRDNQVPSRQPVAIGNGLPPIHP 403
AK R + +P GS + A ++ +Q S V S PVA +G PP P
Sbjct: 190 AKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA-----AVSSAAPVA-PSG-PPTLP 242
Query: 404 PQTSLNMTPGVDQPLPVKNSSGP 426
P S + P + K GP
Sbjct: 243 PPPSADTQPPPIRRAKTKEGKGP 265
Score = 47 (21.6 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 569 AYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSD 628
A A AA + V + +SA APV G P S+ Q +T++
Sbjct: 207 AVAAAAAAAAAAVAEQVSAAVSSAAPVAPSGPPTLPPPPSA--DTQPPPIRRAKTKEGKG 264
Query: 629 FPADRGKSVAPQV 641
P + +S +P+V
Sbjct: 265 -PGHKRRSKSPRV 276
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 571 (206.1 bits), Expect = 7.2e-49, Sum P(5) = 7.2e-49
Identities = 202/685 (29%), Positives = 321/685 (46%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
GTL YQ+ GL W+ + + ILADEMGLGKTVQ + + L + + GP+L+ P
Sbjct: 614 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 673
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYD 1114
+ ++NW+ E W P + Y G K+ RS + FS E A++ V + +
Sbjct: 674 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 733
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 1174
+ + ++ I ID+A + L D + +R + L N
Sbjct: 734 KFHVLLTSYELITIDQAILGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLT 791
Query: 1175 XXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233
P + + FH F P ++ +++ + K+ I +LH +L P MLRR
Sbjct: 792 GTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLK 849
Query: 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293
DV ++P K +++R +S +Q Y +I ++ + +V +
Sbjct: 850 ADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------S 897
Query: 1294 LNNRCMELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGH 1345
L N M+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GH
Sbjct: 898 LLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGH 957
Query: 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405
RVL+FS MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS R
Sbjct: 958 RVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTR 1017
Query: 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSH 1462
A G G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V + + +V ++I+
Sbjct: 1018 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQV 1077
Query: 1463 QKEDELRSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQ-YKIDMADEVINAGRFDQRT 1519
K + + V L K + ++ +++ ++ +K D+ + N D
Sbjct: 1078 AKRKMMLTHLVV--RPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGD--NKDVEDSSV 1133
Query: 1520 THEERRMTLETLLHDEERYQET----VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWI 1575
H + + L +++ +T +++ S +V + + R ED VE +++ E
Sbjct: 1134 IHYDDAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVE---EVEREIIKQ 1190
Query: 1576 EEMTRYDQVPKWLRASTKEVNATIA-NLSKKPSKNILFGSNIGVDSGEI-ETERKRGPKG 1633
EE D K LR ++ +A NL K K I N S E E + +
Sbjct: 1191 EENVDPDYWEKLLRHHYEQQQEDLARNLGK--GKRIRKQVNYNDASQEDQEWQDELSDNQ 1248
Query: 1634 KKYPNYKEVDDE-IGEYSEASSDER 1657
+Y E +DE E E S R
Sbjct: 1249 SEYSIGSEDEDEDFEERPEGQSGRR 1273
Score = 49 (22.3 bits), Expect = 7.2e-49, Sum P(5) = 7.2e-49
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1629 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
+G + +K NY + E E+ + SD ++ Y +
Sbjct: 1220 KGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSI 1253
Score = 49 (22.3 bits), Expect = 7.2e-49, Sum P(5) = 7.2e-49
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 576 AAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGK 635
AA + V + VT P + P + Q P+ K+ + G+ + + S +GK
Sbjct: 124 AAAAAVAAAVETVTIAPPLTISPQQAPQPVPIRKAKTKEGKGPGVRKKVKGSKDAKKKGK 183
Score = 45 (20.9 bits), Expect = 7.2e-49, Sum P(5) = 7.2e-49
Identities = 27/100 (27%), Positives = 42/100 (42%)
Query: 1738 PVSPQKFGSLSALEARPGSLSKRMP------DELEEGEIAVSGDSHMDHQQSGSWTHDRD 1791
P PQK + L A G L + +P D+LE + ++ QQ+G D +
Sbjct: 1508 PPPPQK----TLLMAPVGLLKEVLPEKEKILDKLETDDTKAEEKEPIETQQNGDKEED-E 1562
Query: 1792 EGEDEQVLQPKIKRKRSIR---VRPRHTVERPEERSCTDT 1828
EG+ E K K +I HT+ + EER+ +
Sbjct: 1563 EGKKED-RNGKFKFMFNIADGGFTELHTLWQNEERAAVSS 1601
Score = 44 (20.5 bits), Expect = 7.2e-49, Sum P(5) = 7.2e-49
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 824 LLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNK 863
L +A+W R+ + A+ +R++++ K +DD + K
Sbjct: 553 LKQAYWGHRELMLGED---ARLPKRLVKKGKKLRDDKQEK 589
Score = 37 (18.1 bits), Expect = 9.3e-48, Sum P(4) = 9.3e-48
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1631 PKGKKYPNYKEVDDEIGEYSEASSDERNG 1659
P+ +K + E DD E E ++NG
Sbjct: 1528 PEKEKILDKLETDDTKAEEKEPIETQQNG 1556
Score = 37 (18.1 bits), Expect = 1.2e-47, Sum P(5) = 1.2e-47
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 414 VDQPLPVKNSSGPENSQMQ 432
+D+P P SG E+S+ +
Sbjct: 464 MDEPPPFDYGSGDEDSKSE 482
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 412 (150.1 bits), Expect = 9.3e-49, Sum P(3) = 9.3e-49
Identities = 115/374 (30%), Positives = 193/374 (51%)
Query: 1088 RSRLFSQEVAAL---KFNVLVTTYEFI-MYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143
+S++ +QE+ K +VLVTTY + +Y + L + +W Y+++DE ++++ +S ++
Sbjct: 387 KSQINAQEIVDRVMEKGHVLVTTYVGLRIYSKHILPR-EWGYVVLDEGHKIRNPDSDISL 445
Query: 1144 DLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNA 1203
+ + R++L+GTP+QN+ P F FS P G N+
Sbjct: 446 TCKKIKTVNRIILSGTPIQNNLIELWSLFDFVFPGRLGTLPVFQQEFSIPINIGGYA-NS 504
Query: 1204 DDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263
++ ++T K ++ L ++ P+MLRR DV LP K +VL +++ IQ +Y+
Sbjct: 505 NNLQVKTAYKCAVV--LRDLISPYMLRRLKSDVAQDLPKKNEMVLFVKLTKIQQELYE-- 560
Query: 1264 KATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF- 1322
L+ + + + ++N + + LRK CNHP L Y K++
Sbjct: 561 ---SFLQSEDLESILKGKRNVLMGVDI----------LRKICNHPDLVYRDTLMKRKNYG 607
Query: 1323 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV------YRRID 1375
KS GK+ +L +L Q H+ LLF ++LDILE+++ L+ Y R+D
Sbjct: 608 DPAKS-GKMQVLKNLLRLWQSENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMD 666
Query: 1376 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1435
G+T + R+ + FN D D +FLL+ + G G+NL AD VIIYDPD NP + QA
Sbjct: 667 GSTPISKRQMLVDAFNQ-DPDMHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDIQAR 725
Query: 1436 ARAHRIGQKREVKV 1449
RA R+GQKR++ +
Sbjct: 726 ERAWRLGQKRDITI 739
Score = 187 (70.9 bits), Expect = 9.3e-49, Sum P(3) = 9.3e-49
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-PHLIIVP 1058
+L DYQ +QW+ LY K GI+ DEMGLGKT+Q+++ +A L + G P L++VP
Sbjct: 270 SLFDYQKTCVQWLWELYTQKTGGIIGDEMGLGKTIQIISFLAGL-HYSGLLDKPVLVVVP 328
Query: 1059 NAVLVNWKSELHKWLPSVSCI 1079
VL W +E H+W P + CI
Sbjct: 329 ATVLNQWVNEFHRWWPPLRCI 349
Score = 58 (25.5 bits), Expect = 9.3e-49, Sum P(3) = 9.3e-49
Identities = 42/199 (21%), Positives = 78/199 (39%)
Query: 795 RVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFS 854
+V L + + +K + K +K + ++++ A AR A R +R+ E
Sbjct: 27 KVLLSKDAELDEKRL-SKAIKELESTQRQI-----ANLSARLAHPRTKISEKKRLKDEIH 80
Query: 855 KRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTE-EYLYKLG 913
++++ R + DV+ R L E + + DA + S +TE +YL + G
Sbjct: 81 WYEENELIPRQQ-----DVDDIRNRLKENKIQLKKDAPQSTQSTSRLPEETERDYLIRTG 135
Query: 914 SKITXXXXXXXXXXXXXXXXXXX---RLQGLSEE-EVRSAAACAGEEVMIRNRFLEMNAP 969
KIT R GL + A + EV + ++ NA
Sbjct: 136 -KITAFGNENAFQSEQTHEQQSHVFLREPGLDNKVNDEDYAYQSDSEVDDNDNSIDKNAV 194
Query: 970 RD-GSSVNKYYSLAHAVNE 987
RD G + + S+ H +++
Sbjct: 195 RDLGETNQESESVLHNIDD 213
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 561 (202.5 bits), Expect = 9.9e-49, Sum P(2) = 9.9e-49
Identities = 194/642 (30%), Positives = 301/642 (46%)
Query: 992 QPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
QP + A GTL YQ+ GL W+ + + ILADEMGLGKT+Q + + L +
Sbjct: 681 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 740
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLV 1105
GP L+ P + ++NW+ E W P + Y G KD R+ + FS E A+K
Sbjct: 741 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 800
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDX 1165
+ + + ++ I ID+A R + L D + +R + L N
Sbjct: 801 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGY 858
Query: 1166 XXXXXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P + + FH F P ++ +++ + K+ I +LH +L
Sbjct: 859 KIDHKLLLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLL 916
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
P MLRR DV ++P K +++R +S +Q Y +I L + E R N
Sbjct: 917 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQ 971
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDR 1335
+ +L N M+L+K CNHP L +P + S L+KS GKL +L +
Sbjct: 972 V-------SLLNIMMDLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKSSGKLLLLQK 1023
Query: 1336 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395
+L KL+ GHRVL+FS MTK+LD+LE++L + Y RIDG + R+ AI FN+ +
Sbjct: 1024 MLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGA 1083
Query: 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYM 1452
F FLLS RA G G+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + +
Sbjct: 1084 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1143
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512
+V ++I+ K + + V L K GS+ ++I ++ + + N
Sbjct: 1144 ASVEERITQVAKRKMMLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENE 1198
Query: 1513 GRF---DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVE 1563
G D H + L +++ +T DV ++ E V + + R ED++E
Sbjct: 1199 GENKEEDSSVIHYDNEAIARLLDRNQDATDDT--DVQNMNEYLSSFKVAQYVVREEDKIE 1256
Query: 1564 LFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSK 1604
+++ E EE D K LR ++ +A NL K
Sbjct: 1257 ---EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK 1295
Score = 50 (22.7 bits), Expect = 9.9e-49, Sum P(2) = 9.9e-49
Identities = 22/83 (26%), Positives = 33/83 (39%)
Query: 346 AKARPTVSPSPL-GSTTSAAXXXXXXXISL-QQFSVHGRDNQVPSRQPVAIGNGLPPIHP 403
AK R + +P GS + A ++ +Q S V S P+A +G PP P
Sbjct: 147 AKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA-----AVSSATPIA-PSGPPPALP 200
Query: 404 PQTSLNMTPGVDQPLPVKNSSGP 426
P + + P + K GP
Sbjct: 201 PPPAPEIQPPPIRRAKTKEGKGP 223
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 564 (203.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 194/642 (30%), Positives = 302/642 (47%)
Query: 992 QPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
QP + A GTL YQ+ GL W+ + + ILADEMGLGKT+Q + + L +
Sbjct: 725 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 784
