Query 000169
Match_columns 1953
No_of_seqs 621 out of 3266
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 21:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 2E-159 4E-164 1466.2 59.7 965 703-1811 128-1131(1157)
2 KOG0385 Chromatin remodeling c 100.0 7E-110 2E-114 1005.8 47.6 511 988-1560 155-670 (971)
3 KOG0384 Chromodomain-helicase 100.0 2E-100 4E-105 957.0 35.3 508 987-1559 357-887 (1373)
4 KOG0388 SNF2 family DNA-depend 100.0 1E-93 2.3E-98 852.3 43.8 465 987-1517 555-1182(1185)
5 KOG0391 SNF2 family DNA-depend 100.0 1.6E-93 3.5E-98 875.9 36.8 485 991-1534 607-1429(1958)
6 PLN03142 Probable chromatin-re 100.0 1.3E-88 2.8E-93 878.7 56.4 510 988-1562 158-671 (1033)
7 KOG0389 SNF2 family DNA-depend 100.0 1E-88 2.2E-93 825.5 42.1 488 989-1534 387-929 (941)
8 KOG0387 Transcription-coupled 100.0 4.9E-85 1.1E-89 794.8 42.8 469 991-1512 197-681 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 9.3E-83 2E-87 793.0 41.7 495 991-1531 967-1496(1549)
10 KOG0390 DNA repair protein, SN 100.0 1.1E-66 2.5E-71 651.0 42.2 435 998-1454 236-705 (776)
11 COG0553 HepA Superfamily II DN 100.0 6.9E-64 1.5E-68 647.1 39.7 469 997-1512 335-845 (866)
12 KOG1015 Transcription regulato 100.0 1.4E-63 3E-68 606.4 36.3 478 986-1512 655-1300(1567)
13 KOG1002 Nucleotide excision re 100.0 6.8E-63 1.5E-67 575.1 34.6 465 988-1513 173-773 (791)
14 KOG4439 RNA polymerase II tran 100.0 5.1E-60 1.1E-64 569.4 34.5 467 989-1512 315-881 (901)
15 KOG1016 Predicted DNA helicase 100.0 9.5E-52 2.1E-56 495.8 27.6 482 999-1536 253-892 (1387)
16 PRK04914 ATP-dependent helicas 100.0 4.9E-50 1.1E-54 519.1 41.1 410 999-1454 151-603 (956)
17 KOG1000 Chromatin remodeling p 100.0 1.7E-49 3.7E-54 465.3 33.4 419 1000-1510 198-624 (689)
18 KOG0383 Predicted helicase [Ge 100.0 9.1E-51 2E-55 505.2 8.7 388 990-1410 283-696 (696)
19 KOG0386 Chromatin remodeling c 100.0 4.6E-51 1E-55 506.5 -14.1 918 8-965 14-980 (1157)
20 KOG1001 Helicase-like transcri 100.0 2.1E-45 4.6E-50 462.4 23.4 443 1003-1509 135-670 (674)
21 PF00176 SNF2_N: SNF2 family N 100.0 6.1E-41 1.3E-45 382.5 22.6 280 1004-1310 1-298 (299)
22 TIGR00603 rad25 DNA repair hel 100.0 5.6E-36 1.2E-40 378.7 36.5 332 999-1454 254-605 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 5.6E-33 1.2E-37 359.9 37.7 427 999-1453 14-476 (773)
24 PHA02558 uvsW UvsW helicase; P 100.0 1.6E-28 3.4E-33 305.2 33.8 336 998-1454 112-453 (501)
25 COG1061 SSL2 DNA or RNA helica 100.0 1.7E-28 3.6E-33 300.8 30.9 349 998-1453 34-389 (442)
26 COG1111 MPH1 ERCC4-like helica 100.0 2.8E-27 6.1E-32 283.0 30.9 417 1000-1450 15-477 (542)
27 KOG0298 DEAD box-containing he 100.0 6.4E-29 1.4E-33 316.2 17.4 274 1016-1310 371-690 (1394)
28 PTZ00110 helicase; Provisional 99.9 4.3E-26 9.3E-31 286.1 29.6 317 1000-1451 152-481 (545)
29 PRK11776 ATP-dependent RNA hel 99.9 8.8E-26 1.9E-30 277.4 31.1 312 1000-1451 26-346 (460)
30 TIGR00614 recQ_fam ATP-depende 99.9 2.6E-25 5.7E-30 274.5 30.9 307 1000-1452 11-331 (470)
31 PRK11192 ATP-dependent RNA hel 99.9 7.6E-25 1.6E-29 267.0 33.3 313 1000-1451 23-349 (434)
32 PRK04837 ATP-dependent RNA hel 99.9 2.4E-25 5.3E-30 270.9 28.5 312 1000-1450 30-358 (423)
33 PRK10590 ATP-dependent RNA hel 99.9 3.7E-25 7.9E-30 272.2 30.1 312 1000-1451 23-349 (456)
34 KOG0331 ATP-dependent RNA heli 99.9 4E-25 8.8E-30 270.1 27.3 317 1000-1451 113-445 (519)
35 PRK04537 ATP-dependent RNA hel 99.9 8.7E-25 1.9E-29 275.6 31.0 312 1000-1450 31-360 (572)
36 PRK11634 ATP-dependent RNA hel 99.9 2E-24 4.4E-29 274.5 34.6 314 1000-1452 28-350 (629)
37 PRK01297 ATP-dependent RNA hel 99.9 2.1E-24 4.5E-29 266.6 32.8 313 1000-1450 109-438 (475)
38 PLN00206 DEAD-box ATP-dependen 99.9 1.3E-24 2.9E-29 271.3 29.6 312 1000-1450 143-471 (518)
39 PTZ00424 helicase 45; Provisio 99.9 7.2E-24 1.6E-28 254.7 29.8 313 1000-1450 50-370 (401)
40 KOG0354 DEAD-box like helicase 99.9 5.6E-23 1.2E-27 257.5 37.4 419 999-1451 61-527 (746)
41 PRK11057 ATP-dependent DNA hel 99.9 1.3E-23 2.8E-28 266.9 32.0 304 1000-1451 25-340 (607)
42 KOG0330 ATP-dependent RNA heli 99.9 1.1E-23 2.3E-28 245.2 25.0 314 1000-1454 83-405 (476)
43 TIGR01389 recQ ATP-dependent D 99.9 3.7E-23 8E-28 261.9 31.6 304 1000-1451 13-328 (591)
44 COG0513 SrmB Superfamily II DN 99.9 4.2E-23 9E-28 257.6 28.0 315 1000-1450 51-376 (513)
45 PRK11448 hsdR type I restricti 99.9 1.1E-22 2.4E-27 270.2 31.1 361 999-1459 412-821 (1123)
46 PLN03137 ATP-dependent DNA hel 99.9 1.5E-22 3.3E-27 262.7 31.1 308 999-1452 459-785 (1195)
47 TIGR00643 recG ATP-dependent D 99.9 8.5E-22 1.8E-26 251.3 33.2 308 999-1451 234-563 (630)
48 PRK10917 ATP-dependent DNA hel 99.9 1.6E-21 3.6E-26 250.5 31.1 306 999-1451 260-586 (681)
49 TIGR00580 mfd transcription-re 99.9 2.8E-21 6.2E-26 253.1 31.9 304 999-1451 450-767 (926)
50 TIGR03817 DECH_helic helicase/ 99.9 7E-21 1.5E-25 246.3 33.0 318 1000-1449 36-381 (742)
51 PRK13767 ATP-dependent helicas 99.9 6.7E-21 1.5E-25 250.5 32.8 325 1000-1451 32-395 (876)
52 PRK10689 transcription-repair 99.9 5E-21 1.1E-25 255.3 31.4 304 999-1451 599-916 (1147)
53 KOG0346 RNA helicase [RNA proc 99.9 9.8E-21 2.1E-25 222.8 25.4 273 1327-1642 252-567 (569)
54 KOG0343 RNA Helicase [RNA proc 99.9 2.6E-20 5.7E-25 223.1 24.0 355 1000-1537 91-464 (758)
55 KOG0350 DEAD-box ATP-dependent 99.9 2.5E-21 5.4E-26 230.5 14.7 346 1000-1448 159-534 (620)
56 PRK02362 ski2-like helicase; P 99.9 1.4E-19 3.1E-24 234.7 32.0 310 1000-1446 23-387 (737)
57 KOG1123 RNA polymerase II tran 99.8 8.6E-21 1.9E-25 224.7 16.6 332 999-1454 301-651 (776)
58 KOG0333 U5 snRNP-like RNA heli 99.8 5.5E-20 1.2E-24 219.9 22.1 341 1000-1451 267-621 (673)
59 KOG0345 ATP-dependent RNA heli 99.8 1.9E-19 4.1E-24 213.7 25.6 319 999-1453 27-363 (567)
60 PRK01172 ski2-like helicase; P 99.8 7.4E-19 1.6E-23 226.1 32.5 303 999-1446 21-368 (674)
61 KOG0340 ATP-dependent RNA heli 99.8 1.5E-19 3.3E-24 209.1 23.0 314 1000-1448 29-355 (442)
62 TIGR01587 cas3_core CRISPR-ass 99.8 6.4E-19 1.4E-23 209.5 26.1 296 1022-1452 2-334 (358)
63 KOG0342 ATP-dependent RNA heli 99.8 2.9E-19 6.3E-24 213.6 22.8 314 1000-1449 104-432 (543)
64 KOG0338 ATP-dependent RNA heli 99.8 6.3E-19 1.4E-23 210.1 24.5 309 1000-1445 203-524 (691)
65 PRK00254 ski2-like helicase; P 99.8 2.3E-18 5E-23 223.1 31.8 314 1000-1452 23-384 (720)
66 TIGR03714 secA2 accessory Sec 99.8 1.3E-17 2.9E-22 212.9 36.7 414 1000-1461 68-542 (762)
67 KOG0348 ATP-dependent RNA heli 99.8 2.3E-18 4.9E-23 206.4 26.3 352 1000-1452 159-552 (708)
68 KOG0335 ATP-dependent RNA heli 99.8 4.4E-19 9.6E-24 214.8 20.2 313 1000-1452 96-442 (482)
69 KOG0328 Predicted ATP-dependen 99.8 4.4E-19 9.5E-24 200.2 17.7 306 1003-1447 52-366 (400)
70 TIGR02621 cas3_GSU0051 CRISPR- 99.8 3.5E-18 7.7E-23 219.9 27.5 101 1342-1447 270-383 (844)
71 COG4096 HsdR Type I site-speci 99.8 4.6E-18 9.9E-23 213.4 27.2 356 997-1454 162-546 (875)
72 PRK12898 secA preprotein trans 99.8 1.7E-16 3.8E-21 200.9 37.5 413 998-1460 101-590 (656)
73 TIGR00348 hsdR type I site-spe 99.8 3E-17 6.6E-22 210.9 31.2 374 999-1459 237-654 (667)
74 PRK09200 preprotein translocas 99.8 1.3E-16 2.8E-21 205.4 35.9 411 1001-1461 77-546 (790)
75 COG0514 RecQ Superfamily II DN 99.8 1.8E-17 3.9E-22 206.6 25.7 307 1000-1452 17-335 (590)
76 PRK09401 reverse gyrase; Revie 99.8 5.6E-17 1.2E-21 217.4 29.2 295 998-1442 78-432 (1176)
77 PRK09751 putative ATP-dependen 99.8 7.4E-17 1.6E-21 217.4 29.4 96 1343-1441 243-371 (1490)
78 KOG0341 DEAD-box protein abstr 99.8 2.4E-18 5.3E-23 199.6 12.8 310 1000-1450 192-524 (610)
79 TIGR00963 secA preprotein tran 99.8 4.7E-17 1E-21 207.0 24.9 156 1298-1460 354-521 (745)
80 KOG4284 DEAD box protein [Tran 99.7 1.3E-17 2.8E-22 202.3 16.3 313 1001-1446 48-371 (980)
81 COG1200 RecG RecG-like helicas 99.7 5.8E-16 1.3E-20 193.0 28.8 308 999-1452 261-589 (677)
82 KOG0326 ATP-dependent RNA heli 99.7 7.7E-18 1.7E-22 192.5 11.1 317 1002-1461 109-434 (459)
83 PHA02653 RNA helicase NPH-II; 99.7 1.5E-15 3.3E-20 194.3 30.9 325 991-1454 151-512 (675)
84 KOG0336 ATP-dependent RNA heli 99.7 1.2E-16 2.7E-21 186.7 18.8 310 1000-1448 242-566 (629)
85 TIGR03158 cas3_cyano CRISPR-as 99.7 1.5E-15 3.3E-20 182.5 26.3 85 1343-1439 271-357 (357)
86 KOG0339 ATP-dependent RNA heli 99.7 5.6E-16 1.2E-20 185.0 21.6 313 1003-1454 248-573 (731)
87 COG1201 Lhr Lhr-like helicases 99.7 5.8E-15 1.3E-19 189.8 32.4 318 999-1452 21-360 (814)
88 KOG0347 RNA helicase [RNA proc 99.7 8.6E-16 1.9E-20 185.1 20.8 333 1001-1450 204-565 (731)
89 TIGR01054 rgy reverse gyrase. 99.7 2.8E-15 6.2E-20 201.4 27.8 314 998-1427 76-410 (1171)
90 PRK05580 primosome assembly pr 99.7 2.5E-15 5.5E-20 193.7 25.6 375 999-1452 143-547 (679)
91 KOG0332 ATP-dependent RNA heli 99.7 1E-15 2.2E-20 178.5 19.1 115 1328-1447 316-436 (477)
92 PF04851 ResIII: Type III rest 99.7 3.5E-16 7.6E-21 166.3 14.0 154 1000-1161 3-183 (184)
93 COG1205 Distinct helicase fami 99.7 8.6E-15 1.9E-19 191.7 28.0 317 1000-1449 70-417 (851)
94 TIGR01970 DEAH_box_HrpB ATP-de 99.7 1.9E-14 4.1E-19 187.9 29.7 106 1343-1454 208-334 (819)
95 cd00079 HELICc Helicase superf 99.7 6.1E-16 1.3E-20 156.1 12.1 120 1328-1450 12-131 (131)
96 PRK14701 reverse gyrase; Provi 99.6 3.9E-15 8.4E-20 203.9 22.9 342 998-1447 77-449 (1638)
97 TIGR00595 priA primosomal prot 99.6 1.9E-14 4.1E-19 180.2 26.8 93 1357-1452 271-379 (505)
98 PRK13104 secA preprotein trans 99.6 2.4E-13 5.2E-18 175.7 35.3 418 1000-1461 82-592 (896)
99 PRK11664 ATP-dependent RNA hel 99.6 5.5E-14 1.2E-18 183.8 29.9 106 1343-1454 211-337 (812)
100 KOG0334 RNA helicase [RNA proc 99.6 4.7E-15 1E-19 190.1 19.5 121 1327-1451 597-717 (997)
101 COG1204 Superfamily II helicas 99.6 1.9E-14 4.1E-19 186.5 23.2 149 1000-1160 31-190 (766)
102 PRK09694 helicase Cas3; Provis 99.6 2.5E-13 5.4E-18 178.0 31.8 109 1332-1444 549-665 (878)
103 KOG0344 ATP-dependent RNA heli 99.6 2.9E-14 6.3E-19 174.5 20.4 321 1000-1452 158-493 (593)
104 PRK12906 secA preprotein trans 99.6 2.2E-12 4.9E-17 166.1 35.2 156 1299-1461 390-558 (796)
105 PRK12904 preprotein translocas 99.6 3E-12 6.6E-17 165.5 35.7 412 998-1461 79-578 (830)
106 COG4889 Predicted helicase [Ge 99.6 1.5E-14 3.4E-19 179.4 13.2 157 999-1160 160-350 (1518)
107 smart00487 DEXDc DEAD-like hel 99.6 8.2E-14 1.8E-18 147.3 16.7 166 998-1170 6-180 (201)
108 KOG0327 Translation initiation 99.5 7.9E-14 1.7E-18 164.4 16.6 306 1002-1447 50-363 (397)
109 TIGR00631 uvrb excinuclease AB 99.5 3.2E-13 7E-18 173.3 23.4 118 1326-1447 424-546 (655)
110 cd00046 DEXDc DEAD-like helica 99.5 1.7E-13 3.6E-18 136.7 13.9 136 1021-1160 2-144 (144)
111 COG1197 Mfd Transcription-repa 99.5 2.5E-12 5.5E-17 168.1 28.4 305 1000-1450 594-909 (1139)
112 PF00271 Helicase_C: Helicase 99.5 6.2E-14 1.3E-18 132.4 7.9 78 1362-1442 1-78 (78)
113 KOG0351 ATP-dependent DNA heli 99.5 8.8E-13 1.9E-17 172.8 21.1 310 1000-1454 264-592 (941)
114 COG4098 comFA Superfamily II D 99.5 7.5E-12 1.6E-16 145.8 26.3 309 997-1452 94-414 (441)
115 PRK13107 preprotein translocas 99.5 1.9E-11 4.1E-16 158.1 32.6 419 1000-1461 82-596 (908)
116 KOG0337 ATP-dependent RNA heli 99.5 3.6E-13 7.7E-18 159.5 15.0 320 979-1446 30-360 (529)
117 PRK11131 ATP-dependent RNA hel 99.5 4.3E-12 9.4E-17 169.8 26.1 104 1343-1454 285-409 (1294)
118 PRK05298 excinuclease ABC subu 99.5 1.4E-11 3E-16 158.9 30.0 118 1326-1447 428-550 (652)
119 PRK12899 secA preprotein trans 99.4 2.6E-10 5.7E-15 148.0 36.2 156 1299-1461 518-686 (970)
120 PRK12900 secA preprotein trans 99.4 2.8E-10 6E-15 148.1 36.2 129 1326-1461 580-716 (1025)
121 KOG0352 ATP-dependent DNA heli 99.4 2.1E-11 4.6E-16 144.3 22.2 322 1003-1452 23-360 (641)
122 COG1202 Superfamily II helicas 99.4 1.3E-11 2.9E-16 150.0 20.6 309 1000-1453 216-550 (830)
123 TIGR01967 DEAH_box_HrpA ATP-de 99.4 2E-11 4.4E-16 164.0 23.2 104 1343-1454 278-402 (1283)
124 smart00490 HELICc helicase sup 99.4 1.7E-12 3.7E-17 120.9 8.3 81 1359-1442 2-82 (82)
125 PF00270 DEAD: DEAD/DEAH box h 99.3 1.7E-11 3.7E-16 129.9 15.7 156 1003-1166 2-167 (169)
126 KOG0952 DNA/RNA helicase MER3/ 99.3 7E-11 1.5E-15 151.4 23.5 299 1015-1444 122-479 (1230)
127 cd00268 DEADc DEAD-box helicas 99.3 2.8E-11 6E-16 133.0 16.6 155 1000-1161 21-185 (203)
128 COG1203 CRISPR-associated heli 99.3 7.9E-10 1.7E-14 144.6 29.2 327 999-1452 194-548 (733)
129 KOG0353 ATP-dependent DNA heli 99.3 2.1E-10 4.5E-15 133.9 19.5 313 999-1454 93-467 (695)
130 PRK12326 preprotein translocas 99.2 1.7E-08 3.8E-13 128.9 36.5 414 998-1462 76-553 (764)
131 TIGR01407 dinG_rel DnaQ family 99.2 7.4E-09 1.6E-13 137.7 29.7 111 1333-1449 662-809 (850)
132 KOG0951 RNA helicase BRR2, DEA 99.1 2.7E-09 5.9E-14 138.4 21.2 159 1018-1182 324-504 (1674)
133 PRK13103 secA preprotein trans 99.1 7.4E-08 1.6E-12 125.7 33.0 156 1299-1461 399-596 (913)
134 COG0556 UvrB Helicase subunit 99.1 1.7E-08 3.6E-13 123.7 24.2 109 1332-1443 431-547 (663)
135 COG1110 Reverse gyrase [DNA re 99.1 1.3E-08 2.9E-13 131.2 24.1 128 998-1134 80-215 (1187)
136 KOG0329 ATP-dependent RNA heli 99.0 5.9E-09 1.3E-13 117.9 16.0 125 1002-1135 66-198 (387)
137 COG0610 Type I site-specific r 99.0 1.6E-08 3.4E-13 135.5 22.0 159 1000-1165 244-418 (962)
138 PRK12903 secA preprotein trans 99.0 5.3E-07 1.1E-11 117.1 34.5 407 998-1461 76-544 (925)
139 KOG1513 Nuclear helicase MOP-3 98.9 1.7E-08 3.7E-13 126.2 15.9 246 992-1263 257-537 (1300)
140 PF11496 HDA2-3: Class II hist 98.9 3.3E-08 7.1E-13 117.2 16.1 206 1245-1454 5-243 (297)
141 KOG0349 Putative DEAD-box RNA 98.8 1.1E-08 2.3E-13 121.8 10.1 97 1343-1442 504-603 (725)
142 KOG0947 Cytoplasmic exosomal R 98.8 1.1E-06 2.4E-11 113.0 27.5 142 998-1160 295-444 (1248)
143 PF13872 AAA_34: P-loop contai 98.7 1E-07 2.3E-12 112.3 14.7 233 996-1262 33-302 (303)
144 PRK08074 bifunctional ATP-depe 98.7 2.1E-06 4.5E-11 115.7 28.6 113 1332-1447 739-886 (928)
145 TIGR00604 rad3 DNA repair heli 98.7 1.4E-06 3.1E-11 114.2 25.8 73 999-1071 9-82 (705)
146 TIGR03117 cas_csf4 CRISPR-asso 98.7 2.3E-06 5.1E-11 110.2 26.4 79 1005-1084 2-86 (636)
147 COG1198 PriA Primosomal protei 98.7 1.5E-06 3.2E-11 112.9 24.6 151 1000-1160 198-359 (730)
148 CHL00122 secA preprotein trans 98.7 2.3E-05 5E-10 102.8 34.6 365 998-1413 74-490 (870)
149 COG1199 DinG Rad3-related DNA 98.7 3.9E-06 8.4E-11 109.0 28.0 105 1341-1450 476-613 (654)
150 PRK07246 bifunctional ATP-depe 98.6 5.2E-06 1.1E-10 110.5 28.1 89 1332-1426 635-725 (820)
151 COG4581 Superfamily II RNA hel 98.6 2.4E-06 5.2E-11 113.4 21.9 159 997-1192 116-282 (1041)
152 PRK12901 secA preprotein trans 98.6 9.4E-05 2E-09 98.1 35.4 130 1325-1461 609-746 (1112)
153 PRK12902 secA preprotein trans 98.5 8.6E-05 1.9E-09 97.6 34.2 373 998-1414 83-506 (939)
154 KOG0949 Predicted helicase, DE 98.5 2.3E-05 4.9E-10 101.5 25.4 161 1001-1173 512-682 (1330)
155 TIGR00596 rad1 DNA repair prot 98.4 3.2E-06 7E-11 111.6 17.8 79 1099-1178 6-92 (814)
156 KOG0953 Mitochondrial RNA heli 98.4 2.5E-06 5.4E-11 105.4 14.9 107 1342-1452 356-475 (700)
157 PRK11747 dinG ATP-dependent DN 98.4 0.00013 2.8E-09 96.2 30.8 90 1330-1426 520-616 (697)
158 COG1643 HrpA HrpA-like helicas 98.3 3.5E-05 7.5E-10 101.9 22.9 105 1344-1454 259-385 (845)
159 PF02399 Herpes_ori_bp: Origin 98.3 1.9E-05 4.1E-10 102.6 19.4 113 1329-1452 268-386 (824)
160 PRK15483 type III restriction- 98.2 1E-05 2.2E-10 107.5 15.4 171 1020-1197 60-279 (986)
161 KOG0920 ATP-dependent RNA heli 98.1 0.00015 3.3E-09 96.0 22.8 111 1329-1442 396-533 (924)
162 KOG0948 Nuclear exosomal RNA h 98.1 2.4E-05 5.2E-10 99.2 14.0 141 999-1160 128-276 (1041)
163 KOG0922 DEAH-box RNA helicase 98.1 0.00037 8.1E-09 88.8 23.9 106 1346-1454 260-388 (674)
164 KOG0950 DNA polymerase theta/e 98.1 5.5E-05 1.2E-09 98.7 16.3 153 1000-1164 223-391 (1008)
165 PF07652 Flavi_DEAD: Flaviviru 98.0 4E-05 8.8E-10 82.6 11.9 125 1022-1160 7-136 (148)
166 smart00489 DEXDc3 DEAD-like he 98.0 5.5E-05 1.2E-09 89.9 14.1 73 1000-1072 8-84 (289)
167 smart00488 DEXDc2 DEAD-like he 98.0 5.5E-05 1.2E-09 89.9 14.1 73 1000-1072 8-84 (289)
168 TIGR02562 cas3_yersinia CRISPR 98.0 0.0024 5.2E-08 85.7 29.4 167 1002-1168 410-642 (1110)
169 PF13086 AAA_11: AAA domain; P 97.9 7.4E-05 1.6E-09 82.8 11.8 154 1000-1163 1-229 (236)
170 COG3587 Restriction endonuclea 97.9 0.00016 3.4E-09 93.6 15.6 163 1015-1195 70-268 (985)
171 KOG0923 mRNA splicing factor A 97.8 0.023 5E-07 72.8 32.0 102 1345-1451 474-604 (902)
172 PRK14873 primosome assembly pr 97.8 0.00028 6.1E-09 92.3 16.4 123 1029-1160 170-303 (665)
173 COG0653 SecA Preprotein transl 97.7 0.0057 1.2E-07 80.9 25.7 117 1325-1446 410-537 (822)
174 KOG0924 mRNA splicing factor A 97.6 0.0016 3.6E-08 82.6 18.1 81 1368-1454 597-695 (1042)
175 KOG0926 DEAH-box RNA helicase 97.5 0.00072 1.6E-08 86.9 12.6 149 1013-1174 265-438 (1172)
176 PF13871 Helicase_C_4: Helicas 97.3 0.0003 6.6E-09 83.2 5.9 77 1385-1464 52-139 (278)
177 PF08880 QLQ: QLQ; InterPro: 97.3 0.0002 4.3E-09 60.9 3.2 34 473-507 2-35 (37)
178 PRK10536 hypothetical protein; 97.1 0.00095 2.1E-08 78.4 7.1 149 1001-1165 60-217 (262)
179 PF07517 SecA_DEAD: SecA DEAD- 97.0 0.013 2.7E-07 69.6 15.5 120 998-1134 75-209 (266)
180 PF02562 PhoH: PhoH-like prote 96.9 0.0042 9E-08 71.1 10.0 147 1001-1166 5-161 (205)
181 PF07529 HSA: HSA; InterPro: 96.6 0.0071 1.5E-07 57.8 7.9 63 808-870 11-73 (73)
182 PF09848 DUF2075: Uncharacteri 96.5 0.0079 1.7E-07 73.4 9.4 90 1023-1136 5-97 (352)
183 KOG4150 Predicted ATP-dependen 96.5 0.011 2.5E-07 73.8 10.5 116 1326-1444 507-630 (1034)
184 PF13604 AAA_30: AAA domain; P 96.5 0.036 7.7E-07 62.7 13.4 125 1000-1162 1-132 (196)
185 smart00573 HSA domain in helic 96.4 0.011 2.3E-07 57.4 7.6 61 810-870 13-73 (73)
186 KOG0925 mRNA splicing factor A 96.4 0.71 1.5E-05 58.3 24.2 104 1345-1454 254-385 (699)
187 PF13307 Helicase_C_2: Helicas 96.3 0.0088 1.9E-07 65.8 7.1 102 1340-1448 5-144 (167)
188 PF13401 AAA_22: AAA domain; P 96.3 0.0084 1.8E-07 61.7 6.4 114 1019-1160 4-125 (131)
189 COG0553 HepA Superfamily II DN 96.2 0.003 6.6E-08 84.1 3.4 179 1000-1182 84-289 (866)
190 cd00009 AAA The AAA+ (ATPases 96.0 0.062 1.3E-06 54.5 11.3 106 1019-1162 19-131 (151)
191 TIGR00376 DNA helicase, putati 96.0 0.054 1.2E-06 71.4 13.6 67 999-1071 156-223 (637)
192 KOG1802 RNA helicase nonsense 95.7 0.085 1.8E-06 67.9 12.7 133 1000-1142 410-588 (935)
193 TIGR01447 recD exodeoxyribonuc 95.7 0.079 1.7E-06 69.3 13.0 140 1003-1163 148-298 (586)
194 KOG1803 DNA helicase [Replicat 95.6 0.065 1.4E-06 68.7 11.2 64 999-1068 184-248 (649)
195 KOG1132 Helicase of the DEAD s 95.5 0.066 1.4E-06 70.8 11.2 41 999-1039 20-60 (945)
196 PF12340 DUF3638: Protein of u 95.4 0.064 1.4E-06 62.5 9.7 112 999-1113 22-143 (229)
197 cd05516 Bromo_SNF2L2 Bromodoma 95.3 0.0015 3.2E-08 67.4 -3.6 75 1728-1808 20-105 (107)
198 KOG1131 RNA polymerase II tran 95.3 0.058 1.3E-06 67.7 9.1 66 993-1058 9-74 (755)
199 TIGR02881 spore_V_K stage V sp 95.1 0.1 2.2E-06 61.3 10.2 26 1020-1045 43-68 (261)
200 TIGR01448 recD_rel helicase, p 95.1 0.16 3.5E-06 67.9 13.2 134 999-1163 322-455 (720)
201 PRK10875 recD exonuclease V su 94.8 0.17 3.8E-06 66.5 12.0 142 1001-1163 153-304 (615)
202 PRK12723 flagellar biosynthesi 94.7 0.71 1.5E-05 57.9 16.4 157 1021-1203 176-351 (388)
203 PRK04296 thymidine kinase; Pro 94.1 0.14 3.1E-06 57.6 8.0 34 1022-1058 5-38 (190)
204 smart00382 AAA ATPases associa 94.0 0.11 2.4E-06 51.9 6.1 43 1020-1065 3-45 (148)
205 PRK07003 DNA polymerase III su 93.8 0.29 6.3E-06 65.2 11.0 41 1121-1161 118-159 (830)
206 PRK07764 DNA polymerase III su 93.8 0.31 6.7E-06 66.2 11.5 115 1022-1159 40-158 (824)
207 PRK14956 DNA polymerase III su 93.8 0.23 5E-06 63.5 9.8 41 1005-1045 23-66 (484)
208 cd05525 Bromo_ASH1 Bromodomain 93.7 0.0064 1.4E-07 62.9 -3.3 72 1728-1805 21-103 (106)
209 KOG1133 Helicase of the DEAD s 93.7 1.6 3.4E-05 57.4 16.7 353 1066-1440 299-766 (821)
210 COG3421 Uncharacterized protei 93.7 0.062 1.3E-06 68.6 4.4 107 1026-1135 4-125 (812)
211 cd05518 Bromo_polybromo_IV Bro 93.6 0.0066 1.4E-07 62.5 -3.5 75 1727-1807 18-103 (103)
212 PRK14949 DNA polymerase III su 93.6 0.3 6.4E-06 66.2 10.6 40 1121-1160 118-158 (944)
213 cd05520 Bromo_polybromo_III Br 93.6 0.0069 1.5E-07 62.3 -3.4 73 1728-1806 19-102 (103)
214 PLN03025 replication factor C 93.4 0.57 1.2E-05 56.7 11.9 50 1121-1170 98-148 (319)
215 CHL00181 cbbX CbbX; Provisiona 93.2 0.23 5E-06 59.6 8.1 45 1019-1063 59-104 (287)
216 cd05515 Bromo_polybromo_V Brom 93.2 0.0083 1.8E-07 61.8 -3.5 74 1728-1807 19-103 (105)
217 TIGR02880 cbbX_cfxQ probable R 93.0 0.22 4.8E-06 59.6 7.6 40 1019-1058 58-98 (284)
218 PRK12323 DNA polymerase III su 92.9 0.44 9.5E-06 62.9 10.3 23 1023-1045 42-64 (700)
219 KOG0951 RNA helicase BRR2, DEA 92.8 0.24 5.1E-06 67.7 7.9 110 1015-1138 1155-1269(1674)
220 COG1875 NYN ribonuclease and A 92.8 0.26 5.6E-06 60.7 7.6 146 1003-1164 231-391 (436)
221 PRK12402 replication factor C 92.5 0.38 8.3E-06 57.7 8.7 38 1007-1044 22-61 (337)
222 PRK06526 transposase; Provisio 92.1 0.35 7.5E-06 57.3 7.4 53 1007-1070 90-142 (254)
223 TIGR03420 DnaA_homol_Hda DnaA 91.7 1.1 2.5E-05 50.7 10.8 43 1019-1065 38-80 (226)
224 KOG1805 DNA replication helica 91.5 0.93 2E-05 61.2 10.9 147 1000-1162 669-831 (1100)
225 PRK08181 transposase; Validate 91.5 1.2 2.6E-05 53.3 11.1 45 1001-1045 88-132 (269)
226 PRK09112 DNA polymerase III su 91.4 0.55 1.2E-05 58.1 8.5 41 1005-1045 28-71 (351)
227 PRK07994 DNA polymerase III su 91.3 1.3 2.9E-05 58.8 12.1 40 1121-1160 118-158 (647)
228 PRK08691 DNA polymerase III su 91.1 2.2 4.7E-05 57.0 13.7 47 1122-1168 119-166 (709)
229 cd05517 Bromo_polybromo_II Bro 91.1 0.021 4.5E-07 58.8 -3.5 68 1728-1801 19-97 (103)
230 PF13177 DNA_pol3_delta2: DNA 90.8 1.7 3.8E-05 47.9 10.8 134 1005-1163 2-144 (162)
231 PF13892 DBINO: DNA-binding do 90.7 5.1 0.00011 44.0 13.7 64 839-916 70-133 (139)
232 PRK05703 flhF flagellar biosyn 90.6 3.2 6.9E-05 52.8 14.2 152 1021-1201 223-394 (424)
233 PF05876 Terminase_GpA: Phage 90.3 0.39 8.4E-06 62.7 6.0 164 1000-1173 16-192 (557)
234 PRK14962 DNA polymerase III su 90.3 1.3 2.7E-05 57.1 10.4 23 1022-1044 39-61 (472)
235 smart00492 HELICc3 helicase su 90.2 1.6 3.5E-05 47.5 9.7 46 1379-1426 32-79 (141)
236 PRK14960 DNA polymerase III su 90.2 1.7 3.8E-05 57.6 11.6 40 1121-1160 117-157 (702)
237 PTZ00112 origin recognition co 90.0 3.1 6.6E-05 56.7 13.5 52 991-1045 752-807 (1164)
238 COG1484 DnaC DNA replication p 89.9 1.9 4.2E-05 51.1 10.8 66 1002-1070 88-153 (254)
239 cd05519 Bromo_SNF2 Bromodomain 89.7 0.032 7E-07 57.2 -3.5 54 1728-1782 19-73 (103)
240 PRK14952 DNA polymerase III su 89.3 1.9 4.1E-05 56.8 11.0 132 1005-1159 18-156 (584)
241 PHA02533 17 large terminase pr 89.3 3 6.5E-05 54.5 12.7 146 999-1161 58-210 (534)
242 smart00491 HELICc2 helicase su 89.1 1.3 2.9E-05 48.2 8.0 45 1382-1426 32-80 (142)
243 PHA02544 44 clamp loader, smal 89.0 2.8 6.1E-05 50.3 11.5 40 1122-1161 100-141 (316)
244 PF06862 DUF1253: Protein of u 88.8 4.1 8.9E-05 52.1 13.1 115 1327-1443 280-398 (442)
245 PRK07952 DNA replication prote 88.7 3.3 7.2E-05 49.1 11.5 43 1021-1070 101-143 (244)
246 TIGR02928 orc1/cdc6 family rep 88.6 2.4 5.1E-05 51.8 10.6 51 992-1045 13-66 (365)
247 PRK07471 DNA polymerase III su 88.4 0.84 1.8E-05 56.8 6.7 142 1005-1160 24-181 (365)
248 cd05526 Bromo_polybromo_VI Bro 88.2 0.037 8.1E-07 57.9 -4.2 76 1727-1810 21-107 (110)
249 cd05524 Bromo_polybromo_I Brom 88.0 0.044 9.5E-07 57.4 -3.9 74 1728-1807 21-105 (113)
250 PRK05707 DNA polymerase III su 88.0 1.6 3.4E-05 53.7 8.6 45 1000-1045 3-48 (328)
251 TIGR03015 pepcterm_ATPase puta 88.0 1.4 3E-05 51.4 7.8 39 1003-1041 26-65 (269)
252 PRK08084 DNA replication initi 87.9 2.6 5.6E-05 49.2 9.9 25 1020-1044 46-70 (235)
253 PRK14963 DNA polymerase III su 87.8 3.2 6.9E-05 53.9 11.5 41 1005-1045 19-62 (504)
254 PRK11889 flhF flagellar biosyn 87.8 9.3 0.0002 48.6 14.9 154 1021-1204 243-417 (436)
255 PRK08451 DNA polymerase III su 87.5 2.9 6.4E-05 54.6 10.9 38 1122-1159 117-155 (535)
256 PRK14948 DNA polymerase III su 87.3 3.4 7.4E-05 54.9 11.5 41 1005-1045 21-64 (620)
257 PF00448 SRP54: SRP54-type pro 87.3 1.6 3.6E-05 49.8 7.6 130 1023-1175 5-140 (196)
258 PRK14961 DNA polymerase III su 87.1 2.5 5.4E-05 52.4 9.7 40 1005-1044 21-63 (363)
259 PRK06835 DNA replication prote 87.0 3.9 8.4E-05 50.5 11.1 46 1000-1045 160-209 (329)
260 TIGR02768 TraA_Ti Ti-type conj 86.9 4 8.7E-05 55.4 12.1 125 999-1162 351-478 (744)
261 PRK08769 DNA polymerase III su 86.9 2.7 5.8E-05 51.7 9.6 151 1000-1170 4-162 (319)
262 PRK14959 DNA polymerase III su 86.9 3.3 7.2E-05 54.9 11.0 24 1022-1045 41-64 (624)
263 PF13173 AAA_14: AAA domain 86.8 2.8 6E-05 44.1 8.5 38 1122-1160 61-98 (128)
264 PF13245 AAA_19: Part of AAA d 86.7 2 4.3E-05 42.2 6.8 43 1022-1064 13-56 (76)
265 PRK14957 DNA polymerase III su 86.7 3.1 6.8E-05 54.5 10.6 41 1005-1045 21-64 (546)
266 PRK00440 rfc replication facto 86.6 7.5 0.00016 46.4 13.0 39 1122-1160 102-141 (319)
267 cd05522 Bromo_Rsc1_2_II Bromod 86.6 0.066 1.4E-06 55.3 -3.6 58 1723-1782 16-74 (104)
268 PRK14958 DNA polymerase III su 86.3 3.6 7.7E-05 53.6 10.8 43 1121-1163 118-161 (509)
269 PRK14964 DNA polymerase III su 86.3 5.9 0.00013 51.4 12.6 39 1122-1160 116-155 (491)
270 PRK08116 hypothetical protein; 86.2 6.1 0.00013 47.3 11.9 46 1019-1067 114-159 (268)
271 PRK09111 DNA polymerase III su 85.9 3.7 7.9E-05 54.4 10.7 41 1005-1045 29-72 (598)
272 PRK14965 DNA polymerase III su 85.9 5.6 0.00012 52.5 12.3 113 1023-1159 42-157 (576)
273 PRK14951 DNA polymerase III su 85.8 2.7 5.8E-05 55.8 9.4 41 1005-1045 21-64 (618)
274 TIGR00595 priA primosomal prot 85.7 4.3 9.4E-05 52.7 11.1 96 1324-1423 5-101 (505)
275 PRK08727 hypothetical protein; 85.5 7 0.00015 45.7 11.7 24 1022-1045 44-67 (233)
276 KOG0991 Replication factor C, 85.5 0.92 2E-05 53.2 4.4 102 1017-1156 46-148 (333)
277 PF05621 TniB: Bacterial TniB 85.4 3.6 7.9E-05 50.2 9.5 46 1115-1160 138-189 (302)
278 PF06733 DEAD_2: DEAD_2; Inte 85.2 0.73 1.6E-05 51.0 3.4 39 1098-1136 117-159 (174)
279 PRK14950 DNA polymerase III su 85.0 6.6 0.00014 51.9 12.4 40 1005-1044 21-63 (585)
280 PRK14969 DNA polymerase III su 84.9 4.8 0.0001 52.6 11.0 40 1005-1044 21-63 (527)
281 COG0470 HolB ATPase involved i 84.7 3.3 7.1E-05 49.3 8.8 119 1022-1159 27-147 (325)
282 PRK06921 hypothetical protein; 84.4 6.8 0.00015 46.9 11.2 27 1019-1045 117-143 (266)
283 PRK00149 dnaA chromosomal repl 84.3 7.8 0.00017 49.5 12.3 98 1022-1159 151-252 (450)
284 PRK06645 DNA polymerase III su 84.2 5.2 0.00011 52.1 10.8 41 1005-1045 26-69 (507)
285 PHA03333 putative ATPase subun 84.2 6 0.00013 52.8 11.3 149 1003-1161 172-332 (752)
286 PF00004 AAA: ATPase family as 83.9 2.6 5.7E-05 43.1 6.6 36 1023-1064 2-37 (132)
287 PRK14955 DNA polymerase III su 83.9 6.8 0.00015 49.3 11.4 41 1005-1045 21-64 (397)
288 PRK08058 DNA polymerase III su 83.8 4.1 8.8E-05 50.0 9.2 131 1004-1159 10-148 (329)
289 PRK14087 dnaA chromosomal repl 83.7 8.4 0.00018 49.5 12.2 100 1022-1159 144-247 (450)
290 PRK07940 DNA polymerase III su 83.7 4.3 9.3E-05 51.3 9.5 24 1022-1045 39-62 (394)
291 PRK08903 DnaA regulatory inact 83.7 6 0.00013 45.4 10.1 26 1019-1044 42-67 (227)
292 cd01120 RecA-like_NTPases RecA 83.7 7.8 0.00017 40.7 10.1 34 1023-1059 3-36 (165)
293 PRK05580 primosome assembly pr 83.5 6.2 0.00013 53.1 11.4 96 1325-1424 171-267 (679)
294 TIGR00362 DnaA chromosomal rep 83.2 8.5 0.00018 48.4 11.8 98 1022-1159 139-240 (405)