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLV 1105
GP L+ P + ++NW+ E W P + Y G KD R+ + FS E A+K
Sbjct: 785 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 844
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDX 1165
+ + + ++ I ID+A R + L D + +R + L N
Sbjct: 845 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGY 902
Query: 1166 XXXXXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P + + FH F P ++ +++ + K+ I +LH +L
Sbjct: 903 KIDHKLLLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLL 960
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
P MLRR DV ++P K +++R +S +Q Y +I L + E R N
Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQ 1015
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDR 1335
+ +L N M+L+K CNHP L +P + S L+KS GKL +L +
Sbjct: 1016 V-------SLLNIMMDLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQK 1067
Query: 1336 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395
+L KL+ GHRVL+FS MTK+LD+LE++L + Y RIDG + R+ AI FN+ +
Sbjct: 1068 MLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYM 1452
F FLLS RA G G+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + +
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512
+V ++I+ K + + V L K GS+ ++I ++ + + N
Sbjct: 1188 ASVEERITQVAKRKMMLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENE 1242
Query: 1513 GRF---DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVE 1563
G D H + L +++ ++T DV ++ E V + + R ED++E
Sbjct: 1243 GENKEEDSSVIHYDNEAIARLLDRNQDATEDT--DVQNMNEYLSSFKVAQYVVREEDKIE 1300
Query: 1564 LFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSK 1604
+++ E EE D K LR ++ +A NL K
Sbjct: 1301 ---EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK 1339
Score = 47 (21.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 22/83 (26%), Positives = 34/83 (40%)
Query: 346 AKARPTVSPSPL-GSTTSAAXXXXXXXISL-QQFSVHGRDNQVPSRQPVAIGNGLPPIHP 403
AK R + +P GS + A ++ +Q S V S P+A +G PP P
Sbjct: 191 AKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA-----AVSSATPIA-PSG-PPALP 243
Query: 404 PQTSLNMTPGVDQPLPVKNSSGP 426
P + ++ P + K GP
Sbjct: 244 PPPAADIQPPPIRRAKTKEGKGP 266
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 561 (202.5 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 194/642 (30%), Positives = 301/642 (46%)
Query: 992 QPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
QP + A GTL YQ+ GL W+ + + ILADEMGLGKT+Q + + L +
Sbjct: 776 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 835
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLV 1105
GP L+ P + ++NW+ E W P + Y G KD R+ + FS E A+K
Sbjct: 836 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 895
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDX 1165
+ + + ++ I ID+A R + L D + +R + L N
Sbjct: 896 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGY 953
Query: 1166 XXXXXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P + + FH F P ++ +++ + K+ I +LH +L
Sbjct: 954 KIDHKLLLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLL 1011
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
P MLRR DV ++P K +++R +S +Q Y +I L + E R N
Sbjct: 1012 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQ 1066
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDR 1335
+ +L N M+L+K CNHP L +P + S L+KS GKL +L +
Sbjct: 1067 V-------SLLNIMMDLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKSSGKLLLLQK 1118
Query: 1336 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395
+L KL+ GHRVL+FS MTK+LD+LE++L + Y RIDG + R+ AI FN+ +
Sbjct: 1119 MLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGA 1178
Query: 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYM 1452
F FLLS RA G G+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + +
Sbjct: 1179 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1238
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512
+V ++I+ K + + V L K GS+ ++I ++ + + N
Sbjct: 1239 ASVEERITQVAKRKMMLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENE 1293
Query: 1513 GRF---DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVE 1563
G D H + L +++ +T DV ++ E V + + R ED++E
Sbjct: 1294 GENKEEDSSVIHYDNEAIARLLDRNQDATDDT--DVQNMNEYLSSFKVAQYVVREEDKIE 1351
Query: 1564 LFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSK 1604
+++ E EE D K LR ++ +A NL K
Sbjct: 1352 ---EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK 1390
Score = 50 (22.7 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 22/83 (26%), Positives = 33/83 (39%)
Query: 346 AKARPTVSPSPL-GSTTSAAXXXXXXXISL-QQFSVHGRDNQVPSRQPVAIGNGLPPIHP 403
AK R + +P GS + A ++ +Q S V S P+A +G PP P
Sbjct: 242 AKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA-----AVSSATPIA-PSGPPPALP 295
Query: 404 PQTSLNMTPGVDQPLPVKNSSGP 426
P + + P + K GP
Sbjct: 296 PPPAPEIQPPPIRRAKTKEGKGP 318
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 564 (203.6 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 194/642 (30%), Positives = 302/642 (47%)
Query: 992 QPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
QP + A GTL YQ+ GL W+ + + ILADEMGLGKT+Q + + L +
Sbjct: 784 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 843
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLV 1105
GP L+ P + ++NW+ E W P + Y G KD R+ + FS E A+K
Sbjct: 844 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 903
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDX 1165
+ + + ++ I ID+A R + L D + +R + L N
Sbjct: 904 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGY 961
Query: 1166 XXXXXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P + + FH F P ++ +++ + K+ I +LH +L
Sbjct: 962 KIDHKLLLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLL 1019
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
P MLRR DV ++P K +++R +S +Q Y +I L + E R N
Sbjct: 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQ 1074
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDR 1335
+ +L N M+L+K CNHP L +P + S L+KS GKL +L +
Sbjct: 1075 V-------SLLNIMMDLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQK 1126
Query: 1336 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395
+L KL+ GHRVL+FS MTK+LD+LE++L + Y RIDG + R+ AI FN+ +
Sbjct: 1127 MLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGA 1186
Query: 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYM 1452
F FLLS RA G G+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + +
Sbjct: 1187 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1246
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512
+V ++I+ K + + V L K GS+ ++I ++ + + N
Sbjct: 1247 ASVEERITQVAKRKMMLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENE 1301
Query: 1513 GRF---DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVE 1563
G D H + L +++ ++T DV ++ E V + + R ED++E
Sbjct: 1302 GENKEEDSSVIHYDNEAIARLLDRNQDATEDT--DVQNMNEYLSSFKVAQYVVREEDKIE 1359
Query: 1564 LFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSK 1604
+++ E EE D K LR ++ +A NL K
Sbjct: 1360 ---EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK 1398
Score = 47 (21.6 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 22/83 (26%), Positives = 34/83 (40%)
Query: 346 AKARPTVSPSPL-GSTTSAAXXXXXXXISL-QQFSVHGRDNQVPSRQPVAIGNGLPPIHP 403
AK R + +P GS + A ++ +Q S V S P+A +G PP P
Sbjct: 250 AKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA-----AVSSATPIA-PSG-PPALP 302
Query: 404 PQTSLNMTPGVDQPLPVKNSSGP 426
P + ++ P + K GP
Sbjct: 303 PPPAADIQPPPIRRAKTKEGKGP 325
Score = 37 (18.1 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 590 KEPAPVVVPGKEEQQAPVSSVKSDQEVE 617
+E +VV +EE++ + ++EVE
Sbjct: 10 EEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 561 (202.5 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 194/642 (30%), Positives = 301/642 (46%)
Query: 992 QPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
QP + A GTL YQ+ GL W+ + + ILADEMGLGKT+Q + + L +
Sbjct: 776 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 835
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLV 1105
GP L+ P + ++NW+ E W P + Y G KD R+ + FS E A+K
Sbjct: 836 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 895
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDX 1165
+ + + ++ I ID+A R + L D + +R + L N
Sbjct: 896 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGY 953
Query: 1166 XXXXXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P + + FH F P ++ +++ + K+ I +LH +L
Sbjct: 954 KIDHKLLLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLL 1011
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
P MLRR DV ++P K +++R +S +Q Y +I L + E R N
Sbjct: 1012 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQ 1066
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDR 1335
+ +L N M+L+K CNHP L +P + S L+KS GKL +L +
Sbjct: 1067 V-------SLLNIMMDLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKSSGKLLLLQK 1118
Query: 1336 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395
+L KL+ GHRVL+FS MTK+LD+LE++L + Y RIDG + R+ AI FN+ +
Sbjct: 1119 MLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGA 1178
Query: 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYM 1452
F FLLS RA G G+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + +
Sbjct: 1179 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1238
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512
+V ++I+ K + + V L K GS+ ++I ++ + + N
Sbjct: 1239 ASVEERITQVAKRKMMLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENE 1293
Query: 1513 GRF---DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVE 1563
G D H + L +++ +T DV ++ E V + + R ED++E
Sbjct: 1294 GENKEEDSSVIHYDNEAIARLLDRNQDATDDT--DVQNMNEYLSSFKVAQYVVREEDKIE 1351
Query: 1564 LFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSK 1604
+++ E EE D K LR ++ +A NL K
Sbjct: 1352 ---EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK 1390
Score = 50 (22.7 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 22/83 (26%), Positives = 33/83 (39%)
Query: 346 AKARPTVSPSPL-GSTTSAAXXXXXXXISL-QQFSVHGRDNQVPSRQPVAIGNGLPPIHP 403
AK R + +P GS + A ++ +Q S V S P+A +G PP P
Sbjct: 242 AKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA-----AVSSATPIA-PSGPPPALP 295
Query: 404 PQTSLNMTPGVDQPLPVKNSSGP 426
P + + P + K GP
Sbjct: 296 PPPAPEIQPPPIRRAKTKEGKGP 318
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 415 (151.1 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 109/349 (31%), Positives = 185/349 (53%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA---YLME--FK 1047