295 PRK06647 DNA polymerase III su 83.0 5.9 0.00013 52.2 10.7 24 1022-1045 41-64 (563)
296 PF00580 UvrD-helicase: UvrD/R 82.8 2.1 4.6E-05 50.2 6.1 119 1001-1132 1-125 (315)
297 PRK14088 dnaA chromosomal repl 82.8 9.7 0.00021 48.7 12.3 36 1022-1058 133-168 (440)
298 PRK07993 DNA polymerase III su 82.5 4.4 9.6E-05 50.0 8.9 136 1000-1159 2-146 (334)
299 PRK13889 conjugal transfer rel 82.5 5.7 0.00012 55.4 10.6 128 998-1164 344-474 (988)
300 TIGR03345 VI_ClpV1 type VI sec 82.3 4.1 8.9E-05 56.1 9.3 40 1005-1044 192-233 (852)
301 cd01124 KaiC KaiC is a circadi 82.2 6.5 0.00014 43.2 9.2 47 1022-1071 2-48 (187)
302 PRK14953 DNA polymerase III su 82.1 8.5 0.00018 49.9 11.5 40 1005-1044 21-63 (486)
303 PRK05563 DNA polymerase III su 81.9 6.8 0.00015 51.6 10.7 24 1022-1045 41-64 (559)
304 PRK00080 ruvB Holliday junctio 81.9 15 0.00032 45.0 12.9 23 1020-1042 52-74 (328)
305 PRK14722 flhF flagellar biosyn 81.8 9.1 0.0002 48.2 11.2 124 1019-1170 137-267 (374)
306 PRK14974 cell division protein 81.7 13 0.00029 46.2 12.4 46 1022-1070 143-192 (336)
307 KOG0952 DNA/RNA helicase MER3/ 81.4 1.3 2.9E-05 60.2 4.0 113 1016-1137 940-1061(1230)
308 KOG0989 Replication factor C, 81.2 2.6 5.6E-05 51.4 5.9 41 1004-1044 40-82 (346)
309 COG0464 SpoVK ATPases of the A 80.9 5.2 0.00011 51.4 9.1 66 1001-1072 250-323 (494)
310 PRK06893 DNA replication initi 80.8 10 0.00023 44.1 10.6 24 1022-1045 42-65 (229)
311 PRK06090 DNA polymerase III su 80.4 6.8 0.00015 48.3 9.3 146 1000-1170 3-157 (319)
312 PF07015 VirC1: VirC1 protein; 80.3 8.9 0.00019 45.4 9.8 54 1028-1084 11-67 (231)
313 cd05521 Bromo_Rsc1_2_I Bromodo 80.2 0.16 3.5E-06 52.8 -3.8 58 1728-1788 20-88 (106)
314 PRK04195 replication factor C 80.1 11 0.00023 48.8 11.3 24 1019-1042 39-62 (482)
315 PRK05642 DNA replication initi 80.1 12 0.00027 43.7 11.0 38 1122-1159 97-138 (234)
316 PRK14086 dnaA chromosomal repl 80.1 13 0.00028 49.6 12.1 98 1022-1159 317-418 (617)
317 KOG0921 Dosage compensation co 79.8 8.6 0.00019 52.1 10.3 137 1014-1160 388-535 (1282)
318 PRK09183 transposase/IS protei 79.6 9.2 0.0002 45.6 9.9 37 1018-1057 101-137 (259)
319 CHL00095 clpC Clp protease ATP 79.6 10 0.00022 52.1 11.6 26 1019-1044 200-225 (821)
320 PRK00411 cdc6 cell division co 79.5 11 0.00025 46.6 11.1 44 1002-1045 35-81 (394)
321 TIGR00678 holB DNA polymerase 79.3 10 0.00022 42.5 9.5 24 1022-1045 17-40 (188)
322 PRK05896 DNA polymerase III su 78.9 14 0.00029 49.3 11.8 41 1005-1045 21-64 (605)
323 PRK06871 DNA polymerase III su 78.9 6.1 0.00013 48.8 8.3 47 1000-1046 2-51 (325)
324 PRK10865 protein disaggregatio 78.5 6.2 0.00013 54.5 9.0 39 1006-1044 184-224 (857)
325 COG3267 ExeA Type II secretory 78.4 6.4 0.00014 47.1 7.9 46 1021-1070 53-104 (269)
326 PF05970 PIF1: PIF1-like helic 78.3 5.1 0.00011 49.9 7.5 62 1000-1064 1-64 (364)
327 PRK06964 DNA polymerase III su 78.2 6.2 0.00013 49.1 8.1 46 1001-1046 2-48 (342)
328 TIGR02397 dnaX_nterm DNA polym 77.9 15 0.00032 44.9 11.2 24 1022-1045 39-62 (355)
329 PRK10917 ATP-dependent DNA hel 77.9 11 0.00024 50.7 11.0 97 1325-1424 291-392 (681)
330 PRK07133 DNA polymerase III su 77.4 14 0.00031 50.0 11.5 24 1022-1045 43-66 (725)
331 TIGR02688 conserved hypothetic 77.0 9.5 0.00021 48.8 9.3 56 1003-1064 193-249 (449)
332 PRK12377 putative replication 76.4 16 0.00035 43.5 10.6 42 1020-1064 102-143 (248)
333 PRK12422 chromosomal replicati 76.3 7.1 0.00015 50.1 8.1 96 1022-1159 144-243 (445)
334 cd01121 Sms Sms (bacterial rad 76.3 10 0.00022 47.7 9.3 63 1006-1071 68-131 (372)
335 TIGR03346 chaperone_ClpB ATP-d 75.7 8.4 0.00018 53.2 9.1 40 1005-1044 178-219 (852)
336 PRK13342 recombination factor 75.7 7.8 0.00017 49.0 8.2 21 1021-1041 38-58 (413)
337 TIGR00708 cobA cob(I)alamin ad 75.6 6.8 0.00015 44.5 6.8 57 1115-1174 90-150 (173)
338 PRK06731 flhF flagellar biosyn 75.0 62 0.0014 39.3 15.0 155 1019-1203 75-250 (270)
339 PRK14954 DNA polymerase III su 74.4 9.6 0.00021 50.9 8.8 41 1005-1045 21-64 (620)
340 cd00984 DnaB_C DnaB helicase C 74.2 11 0.00024 43.4 8.4 44 1021-1066 15-62 (242)
341 KOG0737 AAA+-type ATPase [Post 74.1 9.7 0.00021 47.6 8.1 49 1018-1072 126-174 (386)
342 PRK05986 cob(I)alamin adenolsy 74.0 11 0.00023 43.6 7.9 140 1019-1174 22-168 (191)
343 PRK12727 flagellar biosynthesi 74.0 30 0.00064 45.7 12.7 38 1019-1057 350-387 (559)
344 TIGR02639 ClpA ATP-dependent C 72.2 15 0.00032 50.0 10.1 28 1018-1045 202-229 (731)
345 PRK14873 primosome assembly pr 71.3 17 0.00037 49.0 10.1 94 1326-1423 170-265 (665)
346 PRK06305 DNA polymerase III su 71.2 18 0.00039 46.6 10.0 41 1005-1045 22-65 (451)
347 PRK11034 clpA ATP-dependent Cl 71.0 15 0.00032 50.2 9.6 26 1019-1044 207-232 (758)
348 PRK00771 signal recognition pa 70.8 19 0.00041 46.3 10.0 26 1020-1045 96-121 (437)
349 PRK12724 flagellar biosynthesi 70.7 76 0.0016 41.0 14.9 155 1022-1205 226-400 (432)
350 cd05496 Bromo_WDR9_II Bromodom 70.6 0.41 9E-06 50.8 -3.9 69 1731-1805 21-101 (119)
351 COG0593 DnaA ATPase involved i 70.3 20 0.00042 45.8 9.8 40 1122-1161 175-220 (408)
352 TIGR00643 recG ATP-dependent D 70.2 23 0.00049 47.5 10.9 97 1325-1423 265-365 (630)
353 TIGR03689 pup_AAA proteasome A 70.0 16 0.00034 47.9 9.1 26 1019-1044 216-241 (512)
354 PRK13826 Dtr system oriT relax 69.9 32 0.00069 48.8 12.4 127 999-1164 380-509 (1102)
355 KOG0733 Nuclear AAA ATPase (VC 69.8 1.5E+02 0.0032 40.0 17.1 47 1019-1071 545-591 (802)
356 TIGR01074 rep ATP-dependent DN 69.7 14 0.0003 49.4 8.9 104 1001-1132 2-111 (664)
357 PRK04132 replication factor C 69.4 13 0.00028 51.3 8.4 48 1122-1169 630-678 (846)
358 PF00308 Bac_DnaA: Bacterial d 69.3 38 0.00082 39.5 11.2 37 1122-1158 97-137 (219)
359 TIGR01075 uvrD DNA helicase II 69.2 18 0.00039 49.0 9.8 104 1000-1132 4-113 (715)
360 cd00561 CobA_CobO_BtuR ATP:cor 69.1 23 0.00049 39.8 9.0 125 1023-1164 6-141 (159)
361 PF01443 Viral_helicase1: Vira 69.0 4.7 0.0001 45.9 3.8 41 1121-1164 61-101 (234)
362 cd05497 Bromo_Brdt_I_like Brom 68.2 0.55 1.2E-05 48.9 -3.5 52 1730-1782 20-74 (107)
363 KOG0442 Structure-specific end 68.0 1.1E+02 0.0025 42.0 16.1 179 1000-1196 13-202 (892)
364 PF13481 AAA_25: AAA domain; P 67.9 24 0.00052 39.1 9.0 54 1020-1073 33-93 (193)
365 PRK03992 proteasome-activating 67.9 13 0.00029 46.7 7.8 41 1019-1065 165-205 (389)
366 COG1474 CDC6 Cdc6-related prot 67.7 21 0.00046 44.9 9.3 50 1000-1049 20-72 (366)
367 PF13191 AAA_16: AAA ATPase do 67.6 20 0.00043 39.1 8.1 45 1002-1046 5-51 (185)
368 PHA03368 DNA packaging termina 67.5 16 0.00034 49.0 8.3 103 1023-1136 258-366 (738)
369 cd05505 Bromo_WSTF_like Bromod 66.6 0.83 1.8E-05 46.9 -2.5 51 1731-1782 16-67 (97)
370 TIGR01243 CDC48 AAA family ATP 66.3 19 0.00041 49.0 9.1 39 1019-1063 212-250 (733)
371 cd05508 Bromo_RACK7 Bromodomai 65.8 0.83 1.8E-05 47.1 -2.7 51 1731-1782 18-69 (99)
372 TIGR01242 26Sp45 26S proteasom 65.4 22 0.00048 44.1 8.9 41 1019-1065 156-196 (364)
373 KOG0740 AAA+-type ATPase [Post 65.3 7.4 0.00016 49.6 4.8 46 1021-1072 188-233 (428)
374 KOG0738 AAA+-type ATPase [Post 65.2 77 0.0017 40.5 13.0 46 1020-1072 246-292 (491)
375 PHA03372 DNA packaging termina 64.9 19 0.00042 47.7 8.3 109 1016-1136 200-313 (668)
376 PF03354 Terminase_1: Phage Te 64.8 36 0.00079 44.0 10.9 131 1003-1146 1-145 (477)
377 cd03115 SRP The signal recogni 64.5 35 0.00076 37.5 9.3 24 1022-1045 3-26 (173)
378 PRK07399 DNA polymerase III su 64.4 33 0.00072 42.2 10.0 41 1005-1045 9-52 (314)
379 PRK11823 DNA repair protein Ra 64.3 17 0.00036 46.8 7.7 63 1006-1071 66-129 (446)
380 COG1198 PriA Primosomal protei 64.2 15 0.00033 49.8 7.5 81 1324-1407 225-306 (730)
381 PRK08699 DNA polymerase III su 64.0 27 0.00059 43.2 9.1 45 1001-1045 2-47 (325)
382 cd01122 GP4d_helicase GP4d_hel 64.0 33 0.00072 40.4 9.6 40 1017-1058 28-67 (271)
383 PRK11773 uvrD DNA-dependent he 63.6 19 0.00042 48.8 8.5 104 1000-1132 9-118 (721)
384 PF01695 IstB_IS21: IstB-like 63.4 18 0.00039 40.9 6.9 41 1017-1060 45-85 (178)
385 CHL00176 ftsH cell division pr 63.2 42 0.0009 45.3 11.2 23 1019-1041 216-238 (638)
386 PRK06995 flhF flagellar biosyn 62.9 76 0.0016 41.6 13.1 25 1023-1047 260-284 (484)
387 PRK13709 conjugal transfer nic 62.6 46 0.001 49.4 12.2 62 1000-1063 967-1029(1747)
388 PRK14712 conjugal transfer nic 62.0 39 0.00085 49.6 11.2 62 1000-1063 835-897 (1623)
389 TIGR00580 mfd transcription-re 61.8 36 0.00079 47.7 10.6 96 1325-1422 481-580 (926)
390 cd05512 Bromo_brd1_like Bromod 61.7 1.1 2.4E-05 46.0 -2.7 52 1730-1782 16-68 (98)
391 cd05503 Bromo_BAZ2A_B_like Bro 61.6 0.87 1.9E-05 46.5 -3.4 50 1732-1782 17-67 (97)
392 TIGR02640 gas_vesic_GvpN gas v 61.4 20 0.00044 42.6 7.2 49 1003-1057 5-53 (262)
393 PTZ00454 26S protease regulato 61.3 12 0.00027 47.3 5.7 42 1019-1066 179-220 (398)
394 PRK06067 flagellar accessory p 60.9 39 0.00084 39.2 9.3 48 1021-1071 27-74 (234)
395 PF14619 SnAC: Snf2-ATP coupli 60.8 5.1 0.00011 39.5 1.8 22 1574-1595 16-37 (74)
396 PRK08533 flagellar accessory p 60.6 44 0.00094 39.3 9.6 38 1019-1059 24-61 (230)
397 TIGR03499 FlhF flagellar biosy 60.6 32 0.00069 41.6 8.7 37 1020-1057 195-231 (282)
398 cd05509 Bromo_gcn5_like Bromod 60.3 0.82 1.8E-05 46.7 -3.9 50 1732-1782 18-68 (101)
399 PRK14971 DNA polymerase III su 60.3 86 0.0019 42.2 13.3 39 1122-1160 121-160 (614)
400 PRK14721 flhF flagellar biosyn 60.2 1.4E+02 0.0031 38.5 14.6 79 1122-1201 269-363 (420)
401 COG1419 FlhF Flagellar GTP-bin 59.9 3.1E+02 0.0066 35.5 17.0 133 1019-1178 203-341 (407)
402 cd05495 Bromo_cbp_like Bromodo 59.8 1.3 2.9E-05 46.1 -2.5 57 1731-1788 20-89 (108)
403 TIGR01243 CDC48 AAA family ATP 59.8 13 0.00028 50.5 5.9 43 1019-1067 487-529 (733)
404 TIGR00763 lon ATP-dependent pr 59.2 4E+02 0.0087 37.1 19.6 23 1021-1043 349-371 (775)
405 TIGR00665 DnaB replicative DNA 59.2 2.7E+02 0.0059 35.6 17.0 53 1006-1060 182-234 (434)
406 PRK13849 putative crown gall t 59.2 28 0.00062 40.9 7.8 38 1028-1068 11-50 (231)
407 PRK10867 signal recognition pa 59.0 50 0.0011 42.6 10.5 34 1022-1057 103-136 (433)
408 cd01128 rho_factor Transcripti 58.8 23 0.00051 42.2 7.1 29 1007-1036 5-33 (249)
409 TIGR03880 KaiC_arch_3 KaiC dom 58.3 62 0.0013 37.3 10.2 47 1022-1071 19-65 (224)
410 cd01125 repA Hexameric Replica 58.1 32 0.00069 40.1 8.0 53 1021-1073 3-67 (239)
411 PTZ00293 thymidine kinase; Pro 57.7 30 0.00066 40.6 7.6 35 1023-1060 8-42 (211)
412 PRK10416 signal recognition pa 57.7 66 0.0014 39.9 10.9 32 1023-1057 118-149 (318)
413 PRK05748 replicative DNA helic 57.6 47 0.001 42.6 10.0 62 1006-1069 190-251 (448)
414 COG2256 MGS1 ATPase related to 57.6 13 0.00029 47.0 4.9 17 1021-1037 50-66 (436)
415 PRK11054 helD DNA helicase IV; 57.5 24 0.00053 47.7 7.7 66 1000-1071 196-263 (684)
416 COG0552 FtsY Signal recognitio 57.0 49 0.0011 41.4 9.4 122 1023-1167 143-276 (340)
417 TIGR00959 ffh signal recogniti 56.7 49 0.0011 42.6 9.8 25 1021-1045 101-125 (428)
418 cd05507 Bromo_brd8_like Bromod 56.3 1.9 4E-05 44.7 -2.2 52 1730-1782 18-70 (104)
419 PRK06904 replicative DNA helic 55.9 1E+02 0.0022 40.3 12.5 128 1006-1135 208-347 (472)
420 TIGR01425 SRP54_euk signal rec 55.8 95 0.0021 40.2 12.1 32 1023-1057 104-135 (429)
421 KOG0780 Signal recognition par 55.8 25 0.00055 44.4 6.8 97 1023-1141 105-202 (483)
422 cd05498 Bromo_Brdt_II_like Bro 55.5 1.4 3E-05 45.2 -3.2 54 1728-1782 16-72 (102)
423 PRK08760 replicative DNA helic 55.0 72 0.0016 41.6 11.1 126 1008-1135 218-352 (476)
424 PRK14970 DNA polymerase III su 55.0 82 0.0018 39.1 11.2 40 1005-1044 22-64 (367)
425 PTZ00361 26 proteosome regulat 54.7 25 0.00055 45.2 6.9 40 1019-1064 217-256 (438)
426 cd05528 Bromo_AAA Bromodomain; 54.6 1.2 2.7E-05 46.8 -3.8 49 1733-1782 21-70 (112)
427 smart00297 BROMO bromo domain. 54.5 1.5 3.2E-05 44.6 -3.2 52 1730-1782 22-74 (107)
428 TIGR01547 phage_term_2 phage t 54.5 23 0.00051 44.3 6.5 131 1023-1162 5-142 (396)
429 PF12846 AAA_10: AAA-like doma 54.3 35 0.00075 39.9 7.5 46 1020-1068 2-47 (304)
430 cd05499 Bromo_BDF1_2_II Bromod 54.2 1.5 3.2E-05 45.1 -3.3 52 1730-1782 18-72 (102)
431 PRK13341 recombination factor 54.2 34 0.00073 46.8 8.2 22 1020-1041 53-74 (725)
432 CHL00206 ycf2 Ycf2; Provisiona 54.2 22 0.00048 52.4 6.7 41 1019-1065 1630-1670(2281)
433 PRK10689 transcription-repair 54.1 61 0.0013 46.5 11.0 95 1325-1421 630-728 (1147)
434 TIGR01241 FtsH_fam ATP-depende 54.0 31 0.00067 44.8 7.6 23 1019-1041 88-110 (495)
435 PRK09165 replicative DNA helic 53.7 1.1E+02 0.0024 40.2 12.5 128 1008-1135 206-354 (497)
436 TIGR02760 TraI_TIGR conjugativ 53.6 71 0.0015 48.4 11.9 63 999-1063 1018-1081(1960)
437 COG3973 Superfamily I DNA and 53.4 23 0.00049 46.9 6.1 45 1023-1067 230-277 (747)
438 PRK09376 rho transcription ter 53.3 36 0.00077 43.5 7.7 36 1008-1044 159-194 (416)
439 PHA02244 ATPase-like protein 52.9 75 0.0016 40.4 10.3 29 1014-1042 114-142 (383)
440 KOG1892 Actin filament-binding 52.5 3.6E+02 0.0079 37.9 16.4 14 756-769 1437-1450(1629)
441 PRK14723 flhF flagellar biosyn 52.5 68 0.0015 44.1 10.5 152 1022-1203 188-362 (767)
442 PRK13833 conjugal transfer pro 52.4 33 0.00072 42.5 7.2 44 998-1044 126-169 (323)
443 TIGR03600 phage_DnaB phage rep 52.1 1E+02 0.0022 39.3 11.5 51 1007-1059 182-232 (421)
444 PRK12726 flagellar biosynthesi 51.5 1.4E+02 0.0031 38.3 12.3 47 1020-1069 207-257 (407)
445 PF03237 Terminase_6: Terminas 51.3 54 0.0012 39.2 8.7 105 1024-1136 2-111 (384)
446 PF04364 DNA_pol3_chi: DNA pol 51.1 42 0.00091 36.6 6.9 79 1330-1426 15-97 (137)
447 PRK05564 DNA polymerase III su 51.0 77 0.0017 38.7 9.9 22 1023-1044 30-51 (313)
448 TIGR02974 phageshock_pspF psp 51.0 87 0.0019 38.9 10.5 45 1010-1057 13-57 (329)
449 PRK07276 DNA polymerase III su 50.6 70 0.0015 39.3 9.4 45 1000-1045 2-48 (290)
450 COG2812 DnaX DNA polymerase II 49.9 24 0.00052 46.3 5.6 38 1120-1159 117-156 (515)
451 COG3598 RepA RecA-family ATPas 49.8 63 0.0014 40.3 8.7 40 1018-1057 88-134 (402)
452 PRK10263 DNA translocase FtsK; 49.5 66 0.0014 46.3 9.9 41 1020-1060 1011-1052(1355)
453 PF02572 CobA_CobO_BtuR: ATP:c 49.4 58 0.0013 37.2 7.9 138 1024-1175 8-150 (172)
454 TIGR02760 TraI_TIGR conjugativ 49.4 1.3E+02 0.0028 45.9 13.3 144 997-1165 426-571 (1960)
455 PHA02518 ParA-like protein; Pr 49.2 62 0.0013 36.3 8.2 38 1027-1067 9-48 (211)
456 PRK10919 ATP-dependent DNA hel 49.1 28 0.00061 47.0 6.4 105 1000-1132 2-112 (672)
457 PF02606 LpxK: Tetraacyldisacc 48.8 68 0.0015 39.9 9.1 126 1029-1163 47-191 (326)
458 PF06564 YhjQ: YhjQ protein; 48.7 70 0.0015 38.4 8.8 94 1027-1132 10-127 (243)
459 cd05504 Bromo_Acf1_like Bromod 47.6 2.6 5.6E-05 44.6 -2.8 50 1732-1782 29-79 (115)
460 COG2255 RuvB Holliday junction 47.2 23 0.0005 43.3 4.6 28 1122-1149 103-131 (332)
461 TIGR00767 rho transcription te 47.0 40 0.00087 43.1 6.8 24 1018-1041 167-190 (415)
462 PF00265 TK: Thymidine kinase; 46.5 37 0.00079 38.6 5.8 34 1023-1059 5-38 (176)
463 PF05729 NACHT: NACHT domain 46.4 49 0.0011 35.1 6.6 26 1022-1047 3-28 (166)
464 TIGR00416 sms DNA repair prote 46.1 42 0.00092 43.4 7.0 63 1006-1071 80-143 (454)
465 PRK05595 replicative DNA helic 46.1 76 0.0017 40.8 9.3 61 1006-1068 188-248 (444)
466 TIGR00064 ftsY signal recognit 45.8 1.4E+02 0.0031 36.2 10.9 32 1023-1057 76-107 (272)
467 PRK13900 type IV secretion sys 45.7 38 0.00083 42.1 6.3 34 1009-1042 150-183 (332)
468 KOG0730 AAA+-type ATPase [Post 45.3 1.5E+02 0.0033 40.1 11.6 47 1018-1071 467-514 (693)
469 cd05513 Bromo_brd7_like Bromod 45.2 3.1 6.8E-05 42.9 -2.5 49 1733-1782 19-68 (98)
470 PRK05973 replicative DNA helic 45.0 1.7E+02 0.0038 35.0 11.3 40 1016-1058 61-100 (237)
471 PRK08939 primosomal protein Dn 44.9 73 0.0016 39.2 8.5 47 1008-1057 143-191 (306)
472 PRK07414 cob(I)yrinic acid a,c 44.9 75 0.0016 36.6 7.9 57 1115-1174 108-168 (178)
473 PRK07004 replicative DNA helic 44.9 1.1E+02 0.0023 39.9 10.3 60 1007-1068 201-260 (460)
474 COG4626 Phage terminase-like p 44.8 1.1E+02 0.0024 40.6 10.2 168 999-1183 60-250 (546)
475 KOG3648 Golgi apparatus protei 44.4 9.7 0.00021 49.5 1.0 8 68-75 90-97 (1179)
476 PRK05636 replicative DNA helic 44.3 80 0.0017 41.6 9.1 56 1008-1065 254-309 (505)
477 KOG2028 ATPase related to the 44.2 48 0.001 41.8 6.6 41 1122-1164 222-262 (554)
478 cd05510 Bromo_SPT7_like Bromod 43.8 7.3 0.00016 41.2 -0.2 50 1732-1782 25-75 (112)
479 PRK06321 replicative DNA helic 43.7 1.2E+02 0.0025 39.7 10.4 60 1007-1068 214-273 (472)
480 PRK08506 replicative DNA helic 43.6 2E+02 0.0043 37.7 12.4 60 1006-1068 179-238 (472)
481 PRK06620 hypothetical protein; 43.3 1.4E+02 0.0031 34.8 10.1 100 1054-1160 18-122 (214)
482 PF05496 RuvB_N: Holliday junc 43.1 45 0.00097 39.8 6.0 16 1021-1036 52-67 (233)
483 COG0003 ArsA Predicted ATPase 42.8 41 0.00088 41.8 5.9 55 1026-1083 9-70 (322)
484 PRK08840 replicative DNA helic 42.7 2.2E+02 0.0047 37.3 12.5 60 1008-1069 206-265 (464)
485 TIGR02782 TrbB_P P-type conjug 42.6 44 0.00095 40.9 6.1 42 1000-1044 116-157 (299)
486 cd05502 Bromo_tif1_like Bromod 42.4 2.6 5.7E-05 43.9 -3.6 50 1731-1782 20-73 (109)
487 PHA00012 I assembly protein 42.3 43 0.00093 41.9 5.8 23 1023-1045 5-27 (361)
488 PRK09361 radB DNA repair and r 42.2 1.2E+02 0.0025 35.0 9.2 51 1006-1059 9-60 (225)
489 PRK08006 replicative DNA helic 41.9 1.3E+02 0.0029 39.2 10.5 60 1008-1069 213-272 (471)
490 CHL00195 ycf46 Ycf46; Provisio 41.4 30 0.00064 45.2 4.6 39 1019-1063 259-297 (489)
491 cd05511 Bromo_TFIID Bromodomai 41.0 4.4 9.6E-05 42.6 -2.2 49 1732-1781 17-66 (112)
492 PRK13894 conjugal transfer ATP 40.9 53 0.0012 40.7 6.5 42 999-1043 131-172 (319)
493 COG1435 Tdk Thymidine kinase [ 40.8 70 0.0015 37.4 6.9 107 1023-1158 8-117 (201)
494 PHA02542 41 41 helicase; Provi 40.5 1.1E+02 0.0023 40.2 9.3 49 1006-1057 176-225 (473)
495 PF03796 DnaB_C: DnaB-like hel 40.5 93 0.002 36.8 8.2 36 1022-1059 22-57 (259)
496 PF02456 Adeno_IVa2: Adenoviru 40.2 52 0.0011 40.8 6.0 111 1020-1148 88-222 (369)
497 TIGR03878 thermo_KaiC_2 KaiC d 39.9 2.3E+02 0.0049 34.0 11.3 33 1022-1057 39-71 (259)
498 PF00437 T2SE: Type II/IV secr 39.9 32 0.0007 40.7 4.3 35 1009-1043 117-151 (270)
499 PF00439 Bromodomain: Bromodom 39.7 2.6 5.5E-05 41.0 -4.0 51 1731-1782 12-63 (84)
500 KOG1832 HIV-1 Vpr-binding prot 39.6 25 0.00053 47.8 3.5 57 433-489 130-188 (1516)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.6e-159 Score=1466.21 Aligned_cols=965 Identities=40% Similarity=0.593 Sum_probs=801.6
Q ss_pred cchHHHhhHHHHHHHHH--HHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----H
Q 000169 703 YDVKDLLSEEGLEVLQK--KRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQE----I 776 (1953)
Q Consensus 703 ~d~~~l~~~~~~~~~~~--~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~Q~~lr~~~~~~~~~----~ 776 (1953)
||+..+...+++++..+ .+.++++++++.+. ++++++|.||+++|||+++|++||..++.|+.. .
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~~---------~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~ 198 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSLM---------GELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSE 198 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcch---------HHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccc
Confidence 99999999999987776 48999999988652 689999999999999999999999999998653 3
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000169 777 MAMPDRQYRKFVRLCERQRVELMRQVQTSQKA-----MREK---QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHER 848 (1953)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~r~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~ 848 (1953)
++++...|+|-+++..+. .+++++++++||- .|.+ ++.+++.|.++|.+.|+....+..+++++|..||.+
T Consensus 199 ~~~n~~~~~R~~~q~~~~-~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~ 277 (1157)
T KOG0386|consen 199 TALNPKAFKRGKRQTLSE-ARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHAN 277 (1157)
T ss_pred cccCHHHHhhhhhhhHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567888888776654 4555555554432 2333 378999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcchHHHHHHHHHhHhhhHHHHHHhhhhhHHhhhhHHHHHH
Q 000169 849 ILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEA 928 (1953)
Q Consensus 849 ~~~e~~kr~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~LL~qte~~l~~l~~~v~~~k~~q~~e~~ 928 (1953)
++++++|+.++.+|+||.+||.||+|+|++|+++.| |.| |++||+||++|+.+|+..|+.++.. ...+
T Consensus 278 ~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~K-------d~R---l~~LL~qt~~yl~sL~s~Vk~qk~~--~~~~ 345 (1157)
T KOG0386|consen 278 QERERERRIDRIEKERASALKHNDEEGYRKLQDQKK-------DNR---LSQLLSQTDSYLPSLSSVVKGQKSE--NPDA 345 (1157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhcc-------ccH---HHHhhhhhhHHHHHHHHHHHHhhcc--cccc
Confidence 999999999999999999999999999999999986 455 8899999999999999988765530 0000
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhhhhHHhhhhhcccCCCCCCchhhhhhhhHHhhhhhhccCCcccCCCCCcHHHHHH
Q 000169 929 ANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVG 1008 (1953)
Q Consensus 929 ~~~~~~~~r~~gl~~ee~~~~~~~~~ee~~i~~~f~e~~~p~~~s~~~kyy~lah~i~E~v~eqPs~L~ggkLRPYQleG 1008 (1953)
.+..++......+..+. + ....+..+||.++|.|.|.+.+||+++.||+|++||+.|
T Consensus 346 ------------~~~~d~~~i~~~ak~~~---------~--d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~G 402 (1157)
T KOG0386|consen 346 ------------NSASDISGISGSAKADV---------D--DHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHG 402 (1157)
T ss_pred ------------chhhhhhhhhhhhcchh---------h--hhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhhh
Confidence 00000000000000000 0 022345789999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhH
Q 000169 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQR 1088 (1953)
Q Consensus 1009 L~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deR 1088 (1953)
|+||+++|+|++|||||||||||||||+|++|+||++.++..||+|||||+++|.||..||.+|+|++..++|.|+++.|
T Consensus 403 LqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R 482 (1157)
T KOG0386|consen 403 LQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQR 482 (1157)
T ss_pred hHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhh-hcccceeEEecccCCCCCHHH
Q 000169 1089 SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDLKE 1167 (1953)
Q Consensus 1089 k~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk-~L~a~~RLLLTGTPLQNnL~E 1167 (1953)
+.+..+ +..++|+|++|||+++++++..|.+++|.||||||+|+|||..|+++..|. +|.+.+||||||||+||++.|
T Consensus 483 ~~l~~q-ir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpE 561 (1157)
T KOG0386|consen 483 SGLTKQ-QRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPE 561 (1157)
T ss_pred hhHHHH-HhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHH
Confidence 888765 556999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEE
Q 000169 1168 LWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV 1247 (1953)
Q Consensus 1168 LwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~v 1247 (1953)
||+|||||+|.||+++..|.+||+.||++.| +..++++++.+++|+|||++|+||+|||+|++|+.+||+|++.+
T Consensus 562 LWaLLNFlLP~IFnS~~~FeqWFN~PFantG-----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~v 636 (1157)
T KOG0386|consen 562 LWALLNFLLPNIFNSCKAFEQWFNQPFANTG-----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDV 636 (1157)
T ss_pred HHHHHHHhccchhhhHhHHHHHhhhhhhhcC-----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHh
Confidence 9999999999999999999999999999987 34568889999999999999999999999999999999999999
Q ss_pred EEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC----Cccccchhhh
Q 000169 1248 LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP----YFSDLSKDFL 1323 (1953)
Q Consensus 1248 V~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p----~l~dls~d~L 1323 (1953)
++|.||++|+.+|+++.+.+.+.++. ......++.|+|.+|+|||||||||+|.. +......+.+
T Consensus 637 iKC~mSalQq~lY~~m~~~g~l~~d~-----------~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL 705 (1157)
T KOG0386|consen 637 IKCDMSALQQSLYKQMQNKGQLLKDT-----------AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDL 705 (1157)
T ss_pred hheehhhhhHhhhHHHHhCCCCCcCc-----------hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHH
Confidence 99999999999999999988777664 12234678999999999999999999833 3333344789
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe
Q 000169 1324 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (1953)
Q Consensus 1324 i~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS 1403 (1953)
++.||||++|++||++|+++|||||+||+||.++++|++||..++++|+|+||+|+.++|..+++.||.|+++||+||+|
T Consensus 706 ~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Flls 785 (1157)
T KOG0386|consen 706 VRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLS 785 (1157)
T ss_pred HHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhccc
Q 000169 1404 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGK 1483 (1953)
Q Consensus 1404 TrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gk 1483 (1953)
|+|||+|||||+||||||||++|||+.+.||.+|||||||+++|+|+++++|
T Consensus 786 tragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv---------------------------- 837 (1157)
T KOG0386|consen 786 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV---------------------------- 837 (1157)
T ss_pred ecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh----------------------------
Confidence 9999999999999999999999999999999999999999999999999885
Q ss_pred chhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHHHcCCHHHHH
Q 000169 1484 DRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1563 (1953)
Q Consensus 1484 d~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ee~~~e~~~~v~~~EeLN~~lARs~eE~~ 1563 (1953)
+||||.|+++ +.+|+++|++||+||+||+++++++|+++|+.|++.++... +++++++++||++|||+++|++
T Consensus 838 ----~sveE~il~~-a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~--~~~v~~~~~ln~~larseeE~~ 910 (1157)
T KOG0386|consen 838 ----NSVEEKILAE-AFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEE--EEEVPDDEVLNSMLARSEEEFE 910 (1157)
T ss_pred ----hHHHHHHHHH-HHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccc--cccCCcHHHHHHHHhcchHHHH
Confidence 7999999985 68999999999999999999999999999999999876543 3789999999999999999999
Q ss_pred HHhhhhhhcCcch-------hccccccchHHHhhchHHHHHHHhhhcCCCCcccccccccccCcchhhhhhhcCCCCCCC
Q 000169 1564 LFDQMDEEFGWIE-------EMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKY 1636 (1953)
Q Consensus 1564 lf~~mD~er~~~~-------~l~~~~elP~~l~~~~~e~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~erkr~~~~~k~ 1636 (1953)
+|.+||.+|.|.+ +++.+.++|+|+...+.+.+..-+ ... ......||.+.||+
T Consensus 911 ~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~----~~~---------------~~~~~~rg~r~Rke 971 (1157)
T KOG0386|consen 911 LFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSE----EEE---------------EEKILGRGRRARKE 971 (1157)
T ss_pred HHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhh----hhh---------------hhccccccccccce
Confidence 9999999997743 678899999999877666554221 000 01112466777777
Q ss_pred CCCcccCccccccccccccccCCCCcccc--ccCCCCcccccCCCCCCCCCCCCCCcccCCCccCCCccccCcccccccc
Q 000169 1637 PNYKEVDDEIGEYSEASSDERNGYPVQEE--EGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNN 1714 (1953)
Q Consensus 1637 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1714 (1953)
-.|+.- ..+.-|-.+.++....+...++ .|......|+.+.. . +. ....+--| +..
T Consensus 972 v~y~d~-~te~q~~k~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~-----~~~~~~~~---------~~~ 1029 (1157)
T KOG0386|consen 972 VVYSDR-LTEMQWLKENESVNKEDSEEEERRRGRKKSSLDTRPLS-Q------KK-----RKLRPRSP---------KQA 1029 (1157)
T ss_pred eecccc-cchhhhhhhccccccccchhhhhccCCCccccccccch-h------hc-----ccccCCCh---------HHH
Confidence 777622 1112222121211111100000 01000011111100 0 00 00000011 111
Q ss_pred hhhhcccCcccCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------C
Q 000169 1715 HVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S 1783 (1953)
Q Consensus 1715 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~ 1783 (1953)
..+-.+----.++++|.++..| +++|++-+|+||+++.+|..+.| ++..|+.+.|..-.++..|+.. +
T Consensus 1030 ~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~e 1108 (1157)
T KOG0386|consen 1030 LKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDK-IKKRIENHKYNSLKELEKDFMLLFNNARTYNEE 1108 (1157)
T ss_pred HHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHH-HhhhccccccchHHHHHHHHHhhcchhhhhccC
Confidence 1111111112334899999999 99999999999999999999987 8899999999999999988876 8
Q ss_pred CCccccCCCCccccccchhhhccccccc
Q 000169 1784 GSWTHDRDEGEDEQVLQPKIKRKRSIRV 1811 (1953)
Q Consensus 1784 ~s~~~~~~~~e~~~~~q~~~~~krs~~~ 1811 (1953)
|||+. ||..+||.+++-++..-.
T Consensus 1109 gs~~y-----~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1109 GSRVY-----EDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred Cceec-----hhHHHHHHHHhhhHHHHh
Confidence 99998 999999999988776543
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=6.9e-110 Score=1005.78 Aligned_cols=511 Identities=43% Similarity=0.717 Sum_probs=454.5
Q ss_pred hhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 988 ~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
....+|..+.+|.|||||++||+||+++|.|+.|||||||||||||+|+|+++.|+...++..||+|||||.|++.||.+
T Consensus 155 ~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~ 234 (971)
T KOG0385|consen 155 RFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN 234 (971)
T ss_pred cccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH
Confidence 34458999998999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~ 1147 (1953)
||.+|+|++.+++|+|.+++|..+.......+.|+||||||++++++.+.|.++.|.|+||||||||||..|++++.|+.
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~ 314 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILRE 314 (971)
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHH
Confidence 99999999999999999999998887777788999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
|.+.+||||||||+|||+.|||+|||||+|++|++.+.|..||..... +.....+.+||.+|+||
T Consensus 315 f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~---------------~~~~e~v~~Lh~vL~pF 379 (971)
T KOG0385|consen 315 FKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC---------------EGDQELVSRLHKVLRPF 379 (971)
T ss_pred hcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc---------------ccCHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999999975311 01112578999999999
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
+|||+|.+|++.||||.+.+++|.||..|+..|+.+.......+..... ..-..|+|++|+|||||||
T Consensus 380 lLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~------------~~k~kL~NI~mQLRKccnH 447 (971)
T KOG0385|consen 380 LLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGK------------GEKTKLQNIMMQLRKCCNH 447 (971)
T ss_pred HHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccccc------------chhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999987754333222110 0245799999999999999
Q ss_pred CCCCCCCc---cccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1308 PLLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1308 P~L~~p~l---~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
||||.... .....+.++..|||+.+|+++|++|++.||||||||||+.++|||++||-+++|.||||||+|+.++|.
T Consensus 448 PYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~ 527 (971)
T KOG0385|consen 448 PYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEERE 527 (971)
T ss_pred ccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHH
Confidence 99987532 344567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhh
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1464 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~ 1464 (1953)
..|+.||.+++..|||||||+|||+||||++|||||+||+||||+.++||++|||||||+|+|+||+|++
T Consensus 528 ~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit---------- 597 (971)
T KOG0385|consen 528 DAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT---------- 597 (971)
T ss_pred HHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhccccc-ccCCHHHHHHHHHHHHhhhhhh-hccc
Q 000169 1465 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD-QRTTHEERRMTLETLLHDEERY-QETV 1542 (1953)
Q Consensus 1465 EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD-~kst~eERr~~Le~LLe~ee~~-~e~~ 1542 (1953)
.++||++|++++ ..|+.++..||+.|... .++.. .-...+..|+..+... .+..
T Consensus 598 ----------------------entVEe~IveRA-~~KL~Ld~~VIq~g~l~~~~~~~-~~k~~~l~~~r~g~~~~f~~~ 653 (971)
T KOG0385|consen 598 ----------------------ENTVEEKIVERA-AAKLRLDKLVIQQGRLEEQKSNG-LGKDELLNLLRFGADPVFESK 653 (971)
T ss_pred ----------------------cchHHHHHHHHH-HHHhchhhhhhccCchhhhhccc-cchHHHHHHHHcCchhhhhhc
Confidence 379999999985 77999999999999543 23332 2233455666544322 2333
Q ss_pred cCCCCHHHHHHHHcCCHH
Q 000169 1543 HDVPSLQEVNRMIARSED 1560 (1953)
Q Consensus 1543 ~~v~~~EeLN~~lARs~e 1560 (1953)
....++ +|..+|.|+++
T Consensus 654 es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 654 ESTISD-DIDRILERGEE 670 (971)
T ss_pred ccccch-hHHHHHHhhhh
Confidence 333344 99999999874
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.9e-100 Score=956.97 Aligned_cols=508 Identities=40% Similarity=0.667 Sum_probs=447.5
Q ss_pred hhhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 987 E~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
..+..+|..+.|.+||+||++||+||+..|.++.|||||||||||||||+|++|.+|+......||||||||.+++.+|.
T Consensus 357 ~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~ 436 (1373)
T KOG0384|consen 357 RKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWE 436 (1373)
T ss_pred HHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998877999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecchhhHhHHHHHHHhh------ccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH
Q 000169 1067 SELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA------LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (1953)
Q Consensus 1067 ~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~------~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (1953)
.||..|+ .+++++|+|....|.-+...++.. .+|+++||||+++++|...|..++|.+++||||||+||..|+
T Consensus 437 ~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 437 REFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHH
Confidence 9999999 999999999999887776555432 369999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1141 lsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
++..|..|...+||++||||+||++.|||+||+||+|+.|.++..|...|.. ....-++.|
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------------~~e~~~~~L 576 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------------ETEEQVRKL 576 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------------hhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987631 112247889
Q ss_pred HHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmq 1300 (1953)
|.+|+||||||+|+||++.||+|.|.++.|.||+.|+.+|++|+..+.-.+..+ .. ....+|+|++|.
T Consensus 577 ~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG---------~~---g~~~~lLNimmE 644 (1373)
T KOG0384|consen 577 QQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKG---------AK---GSTPSLLNIMME 644 (1373)
T ss_pred HHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhcc---------CC---CCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999987643222111 00 112579999999
Q ss_pred HHHhcCCCCCCCCCcccc-----------chhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCC
Q 000169 1301 LRKTCNHPLLNYPYFSDL-----------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (1953)
Q Consensus 1301 LRKiCNHP~L~~p~l~dl-----------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGi 1369 (1953)
|+||||||||+.+..+.+ ....++.+|||+.+|++||.+|++.||||||||||+.|+|||++||..++|
T Consensus 645 LkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~y 724 (1373)
T KOG0384|consen 645 LKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGY 724 (1373)
T ss_pred HHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCC
Confidence 999999999987653322 234578999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
+|-||||+++.+-|+.+|+.||+++++.|||||||+|||+||||.+||||||||+||||+.++||+.|||||||++.|.|
T Consensus 725 pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 725 PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCH--HHHHHH
Q 000169 1450 IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH--EERRMT 1527 (1953)
Q Consensus 1450 yrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~--eERr~~ 1527 (1953)
|||+| .+|||+-|+++ ++.|+-++..||+.+.++...+. .-....
T Consensus 805 YRLVT--------------------------------k~TvEeEilER-Ak~KmvLD~aVIQ~m~t~~~~s~~~~f~K~E 851 (1373)
T KOG0384|consen 805 YRLVT--------------------------------KNTVEEEILER-AKLKMVLDHAVIQRMDTKGKTSKSNPFSKEE 851 (1373)
T ss_pred EEEec--------------------------------CCchHHHHHHH-HHHHhhhHHHHHHhhccccccCCCCCCCHHH
Confidence 99987 48999999998 58899999999999877433222 222556
Q ss_pred HHHHHhhhh--hhhc--cccCCCCHHHHHHHHcCCH
Q 000169 1528 LETLLHDEE--RYQE--TVHDVPSLQEVNRMIARSE 1559 (1953)
Q Consensus 1528 Le~LLe~ee--~~~e--~~~~v~~~EeLN~~lARs~ 1559 (1953)
|.+||.-++ -+.+ ........++|+++|.|.+
T Consensus 852 LsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae 887 (1373)
T KOG0384|consen 852 LSAILKFGAYELFKEEENEESKFCEMDIDEILERAE 887 (1373)
T ss_pred HHHHHHhchHHhhhccccccccccccCHHHHHhhcc
Confidence 788877432 2222 2233445567888887754
No 4
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1e-93 Score=852.29 Aligned_cols=465 Identities=40% Similarity=0.727 Sum_probs=415.9
Q ss_pred hhhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 987 E~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
+....||.+|. ++|++||++||+||+.+|..+.|||||||||||||+|+|+++++|.+.+..+||||||+|.+++.||.
T Consensus 555 t~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWa 633 (1185)
T KOG0388|consen 555 TRTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWA 633 (1185)
T ss_pred eeeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHH
Confidence 34568999996 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecchhhHhHHHHHHH------hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH
Q 000169 1067 SELHKWLPSVSCIYYVGAKDQRSRLFSQEV------AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (1953)
Q Consensus 1067 ~Ef~KwaPslkVvvy~Gs~deRk~l~~qei------~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (1953)
.||.+|+|.++|+.|.|+..+|+.+..... ....|+||||||+.+..|...|.+++|.|+|+|||+.||...|.
T Consensus 634 qEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~ 713 (1185)
T KOG0388|consen 634 QEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSS 713 (1185)
T ss_pred HHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhh
Confidence 999999999999999999999976654222 34679999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1141 lsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
+|+.|..|+|+.|||||||||||+..|||+||+|++|.+|++.+.|.+||.+.++........ ++ ...+.||
T Consensus 714 RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~t----ln----eqqL~RL 785 (1185)
T KOG0388|consen 714 RWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTT----LN----EQQLQRL 785 (1185)
T ss_pred HHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCC----cC----HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887654222111 11 2247899
Q ss_pred HHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmq 1300 (1953)
|.+|.||||||.|+||..+|..|+++.|+|.||..|..+|+.|..... ...+.+++|+
T Consensus 786 H~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------------------~~E~~~~vmQ 843 (1185)
T KOG0388|consen 786 HAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------------------SMEMENLVMQ 843 (1185)
T ss_pred HHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------------------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999998865321 1233458999
Q ss_pred HHHhcCCCCCCCCCc-----------------------------------------------------------------
Q 000169 1301 LRKTCNHPLLNYPYF----------------------------------------------------------------- 1315 (1953)
Q Consensus 1301 LRKiCNHP~L~~p~l----------------------------------------------------------------- 1315 (1953)
|||+||||.||....
T Consensus 844 lrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~ 923 (1185)
T KOG0388|consen 844 LRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNA 923 (1185)
T ss_pred HHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcch
Confidence 999999997631000
Q ss_pred -----------ccc------------------------------------------------------------------
Q 000169 1316 -----------SDL------------------------------------------------------------------ 1318 (1953)
Q Consensus 1316 -----------~dl------------------------------------------------------------------ 1318 (1953)
.+.
T Consensus 924 w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId 1003 (1185)
T KOG0388|consen 924 WYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEID 1003 (1185)
T ss_pred hcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCC
Confidence 000
Q ss_pred ---------------chhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000169 1319 ---------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (1953)
Q Consensus 1319 ---------------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeR 1383 (1953)
..+..+..|||+..|+.+|++|++.|||||+|+|||.|+|+|++||..++|.|+||||+.+..+|
T Consensus 1004 ~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dR 1083 (1185)
T KOG0388|consen 1004 LENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDR 1083 (1185)
T ss_pred ccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHH
Confidence 00112556899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhh
Q 000169 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 1463 (1953)
Q Consensus 1384 qeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q 1463 (1953)
..++.+|.. +++|||||||+|||+||||++||||||||++|||+.+.||++||||+||++.|+||+|++
T Consensus 1084 rd~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~--------- 1152 (1185)
T KOG0388|consen 1084 RDVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT--------- 1152 (1185)
T ss_pred HHHHhhccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc---------
Confidence 999999996 889999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccc
Q 000169 1464 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1517 (1953)
Q Consensus 1464 ~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~ 1517 (1953)
.++|||+|+++ +..|..+...|+..|.|-.
T Consensus 1153 -----------------------rgTvEEk~l~r-A~qK~~vQq~Vm~G~~~qg 1182 (1185)
T KOG0388|consen 1153 -----------------------RGTVEEKVLER-ANQKDEVQQMVMHGNIFQG 1182 (1185)
T ss_pred -----------------------cccHHHHHHHH-hhhHHHHHHHHHcCCcccC
Confidence 48999999997 4789999999999888753
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-93 Score=875.87 Aligned_cols=485 Identities=42% Similarity=0.736 Sum_probs=427.6
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
..|.+|. |.||+||..||+||+.+|++++|||||||||||||||+|+|+++|...+++|||+|||||++++.||..||+
T Consensus 607 pvPsLLr-GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 607 PVPSLLR-GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred CchHHHH-HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 4566664 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccc
Q 000169 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (1953)
Q Consensus 1071 KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a 1150 (1953)
+|||+++++.|+|+..+|+.....+.....|+|+||||..+..+...|...+|.|+||||||+|||..+.+|++|..|++
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfns 765 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNS 765 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccch
Confidence 99999999999999999988887777889999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
.+||||||||++|++.|||+||+||+|.+|.+.+.|..||..|+...-... .+.....+.|||++|+||+||
T Consensus 766 qrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs--------qeyn~klV~RLHkVlrPfiLR 837 (1958)
T KOG0391|consen 766 QRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS--------QEYNHKLVIRLHKVLRPFILR 837 (1958)
T ss_pred hheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc--------hhhchHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999986542211 122234678999999999999
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
|+|.||+++||.|.|++|+|.||..|+.+|+.+..... .+..+. ...+-++.|++|+||||||||-|
T Consensus 838 RlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~-------TKetLk------SGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 838 RLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG-------TKETLK------SGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred HHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccc-------hhhHhh------cCchhHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999998754321 111111 12356789999999999999966
Q ss_pred CCCC----------------------------------------------------------------------------
Q 000169 1311 NYPY---------------------------------------------------------------------------- 1314 (1953)
Q Consensus 1311 ~~p~---------------------------------------------------------------------------- 1314 (1953)
|.+.
T Consensus 905 fEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~p 984 (1958)
T KOG0391|consen 905 FEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIP 984 (1958)
T ss_pred CCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCc
Confidence 3100
Q ss_pred ------c-----------------------------------------------c-------------------------
Q 000169 1315 ------F-----------------------------------------------S------------------------- 1316 (1953)
Q Consensus 1315 ------l-----------------------------------------------~------------------------- 1316 (1953)
| +
T Consensus 985 t~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~s 1064 (1958)
T KOG0391|consen 985 TFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVS 1064 (1958)
T ss_pred cccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecc
Confidence 0 0
Q ss_pred ------------------------------c-------------------------------c-----------------
Q 000169 1317 ------------------------------D-------------------------------L----------------- 1318 (1953)
Q Consensus 1317 ------------------------------d-------------------------------l----------------- 1318 (1953)
+ +
T Consensus 1065 v~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~ 1144 (1958)
T KOG0391|consen 1065 VPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYL 1144 (1958)
T ss_pred ccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhh
Confidence 0 0
Q ss_pred -c-----hhh----------------------------------------------------------------------
Q 000169 1319 -S-----KDF---------------------------------------------------------------------- 1322 (1953)
Q Consensus 1319 -s-----~d~---------------------------------------------------------------------- 1322 (1953)
. .+.
T Consensus 1145 ~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~ 1224 (1958)
T KOG0391|consen 1145 VNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRIL 1224 (1958)
T ss_pred ccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHH
Confidence 0 000
Q ss_pred ------------------------------hhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEE
Q 000169 1323 ------------------------------LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (1953)
Q Consensus 1323 ------------------------------Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikyl 1372 (1953)
+--.|||+..|.-+|..|+..|||||||+||+.|+|+|+.||.++|+.|+
T Consensus 1225 ~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~ 1304 (1958)
T KOG0391|consen 1225 RQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYV 1304 (1958)
T ss_pred HHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEE
Confidence 01136899999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1373 RLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
||||+|+.++|+.++++||. |..+|||||||+.||+||||+.||||||||.||||.++.||++|+|||||+++|+||||
T Consensus 1305 RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1305 RLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred EecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEe
Confidence 99999999999999999997 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHH
Q 000169 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 1532 (1953)
Q Consensus 1453 vTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LL 1532 (1953)
++ ..+||+.|+++ +..|.-+++.+|+.|.| +++--+...+.+|+
T Consensus 1384 IS--------------------------------e~TIEeniLkk-anqKr~L~evaiqggdf---Tt~ff~q~ti~dLF 1427 (1958)
T KOG0391|consen 1384 IS--------------------------------ERTIEENILKK-ANQKRMLDEVAIQGGDF---TTAFFKQRTIRDLF 1427 (1958)
T ss_pred ec--------------------------------cchHHHHHHhh-hhHHHHHHHHhhccCCc---cHHHHhhhhHHHHh
Confidence 76 26899999987 46788999999999998 44444555556666
Q ss_pred hh
Q 000169 1533 HD 1534 (1953)
Q Consensus 1533 e~ 1534 (1953)
.-
T Consensus 1428 d~ 1429 (1958)
T KOG0391|consen 1428 DV 1429 (1958)
T ss_pred cC
Confidence 53
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.3e-88 Score=878.67 Aligned_cols=510 Identities=41% Similarity=0.715 Sum_probs=446.5
Q ss_pred hhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 988 ~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
.+..+|..+. ++|||||+.||+||+.++.++.|||||||||||||+|+|+++.++....+..+|+|||||.+++.||..
T Consensus 158 ~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~ 236 (1033)
T PLN03142 158 RLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMN 236 (1033)
T ss_pred eeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHH
Confidence 3456898887 699999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~ 1147 (1953)
||.+|+|.+.+++|+|....|..+.........|+||||||+++.++...|.++.|++|||||||++||..+++++++..
T Consensus 237 Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~ 316 (1033)
T PLN03142 237 EIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRL 316 (1033)
T ss_pred HHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 99999999999999999988776655445567899999999999999999999999999999999999999999999999
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.+.+||+|||||++|++.|||+||+||.|++|++...|..||...... .....+.+||.+|+||
T Consensus 317 L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~---------------~~~e~i~~L~~~L~pf 381 (1033)
T PLN03142 317 FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN---------------DQQEVVQQLHKVLRPF 381 (1033)
T ss_pred hhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc---------------chHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999752110 1123577899999999
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
++||+|.+|...||++.+.+++|.||+.|+.+|+.+.......+. .. .....+++.+++||+||+|
T Consensus 382 ~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~---------~g-----~~~~~LlnilmqLRk~cnH 447 (1033)
T PLN03142 382 LLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN---------AG-----GERKRLLNIAMQLRKCCNH 447 (1033)
T ss_pred HhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh---------cc-----ccHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988654211110 00 1234678899999999999
Q ss_pred CCCCCCCc---cccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1308 PLLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1308 P~L~~p~l---~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
|+++.... .......++..|+|+.+|+++|..+...|+||||||+|+.++++|+++|..+|+.|++|||+++.++|.
T Consensus 448 P~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq 527 (1033)
T PLN03142 448 PYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 527 (1033)
T ss_pred HHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 99975432 223456678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhh
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1464 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~ 1464 (1953)
.+|+.||.+++..+||||||+|||+||||+.||+||+||+||||..++||+||+|||||+++|.||+|++
T Consensus 528 ~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt---------- 597 (1033)
T PLN03142 528 ASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT---------- 597 (1033)
T ss_pred HHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEe----------
Confidence 9999999888888999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhhhhh-hhcccc
Q 000169 1465 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEER-YQETVH 1543 (1953)
Q Consensus 1465 EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ee~-~~e~~~ 1543 (1953)
.+|||++|+++ +..|+.++..||+.|.+..... .....|.+|+.-... .-....
T Consensus 598 ----------------------~gTIEEkIler-a~~Kl~Ld~~Vi~~g~~~~~~~--~~~~eL~~ll~~ga~~~f~~~~ 652 (1033)
T PLN03142 598 ----------------------EYTIEEKVIER-AYKKLALDALVIQQGRLAEQKT--VNKDELLQMVRYGAEMVFSSKD 652 (1033)
T ss_pred ----------------------CCcHHHHHHHH-HHHHHHHHHHHHhcCccccccc--CCHHHHHHHHHhChHHhhhccC
Confidence 38999999996 6889999999999998764321 113346667654322 112223
Q ss_pred CCCCHHHHHHHHcCCHHHH
Q 000169 1544 DVPSLQEVNRMIARSEDEV 1562 (1953)
Q Consensus 1544 ~v~~~EeLN~~lARs~eE~ 1562 (1953)
...++++|+.+|+|+++..
T Consensus 653 ~~~~~~did~il~~~~~~~ 671 (1033)
T PLN03142 653 STITDEDIDRIIAKGEEAT 671 (1033)
T ss_pred CCCCHHHHHHHHHhcHHHH
Confidence 4578999999999998755
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-88 Score=825.52 Aligned_cols=488 Identities=41% Similarity=0.660 Sum_probs=413.5
Q ss_pred hccCCcccC-CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 989 VMRQPSMLR-AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 989 v~eqPs~L~-ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
+..||..|. +.+|+|||+.||+||.-+|..+++||||||||||||+|+|++++||.+ .+..||+|||||.|++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHH
Confidence 566888885 459999999999999999999999999999999999999999999997 677999999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHH-hhccccEEEEeHHHHH---hhhhcccccCccEEEcccccccCCchhHHHH
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEV-AALKFNVLVTTYEFIM---YDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qei-~~~~fdVVITTYEsL~---kd~s~L~kikWd~VIIDEAHrLKN~~SKlsr 1143 (1953)
||.+|||.++|..|+|+.++|+.+...-. ...+|+|+||||..+. .|+.+|...+|+|+|.||||.+||..|.+|+
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 99999999999999999999988764322 2348999999999886 4678899999999999999999999999999
Q ss_pred HhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCCh-HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR-KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1144 aLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~-k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
.|..+++.+||+|||||+||+|.|||+||.|++|.+|.+. ..+..-|..--... .+.+...+..+ .|.|-..
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d---~d~e~~~l~qe----rIsrAK~ 618 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSD---GDIENALLSQE----RISRAKT 618 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCcc---chhhHHHHHHH----HHHHHHH
Confidence 9999999999999999999999999999999999999765 56666665321111 11111222222 4788999
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
++.||+|||+|.+|++.||+|..++.+|.|+..|+.+|..+........ .....+ ... .+ -+.+|+||
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~------~~~~~n----s~~-~~-~~vlmqlR 686 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKL------NEVSKN----SEL-KS-GNVLMQLR 686 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhc------cccccc----ccc-cc-chHHHHHH
Confidence 9999999999999999999999999999999999999998765421110 011111 001 11 46899999
Q ss_pred HhcCCCCCCCCCcccc-------------------------------------------------chhhhhhcccHHHHH
Q 000169 1303 KTCNHPLLNYPYFSDL-------------------------------------------------SKDFLVKSCGKLWIL 1333 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dl-------------------------------------------------s~d~Li~~SGKLelL 1333 (1953)
|++|||.|+...+.+. -.+..|-.|||+..|
T Consensus 687 K~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L 766 (941)
T KOG0389|consen 687 KAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKL 766 (941)
T ss_pred HHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHH
Confidence 9999999964332210 123357789999999
Q ss_pred HHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCC
Q 000169 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1413 (1953)
Q Consensus 1334 drIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNL 1413 (1953)
..||++++..|+|||||||||.|+|||+.+|.-+++.|+||||+|...+|+.+|++||. +.++|||||||+|||.||||
T Consensus 767 ~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINL 845 (941)
T KOG0389|consen 767 KELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINL 845 (941)
T ss_pred HHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999996 77899999999999999999
Q ss_pred ccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHH
Q 000169 1414 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGL 1493 (1953)
Q Consensus 1414 QaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~ 1493 (1953)
+.||+||+||.++||..+.||.+||||+||+|+|+||+|++ .++|||.
T Consensus 846 t~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLIt--------------------------------k~TIEE~ 893 (941)
T KOG0389|consen 846 TCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLIT--------------------------------KSTIEEG 893 (941)
T ss_pred cccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEe--------------------------------cCcHHHH
Confidence 99999999999999999999999999999999999999987 4899999
Q ss_pred HHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhh
Q 000169 1494 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD 1534 (1953)
Q Consensus 1494 IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ 1534 (1953)
|+. |++.|+.++..+...++-.. .+.+..+..||+.
T Consensus 894 I~~-lA~~KL~Le~~lt~~~k~~~----~e~~~~v~~lL~~ 929 (941)
T KOG0389|consen 894 ILR-LAKTKLALEADLTEDGKGVE----DEGEKTVGKLLET 929 (941)
T ss_pred HHH-HHHHhhhhhhhhccCccchh----hhhhhHHHHHHHH
Confidence 998 78999999888887665322 2223345555554
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.9e-85 Score=794.83 Aligned_cols=469 Identities=33% Similarity=0.585 Sum_probs=404.0
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
..|..+. ..|+|||.+||+||+++|.++.||||+||||||||||+|+||+.|.......+|+|||||.+++.||..||.
T Consensus 197 ~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 4566554 389999999999999999999999999999999999999999999876566799999999999999999999
Q ss_pred HHCCCCeEEEEecchhh-Hh---------HHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH
Q 000169 1071 KWLPSVSCIYYVGAKDQ-RS---------RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (1953)
Q Consensus 1071 KwaPslkVvvy~Gs~de-Rk---------~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (1953)
+|+|.++|.+|+++... |. ...-........+|+||||+.++.....+..+.|+|||+||+|+|+|++++
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~ 355 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSK 355 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccH
Confidence 99999999999997662 10 000011224456899999999999999999999999999999999999999
Q ss_pred HHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1141 lsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
++.+++.+++.+|++|||||+||++.|||+||+|+.|+.+++...|.+.|..|+..++...... ........+...|
T Consensus 356 islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~---~qv~~aykca~~L 432 (923)
T KOG0387|consen 356 ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASP---RQVQTAYKCAVAL 432 (923)
T ss_pred HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCH---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887655443 2233344556789
Q ss_pred HHHhhHHHHHHHHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVek-dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilm 1299 (1953)
+.++.||+|||+|.||.. .||.|.++|++|.||+.|+.+|..+.+...+ ..+... -..++..+.
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v--------~~i~ng-------~~~~l~Gi~ 497 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEV--------NKILNG-------KRNCLSGID 497 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHH--------HHHHcC-------CccceechH
Confidence 999999999999999999 9999999999999999999999988654211 111110 011233467
Q ss_pred HHHHhcCCCCCCCCC--ccccchh--hhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH-HcCCeEEee
Q 000169 1300 ELRKTCNHPLLNYPY--FSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ-WRQLVYRRI 1374 (1953)
Q Consensus 1300 qLRKiCNHP~L~~p~--l~dls~d--~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~-~rGikylRL 1374 (1953)
-||++||||.++... ......+ -.+..|||+++|..+|..++..|+|||+|+|...|+|||+.+|. ..||.|+|+
T Consensus 498 iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRm 577 (923)
T KOG0387|consen 498 ILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRM 577 (923)
T ss_pred HHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEe
Confidence 799999999997663 1111122 46789999999999999999999999999999999999999999 799999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1375 DGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
||.|+...|..+|++||. +..++||||+|+|||+||||+.||.||||||+|||..+.||..|||||||+|.|.||||++
T Consensus 578 DGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 578 DGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred cCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 999999999999999997 6678999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000169 1455 VVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (1953)
Q Consensus 1455 VEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqA 1512 (1953)
.++|||.|+-+ |=+|..+.+.++.-
T Consensus 657 --------------------------------~gTIEEkiY~r-QI~Kq~Ltn~il~~ 681 (923)
T KOG0387|consen 657 --------------------------------AGTIEEKIYHR-QIFKQFLTNRILKN 681 (923)
T ss_pred --------------------------------CCcHHHHHHHH-HHHHHHHHHHHhcC
Confidence 36788888765 56777777777743
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=9.3e-83 Score=793.05 Aligned_cols=495 Identities=33% Similarity=0.564 Sum_probs=426.2
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHH
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~SLL~Q 1064 (1953)
..|.-+. .+||.||++||+|+..++..+++|||||+||||||+|+|++++.-...+. ..-|.|||||.+|+.+
T Consensus 967 ~Ip~pI~-a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGH 1045 (1549)
T KOG0392|consen 967 KIPVPIS-AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGH 1045 (1549)
T ss_pred ccccchh-HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhH
Confidence 3444443 48999999999999999999999999999999999999999986554331 3358999999999999
Q ss_pred HHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHH
Q 000169 1065 WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1065 W~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
|+.|+.+|+|-++++.|.|.+..|..++.+ ..+.+|+||+|+.+++|...|.++.|.|+|+||+|-|||..++++++
T Consensus 1046 W~~E~~kf~pfL~v~~yvg~p~~r~~lR~q---~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~ka 1122 (1549)
T KOG0392|consen 1046 WKSEVKKFFPFLKVLQYVGPPAERRELRDQ---YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKA 1122 (1549)
T ss_pred HHHHHHHhcchhhhhhhcCChHHHHHHHhh---ccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHH
Confidence 999999999999999999999999877543 45679999999999999999999999999999999999999999999
Q ss_pred hhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1145 Lk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
++.+++.+||+|||||+||++.|||+||+||+|+++|+.+.|.+.|.+|+........ ...+.+.....+..||+.+
T Consensus 1123 vkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~---Sske~EaG~lAleaLHKqV 1199 (1549)
T KOG0392|consen 1123 VKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKS---SSKEQEAGVLALEALHKQV 1199 (1549)
T ss_pred HHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCccc---chhHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987644332 2356678888999999999
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
-||+|||+|.||+++||||+....+|+|++.|+++|+.+.......++...+........ ....+...+..|||.
T Consensus 1200 LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt-----~~~HvFqaLqYlrKL 1274 (1549)
T KOG0392|consen 1200 LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGT-----DKTHVFQALQYLRKL 1274 (1549)
T ss_pred HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCc-----chHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998776333322221111111110 145778889999999
Q ss_pred cCCCCCCCCCc-cccc---------hhhh--hhcccHHHHHHHHHHHHH--------------hcCCeeEEeechhHHHH
Q 000169 1305 CNHPLLNYPYF-SDLS---------KDFL--VKSCGKLWILDRILIKLQ--------------RTGHRVLLFSTMTKLLD 1358 (1953)
Q Consensus 1305 CNHP~L~~p~l-~dls---------~d~L--i~~SGKLelLdrIL~kLk--------------atGhKVLIFSQft~~LD 1358 (1953)
||||.+..... +++. ...+ +..++|+.+|..||.++- ..+||||||||+..++|
T Consensus 1275 cnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlD 1354 (1549)
T KOG0392|consen 1275 CNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLD 1354 (1549)
T ss_pred cCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHH
Confidence 99999875421 1110 1112 678999999999999882 25799999999999999
Q ss_pred HHHHHHHHc---CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhh
Q 000169 1359 ILEEYLQWR---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1435 (1953)
Q Consensus 1359 ILed~L~~r---GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAi 1435 (1953)
++++-|-.. .+.|.||||++++.+|.+++++||+ |..+.|+|++|.+||+||||++||||||++.||||..++||+
T Consensus 1355 lVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAM 1433 (1549)
T KOG0392|consen 1355 LVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAM 1433 (1549)
T ss_pred HHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHH
Confidence 999888655 5669999999999999999999997 777899999999999999999999999999999999999999
Q ss_pred hcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccc
Q 000169 1436 ARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 1515 (1953)
Q Consensus 1436 GRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkF 1515 (1953)
|||||||||+.|.||||++ .|++||+|+. ++++|.++++.||++..-
T Consensus 1434 DRAHRIGQKrvVNVyRlIt--------------------------------rGTLEEKVMg-LQkFKmnvAntvInqqNa 1480 (1549)
T KOG0392|consen 1434 DRAHRIGQKRVVNVYRLIT--------------------------------RGTLEEKVMG-LQKFKMNVANTVINQQNA 1480 (1549)
T ss_pred HHHHhhcCceeeeeeeehh--------------------------------cccHHHHHhh-HHHHhhHHHHHHHhcccc
Confidence 9999999999999999976 4899999997 899999999999999887
Q ss_pred cccCCHHHHHHHHHHH
Q 000169 1516 DQRTTHEERRMTLETL 1531 (1953)
Q Consensus 1516 D~kst~eERr~~Le~L 1531 (1953)
+..+...+....|...
T Consensus 1481 sl~tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1481 SLETMDTDQLLDLFTV 1496 (1549)
T ss_pred cccccCHHHHHHHhcc
Confidence 7777777766655553
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-66 Score=651.02 Aligned_cols=435 Identities=30% Similarity=0.456 Sum_probs=364.2
Q ss_pred CCCCcHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC----CCeEEEechHHHHHHHH
Q 000169 998 AGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY----GPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~----GP~LIVVP~SLL~QW~~ 1067 (1953)
...|||||.+|+.||+.... +..|||+||+||+|||+++|++|+.++...+.+ ...|||||.+|+.||.+
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkk 315 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKK 315 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHH
Confidence 45899999999999997642 456789999999999999999999999866653 45799999999999999
Q ss_pred HHHHHCC--CCeEEEEecchhhH----hHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHH
Q 000169 1068 ELHKWLP--SVSCIYYVGAKDQR----SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 1141 (1953)
Q Consensus 1068 Ef~KwaP--slkVvvy~Gs~deR----k~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKl 1141 (1953)
||.+|.. .+....+.|..+.. ..++......-..-|+|.+|+.+.++...+....+++||+||||++||..+.+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~ 395 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLT 395 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHH
Confidence 9999986 57777777776641 11111112233456999999999999899999999999999999999999999
Q ss_pred HHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1142 sraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
+++|..+.+++|++|||||+||++.|+|++|+|++|+++++...|...|..|+.........+.+... + .-+..|.
T Consensus 396 ~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-~---~rl~eL~ 471 (776)
T KOG0390|consen 396 LKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-E---ERLQELR 471 (776)
T ss_pred HHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-H---HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876554433322111 2 2278999
Q ss_pred HHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1222 klLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
.++..|++||+-..+.++||.+.+++|.|.+++.|..+|+.+.... .. .. ....-+..+..|
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-------~~----------~~~~~l~~~~~L 533 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-------RT----------LKGYALELITKL 533 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-------hh----------hhcchhhHHHHH
Confidence 9999999999999999999999999999999999999999887642 10 00 001134567889
Q ss_pred HHhcCCCCCCC-CCcc-----ccc-----------h-hhhhhcccHHHHHHHHHHHHHh-cCCeeEEeechhHHHHHHHH
Q 000169 1302 RKTCNHPLLNY-PYFS-----DLS-----------K-DFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEE 1362 (1953)
Q Consensus 1302 RKiCNHP~L~~-p~l~-----dls-----------~-d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQft~~LDILed 1362 (1953)
+++||||.|.. .... ... . ..-...++|+..|+.+|...++ ...++++.++++.++++++.
T Consensus 534 ~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~ 613 (776)
T KOG0390|consen 534 KKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQ 613 (776)
T ss_pred HHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHH
Confidence 99999999863 1000 000 0 0112347999999999966543 34577777899999999999
Q ss_pred HHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccC
Q 000169 1363 YLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1363 ~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIG 1442 (1953)
.++++|+.+++|||+|+..+|+.+|+.||++.+..||||+|++|||+||||.+|++||+||++|||+.+.||++||||.|
T Consensus 614 ~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG 693 (776)
T KOG0390|consen 614 LCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG 693 (776)
T ss_pred HHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeh
Q 000169 1443 QKREVKVIYMEA 1454 (1953)
Q Consensus 1443 QKKeV~VyrLvT 1454 (1953)
|+|.|+||+|++
T Consensus 694 QKk~v~iYrLla 705 (776)
T KOG0390|consen 694 QKKPVYIYRLLA 705 (776)
T ss_pred CcceEEEEEeec
Confidence 999999999987
No 11
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.9e-64 Score=647.12 Aligned_cols=469 Identities=40% Similarity=0.640 Sum_probs=400.6
Q ss_pred CCCCCcHHHHHHHHHHH-HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHHHHHHHHHHHHHCC
Q 000169 997 RAGTLRDYQIVGLQWML-SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAVLVNWKSELHKWLP 1074 (1953)
Q Consensus 997 ~ggkLRPYQleGL~WLl-sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP~SLL~QW~~Ef~KwaP 1074 (1953)
..++|++||.+|+.|+. .++....+|||||+||+|||+|+|+++.++.+.... .+|+|||||.+++.||.+||.+|+|
T Consensus 335 ~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~ 414 (866)
T COG0553 335 LSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAP 414 (866)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCc
Confidence 34689999999999999 899999999999999999999999999986665444 5899999999999999999999999
Q ss_pred CCe-EEEEecchhh----HhHHHHHHHhh---ccccEEEEeHHHHHh---hhhcccccCccEEEcccccccCCchhHHHH
Q 000169 1075 SVS-CIYYVGAKDQ----RSRLFSQEVAA---LKFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (1953)
Q Consensus 1075 slk-Vvvy~Gs~de----Rk~l~~qei~~---~~fdVVITTYEsL~k---d~s~L~kikWd~VIIDEAHrLKN~~SKlsr 1143 (1953)
.++ +.+++|.... +..+ ...... ..|+|++|||+.+.. +...+..+.|+++|+||||++||..+..++
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~ 493 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREAL-RDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGK 493 (866)
T ss_pred cccceeeeeCCcccccHHHHHH-HHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHH
Confidence 999 9999998753 2222 111111 238999999999999 899999999999999999999999999999
Q ss_pred HhhhcccceeEEecccCCCCCHHHHHHHHh-hhcccccC-ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLN-LLLPEVFD-NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1144 aLk~L~a~~RLLLTGTPLQNnL~ELwSLLn-FLlP~iF~-S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
++..+++.++++|||||++|++.|||++++ |++|++++ +...|..||..|......... .+.....+.+|+
T Consensus 494 ~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~ 566 (866)
T COG0553 494 ALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP-------LEARELGIELLR 566 (866)
T ss_pred HHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc-------hhhHHHHHHHHH
Confidence 999999999999999999999999999999 99999999 559999999999877643321 122233455699
Q ss_pred HHhhHHHHHHHHhh--hhcCCCCceEEEEEeccCHHHHHHHHHHHHcc---CcccCchhHHhhhhcChhhHHH--HHHHH
Q 000169 1222 QILEPFMLRRRVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG---TLRVDPEDEKRRVQKNPIYQAK--VYKTL 1294 (1953)
Q Consensus 1222 klLrPFmLRRlKkD--VekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~---~l~ld~~~ek~~l~kn~~~~ak--~~~sL 1294 (1953)
.++.||++||++.+ +..+||++.+.++.|.|+..|..+|..+.... ...+.... ......... ....+
T Consensus 567 ~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 641 (866)
T COG0553 567 KLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLE-----KADSDENRIGDSELNI 641 (866)
T ss_pred HHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccccccccchhhHH
Confidence 99999999999999 89999999999999999999999999886622 11100000 000000000 24567
Q ss_pred HHHHHHHHHhcCCCCCCCCC-cc---------------ccchhhhhhcc-cHHHHHHHHH-HHHHhcCC--eeEEeechh
Q 000169 1295 NNRCMELRKTCNHPLLNYPY-FS---------------DLSKDFLVKSC-GKLWILDRIL-IKLQRTGH--RVLLFSTMT 1354 (1953)
Q Consensus 1295 ~nilmqLRKiCNHP~L~~p~-l~---------------dls~d~Li~~S-GKLelLdrIL-~kLkatGh--KVLIFSQft 1354 (1953)
.+.++.||++|+||.++... .. ......++..| +|+..++++| ..+...++ |||||++|+
T Consensus 642 l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t 721 (866)
T COG0553 642 LALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFT 721 (866)
T ss_pred HHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcH
Confidence 88899999999999998765 11 11123456778 9999999999 89999999 999999999
Q ss_pred HHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhh
Q 000169 1355 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434 (1953)
Q Consensus 1355 ~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QA 1434 (1953)
.++++|+.+|...++.|+++||+++...|..++++|+++ ..++|||+|++|||.||||+.|++||+||+||||..+.||
T Consensus 722 ~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa 800 (866)
T COG0553 722 PVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQA 800 (866)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHH
Confidence 999999999999999999999999999999999999985 6789999999999999999999999999999999999999
Q ss_pred hhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000169 1435 VARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (1953)
Q Consensus 1435 iGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqA 1512 (1953)
++|+|||||+++|.||++++ .++|||+|+. ++..|..+...++++
T Consensus 801 ~dRa~RigQ~~~v~v~r~i~--------------------------------~~tiEe~i~~-~~~~K~~l~~~~~~~ 845 (866)
T COG0553 801 IDRAHRIGQKRPVKVYRLIT--------------------------------RGTIEEKILE-LQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHhcCcceeEEEEeec--------------------------------CCcHHHHHHH-HHHHHHHHHHHHhhh
Confidence 99999999999999999976 4899999998 578899999999986
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.4e-63 Score=606.39 Aligned_cols=478 Identities=26% Similarity=0.399 Sum_probs=380.3
Q ss_pred hhhhccCCcccCCCCCcHHHHHHHHHHHHhhc---------CCCCeEEEcCCCchHHHHHHHHHHHHH-HHhCCCCCeEE
Q 000169 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYN---------NKLNGILADEMGLGKTVQVMALIAYLM-EFKGNYGPHLI 1055 (1953)
Q Consensus 986 ~E~v~eqPs~L~ggkLRPYQleGL~WLlsL~~---------n~lnGILADEMGLGKTIQAIALIa~Ll-e~kg~~GP~LI 1055 (1953)
.+.....|..|.. +|+|||..||+||+.... .+.|||||+-||||||+|+|+|+..++ ..+-....+||
T Consensus 655 ~e~~VqV~rslv~-kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLv 733 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVI-KLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALV 733 (1567)
T ss_pred ccchhhccHhHHh-hcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEE
Confidence 3455566766654 899999999999997542 578999999999999999999986654 34556779999
Q ss_pred EechHHHHHHHHHHHHHCCCC------eEEEEe--cchhhHhHHHHHHHhhccccEEEEeHHHHHhh-------------
Q 000169 1056 IVPNAVLVNWKSELHKWLPSV------SCIYYV--GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------------- 1114 (1953)
Q Consensus 1056 VVP~SLL~QW~~Ef~KwaPsl------kVvvy~--Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd------------- 1114 (1953)
|||.+++.||.+||.+|.+++ .|..+. ..+..|...+.. ....-.|+|+-|+.++..