P ++A TLR YQ G+ W+ L L+GIL D+MGLGKT+Q + +++ ++ E FK
Sbjct: 1295 PVTIKA-TLRKYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIVSSDHHIREENFK 1353
Query: 1048 --GN--YG--PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101
G+ Y P L+I P +++ +W+ E++++ P + + Y G+ R L Q A
Sbjct: 1354 ETGSAEYRKLPSLVICPPSLIGHWEQEINQYAPFMKVLVYAGSPSIRIPLRGQIPDA--- 1410
Query: 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPL 1161
+V+VT+Y+ D L+K D+ Y ++DE +K+ S L++ + R + + RL+L+GTP+
Sbjct: 1411 DVVVTSYDVCRNDVESLTKHDYNYCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPI 1470
Query: 1162 QNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221
QN+ P K FH+ F++P + N+ E E + + LH
Sbjct: 1471 QNNVLELWSLFDFLMPGFLGTEKVFHEKFAKPI---AASRNSKTSSKEQEAGALAMESLH 1527
Query: 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATG-TLRVDPEDEKRR 1279
+ + PFMLRR EDV LPPK+ C +S +Q +Y D+ K T++ D + ++
Sbjct: 1528 KQVLPFMLRRLKEDVLSDLPPKIIQDYYCELSDLQKKLYKDFAKTQKETIKTDVQGSEKE 1587
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----NYPYFSDLSKDFLV 1324
K ++QA Y +RK CNHP L +P ++++++ FL+
Sbjct: 1588 -GKTHVFQALQY---------MRKLCNHPALVMSEQHPKYAEINQ-FLI 1625
Score = 216 (81.1 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 52/126 (41%), Positives = 73/126 (57%)
Query: 1345 HRVLLFSTMTKLLDILEEYLQWRQL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401
HR L+F + +LDI+E L + L + R+DG+T DR+S + FN D + L
Sbjct: 1687 HRALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNE-DPSIDVLL 1745
Query: 1402 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDK 1458
L+ + G GLNL ADTVI + D NP N+ QA+ RAHR+GQK+ V V I + + +K
Sbjct: 1746 LTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEK 1805
Query: 1459 ISSHQK 1464
I QK
Sbjct: 1806 IMGLQK 1811
Score = 41 (19.5 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 25/153 (16%), Positives = 70/153 (45%)
Query: 718 QKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEXXXXXXXXXXXXXXXEVDQQQQEIM 777
+ ++ + ++ +G LA+ K++ P ++ RL+ + E+ Q+++
Sbjct: 1507 RNSKTSSKEQEAGALAMESLHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELSDLQKKL- 1565
Query: 778 AMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTA 837
Y+ F + Q+ + VQ S+K + +++ Q+ +KL H A+ +
Sbjct: 1566 ------YKDFAKT---QKETIKTDVQGSEKEGKTHVFQAL-QYMRKLCN-HPAL--VMSE 1612
Query: 838 RNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870
++ A+ ++ ++ + ++ + ++ +LKN
Sbjct: 1613 QHPKYAEINQFLISRNTDLRNIEHAPKLLSLKN 1645
Score = 37 (18.1 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 6/33 (18%), Positives = 20/33 (60%)
Query: 983 HAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSL 1015
H +N V+++ + + + I+G+++++S+
Sbjct: 438 HCLNSMVLQKDMVAKCWEAKHGGILGVRYLVSV 470
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 559 (201.8 bits), Expect = 3.0e-48, Sum P(6) = 3.0e-48
Identities = 159/466 (34%), Positives = 238/466 (51%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
GTL YQ+ GL W+ + + ILADEMGLGKTVQ + + L + + GP+L+ P
Sbjct: 561 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 620
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYD 1114
+ ++NW+ E W P + Y G K+ RS + FS E A++ V + +
Sbjct: 621 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 680
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 1174
+ + ++ I ID+A + L D + +R + L N
Sbjct: 681 KFHVLLTSYELITIDQAILGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLT 738
Query: 1175 XXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233
P + + FH F P ++ +++ + K+ I +LH +L P MLRR
Sbjct: 739 GTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLK 796
Query: 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293
DV ++P K +++R +S +Q Y +I ++ + +V +
Sbjct: 797 ADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------S 844
Query: 1294 LNNRCMELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGH 1345
L N M+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GH
Sbjct: 845 LLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGH 904
Query: 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405
RVL+FS MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS R
Sbjct: 905 RVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTR 964
Query: 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
A G G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V +IY
Sbjct: 965 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV-MIY 1009
Score = 54 (24.1 bits), Expect = 3.0e-48, Sum P(6) = 3.0e-48
Identities = 35/159 (22%), Positives = 62/159 (38%)
Query: 1730 RRLTQIVS--PVSPQKFGSLSALEARPGSLSKRMPDEL---EEGEIAVSGDSHMDHQQSG 1784
++ ++++S P +P L A P L +M +L +E E+ V Q+
Sbjct: 1400 KKPSEVISSDPNTPVPASPAHLLPA-PLGLPDKMEAQLGYMDEKELGVQKPKKPPEIQAL 1458
Query: 1785 SWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTP--LHRGDSSLLPFQM 1842
DR EGED+ +R P + P+E + L + + SL+ +
Sbjct: 1459 PTALDRVEGEDKHESSDGKERLEETEKAPPSPEQLPKEEMLPEKEKILDKLELSLIHSRG 1518
Query: 1843 D-NKY-PAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 1879
D N + P R + + + N + D E K +N
Sbjct: 1519 DGNDFRPDDTRVEEKEPIETQQNGDKEDDEE-GKKEDKN 1556
Score = 49 (22.3 bits), Expect = 3.0e-48, Sum P(6) = 3.0e-48
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1629 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
+G + +K NY + E E+ + SD ++ Y +
Sbjct: 1204 KGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSI 1237
Score = 49 (22.3 bits), Expect = 3.0e-48, Sum P(6) = 3.0e-48
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 576 AAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGK 635
AA + V + VT P V P + Q P+ K+ + G+ + + S +GK
Sbjct: 71 AAAAAVAAAVETVTIAPPLAVSPQQPPQPVPIRKAKTKEGKGPGVRKKIKGSKDAKKKGK 130
Score = 47 (21.6 bits), Expect = 3.0e-48, Sum P(6) = 3.0e-48
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 824 LLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNK 863
L +A+W R+ + A+ +R++++ K KDD + K
Sbjct: 500 LKQAYWGHRELMLGED---ARLPKRLVKKGKKLKDDKQEK 536
Score = 42 (19.8 bits), Expect = 3.0e-48, Sum P(6) = 3.0e-48
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 1516 DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1563
+Q T + + L + Q V + ++EV R I + E+ V+
Sbjct: 1132 NQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVD 1179
Score = 41 (19.5 bits), Expect = 1.2e-47, Sum P(5) = 1.2e-47
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 1540 ETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATI 1599
+ +++ S +V + + R ED VE +++ E EE D K LR ++ +
Sbjct: 1142 QNMNEYLSSFKVAQYVVREEDGVE---EVEREIIKQEENVDPDYWEKLLRHHYEQQQEDL 1198
Query: 1600 A-NLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
A NL K K I N D+ + + E + E+ D EYS S DE
Sbjct: 1199 ARNLGK--GKRIRKQVNYN-DASQEDQEWQ-----------DELSDNQSEYSIGSEDE 1242
Score = 37 (18.1 bits), Expect = 5.1e-46, Sum P(5) = 5.1e-46
Identities = 20/86 (23%), Positives = 41/86 (47%)
Query: 1566 DQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIET 1625
D+M+ + G+++E Q PK E+ A L + ++ S+ G + E ET
Sbjct: 1430 DKMEAQLGYMDEKELGVQKPK----KPPEIQALPTALDRVEGED-KHESSDGKERLE-ET 1483
Query: 1626 ER-----KRGPKGKKYPNYKEVDDEI 1646
E+ ++ PK + P +++ D++
Sbjct: 1484 EKAPPSPEQLPKEEMLPEKEKILDKL 1509
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 572 (206.4 bits), Expect = 3.2e-48, Sum P(5) = 3.2e-48
Identities = 159/516 (30%), Positives = 256/516 (49%)
Query: 960 RNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNK 1019
R R E A R+ S A + + P L + YQ G++WM L+ +
Sbjct: 446 RQRLREKEAKREAGEEESDESDAEF--DEGFKIPGFLWKKLFK-YQQTGVRWMWELHCQQ 502
Query: 1020 LNGILADEMGLGKTVQVMALIAYL----MEFKG-NY-----GPHLIIVPNAVLVNWKSEL 1069
GIL DEMGLGKT+Q++A +A L ++ +G NY GP +I+ P V+ W E
Sbjct: 503 AGGILGDEMGLGKTIQIIAFLAGLSYSKLKTRGSNYRYAGLGPTVIVCPATVMHQWVKEF 562
Query: 1070 HKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYII 1127
H W P V+ ++ G+ + E+ A +L+T+Y +I + + + DW Y+I
Sbjct: 563 HTWWPPFRVAVLHDTGSFTSKKEKLIPEIVA-SHGILITSYSYIRIMQDYIQRYDWHYVI 621
Query: 1128 IDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFH 1187
+DE ++++ + + ++R R +L+G+P+QN+ P F
Sbjct: 622 LDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFM 681
Query: 1188 DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG--SLPPKVS 1245
+ FS P G NA ++T K + L + P++LRR DV+ SLP K
Sbjct: 682 EQFSVPITMGGYA-NASPVQVQTAYKCACV--LRDTINPYLLRRMKADVKANLSLPDKNE 738
Query: 1246 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305
VL CR++ Q +Y +D + E ++ + +V+ L + LRK C
Sbjct: 739 QVLFCRLTEDQRQVYQTF-------LDSK-EVYQILNGDM---QVFSGL----IALRKIC 783
Query: 1306 NHP---------LLNYPYFSDLSKD--F-LVKSCGKLWILDRILIKLQRTGHRVLLFSTM 1353
NHP L P+ L+++ F K GK+ +++ +L + GHRVLLF+
Sbjct: 784 NHPDLFTGGPRLLRGIPH-DQLTEEEHFGYWKRSGKMIVVESLLRLWHKQGHRVLLFTQS 842
Query: 1354 TKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1413
++L+ILE +++ Y ++DGTT++ R+ I FN + D F+F+L+ R G G+NL
Sbjct: 843 RQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQN-KDIFVFILTTRVGGLGVNL 901
Query: 1414 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
A+ V+IYDPD NP + QA RA RIGQK++V V
Sbjct: 902 TGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTV 937
Score = 47 (21.6 bits), Expect = 3.2e-48, Sum P(5) = 3.2e-48
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 797 ELMRQVQT--SQKAMREKQLKSISQWRKKL 824
++ R++++ QK +EKQLK I +K+L
Sbjct: 154 DISRKIESVKRQKENKEKQLKKIRAKQKRL 183
Score = 42 (19.8 bits), Expect = 3.2e-48, Sum P(5) = 3.2e-48
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 572 GDDKAAVSPVGQGMSAVTK---EPAPVVVPG--KEEQQA--PVSSVKSDQEVECGLLRTQ 624
G + A+SP+ +SA+T E + +PG +EE A P + + LL+
Sbjct: 5 GTEDQALSPLSSPVSALTPGAPEDNGLSIPGSSREEPAAACPETVGAQNSRKSQPLLQIN 64
Query: 625 QQSDFPADRGKSVA 638
+Q D A
Sbjct: 65 RQEILSVDHSSQAA 78
Score = 42 (19.8 bits), Expect = 3.2e-48, Sum P(5) = 3.2e-48
Identities = 33/124 (26%), Positives = 52/124 (41%)
Query: 1797 QVLQ-PKIKRK-RSIRVRPRHTVERPEERSCTDTP-LHRGDSS--LLPFQMDNKYPAQLR 1851
+VL+ PK +R +S + T+ P+ T+T + G S +P + P+Q
Sbjct: 963 RVLKDPKQRRFFKSNDIYELFTLSSPDGSQGTETSAIFAGTGSDVQVPKRHKTSSPSQGT 1022
Query: 1852 TDTEMKAHGESNSLRHDQSE---PS---SKSRRN-LPSRKIANAPKSRASLKTGRLNCMP 1904
T + +H + R+ S P+ S+S N L SR AN S S +N
Sbjct: 1023 TRPSL-SHSTDSGNRNTTSVNGLPNNNTSESPNNKLESRSNANGLTSSTSKALSSMNSPQ 1081
Query: 1905 GHTE 1908
H E
Sbjct: 1082 KHRE 1085
Score = 41 (19.5 bits), Expect = 3.2e-48, Sum P(5) = 3.2e-48