T Consensus 734 V~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~--W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke 811 (1567)
T KOG1015|consen 734 VCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQR--WQEDGGVMIIGYDMYRNLAQGRNVKSRKLKE 811 (1567)
T ss_pred EcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHH--HHhcCCEEEEehHHHHHHhcccchhhhHHHH
Confidence 999999999999999999862 222221 223344333332 233448999999998643
Q ss_pred --hhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000169 1115 --RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (1953)
Q Consensus 1115 --~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~k 1192 (1953)
...|..-..|+||+||||-|||..+.+++++..+.+++||+|||||+||||.|++++++|+.|+++++...|...|..
T Consensus 812 ~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvN 891 (1567)
T KOG1015|consen 812 IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVN 891 (1567)
T ss_pred HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcC
Confidence 122344478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC
Q 000169 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1272 (1953)
Q Consensus 1193 Pf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld 1272 (1953)
|+.++...+....+... .-.-.+.|+.+|..|+-|+--.-+.++||||.++||.+.||+.|..||.++..+.... .
T Consensus 892 pI~nGq~~dST~~DVr~---Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~-G 967 (1567)
T KOG1015|consen 892 PIQNGQCADSTMVDVRV---MKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGV-G 967 (1567)
T ss_pred ccccCccCCCcHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcccc-C
Confidence 99988665544322211 1112466899999999999998899999999999999999999999999988743221 1
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC------------------CCc---c---------------
Q 000169 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY------------------PYF---S--------------- 1316 (1953)
Q Consensus 1273 ~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~------------------p~l---~--------------- 1316 (1953)
...+ +. ...-+.|+....-|++|++||+... .++ .
T Consensus 968 ~d~e-----g~----~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~ 1038 (1567)
T KOG1015|consen 968 NDSE-----GG----RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKK 1038 (1567)
T ss_pred Cccc-----cc----cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhc
Confidence 1111 00 1123566777788999999998610 000 0
Q ss_pred ---------cc------------------------------------ch------------------------h------
Q 000169 1317 ---------DL------------------------------------SK------------------------D------ 1321 (1953)
Q Consensus 1317 ---------dl------------------------------------s~------------------------d------ 1321 (1953)
+. .. +
T Consensus 1039 ~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d 1118 (1567)
T KOG1015|consen 1039 KKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEAD 1118 (1567)
T ss_pred ccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhh
Confidence 00 00 0
Q ss_pred -hhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH----------------------cCCeEEeecCCC
Q 000169 1322 -FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----------------------RQLVYRRIDGTT 1378 (1953)
Q Consensus 1322 -~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~----------------------rGikylRLDGsT 1378 (1953)
..+..|||+-+|.+||..+.+-|.|+|||+|....+|+|++||.. +|..|.||||++
T Consensus 1119 ~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst 1198 (1567)
T KOG1015|consen 1119 AEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGST 1198 (1567)
T ss_pred hhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcc
Confidence 124568999999999999999999999999999999999999962 367799999999
Q ss_pred CHHHHHHHHHHhhcCC-CCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhh
Q 000169 1379 SLEDRESAIVDFNSHD-SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVD 1457 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~d-s~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEE 1457 (1953)
....|.++.++||++. -..++|||||+||++||||-+|+.|||||-.|||..+.|+|-|++|.||+|+|+||+|++
T Consensus 1199 ~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA--- 1275 (1567)
T KOG1015|consen 1199 TSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA--- 1275 (1567)
T ss_pred cHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh---
Confidence 9999999999999864 457899999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000169 1458 KISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (1953)
Q Consensus 1458 kI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqA 1512 (1953)
.+++|++|++| +-.|..++-.|++.
T Consensus 1276 -----------------------------qGTmEeKIYkR-QVTKqsls~RVVDe 1300 (1567)
T KOG1015|consen 1276 -----------------------------QGTMEEKIYKR-QVTKQSLSFRVVDE 1300 (1567)
T ss_pred -----------------------------cccHHHHHHHH-HHhHhhhhhhhhhH
Confidence 36677777665 45566666666654
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=6.8e-63 Score=575.13 Aligned_cols=465 Identities=32% Similarity=0.448 Sum_probs=377.7
Q ss_pred hhccCCcccCCCCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 988 ~v~eqPs~L~ggkLRPYQleGL~WLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
+-.+||..|. ..|-|||++||.|+..... .-.|||||||||.|||||+|+|++. .....|+|||||.-.+.||.
T Consensus 173 e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~ 247 (791)
T KOG1002|consen 173 ERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWK 247 (791)
T ss_pred hcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHH
Confidence 3457998876 4799999999999998765 5578999999999999999999875 23446899999999999999
Q ss_pred HHHHHHC-CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh-----------------hhcccccCccEEEc
Q 000169 1067 SELHKWL-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD-----------------RSKLSKVDWKYIII 1128 (1953)
Q Consensus 1067 ~Ef~Kwa-PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd-----------------~s~L~kikWd~VII 1128 (1953)
+||.+++ +.+++++|+|...... ......||||+|||..+-.. .+.|..++|..||+
T Consensus 248 nEI~~~T~gslkv~~YhG~~R~~n-----ikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIl 322 (791)
T KOG1002|consen 248 NEIERHTSGSLKVYIYHGAKRDKN-----IKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIIL 322 (791)
T ss_pred HHHHHhccCceEEEEEecccccCC-----HHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeeh
Confidence 9999998 4689999999765432 12356899999999887432 45688899999999
Q ss_pred ccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCCh-------------------------
Q 000169 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------------- 1183 (1953)
Q Consensus 1129 DEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------------------------- 1183 (1953)
||||.||+..|...+++..+.+.+||+|||||+||++.|||+|+.||....|.-+
T Consensus 323 DEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h 402 (791)
T KOG1002|consen 323 DEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSH 402 (791)
T ss_pred hhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccc
Confidence 9999999999999999999999999999999999999999999999977665310
Q ss_pred ------HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhc--CCCCceEEEEEeccCHH
Q 000169 1184 ------KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAI 1255 (1953)
Q Consensus 1184 ------k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVek--dLPpKvE~vV~c~MSa~ 1255 (1953)
-.|...+.+|+...|.... ........|.++..+|+||+|-+-.. .|||.+..+..=.++..
T Consensus 403 ~~m~h~~~~n~~mlk~IqkfG~eGp----------Gk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~e 472 (791)
T KOG1002|consen 403 NIMQHTCFFNHFMLKPIQKFGVEGP----------GKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEE 472 (791)
T ss_pred hhhhhhhhhcccccccchhhcccCc----------hHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhH
Confidence 0122223345544433211 11223467889999999999876444 48999999888889999
Q ss_pred HHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCC-----------------cccc
Q 000169 1256 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-----------------FSDL 1318 (1953)
Q Consensus 1256 Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~-----------------l~dl 1318 (1953)
+..+|+.+........+...+...+.. .|..+...+.+||+++.||+|..-. ..+.
T Consensus 473 E~D~YeSLY~dSkrkfntyieeGvvlN-------NYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ 545 (791)
T KOG1002|consen 473 EKDLYESLYKDSKRKFNTYIEEGVVLN-------NYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDP 545 (791)
T ss_pred HHHHHHHHHHhhHHhhhhHHhhhhhhh-------hHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCCh
Confidence 999999886554444444333333322 3788899999999999999984210 0000
Q ss_pred chh-----------------------------------------------------------------hhhhcccHHHHH
Q 000169 1319 SKD-----------------------------------------------------------------FLVKSCGKLWIL 1333 (1953)
Q Consensus 1319 s~d-----------------------------------------------------------------~Li~~SGKLelL 1333 (1953)
..+ .-+..|.|+++|
T Consensus 546 aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL 625 (791)
T KOG1002|consen 546 AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEAL 625 (791)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHH
Confidence 000 025567899999
Q ss_pred HHHHHHHHhcC--CeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccccccc
Q 000169 1334 DRILIKLQRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1411 (1953)
Q Consensus 1334 drIL~kLkatG--hKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGL 1411 (1953)
.+-|..+++.+ -|.|||+|||.++|+|.-.|...|+.++.|.|+|++..|...|+.|.+ +.+|+|||+|.+|||..|
T Consensus 626 ~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVAL 704 (791)
T KOG1002|consen 626 VEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVAL 704 (791)
T ss_pred HHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEe
Confidence 98888886655 479999999999999999999999999999999999999999999986 889999999999999999
Q ss_pred CCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHH
Q 000169 1412 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIE 1491 (1953)
Q Consensus 1412 NLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIE 1491 (1953)
||+.|++|+++||||||....||++|+|||||.++|+|++|+. .+|||
T Consensus 705 NLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i--------------------------------EnsiE 752 (791)
T KOG1002|consen 705 NLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI--------------------------------ENSIE 752 (791)
T ss_pred eechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh--------------------------------hccHH
Confidence 9999999999999999999999999999999999999999963 37999
Q ss_pred HHHHHHHHHhhhHHHHHHHhcc
Q 000169 1492 GLIRNNIQQYKIDMADEVINAG 1513 (1953)
Q Consensus 1492 E~IlerLq~~KldIddkVIqAG 1513 (1953)
++|++ ++++|.+|....|+..
T Consensus 753 ~kIie-LQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 753 EKIIE-LQEKKANMIHATIGQD 773 (791)
T ss_pred HHHHH-HHHHHhhhhhhhcCCc
Confidence 99998 8899999888888653
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.1e-60 Score=569.42 Aligned_cols=467 Identities=26% Similarity=0.414 Sum_probs=380.6
Q ss_pred hccCCcccCCCCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH
Q 000169 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA 1060 (1953)
Q Consensus 989 v~eqPs~L~ggkLRPYQleGL~WLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~S 1060 (1953)
+++.|..+. ..|.|||..|+.||+.... .+.||||||+||+|||+..|++|..-.... ....++|||||.+
T Consensus 315 lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 315 LTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred ccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 456777764 4899999999999998755 457899999999999999999997654321 1223699999999
Q ss_pred HHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHh----------hhhcccccCccEEEc
Q 000169 1061 VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY----------DRSKLSKVDWKYIII 1128 (1953)
Q Consensus 1061 LL~QW~~Ef~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~k----------d~s~L~kikWd~VII 1128 (1953)
++.||..||.+... .+.|++|+|+.. +.+. ......||||||||..+.+ ....|..+.|.+||+
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~--r~i~--~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVIL 469 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK--REIS--AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVIL 469 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc--ccCC--HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhh
Confidence 99999999998874 489999999874 1221 2335689999999998876 245688899999999
Q ss_pred ccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000169 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (1953)
Q Consensus 1129 DEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l 1208 (1953)
||||.++|+.++.+.++..+.+.+||+|||||++|++-|+|+|+.||.-..|++...|.+|+..+-...
T Consensus 470 DEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g----------- 538 (901)
T KOG4439|consen 470 DEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG----------- 538 (901)
T ss_pred hhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999986542221
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhhc-----CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCc----------
Q 000169 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEG-----SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP---------- 1273 (1953)
Q Consensus 1209 ~eEek~liI~RLhklLrPFmLRRlKkDVek-----dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~---------- 1273 (1953)
..||.-+..+.||||+|..+.. .||.+...++.+.|+..+...|+-+.......+..
T Consensus 539 --------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~ 610 (901)
T KOG4439|consen 539 --------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNN 610 (901)
T ss_pred --------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3467778899999999998766 79999999999999999999997653321110000
Q ss_pred --h--h-----HH----------hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----------------
Q 000169 1274 --E--D-----EK----------RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD----------------- 1317 (1953)
Q Consensus 1274 --~--~-----ek----------~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d----------------- 1317 (1953)
. . .. ...+....+.......++-.+++||++|+||-+....+..
T Consensus 611 ~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e 690 (901)
T KOG4439|consen 611 DGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLE 690 (901)
T ss_pred ccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhh
Confidence 0 0 00 0000001111233455778899999999999542211000
Q ss_pred --------------cch--------------hhhhhcccHHHHHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHcC
Q 000169 1318 --------------LSK--------------DFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368 (1953)
Q Consensus 1318 --------------ls~--------------d~Li~~SGKLelLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~rG 1368 (1953)
... -...+.|.|+..+..+|..+ ....+|++|.+||+.++++++..|...|
T Consensus 691 ~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g 770 (901)
T KOG4439|consen 691 EDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGG 770 (901)
T ss_pred hhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCC
Confidence 000 01234678888888888877 6678999999999999999999999999
Q ss_pred CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1369 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1369 ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+.|..++|.+..++|+.+|+.||..++..+|+|||.-|||.||||..|+|+|++|..|||+.+.||.+|++|+||+|+|+
T Consensus 771 ~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 771 HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000169 1449 VIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (1953)
Q Consensus 1449 VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqA 1512 (1953)
||+|+. .++||++|.. ++..|++++.-|+..
T Consensus 851 IhR~~~--------------------------------~gTvEqrV~~-LQdkKldlA~~VL~G 881 (901)
T KOG4439|consen 851 IHRLMC--------------------------------KGTVEQRVKS-LQDKKLDLAKGVLTG 881 (901)
T ss_pred EEEEEe--------------------------------cCcHHHHHHH-HHHHHHHHHhhhccC
Confidence 999975 4899999987 899999999999974
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=9.5e-52 Score=495.82 Aligned_cols=482 Identities=32% Similarity=0.470 Sum_probs=364.4
Q ss_pred CCCcHHHHHHHHHHHHh-------hc--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSL-------YN--NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL-------~~--n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
..|+|||+-||+||... |+ .+.|||||+.||||||+|+|+++--++. .-..+.+|+|||-.++.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHHHHHHHHHh
Confidence 37999999999998742 22 5789999999999999999999988775 45667899999999999999999
Q ss_pred HHHCCC-----------CeEEEEecc---hhhHhHHHHHHHhhccccEEEEeHHHHHhh---------------------
Q 000169 1070 HKWLPS-----------VSCIYYVGA---KDQRSRLFSQEVAALKFNVLVTTYEFIMYD--------------------- 1114 (1953)
Q Consensus 1070 ~KwaPs-----------lkVvvy~Gs---~deRk~l~~qei~~~~fdVVITTYEsL~kd--------------------- 1114 (1953)
..|.|. +.|.+.... -+.|.+++.++ ...-.|+++-|++++-.
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~W--v~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~ 409 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQW--VQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSG 409 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHH--hccCCEEEehHHHHHHHHHhcccccCCccccccccCCc
Confidence 999874 344444332 23444444332 34557999999987532
Q ss_pred -----------------hhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcc
Q 000169 1115 -----------------RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1177 (1953)
Q Consensus 1115 -----------------~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP 1177 (1953)
...|.+-..|+||+||+|+|||....++.+|+.+++++|+.|||-|+||+|-|+|++++|+.|
T Consensus 410 ~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP 489 (1387)
T KOG1016|consen 410 FIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRP 489 (1387)
T ss_pred ccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccc
Confidence 112333357999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHH
Q 000169 1178 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQS 1257 (1953)
Q Consensus 1178 ~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr 1257 (1953)
..+++..+|...|.+|+.++...+..-++... ..+-.+.||.+|..|+-||.-.-+..-||.+.|++|.+.||..|+
T Consensus 490 ~yLGTR~eF~nmFErPI~NGQCvDStPdDvkl---mryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR 566 (1387)
T KOG1016|consen 490 KYLGTRKEFINMFERPIKNGQCVDSTPDDVKL---MRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQR 566 (1387)
T ss_pred cccchHHHHHHHhhccccCCccccCChhHHHH---HHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHH
Confidence 99999999999999999998776665544322 233467899999999999999988889999999999999999999
Q ss_pred HHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCcc---------------------
Q 000169 1258 AIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS--------------------- 1316 (1953)
Q Consensus 1258 ~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~--------------------- 1316 (1953)
.+|+.+..... +....+... .+.-| ..+.-..||+|||.+.|..+.
T Consensus 567 ~LY~~Fm~d~~---------r~~~~~~~~---~~NPL-kAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~ 633 (1387)
T KOG1016|consen 567 QLYRNFMLDAK---------REIAANNDA---VFNPL-KAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQ 633 (1387)
T ss_pred HHHHHHHHHHH---------Hhhcccccc---ccChH-HHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccc
Confidence 99987642111 101000000 00001 112234556677754221100
Q ss_pred -----------------------------------------ccch-----------------hhhhhcccHHHHHHHHHH
Q 000169 1317 -----------------------------------------DLSK-----------------DFLVKSCGKLWILDRILI 1338 (1953)
Q Consensus 1317 -----------------------------------------dls~-----------------d~Li~~SGKLelLdrIL~ 1338 (1953)
+... .-+...+.|+.++.+++.
T Consensus 634 ~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~d 713 (1387)
T KOG1016|consen 634 QQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILD 713 (1387)
T ss_pred ccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeec
Confidence 0000 001222344444445555
Q ss_pred HHHhcCCeeEEeechhHHHHHHHHHHHHc------------------CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1339 KLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1339 kLkatGhKVLIFSQft~~LDILed~L~~r------------------GikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
+-..-|.++|||++....+|.|+++|..+ ...|+++||.++..+|+++|++||++-+-...|
T Consensus 714 es~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlf 793 (1387)
T KOG1016|consen 714 ESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLF 793 (1387)
T ss_pred cccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeee
Confidence 55566899999999999999999999865 346899999999999999999999855444689
Q ss_pred EEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccCCcccchhhh
Q 000169 1401 LLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDL 1480 (1953)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl 1480 (1953)
||||++|..||||-.|+.||+||..|||..+.||++|++|+||+|+|.||+|+.
T Consensus 794 llstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVm-------------------------- 847 (1387)
T KOG1016|consen 794 LLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVM-------------------------- 847 (1387)
T ss_pred eehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehh--------------------------
Confidence 999999999999999999999999999999999999999999999999999965
Q ss_pred cccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhhhh
Q 000169 1481 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1536 (1953)
Q Consensus 1481 ~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ee 1536 (1953)
-.++|..|+.| +-.|..|.+.|++.-.-+..-+.. .|+.|+...+
T Consensus 848 ------D~~lEkkIydR-QIsKqGmsdRvVDd~np~an~s~K----e~enLl~~~e 892 (1387)
T KOG1016|consen 848 ------DNSLEKKIYDR-QISKQGMSDRVVDDANPDANISQK----ELENLLMYDE 892 (1387)
T ss_pred ------hhhhHHHHHHH-HHhhccchhhhhcccCccccccHH----HHHHHhhhhh
Confidence 14677777765 456777777777665444333333 4556665443
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.9e-50 Score=519.09 Aligned_cols=410 Identities=20% Similarity=0.237 Sum_probs=296.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV 1078 (1953)
..|.|||+..+.++...+ ..+.||||||||||||++++++.+++. .+..+|+|||||.+|+.||..|+.+|+. +..
T Consensus 151 ~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRFN-LRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHhC-CCe
Confidence 369999999998776543 456799999999999999999888774 6777899999999999999999988874 445
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCCc---hhHHHHHhhhc--cc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY--RC 1150 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L--~a 1150 (1953)
.+|.+........ ........++++|+||+++.++. ..+....|++|||||||+++|. .++.++.+..+ .+
T Consensus 227 ~i~~~~~~~~~~~-~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 227 SLFDEERYAEAQH-DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred EEEcCcchhhhcc-cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 5554432111000 00012235789999999998753 4466779999999999999953 46678888777 56
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC--Cc-------ccCCCCCCCChhhHHH-----------
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ--PF-------QKEGPTHNADDDWLET----------- 1210 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~k--Pf-------~k~g~~~~~e~d~l~e----------- 1210 (1953)
+++|+|||||++|+..|+|++|+||+|+.|++...|.+.... |+ .............+..
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 789999999999999999999999999999999999765432 11 0111000000000000
Q ss_pred -----------HHHHHHHHHHHHH--hhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHH-HHHccCcccCchhH
Q 000169 1211 -----------EKKVIIIHRLHQI--LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW-IKATGTLRVDPEDE 1276 (1953)
Q Consensus 1211 -----------Eek~liI~RLhkl--LrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~-I~~~~~l~ld~~~e 1276 (1953)
.....++..|... ...+|+|+++.+|. .+|.+..+.+.+++++.....+.. +..
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~~~~----------- 453 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVSLEA----------- 453 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHhHHH-----------
Confidence 0011111111111 23678899999986 489999999999887654333321 000
Q ss_pred HhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHH
Q 000169 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL 1356 (1953)
Q Consensus 1277 k~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~ 1356 (1953)
.++. |.+|...+..+. ....-+..+.|++.|..+|..+ .+.||||||++..+
T Consensus 454 -----------------------~~~~-~l~pe~~~~~~~--~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t 505 (956)
T PRK04914 454 -----------------------RARD-MLYPEQIYQEFE--DNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAAT 505 (956)
T ss_pred -----------------------HHHh-hcCHHHHHHHHh--hhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHH
Confidence 0000 011100000000 0000123467999999988764 37899999999999
Q ss_pred HHHHHHHH-HHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhh
Q 000169 1357 LDILEEYL-QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1435 (1953)
Q Consensus 1357 LDILed~L-~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAi 1435 (1953)
++.|.+.| ...|+++..+||+++..+|.++++.|+.+++.+. |||||++||+||||+.|++||+||+||||..|+||+
T Consensus 506 ~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRI 584 (956)
T PRK04914 506 ALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRI 584 (956)
T ss_pred HHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHh
Confidence 99999999 4679999999999999999999999997554555 477889999999999999999999999999999999
Q ss_pred hcccccCCcceEEEEEEeh
Q 000169 1436 ARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1436 GRAhRIGQKKeV~VyrLvT 1454 (1953)
||+||+||++.|.||+++.
T Consensus 585 GR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 585 GRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred cccccCCCCceEEEEEccC
Confidence 9999999999999998754
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-49 Score=465.33 Aligned_cols=419 Identities=27% Similarity=0.342 Sum_probs=318.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC- 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV- 1078 (1953)
.|.|||++||.+.+. .+.++|||||||||||+|+|++..|... .+|.|||||.++...|..++.+|+|....
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 699999999999885 4556799999999999999998877653 46999999999999999999999998655
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc--ccceeEEe
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLL 1156 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L--~a~~RLLL 1156 (1953)
.+..+..+.-. .......|.|.||+.+......|..-+|.+||+||+|++|+..+++++++.-+ .+.+.|||
T Consensus 271 ~vv~~~~D~~~------~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPLP------DVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCcc------ccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEe
Confidence 23333333210 11223468999999999999999998999999999999999999999988866 67899999
Q ss_pred cccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH-HHHHHHHhh
Q 000169 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLRRRVED 1235 (1953)
Q Consensus 1157 TGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP-FmLRRlKkD 1235 (1953)
||||.-..+.|||.++..+++.+|.+..+|-..|..--...-..+. .+.....+|+-+|.. .|+||+|.+
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dy---------kg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDY---------KGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeec---------CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887766432111000000 001123457777754 599999999
Q ss_pred hhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 000169 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1315 (1953)
Q Consensus 1236 VekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l 1315 (1953)
|+++||+|...++.+ ....+-+..+.+.......... ..|+-.+.|.- ++|
T Consensus 416 vL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t~~-----------------------~~~e~~~~~l~--l~y--- 466 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYV-SGGRIDARMDDLVKAAADYTKV-----------------------NSMERKHESLL--LFY--- 466 (689)
T ss_pred HHhhCCccceEEEEE-cCCccchHHHHHHHHhhhcchh-----------------------hhhhhhhHHHH--HHH---
Confidence 999999996655543 2333333333332211100000 00000000000 000
Q ss_pred cccchhhhhhcccHHHHHHHHHHH----HHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1316 SDLSKDFLVKSCGKLWILDRILIK----LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1316 ~dls~d~Li~~SGKLelLdrIL~k----LkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
-...-.|+..+.+.|.. ..+.+.|+||||....++|-|+.++..+++.++||||+|+..+|..+++.|+
T Consensus 467 -------~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ 539 (689)
T KOG1000|consen 467 -------SLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ 539 (689)
T ss_pred -------HHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc
Confidence 00111233333333333 3467889999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhccC
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSG 1471 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~Ls~ 1471 (1953)
. +.++.|-+||..|+|.||+|++|+.|+|..++|||...+||.||+|||||+..|.|+||++
T Consensus 540 ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvA----------------- 601 (689)
T KOG1000|consen 540 T-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVA----------------- 601 (689)
T ss_pred c-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEe-----------------
Confidence 6 6789999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHH
Q 000169 1472 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1510 (1953)
Q Consensus 1472 gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVI 1510 (1953)
++++++.++..+ ..|+++...+-
T Consensus 602 ---------------KgT~Ddy~Wp~l-~~KL~vl~s~g 624 (689)
T KOG1000|consen 602 ---------------KGTADDYMWPML-QQKLDVLGSVG 624 (689)
T ss_pred ---------------cCchHHHHHHHH-HHHHHHHhhcc
Confidence 589999999976 55777665543
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=9.1e-51 Score=505.25 Aligned_cols=388 Identities=40% Similarity=0.617 Sum_probs=344.5
Q ss_pred ccCCcccC--CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 990 MRQPSMLR--AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 990 ~eqPs~L~--ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
..+|..+. ++.|.+||.+|++|+...+..+-.+|||||||+|||+++|.++..++......+|+||++|.+++.+|..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 46777665 5899999999999999999999999999999999999999999999887778899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHH-------------------HhhccccEEEEeHHHHHhhhhcccccCccEEEc
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQE-------------------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIII 1128 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qe-------------------i~~~~fdVVITTYEsL~kd~s~L~kikWd~VII 1128 (1953)
|+..|+|.+.++.|.|+.+.|.-+.... .....|+|.+++|+++..+...+..+.|.++|+
T Consensus 363 e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~liv 442 (696)
T KOG0383|consen 363 EFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIV 442 (696)
T ss_pred chhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEe
Confidence 9999999999999999988765442111 124578999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000169 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (1953)
Q Consensus 1129 DEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l 1208 (1953)
||+|+++|..+++.+.+..+...++++|||||++|++.+|+++|+||.|+.|++...|.+.|..-
T Consensus 443 de~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~--------------- 507 (696)
T KOG0383|consen 443 DEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI--------------- 507 (696)
T ss_pred echhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------
Confidence 99999999999999999999999999999999999999999999999999999998888876421
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHH
Q 000169 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1288 (1953)
Q Consensus 1209 ~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~a 1288 (1953)
.....+..||.++.|+++||++.||.+.+|.|.+.++.+.|+..|+.+|+.+.......+.. .
T Consensus 508 ---~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--------------~ 570 (696)
T KOG0383|consen 508 ---SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--------------G 570 (696)
T ss_pred ---hHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh--------------c
Confidence 12235788999999999999999999999999999999999999999999987654222111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHH
Q 000169 1289 KVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1363 (1953)
Q Consensus 1289 k~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~ 1363 (1953)
...-.++|++|+|||+|||||++...... .....++..++|+.+|..++++++..|||||||+||+.++|+|+++
T Consensus 571 ~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~ 650 (696)
T KOG0383|consen 571 VHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDY 650 (696)
T ss_pred chhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHH
Confidence 12356789999999999999998762211 1234578999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccc
Q 000169 1364 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1410 (1953)
Q Consensus 1364 L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeG 1410 (1953)
|...+ .|.|+||.....+|+.+|++||.+++.-||||+||+|||+|
T Consensus 651 ~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 651 LTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999 99999999999999999999999999999999999999998
No 19
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.6e-51 Score=506.47 Aligned_cols=918 Identities=27% Similarity=0.223 Sum_probs=685.1
Q ss_pred CCCCccccccCCCCCCCccccccCccccchHHHHHHHHhhhhcchHHHHhhcCCCcc-hhhhhcccCCCCcccCCCCCCC
Q 000169 8 SRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRKPDGN-EAILAYQVGSLPGLMGGGNFAS 86 (1953)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (1953)
..+++.|+++|+++.+.++..+.++- +..|+++. +++.-..-|++.++..++| +...+|++|++++|+++++|.+
T Consensus 14 ~~~~~~s~~~a~~~~sr~~~l~~~~~---~~~~~~~~-q~q~~~~~q~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 89 (1157)
T KOG0386|consen 14 PAGRTRSTISALSPLSRSSPLQQQQQ---QAVQQQQP-QQQLASRQQQQQHRPLDTNLENMFAYQPGGVQLMMGGGNFLS 89 (1157)
T ss_pred ccchhHHHHHhhhhhhhcCCCchhhH---HHHhhhhh-hhhhccHHHHhccCCCCCCcccccccCCCchhhccccccccC
Confidence 44777788888887666655443210 11111110 1111123366778888898 8999999999999999999999
Q ss_pred CCCCCCCCcchhhhhhHHhhhhhhhhccccccc-----cccccccHHHHHHHHHHHHHHhhhhHhHhHHhhhh--hcCCC
Q 000169 87 PPGSMQPPQQSRKFFDFAQQHAISQESQNRSQG-----VEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAK--LGMLG 159 (1953)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 159 (1953)
+|++|++|+++|.||...++.+..+.-.+..++ .-++..+++|++|++++++++.|+. |+++. |||++
T Consensus 90 ~p~~~~~~~~~r~~~~sp~~~~~~q~~~~~~~~~~~~~l~~~~~~~~q~~~i~~~~~~~lq~~-----q~~~~~~~~~~~ 164 (1157)
T KOG0386|consen 90 SPGSMQMPQQSRNFFESPQQPQQQQQQGSSTQEGKITPLDQQNINPMQQARIQFRMQAQLQEL-----QQLARSLMGELK 164 (1157)
T ss_pred CCCcccccCCCcccccCCCchhhhcccccccCcCccccCCcccccHHHHHHHHHHHHHHHHHH-----HHhhhcchHHHh
Confidence 999999999999999988766544444333333 4578999999999999999999987 77777 99999
Q ss_pred CCC-CcchhhhccchhhHHhhhhhhhhhhhhccCCCCch--hhcchhhhccCcccc----CccccCCCCCCCCCCcCccC
Q 000169 160 PAS-GKDQDMRMGNLKMQELISMQSANQAQASSSKNSSE--QFGRGEKQMEQPQQQ----VSDQKGEPKPPSQQTLGGQG 232 (1953)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 232 (1953)
..+ ++|++.||+++.||.. ....++-.+.++++.+-. .|.|++.|.++.--. --.||.|.+.- ..+..+++
T Consensus 165 ~~a~~e~~~lrl~~~q~qlr-~~~~~~~~~~~~~~~~~n~~~~~R~~~q~~~~~r~te~Le~qqr~e~erk-~r~~~~~~ 242 (1157)
T KOG0386|consen 165 SSAVGEDQALRLLMLQMQLR-NPVSQPLRRDSSSETALNPKAFKRGKRQTLSEARLTEKLEKQQRLETERK-RRVKHGQF 242 (1157)
T ss_pred hhhhhhhHHHHhHHHHHHHh-hhhhcccccccccccccCHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 887 9999999999999987 444445567788877777 899999998887611 11233322211 56677999
Q ss_pred CCCccccccchhhHHhHHHhhhcchhHHHHHH---HHHHHhccCCCCCcccHhHHHHHhHhHHHHHhhhcccccCCCCCC
Q 000169 233 MAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAP 309 (1953)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1953)
|++++++|++.++.|+..+|+++++.+.++|| ++|+++++||.+++++++.|++ .-|.+|.++.++.+.+..++
T Consensus 243 l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~---~DeE~Y~kl~dq~Kd~Rl~~ 319 (1157)
T KOG0386|consen 243 LPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKH---NDEEGYRKLQDQKKDNRLSQ 319 (1157)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH---hhHHHHHHHHhhccccHHHH
Confidence 99999999999999999999999999999999 7899999999999999887776 46779999999999999999
Q ss_pred CCCcccCCccccccCccCCCC--CCCCCCCCccCCCCCCCCC---CCCCCCCCCCCCcccccccccccccccccccCcCC
Q 000169 310 SSPVPVSKQQVTSPTIAGENS--PHANSSSDVSGQSGSAKAR---PTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDN 384 (1953)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1953)
.-..+.+....-+.+|-.+.+ +|+++.+|++++++++|++ .......+-++..+-..+ ..+|.++++|++.
T Consensus 320 LL~qt~~yl~sL~s~Vk~qk~~~~~~~~~~d~~~i~~~ak~~~~d~~~s~~~Yys~AH~I~E~----v~~Qps~l~GG~L 395 (1157)
T KOG0386|consen 320 LLSQTDSYLPSLSSVVKGQKSENPDANSASDISGISGSAKADVDDHAESNGSYYSTAHPIKEN----VAKQPSSLQGGEL 395 (1157)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccchhhhhhhhhhhhcchhhhhhhcchhHHHhcchhhhc----cccCcchhcCCCC
Confidence 999998888877888878888 9999999999999999999 666666676776666555 3489999999986
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCchhhHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 000169 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLP-V-KNSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGG 462 (1953)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1953)
..-....+---+||+.-|+.+-.+.-+. +....- . .-.---|..+|+-.++++-+.+....+++++.--+- |...-
T Consensus 396 k~YQl~GLqWmVSLyNNnLNGILADEMG-LGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaP-Sv~~i 473 (1157)
T KOG0386|consen 396 KEYQLHGLQWMVSLYNNNLNGILADEMG-LGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAP-SVQKI 473 (1157)
T ss_pred chhhhhhhHHHhhccCCCcccccchhcc-cchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccccc-ceeee
Confidence 6555555555566666677766654423 221111 1 111345677777778888888877777777655441 01111
Q ss_pred CCCCCCccccCcchhHHHHHHHHHHHhhccccCCCCChHHHHHhcCCCccccccccccccccccccccCCCCCCcchhhh
Q 000169 463 LATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQ 542 (1953)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (1953)
.-.+.|+.|.||+++|+| .|.++|+|++.+.+. +.+||..|.+|+...+ ++....++...-.+...+ --..+
T Consensus 474 ~YkGtp~~R~~l~~qir~-gKFnVLlTtyEyiik---dk~lLsKI~W~yMIID---EGHRmKNa~~KLt~~L~t-~y~~q 545 (1157)
T KOG0386|consen 474 QYKGTPQQRSGLTKQQRH-GKFNVLLTTYEYIIK---DKALLSKISWKYMIID---EGHRMKNAICKLTDTLNT-HYRAQ 545 (1157)
T ss_pred eeeCCHHHHhhHHHHHhc-ccceeeeeeHHHhcC---CHHHHhccCCcceeec---ccccccchhhHHHHHhhc-cccch
Confidence 222788999999999999 999999999999988 9999999999999998 788888888877776665 45667
Q ss_pred hcccccCccccccccccCCCCCcccccccCCCCcccCC-CccCCcccc--CCCccccCCCCccccCCcc-cccCchhhhh
Q 000169 543 LRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSP-VGQGMSAVT--KEPAPVVVPGKEEQQAPVS-SVKSDQEVEC 618 (1953)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 618 (1953)
.|-+..++ .+|.--.-++..+...+....+.-.+-.. ..+.+.+.. .+-......-..++...++ +++..+.+..
T Consensus 546 ~RLLLTGT-PLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 546 RRLLLTGT-PLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhcCC-hhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 78888877 66666656666666666555554443322 122222222 2222222233344555566 8888888888
Q ss_pred cccccccccCCCCCCCcccCCCCCccccccccCCCCCCCCCCCCccccccccCCCCCCCCccccccCCCCccccccCCCC
Q 000169 619 GLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNN 698 (1953)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1953)
.-+..| |-..+.+|.++. +--|+.=+.....+..+.|.+..+.|.++|++++.+.||...-+.. ..|-+.+
T Consensus 625 VE~~LP---dKve~viKC~mS-----alQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~l-f~~ve~~ 695 (1157)
T KOG0386|consen 625 VEQELP---DKVEDVIKCDMS-----ALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYL-FANVENS 695 (1157)
T ss_pred HhhhCc---hhhhHhhheehh-----hhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchh-hhhhccc
Confidence 888877 555666776653 2233444455556666778777899999999999999999988444 2145677
Q ss_pred cccccchHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 000169 699 LTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMA 778 (1953)
Q Consensus 699 ~~~~~d~~~l~~~~~~~~~~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~Q~~lr~~~~~~~~~~~~ 778 (1953)
...-+|+.+|+...++.-+-.+++--|+.....+.-....+++.+.+...+.++-+++..|+-|-+.+.... +.+.+.
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~--ll~~FN 773 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGD--LLEIFN 773 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHH--HHHHhc
Confidence 778888899999999987777788888888887776667778889999999999999999999999999887 667888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhhhh
Q 000169 779 MPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILRE-FSKRK 857 (1953)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~e-~~kr~ 857 (1953)
+|+++|..|...+.+.++.+-.|+.......+.+....+..|+++..|.+|..++.+..|..+|.++|++++++ +.|+.
T Consensus 774 ~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~ 853 (1157)
T KOG0386|consen 774 APDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLD 853 (1157)
T ss_pred CCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcC
Confidence 99999999999998888887777654444455556667888999999999999999999999999999999988 77888
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcc----hHHHHHHHHHhHhhhHH---HHHHhhhhhHHhhhhHH-----H
Q 000169 858 DDDRNKRMEALKNNDVERYREMLLEQQTSIPGD----AAERYAVLSSFLTQTEE---YLYKLGSKITAAKNQQE-----V 925 (1953)
Q Consensus 858 ~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d----~~~r~~~l~~LL~qte~---~l~~l~~~v~~~k~~q~-----~ 925 (1953)
.+.+-.++.++..++.+.|++++.++....+++ ...+++.|..+|.++|+ |+++|+......++.+. .
T Consensus 854 ~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl~ 933 (1157)
T KOG0386|consen 854 VDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRLV 933 (1157)
T ss_pred chHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchhh
Confidence 888888999999999999999987765555554 55677789999999999 99999988776555554 4
Q ss_pred HHHHHHHHHHHHhcC---CCHHHHH----HHHHhhhhhHHhhhhhcc
Q 000169 926 EEAANAAAAAARLQG---LSEEEVR----SAAACAGEEVMIRNRFLE 965 (1953)
Q Consensus 926 e~~~~~~~~~~r~~g---l~~ee~~----~~~~~~~ee~~i~~~f~e 965 (1953)
++....+....+..+ +++++.. ....+...++.+.+.+.+
T Consensus 934 ee~e~p~~i~~~~~~~~~~~~~~~~~~~~~rg~r~Rkev~y~d~~te 980 (1157)
T KOG0386|consen 934 EEAELPADIYKRDQGVERLSEEEEEEKILGRGRRARKEVVYSDRLTE 980 (1157)
T ss_pred hhhhcHHHHHhcchhhhhhhhhhhhhccccccccccceeecccccch
Confidence 444444444444444 3433333 122333445555444444
No 20
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.1e-45 Score=462.39 Aligned_cols=443 Identities=30% Similarity=0.433 Sum_probs=350.7
Q ss_pred HHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHHHHHHHHHHCC-
Q 000169 1003 DYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVNWKSELHKWLP- 1074 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~SLL~QW~~Ef~KwaP- 1074 (1953)
.+|..+..|+..... .-.|||+||+||+|||+++|++++....... ..+..|||||.+++.+|..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 444444444433322 3457899999999999999999876543222 45678999999999999999966653
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccccee
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR 1153 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~R 1153 (1953)
.+.+++|+| |.+. ......++||||||..+.. ..+..+.|-.||+||||.++|..+..++++..+.+.+|
T Consensus 215 ~~l~v~v~~g----r~kd---~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~R 285 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKD---KSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYR 285 (674)
T ss_pred cceEEEEecc----cccc---cchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeecccee
Confidence 477888888 1111 1234678899999999875 56777999999999999999999999999999999999
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000169 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (1953)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlK 1233 (1953)
|.|||||+||++.|||+++.|+.-..|.....|...+..|+..... .....++..+|.++++||+|
T Consensus 286 WcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------------~~~~k~l~~~L~~v~lrrtK 351 (674)
T KOG1001|consen 286 WCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------------KEGVKTLQGILKKVMLRRTK 351 (674)
T ss_pred eeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------------HHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999988888755411 22466788999999999988
Q ss_pred hhh-----hcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1234 EDV-----EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1234 kDV-----ekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
..- .-.||++...++.|.++..++.+|+.+.............. ......|..+.-.+.+||++|+||
T Consensus 352 ~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~-------~~~~~~Y~~~l~~lLrlrq~c~h~ 424 (674)
T KOG1001|consen 352 EMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANE-------GTVSSTYAFFLKNLLRLRQACDHS 424 (674)
T ss_pred cccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhh-------chhhhhHHHHHHHHHHHHHHccch
Confidence 632 23699999999999999999999998876543322211111 111234666777788999999999
Q ss_pred CCCCCCccc-----------------c-----------ch-------------------------------------hhh
Q 000169 1309 LLNYPYFSD-----------------L-----------SK-------------------------------------DFL 1323 (1953)
Q Consensus 1309 ~L~~p~l~d-----------------l-----------s~-------------------------------------d~L 1323 (1953)
.++...... + .. ..+
T Consensus 425 ~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 425 LLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred HhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 874311000 0 00 000
Q ss_pred hh-------------cccHHHHHHHHHHHHHhcCC-eeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000169 1324 VK-------------SCGKLWILDRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1324 i~-------------~SGKLelLdrIL~kLkatGh-KVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIer 1389 (1953)
+. .+.|+..+..+|........ ++|||||++.++++++..|...++.+.+++|.++...|.+.+..
T Consensus 505 ~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~ 584 (674)
T KOG1001|consen 505 LSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTD 584 (674)
T ss_pred hhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcc
Confidence 00 13455555555554433333 99999999999999999999999999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhc
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELR 1469 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~L 1469 (1953)
|. .+..+.|+|+|.+|||.||||+.|++||++||+|||..+.||++|+|||||+++|.|++|+.
T Consensus 585 ~~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i--------------- 648 (674)
T KOG1001|consen 585 FP-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFII--------------- 648 (674)
T ss_pred cc-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehh---------------
Confidence 99 58889999999999999999999999999999999999999999999999999999999954
Q ss_pred cCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHH
Q 000169 1470 SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1509 (1953)
Q Consensus 1470 s~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkV 1509 (1953)
+++||++|++ |++.|..+.+..
T Consensus 649 -----------------~dtveer~l~-iq~~K~~~~~~a 670 (674)
T KOG1001|consen 649 -----------------KDTVEERILK-IQEKKREYNASA 670 (674)
T ss_pred -----------------hhccHHHHHH-HHHHHHHHHhhh
Confidence 4799999998 788888876644
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=6.1e-41 Score=382.53 Aligned_cols=280 Identities=37% Similarity=0.685 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC--CCeEEEechHHHHHHHHHHHHH
Q 000169 1004 YQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY--GPHLIIVPNAVLVNWKSELHKW 1072 (1953)
Q Consensus 1004 YQleGL~WLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~--GP~LIVVP~SLL~QW~~Ef~Kw 1072 (1953)
||+.||.||+..+ ....|||||||||+|||+++++++.++....... .++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7788999999999999999999999887643333 3699999999999999999999
Q ss_pred C-C-CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHH-----hhhhcccccCccEEEcccccccCCchhHHHHHh
Q 000169 1073 L-P-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM-----YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1073 a-P-slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~-----kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
+ | .+++++|.|....+... ......++|+|+||+.+. .....+..++|++|||||+|+++|..+..+.++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS---KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT---SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccccccccccccccccccc---ccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 9 4 68888888876222111 223567899999999999 667778888999999999999999999999999
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
..+.+.++|+|||||+.|++.|||++++||.|..+.+...|.++|..+ ..........+|..++.
T Consensus 158 ~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~~L~~~l~ 222 (299)
T PF00176_consen 158 RKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------------DKENSYENIERLRELLS 222 (299)
T ss_dssp HCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------------HHTHHHHHHHHHHHHHC
T ss_pred cccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------------ccccccccccccccccc
Confidence 999999999999999999999999999999999999999999988544 12233445778999999
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
+|++||.++++...||+..+.++.|+|++.|+.+|+.+............ .........+...+++||++|
T Consensus 223 ~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~lr~~c 293 (299)
T PF00176_consen 223 EFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS---------RKKSKKLSSLLQILKRLRQVC 293 (299)
T ss_dssp CCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T-----------TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHHHHHh
Confidence 99999999999889999999999999999999999987665433322211 112245678889999999999
Q ss_pred CCCCC
Q 000169 1306 NHPLL 1310 (1953)
Q Consensus 1306 NHP~L 1310 (1953)
+||+|
T Consensus 294 ~hp~l 298 (299)
T PF00176_consen 294 NHPYL 298 (299)
T ss_dssp H-THH
T ss_pred CCccc
Confidence 99976
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.6e-36 Score=378.66 Aligned_cols=332 Identities=18% Similarity=0.278 Sum_probs=243.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--Ps 1075 (1953)
..|||||.++|.|+.. .....+|||+++||+|||++++++++.+ .+++|||||.. ++.||.++|.+|+ +.
T Consensus 254 ~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 5899999999998863 1112579999999999999999888654 25899999987 5899999999997 34
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----------hhcccccCccEEEcccccccCCchhHHHHHh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----------~s~L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
..+..|.|..... ......|+||||+++... ...|....|++||+||||++.+ ....+.+
T Consensus 327 ~~I~~~tg~~k~~--------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il 396 (732)
T TIGR00603 327 SQICRFTSDAKER--------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRVL 396 (732)
T ss_pred ceEEEEecCcccc--------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHHH
Confidence 5666777753221 123468999999998643 2345556899999999999954 4455567
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFL-lP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
..+.+.+||+|||||++++ +.+..++++ .|.+|.- .|.+ ++
T Consensus 397 ~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~e----------------------------------Li 438 (732)
T TIGR00603 397 TIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWME----------------------------------LQ 438 (732)
T ss_pred HhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHHH----------------------------------HH
Confidence 7788999999999999887 334444443 3433320 0000 00
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
. ...|.+.....++|+|++.....|-.. .. .. .. .| +
T Consensus 439 ---------~--~G~LA~~~~~ev~v~~t~~~~~~yl~~--~~--------~~--------------k~------~l--~ 475 (732)
T TIGR00603 439 ---------K--KGFIANVQCAEVWCPMTPEFYREYLRE--NS--------RK--------------RM------LL--Y 475 (732)
T ss_pred ---------h--CCccccceEEEEEecCCHHHHHHHHHh--cc--------hh--------------hh------HH--h
Confidence 0 134566667789999998754444211 00 00 00 00 0
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
+ ....|+..+..++......++|+||||.++..++.+...| +. ..|+|.|+..+|.
T Consensus 476 ~-------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 476 V-------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERM 531 (732)
T ss_pred h-------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHH
Confidence 0 1235888888888876668999999999999888887777 33 4589999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcce-----EEEEEEeh
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE-----VKVIYMEA 1454 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKe-----V~VyrLvT 1454 (1953)
+++++|+.+ +.+. +|+++++|++||||+.|++||++++++ |+..++||+||+.|.+..+. +.+|.|++
T Consensus 532 ~il~~Fr~~-~~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 532 QILQNFQHN-PKVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred HHHHHHHhC-CCcc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 999999852 2334 466669999999999999999999986 99999999999999997764 67788876
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.6e-33 Score=359.92 Aligned_cols=427 Identities=19% Similarity=0.168 Sum_probs=266.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC--
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS-- 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPs-- 1075 (1953)
.++|+||.+.+..++. .|+|++++||+|||++++.++..++. ...+++|||||+ .|+.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 3789999999887764 28999999999999999988887763 345799999998 5889999999988743
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHHHhh---hccc
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLD---RYRC 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsraLk---~L~a 1150 (1953)
..++.+.|......+ .......+|+|+|++.+..+. ..+....|++|||||||++.+..+..+.+-. ....
T Consensus 87 ~~v~~~~g~~~~~~r----~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEKR----AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHHH----HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 477778775433221 112345799999999998763 3344557999999999999865443322211 2234
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
.++++|||||..+ ...+..+++.|....+..+..|...+...+....... ....+. .....++.+|..++.+
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~--~~v~l~-----~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEW--VRVELP-----EELKEIRDLLNEALKD 234 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEE--EEeCCc-----HHHHHHHHHHHHHHHH
Confidence 5699999999876 5666666666644333222222221111111000000 000011 1234577778888877
Q ss_pred HHHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhh------hcC-hhhHHHHHHHHHHHHHHHH
Q 000169 1231 RRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV------QKN-PIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1231 RlKkDVek-dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l------~kn-~~~~ak~~~sL~nilmqLR 1302 (1953)
+++..... .++.....+....+...+..++..+..... ......... ... ..........+...+..++
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~ 311 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS---EGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLR 311 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 76654322 122222222233334444444444322110 000000000 000 0000000112222222232
Q ss_pred HhcCCCCCCCC---Ccccc-------chhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcCCe
Q 000169 1303 KTCNHPLLNYP---YFSDL-------SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370 (1953)
Q Consensus 1303 KiCNHP~L~~p---~l~dl-------s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~rGik 1370 (1953)
..+.++..... .+.+. ....+....+|+..|.++|.++. ..+.||||||++..+++.|.++|...|+.
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~ 391 (773)
T PRK13766 312 EEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIK 391 (773)
T ss_pred hhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 22211100000 00000 00111234689999999998876 57899999999999999999999999999
Q ss_pred EEeecCC--------CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccC
Q 000169 1371 YRRIDGT--------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1371 ylRLDGs--------Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIG 1442 (1953)
+..++|. ++..+|..++++|+.+... +|++|+++++|+|++.|++||+||++||+..++|+.||++|.|
T Consensus 392 ~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~ 468 (773)
T PRK13766 392 AVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE 468 (773)
T ss_pred eEEEEccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC
Confidence 9999987 8889999999999976544 6889999999999999999999999999999999999999987
Q ss_pred CcceEEEEEEe
Q 000169 1443 QKREVKVIYME 1453 (1953)
Q Consensus 1443 QKKeV~VyrLv 1453 (1953)
+ ++||.|+
T Consensus 469 ~---~~v~~l~ 476 (773)
T PRK13766 469 E---GRVVVLI 476 (773)
T ss_pred C---CEEEEEE
Confidence 6 4455554
No 24
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=1.6e-28 Score=305.17 Aligned_cols=336 Identities=16% Similarity=0.202 Sum_probs=229.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--C
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--P 1074 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--P 1074 (1953)
.++|||||.+++..++. +.+|||..+||+|||++++.++.+++. ...+++|||||+. |+.||.++|.+|. +
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 35899999999977665 567899999999999988776665554 2334899999975 8999999999986 3
Q ss_pred CCeE-EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccce
Q 000169 1075 SVSC-IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQR 1152 (1953)
Q Consensus 1075 slkV-vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~ 1152 (1953)
...+ .++.|.... ...+|+|+|++++.+....+ -.+|++|||||||++... .+...+..+ ++.+
T Consensus 186 ~~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~ 251 (501)
T PHA02558 186 REAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSIITKLDNCKF 251 (501)
T ss_pred ccceeEEecCcccC-----------CCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHHHHhhhccce
Confidence 3333 344443211 34689999999998654322 137899999999999753 344555666 5778
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
+++|||||...... .+.+..++.|-. ... . .. .+
T Consensus 252 ~lGLTATp~~~~~~-~~~~~~~fG~i~---------------~~v------~---------------~~---------~l 285 (501)
T PHA02558 252 KFGLTGSLRDGKAN-ILQYVGLFGDIF---------------KPV------T---------------TS---------QL 285 (501)
T ss_pred EEEEeccCCCcccc-HHHHHHhhCCce---------------EEe------c---------------HH---------HH
Confidence 99999999543321 111222111100 000 0 00 00
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000169 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~ 1312 (1953)
.++ ..+.+.....+.+..+......+ .... +.. .+.
T Consensus 286 i~~--g~l~~~~~~~v~~~~~~~~~~~~---------------------~~~~-----~~~------~~~---------- 321 (501)
T PHA02558 286 MEE--GQVTDLKINSIFLRYPDEDRVKL---------------------KGED-----YQE------EIK---------- 321 (501)
T ss_pred HhC--CCcCCceEEEEeccCCHHHhhhh---------------------cccc-----hHH------HHH----------
Confidence 000 11222223333443332111000 0000 000 001
Q ss_pred CCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhc
Q 000169 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (1953)
Q Consensus 1313 p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs 1392 (1953)
.+.....+..++..++..+...++++||||..+.+++.|.+.|...|+++..++|+++.++|..+++.|+.
T Consensus 322 ---------~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~ 392 (501)
T PHA02558 322 ---------YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG 392 (501)
T ss_pred ---------HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC
Confidence 11122345566666777777788999999999999999999999999999999999999999999999985
Q ss_pred CCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc-eEEEEEEeh
Q 000169 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (1953)
Q Consensus 1393 ~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (1953)
+...|+|.|++.+++|+|++.+|+||+++|+.+...++|++||++|.+..| .|.||.++.
T Consensus 393 --~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 393 --GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred --CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 344566666699999999999999999999999999999999999998776 588998854
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.7e-28 Score=300.82 Aligned_cols=349 Identities=22% Similarity=0.285 Sum_probs=255.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPsl 1076 (1953)
..+||+||.+++.-++..+.....||+..+||.|||+.++.++..+.. ++|||||.. |+.||.+.+.+++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 458999999999888876665788999999999999999999877643 499999976 8999998888887654
Q ss_pred -eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHHHhhhcccce-
Q 000169 1077 -SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR- 1152 (1953)
Q Consensus 1077 -kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~- 1152 (1953)
.+-.+.|..... ....|+|+||+++.+.. ..+...+|++||+|||||+.+...+ ..+..+...+
T Consensus 108 ~~~g~~~~~~~~~----------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~ 175 (442)
T COG1061 108 DEIGIYGGGEKEL----------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYP 175 (442)
T ss_pred cccceecCceecc----------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHHHhhhcccc
Confidence 445555543221 01579999999998863 4444558999999999999654443 2344555555
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
+|+|||||...+...+..++.++.|-++.- ..
T Consensus 176 ~LGLTATp~R~D~~~~~~l~~~~g~~vy~~------------------------------------------------~~ 207 (442)
T COG1061 176 RLGLTATPEREDGGRIGDLFDLIGPIVYEV------------------------------------------------SL 207 (442)
T ss_pred eeeeccCceeecCCchhHHHHhcCCeEeec------------------------------------------------CH
Confidence 999999997665444444444443322210 00
Q ss_pred Hhhhh-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1233 VEDVE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1233 KkDVe-kdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
+..+. +.|.+.....+++.++......|..........+.. . ...-....
T Consensus 208 ~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~---------~---------~~~~~~~~----------- 258 (442)
T COG1061 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA---------R---------GTLRAENE----------- 258 (442)
T ss_pred HHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh---------h---------hhhhHHHH-----------
Confidence 11111 457788889999999988888886443221100000 0 00000000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
..........|+..+..++.... .+.+++|||..+...+.|...|...|+ +..++|.++..+|..+++.|+
T Consensus 259 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 259 -------ARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred -------HHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 11122334567788888888766 789999999999999999999998888 889999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccc-cCCcceEEEEEEe
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQKREVKVIYME 1453 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhR-IGQKKeV~VyrLv 1453 (1953)
.++ ..+|++++++.+|+|++.|+++|+..+.-++..++|++||+.| ...++.+.++.+.
T Consensus 330 ~g~---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~ 389 (442)
T COG1061 330 TGG---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYS 389 (442)
T ss_pred cCC---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEE
Confidence 865 3479999999999999999999999999999999999999999 5556666665553
No 26
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.8e-27 Score=283.01 Aligned_cols=417 Identities=21% Similarity=0.229 Sum_probs=253.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--Psl 1076 (1953)
+-|.||...+...+. .|.+++.+||||||++|+.++++.+...+ |.+|+++|+. |+.|...-|.+.+ |..
T Consensus 15 e~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 15 EPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred cHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 679999998887774 48999999999999999999987665333 4899999976 8999999999887 568
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhH--HHHHhhhccc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESV--LARDLDRYRC-Q 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SK--lsraLk~L~a-~ 1151 (1953)
.++.+.|......+ ...+.+-+|+|.|++.+.+|. ..+...++.+||+|||||.-...+- ..+....+.+ .
T Consensus 88 ~i~~ltGev~p~~R----~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 88 EIAALTGEVRPEER----EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred heeeecCCCChHHH----HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 88888886433211 233556799999999999884 4566678999999999998653332 2232333333 4
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccC----ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFD----NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~----S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.|+||||| -++...+...++-|..+-.- ...+...+... ... ... ...+ -++-..+...|..+++|.
T Consensus 164 ~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~-~kv----e~i-kV~l-p~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 164 LILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKK-IKV----EWI-KVDL-PEEIKEIRDLLRDALKPR 235 (542)
T ss_pred eEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhcc-cee----EEE-eccC-cHHHHHHHHHHHHHHHHH
Confidence 689999999 56667777777666443211 00111111100 000 000 0000 111222344555555554
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhc-----------ChhhHHHHHHHHHH
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK-----------NPIYQAKVYKTLNN 1296 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~k-----------n~~~~ak~~~sL~n 1296 (1953)
+- .+++- -.....++. .++.+..................-.+.. ......-+...+.+
T Consensus 236 Lk-~L~~~--------g~~~~~~~~--~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~ 304 (542)
T COG1111 236 LK-PLKEL--------GVIESSSPV--SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQ 304 (542)
T ss_pred HH-HHHHc--------CceeccCcc--cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 32 11111 011111111 1222222110000000000000000000 00000001122222
Q ss_pred HHHHHHHhcCCCC-------CCCCCccccc-----hhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHH
Q 000169 1297 RCMELRKTCNHPL-------LNYPYFSDLS-----KDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEE 1362 (1953)
Q Consensus 1297 ilmqLRKiCNHP~-------L~~p~l~dls-----~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed 1362 (1953)
-+.+|..-|..-. +..+++.... ....--.-+|++.|.+||.+.. ..+.|||||++|+++++.|.+
T Consensus 305 Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~ 384 (542)
T COG1111 305 YLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVN 384 (542)
T ss_pred HHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHH
Confidence 2223332222200 0000000000 0001113479999999999886 566899999999999999999
Q ss_pred HHHHcCCeEE-eecC--------CCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHh
Q 000169 1363 YLQWRQLVYR-RIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1433 (1953)
Q Consensus 1363 ~L~~rGikyl-RLDG--------sTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~Q 1433 (1953)
+|...|+... ++-| +|++++..++|+.|+.+..+ +|++|.+|.+|||++.+|.||||||.-++-..+|
T Consensus 385 ~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQ 461 (542)
T COG1111 385 FLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQ 461 (542)
T ss_pred HHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHH
Confidence 9999998875 5555 69999999999999986655 7999999999999999999999999999999999
Q ss_pred hhhcccccCCcceEEEE
Q 000169 1434 AVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1434 AiGRAhRIGQKKeV~Vy 1450 (1953)
|+||++|- .+..|.|+
T Consensus 462 R~GRTGR~-r~Grv~vL 477 (542)
T COG1111 462 RKGRTGRK-RKGRVVVL 477 (542)
T ss_pred hhCccccC-CCCeEEEE
Confidence 99999996 34444443
No 27
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.96 E-value=6.4e-29 Score=316.18 Aligned_cols=274 Identities=27% Similarity=0.420 Sum_probs=201.8
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHH-----------H----HhCCCCCeEEEechHHHHHHHHHHHHHCCCC-eEE
Q 000169 1016 YNNKLNGILADEMGLGKTVQVMALIAYLM-----------E----FKGNYGPHLIIVPNAVLVNWKSELHKWLPSV-SCI 1079 (1953)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Ll-----------e----~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPsl-kVv 1079 (1953)
+..+..+++|||||+|||+..+++...-. . .....|.+|||||.+++.||..||.+++++. +|+
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEE
Confidence 34455679999999999999887764321 0 0113478999999999999999999999876 999
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----------------------hhcccccCccEEEcccccccCCc
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------------------RSKLSKVDWKYIIIDEAQRMKDR 1137 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----------------------~s~L~kikWd~VIIDEAHrLKN~ 1137 (1953)
.|.|-...- .........+|||||||+.++.+ .+.|..+.|..||||||+-+...
T Consensus 451 ~Y~Girk~~---~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess 527 (1394)
T KOG0298|consen 451 LYFGIRKTF---WLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS 527 (1394)
T ss_pred EEechhhhc---ccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch
Confidence 999965432 11224467899999999999765 23356678999999999999999
Q ss_pred hhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHH
Q 000169 1138 ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1217 (1953)
Q Consensus 1138 ~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI 1217 (1953)
.|..++++..+++.++|..||||+++ +.+|+.||+||.-..|+....|.+.+..++... ..-
T Consensus 528 sS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r-----------------a~~ 589 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR-----------------AKC 589 (1394)
T ss_pred HHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-----------------hhh
Confidence 99999999999999999999999999 999999999999999999999988776554332 122
Q ss_pred HHHHHHhhHHHHHHHHhhhhc--CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhh------hhcChhhHHH
Q 000169 1218 HRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR------VQKNPIYQAK 1289 (1953)
Q Consensus 1218 ~RLhklLrPFmLRRlKkDVek--dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~------l~kn~~~~ak 1289 (1953)
..+++++...+.|+.+.+|+. .+|+..+.+.+..+++.+..+|+..--.-........+... .........-
T Consensus 590 ~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~ 669 (1394)
T KOG0298|consen 590 EPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQ 669 (1394)
T ss_pred hhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChh
Confidence 357788888899999988876 47888888888888888877775331100000000000000 0011112223
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 000169 1290 VYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1290 ~~~sL~nilmqLRKiCNHP~L 1310 (1953)
....+.+.+.+||++|+||.+
T Consensus 670 ~~a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 670 LLAIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred hHHHHHHHHHHHHHhhccccc
Confidence 356778888999999999965
No 28
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=4.3e-26 Score=286.08 Aligned_cols=317 Identities=20% Similarity=0.246 Sum_probs=217.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-HHHHHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-YLMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa-~Lle~k----g~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
++.|+|..++..++. +.+.|++.+||+|||++++..+. .+.... +....+|||||+. |+.||..++.++.
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 689999999988775 78899999999999998865443 333211 1122479999987 7788999999987
Q ss_pred CC--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCchh--HHHHHhhh
Q 000169 1074 PS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLDR 1147 (1953)
Q Consensus 1074 Ps--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~S--KlsraLk~ 1147 (1953)
.. +++.+..|......... ......+|+|+|++.|..... .+.-.++++|||||||++..... .+.+.+..
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~---~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIY---ALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred cccCccEEEEeCCCCHHHHHH---HHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh
Confidence 53 55555555544332221 223467999999998875432 22234678999999999976432 33444455
Q ss_pred ccc-ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1148 YRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1148 L~a-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
+.. ...+++|||.- .++-.+.. +|.
T Consensus 305 ~~~~~q~l~~SAT~p----~~v~~l~~---------------~l~----------------------------------- 330 (545)
T PTZ00110 305 IRPDRQTLMWSATWP----KEVQSLAR---------------DLC----------------------------------- 330 (545)
T ss_pred CCCCCeEEEEEeCCC----HHHHHHHH---------------HHh-----------------------------------
Confidence 543 35788999941 11111111 000
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
...| ..+.+.... ...+..+ ++
T Consensus 331 -----------~~~~----v~i~vg~~~--l~~~~~i--------------------------------------~q--- 352 (545)
T PTZ00110 331 -----------KEEP----VHVNVGSLD--LTACHNI--------------------------------------KQ--- 352 (545)
T ss_pred -----------ccCC----EEEEECCCc--cccCCCe--------------------------------------eE---
Confidence 0000 000000000 0000000 00
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqea 1386 (1953)
.-..+....|...|..+|..+...+.++||||+....++.|...|...|+.+..+||+++.++|..+
T Consensus 353 -------------~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 353 -------------EVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWV 419 (545)
T ss_pred -------------EEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHH
Confidence 0000111235556666777665578899999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++.|+++... +|++|+++++|||++++++||+||+|+++..|+||+||++|.|.+..+..|.
T Consensus 420 l~~F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 420 LNEFKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred HHHHhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999976555 7999999999999999999999999999999999999999999887765543
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=8.8e-26 Score=277.41 Aligned_cols=312 Identities=18% Similarity=0.255 Sum_probs=220.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---Ps 1075 (1953)
++.|+|.+++..++. +.+.|++.+||+|||..++..+...+........+|||||+. |+.||..++.+++ ++
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 688999999998875 778999999999999887776666554333334689999976 7788999888764 56
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhccc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC- 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a- 1150 (1953)
+++..+.|+....... .......+|+|+|++.+.... ..+.-.++++|||||||++.+.. ..+...+..+..
T Consensus 102 ~~v~~~~Gg~~~~~~~---~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~ 178 (460)
T PRK11776 102 IKVLTLCGGVPMGPQI---DSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPAR 178 (460)
T ss_pred cEEEEEECCCChHHHH---HHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcc
Confidence 8888888776544332 122367899999999997653 22333468999999999986543 234444445543
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...+++|||+-. ++-.+...+ +..|.....
T Consensus 179 ~q~ll~SAT~~~----~~~~l~~~~--------------~~~~~~i~~-------------------------------- 208 (460)
T PRK11776 179 RQTLLFSATYPE----GIAAISQRF--------------QRDPVEVKV-------------------------------- 208 (460)
T ss_pred cEEEEEEecCcH----HHHHHHHHh--------------cCCCEEEEE--------------------------------
Confidence 357899999721 111111100 000000000
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
......+......+.+
T Consensus 209 ----~~~~~~~~i~~~~~~~------------------------------------------------------------ 224 (460)
T PRK11776 209 ----ESTHDLPAIEQRFYEV------------------------------------------------------------ 224 (460)
T ss_pred ----CcCCCCCCeeEEEEEe------------------------------------------------------------
Confidence 0000000000111100
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
....|+..|..+|.. ..+.++||||+....++.+.+.|...|+.+..+||+++..+|..+++.|
T Consensus 225 --------------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 225 --------------SPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred --------------CcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 011245555555543 2456899999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++... +|++|+++++|||++++++||+||.|.++..|+||+||++|.|....+.++.
T Consensus 289 ~~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~ 346 (460)
T PRK11776 289 ANRSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLV 346 (460)
T ss_pred HcCCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEE
Confidence 976555 7899999999999999999999999999999999999999999887665543
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.6e-25 Score=274.50 Aligned_cols=307 Identities=19% Similarity=0.200 Sum_probs=216.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.+||+|.+++.-++. +.+.|+..+||+|||+.++..+.. ..+.+|||+|+. |+.+|...+..+ ++.+
T Consensus 11 ~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~ 78 (470)
T TIGR00614 11 SFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKAS--GIPA 78 (470)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 799999999998876 678999999999999877554432 245789999976 778888888765 4555
Q ss_pred EEEecchhhH--hHHHHHHHhhccccEEEEeHHHHHhhh---hcc-cccCccEEEcccccccCCchh-------HHHHHh
Q 000169 1079 IYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYDR---SKL-SKVDWKYIIIDEAQRMKDRES-------VLARDL 1145 (1953)
Q Consensus 1079 vvy~Gs~deR--k~l~~qei~~~~fdVVITTYEsL~kd~---s~L-~kikWd~VIIDEAHrLKN~~S-------KlsraL 1145 (1953)
..+.+..... ..++ .....+.++|+++|++.+.... ..+ ...++.+|||||||.+..... .+....
T Consensus 79 ~~l~~~~~~~~~~~i~-~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 157 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVL-TDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLK 157 (470)
T ss_pred EEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHH
Confidence 5555543322 2222 2345667899999999986532 223 445789999999999864322 122222
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
..+.....++|||||......++...+++-.|.++.. .|.
T Consensus 158 ~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~---------------------------------- 197 (470)
T TIGR00614 158 QKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD---------------------------------- 197 (470)
T ss_pred HHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC----------------------------------
Confidence 3445567899999996655555555444333322110 000
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
-|.....+.. ..
T Consensus 198 --------------r~nl~~~v~~-~~----------------------------------------------------- 209 (470)
T TIGR00614 198 --------------RPNLYYEVRR-KT----------------------------------------------------- 209 (470)
T ss_pred --------------CCCcEEEEEe-CC-----------------------------------------------------
Confidence 0000000000 00
Q ss_pred CCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqe 1385 (1953)
...+..|..++.+ ...+.++||||.....++.|...|...|+.+..+||+++.++|..
T Consensus 210 ---------------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~ 267 (470)
T TIGR00614 210 ---------------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDD 267 (470)
T ss_pred ---------------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHH
Confidence 0011111112211 134667899999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+++.|..+... +|++|.++|+|||++++++||+||+|.++..|.|++||++|.|....+.+|+-
T Consensus 268 i~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 268 VHHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred HHHHHHcCCCc---EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEec
Confidence 99999976555 78999999999999999999999999999999999999999999988877654
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=7.6e-25 Score=267.03 Aligned_cols=313 Identities=17% Similarity=0.187 Sum_probs=215.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH----hCCCCCeEEEechH-HHHHHHHHHHHHCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF----KGNYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~----kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP 1074 (1953)
+++++|.+++..++. +.+.|+..+||+|||+.++..+...+.. ......+|||+|+. |+.||.+.+..|+.
T Consensus 23 ~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 688999999988875 6789999999999999987665544321 12234689999977 77888888877754
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhc
Q 000169 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1148 (1953)
Q Consensus 1075 --slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L 1148 (1953)
++.+..+.|+....... ......++|+|+|++.+.... ..+....+++|||||||++.... ..+...+..+
T Consensus 99 ~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~ 175 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHA---EVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAET 175 (434)
T ss_pred cCCcEEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhC
Confidence 46777777765443221 233457899999999887542 23334567899999999986533 2222222233
Q ss_pred c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1149 ~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~-kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
. ....+++|||+-...+.+ |..++. .|.......
T Consensus 176 ~~~~q~~~~SAT~~~~~~~~------------------~~~~~~~~~~~i~~~~-------------------------- 211 (434)
T PRK11192 176 RWRKQTLLFSATLEGDAVQD------------------FAERLLNDPVEVEAEP-------------------------- 211 (434)
T ss_pred ccccEEEEEEeecCHHHHHH------------------HHHHHccCCEEEEecC--------------------------
Confidence 2 245689999973221111 111110 000000000
Q ss_pred HHHHHHHhhhhcCCCCceEEE-EEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIV-LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~v-V~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
........... +.+.
T Consensus 212 ----------~~~~~~~i~~~~~~~~------------------------------------------------------ 227 (434)
T PRK11192 212 ----------SRRERKKIHQWYYRAD------------------------------------------------------ 227 (434)
T ss_pred ----------CcccccCceEEEEEeC------------------------------------------------------
Confidence 00000000000 0000
Q ss_pred CCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqe 1385 (1953)
....|+.+|..++.. ....++||||.....++.|...|...|+.+..++|+++..+|..
T Consensus 228 -------------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~ 286 (434)
T PRK11192 228 -------------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNE 286 (434)
T ss_pred -------------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHH
Confidence 001244555555542 24578999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++.|+.+... +|++|+++++|||++.+++||+||+|+++..|+||+||++|.|.+..+.++.
T Consensus 287 ~l~~f~~G~~~---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~ 349 (434)
T PRK11192 287 AIKRLTDGRVN---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLV 349 (434)
T ss_pred HHHHHhCCCCc---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEe
Confidence 99999976555 7999999999999999999999999999999999999999999887766553
No 32
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.4e-25 Score=270.86 Aligned_cols=312 Identities=17% Similarity=0.200 Sum_probs=212.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.+.|.|.+++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+. |+.||.+++..
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 678999999987775 788999999999999998766554332111 124589999987 77889888887
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHh
Q 000169 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDL 1145 (1953)
Q Consensus 1072 waP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraL 1145 (1953)
+.. ++.+.++.|+....... ......++|+|+|++.+.... ..+...++.+|||||||++.+.. ..+...+
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~ 182 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQL---KVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLF 182 (423)
T ss_pred HhccCCceEEEEECCCCHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHH
Confidence 763 46777777765433221 122356899999999987543 23444578999999999986533 2222333
Q ss_pred hhcc---cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1146 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1146 k~L~---a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
..+. ....+++|||.-. .+.++. ..++..|....-
T Consensus 183 ~~~~~~~~~~~~l~SAT~~~-~~~~~~-----------------~~~~~~p~~i~v------------------------ 220 (423)
T PRK04837 183 RRMPPANQRLNMLFSATLSY-RVRELA-----------------FEHMNNPEYVEV------------------------ 220 (423)
T ss_pred HhCCCccceeEEEEeccCCH-HHHHHH-----------------HHHCCCCEEEEE------------------------
Confidence 3333 2235788888521 111110 000000000000
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
... ..........+.
T Consensus 221 ----------~~~--~~~~~~i~~~~~----------------------------------------------------- 235 (423)
T PRK04837 221 ----------EPE--QKTGHRIKEELF----------------------------------------------------- 235 (423)
T ss_pred ----------cCC--CcCCCceeEEEE-----------------------------------------------------
Confidence 000 000000000000
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHH
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~ee 1382 (1953)
+ .....|+.+|..++.. ....++||||+....++.|..+|...|+.+..+||+++.++
T Consensus 236 ---------~-----------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 236 ---------Y-----------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKK 293 (423)
T ss_pred ---------e-----------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhH
Confidence 0 0012244555555543 24678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1383 RqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
|..+++.|+.++.. +|++|+++++|||++.+++||+||+|+++..|+|++||++|.|++..+..|
T Consensus 294 R~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 294 RLRILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred HHHHHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEE
Confidence 99999999986665 799999999999999999999999999999999999999999988766444
No 33
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=3.7e-25 Score=272.18 Aligned_cols=312 Identities=20% Similarity=0.238 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
.+.|+|.+++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+. |+.||.+++..+
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 688999999988775 778999999999999998776665543221 112589999986 788899999988
Q ss_pred CC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhh
Q 000169 1073 LP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1146 (1953)
Q Consensus 1073 aP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk 1146 (1953)
+. .+.++.+.|........ ......++|+|+|++.+.... ..+....+++|||||||++.... ..+...+.
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQM---MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLA 175 (456)
T ss_pred hccCCCEEEEEECCcCHHHHH---HHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHH
Confidence 64 45666666655433322 122457899999999986542 22333468899999999986533 22334444
Q ss_pred hcccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.+... ..+++|||+-. .+.++ ...+ +..|....-.
T Consensus 176 ~l~~~~q~l~~SAT~~~-~~~~l---~~~~--------------~~~~~~i~~~-------------------------- 211 (456)
T PRK10590 176 KLPAKRQNLLFSATFSD-DIKAL---AEKL--------------LHNPLEIEVA-------------------------- 211 (456)
T ss_pred hCCccCeEEEEeCCCcH-HHHHH---HHHH--------------cCCCeEEEEe--------------------------
Confidence 55433 47899999621 11111 1100 0011000000
Q ss_pred HHHHHHHHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1226 PFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE-~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
.. ...++... .+..+.
T Consensus 212 -------~~---~~~~~~i~~~~~~~~----------------------------------------------------- 228 (456)
T PRK10590 212 -------RR---NTASEQVTQHVHFVD----------------------------------------------------- 228 (456)
T ss_pred -------cc---cccccceeEEEEEcC-----------------------------------------------------
Confidence 00 00000000 000000
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
...|..+|..++.. ....++||||.....++.|.+.|...++.+..+||.++.++|.
T Consensus 229 ---------------------~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~ 285 (456)
T PRK10590 229 ---------------------KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGART 285 (456)
T ss_pred ---------------------HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Confidence 00122233333322 2346899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
.+++.|+++... +|++|+++++|||++++++||+||+|+++..|+|++||++|.|.+..+.++.
T Consensus 286 ~~l~~F~~g~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 286 RALADFKSGDIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred HHHHHHHcCCCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 999999976555 7899999999999999999999999999999999999999999887766554
No 34
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4e-25 Score=270.06 Aligned_cols=317 Identities=22% Similarity=0.284 Sum_probs=228.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~------kg~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
.+.|.|..+...++. +..+|....||+|||+..+..+...+.. ++....+||++|+. |..|-..++.++
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 577888888777776 8889999999999999987755444432 22333489999998 667778888888
Q ss_pred CCCCe--EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCC--chhHHHHHhh
Q 000169 1073 LPSVS--CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLD 1146 (1953)
Q Consensus 1073 aPslk--Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN--~~SKlsraLk 1146 (1953)
...+. +++++|+.....++ .......+|+|+|++.++... ..+.-.+..|+|+|||++|.. ....+.+.|.