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 837 ARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSI 887
+R R + K ++ ++ S ++ K+ +L + D + + ML Q+T++
Sbjct: 273 SRKRPIMK--KKTTKKHSGETTPNKEKKNGSLSSKDKKLQKRMLKLQRTAL 321
Score = 38 (18.4 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 1781 QQSGSWTHDRDEGEDEQVLQPKIKRK 1806
Q SG+ T ++ +D ++++ + +K
Sbjct: 1236 QSSGTMTKSAEKCKDAEIVKKSVVKK 1261
>UNIPROTKB|J9PA15 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
EMBL:AAEX03004382 EMBL:AAEX03004383 EMBL:AAEX03004384
EMBL:AAEX03004387 EMBL:AAEX03004388 Ensembl:ENSCAFT00000048702
Uniprot:J9PA15
Length = 1555
Score = 571 (206.1 bits), Expect = 3.4e-48, Sum P(4) = 3.4e-48
Identities = 116/278 (41%), Positives = 169/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR G LR+YQ +GL W++++Y KLNGILADEMGLGKT+Q ++L+A+L KGN+GP
Sbjct: 617 PLLLR-GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 675
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ EL +W PS + Y GA+ +R F+V +T+Y+ ++
Sbjct: 676 HLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 735
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + +W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN
Sbjct: 736 QDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLM 795
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + + + E ++ RLH++L PF+LRR
Sbjct: 796 HFLMPHVFQSHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRV 847
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 1270
DVE +P K V+RCR+S Q +YD A T +
Sbjct: 848 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK 885
Score = 55 (24.4 bits), Expect = 3.4e-48, Sum P(4) = 3.4e-48
Identities = 24/117 (20%), Positives = 46/117 (39%)
Query: 548 SNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPV 607
+ ++A+ SS+ +E++ +D+ + G S + + + QA
Sbjct: 487 TEAEEARPEDSSSQSESAEEQSEEEEDEHSEEEETSGSSESEESESEESEESGSQSQADE 546
Query: 608 SSVKSDQ-EVECGLLRTQQQSDFPADRGKSV-APQVSACDAVQVKKPAQATTALQPK 662
+ D VE L R ++QS+ G P + ++ A A +LQPK
Sbjct: 547 EEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTATLGPKKEITDIAAAAESLQPK 603
Score = 54 (24.1 bits), Expect = 4.4e-48, Sum P(4) = 4.4e-48
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
+Q+Q+E A + Q K R+ ++ + +K ++ KQ + + RKK L+ H
Sbjct: 175 EQRQKEERARREEQ-AKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLH 232
Score = 45 (20.9 bits), Expect = 3.7e-47, Sum P(4) = 3.7e-47
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
+++ G AE Q R +E ++ + ++SLP + G + +P + S +
Sbjct: 306 EEQQEGNDAETQRREIELLRREGELPLEELLRSLPPQ-LLGGPSSPSRTPSSRD-SDIRD 363
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEV 616
P G EE+ + V VK V
Sbjct: 364 GPEE----GGEEEPSQVIQVKPSPSV 385
Score = 41 (19.5 bits), Expect = 9.7e-47, Sum P(4) = 9.7e-47
Identities = 26/104 (25%), Positives = 37/104 (35%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
Q R+ K + HL+ + S QSL + A KA SP SA +
Sbjct: 218 QSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPLA---SSKAGSSPCLGSSSAASS 274
Query: 591 EPAPVVVPGKEEQQ-APVSSVKSDQEVECGLLRTQQQSDFPADR 633
P PV E+ P + D E + Q+ +D R
Sbjct: 275 PPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQR 318
Score = 40 (19.1 bits), Expect = 3.4e-48, Sum P(4) = 3.4e-48
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVS 316
+PI+Q+++V++ + + SS P S
Sbjct: 12 LPILQTQMVSDGMTGSNPVSPASSSSPAS 40
Score = 37 (18.1 bits), Expect = 3.4e-48, Sum P(4) = 3.4e-48
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVI 1450
DP P PK + V R + K+E + +
Sbjct: 988 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1015
Score = 37 (18.1 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 207 EQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQ 245
++ Q + G P P TLG + +I ++ Q
Sbjct: 563 DEEQSEADGGSGPPTPGPTATLGPKKEITDIAAAAESLQ 601
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 571 (206.1 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 194/642 (30%), Positives = 303/642 (47%)
Query: 992 QPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049
QP + A GTL YQ+ GL W+ + + ILADEMGLGKT+Q + + L +
Sbjct: 721 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 780
Query: 1050 YGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLV 1105
GP L+ P + ++NW+ E W P + Y G KD R+ + FS E A+K
Sbjct: 781 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKA 840
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDX 1165
+ + + ++ I ID+A R + L D + +R + L N
Sbjct: 841 FKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGY 898
Query: 1166 XXXXXXXXXXXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
P + + FH F P ++ +++ + K+ I +LH +L
Sbjct: 899 KIDHKLLLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLL 956
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
P MLRR DV ++P K +++R +S +Q Y +I L + E R N
Sbjct: 957 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQ 1011
Query: 1285 IYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDR 1335
+ +L N M+L+K CNHP L +P + S L+K+ GKL +L +
Sbjct: 1012 V-------SLLNIMMDLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKASGKLMLLQK 1063
Query: 1336 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395
+L KL+ GHRVL+FS MTK+LD+LE++L + Y RIDG + R+ AI FN+H +
Sbjct: 1064 MLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAHGA 1123
Query: 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYM 1452
F FLLS RA G G+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + +
Sbjct: 1124 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1183
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512
+V ++I+ K + + V L K GS+ ++I ++ + + N
Sbjct: 1184 ASVEERITQVAKRKMMLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENE 1238
Query: 1513 GRF---DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVE 1563
G D H + L +++ ++T DV ++ E V + + R ED++E
Sbjct: 1239 GENKEEDSSVIHYDNEAIARLLDRNQDATEDT--DVQNMNEYLSSFKVAQYVVREEDKIE 1296
Query: 1564 LFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSK 1604
+++ E EE D K LR ++ +A NL K
Sbjct: 1297 ---EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK 1335
Score = 47 (21.6 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 22/83 (26%), Positives = 34/83 (40%)
Query: 346 AKARPTVSPSPL-GSTTSAAXXXXXXXISL-QQFSVHGRDNQVPSRQPVAIGNGLPPIHP 403
AK R + +P GS + A ++ +Q S V S P+A +G PP P
Sbjct: 187 AKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA-----AVSSATPIA-PSG-PPTLP 239
Query: 404 PQTSLNMTPGVDQPLPVKNSSGP 426
P + ++ P + K GP
Sbjct: 240 PPPAADIQPPPIRRAKTKEGKGP 262
Score = 42 (19.8 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 19/68 (27%), Positives = 27/68 (39%)
Query: 1822 ERSCTD-TPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNS--LRHD--QSEPSSKS 1876
E+S T+ TP RG+ + Q + P D +A LR + EP S
Sbjct: 1635 EKSATESTPGERGEEKPMDGQEHRERPEGETGDLGKRAEDVKGDRELRSGPPRDEPRSNG 1694
Query: 1877 RRNLPSRK 1884
RR + K
Sbjct: 1695 RREEKAEK 1702
Score = 38 (18.4 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 202 GEKQMEQPQQQVSDQKGEPKPPSQQTLGGQ 231
GE + P Q +D G P P + L G+
Sbjct: 514 GEPPVAMPAPQQAD--GNPDAPPPRPLQGR 541
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 548 (198.0 bits), Expect = 4.0e-48, Sum P(2) = 4.0e-48
Identities = 109/293 (37%), Positives = 179/293 (61%)
Query: 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
R++ QP+ ++ G LRDYQ+ GL W++ LY N +NGILADEMGLGKT+Q ++L+AYL E++
Sbjct: 182 RLLTQPACIQ-GKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYR 240
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTT 1107
G GPH+++ P + L NW +E+ ++ P + + ++G ++R + + + A KF++ VT+
Sbjct: 241 GINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTS 300
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXX 1167
+E + +++ L + W+YIIIDEA R+K+ S+L++ + + RLL+TGTPLQN+
Sbjct: 301 FEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHE 360
Query: 1168 XXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
PEVF + + F +WF Q G ++D E ++ +LH++L PF
Sbjct: 361 LWALLNFLLPEVFSSAETFDEWF----QISG-----ENDQQE------VVQQLHKVLRPF 405
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV 1280
+LRR DVE LPPK +L+ MS +Q Y + V+ E++R+
Sbjct: 406 LLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRL 458
Score = 447 (162.4 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 109/251 (43%), Positives = 151/251 (60%)
Query: 1205 DDWLETE---KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 1261
D+W + + ++ +LH++L PF+LRR DVE LPPK +L+ MS +Q Y
Sbjct: 380 DEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY- 438
Query: 1262 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY---PYFSDL 1318
KA L+ D E ++ K L N M+LRK CNHP L P
Sbjct: 439 --KAL--LQKDLEVVNGGGER---------KRLLNIAMQLRKCCNHPYLFQGAEPGPPYT 485
Query: 1319 SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
+ D LV + GK+ +LD++L KL+ RVL+FS MT+LLDILE+YL +R Y RIDG T
Sbjct: 486 TGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNT 545
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
++R+++I +N S+ F+FLLS RA G G+NL +AD VI+YD D NP+ + QA RA
Sbjct: 546 GGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRA 605
Query: 1439 HRIGQKREVKV 1449
HRIGQK+EV+V
Sbjct: 606 HRIGQKKEVQV 616
Score = 47 (21.6 bits), Expect = 4.0e-48, Sum P(2) = 4.0e-48
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 554 QAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSS-VKS 612
+A SS + + ++A +D + V + + ++ AP P +++ PV +
Sbjct: 13 EAYSSEEEEQV-NDQANVEEDDDELEAVARSAGSDEEDVAPDEAPVSDDEVVPVEDDAEE 71
Query: 613 DQEVE 617
D+E E
Sbjct: 72 DEEDE 76
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 551 (199.0 bits), Expect = 4.6e-48, Sum P(3) = 4.6e-48
Identities = 156/460 (33%), Positives = 233/460 (50%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
GTL YQ+ GL W+ + + ILADEMGLGKTVQ + + L + + GP+L+ P
Sbjct: 672 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 731
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYD 1114
+ ++NW+ E W P + Y G K+ RS + FS E A++ V + +
Sbjct: 732 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 791
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 1174
+ + ++ I ID+A + L D + +R + L N
Sbjct: 792 KFHVLLTSYELITIDQAILGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLT 849
Query: 1175 XXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233
P + + FH F P ++ +++ + K+ I +LH +L P MLRR
Sbjct: 850 GTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLK 907
Query: 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293
DV ++P K +++R +S +Q Y +I ++ + +V +
Sbjct: 908 ADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------S 955
Query: 1294 LNNRCMELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGH 1345
L N M+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GH
Sbjct: 956 LLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGH 1015
Query: 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405
RVL+FS MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS R
Sbjct: 1016 RVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTR 1075
Query: 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445
A G G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ +
Sbjct: 1076 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1115
Score = 49 (22.3 bits), Expect = 4.6e-48, Sum P(3) = 4.6e-48
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 576 AAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGK 635
AA + V + VT P V P + Q P+ K+ + G+ + + S +GK
Sbjct: 182 AAAAAVAAAVETVTIAPPLAVSPQQPPQPVPIRKAKTKEGKGPGVRKKIKGSKDAKKKGK 241
Score = 47 (21.6 bits), Expect = 4.6e-48, Sum P(3) = 4.6e-48
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 824 LLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNK 863
L +A+W R+ + A+ +R++++ K KDD + K
Sbjct: 611 LKQAYWGHRELMLGED---ARLPKRLVKKGKKLKDDKQEK 647
Score = 37 (18.1 bits), Expect = 8.2e-47, Sum P(3) = 8.2e-47
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 707 DLLSEEGLEVLQKKRSENLKK 727
D EE + + +KK+S+ LK+
Sbjct: 12 DYFPEEPVGLPKKKKSKKLKE 32
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 559 (201.8 bits), Expect = 7.0e-48, Sum P(6) = 7.0e-48
Identities = 159/466 (34%), Positives = 238/466 (51%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
GTL YQ+ GL W+ + + ILADEMGLGKTVQ + + L + + GP+L+ P
Sbjct: 630 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 689
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYD 1114
+ ++NW+ E W P + Y G K+ RS + FS E A++ V + +
Sbjct: 690 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 749
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 1174
+ + ++ I ID+A + L D + +R + L N
Sbjct: 750 KFHVLLTSYELITIDQAILGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLT 807
Query: 1175 XXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233
P + + FH F P ++ +++ + K+ I +LH +L P MLRR
Sbjct: 808 GTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLK 865
Query: 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293
DV ++P K +++R +S +Q Y +I ++ + +V +
Sbjct: 866 ADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------S 913
Query: 1294 LNNRCMELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGH 1345
L N M+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GH
Sbjct: 914 LLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGH 973
Query: 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405
RVL+FS MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS R
Sbjct: 974 RVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTR 1033
Query: 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
A G G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V +IY
Sbjct: 1034 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV-MIY 1078
Score = 51 (23.0 bits), Expect = 7.0e-48, Sum P(6) = 7.0e-48
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 1762 PDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPE 1821
P++L + E+ + +D + S H R +G D + K + K I + E E
Sbjct: 1560 PEQLPKEEVLPEKEKILDKLEL-SLIHSRGDGSDFRPDDTKAEEKEPIETQQNGDKEEDE 1618
Query: 1822 E 1822
E
Sbjct: 1619 E 1619
Score = 49 (22.3 bits), Expect = 7.0e-48, Sum P(6) = 7.0e-48
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1629 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
+G + +K NY + E E+ + SD ++ Y +
Sbjct: 1273 KGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSI 1306
Score = 49 (22.3 bits), Expect = 7.0e-48, Sum P(6) = 7.0e-48
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 576 AAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGK 635
AA + V + VT P + P + Q P+ K+ + G+ + + S +GK
Sbjct: 140 AAAAAVAAAVETVTIAPPLTISPQQAPQPVPIRKAKTKEGKGPGVRKKVKGSKDAKKKGK 199
Score = 44 (20.5 bits), Expect = 7.0e-48, Sum P(6) = 7.0e-48
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 824 LLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNK 863
L +A+W R+ + A+ +R++++ K +DD + K
Sbjct: 569 LKQAYWGHRELMLGED---ARLPKRLVKKGKKLRDDKQEK 605
Score = 44 (20.5 bits), Expect = 1.6e-47, Sum P(5) = 1.6e-47
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 1419 VIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLE 1477
VI DP+ P P + + + K E ++ YM+ + +K E+++ V+ E
Sbjct: 1474 VISSDPNTPVPASPAHLLPAPPGLPDKLEAQLGYMDEKEPGVQKPKKPPEIQALDGVEGE 1533
Query: 1478 DDLAGKD 1484
D D
Sbjct: 1534 DKHESSD 1540
Score = 42 (19.8 bits), Expect = 7.0e-48, Sum P(6) = 7.0e-48
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 1516 DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1563
+Q T + + L + Q V + ++EV R I + E+ V+
Sbjct: 1201 NQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVD 1248
Score = 42 (19.8 bits), Expect = 7.2e-47, Sum P(4) = 7.2e-47
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 1424 PDPNPKNEEQAVARAHRIGQKREVKVIYMEAV-----VDKISSHQKED-ELRSGGTVDLE 1477
P P +E+ + +I K E+ +I+ D + +KE E + G D E
Sbjct: 1558 PSPEQLPKEEVLPEKEKILDKLELSLIHSRGDGSDFRPDDTKAEEKEPIETQQNG--DKE 1615
Query: 1478 DDLAGK 1483
+D GK
Sbjct: 1616 EDEEGK 1621
Score = 41 (19.5 bits), Expect = 3.2e-47, Sum P(5) = 3.2e-47
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 1540 ETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATI 1599
+ +++ S +V + + R ED VE +++ E EE D K LR ++ +
Sbjct: 1211 QNMNEYLSSFKVAQYVVREEDGVE---EVEREIIKQEENVDPDYWEKLLRHHYEQQQEDL 1267
Query: 1600 A-NLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 1656
A NL K K I N D+ + + E + E+ D EYS S DE
Sbjct: 1268 ARNLGK--GKRIRKQVNYN-DASQEDQEWQ-----------DELSDNQSEYSIGSEDE 1311
Score = 40 (19.1 bits), Expect = 5.7e-47, Sum P(6) = 5.7e-47
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 1626 ERKRG-PKGKKYPNYKEVDDEIGEYSEASSD 1655
E++ G K KK P + +D GE SSD
Sbjct: 1510 EKEPGVQKPKKPPEIQALDGVEGEDKHESSD 1540
Score = 37 (18.1 bits), Expect = 1.2e-46, Sum P(6) = 1.2e-46
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 414 VDQPLPVKNSSGPENSQMQ 432
+D+P P SG E+S+ +
Sbjct: 480 MDEPPPFDYGSGDEDSKSE 498
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 545 (196.9 bits), Expect = 9.5e-48, Sum P(2) = 9.5e-48
Identities = 109/273 (39%), Positives = 165/273 (60%)
Query: 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK 1047
R PS ++ GTLRDYQ+ GL WM+SLY N +NGILADEMGLGKT+Q +AL+ YL ++
Sbjct: 94 RFEESPSYVKGGTLRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYR 153
Query: 1048 GNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTT 1107
GPH+++VP + L NW +E +W+PS+ + +G KD R+ + +++V VT+
Sbjct: 154 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRAVCLIGDKDARAAFIRDVMMPGEWDVCVTS 213
Query: 1108 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXX 1167
YE ++ ++S K +W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 214 YEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 273
Query: 1168 XXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227
P+VF++ F WF T N D +K ++ RLH +L+PF
Sbjct: 274 LWALLNFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPF 318
Query: 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
+LRR +VE SLPPK + + +S +Q Y
Sbjct: 319 LLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWY 351
Score = 470 (170.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 119/310 (38%), Positives = 174/310 (56%)
Query: 1201 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 1255
++ADD W +T+ + ++ RLH +L+PF+LRR +VE SLPPK + + +S +
Sbjct: 287 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKAEVEKSLPPKKEVKIYLGLSKM 346
Query: 1256 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 1310
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 347 QR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 394
Query: 1311 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369
PY +D L+ + GK+ +LD++L KL+ G RVLLFS MT+LLDILE+Y WR
Sbjct: 395 PGPPYTTDTH---LITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGY 451
Query: 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 1429
Y R+DG T E+RE AI FN+ +S FIF+LS RA G G+NL +AD VI+YD D NP+
Sbjct: 452 EYCRLDGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQ 511
Query: 1430 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 1480
+ QA+ RAHRIGQK+ V+V + E +V++ + D + + G +D + +
Sbjct: 512 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 571
Query: 1481 AGKDRYIGSI 1490
KD + I
Sbjct: 572 LAKDEMLQMI 581
Score = 44 (20.5 bits), Expect = 9.5e-48, Sum P(2) = 9.5e-48
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 1514 RFDQRTTHEERRMTLET 1530
R D +T HEER ++T
Sbjct: 455 RLDGQTPHEEREEAIDT 471
Score = 41 (19.5 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1358
C +L ++RI+ +++R R+ ++ K LD
Sbjct: 818 CNELQDIERIMAQIERGEARIQRRISIKKALD 849
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 318 (117.0 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 88/275 (32%), Positives = 140/275 (50%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P+ L+A LR YQ GL W+ L +L GILAD+MGLGKT+Q +A + + K GP
Sbjct: 625 PTQLQA-ELRPYQQQGLNWLCFLKEYQLGGILADDMGLGKTIQTLAFLLKQKQLKSAAGP 683
Query: 1053 HL---IIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYE 1109
HL II P +++ NW E K+ PS++ GA QR L ++ +F+V+VTTY
Sbjct: 684 HLPSLIICPTSLVGNWAKEAAKFAPSLTLAVIHGA--QRGPLLAR---LSEFDVVVTTYP 738
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
++ D +++I++DEAQ++K+ ++ +++ + + +L LTGTPL+N
Sbjct: 739 LMVRDNDYYQAQAFEHIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELK 798
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P + F+ F ++ G D + + KV L Q + PF+L
Sbjct: 799 SLMDFCLPGLLGTTAYFNKEFRNRIERYG-----DSE----QVKV-----LSQRIAPFVL 844
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIK 1264
RR +V LPPK I + Q +Y+ I+
Sbjct: 845 RRTKAEVVTELPPKTEIYQSLELEKDQRNLYESIR 879
Score = 281 (104.0 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 91/278 (32%), Positives = 139/278 (50%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
L Q + PF+LRR +V LPPK I + Q +Y+ ++R+ E + R