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~---~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQL---RDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred cCCCCccEEEEeCCCCccHHH---HHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 86543 55555554444333 223567899999999998763 345555789999999999965 4556777777
Q ss_pred hc-ccce-eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1147 RY-RCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1147 ~L-~a~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
.+ ++.+ .|+.|+|= ..+
T Consensus 266 ~i~~~~rQtlm~saTw-----------------------p~~-------------------------------------- 284 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATW-----------------------PKE-------------------------------------- 284 (519)
T ss_pred hcCCCcccEEEEeeec-----------------------cHH--------------------------------------
Confidence 77 4444 56667761 000
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
+|.+..++.. .|-.+. +... . ....+..+.++-..
T Consensus 285 ----v~~lA~~fl~-~~~~i~-ig~~------------------------~---------------~~~a~~~i~qive~ 319 (519)
T KOG0331|consen 285 ----VRQLAEDFLN-NPIQIN-VGNK------------------------K---------------ELKANHNIRQIVEV 319 (519)
T ss_pred ----HHHHHHHHhc-CceEEE-ecch------------------------h---------------hhhhhcchhhhhhh
Confidence 1111111111 111111 1000 0 00001122333333
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH-hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk-atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeR 1383 (1953)
|+ ...|...|..+|.+.. ..+.||||||.+...++.|+..|+..++++..|||..++.+|
T Consensus 320 ~~-------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 320 CD-------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSER 380 (519)
T ss_pred cC-------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHH
Confidence 32 2467888888888876 455699999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1384 qeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
..+|+.|++++.. +|++|+++++|||++++|+||+||+|-|...|+||+||++|.|++.....|.
T Consensus 381 ~~~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 381 DWVLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred HHHHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEE
Confidence 9999999987776 8999999999999999999999999999999999999999999887765543
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=8.7e-25 Score=275.65 Aligned_cols=312 Identities=18% Similarity=0.218 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.+.|.|..++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+. |+.|+..++.+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999998885 788999999999999998776655432211 134789999987 77889999998
Q ss_pred HCCC--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCch--hHHHHH
Q 000169 1072 WLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDRE--SVLARD 1144 (1953)
Q Consensus 1072 waPs--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~~--SKlsra 1144 (1953)
|... +++..++|........ ......++|||+|++.|..... .+....+++|||||||++.... ..+...
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~---~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~i 183 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQR---ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183 (572)
T ss_pred HhccCCceEEEEECCCCHHHHH---HHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHH
Confidence 8754 5676777765443221 2234568999999999876532 2333467899999999986432 222233
Q ss_pred hhhcc---cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1145 LDRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1145 Lk~L~---a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
+..+. ....+++|||.-. . +..+.. .++..|.....
T Consensus 184 l~~lp~~~~~q~ll~SATl~~-~---v~~l~~--------------~~l~~p~~i~v----------------------- 222 (572)
T PRK04537 184 LRRMPERGTRQTLLFSATLSH-R---VLELAY--------------EHMNEPEKLVV----------------------- 222 (572)
T ss_pred HHhcccccCceEEEEeCCccH-H---HHHHHH--------------HHhcCCcEEEe-----------------------
Confidence 33343 3457889999521 1 111110 00110100000
Q ss_pred HHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1222 klLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
+.....+......+.+
T Consensus 223 -------------~~~~~~~~~i~q~~~~--------------------------------------------------- 238 (572)
T PRK04537 223 -------------ETETITAARVRQRIYF--------------------------------------------------- 238 (572)
T ss_pred -------------ccccccccceeEEEEe---------------------------------------------------
Confidence 0000000000000000
Q ss_pred HHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHH
Q 000169 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381 (1953)
Q Consensus 1302 RKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~e 1381 (1953)
.....|+.+|..+|.. ..+.++||||+....++.|.++|...++.+..+||.++..
T Consensus 239 ----------------------~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~ 294 (572)
T PRK04537 239 ----------------------PADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQK 294 (572)
T ss_pred ----------------------cCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 0001233444444432 3567999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1382 eRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+|..+++.|+++... +||+|+++++|||++.+++||+||.||++..|+|++||++|.|.+..+.++
T Consensus 295 eR~~il~~Fr~G~~~---VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~ 360 (572)
T PRK04537 295 KRESLLNRFQKGQLE---ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 360 (572)
T ss_pred HHHHHHHHHHcCCCe---EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEE
Confidence 999999999976555 799999999999999999999999999999999999999999988776554
No 36
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=2e-24 Score=274.47 Aligned_cols=314 Identities=15% Similarity=0.152 Sum_probs=218.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---Ps 1075 (1953)
++.|+|.+++..++. +.+.|+...||+|||++++..+...+........+|||||+. |+.||..++.+|. ++
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 689999999988875 678899999999999998666555444333445689999986 7789988887764 67
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhccc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC- 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a- 1150 (1953)
+.++.++|.......+. ......+|||+|++.+.... ..+.-.++.+|||||||.|.+.. ..+...+..+..
T Consensus 104 i~v~~~~gG~~~~~q~~---~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~ 180 (629)
T PRK11634 104 VNVVALYGGQRYDVQLR---ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 (629)
T ss_pred ceEEEEECCcCHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCC
Confidence 88887777654433221 22346899999999997653 22334467889999999986543 234445555543
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...+++|||.-. .+.++ .. .++..|....
T Consensus 181 ~q~llfSAT~p~-~i~~i---~~--------------~~l~~~~~i~--------------------------------- 209 (629)
T PRK11634 181 HQTALFSATMPE-AIRRI---TR--------------RFMKEPQEVR--------------------------------- 209 (629)
T ss_pred CeEEEEEccCCh-hHHHH---HH--------------HHcCCCeEEE---------------------------------
Confidence 346889999511 11110 00 0000000000
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
+... ....|......+
T Consensus 210 -i~~~-~~~~~~i~q~~~-------------------------------------------------------------- 225 (629)
T PRK11634 210 -IQSS-VTTRPDISQSYW-------------------------------------------------------------- 225 (629)
T ss_pred -ccCc-cccCCceEEEEE--------------------------------------------------------------
Confidence 0000 000000000000
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
.+...-|+..|.++|.. ....++||||.....++.|..+|...|+.+..+||.++..+|..++++|
T Consensus 226 ------------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~F 291 (629)
T PRK11634 226 ------------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 (629)
T ss_pred ------------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHH
Confidence 00111245555555543 2346899999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+.+..+ +||+|+++++|||++.+++||+||+|.++..|+|++||++|.|.+..+.++..
T Consensus 292 r~G~~~---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~ 350 (629)
T PRK11634 292 KDGRLD---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE 350 (629)
T ss_pred hCCCCC---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEec
Confidence 986655 79999999999999999999999999999999999999999998776665543
No 37
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.1e-24 Score=266.62 Aligned_cols=313 Identities=20% Similarity=0.252 Sum_probs=213.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.++++|.+++..++. +.+.|++..||+|||+.++..+...+.... ....+|||+|+. |+.||.+++..
T Consensus 109 ~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999987765 788999999999999988766554443221 134689999976 77888888888
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCchh--HHHHHh
Q 000169 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDL 1145 (1953)
Q Consensus 1072 waP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~S--KlsraL 1145 (1953)
+.. ++.+..+.|+.+..... .......++|+|+|++++..... .+.-.++++|||||+|++.+... .+.+.+
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~--~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQL--KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 262 (475)
T ss_pred hhccCCCEEEEEEccCChHHHH--HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHH
Confidence 764 46777777765433222 12334568999999999875422 22223678999999999975432 233344
Q ss_pred hhcc---cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1146 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1146 k~L~---a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
..+. ....+++|||... ++.++ .. .|...|....-.
T Consensus 263 ~~~~~~~~~q~i~~SAT~~~-~~~~~---~~--------------~~~~~~~~v~~~----------------------- 301 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFTD-DVMNL---AK--------------QWTTDPAIVEIE----------------------- 301 (475)
T ss_pred HhCCCCCCceEEEEEeecCH-HHHHH---HH--------------HhccCCEEEEec-----------------------
Confidence 4442 2458899999521 11111 11 011001000000
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
...+ ..+.....++
T Consensus 302 ----------~~~~---~~~~~~~~~~----------------------------------------------------- 315 (475)
T PRK01297 302 ----------PENV---ASDTVEQHVY----------------------------------------------------- 315 (475)
T ss_pred ----------cCcC---CCCcccEEEE-----------------------------------------------------
Confidence 0000 0000000000
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHH
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~ee 1382 (1953)
.+....|..+|..++.. ....++||||+....++.|.++|...|+.+..++|.++.++
T Consensus 316 --------------------~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 373 (475)
T PRK01297 316 --------------------AVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHK 373 (475)
T ss_pred --------------------EecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 00112234444444432 23469999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1383 RqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
|.++++.|++++.. +|++|+++++|||++++|+||+||+|++...|+|++||++|.|....+.+|
T Consensus 374 R~~~~~~Fr~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~ 438 (475)
T PRK01297 374 RIKTLEGFREGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISF 438 (475)
T ss_pred HHHHHHHHhCCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEE
Confidence 99999999976555 789999999999999999999999999999999999999999987765554
No 38
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=1.3e-24 Score=271.28 Aligned_cols=312 Identities=17% Similarity=0.197 Sum_probs=211.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHH------hCCCCCeEEEechH-HHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEF------KGNYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~------kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.++|+|..++..++. +.+.|++.+||+|||+.++..+.. ++.. ......+|||+|+. |+.|+..++..
T Consensus 143 ~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 143 FPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 799999999988875 788999999999999998776543 3221 11234689999987 77788888887
Q ss_pred HCCC--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHh
Q 000169 1072 WLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDL 1145 (1953)
Q Consensus 1072 waPs--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraL 1145 (1953)
+... +++..+.|+........ .....++|+|+|++.+.... ..+...+..+|||||||+|.... ..+...+
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~---~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~ 295 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLY---RIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIF 295 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHH
Confidence 7644 44555555433322221 12346899999999886542 22333467899999999996533 3344455
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
..+.....+++|||.-. . +-.+...+... +.... ..
T Consensus 296 ~~l~~~q~l~~SATl~~-~---v~~l~~~~~~~--------------~~~i~-~~------------------------- 331 (518)
T PLN00206 296 QALSQPQVLLFSATVSP-E---VEKFASSLAKD--------------IILIS-IG------------------------- 331 (518)
T ss_pred HhCCCCcEEEEEeeCCH-H---HHHHHHHhCCC--------------CEEEE-eC-------------------------
Confidence 55666778999999621 1 11111111000 00000 00
Q ss_pred HHHHHHHHhhhhcCCCCc--eEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000169 1226 PFMLRRRVEDVEGSLPPK--VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpK--vE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRK 1303 (1953)
. ...+.. ...+++|.
T Consensus 332 ---------~--~~~~~~~v~q~~~~~~---------------------------------------------------- 348 (518)
T PLN00206 332 ---------N--PNRPNKAVKQLAIWVE---------------------------------------------------- 348 (518)
T ss_pred ---------C--CCCCCcceeEEEEecc----------------------------------------------------
Confidence 0 000000 01111111
Q ss_pred hcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH-cCCeEEeecCCCCHHH
Q 000169 1304 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLED 1382 (1953)
Q Consensus 1304 iCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~-rGikylRLDGsTs~ee 1382 (1953)
...|...|..+|........++||||.....++.|...|.. .|+.+..+||+++.++
T Consensus 349 ----------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~e 406 (518)
T PLN00206 349 ----------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKE 406 (518)
T ss_pred ----------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHH
Confidence 01122233334443333346899999999999999999975 6999999999999999
Q ss_pred HHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1383 RqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
|..+++.|+.+... +|++|+++++|||++.+++||+||+|.++..|+|++||++|.|....+.+|
T Consensus 407 R~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 407 RREVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred HHHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 99999999986655 799999999999999999999999999999999999999999987666554
No 39
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=7.2e-24 Score=254.68 Aligned_cols=313 Identities=19% Similarity=0.240 Sum_probs=209.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.+.|+|..++..+.. +.+.|++.+||+|||+.++..+...+........+|||||.. |+.||...+..++. .+
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 778899999999999988766666554333445799999976 66777777777654 34
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhccc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC-Q 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a-~ 1151 (1953)
.+....|....+... .......+|+|+|++.+.... ..+...++++|||||+|++.... ..+...+..+.. .
T Consensus 126 ~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~ 202 (401)
T PTZ00424 126 RCHACVGGTVVRDDI---NKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDV 202 (401)
T ss_pred eEEEEECCcCHHHHH---HHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCc
Confidence 555555654433221 122345699999999876432 22334478999999999986432 344555555543 4
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..+++|||+-. ...++ .. .++..|......
T Consensus 203 ~~i~~SAT~~~-~~~~~---~~--------------~~~~~~~~~~~~-------------------------------- 232 (401)
T PTZ00424 203 QVALFSATMPN-EILEL---TT--------------KFMRDPKRILVK-------------------------------- 232 (401)
T ss_pred EEEEEEecCCH-HHHHH---HH--------------HHcCCCEEEEeC--------------------------------
Confidence 58999999622 11111 00 000000000000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
...+ .+.......+.+. .
T Consensus 233 -~~~~--~~~~~~~~~~~~~--~--------------------------------------------------------- 250 (401)
T PTZ00424 233 -KDEL--TLEGIRQFYVAVE--K--------------------------------------------------------- 250 (401)
T ss_pred -CCCc--ccCCceEEEEecC--h---------------------------------------------------------
Confidence 0000 0000000011100 0
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
...++..+..++.. ....++||||.....++.+...|...++.+..+||+++.++|..+++.|+
T Consensus 251 --------------~~~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~ 314 (401)
T PTZ00424 251 --------------EEWKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFR 314 (401)
T ss_pred --------------HHHHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 00011122222221 13468999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
++... +|++|+++++|||++.+++||+||++.++..|.|++||++|.|....|.++
T Consensus 315 ~g~~~---vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l 370 (401)
T PTZ00424 315 SGSTR---VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINF 370 (401)
T ss_pred cCCCC---EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEE
Confidence 76655 789999999999999999999999999999999999999999976655443
No 40
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.92 E-value=5.6e-23 Score=257.53 Aligned_cols=419 Identities=20% Similarity=0.227 Sum_probs=250.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
..||+||.+.+.-.+ +.|.|+|.+||+|||.+|+.++...++.... ++++++||+. |+.|....|..++-.-.
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 479999999998776 6789999999999999998888777765444 8999999987 78888888888774455
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccc---cCccEEEcccccccC-Cc-hhHHHHHhhhc--cc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRMK-DR-ESVLARDLDRY--RC 1150 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~k---ikWd~VIIDEAHrLK-N~-~SKlsraLk~L--~a 1150 (1953)
+....|+...+... .......+|+|.|++.+.++...-.. -.|.+||||||||.. |. .+...+.+... ..
T Consensus 135 ~T~~l~~~~~~~~r---~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNR---GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred ceeeccCccCCCch---hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 55555553332221 23345679999999999987433222 359999999999974 32 23334333333 33
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCCh--HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR--KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~--k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
.+.|+|||||= +++....+.+.-|... ++-. ......+.. .........+ +..+ -..+..+|..+++|++
T Consensus 212 ~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~----lr~~~~i~v~-~~~~-~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 212 NQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEE----LREHVQIPVD-LSLC-ERDIEDPFGMIIEPLL 283 (746)
T ss_pred ccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHH----HhccCcccCc-HHHh-hhhhhhhHHHHHHHHH
Confidence 37899999997 7777766665555443 2110 111111100 0000001111 1111 1224567777888877
Q ss_pred HHHHHhhhhc------------------CCCCceEEEEEeccCHHHHHHHHH-HHHccCcc-cCchhHHhhhhcChhhHH
Q 000169 1229 LRRRVEDVEG------------------SLPPKVSIVLRCRMSAIQSAIYDW-IKATGTLR-VDPEDEKRRVQKNPIYQA 1288 (1953)
Q Consensus 1229 LRRlKkDVek------------------dLPpKvE~vV~c~MSa~Qr~LYk~-I~~~~~l~-ld~~~ek~~l~kn~~~~a 1288 (1953)
.+-....+.. ..|........| +.......|.. +.....+. ++........ ......+
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f-~~e~~~~ 361 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLEDF-YEEVALK 361 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhhh-ccccchh
Confidence 6554333211 011111111111 11111111110 01111110 0000000000 0000000
Q ss_pred H----HH-HHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHh--cCCeeEEeechhHHHHHHH
Q 000169 1289 K----VY-KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR--TGHRVLLFSTMTKLLDILE 1361 (1953)
Q Consensus 1289 k----~~-~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLka--tGhKVLIFSQft~~LDILe 1361 (1953)
+ .. ..+...++.+..-+.|-.. + .....+|++.|.++|.+... ...|+|||+.++..++.|.
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~----------~-~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~ 430 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSL----------D-PPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALK 430 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhc----------C-CCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHH
Confidence 0 00 0001111111111111100 0 01246799999999988754 4569999999999999999
Q ss_pred HHHH-H--cCCeEEeecC--------CCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchh
Q 000169 1362 EYLQ-W--RQLVYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430 (1953)
Q Consensus 1362 d~L~-~--rGikylRLDG--------sTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~ 1430 (1953)
.+|. . .|++...+.| +|+..+..++|+.|++|+.+ +|++|.+|.+|||+..||.||.||..-||..
T Consensus 431 ~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIr 507 (746)
T KOG0354|consen 431 KWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIR 507 (746)
T ss_pred HHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHH
Confidence 9988 2 2455555554 67888999999999987776 7999999999999999999999999999999
Q ss_pred HHhhhhcccccCCcceEEEEE
Q 000169 1431 EEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1431 d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
.+||+|| +|.-..+-|.++.
T Consensus 508 mIQrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 508 MVQRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred HHHHhcc-ccccCCeEEEEEc
Confidence 9999999 8877666666554
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=1.3e-23 Score=266.89 Aligned_cols=304 Identities=18% Similarity=0.176 Sum_probs=213.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.+||+|.+++..++. +.++|+..+||+|||+.++..+. . ..+.+|||+|.. |+.+|...+... ++.+
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal--~----~~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPAL--V----LDGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHH--H----cCCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 699999999988775 78899999999999988754443 2 135799999975 777888888765 3555
Q ss_pred EEEecchhhH--hHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchh-------HHHHHhhh
Q 000169 1079 IYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDR 1147 (1953)
Q Consensus 1079 vvy~Gs~deR--k~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~S-------KlsraLk~ 1147 (1953)
..+.+..... ...+ .....+..+++++|++.+... ...+...++++|||||||.+..... .+......
T Consensus 93 ~~~~s~~~~~~~~~~~-~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 93 ACLNSTQTREQQLEVM-AGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEcCCCCHHHHHHHH-HHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 5555543222 1121 234456789999999988743 2345556789999999999864321 12222223
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.....++||||+-.....++...+.+..|.++.. .|.
T Consensus 172 ~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~------------------------------------ 209 (607)
T PRK11057 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFD------------------------------------ 209 (607)
T ss_pred CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCC------------------------------------
Confidence 44556899999986655555555444332221100 000
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.|.....++.
T Consensus 210 ------------r~nl~~~v~~---------------------------------------------------------- 219 (607)
T PRK11057 210 ------------RPNIRYTLVE---------------------------------------------------------- 219 (607)
T ss_pred ------------CCcceeeeee----------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
...++..|..++. ...+.++||||..+..++.+...|...|+.+..+||+++.++|..++
T Consensus 220 ------------------~~~~~~~l~~~l~--~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~ 279 (607)
T PRK11057 220 ------------------KFKPLDQLMRYVQ--EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQ 279 (607)
T ss_pred ------------------ccchHHHHHHHHH--hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 0000111111222 13567899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.|..+... +|++|.++|+|||++++++||+||+|++...|.|++||++|.|....+.+++
T Consensus 280 ~~F~~g~~~---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 280 EAFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred HHHHCCCCC---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 999976555 7899999999999999999999999999999999999999999887766554
No 42
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=245.22 Aligned_cols=314 Identities=22% Similarity=0.245 Sum_probs=226.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~KwaP--sl 1076 (1953)
.+.+.|.+++..++. +..+|.+.|||+|||+..+..|...+-..+..-.+||++|+.-+.+ ....|+.+.. ++
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 456789999988876 8889999999999999987766543333455456799999985554 5555777653 57
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCch--hHHHHHhhhcccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a~ 1151 (1953)
++.++.|+.+...... ....+++|+|+|++.++++.. .|.-....|+|+|||+++.|.. -.+...|..++..
T Consensus 159 r~~~lvGG~~m~~q~~---~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQAN---QLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE 235 (476)
T ss_pred EEEEEecCchHHHHHH---HhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc
Confidence 8888999887765443 235678999999999998754 3444467899999999998854 4677788888765
Q ss_pred e-eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1152 R-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1152 ~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
+ .+|.|||-..+ ...| . |
T Consensus 236 rqt~LfsATMt~k-v~kL-------------------------------------------------------~-----r 254 (476)
T KOG0330|consen 236 RQTFLFSATMTKK-VRKL-------------------------------------------------------Q-----R 254 (476)
T ss_pred ceEEEEEeecchh-hHHH-------------------------------------------------------H-----h
Confidence 5 57778884211 1111 0 0
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
..+ +-|.+ |.-+ ..|+.+ ..|.+ -|+
T Consensus 255 ---asl--~~p~~------v~~s----~ky~tv-----------------------------------~~lkQ----~yl 280 (476)
T KOG0330|consen 255 ---ASL--DNPVK------VAVS----SKYQTV-----------------------------------DHLKQ----TYL 280 (476)
T ss_pred ---hcc--CCCeE------Eecc----chhcch-----------------------------------HHhhh----heE
Confidence 000 01111 1100 011111 00110 011
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
+.+ ..-|-..|..||.++ .|..+||||......+.+.-+|+..|+....|+|.|+...|..+++.|
T Consensus 281 fv~------------~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~F 346 (476)
T KOG0330|consen 281 FVP------------GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKF 346 (476)
T ss_pred ecc------------ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHH
Confidence 111 112445677777764 568999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
+++..+ +|++|++|++|||++.+|+||+||.|-+-..|+||.||+.|.|.... ++.|++
T Consensus 347 k~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~--~ItlVt 405 (476)
T KOG0330|consen 347 KAGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGK--AITLVT 405 (476)
T ss_pred hccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcc--eEEEEe
Confidence 986655 89999999999999999999999999999999999999999995443 444444
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=3.7e-23 Score=261.90 Aligned_cols=304 Identities=20% Similarity=0.213 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
++||+|.+++.-++. +.+.|++.+||.|||+.+...+. + ..+.+|||+|.. |+.++...+... ++.+
T Consensus 13 ~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~~ 80 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVAA 80 (591)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCcE
Confidence 699999999988875 67899999999999998764432 2 246789999965 778898888875 4666
Q ss_pred EEEecchhhH--hHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchh-------HHHHHhhh
Q 000169 1079 IYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDR 1147 (1953)
Q Consensus 1079 vvy~Gs~deR--k~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~S-------KlsraLk~ 1147 (1953)
..+++..... ..+. .....+..+|+++|++.+... ...+...++++|||||||.+..... .+......
T Consensus 81 ~~~~s~~~~~~~~~~~-~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~ 159 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIE-KALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER 159 (591)
T ss_pred EEEeCCCCHHHHHHHH-HHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh
Confidence 6666654322 2221 234457789999999998643 3445667899999999999854221 23333334
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.....++||||+......+++..+.+-.+..|.. .|.
T Consensus 160 ~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~~------------------------------------ 197 (591)
T TIGR01389 160 FPQVPRIALTATADAETRQDIRELLRLADANEFIT------SFD------------------------------------ 197 (591)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CCC------------------------------------
Confidence 54555899999986655555554443322211100 000
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.|.....++.
T Consensus 198 ------------r~nl~~~v~~---------------------------------------------------------- 207 (591)
T TIGR01389 198 ------------RPNLRFSVVK---------------------------------------------------------- 207 (591)
T ss_pred ------------CCCcEEEEEe----------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
...+...|..+|.. ..+.++||||.....++.|.++|...|+.+..+||+++.++|..++
T Consensus 208 ------------------~~~~~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 208 ------------------KNNKQKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred ------------------CCCHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 00111222222322 1367899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.|..+... +|++|.++|.|||++++++||+||+|+|...|.|++||++|.|....+.+++
T Consensus 268 ~~F~~g~~~---vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~ 328 (591)
T TIGR01389 268 EDFLYDDVK---VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLY 328 (591)
T ss_pred HHHHcCCCc---EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEec
Confidence 999976544 7999999999999999999999999999999999999999999887775543
No 44
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.2e-23 Score=257.62 Aligned_cols=315 Identities=22% Similarity=0.296 Sum_probs=221.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--hCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--KGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~--kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
...|.|..++..++. +...|....||+|||+..+..+...+.. .....++||++|+. |..|-.+++.++..
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 678999999988876 7888999999999999988877666542 22222389999998 66677777777754
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchh--HHHHHhhhcc
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR 1149 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~S--KlsraLk~L~ 1149 (1953)
.+.++.+.|+.....+.. .... ..+|||.|+..++... ..|...+..++|+|||.+|.+... .+...+..++
T Consensus 127 ~~~~~~~i~GG~~~~~q~~--~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p 203 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIE--ALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP 203 (513)
T ss_pred CCccEEEEECCCCHHHHHH--HHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC
Confidence 577777777766555442 2333 4999999999998653 345666789999999999987532 3444555554
Q ss_pred c-ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1150 C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1150 a-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
. ...++.|||--. . ++.+..-++ ..| ..
T Consensus 204 ~~~qtllfSAT~~~-~---i~~l~~~~l--------------~~p---------------------------------~~ 232 (513)
T COG0513 204 PDRQTLLFSATMPD-D---IRELARRYL--------------NDP---------------------------------VE 232 (513)
T ss_pred cccEEEEEecCCCH-H---HHHHHHHHc--------------cCC---------------------------------cE
Confidence 4 457888998522 1 111111000 000 00
Q ss_pred HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
+..-........+.....++.|.
T Consensus 233 i~v~~~~~~~~~~~i~q~~~~v~--------------------------------------------------------- 255 (513)
T COG0513 233 IEVSVEKLERTLKKIKQFYLEVE--------------------------------------------------------- 255 (513)
T ss_pred EEEccccccccccCceEEEEEeC---------------------------------------------------------
Confidence 00000000000000111111110
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIe 1388 (1953)
....|+.+|..+|... ...++||||.....++.|...|..+|+++..|||++++++|.+.++
T Consensus 256 ----------------~~~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~ 317 (513)
T COG0513 256 ----------------SEEEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALE 317 (513)
T ss_pred ----------------CHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH
Confidence 0013677777777653 2337999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
.|+++... +|++|+++++|||++.+++||+||+|.++..|+||+||++|.|.+.....+
T Consensus 318 ~F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~f 376 (513)
T COG0513 318 KFKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISF 376 (513)
T ss_pred HHHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEE
Confidence 99976666 799999999999999999999999999999999999999999977755444
No 45
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=1.1e-22 Score=270.19 Aligned_cols=361 Identities=17% Similarity=0.208 Sum_probs=214.0
Q ss_pred CCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPsl 1076 (1953)
..||+||.++|..+...+. ...++||++.||+|||+++++++..++. .+..+++|||||.. |+.||..+|..+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh-cCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 4799999999988776554 4467899999999999999999888775 34557899999965 8999999999874321
Q ss_pred e-EE--EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh-------cccccCccEEEcccccccCCc---------
Q 000169 1077 S-CI--YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKDR--------- 1137 (1953)
Q Consensus 1077 k-Vv--vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s-------~L~kikWd~VIIDEAHrLKN~--------- 1137 (1953)
. .+ +|. ..... .........|+|+|+.++.+... .+....|++||||||||....
T Consensus 491 ~~~~~~i~~-i~~L~-----~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 491 DQTFASIYD-IKGLE-----DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccchhhhhc-hhhhh-----hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 1 11 121 11101 01123457899999999876421 123357899999999996310
Q ss_pred --------hhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1138 --------ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1138 --------~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
.++..+.|..|. ..+|+|||||..++ ...|+.|+....
T Consensus 565 ~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----------------------~~~FG~pv~~Ys----------- 610 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----------------------TEIFGEPVYTYS----------- 610 (1123)
T ss_pred ccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----------------------hHHhCCeeEEee-----------
Confidence 133344444444 58899999997432 112223322210
Q ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHhhhhcCCCCceEEEEE----eccC-HHHHHHHHHHHHccC-cccCchhHHhhhhc
Q 000169 1210 TEKKVIIIHRLHQIL-EPFMLRRRVEDVEGSLPPKVSIVLR----CRMS-AIQSAIYDWIKATGT-LRVDPEDEKRRVQK 1282 (1953)
Q Consensus 1210 eEek~liI~RLhklL-rPFmLRRlKkDVekdLPpKvE~vV~----c~MS-a~Qr~LYk~I~~~~~-l~ld~~~ek~~l~k 1282 (1953)
+...+ ..+++ ...|+....... +... ..+...|+....... ..+. .+.
T Consensus 611 ----------l~eAI~DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~--d~~----- 665 (1123)
T PRK11448 611 ----------YREAVIDGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLE--DEV----- 665 (1123)
T ss_pred ----------HHHHHhcCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCc--HHH-----
Confidence 00000 01110 001222211100 0000 011111211100000 0000 000
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHh-cCCeeEEeechhHHHHHHH
Q 000169 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILE 1361 (1953)
Q Consensus 1283 n~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQft~~LDILe 1361 (1953)
.+. ...+. +.+.+ ..--+ .++..++..+.. .+.|+||||....+++.|.
T Consensus 666 --~~~---~~~~~------~~vi~------------------~~~~~-~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 666 --DFE---VEDFN------RRVIT------------------ESFNR-VVCEELAKYLDPTGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred --hhh---HHHHH------HHHhh------------------HHHHH-HHHHHHHHHHhccCCCcEEEEEcCHHHHHHHH
Confidence 000 00000 00000 00000 011222222211 2369999999999999888
Q ss_pred HHHHHc------CC---eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHH
Q 000169 1362 EYLQWR------QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1432 (1953)
Q Consensus 1362 d~L~~r------Gi---kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~ 1432 (1953)
+.|... ++ .+..++|+++ ++..++++|.++ .+..+|++++.+++|+|++.+++||+++++-++..|.
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~--~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~ 791 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE--RLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYE 791 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC--CCCeEEEEecccccCCCcccccEEEEecCCCCHHHHH
Confidence 877643 22 3567999985 578899999863 3447899999999999999999999999999999999
Q ss_pred hhhhcccccCC---cceEEEEEEehhhhhh
Q 000169 1433 QAVARAHRIGQ---KREVKVIYMEAVVDKI 1459 (1953)
Q Consensus 1433 QAiGRAhRIGQ---KKeV~VyrLvTVEEkI 1459 (1953)
|++||+.|+.- |..+.||.++.+-+.+
T Consensus 792 QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l 821 (1123)
T PRK11448 792 QMLGRATRLCPEIGKTHFRIFDAVDIYEAL 821 (1123)
T ss_pred HHHhhhccCCccCCCceEEEEehHHHHHhc
Confidence 99999999865 6668999988765443
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.91 E-value=1.5e-22 Score=262.67 Aligned_cols=308 Identities=17% Similarity=0.138 Sum_probs=211.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
..+||+|.++|..++. +.+.|+..+||.|||+.+...+.. ..+.+|||+|+. |+.++...+.. .++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~--~GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQ--ANIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHh--CCCe
Confidence 3799999999998876 788999999999999988665532 136799999976 66556666654 2566
Q ss_pred EEEEecchhhH--hHHHHHHHh--hccccEEEEeHHHHHhh---hhcc---c-ccCccEEEcccccccCCchhH---HHH
Q 000169 1078 CIYYVGAKDQR--SRLFSQEVA--ALKFNVLVTTYEFIMYD---RSKL---S-KVDWKYIIIDEAQRMKDRESV---LAR 1143 (1953)
Q Consensus 1078 Vvvy~Gs~deR--k~l~~qei~--~~~fdVVITTYEsL~kd---~s~L---~-kikWd~VIIDEAHrLKN~~SK---lsr 1143 (1953)
+..+.+..... ..++. ... .+.++||++|++.+... ...+ . ...+.+|||||||.+-..... -++
T Consensus 527 Aa~L~s~~s~~eq~~ilr-~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr 605 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQ-ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQ 605 (1195)
T ss_pred EEEEECCCCHHHHHHHHH-HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHH
Confidence 66666554322 22221 122 26789999999998642 1122 1 234789999999998643211 112
Q ss_pred ----HhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000169 1144 ----DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (1953)
Q Consensus 1144 ----aLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~R 1219 (1953)
....+....+++||||.......++...|.+..+.+|. ..|..
T Consensus 606 ~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf~R--------------------------- 652 (1195)
T PLN03137 606 GLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSFNR--------------------------- 652 (1195)
T ss_pred HHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------cccCc---------------------------
Confidence 22345556689999998666655655544433222211 00100
Q ss_pred HHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000169 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (1953)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilm 1299 (1953)
|.....++. . . .
T Consensus 653 ---------------------pNL~y~Vv~-k-~---k------------------------------------------ 664 (1195)
T PLN03137 653 ---------------------PNLWYSVVP-K-T---K------------------------------------------ 664 (1195)
T ss_pred ---------------------cceEEEEec-c-c---h------------------------------------------
Confidence 100000000 0 0 0
Q ss_pred HHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCC
Q 000169 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (1953)
Q Consensus 1300 qLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs 1379 (1953)
..+..|..++.. ...+...||||..+..++.|..+|...|+.+..+||+++
T Consensus 665 ----------------------------k~le~L~~~I~~-~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs 715 (1195)
T PLN03137 665 ----------------------------KCLEDIDKFIKE-NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMD 715 (1195)
T ss_pred ----------------------------hHHHHHHHHHHh-cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCC
Confidence 000111111111 012457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1380 ~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
.++|..++++|..++.. +|++|.++|+|||++++++||+||+|.+...|.|++|||+|.|....|.+|+-
T Consensus 716 ~eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys 785 (1195)
T PLN03137 716 PAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 785 (1195)
T ss_pred HHHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEec
Confidence 99999999999976555 78999999999999999999999999999999999999999999988877663
No 47
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.90 E-value=8.5e-22 Score=251.32 Aligned_cols=308 Identities=17% Similarity=0.234 Sum_probs=206.2
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP- 1074 (1953)
.+|.++|.+++..++.-... .-+.||..+||+|||++++..+...+. ....+||++|+. |..||.++|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 37999999999998875432 236799999999999988766665554 235799999987 67889999999987
Q ss_pred -CCeEEEEecchhhHh-HHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcc---
Q 000169 1075 -SVSCIYYVGAKDQRS-RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR--- 1149 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk-~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~--- 1149 (1953)
++++.+++|+..... ......+..+..+|||+|+..+.... .-.+..+|||||+|++.-. .+...+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~~~ 385 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVE--QRKKLREKGQGGF 385 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhccHH--HHHHHHHhcccCC
Confidence 578888888654322 11222345677899999999876432 2246789999999997421 2222222222
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
..+.|++||||+...+. +.. ++. +.
T Consensus 386 ~~~~l~~SATp~prtl~----l~~------~~~-------l~-------------------------------------- 410 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLA----LTV------YGD-------LD-------------------------------------- 410 (630)
T ss_pred CCCEEEEeCCCCcHHHH----HHh------cCC-------cc--------------------------------------
Confidence 56789999999764321 100 000 00
Q ss_pred HHHHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1230 RRRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1230 RRlKkDVekdLPpKv--E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
..+...+|... .....+.-..
T Consensus 411 ----~~~i~~~p~~r~~i~~~~~~~~~----------------------------------------------------- 433 (630)
T TIGR00643 411 ----TSIIDELPPGRKPITTVLIKHDE----------------------------------------------------- 433 (630)
T ss_pred ----eeeeccCCCCCCceEEEEeCcch-----------------------------------------------------
Confidence 00001122110 0000000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechh--------HHHHHHHHHHHH--cCCeEEeecCC
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW--RQLVYRRIDGT 1377 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft--------~~LDILed~L~~--rGikylRLDGs 1377 (1953)
+ ..+...+.+....+++++|||... ..+..+.+.|.. .++.+..+||.
T Consensus 434 ---------------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~ 491 (630)
T TIGR00643 434 ---------------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGR 491 (630)
T ss_pred ---------------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 0 011111222234577888888654 233344455543 47889999999
Q ss_pred CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcceEEEEE
Q 000169 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1378 Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++.++|..++++|..+..+ +|++|.+.++|||++++++||++|.+. +...+.|+.||++|-|.+..|.+++
T Consensus 492 m~~~eR~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 492 MKSDEKEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CCHHHHHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999986655 799999999999999999999999985 7788999999999999888776665
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.89 E-value=1.6e-21 Score=250.52 Aligned_cols=306 Identities=17% Similarity=0.204 Sum_probs=205.8
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.+|.++|..++..+..-... ..+.||..+||+|||+.++..+...+. ....+||++|+. |..|+...|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 37999999999988874432 236799999999999998776655443 234799999987 778899999999865
Q ss_pred --CeEEEEecchhh--HhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-cc
Q 000169 1076 --VSCIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RC 1150 (1953)
Q Consensus 1076 --lkVvvy~Gs~de--Rk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a 1150 (1953)
+++.+++|.... +...+ .....+..+|+|+|+..+.... .-.+..+|||||+|++.- .....+... ..
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg~---~qr~~l~~~~~~ 409 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREIL-EAIASGEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFGV---EQRLALREKGEN 409 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHH-HHHhCCCCCEEEchHHHhcccc---hhcccceEEEechhhhhH---HHHHHHHhcCCC
Confidence 788888887543 33222 2345567999999998875421 223678999999999832 222233322 34
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
.+.|++||||+...+. +..+ +. ..
T Consensus 410 ~~iL~~SATp~prtl~----~~~~------g~-----------------~~----------------------------- 433 (681)
T PRK10917 410 PHVLVMTATPIPRTLA----MTAY------GD-----------------LD----------------------------- 433 (681)
T ss_pred CCEEEEeCCCCHHHHH----HHHc------CC-----------------Cc-----------------------------
Confidence 6789999999643211 1000 00 00
Q ss_pred HHHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1231 RRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1231 RlKkDVekdLPpKv--E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
-.+...+|... .....+.
T Consensus 434 ---~s~i~~~p~~r~~i~~~~~~--------------------------------------------------------- 453 (681)
T PRK10917 434 ---VSVIDELPPGRKPITTVVIP--------------------------------------------------------- 453 (681)
T ss_pred ---eEEEecCCCCCCCcEEEEeC---------------------------------------------------------
Confidence 00001122110 0000000
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhH--------HHHHHHHHHHHc--CCeEEeecCCC
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQWR--QLVYRRIDGTT 1378 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~--------~LDILed~L~~r--GikylRLDGsT 1378 (1953)
..+...+...+.+....+++++|||.... .+..+.+.|... ++++..+||.+
T Consensus 454 ------------------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m 515 (681)
T PRK10917 454 ------------------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRM 515 (681)
T ss_pred ------------------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 00001111122222357888999987432 234455566544 57899999999
Q ss_pred CHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcceEEEEE
Q 000169 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.++|..++++|.++..+ +|+||.+.++|||++++++||++|++. ....+.|+.||++|-|.+..|.++.