Sbjct: 835 LSQRIAPFVLRRTKAEVVTELPPKTEIYQSLELEKDQRNLYE------SIRLSMEKKIRE 888
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK 1339
+ + L+ ++LR+ C P L L + VK+ KL L + L +
Sbjct: 889 LFATQGVAGSHIEFLD-ALLKLRQACCDPRL-----VKLEQAQKVKNNAKLNWLSQNLPE 942
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399
+ + G ++L+FS T +L ++EE LQ ++ Y ++ G T L R+ I F D+ +
Sbjct: 943 MVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL--RQVQIDKFQEGDTP--V 998
Query: 1400 FLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV---KVIYMEAVV 1456
FL+S++A G GLNL +ADTVI YDP NP E QA RAHRIGQ+ V K+I V
Sbjct: 999 FLISLKAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVE 1058
Query: 1457 DKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
+KI Q+ + G D + G + GS + L+
Sbjct: 1059 EKIQEMQQHKQ----GLADSILEGKGNGAWQGSADELL 1092
Score = 37 (18.1 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 8/38 (21%), Positives = 24/38 (63%)
Query: 1755 GSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDE 1792
G++ +++ E+++ + ++ DS ++ + +G+W DE
Sbjct: 1055 GTVEEKI-QEMQQHKQGLA-DSILEGKGNGAWQGSADE 1090
Score = 37 (18.1 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 798 LMRQVQTSQKAMREKQLKS 816
L + +QT +++KQLKS
Sbjct: 661 LGKTIQTLAFLLKQKQLKS 679
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 318 (117.0 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 88/275 (32%), Positives = 140/275 (50%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P+ L+A LR YQ GL W+ L +L GILAD+MGLGKT+Q +A + + K GP
Sbjct: 625 PTQLQA-ELRPYQQQGLNWLCFLKEYQLGGILADDMGLGKTIQTLAFLLKQKQLKSAAGP 683
Query: 1053 HL---IIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYE 1109
HL II P +++ NW E K+ PS++ GA QR L ++ +F+V+VTTY
Sbjct: 684 HLPSLIICPTSLVGNWAKEAAKFAPSLTLAVIHGA--QRGPLLAR---LSEFDVVVTTYP 738
Query: 1110 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 1169
++ D +++I++DEAQ++K+ ++ +++ + + +L LTGTPL+N
Sbjct: 739 LMVRDNDYYQAQAFEHIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELK 798
Query: 1170 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
P + F+ F ++ G D + + KV L Q + PF+L
Sbjct: 799 SLMDFCLPGLLGTTAYFNKEFRNRIERYG-----DSE----QVKV-----LSQRIAPFVL 844
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIK 1264
RR +V LPPK I + Q +Y+ I+
Sbjct: 845 RRTKAEVVTELPPKTEIYQSLELEKDQRNLYESIR 879
Score = 281 (104.0 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 91/278 (32%), Positives = 139/278 (50%)
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1279
L Q + PF+LRR +V LPPK I + Q +Y+ ++R+ E + R
Sbjct: 835 LSQRIAPFVLRRTKAEVVTELPPKTEIYQSLELEKDQRNLYE------SIRLSMEKKIRE 888
Query: 1280 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK 1339
+ + L+ ++LR+ C P L L + VK+ KL L + L +
Sbjct: 889 LFATQGVAGSHIEFLD-ALLKLRQACCDPRL-----VKLEQAQKVKNNAKLNWLSQNLPE 942
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399
+ + G ++L+FS T +L ++EE LQ ++ Y ++ G T L R+ I F D+ +
Sbjct: 943 MVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL--RQVQIDKFQEGDTP--V 998
Query: 1400 FLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV---KVIYMEAVV 1456
FL+S++A G GLNL +ADTVI YDP NP E QA RAHRIGQ+ V K+I V
Sbjct: 999 FLISLKAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVE 1058
Query: 1457 DKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
+KI Q+ + G D + G + GS + L+
Sbjct: 1059 EKIQEMQQHKQ----GLADSILEGKGNGAWQGSADELL 1092
Score = 37 (18.1 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 8/38 (21%), Positives = 24/38 (63%)
Query: 1755 GSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDE 1792
G++ +++ E+++ + ++ DS ++ + +G+W DE
Sbjct: 1055 GTVEEKI-QEMQQHKQGLA-DSILEGKGNGAWQGSADE 1090
Score = 37 (18.1 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 798 LMRQVQTSQKAMREKQLKS 816
L + +QT +++KQLKS
Sbjct: 661 LGKTIQTLAFLLKQKQLKS 679
>UNIPROTKB|F6XHF3 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
Ensembl:ENSCAFT00000026363 EMBL:AAEX03004382 EMBL:AAEX03004383
EMBL:AAEX03004384 EMBL:AAEX03004387 EMBL:AAEX03004388
Uniprot:F6XHF3
Length = 1823
Score = 571 (206.1 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 116/278 (41%), Positives = 169/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR G LR+YQ +GL W++++Y KLNGILADEMGLGKT+Q ++L+A+L KGN+GP
Sbjct: 617 PLLLR-GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 675
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ EL +W PS + Y GA+ +R F+V +T+Y+ ++
Sbjct: 676 HLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 735
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + +W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN
Sbjct: 736 QDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLM 795
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + + + E ++ RLH++L PF+LRR
Sbjct: 796 HFLMPHVFQSHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRV 847
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 1270
DVE +P K V+RCR+S Q +YD A T +
Sbjct: 848 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK 885
Score = 55 (24.4 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 24/117 (20%), Positives = 46/117 (39%)
Query: 548 SNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPV 607
+ ++A+ SS+ +E++ +D+ + G S + + + QA
Sbjct: 487 TEAEEARPEDSSSQSESAEEQSEEEEDEHSEEEETSGSSESEESESEESEESGSQSQADE 546
Query: 608 SSVKSDQ-EVECGLLRTQQQSDFPADRGKSV-APQVSACDAVQVKKPAQATTALQPK 662
+ D VE L R ++QS+ G P + ++ A A +LQPK
Sbjct: 547 EEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTATLGPKKEITDIAAAAESLQPK 603
Score = 54 (24.1 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
+Q+Q+E A + Q K R+ ++ + +K ++ KQ + + RKK L+ H
Sbjct: 175 EQRQKEERARREEQ-AKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLH 232
Score = 45 (20.9 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
+++ G AE Q R +E ++ + ++SLP + G + +P + S +
Sbjct: 306 EEQQEGNDAETQRREIELLRREGELPLEELLRSLPPQ-LLGGPSSPSRTPSSRD-SDIRD 363
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEV 616
P G EE+ + V VK V
Sbjct: 364 GPEE----GGEEEPSQVIQVKPSPSV 385
Score = 41 (19.5 bits), Expect = 3.1e-46, Sum P(4) = 3.1e-46
Identities = 26/104 (25%), Positives = 37/104 (35%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
Q R+ K + HL+ + S QSL + A KA SP SA +
Sbjct: 218 QSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPLA---SSKAGSSPCLGSSSAASS 274
Query: 591 EPAPVVVPGKEEQQ-APVSSVKSDQEVECGLLRTQQQSDFPADR 633
P PV E+ P + D E + Q+ +D R
Sbjct: 275 PPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQR 318
Score = 40 (19.1 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVS 316
+PI+Q+++V++ + + SS P S
Sbjct: 12 LPILQTQMVSDGMTGSNPVSPASSSSPAS 40
Score = 37 (18.1 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVI 1450
DP P PK + V R + K+E + +
Sbjct: 988 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1015
Score = 37 (18.1 bits), Expect = 8.4e-47, Sum P(3) = 8.4e-47
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 207 EQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQ 245
++ Q + G P P TLG + +I ++ Q
Sbjct: 563 DEEQSEADGGSGPPTPGPTATLGPKKEITDIAAAAESLQ 601
>UNIPROTKB|E2R6G6 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 Ensembl:ENSCAFT00000026363
Uniprot:E2R6G6
Length = 1825
Score = 571 (206.1 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 116/278 (41%), Positives = 169/278 (60%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
P +LR G LR+YQ +GL W++++Y KLNGILADEMGLGKT+Q ++L+A+L KGN+GP
Sbjct: 617 PLLLR-GQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 675
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
HLIIVP +V++NW+ EL +W PS + Y GA+ +R F+V +T+Y+ ++
Sbjct: 676 HLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 735
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
D + +W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN
Sbjct: 736 QDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLM 795
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P VF + + F +WFS P G + + + E ++ RLH++L PF+LRR
Sbjct: 796 HFLMPHVFQSHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRV 847
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 1270
DVE +P K V+RCR+S Q +YD A T +
Sbjct: 848 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTK 885
Score = 55 (24.4 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 24/117 (20%), Positives = 46/117 (39%)
Query: 548 SNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPV 607
+ ++A+ SS+ +E++ +D+ + G S + + + QA
Sbjct: 487 TEAEEARPEDSSSQSESAEEQSEEEEDEHSEEEETSGSSESEESESEESEESGSQSQADE 546
Query: 608 SSVKSDQ-EVECGLLRTQQQSDFPADRGKSV-APQVSACDAVQVKKPAQATTALQPK 662
+ D VE L R ++QS+ G P + ++ A A +LQPK
Sbjct: 547 EEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTATLGPKKEITDIAAAAESLQPK 603
Score = 54 (24.1 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 770 DQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAH 828
+Q+Q+E A + Q K R+ ++ + +K ++ KQ + + RKK L+ H
Sbjct: 175 EQRQKEERARREEQ-AKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLH 232
Score = 45 (20.9 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
+++ G AE Q R +E ++ + ++SLP + G + +P + S +
Sbjct: 306 EEQQEGNDAETQRREIELLRREGELPLEELLRSLPPQ-LLGGPSSPSRTPSSRD-SDIRD 363
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEV 616
P G EE+ + V VK V
Sbjct: 364 GPEE----GGEEEPSQVIQVKPSPSV 385
Score = 41 (19.5 bits), Expect = 3.1e-46, Sum P(4) = 3.1e-46
Identities = 26/104 (25%), Positives = 37/104 (35%)
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
Q R+ K + HL+ + S QSL + A KA SP SA +
Sbjct: 218 QSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPLA---SSKAGSSPCLGSSSAASS 274
Query: 591 EPAPVVVPGKEEQQ-APVSSVKSDQEVECGLLRTQQQSDFPADR 633
P PV E+ P + D E + Q+ +D R
Sbjct: 275 PPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQR 318
Score = 40 (19.1 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVS 316
+PI+Q+++V++ + + SS P S
Sbjct: 12 LPILQTQMVSDGMTGSNPVSPASSSSPAS 40
Score = 37 (18.1 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVI 1450
DP P PK + V R + K+E + +
Sbjct: 988 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1015
Score = 37 (18.1 bits), Expect = 8.4e-47, Sum P(3) = 8.4e-47
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 207 EQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQ 245
++ Q + G P P TLG + +I ++ Q
Sbjct: 563 DEEQSEADGGSGPPTPGPTATLGPKKEITDIAAAAESLQ 601