T Consensus 516 ~~~eR~~i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 516 KPAEKDAVMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred CHHHHHHHHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEE
Confidence 999999999999986655 799999999999999999999999985 5788999999999999887776654
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=2.8e-21 Score=253.13 Aligned_cols=304 Identities=17% Similarity=0.227 Sum_probs=209.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.++.|+|..++..+..-...+ .+.|++.+||+|||.+++..+...+. . ...+||+||+. |+.|+...|.+++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~--g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-D--GKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-h--CCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 468999999999988754332 46799999999999988766554443 2 25799999987 678899999998865
Q ss_pred --CeEEEEecchh--hHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcc-c
Q 000169 1076 --VSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (1953)
Q Consensus 1076 --lkVvvy~Gs~d--eRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~-a 1150 (1953)
+++.++.|... ++.... ..+..+..+|||+|+..+.++ +.-.+..+|||||+|++.. .....+..+. .
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~-~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfgv---~~~~~L~~~~~~ 599 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEIL-KELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFGV---KQKEKLKELRTS 599 (926)
T ss_pred CCcEEEEEeccccHHHHHHHH-HHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccch---hHHHHHHhcCCC
Confidence 45556665432 333332 234456789999999765432 2223678999999999742 3344455553 3
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...|+|||||+...+.. ++..+..+.++.
T Consensus 600 ~~vL~~SATpiprtl~~--~l~g~~d~s~I~------------------------------------------------- 628 (926)
T TIGR00580 600 VDVLTLSATPIPRTLHM--SMSGIRDLSIIA------------------------------------------------- 628 (926)
T ss_pred CCEEEEecCCCHHHHHH--HHhcCCCcEEEe-------------------------------------------------
Confidence 46899999997543221 111100000000
Q ss_pred HHHhhhhcCCCCceE---EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1231 RRVEDVEGSLPPKVS---IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE---~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.|+... ....+..+.
T Consensus 629 ---------~~p~~R~~V~t~v~~~~~----------------------------------------------------- 646 (926)
T TIGR00580 629 ---------TPPEDRLPVRTFVMEYDP----------------------------------------------------- 646 (926)
T ss_pred ---------cCCCCccceEEEEEecCH-----------------------------------------------------
Confidence 000000 000000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqe 1385 (1953)
..+...++..+ ..+.+|+|||+....++.+.+.|... ++++..+||.|+.++|.+
T Consensus 647 ----------------------~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~ 703 (926)
T TIGR00580 647 ----------------------ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEE 703 (926)
T ss_pred ----------------------HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Confidence 00011112222 35789999999999999999999874 789999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++++|..++.+ +|+||.+.++|||++.+++||++|.+ +....+.|+.||++|-|.+..|.++.
T Consensus 704 im~~F~~Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 704 VMLEFYKGEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred HHHHHHcCCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 99999987666 89999999999999999999999996 46678999999999999877776554
No 50
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.88 E-value=7e-21 Score=246.34 Aligned_cols=318 Identities=17% Similarity=0.138 Sum_probs=208.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-Pslk 1077 (1953)
+|+++|.+++..+.. +.+.|++..||+|||+.++..+...+.. .....+|||+|+. |..+-..+|.++. .+++
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 699999999988775 8899999999999999987776655532 2335789999987 6667777888875 3578
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--------hcccccCccEEEcccccccCC-chhHHHHHhhhc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY 1148 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--------s~L~kikWd~VIIDEAHrLKN-~~SKlsraLk~L 1148 (1953)
+.+|.|......+ .......+|+|||++++.... ..| .+.++|||||+|.+.+ ..+.+...+.++
T Consensus 111 v~~~~Gdt~~~~r----~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 111 PATYDGDTPTEER----RWAREHARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred EEEEeCCCCHHHH----HHHhcCCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 8888887543322 122345799999999886321 112 2568999999999965 223333333322
Q ss_pred -------c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1149 -------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1149 -------~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
. ....+++|||-- +..++.. .+ +..|+....
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~--n~~~~~~---~l--------------~g~~~~~i~---------------------- 223 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTA--DPAAAAS---RL--------------IGAPVVAVT---------------------- 223 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCC--CHHHHHH---HH--------------cCCCeEEEC----------------------
Confidence 1 235789999952 2233211 11 111111000
Q ss_pred HHHhhHHHHHHHHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilm 1299 (1953)
....|... ...++.+ .. +. + ... . ...
T Consensus 224 ----------------~~~~~~~~~~~~~~~p-~~-----~~-~--------~~~---~---~~~--------------- 251 (742)
T TIGR03817 224 ----------------EDGSPRGARTVALWEP-PL-----TE-L--------TGE---N---GAP--------------- 251 (742)
T ss_pred ----------------CCCCCcCceEEEEecC-Cc-----cc-c--------ccc---c---ccc---------------
Confidence 00011111 1111110 00 00 0 000 0 000
Q ss_pred HHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--------CCeE
Q 000169 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--------QLVY 1371 (1953)
Q Consensus 1300 qLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--------Giky 1371 (1953)
.| . .....+..+|.. +...+.++||||+.+..++.|..+|... +.++
T Consensus 252 -~r-----------------~---~~~~~~~~~l~~----l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v 306 (742)
T TIGR03817 252 -VR-----------------R---SASAEAADLLAD----LVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERV 306 (742)
T ss_pred -cc-----------------c---chHHHHHHHHHH----HHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccch
Confidence 00 0 000113333333 3345789999999999999999988754 5677
Q ss_pred EeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1372 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1372 lRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
..++|+++.++|.++.++|.++... +|++|+++++|||+..+|+||+||.|-+...|+||+||++|.|....+.+
T Consensus 307 ~~~hgg~~~~eR~~ie~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 307 AAYRAGYLPEDRRELERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred hheecCCCHHHHHHHHHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEE
Confidence 8899999999999999999975554 79999999999999999999999999999999999999999998765543
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.88 E-value=6.7e-21 Score=250.47 Aligned_cols=325 Identities=17% Similarity=0.155 Sum_probs=202.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHH-----
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKS----- 1067 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~S-LL~QW~~----- 1067 (1953)
.|+|+|..++..+.. +.++|++.+||+|||+.++..+...+.... ....+|+|+|+. |..++..
T Consensus 32 ~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 32 TFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 699999999987654 789999999999999998765554332211 123589999986 5555554
Q ss_pred --HHHHHC-------CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hccc--ccCccEEEccccccc
Q 000169 1068 --ELHKWL-------PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLS--KVDWKYIIIDEAQRM 1134 (1953)
Q Consensus 1068 --Ef~Kwa-------PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~--kikWd~VIIDEAHrL 1134 (1953)
++.+++ +.+.+.+++|......+. ......++|+|||++++.... ..+. -.+.++|||||+|.+
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~---~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l 184 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ---KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSL 184 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH---HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhh
Confidence 333443 467888888865443221 123346799999999885321 1110 125689999999999
Q ss_pred CCch--hHHHHHhh---hc--ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000169 1135 KDRE--SVLARDLD---RY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (1953)
Q Consensus 1135 KN~~--SKlsraLk---~L--~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~ 1207 (1953)
.+.. ..+...+. .+ ....+|+||||. .++.++.. ||...... +...
T Consensus 185 ~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~----------------~~~r------ 237 (876)
T PRK13767 185 AENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD----------------GEPR------ 237 (876)
T ss_pred ccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc----------------CCCC------
Confidence 7532 22222222 22 234689999996 22333322 22110000 0000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000169 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ 1287 (1953)
++.+ +...........+.++.... +.
T Consensus 238 ------------------~~~i------v~~~~~k~~~i~v~~p~~~l----~~-------------------------- 263 (876)
T PRK13767 238 ------------------DCEI------VDARFVKPFDIKVISPVDDL----IH-------------------------- 263 (876)
T ss_pred ------------------ceEE------EccCCCccceEEEeccCccc----cc--------------------------
Confidence 0000 00000000011111110000 00
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc
Q 000169 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (1953)
Q Consensus 1288 ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r 1367 (1953)
. .. ......+...|.++...++++||||+.+..++.+...|...
T Consensus 264 -------------------------~-----~~------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 264 -------------------------T-----PA------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -------------------------c-----cc------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 0 00 00001122233344456789999999999999999988763
Q ss_pred ------CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc
Q 000169 1368 ------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1368 ------GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI 1441 (1953)
+..+..+||+++.++|..+.+.|+++... +|++|.++++|||++.+|+||+||+|.+...|+||+||++|.
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 46788899999999999999999976544 799999999999999999999999999999999999999986
Q ss_pred -CCcceEEEEE
Q 000169 1442 -GQKREVKVIY 1451 (1953)
Q Consensus 1442 -GQKKeV~Vyr 1451 (1953)
|....-.++.
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4444444443
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.88 E-value=5e-21 Score=255.33 Aligned_cols=304 Identities=18% Similarity=0.214 Sum_probs=208.4
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.++.+.|..++.-++.-... ..+.|++.+||+|||.+++..+..... ....+|||||+. |+.|+...|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 36899999999888764332 356799999999999987644433332 345799999987 667788888887654
Q ss_pred --CeEEEEecch--hhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcc-c
Q 000169 1076 --VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (1953)
Q Consensus 1076 --lkVvvy~Gs~--deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~-a 1150 (1953)
+++.++.|.. ..+...+. ....+..+|||+|++.+..+ +.-.++++|||||+|++.. .....+..+. .
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~-~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~lk~l~~~ 748 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILA-EAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERIKAMRAD 748 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHH-HHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHHHhcCCC
Confidence 4555565533 33333222 23346789999999876532 2224688999999999842 2334455543 4
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...|++||||+...+.-. +..+.++.++
T Consensus 749 ~qvLl~SATpiprtl~l~--~~gl~d~~~I-------------------------------------------------- 776 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMA--MSGMRDLSII-------------------------------------------------- 776 (1147)
T ss_pred CcEEEEcCCCCHHHHHHH--HhhCCCcEEE--------------------------------------------------
Confidence 468999999976543211 0011011000
Q ss_pred HHHhhhhcCCCCceE---EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1231 RRVEDVEGSLPPKVS---IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE---~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
..|+... ..+....
T Consensus 777 --------~~~p~~r~~v~~~~~~~------------------------------------------------------- 793 (1147)
T PRK10689 777 --------ATPPARRLAVKTFVREY------------------------------------------------------- 793 (1147)
T ss_pred --------ecCCCCCCCceEEEEec-------------------------------------------------------
Confidence 0000000 0000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqe 1385 (1953)
........++.++. .+.+|+|||+.+..++.+.+.|... ++.+..+||.|+.++|.+
T Consensus 794 --------------------~~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~ 852 (1147)
T PRK10689 794 --------------------DSLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 (1147)
T ss_pred --------------------CcHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHH
Confidence 00001122333333 4678999999999999999999887 789999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++.+|.+++.+ +|++|+++++|||++.+++||+.+++ |+...|.|+.||++|.|.+..|.+++
T Consensus 853 im~~Fr~Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 853 VMNDFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred HHHHHHhcCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEe
Confidence 99999987666 79999999999999999999988876 68889999999999999887776554
No 53
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.87 E-value=9.8e-21 Score=222.78 Aligned_cols=273 Identities=15% Similarity=0.202 Sum_probs=192.8
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc-
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR- 1405 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr- 1405 (1953)
-.|+.+|.-+|. |.--..|.|||.+..+....|.-+|..-|++.|.|+|.++..-|..+|++||.+ .+-+||+|+
T Consensus 252 ~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG---~YdivIAtD~ 327 (569)
T KOG0346|consen 252 EDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG---LYDIVIATDD 327 (569)
T ss_pred chhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc---ceeEEEEccC
Confidence 347666665554 444567899999999999999999999999999999999999999999999973 333677777
Q ss_pred -------------------------c---------cccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1406 -------------------------A---------AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1406 -------------------------A---------GGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
. .++|||++.+++||+||.|-++..|++|+||+.|-|.+..+.-|.
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEe
Confidence 1 246999999999999999999999999999999999888876554
Q ss_pred EehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHH---HHHH
Q 000169 1452 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEER---RMTL 1528 (1953)
Q Consensus 1452 LvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eER---r~~L 1528 (1953)
.-. +..| .+++|...-..- ..+...+++.-.|+....+.-| +..+
T Consensus 408 ~P~------------------------e~~g----~~~le~~~~d~~----~~~~~qilqPY~f~~eevesfryR~eD~~ 455 (569)
T KOG0346|consen 408 SPK------------------------EEFG----KESLESILKDEN----RQEGRQILQPYQFRMEEVESFRYRAEDAL 455 (569)
T ss_pred cch------------------------HHhh----hhHHHHHHhhHH----hhcCccccccccchHHHHHHHHHHHHHHH
Confidence 321 1112 134554443211 2233448888888877555444 1222
Q ss_pred HHH---HhhhhhhhccccCCCCHHHHHHHHcCCHHHHHHHhhhhhhcCcchhccccccchHHHhhchHHHHHHHhhhcCC
Q 000169 1529 ETL---LHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1605 (1953)
Q Consensus 1529 e~L---Le~ee~~~e~~~~v~~~EeLN~~lARs~eE~~lf~~mD~er~~~~~l~~~~elP~~l~~~~~e~~~~~~~~~k~ 1605 (1953)
++. .-.+.+.+|...+.+..|.|...++.++.|+.++ ++|..........|...||+||.. ++.....+.
T Consensus 456 ravTkvAvreaR~kEikqEll~SeKLK~~FeeNprdl~lL-rhDkpl~~~~~qphL~dvpeYlvp------~alr~~~~~ 528 (569)
T KOG0346|consen 456 RAVTKVAVREARLKEIKQELLNSEKLKAFFEENPRDLQLL-RHDKPLRLAIVQPHLKDVPEYLVP------EALRGVVKS 528 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcChHHHHHh-hcCCcccccccchhhccCchhhCC------HHHhhcccc
Confidence 222 2235666777778899999999999999999999 888888777778899999999953 222222111
Q ss_pred --CCcccccccccccCcchhhhhhhcCCCCCCCCCCccc
Q 000169 1606 --PSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEV 1642 (1953)
Q Consensus 1606 --~~~~~~~~~~~~~~~~~~~~erkr~~~~~k~~~~k~~ 1642 (1953)
..+.++.++......+-.++-|+-.|+++|++|++.+
T Consensus 529 ~k~r~~g~~~~r~n~~rk~~kp~r~f~~kg~K~~pl~~~ 567 (569)
T KOG0346|consen 529 VKTRAPGFSPFRNNKRRKVQKPLRKFQPKGGKRDPLKTF 567 (569)
T ss_pred cccccCCCccchhhhhhhccCchhhcCCCCCCCCccccc
Confidence 2335555654442111122333344788888888754
No 54
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.86 E-value=2.6e-20 Score=223.11 Aligned_cols=355 Identities=21% Similarity=0.236 Sum_probs=244.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-----CeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-----PHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G-----P~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
.+.+.|...|...+. +...|-|.-||+|||+..+..++..+. +..|. -+|||.|+. |..|-..-+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~-r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALY-RLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHH-HcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 577788888877775 777788999999999998886665443 23333 479999998 5556555555543
Q ss_pred --CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCCchh--HHHHHhh
Q 000169 1074 --PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRES--VLARDLD 1146 (1953)
Q Consensus 1074 --PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN~~S--KlsraLk 1146 (1953)
.++.+-.+.|+.+.... ..+....+|+|||++++..+. ..|.--...++|+|||+||..... .+-..+.
T Consensus 166 k~h~fSaGLiiGG~~~k~E----~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~ 241 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFE----LERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIE 241 (758)
T ss_pred hccccccceeecCchhHHH----HHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHH
Confidence 35666666677664322 244678899999999998764 446666789999999999976443 3444555
Q ss_pred hcccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.++.. .-||+|||+..+ ..+|.- |++-+|.+..
T Consensus 242 ~lP~~RQTLLFSATqt~s-vkdLaR-LsL~dP~~vs-------------------------------------------- 275 (758)
T KOG0343|consen 242 NLPKKRQTLLFSATQTKS-VKDLAR-LSLKDPVYVS-------------------------------------------- 275 (758)
T ss_pred hCChhheeeeeecccchh-HHHHHH-hhcCCCcEEE--------------------------------------------
Confidence 56544 479999999433 333322 1112221111
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEe---ccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRC---RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c---~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
+.. .-++. .|+
T Consensus 276 ----------------------vhe~a~~atP~--------------------------------------------~L~ 289 (758)
T KOG0343|consen 276 ----------------------VHENAVAATPS--------------------------------------------NLQ 289 (758)
T ss_pred ----------------------EeccccccChh--------------------------------------------hhh
Confidence 000 00000 000
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCH
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSL 1380 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~ 1380 (1953)
+. -.++....|+.+|-..+... -..|.|||........++.+.|... |++...|+|.+++
T Consensus 290 Q~----------------y~~v~l~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q 351 (758)
T KOG0343|consen 290 QS----------------YVIVPLEDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQ 351 (758)
T ss_pred he----------------EEEEehhhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhH
Confidence 00 00122233555555555442 3468999998888888888877654 8999999999999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhh
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1460 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~ 1460 (1953)
..|..+..+|.. .-.++|++|+++++|||++.+|+||-||.|-+...|+||.||+.|.+-..+..++..
T Consensus 352 ~~R~ev~~~F~~---~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~-------- 420 (758)
T KOG0343|consen 352 KKRIEVYKKFVR---KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT-------- 420 (758)
T ss_pred HHHHHHHHHHHH---hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc--------
Confidence 999999999986 334799999999999999999999999999999999999999999999999877754
Q ss_pred hhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcccccccCCHHHHHHHHHHHHhhhhh
Q 000169 1461 SHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEER 1537 (1953)
Q Consensus 1461 s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~kst~eERr~~Le~LLe~ee~ 1537 (1953)
.|-||.++.+|++.|..+...-|+.++ -.+-+..|++||....+
T Consensus 421 ---------------------------psEeE~~l~~Lq~k~I~i~~i~i~~~k------~~~i~~~l~~ll~~~~e 464 (758)
T KOG0343|consen 421 ---------------------------PSEEEAMLKKLQKKKIPIKEIKIDPEK------LTSIRNKLEALLAKDPE 464 (758)
T ss_pred ---------------------------chhHHHHHHHHHHcCCCHHhhccCHHH------hhhHHHHHHHHHhhCHH
Confidence 355677777777766555444444332 12456678888876543
No 55
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2.5e-21 Score=230.49 Aligned_cols=346 Identities=18% Similarity=0.197 Sum_probs=213.5
Q ss_pred CCcHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
.+.|-|...+.|++.-.+ ..+..+++..||+|||+.....|..++..+ -.+-++|||||.. |+.|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 699999999999987655 233457899999999999888777777544 3445789999987 677889999999
Q ss_pred CCC--CeEEEEecchhhHhHHHHH--HHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCchhHHH--H
Q 000169 1073 LPS--VSCIYYVGAKDQRSRLFSQ--EVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESVLA--R 1143 (1953)
Q Consensus 1073 aPs--lkVvvy~Gs~deRk~l~~q--ei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~SKls--r 1143 (1953)
+++ +.|+...|-...+.+.... .......||+|+|+++++.+... |.--+..|+|||||+||.+....-| .
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~ 318 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDT 318 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHH
Confidence 975 5666667766555443221 11234569999999999988543 3344778999999999976443322 1
Q ss_pred HhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000169 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223 (1953)
Q Consensus 1144 aLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhkl 1223 (1953)
.+.......++.+++ .|..+..-.-|..|... ...|.+ ....|.++
T Consensus 319 v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e~---~t~~~~-----------------------~~~~l~kL 364 (620)
T KOG0350|consen 319 VMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSEL---LTKLGK-----------------------LYPPLWKL 364 (620)
T ss_pred HHHHhCCchhhcChh--------hhhhhcccCCchhhHHH---HhhcCC-----------------------cCchhHhh
Confidence 111222222221111 11111100001100000 000000 00011111
Q ss_pred hhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000169 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (1953)
Q Consensus 1224 LrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRK 1303 (1953)
+-+ ..+...|.|. ..|+
T Consensus 365 ~~s--------atLsqdP~Kl------------------------------------------------------~~l~- 381 (620)
T KOG0350|consen 365 VFS--------ATLSQDPSKL------------------------------------------------------KDLT- 381 (620)
T ss_pred hcc--------hhhhcChHHH------------------------------------------------------hhhh-
Confidence 111 1111111110 0000
Q ss_pred hcCCCCCCCCC---------ccccchhhhhhcc-cHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH----HcCC
Q 000169 1304 TCNHPLLNYPY---------FSDLSKDFLVKSC-GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL 1369 (1953)
Q Consensus 1304 iCNHP~L~~p~---------l~dls~d~Li~~S-GKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~----~rGi 1369 (1953)
.++|-++... ...+....++... -|-..+..++.. ....++|+|+........|...|+ ...+
T Consensus 382 -l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 382 -LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred -cCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 1111111000 0000000111111 133344444443 357899999999888777777766 3466
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
++-.++|....+.|.+++.+|+.++.. +||+++++++|+|+..++.||+||+|-.-..|+||+||+.|.||...+.
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~ 534 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAI 534 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEE
Confidence 677799999999999999999987766 7899999999999999999999999999999999999999999998763
No 56
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=1.4e-19 Score=234.70 Aligned_cols=310 Identities=19% Similarity=0.132 Sum_probs=197.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slk 1077 (1953)
+|+|+|.+++.-+ +..+.|.|++.+||+|||+.+...+...+. ..+++|||||.. |+.++..+|.++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 6999999999753 335779999999999999998666555443 346899999976 88889999988754 678
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCch--hHHHHHhhhc----c
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY----R 1149 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L----~ 1149 (1953)
+..+.|..+.... .....+|+|+|++.+...... ..-...++|||||+|.+.+.. ..+-..+..+ .
T Consensus 97 v~~~tGd~~~~~~------~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 97 VGISTGDYDSRDE------WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEEEeCCcCcccc------ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 8888886543321 124579999999977432111 111256999999999996532 2222222222 3
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
..+.++||||.- +..++..+++ ...|.+ . .+|+
T Consensus 171 ~~qii~lSATl~--n~~~la~wl~---~~~~~~------~----------------------------------~rpv-- 203 (737)
T PRK02362 171 DLQVVALSATIG--NADELADWLD---AELVDS------E----------------------------------WRPI-- 203 (737)
T ss_pred CCcEEEEcccCC--CHHHHHHHhC---CCcccC------C----------------------------------CCCC--
Confidence 346899999962 3444433222 111100 0 0000
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
.....+... ....... ... .
T Consensus 204 -------------~l~~~v~~~---------------~~~~~~~--~~~------------------------------~ 223 (737)
T PRK02362 204 -------------DLREGVFYG---------------GAIHFDD--SQR------------------------------E 223 (737)
T ss_pred -------------CCeeeEecC---------------Ceecccc--ccc------------------------------c
Confidence 000000000 0000000 000 0
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc----------------------
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1367 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r---------------------- 1367 (1953)
+ ....+...+ .++......+.++||||..+..++.++..|...
T Consensus 224 ~--------------~~~~~~~~~-~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (737)
T PRK02362 224 V--------------EVPSKDDTL-NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIRE 288 (737)
T ss_pred C--------------CCccchHHH-HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 0 000011111 122222346789999999988877766666432
Q ss_pred --------------CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cC-----C
Q 000169 1368 --------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-----P 1424 (1953)
Q Consensus 1368 --------------GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fD-----p 1424 (1953)
...+..+||+++.++|..+.+.|+++... +|++|.+++.|+|+++..+||. || .
T Consensus 289 ~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~ 365 (737)
T PRK02362 289 VSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQ 365 (737)
T ss_pred ccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCce
Confidence 13466789999999999999999975544 7999999999999999988886 77 5
Q ss_pred CCCchhHHhhhhcccccCCcce
Q 000169 1425 DPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1425 pWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
|.+...|.|++|||+|.|....
T Consensus 366 ~~s~~~y~Qm~GRAGR~g~d~~ 387 (737)
T PRK02362 366 PIPVLEYHQMAGRAGRPGLDPY 387 (737)
T ss_pred eCCHHHHHHHhhcCCCCCCCCC
Confidence 7889999999999999998643
No 57
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=8.6e-21 Score=224.68 Aligned_cols=332 Identities=21% Similarity=0.356 Sum_probs=230.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC--C
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP--S 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaP--s 1075 (1953)
..|||||.+.|..|.-.- .-+.||+..++|.|||+..+..++... +.+||+|-.++ +.||...|..|.. .
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~tik------K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTIK------KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeeec------ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 379999999999886411 124689999999999999877665432 47899998874 9999999999973 3
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----------hhcccccCccEEEcccccccCCchhHHHHHh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----------~s~L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
-.++.|.....++ ......||||||.++... ..+|....|.++|+||.|.+ +..-..+.|
T Consensus 374 ~~i~rFTsd~Ke~--------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRRVl 443 (776)
T KOG1123|consen 374 DQICRFTSDAKER--------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVL 443 (776)
T ss_pred cceEEeecccccc--------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHHHH
Confidence 4455555544332 345678999999998643 35677789999999999998 334444555
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFL-lP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
.-..+.+.|+||||-+..+ |=..=|||| .|.++.. .|.+-..
T Consensus 444 siv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA-----------------------nWmdL~~------------ 486 (776)
T KOG1123|consen 444 SIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA-----------------------NWMDLQK------------ 486 (776)
T ss_pred HHHHHHhhccceeEEeecc--ccccccceeecchhhhc-----------------------cHHHHHh------------
Confidence 5567888999999988764 111223554 4444320 1111000
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
+ ..+-.-....|||+||+.-...|-..... . .+ |
T Consensus 487 ---------k---GhIA~VqCaEVWCpMt~eFy~eYL~~~t~-----------k--------------r~------l--- 520 (776)
T KOG1123|consen 487 ---------K---GHIAKVQCAEVWCPMTPEFYREYLRENTR-----------K--------------RM------L--- 520 (776)
T ss_pred ---------C---CceeEEeeeeeecCCCHHHHHHHHhhhhh-----------h--------------hh------e---
Confidence 0 12233345679999999655544321100 0 00 0
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
| .+....||....-++......|+|+|||+...- .|.+|--..|-+| |.|.|++.+|.
T Consensus 521 -----L------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvf---ALk~YAikl~Kpf--IYG~Tsq~ERm 578 (776)
T KOG1123|consen 521 -----L------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVF---ALKEYAIKLGKPF--IYGPTSQNERM 578 (776)
T ss_pred -----e------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHH---HHHHHHHHcCCce--EECCCchhHHH
Confidence 0 112235888888888888889999999997654 4455555556666 78999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcc----eEEEEEEeh
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKR----EVKVIYMEA 1454 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKK----eV~VyrLvT 1454 (1953)
++++.|.. +..+..|.|| ++|...+||+.|+++|-..+.. +-.++.||.||+.|.-..+ .+..|-|++
T Consensus 579 ~ILqnFq~-n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS 651 (776)
T KOG1123|consen 579 KILQNFQT-NPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVS 651 (776)
T ss_pred HHHHhccc-CCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeee
Confidence 99999986 5556666665 9999999999999999998886 7778999999999986332 245566665
No 58
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.84 E-value=5.5e-20 Score=219.85 Aligned_cols=341 Identities=20% Similarity=0.249 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--------hCCCCC-eEEEechHHH-HHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--------KGNYGP-HLIIVPNAVL-VNWKSEL 1069 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~--------kg~~GP-~LIVVP~SLL-~QW~~Ef 1069 (1953)
..-|.|..++--++. +.+.|...|+|+|||...+..|...+.. +...|| .+|++|+.-| .|...|-
T Consensus 267 eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 455788888876554 7778999999999997765544433322 222344 5888899854 5566777
Q ss_pred HHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHHHh
Q 000169 1070 HKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1070 ~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
.+|.. +++++...|+...-.+-+ -....++|+|.|+..|+... ..|..-...|||+|||.+|-...
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~f---qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg------- 412 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGF---QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG------- 412 (673)
T ss_pred HHhcccccceEEEEecccchhhhhh---hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc-------
Confidence 77763 366776666654332211 12457899999999998653 34555578899999999985421
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
|....-=+|+.-|..| .... .+....++ ++ +.
T Consensus 413 --fE~dv~~iL~~mPssn---------------------------------~k~~----tde~~~~~------~~---~~ 444 (673)
T KOG0333|consen 413 --FEPDVQKILEQMPSSN---------------------------------AKPD----TDEKEGEE------RV---RK 444 (673)
T ss_pred --ccHHHHHHHHhCCccc---------------------------------cCCC----ccchhhHH------HH---Hh
Confidence 1111100111111111 0000 00000010 01 11
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
.|.-. ---.........|++.-..+.+.+...-....... .. -
T Consensus 445 ~~~~~---------k~yrqT~mftatm~p~verlar~ylr~pv~vtig~-----~g-----------------------k 487 (673)
T KOG0333|consen 445 NFSSS---------KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGS-----AG-----------------------K 487 (673)
T ss_pred hcccc---------cceeEEEEEecCCChHHHHHHHHHhhCCeEEEecc-----CC-----------------------C
Confidence 11100 00011223344555544444443322211100000 00 0
Q ss_pred CCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqe 1385 (1953)
++|.+. ..-+.+..+.|+..|..||... ....+|||.+....+|.|++.|...||.+++|||+-++++|+.
T Consensus 488 ~~~rve-------Q~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 488 PTPRVE-------QKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred Cccchh-------eEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 111110 0112345677888899988864 4678999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1386 aIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+|..|+.+..+ +|++|+++|+|||++++.+||+||..-+...|.|||||++|.|+...+.-|+
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSfl 621 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFL 621 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEe
Confidence 99999987777 8999999999999999999999999999999999999999999998876654
No 59
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.9e-19 Score=213.71 Aligned_cols=319 Identities=20% Similarity=0.275 Sum_probs=222.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCC--C--CeEEEechHHHHH----HHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNY--G--PHLIIVPNAVLVN----WKSEL 1069 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~--G--P~LIVVP~SLL~Q----W~~Ef 1069 (1953)
..+.|-|..++..++. +....+-..||+|||+..+..+...+..+ ... + -.|||.|+.-+.- -...|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 3688999999988876 77778888999999999999888776332 222 2 3599999985443 34456
Q ss_pred HHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEcccccccCCch--hHHHH
Q 000169 1070 HKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (1953)
Q Consensus 1070 ~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAHrLKN~~--SKlsr 1143 (1953)
..+++++.+..+.|+......+- .+.....+|+|.|++.+..- ...+.-....++|+|||+++...+ ..+..
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~--~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ 180 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIK--TFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNT 180 (567)
T ss_pred HHhhhccceEEEecCccHHHHHH--HHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHH
Confidence 66779999999999866554432 35567789999999988643 334655578899999999997543 34455
Q ss_pred HhhhcccceeEE-ecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1144 DLDRYRCQRRLL-LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1144 aLk~L~a~~RLL-LTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
.|..++-.+|-+ .|||-.+. ..+| ..
T Consensus 181 ILs~LPKQRRTGLFSATq~~~-v~dL---~r------------------------------------------------- 207 (567)
T KOG0345|consen 181 ILSFLPKQRRTGLFSATQTQE-VEDL---AR------------------------------------------------- 207 (567)
T ss_pred HHHhcccccccccccchhhHH-HHHH---HH-------------------------------------------------
Confidence 555666555543 46653111 0000 00
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
+-|| ..+...|... . .
T Consensus 208 ----aGLR-----------Npv~V~V~~k---------------~----------~------------------------ 223 (567)
T KOG0345|consen 208 ----AGLR-----------NPVRVSVKEK---------------S----------K------------------------ 223 (567)
T ss_pred ----hhcc-----------Cceeeeeccc---------------c----------c------------------------
Confidence 0000 0011111000 0 0
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCH
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSL 1380 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~ 1380 (1953)
.+.|.-.. .....+...-|+..|..+|.. ....|+|||.......++....|... .+.++.+||.++.
T Consensus 224 --~~tPS~L~------~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 224 --SATPSSLA------LEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred --ccCchhhc------ceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 00000000 000112234577778777776 56789999999888888888777654 7789999999999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEe
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYME 1453 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (1953)
..|..+++.|...... +|++|+++++|||++++|.||.||||-+|..+.||.||+.|.|......||.+-
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc
Confidence 9999999999973333 799999999999999999999999999999999999999999999888777653
No 60
>PRK01172 ski2-like helicase; Provisional
Probab=99.84 E-value=7.4e-19 Score=226.06 Aligned_cols=303 Identities=19% Similarity=0.178 Sum_probs=192.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-sl 1076 (1953)
.+|+|+|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|+|+|.. |+.++.+++.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 369999999998764 37789999999999999987666555432 35789999976 77888899888653 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCch--hHHHHHhhh---c-
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR---Y- 1148 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~---L- 1148 (1953)
++....|..+.... .....+|+|+|++.+..... ...-.++++|||||+|.+.+.. ..+...+.. +
T Consensus 94 ~v~~~~G~~~~~~~------~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPD------FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred eEEEEeCCCCCChh------hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 67677775443211 12357999999987643211 1112357899999999996432 122222222 2
Q ss_pred ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1149 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1149 ~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
...+.++||||+- +.. .|.+|+.......
T Consensus 168 ~~~riI~lSATl~--n~~------------------~la~wl~~~~~~~------------------------------- 196 (674)
T PRK01172 168 PDARILALSATVS--NAN------------------ELAQWLNASLIKS------------------------------- 196 (674)
T ss_pred cCCcEEEEeCccC--CHH------------------HHHHHhCCCccCC-------------------------------
Confidence 2346799999962 223 3344443211000
Q ss_pred HHHHHhhhhcCCCCceEE-EEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1229 LRRRVEDVEGSLPPKVSI-VLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~-vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
..-|..... ++... .+| .+.. .
T Consensus 197 ---------~~r~vpl~~~i~~~~------~~~----------~~~~-~------------------------------- 219 (674)
T PRK01172 197 ---------NFRPVPLKLGILYRK------RLI----------LDGY-E------------------------------- 219 (674)
T ss_pred ---------CCCCCCeEEEEEecC------eee----------eccc-c-------------------------------
Confidence 000111111 11000 000 0000 0
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--------------------
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-------------------- 1367 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-------------------- 1367 (1953)
. .+. .+..++.+....+.++||||..+..++.+...|...
T Consensus 220 ------------~-------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 279 (674)
T PRK01172 220 ------------R-------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDS 279 (674)
T ss_pred ------------c-------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHH
Confidence 0 000 012233333456788999999888877777766542
Q ss_pred -----CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCC---------CCCchhHHh
Q 000169 1368 -----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP---------DPNPKNEEQ 1433 (1953)
Q Consensus 1368 -----GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDp---------pWNP~~d~Q 1433 (1953)
...+..+||+++.++|..+.+.|+++... +|++|.+++.|+|+++ .+||++|. ++++..+.|
T Consensus 280 L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Q 355 (674)
T PRK01172 280 LNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQ 355 (674)
T ss_pred HHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHH
Confidence 12356689999999999999999975544 7999999999999996 57777764 357788999
Q ss_pred hhhcccccCCcce
Q 000169 1434 AVARAHRIGQKRE 1446 (1953)
Q Consensus 1434 AiGRAhRIGQKKe 1446 (1953)
++|||+|.|....
T Consensus 356 m~GRAGR~g~d~~ 368 (674)
T PRK01172 356 MIGRAGRPGYDQY 368 (674)
T ss_pred HhhcCCCCCCCCc
Confidence 9999999997655
No 61
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.5e-19 Score=209.09 Aligned_cols=314 Identities=20% Similarity=0.211 Sum_probs=221.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kwa--Psl 1076 (1953)
+..|.|..++..++. +.+||=|.-+|+|||......|..-+...+..--.||++|+.-+ .|-.+.|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 456889999999987 89999999999999999888777766555555567999999854 45444454432 357
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh------cccccCccEEEcccccccCCchh--HHHHHhhhc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS------KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRY 1148 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s------~L~kikWd~VIIDEAHrLKN~~S--KlsraLk~L 1148 (1953)
++.++.|..+.-. .......+++|||+|++.+..... .+...+..++|+|||.++.+... .+.-....+
T Consensus 105 K~~vivGG~d~i~---qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l 181 (442)
T KOG0340|consen 105 KVSVIVGGTDMIM---QAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL 181 (442)
T ss_pred eEEEEEccHHHhh---hhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC
Confidence 8888888766543 234557789999999998865421 12223568999999999976432 122222234
Q ss_pred ccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1149 RCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1149 ~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
+.. .-+++|+|- .+++.+| |..|+.+....
T Consensus 182 P~~RQtLlfSATi-td~i~ql---------------------~~~~i~k~~a~--------------------------- 212 (442)
T KOG0340|consen 182 PKPRQTLLFSATI-TDTIKQL---------------------FGCPITKSIAF--------------------------- 212 (442)
T ss_pred CCccceEEEEeeh-hhHHHHh---------------------hcCCcccccce---------------------------
Confidence 444 579999994 2222222 22222110000
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.+ .+....| .-..+|.
T Consensus 213 ~~-----e~~~~vs-------------tvetL~q---------------------------------------------- 228 (442)
T KOG0340|consen 213 EL-----EVIDGVS-------------TVETLYQ---------------------------------------------- 228 (442)
T ss_pred EE-----eccCCCC-------------chhhhhh----------------------------------------------
Confidence 00 0000000 0001111
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHh-cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqea 1386 (1953)
...++...+|-.+|..+|..... .+..++||++.+..+.+|.-.|+..++....+|+-+++.+|...
T Consensus 229 ------------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 229 ------------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred ------------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 01112234555667777777655 56779999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+-+|+++... +|++|+++++|||+++++.||+||.|-+|..|++|.||..|.|......
T Consensus 297 LsrFrs~~~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ai 355 (442)
T KOG0340|consen 297 LSRFRSNAAR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAI 355 (442)
T ss_pred HHHHhhcCcc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceE
Confidence 9999986655 7999999999999999999999999999999999999999999887753
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.83 E-value=6.4e-19 Score=209.53 Aligned_cols=296 Identities=16% Similarity=0.175 Sum_probs=185.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhH-----------h
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQR-----------S 1089 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy~Gs~deR-----------k 1089 (1953)
.++..+||+|||.+++.++...+. ....+++++|+|.. ++.++.+.+..++.. .+..+++..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIK-SQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 478899999999999988877664 34567899999965 788899999998765 344444432210 0
Q ss_pred HHHHHHH----hhccccEEEEeHHHHHhhhhc--------ccccCccEEEcccccccCCchh-HHHHHhhhcc--cceeE
Q 000169 1090 RLFSQEV----AALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKDRES-VLARDLDRYR--CQRRL 1154 (1953)
Q Consensus 1090 ~l~~qei----~~~~fdVVITTYEsL~kd~s~--------L~kikWd~VIIDEAHrLKN~~S-KlsraLk~L~--a~~RL 1154 (1953)
....... .....+|+|+|++.+...... +..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 0000000 112467999999988654322 2223447999999999975322 2333333332 33579
Q ss_pred EecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 000169 1155 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234 (1953)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKk 1234 (1953)
++|||+- ..+.. |...+......
T Consensus 160 ~~SATlp----~~l~~---------------~~~~~~~~~~~-------------------------------------- 182 (358)
T TIGR01587 160 LMSATLP----KFLKE---------------YAEKIGYVEFN-------------------------------------- 182 (358)
T ss_pred EEecCch----HHHHH---------------HHhcCCCcccc--------------------------------------
Confidence 9999962 11111 10000000000
Q ss_pred hhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 000169 1235 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1314 (1953)
Q Consensus 1235 DVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~ 1314 (1953)
...+..... ....|++....