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 550 (198.7 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 156/460 (33%), Positives = 233/460 (50%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
GTL YQ+ GL W+ + + ILADEMGLGKTVQ + + L + + GP+L+ P
Sbjct: 698 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 757
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYD 1114
+ ++NW+ E W P + Y G K+ RS + FS E A++ V + +
Sbjct: 758 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 817
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 1174
+ + ++ I ID+A + L D + +R + L N
Sbjct: 818 KFHVLLTSYELITIDQAILGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLT 875
Query: 1175 XXPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233
P + + FH F P ++ +++ + K+ I +LH +L P MLRR
Sbjct: 876 GTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLK 933
Query: 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293
DV ++P K +++R +S +Q Y +I ++ + +V +
Sbjct: 934 ADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------S 981
Query: 1294 LNNRCMELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGH 1345
L N M+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GH
Sbjct: 982 LLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGH 1041
Query: 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405
RVL+FS MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS R
Sbjct: 1042 RVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTR 1101
Query: 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445
A G G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ +
Sbjct: 1102 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQTK 1141
Score = 48 (22.0 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 576 AAVSPVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGK 635
AA + V + VT P V P + Q P+ K+ + G+ + + S +GK
Sbjct: 208 AAAAAVAAAVETVTISPPLAVSPPQVPQPVPIRKAKTKEGKGPGVRKKIKGSKDGKKKGK 267
Score = 45 (20.9 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 824 LLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNK 863
L +A+W R+ + + K R+L++ K +DD + K
Sbjct: 637 LKQAYWGHRELMLGEDTRLPK---RLLKKGKKLRDDKQEK 673
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 429 (156.1 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 110/355 (30%), Positives = 188/355 (52%)
Query: 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPL 1161
++L+TTY + KL KV W+Y ++DE ++++ +S ++ + + R++L+GTP+
Sbjct: 442 HILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPI 501
Query: 1162 QNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221
QN+ P F F P G NA + ++T K + L
Sbjct: 502 QNNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYA-NATNIQVQTGYKCAVA--LR 558
Query: 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRV 1280
++ P++LRR DV LP K +VL C+++ Q + Y +++ ++ ++ ++ KR V
Sbjct: 559 DLISPYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQI--QNGKRNV 616
Query: 1281 QKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFL-VKSCGKLWILDRILIK 1339
++ + LRK CNHP L + D+ K GK+ ++ ++L+
Sbjct: 617 ----LFGIDI----------LRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLL 662
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQ-----LVYRRIDGTTSLEDRESAIVDFNSHD 1394
+ G++ LLF+ ++LDILEE++ + L Y R+DGTT+++ R+S + FN+
Sbjct: 663 WHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNES 722
Query: 1395 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
D +FLL+ R G G+NL A+ +II+DPD NP + QA RA RIGQKREV +
Sbjct: 723 FD--VFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSI 775
Score = 169 (64.5 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 41/125 (32%), Positives = 64/125 (51%)
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
L +YQ +QW+ LY GI+ DEMGLGKT+QV+A IA L GP LI+ P
Sbjct: 297 LFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAALHHSGLLTGPVLIVCPAT 356
Query: 1061 VLVNWKSELHKWLPSVSCI--YYVG---AKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR 1115
V+ W +E W P + + + +G A DQ+ ++ ++ L N + + + +
Sbjct: 357 VMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLENLIMNSKPSDFSYEDWKN 416
Query: 1116 SKLSK 1120
S +K
Sbjct: 417 STRTK 421
Score = 47 (21.6 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 528 VNNQDRVSGKI-AEDQLRHLESNGKDAQAVSSSNVQSLPKE 567
+NN R+S K DQ+++L+S+ + ++QS KE
Sbjct: 76 LNNTTRISVKQNLRDQIKNLQSDDIERVLKDIDDIQSRIKE 116
Score = 40 (19.1 bits), Expect = 8.8e-47, Sum P(3) = 8.8e-47
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 551 KDAQAVSS-SNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTKEPAPVV-VPGKEEQQAPVS 608
K A V++ SN+QSL +EE K A+ + +T++ + K+ + +
Sbjct: 34 KIANDVTNFSNLQSLQQEETRLERSKTALQRYVNKKNHLTRKLNNTTRISVKQNLRDQIK 93
Query: 609 SVKSDQEVE 617
+++SD ++E
Sbjct: 94 NLQSD-DIE 101
>UNIPROTKB|H0YMN5 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 PROSITE:PS51413
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC020661 GO:GO:0016817 ChiTaRS:INO80
HGNC:HGNC:26956 EMBL:AC021753 ProteinModelPortal:H0YMN5 SMR:H0YMN5
Ensembl:ENST00000558357 Bgee:H0YMN5 Uniprot:H0YMN5
Length = 1104
Score = 546 (197.3 bits), Expect = 1.7e-47, Sum P(2) = 1.7e-47
Identities = 124/352 (35%), Positives = 196/352 (55%)
Query: 968 APRDGSSVNKYYSLAHA---VNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGIL 1024
A + G+ + YSLA+ E + QP++ G L+ YQ+ G+ W+ +LY +NGIL
Sbjct: 484 ANKSGTGFGESYSLANPSIRAGEDIP-QPTIFN-GKLKGYQLKGMNWLANLYEQGINGIL 541
Query: 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA 1084
ADEMGLGKTVQ +AL+A+L E + +GP LII P + L NW E +++P + Y G
Sbjct: 542 ADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGN 601
Query: 1085 KDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138
R R +SQ+ + F+V++T+Y+ ++ D +V W+Y+++DEAQ +K
Sbjct: 602 PHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSS 661
Query: 1139 SVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEG 1198
SV + L +++C+ RLLLTGTP+QN P +FD+ + F++WFS+ +
Sbjct: 662 SVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA 721
Query: 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 1258
+A D E + + RLH IL+PFMLRR +DVE L K+ I++ C++++ Q
Sbjct: 722 ENKSAID---ENQ-----LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKL 773
Query: 1259 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
+Y +K ++ ED + + +L N M+ RK CNHP L
Sbjct: 774 LYQALKN----KISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPEL 821
Score = 44 (20.5 bits), Expect = 1.7e-47, Sum P(2) = 1.7e-47
Identities = 28/127 (22%), Positives = 55/127 (43%)
Query: 793 RQRVELMRQVQTSQKAMREK-QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
R++V L + KA ++K +++ + L AH +++ R A + E + R
Sbjct: 277 RRKVWLSIVKKELPKANKQKASARNLFLTNSRKL-AHQCMKEVRRAALQAQKNCKETLPR 335
Query: 852 EFSKRKDDDRN-KRMEALKNNDVERYREMLLEQQT--SIPGDAAERYAVLSSFLTQTEEY 908
K+ K+ E ++ +R + LEQ+ +A + L+ +TQTE Y
Sbjct: 336 ARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELY 395
Query: 909 LYKLGSK 915
+ + K
Sbjct: 396 AHFMSRK 402
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 549 (198.3 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
Identities = 112/268 (41%), Positives = 164/268 (61%)
Query: 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
PS ++ G LRDYQI GL W++SLY N +NGILADEMGLGKT+Q +AL+ YL ++ GP
Sbjct: 179 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 238
Query: 1053 HLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM 1112
H+++VP + L NW +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++
Sbjct: 239 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVI 298
Query: 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXX 1172
++S K W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+
Sbjct: 299 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 358
Query: 1173 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P+VF++ F WF T N D +K ++ RLH +L+PF+LRR
Sbjct: 359 NFLLPDVFNSADDFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRI 403
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
DVE SLPPK I + +S +Q Y
Sbjct: 404 KTDVEKSLPPKKEIKIYLGLSKMQREWY 431
Score = 470 (170.5 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 125/348 (35%), Positives = 188/348 (54%)
Query: 1201 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 1255
++ADD W +T+ + ++ RLH +L+PF+LRR DVE SLPPK I + +S +
Sbjct: 367 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKM 426
Query: 1256 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 1310
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 427 QR---EWYTKILMKDIDVLNSSGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 474
Query: 1311 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369
PY +D + +V + GK+ LD++L +++ G RVL+FS MT+LLDILE+Y WR
Sbjct: 475 PGPPYTTD---EHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGY 531
Query: 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 1429
Y R+DG T E+RE AI FN+ +S FIF+LS RA G G+NL SAD VI+YD D NP+
Sbjct: 532 EYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 591
Query: 1430 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 1480
+ QA+ RAHRIGQK+ V+V + E +V++ + D + + G +D + +
Sbjct: 592 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 651
Query: 1481 AGKDRYIGSIEGLIRNNIQQYKIDMADE--VINAGRFDQRTTHEERRM 1526
K+ + I + + ++ DE V R +++T RM
Sbjct: 652 LAKEEMLQMIRHGATHVFACKESELTDEDIVTILERGEKKTAEMNERM 699
Score = 39 (18.8 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 1514 RFDQRTTHEERRMTLE 1529
R D +T HEER ++
Sbjct: 535 RLDGQTPHEEREEAID 550
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 537 (194.1 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 110/281 (39%), Positives = 168/281 (59%)
Query: 980 SLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL 1039
S A V R PS ++ G LRDYQ+ GL W++SLY N +NGILADEMGLGKT+Q ++L
Sbjct: 158 SKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISL 217
Query: 1040 IAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099
+ Y+ ++ GPH+++VP + L NW SE KW+P++ + +G K+QR+ +
Sbjct: 218 LGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPG 277
Query: 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGT 1159
+++V VT+YE ++ ++S K +W+Y++IDEA R+K+ +S L+ + ++ RLLLTGT
Sbjct: 278 EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGT 337
Query: 1160 PLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219
PLQN+ P+VF++ F WF T+N D +K ++ R
Sbjct: 338 PLQNNLHELWSLLNFLLPDVFNSADDFDSWFD--------TNNCLGD----QK---LVER 382
Query: 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 1260
LH +L PF+LRR DVE SLPPK + + +S +Q Y
Sbjct: 383 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWY 423
Score = 451 (163.8 bits), Expect = 5.4e-38, Sum P(2) = 5.4e-38
Identities = 118/331 (35%), Positives = 178/331 (53%)
Query: 1201 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 1255
++ADD W +T + ++ RLH +L PF+LRR DVE SLPPK + + +S +
Sbjct: 359 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 418
Query: 1256 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 1310
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 419 QR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 466
Query: 1311 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369
PY +D+ LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR
Sbjct: 467 PGPPYTTDMH---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNY 523
Query: 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 1429
Y R+DG T ++R+ +I +N +S F+F+LS RA G G+NL +AD VI+YD D NP+
Sbjct: 524 EYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQ 583
Query: 1430 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 1480
+ QA+ RAHRIGQ + V+V E +V++ + D + + G VD +
Sbjct: 584 VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK 643
Query: 1481 AGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1511
GKD + I + + ++ DE I+
Sbjct: 644 IGKDEMLQMIRHGATHVFASKESEITDEDID 674
Score = 51 (23.0 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 1523 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 1581
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 911 QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENV-Y 969
Query: 1582 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 1632
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGPK
Sbjct: 970 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1028
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 563 (203.2 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 160/487 (32%), Positives = 244/487 (50%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
G L YQ+ GL W+ ++N + ILADEMGLGKTVQ + + LM+ GP LI P
Sbjct: 600 GKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAAP 659
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYD 1114
+ ++NW+ E +W P + YVG +D R L FS A++ + +
Sbjct: 660 LSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTENM 719
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 1174
+ + ++ I +D+ L D + +R + L L N+
Sbjct: 720 KFHVLLTSYETINMDKTILSSIEWGALVVD-EAHRLKNNQSLFFKNL-NEYTIHYRVLLT 777
Query: 1175 XXPEVFDNRKAFH--DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P + + FH ++ S+ + A+ + + E + I +LH +L P MLRR
Sbjct: 778 GTPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEISKEDQ---IEKLHNLLGPHMLRRL 834
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
DV +P K +++R +SA+Q W K T D + K
Sbjct: 835 KADVLTGMPSKSELIVRVELSAMQKK---WYKNILTRNFDALNVKN---------GGTQM 882
Query: 1293 TLNNRCMELRKTCNHPLLNYPYFSDLSKD--------FLVKSCGKLWILDRILIKLQRTG 1344
+L N MEL+K CNHP L + K+ L+K+ GK +L ++L KL+ G
Sbjct: 883 SLMNVLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGG 942
Query: 1345 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404
HRVL+FS MT++LDI+E+ ++ Y RIDG+ + R+ AI +N+ + FIFLLS
Sbjct: 943 HRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLST 1002
Query: 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISS 1461
RA G G+NL +ADTVIIYD D NP N+ QA +RAHR+GQK +V + + ++V +KI+S
Sbjct: 1003 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITS 1062
Query: 1462 HQKEDEL 1468
K+ L
Sbjct: 1063 VAKKKML 1069
Score = 47 (21.6 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 27/93 (29%), Positives = 39/93 (41%)
Query: 562 QSLPKEEAYAGDDKAAVS-PVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGL 620
Q P ++ G AVS PV SA TK + + + AP SDQE E
Sbjct: 150 QGKPVQKQARGSKTPAVSTPVIPPRSAPTKTRS--ARRKRRDSDAP----DSDQEFEA-F 202
Query: 621 LRTQQQSDFPADRGKSVAPQVSACDAVQVKKPA 653
++ Q+Q + + K A A + + KK A
Sbjct: 203 IKQQEQLEDDLVKDKEDARIKRAAEREEKKKGA 235
Score = 39 (18.8 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 203 EKQMEQPQQQVSDQKG-EPKPPSQQTLGGQG 232
E+ E+ +Q+ D+ G + S + GG+G
Sbjct: 27 EETEEEEEQEQGDEAGPSERKRSSRKKGGKG 57
Score = 38 (18.4 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 543 LRHLESNGKDA 553
LRH SNG DA
Sbjct: 613 LRHCWSNGTDA 623
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 563 (203.2 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 160/487 (32%), Positives = 244/487 (50%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
G L YQ+ GL W+ ++N + ILADEMGLGKTVQ + + LM+ GP LI P
Sbjct: 600 GKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAAP 659
Query: 1059 NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYD 1114
+ ++NW+ E +W P + YVG +D R L FS A++ + +
Sbjct: 660 LSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTENM 719
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 1174
+ + ++ I +D+ L D + +R + L L N+
Sbjct: 720 KFHVLLTSYETINMDKTILSSIEWGALVVD-EAHRLKNNQSLFFKNL-NEYTIHYRVLLT 777
Query: 1175 XXPEVFDNRKAFH--DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232
P + + FH ++ S+ + A+ + + E + I +LH +L P MLRR
Sbjct: 778 GTPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEISKEDQ---IEKLHNLLGPHMLRRL 834
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
DV +P K +++R +SA+Q W K T D + K
Sbjct: 835 KADVLTGMPSKSELIVRVELSAMQKK---WYKNILTRNFDALNVKN---------GGTQM 882
Query: 1293 TLNNRCMELRKTCNHPLLNYPYFSDLSKD--------FLVKSCGKLWILDRILIKLQRTG 1344
+L N MEL+K CNHP L + K+ L+K+ GK +L ++L KL+ G
Sbjct: 883 SLMNVLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGG 942
Query: 1345 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404
HRVL+FS MT++LDI+E+ ++ Y RIDG+ + R+ AI +N+ + FIFLLS
Sbjct: 943 HRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLST 1002
Query: 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISS 1461
RA G G+NL +ADTVIIYD D NP N+ QA +RAHR+GQK +V + + ++V +KI+S
Sbjct: 1003 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITS 1062
Query: 1462 HQKEDEL 1468
K+ L
Sbjct: 1063 VAKKKML 1069
Score = 47 (21.6 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 27/93 (29%), Positives = 39/93 (41%)
Query: 562 QSLPKEEAYAGDDKAAVS-PVGQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGL 620
Q P ++ G AVS PV SA TK + + + AP SDQE E
Sbjct: 150 QGKPVQKQARGSKTPAVSTPVIPPRSAPTKTRS--ARRKRRDSDAP----DSDQEFEA-F 202
Query: 621 LRTQQQSDFPADRGKSVAPQVSACDAVQVKKPA 653
++ Q+Q + + K A A + + KK A
Sbjct: 203 IKQQEQLEDDLVKDKEDARIKRAAEREEKKKGA 235
Score = 39 (18.8 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 203 EKQMEQPQQQVSDQKG-EPKPPSQQTLGGQG 232
E+ E+ +Q+ D+ G + S + GG+G
Sbjct: 27 EETEEEEEQEQGDEAGPSERKRSSRKKGGKG 57
Score = 38 (18.4 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 543 LRHLESNGKDA 553
LRH SNG DA
Sbjct: 613 LRHCWSNGTDA 623
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 561 (202.5 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 207/702 (29%), Positives = 338/702 (48%)
Query: 991 RQPSMLRA--GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG 1048
RQP L A GTL YQ+ GL W+ + + ILADEMGLGKTVQ A+ Y + +G
Sbjct: 707 RQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEG 765
Query: 1049 NY-GPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNV 1103
+ GP L+ P + ++NW+ E W P + + YVG KD R+ + FS E A++
Sbjct: 766 HSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGK 825
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK-DRESVLARDLDRYRC-QRRL--LLTGT 1159
+ + + + ++ I ID A D ++ + R + Q + +L G
Sbjct: 826 KASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 885
Query: 1160 PLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNAD---DDWLETEKKVII 1216
LQ+ E+F F P + HN + +++ + K+ I
Sbjct: 886 SLQHKLLLTGTPLQNNLEELFHLLN-----FLTPER----FHNLEGFLEEFADIAKEDQI 936
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
+LH +L P MLRR DV ++P K +++R +S +Q Y +I L + E
Sbjct: 937 -KKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYI-----LTRNFEAL 990
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS-DLSK--------DFLVKSC 1327
R N + +L N M+L+K CNHP L +P + + K L+++
Sbjct: 991 NARGGGNQV-------SLLNVVMDLKKCCNHPYL-FPVAAMEAPKMPNGMYDGSALIRAS 1042
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GKL +L ++L L+ GHRVL+FS MTK+LD+LE++L+ Y RIDG + R+ AI
Sbjct: 1043 GKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAI 1102
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN+ + F FLLS RA G G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V
Sbjct: 1103 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1162
Query: 1448 KV---IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQ-Y 1501
+ + +V ++I+ K+ + + V L K + ++ +++ ++ +
Sbjct: 1163 MIYRFVTRASVEERITQVAKKKMMLTHLVV--RPGLGSKTGSMSKQELDDILKFGTEELF 1220
Query: 1502 KIDMADEV-INAGRFDQRTTHEERRMTLETLL-HDEERYQET----VHDVPSLQEVNRMI 1555
K + D N D H + + +E LL +++ ++T +++ S +V + +
Sbjct: 1221 KDEATDGGGDNKEGEDSSVIHYDDK-AIERLLDRNQDETEDTELQGMNEYLSSFKVAQYV 1279
Query: 1556 ARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIA-NLSKKPSKNILFGS 1614
R E+E+ ++++ E EE D K LR ++ +A NL K K I
Sbjct: 1280 VR-EEEMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGK--GKRIR--K 1334
Query: 1615 NIGVDSGEIETERKRGPKGKKYPNY----KEVDDEIGEYSEA 1652
+ + G E + + +Y +E D++ E SEA
Sbjct: 1335 QVNYNDGSQEDRDWQDDQSDNQSDYSVASEEGDEDFDERSEA 1376
Score = 46 (21.3 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1629 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
+G + +K NY + E ++ + SD ++ Y V
Sbjct: 1328 KGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDYSV 1361
Score = 43 (20.2 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGM 233
E+ + +++ E+ ++ D EPK S Q L GM
Sbjct: 118 EKKSKSKRKEEEEEEDEDDDSKEPKS-SAQLLEDWGM 153
Score = 38 (18.4 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 394 IGNGLPPIHP 403
+ N LPP HP
Sbjct: 24 LNNSLPPPHP 33
WARNING: HSPs involving 320 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1953 1738 0.00090 125 3 11 23 0.43 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 570
No. of states in DFA: 629 (67 KB)
Total size of DFA: 667 KB (2292 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 169.20u 0.12s 169.32t Elapsed: 00:00:11
Total cpu time: 169.34u 0.13s 169.47t Elapsed: 00:00:11
Start: Fri May 10 05:42:07 2013 End: Fri May 10 05:42:18 2013
WARNINGS ISSUED: 2