T Consensus 183 ---~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~- 202 (358)
T TIGR01587 183 ---EPLDLKEER--------------------------------------------------------RFERHRFIKIE- 202 (358)
T ss_pred ---cCCCCcccc--------------------------------------------------------ccccccceeec-
Confidence 000000000 00000000000
Q ss_pred ccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCC--eEEeecCCCCHHHHHH----HHH
Q 000169 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRES----AIV 1388 (1953)
Q Consensus 1315 l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGi--kylRLDGsTs~eeRqe----aIe 1388 (1953)
.....|...+..++..+ ..+.++||||+....++.+..+|...+. .+..+||.++..+|.+ +++
T Consensus 203 ---------~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~ 272 (358)
T TIGR01587 203 ---------SDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLE 272 (358)
T ss_pred ---------cccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 00012344555555433 4578999999999999999999988776 4889999999999976 488
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc----eEEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR----EVKVIYM 1452 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK----eV~VyrL 1452 (1953)
.|.++... +|++|+++++|||+ .+++||+++.+ +..++|++||++|.|.+. .|.||+.
T Consensus 273 ~f~~~~~~---ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 273 EMKKNEKF---VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred HhcCCCCe---EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 99864433 79999999999999 48999998776 789999999999999764 3555544
No 63
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.83 E-value=2.9e-19 Score=213.56 Aligned_cols=314 Identities=20% Similarity=0.268 Sum_probs=211.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---CC-CCeEEEechHH-HHHHHH---HHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---NY-GPHLIIVPNAV-LVNWKS---ELHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg---~~-GP~LIVVP~SL-L~QW~~---Ef~K 1071 (1953)
+|.+-|...+.-++. +...+.+.-||+|||+.++..+..++.... .. -.+|||||+.- ..|-.. ++.+
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 678888888776665 668899999999999999887776654321 11 24799999984 445444 4556
Q ss_pred HCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCch--hHHHHHhh
Q 000169 1072 WLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1146 (1953)
Q Consensus 1072 waPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~--SKlsraLk 1146 (1953)
+.++..+.+..|+...+... +.+.. ..+++|.|++.|..+... +.-...+++|||||+|+.... --+-+.+.
T Consensus 180 ~h~~~~v~~viGG~~~~~e~--~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEA--DKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIK 256 (543)
T ss_pred hCCCcceEEEeCCccchHHH--HHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHH
Confidence 66777777777766554332 12333 889999999999877433 222244789999999986422 22333334
Q ss_pred hcccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.+... .-+++|||-
T Consensus 257 ~lpk~rqt~LFSAT~----------------------------------------------------------------- 271 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQ----------------------------------------------------------------- 271 (543)
T ss_pred hccccceeeEeeCCC-----------------------------------------------------------------
Confidence 44322 245566652
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
++.-+.+.+-........++..+...
T Consensus 272 ---------------------------~~kV~~l~~~~L~~d~~~v~~~d~~~--------------------------- 297 (543)
T KOG0342|consen 272 ---------------------------PSKVKDLARGALKRDPVFVNVDDGGE--------------------------- 297 (543)
T ss_pred ---------------------------cHHHHHHHHHhhcCCceEeecCCCCC---------------------------
Confidence 11111111000000000000000000
Q ss_pred CCCCCCCCCccccchhh-hhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~-Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
.+..+.+...+ +.....+|-+|..+|.+.... .||+|||....+..++.+.|....+++..|||..++..|.
T Consensus 298 ------~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 298 ------RETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRT 370 (543)
T ss_pred ------cchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccc
Confidence 00000001111 122234567777777775433 8999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
.+..+|...++. ||++|+++++|+|++++|.||-||+|-+|..|+||+||+.|-|-+.+...
T Consensus 371 ~~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL 432 (543)
T KOG0342|consen 371 STFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALL 432 (543)
T ss_pred hHHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEE
Confidence 999999987776 89999999999999999999999999999999999999999887766533
No 64
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=6.3e-19 Score=210.13 Aligned_cols=309 Identities=18% Similarity=0.247 Sum_probs=207.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC---CCeEEEechHHHH-H---HHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY---GPHLIIVPNAVLV-N---WKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~---GP~LIVVP~SLL~-Q---W~~Ef~Kw 1072 (1953)
...|.|...|.-.+- +...+-|..||+|||..++..|+..+-+++.. -++||+||+.-|. | ....+..|
T Consensus 203 ~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 456778887765543 44556778899999999888777655445433 3689999998443 3 44556666
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCch--hHHHHHhhh
Q 000169 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (1953)
Q Consensus 1073 aPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~--SKlsraLk~ 1147 (1953)
+ ++.|....|+-+.+.+- ......+||||.|++.|+.+... |.-....++|+|||+||.... ..+...+..
T Consensus 279 t-~I~~~L~vGGL~lk~QE---~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~l 354 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQE---AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRL 354 (691)
T ss_pred c-cceeeeeecCccHHHHH---HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHh
Confidence 5 48888888887776432 34567899999999999987544 333356789999999996432 233333332
Q ss_pred cc-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1148 YR-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1148 L~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
.. .+.-+|+|||- ...+.||.++ - +++|+..
T Consensus 355 cpk~RQTmLFSATM-teeVkdL~sl---S--------------L~kPvri------------------------------ 386 (691)
T KOG0338|consen 355 CPKNRQTMLFSATM-TEEVKDLASL---S--------------LNKPVRI------------------------------ 386 (691)
T ss_pred ccccccceeehhhh-HHHHHHHHHh---h--------------cCCCeEE------------------------------
Confidence 22 23358888884 2223333221 0 1111111
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
++..+.. ....|..-..++|-
T Consensus 387 ----------------------fvd~~~~----------------------------------~a~~LtQEFiRIR~--- 407 (691)
T KOG0338|consen 387 ----------------------FVDPNKD----------------------------------TAPKLTQEFIRIRP--- 407 (691)
T ss_pred ----------------------EeCCccc----------------------------------cchhhhHHHheecc---
Confidence 0000000 00000000000000
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqea 1386 (1953)
. +..-+-.+|..++.++. ..+++||++....+..|.-.|-..|+++.-|||+.++.+|.+.
T Consensus 408 -------~----------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 408 -------K----------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred -------c----------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 0 00001123333444433 5689999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
++.|+....+ +||+|+++++|||+..+-+||+|+.|-+...|+||+||+.|.|...
T Consensus 469 L~kFk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG 524 (691)
T KOG0338|consen 469 LEKFKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG 524 (691)
T ss_pred HHHHHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc
Confidence 9999987777 8999999999999999999999999999999999999999999653
No 65
>PRK00254 ski2-like helicase; Provisional
Probab=99.82 E-value=2.3e-18 Score=223.07 Aligned_cols=314 Identities=16% Similarity=0.112 Sum_probs=191.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slk 1077 (1953)
+|+|+|.+++.- .+..+.+.|++.+||+|||+.+...|...+. ...+++|+|||.. |+.++..+|.+|.. +++
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~--~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLL--REGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHH--hcCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 799999999963 2234789999999999999999554443322 1346899999976 77888888888753 577
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCC--chhHHHHHhhhcc-cce
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1152 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L~-a~~ 1152 (1953)
+..+.|..+.... ....++|+|+|++.+...... ..--++++|||||+|.+.. ....+...+..+. ..+
T Consensus 98 v~~~~Gd~~~~~~------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~q 171 (720)
T PRK00254 98 VAMTTGDYDSTDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQ 171 (720)
T ss_pred EEEEeCCCCCchh------hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCc
Confidence 8888876543221 124679999999987533210 0112578999999999964 2334444444443 356
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
.++||||.- +..++- +|+........ .+|
T Consensus 172 iI~lSATl~--n~~~la------------------~wl~~~~~~~~-------------------------~rp------ 200 (720)
T PRK00254 172 ILGLSATVG--NAEELA------------------EWLNAELVVSD-------------------------WRP------ 200 (720)
T ss_pred EEEEEccCC--CHHHHH------------------HHhCCccccCC-------------------------CCC------
Confidence 899999972 234443 33321110000 000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000169 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~ 1312 (1953)
.|- ...+... ......... .. . +
T Consensus 201 -------v~l--~~~~~~~---------------~~~~~~~~~-~~---~---~-------------------------- 223 (720)
T PRK00254 201 -------VKL--RKGVFYQ---------------GFLFWEDGK-IE---R---F-------------------------- 223 (720)
T ss_pred -------Ccc--eeeEecC---------------CeeeccCcc-hh---c---c--------------------------
Confidence 000 0000000 000000000 00 0 0
Q ss_pred CCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH--------------------------
Q 000169 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-------------------------- 1366 (1953)
Q Consensus 1313 p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~-------------------------- 1366 (1953)
...+..++.++...+.++||||..+..++.+...|..
T Consensus 224 -----------------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (720)
T PRK00254 224 -----------------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPT 286 (720)
T ss_pred -----------------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Confidence 0001112222333577899999887766554433321
Q ss_pred -------cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE-------cCCCC-CchhH
Q 000169 1367 -------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDP-NPKNE 1431 (1953)
Q Consensus 1367 -------rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi-------fDppW-NP~~d 1431 (1953)
....+..+||+++.++|..+.+.|+++... +|++|.+++.|+|+++.++||. ++.++ ....+
T Consensus 287 ~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~ 363 (720)
T PRK00254 287 NEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEI 363 (720)
T ss_pred cHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHH
Confidence 123477899999999999999999976544 7999999999999999888874 33333 34578
Q ss_pred HhhhhcccccCCcceEEEEEE
Q 000169 1432 EQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
.|++|||+|.|..+.-.++.+
T Consensus 364 ~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 364 QQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred HHhhhccCCCCcCCCceEEEE
Confidence 999999999876544334433
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.82 E-value=1.3e-17 Score=212.89 Aligned_cols=414 Identities=15% Similarity=0.189 Sum_probs=238.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||...+..++- +.|+|+...||.|||++++..+ ++.... ...++||+|+. |..+|..++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa-~l~aL~--g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPL-YLNALT--GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHH-HHHhhc--CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 478887777765553 3457999999999999987664 332222 23589999987 66777777655542 45
Q ss_pred eEEEEecc-hhh-H-hHHHHHHHhhccccEEEEeHHHHHhh--hh-------cccccCccEEEcccccccCCchhHHHHH
Q 000169 1077 SCIYYVGA-KDQ-R-SRLFSQEVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1077 kVvvy~Gs-~de-R-k~l~~qei~~~~fdVVITTYEsL~kd--~s-------~L~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
.+.+..+. ... . ... ......++|+++|++.|..+ +. .+....+.++||||||.|.-.
T Consensus 141 sv~~~~~~s~~~~~~~~~---rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD------- 210 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANE---KRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD------- 210 (762)
T ss_pred cEEEEECCCCccccCHHH---HHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc-------
Confidence 55544332 111 1 111 11124689999999988432 11 122236789999999998421
Q ss_pred hhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCC------------------hHHHHhhhcCCcccCCCCCCCChh
Q 000169 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN------------------RKAFHDWFSQPFQKEGPTHNADDD 1206 (1953)
Q Consensus 1145 Lk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S------------------~k~F~e~F~kPf~k~g~~~~~e~d 1206 (1953)
. +..-|++||.|-.. ..+|..++-+...+-.. .....+.|..+ +
T Consensus 211 --e--artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--~---------- 272 (762)
T TIGR03714 211 --S--AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--N---------- 272 (762)
T ss_pred --c--CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--c----------
Confidence 1 33458899977533 34666654332221110 00111111110 0
Q ss_pred hHHHHHHHHHHHHHHHHhhH-HHHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH-
Q 000169 1207 WLETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK- 1277 (1953)
Q Consensus 1207 ~l~eEek~liI~RLhklLrP-FmLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ek- 1277 (1953)
+.........+.+...|+. +++.|-+.-+-. +....+|. ..| .+..-+.+.+...-.+.+......
T Consensus 273 -l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~---~~~v~ivD-~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~ 347 (762)
T TIGR03714 273 -LYSEEYFELVRHINLALRAHYLFKRNKDYVVT---NGEVVLLD-RITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAM 347 (762)
T ss_pred -cCChhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceee
Confidence 0000111123334444443 333333222211 11122221 112 244445555544333322221100
Q ss_pred -----hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCee
Q 000169 1278 -----RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRV 1347 (1953)
Q Consensus 1278 -----~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKV 1347 (1953)
...+................-..|.++.+-+.+..|.... ...........|+..+...+..+...+..|
T Consensus 348 a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pv 427 (762)
T TIGR03714 348 ASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPV 427 (762)
T ss_pred eeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCE
Confidence 0000000000000001111234566666655544443221 111223344578888888888888889999
Q ss_pred EEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCc---------cCCe
Q 000169 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---------SADT 1418 (1953)
Q Consensus 1348 LIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQ---------aADt 1418 (1953)
||||..+...+.|...|...|+++..|+|.+...+|..+...|+.+ . ++++|+.+|+|+|+. ..++
T Consensus 428 LIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~---VlIATdmAgRGtDI~l~~~v~~~GGL~v 502 (762)
T TIGR03714 428 LLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--A---VTVATSMAGRGTDIKLGKGVAELGGLAV 502 (762)
T ss_pred EEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--e---EEEEccccccccCCCCCccccccCCeEE
Confidence 9999999999999999999999999999999988887776666542 2 799999999999999 8899
Q ss_pred EEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1419 VIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
||.||++-+... .|+.||++|.|.+..+..| ++.++.+..
T Consensus 503 Iit~~~ps~rid-~qr~GRtGRqG~~G~s~~~--is~eD~l~~ 542 (762)
T TIGR03714 503 IGTERMENSRVD-LQLRGRSGRQGDPGSSQFF--VSLEDDLIK 542 (762)
T ss_pred EEecCCCCcHHH-HHhhhcccCCCCceeEEEE--Eccchhhhh
Confidence 999999977655 9999999999988876544 344555543
No 67
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=2.3e-18 Score=206.43 Aligned_cols=352 Identities=20% Similarity=0.281 Sum_probs=201.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCC-eEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGP-HLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----g~~GP-~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
.+.-.|..+|--++. +...++-..||+|||+..+..|...+... ...|+ .|||||+. |+.|-.+-+.+.
T Consensus 159 ~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 345567888877776 77889999999999999998887766432 22344 59999988 666767777777
Q ss_pred CCCCeEEE---EecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCchhHHHHHhh
Q 000169 1073 LPSVSCIY---YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1073 aPslkVvv---y~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
.....++| ..|+.....+ ..-...+.+|+|.|++++..+... +.--...+||+|||+++..-+.
T Consensus 235 l~~~hWIVPg~lmGGEkkKSE---KARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGf------- 304 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSE---KARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGF------- 304 (708)
T ss_pred hcCceEEeeceeecccccccH---HHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccc-------
Confidence 65544443 2333221111 112245789999999999987543 2223456799999999853110
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
-.++--+++.+.... + .+.+...+..++..+|-.
T Consensus 305 ------------------ekdit~Il~~v~~~~----------------~------------~e~~~~~lp~q~q~mLlS 338 (708)
T KOG0348|consen 305 ------------------EKDITQILKAVHSIQ----------------N------------AECKDPKLPHQLQNMLLS 338 (708)
T ss_pred ------------------hhhHHHHHHHHhhcc----------------c------------hhcccccccHHHHhHhhh
Confidence 011222222221100 0 000000011122222211
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
-.|.-....+. ++.-+....|..+-+..|. +.....+...|.
T Consensus 339 ATLtd~V~rLa-~~sLkDpv~I~ld~s~~~~-------------------------------------~p~~~a~~ev~~ 380 (708)
T KOG0348|consen 339 ATLTDGVNRLA-DLSLKDPVYISLDKSHSQL-------------------------------------NPKDKAVQEVDD 380 (708)
T ss_pred hhhHHHHHHHh-hccccCceeeeccchhhhc-------------------------------------CcchhhhhhcCC
Confidence 11111111110 0111111111111111000 000111122222
Q ss_pred CCCCCCC----Cccccchhh-hhhcccHHHHHHHHHHHH--HhcCCeeEEeechhHHHHHHHHHHH----H---------
Q 000169 1307 HPLLNYP----YFSDLSKDF-LVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQ----W--------- 1366 (1953)
Q Consensus 1307 HP~L~~p----~l~dls~d~-Li~~SGKLelLdrIL~kL--katGhKVLIFSQft~~LDILed~L~----~--------- 1366 (1953)
-|+-..- ..+.+...+ ++..--++.+|..+|... .....|+|||....++.+.=.+.|. .
T Consensus 381 ~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~ 460 (708)
T KOG0348|consen 381 GPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAP 460 (708)
T ss_pred cccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCc
Confidence 2221100 000000000 122222444555555544 2334588999988887766555443 2
Q ss_pred ---------cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhc
Q 000169 1367 ---------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 1437 (1953)
Q Consensus 1367 ---------rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGR 1437 (1953)
.+.++.+|||+|.+++|..++..|.... ..+|+||+++++||||+.++.||-||+|..+..|++|+||
T Consensus 461 ~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~---~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGR 537 (708)
T KOG0348|consen 461 DSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR---RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGR 537 (708)
T ss_pred ccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc---ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhh
Confidence 1457999999999999999999998633 3489999999999999999999999999999999999999
Q ss_pred ccccCCcceEEEEEE
Q 000169 1438 AHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1438 AhRIGQKKeV~VyrL 1452 (1953)
+.|+|-+.+...|.+
T Consensus 538 TARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 538 TARAGEKGEALLFLL 552 (708)
T ss_pred hhhccCCCceEEEec
Confidence 999999998877655
No 68
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=4.4e-19 Score=214.79 Aligned_cols=313 Identities=21% Similarity=0.295 Sum_probs=209.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH-HHHHHHhC---------CCCCeEEEechH-HHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI-AYLMEFKG---------NYGPHLIIVPNA-VLVNWKSE 1068 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALI-a~Lle~kg---------~~GP~LIVVP~S-LL~QW~~E 1068 (1953)
...|+|+.++.-+.. +++.+.|..||+|||...+..| .++++... .....||++|++ |+.|-.+|
T Consensus 96 ~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred CCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 678999999876654 8888999999999999987754 45554322 235679999987 88899999
Q ss_pred HHHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCc---hhHH
Q 000169 1069 LHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR---ESVL 1141 (1953)
Q Consensus 1069 f~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~---~SKl 1141 (1953)
..++.. .+++++.+|..+.+... ......+||+|+|.+.+..- ...+..-...|+|||||.+|... .-.+
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~---~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQL---RFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhh---hhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccH
Confidence 999874 45665555555554433 23467899999999998754 23333345569999999998641 1111
Q ss_pred HHHhhhc-----ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000169 1142 ARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216 (1953)
Q Consensus 1142 sraLk~L-----~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~li 1216 (1953)
.+.+... ....-+++|||= . .
T Consensus 249 r~iv~~~~~~~~~~~qt~mFSAtf------------------------------p----~-------------------- 274 (482)
T KOG0335|consen 249 RKIVEQLGMPPKNNRQTLLFSATF------------------------------P----K-------------------- 274 (482)
T ss_pred HHHhcccCCCCccceeEEEEeccC------------------------------C----h--------------------
Confidence 1111111 111223333331 0 0
Q ss_pred HHHHHHHhhHHHHHH----HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHH
Q 000169 1217 IHRLHQILEPFMLRR----RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292 (1953)
Q Consensus 1217 I~RLhklLrPFmLRR----lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~ 1292 (1953)
.+..+...|+.-- ....|..........+++|.
T Consensus 275 --~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~----------------------------------------- 311 (482)
T KOG0335|consen 275 --EIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN----------------------------------------- 311 (482)
T ss_pred --hhhhhHHHHhhccceEEEEeeeccccccceeEeeeec-----------------------------------------
Confidence 0111111111100 00000000111111222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH-------hcCCeeEEeechhHHHHHHHHHHH
Q 000169 1293 TLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-------RTGHRVLLFSTMTKLLDILEEYLQ 1365 (1953)
Q Consensus 1293 sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk-------atGhKVLIFSQft~~LDILed~L~ 1365 (1953)
...|...|..+|.... ...++++||+.....++.|+.+|.
T Consensus 312 ---------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 312 ---------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred ---------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 1122222333333221 112589999999999999999999
Q ss_pred HcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1366 ~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
..++++.-|||.-+..+|.+.|+.|+.+... +|++|.++.+|||++.+++||+||.|-+-..|++||||++|.|+..
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G 435 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGG 435 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCc
Confidence 9999999999999999999999999987666 7999999999999999999999999999999999999999999998
Q ss_pred eEEEEEE
Q 000169 1446 EVKVIYM 1452 (1953)
Q Consensus 1446 eV~VyrL 1452 (1953)
-++.|.-
T Consensus 436 ~atsf~n 442 (482)
T KOG0335|consen 436 RATSFFN 442 (482)
T ss_pred eeEEEec
Confidence 8877753
No 69
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.4e-19 Score=200.15 Aligned_cols=306 Identities=19% Similarity=0.229 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC--CCeEE
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP--SVSCI 1079 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaP--slkVv 1079 (1953)
..|..++-.++. +.+.|.-...|+|||.+...-++.......+.-.+||+.|+.- ..|-..-+..... ++.+.
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 357788877776 8888999999999997753222222222223346899999984 4555555555543 46777
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCc--hhHHHHHhhhcc-cceeE
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQRRL 1154 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a~~RL 1154 (1953)
...|+...-..+.. .....+||..|++++.+- +..|.-...+++|+|||+.|.|. ..+++..++.++ ....+
T Consensus 128 acigg~n~gedikk---ld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv 204 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKK---LDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVV 204 (400)
T ss_pred EEecCCccchhhhh---hcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEE
Confidence 77776654333221 124568999999988654 45566678899999999999764 456777777776 45688
Q ss_pred EecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 000169 1155 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234 (1953)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKk 1234 (1953)
++|||- ..|+..+.++.
T Consensus 205 ~~SATl----p~eilemt~kf----------------------------------------------------------- 221 (400)
T KOG0328|consen 205 LVSATL----PHEILEMTEKF----------------------------------------------------------- 221 (400)
T ss_pred EEeccC----cHHHHHHHHHh-----------------------------------------------------------
Confidence 899984 22333222222
Q ss_pred hhhcCCCCceEEEEEe-ccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000169 1235 DVEGSLPPKVSIVLRC-RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313 (1953)
Q Consensus 1235 DVekdLPpKvE~vV~c-~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p 1313 (1953)
.|+.+...++- .++.+-.+.|- +.++.
T Consensus 222 -----mtdpvrilvkrdeltlEgIKqf~-------v~ve~---------------------------------------- 249 (400)
T KOG0328|consen 222 -----MTDPVRILVKRDELTLEGIKQFF-------VAVEK---------------------------------------- 249 (400)
T ss_pred -----cCCceeEEEecCCCchhhhhhhe-------eeech----------------------------------------
Confidence 12222222111 11111000000 00000
Q ss_pred CccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcC
Q 000169 1314 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (1953)
Q Consensus 1314 ~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ 1393 (1953)
..=|+..|..+...| +=...+|||+.....|+|.+.++..++.+..+||.++.++|.+++++|+++
T Consensus 250 ------------EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg 315 (400)
T KOG0328|consen 250 ------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG 315 (400)
T ss_pred ------------hhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC
Confidence 001334444443333 234689999999999999999999999999999999999999999999998
Q ss_pred CCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1394 ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
.+. +|++|++-++|+|+|.++.||+||+|-|+..|++||||.+|.|.+.-+
T Consensus 316 ~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 316 KSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred Cce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE
Confidence 887 899999999999999999999999999999999999999999987654
No 70
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.80 E-value=3.5e-18 Score=219.91 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=86.4
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH-----HHHHHhhc----CC----CCccEEEEeccccc
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-----SAIVDFNS----HD----SDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq-----eaIerFNs----~d----s~ifVfLLSTrAGG 1408 (1953)
..+.++||||+.+..++.|.+.|...++ ..|||.++..+|. .++++|.. +. .+-..|||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4568899999999999999999998887 8899999999999 78999975 21 01135799999999
Q ss_pred cccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1409 eGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
+|||+.. ++||+++.|+ ..|+||+||++|.|....+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 9999986 9999988775 7999999999999986544
No 71
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=4.6e-18 Score=213.36 Aligned_cols=356 Identities=17% Similarity=0.214 Sum_probs=227.4
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHCC
Q 000169 997 RAGTLRDYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWLP 1074 (1953)
Q Consensus 997 ~ggkLRPYQleGL~WLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~KwaP 1074 (1953)
....+|+||..+++.+++.+.++. ..+|++.||+|||.+||++|..|+. .+..+++|+++- ++|+.|-..+|..+.|
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhCC
Confidence 345799999999999999877554 4789999999999999999999986 667789999997 5688998889999999
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh-------hcccccCccEEEcccccccCCchhHHHHHhhh
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-------SKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~-------s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~ 1147 (1953)
....+....... ....+.|+|+||.++.... ..+..-.||+||||||||- ....++.+..
T Consensus 241 ~~~~~n~i~~~~----------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~d 307 (875)
T COG4096 241 FGTKMNKIEDKK----------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSILD 307 (875)
T ss_pred Cccceeeeeccc----------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHHHH
Confidence 876655433221 1226799999999997642 2344557999999999993 3445556666
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
|-...+++|||||-..--.+-+.+|+ +.|...+. |...+
T Consensus 308 YFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Ys---------------------leeAV--- 346 (875)
T COG4096 308 YFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAYS---------------------LEEAV--- 346 (875)
T ss_pred HHHHHHHhhccCcccccccccccccC-----------------CCcceeec---------------------HHHHh---
Confidence 66677888899996532111111111 33332221 00000
Q ss_pred HHHHHHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1228 MLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
+..++ .|.+. ...+.+.... +..+...+.....+. ..+
T Consensus 347 -----~DGfL--vpy~vi~i~~~~~~~G--------------~~~~~~serek~~g~--------------------~i~ 385 (875)
T COG4096 347 -----EDGFL--VPYKVIRIDTDFDLDG--------------WKPDAGSEREKLQGE--------------------AID 385 (875)
T ss_pred -----hcccc--CCCCceEEeeeccccC--------------cCcCccchhhhhhcc--------------------ccC
Confidence 01111 22222 1122221110 000000000000000 000
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhc---C---CeeEEeechhHHHHHHHHHHHHc-----CCeEEeec
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---G---HRVLLFSTMTKLLDILEEYLQWR-----QLVYRRID 1375 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkat---G---hKVLIFSQft~~LDILed~L~~r-----GikylRLD 1375 (1953)
.+ ...++....+..+..-...+.+++.|...... | .|.||||....+++.|...|... |--++.|+
T Consensus 386 ~d---d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 386 ED---DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred cc---cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00 00001111111112223344555555554433 3 48999999999999999999765 22356788
Q ss_pred CCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc-------CCcce-E
Q 000169 1376 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI-------GQKRE-V 1447 (1953)
Q Consensus 1376 GsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI-------GQKKe-V 1447 (1953)
|... +=+..|+.|-. +..+..|.+|.+.+.+|+|.+.|-.+||+-.-.+-..+.|.+||+-|+ ||.|+ .
T Consensus 463 ~d~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F 539 (875)
T COG4096 463 GDAE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFF 539 (875)
T ss_pred ccch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeE
Confidence 8874 44567888876 567777899999999999999999999999999999999999999997 34444 5
Q ss_pred EEEEEeh
Q 000169 1448 KVIYMEA 1454 (1953)
Q Consensus 1448 ~VyrLvT 1454 (1953)
.|+.++-
T Consensus 540 ~ifDf~~ 546 (875)
T COG4096 540 TIFDFVD 546 (875)
T ss_pred EEEEhhh
Confidence 7777754
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.7e-16 Score=200.85 Aligned_cols=413 Identities=17% Similarity=0.189 Sum_probs=227.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-Q---W~~Ef~Kwa 1073 (1953)
|...+|-|+.|+--++. |.|.-..||.|||++++..+..... ....++||+|+..|. + |...|.+++
T Consensus 101 g~~p~~VQ~~~~~~ll~------G~Iae~~TGeGKTla~~lp~~~~al---~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 101 GQRHFDVQLMGGLALLS------GRLAEMQTGEGKTLTATLPAGTAAL---AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCCChHHHHHHHHHhC------CCeeeeeCCCCcHHHHHHHHHHHhh---cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 44566778888876664 3388899999999998766554332 234789999998554 3 556665554
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHH-----Hhhhh-----------------------cccccCccE
Q 000169 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-----MYDRS-----------------------KLSKVDWKY 1125 (1953)
Q Consensus 1074 PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL-----~kd~s-----------------------~L~kikWd~ 1125 (1953)
++++.++.|...... .......+|+++|-..| +.... .+....+.+
T Consensus 172 -Glsv~~i~gg~~~~~-----r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 172 -GLTVGCVVEDQSPDE-----RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred -CCEEEEEeCCCCHHH-----HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 467766666533211 11134569999996544 22211 111236889
Q ss_pred EEcccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHH----hhhcccc-cC----------C--h-HHHH
Q 000169 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL----NLLLPEV-FD----------N--R-KAFH 1187 (1953)
Q Consensus 1126 VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLL----nFLlP~i-F~----------S--~-k~F~ 1187 (1953)
+||||++-+. +.. +..-|++||.+-.....++|... .-|..+. |. + . ....
T Consensus 246 aIvDEvDSiL---------iDe--artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e 314 (656)
T PRK12898 246 AIVDEADSVL---------IDE--ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIA 314 (656)
T ss_pred eEeeccccee---------ecc--CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHH
Confidence 9999999874 122 33458888855333223444333 3232221 10 0 0 0000
Q ss_pred hhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH-HHHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHH
Q 000169 1188 DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAI 1259 (1953)
Q Consensus 1188 e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP-FmLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~L 1259 (1953)
+.|.. +. ..|... ....+.+...|+- +++.+-+.-+ +.+....+| ...| .+..-+
T Consensus 315 ~~~~~-l~---------~~~~~~---~~~~~~i~~Al~A~~l~~~d~dYi---V~d~~V~iv-D~~TGR~~~gr~w~~GL 377 (656)
T PRK12898 315 ELAES-LP---------PAWRGA---VRREELVRQALSALHLFRRDEHYI---VRDGKVVIV-DEFTGRVMPDRSWEDGL 377 (656)
T ss_pred HHhCc-ch---------hhcccc---hHHHHHHHHHHHHHHHHhcCCceE---EECCeEEEE-ECCCCeECCCCCcChHH
Confidence 11100 00 000000 0011222223322 2222222211 112222222 2222 244445
Q ss_pred HHHHHHccCcccCchhHHh------hhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccc----chh-hhhhccc
Q 000169 1260 YDWIKATGTLRVDPEDEKR------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL----SKD-FLVKSCG 1328 (1953)
Q Consensus 1260 Yk~I~~~~~l~ld~~~ek~------~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dl----s~d-~Li~~SG 1328 (1953)
.+.+...-.+.+....... ..+............+......|.++.+-..+..|..... ... .......
T Consensus 378 hQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~ 457 (656)
T PRK12898 378 HQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAA 457 (656)
T ss_pred HHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHH
Confidence 5555443322222211100 0000000000001111122344555544333322221110 011 1233456
Q ss_pred HHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1329 KLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
|...|..++..+...+..|||||......+.|...|...|+++..|+|... +|+..+..|....+. ++|+|+++|
T Consensus 458 K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATdmAg 532 (656)
T PRK12898 458 KWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATNMAG 532 (656)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEccchh
Confidence 888888888887777889999999999999999999999999999999864 556666666543444 899999999
Q ss_pred cccCCc---cCC-----eEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhh
Q 000169 1409 RGLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1460 (1953)
Q Consensus 1409 eGLNLQ---aAD-----tVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~ 1460 (1953)
+|+|+. .+. +||+||.|-|...|.|++||++|.|....+..| ++.++.++
T Consensus 533 RGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--is~eD~l~ 590 (656)
T PRK12898 533 RGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--LSLEDDLL 590 (656)
T ss_pred cccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--echhHHHH
Confidence 999998 444 999999999999999999999999988776544 34444443
No 73
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.79 E-value=3e-17 Score=210.95 Aligned_cols=374 Identities=15% Similarity=0.127 Sum_probs=206.4
Q ss_pred CCCcHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
.-.|+||..+|+.++....+ ..+|||.+.+|+|||++++.++..++. .....++|||||.. |..||..+|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 35789999999999887643 457999999999999999998888774 34456899999965 89999999999
Q ss_pred HCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh-hccccc----CccEEEcccccccCCchhHHHHHhh
Q 000169 1072 WLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-SKLSKV----DWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1072 waPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~-s~L~ki----kWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
+.+... .-.++... + ..........|+|||++.+.+.. ..+... ...+||+|||||.. ...+...+.
T Consensus 316 ~~~~~~--~~~~s~~~---L-~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~--~~~~~~~l~ 387 (667)
T TIGR00348 316 LQKDCA--ERIESIAE---L-KRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ--YGELAKNLK 387 (667)
T ss_pred hCCCCC--cccCCHHH---H-HHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc--chHHHHHHH
Confidence 875311 11122111 1 11223345789999999997521 111111 22389999999964 234445554
Q ss_pred -hcccceeEEecccCCCCCHHHHHHHHhhhcccc---cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1147 -RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV---FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1147 -~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~i---F~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
.++..++|+|||||+...-.+-+..+....-.+ +.-.+...+-+..|+........ ..+.. ..+.
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~---~~~~~-------~~l~- 456 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPE---DHLDR-------KKLD- 456 (667)
T ss_pred hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchh---hccCh-------HHHH-
Confidence 567789999999998642111111111100000 01111122222222221110000 00000 0000
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
..+..........+... ....+......+.
T Consensus 457 -----------------------------------~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~ 486 (667)
T TIGR00348 457 -----------------------------------AFFDEIFELLPERIREI---------------TKESLKEKLQKTK 486 (667)
T ss_pred -----------------------------------HHHHHHHHhhhccccHH---------------HHHHHHHHHHHHH
Confidence 00000000000000000 0000111111111
Q ss_pred HhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-----CCeEEeecCC
Q 000169 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGT 1377 (1953)
Q Consensus 1303 KiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-----GikylRLDGs 1377 (1953)
.+..+|. .+....+ .++..........+.|.+|||..+..+..+.+.|... +...+.++|+
T Consensus 487 ~~~~~~~-------------~~~~ia~-~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~ 552 (667)
T TIGR00348 487 KILFNED-------------RLESIAK-DIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGK 552 (667)
T ss_pred hhhcChH-------------HHHHHHH-HHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCC
Confidence 1111110 0000000 0111111111223578999999999888887777543 3455667776
Q ss_pred CCHH---------------------HHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhh
Q 000169 1378 TSLE---------------------DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1436 (1953)
Q Consensus 1378 Ts~e---------------------eRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiG 1436 (1953)
...+ ....++++|..+ .++. |||.++...+|+|.+.++++++.-|--+ +.++|++|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~ 629 (667)
T TIGR00348 553 ESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIA 629 (667)
T ss_pred ccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHH
Confidence 5433 224789999863 3344 5677799999999999999999988776 45899999
Q ss_pred ccccc-CC-cceEEEEEEehhhhhh
Q 000169 1437 RAHRI-GQ-KREVKVIYMEAVVDKI 1459 (1953)
Q Consensus 1437 RAhRI-GQ-KKeV~VyrLvTVEEkI 1459 (1953)
|+.|+ +- |....|+.++.+.+.+
T Consensus 630 R~nR~~~~~K~~g~IvDy~g~~~~l 654 (667)
T TIGR00348 630 RTNRIDGKDKTFGLIVDYRGLEKSL 654 (667)
T ss_pred HhccccCCCCCCEEEEECcChHHHH
Confidence 99995 43 4456888887654433
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.3e-16 Score=205.40 Aligned_cols=411 Identities=14% Similarity=0.173 Sum_probs=229.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHCCCC
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWLPSV 1076 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-Q---W~~Ef~KwaPsl 1076 (1953)
++||+...+..++- ..|.|....||.|||++++..+..... ....++||+|+..|. + |...+.+|+ ++
T Consensus 77 ~~p~~vQl~~~~~l----~~G~Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl 148 (790)
T PRK09200 77 MRPYDVQLIGALVL----HEGNIAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFL-GL 148 (790)
T ss_pred CCCchHHHHhHHHH----cCCceeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 45554444444443 234489999999999988665542221 234789999998554 3 666666665 57
Q ss_pred eEEEEecchh-hHhHHHHHHHhhccccEEEEeHHHH-----Hhhhh----cccccCccEEEcccccccCCchhHHHHHhh
Q 000169 1077 SCIYYVGAKD-QRSRLFSQEVAALKFNVLVTTYEFI-----MYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1077 kVvvy~Gs~d-eRk~l~~qei~~~~fdVVITTYEsL-----~kd~s----~L~kikWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
.+.++.|... ...+ ......+|+++|...+ +.... .+....+.++||||+|.|.= .
T Consensus 149 ~v~~i~g~~~~~~~r-----~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLi---------D 214 (790)
T PRK09200 149 TVGLNFSDIDDASEK-----KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILL---------D 214 (790)
T ss_pred eEEEEeCCCCcHHHH-----HHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEecccccee---------c
Confidence 7777766543 2111 1123579999997666 32211 12234689999999999841 1
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHhh----hcccc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhhH
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDWL 1208 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-F~----------S~---k~F~e~F~kPf~k~g~~~~~e~d~l 1208 (1953)
. +..-|++||.+-.. ..+|...+. |.++. |. +. ....+.|..+ ..|.
T Consensus 215 e--a~tpliisg~~~~~--~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~-----------~l~~ 279 (790)
T PRK09200 215 E--AQTPLIISGKPRVQ--SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGID-----------NLYS 279 (790)
T ss_pred c--CCCceeeeCCCccc--cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCc-----------cccC
Confidence 1 22247787754322 235544432 22210 10 00 0011111110 0000
Q ss_pred HHHHHHHHHHHHHHHhhH-HHHHHHHhhhhcCCCCceEEEEEe------ccCHHHHHHHHHHHHccCcccCchhHHhhhh
Q 000169 1209 ETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRC------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ 1281 (1953)
Q Consensus 1209 ~eEek~liI~RLhklLrP-FmLRRlKkDVekdLPpKvE~vV~c------~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~ 1281 (1953)
......++.+...|+. +++.+-+.-+. .+....+|.- +-+.+..-+.+.+...-.+.+..........
T Consensus 280 --~~~~~~~~~i~~Al~A~~~~~~d~dYiV---~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~I 354 (790)
T PRK09200 280 --LEHQVLYRHIILALRAHVLFKRDVDYIV---YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASI 354 (790)
T ss_pred --hhhhHHHHHHHHHHHHHHHhhcCCcEEE---ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhh
Confidence 0001112233333332 33333222111 1111111110 1112344444555443322222211100000
Q ss_pred cChhhHHHHHHHH-------HHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEE
Q 000169 1282 KNPIYQAKVYKTL-------NNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 1349 (1953)
Q Consensus 1282 kn~~~~ak~~~sL-------~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLI 1349 (1953)
....+ -+.|..| ...-..|.++-+-+.+..|.... ...........|+..|...+......+..|||
T Consensus 355 t~q~~-fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLI 433 (790)
T PRK09200 355 TIQNL-FRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLI 433 (790)
T ss_pred hHHHH-HHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 00000 0011111 11123456665555544333221 11122234457888888888877778999999
Q ss_pred eechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCC---ccCC-----eEEE
Q 000169 1350 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL---QSAD-----TVII 1421 (1953)
Q Consensus 1350 FSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNL---QaAD-----tVIi 1421 (1953)
||......+.|...|...|+++..|+|.+...++..+...|.. +. ++++|+.+|+|+|+ +.+. +||+
T Consensus 434 f~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIATdmAgRG~DI~l~~~V~~~GGL~VI~ 508 (790)
T PRK09200 434 GTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVATNMAGRGTDIKLGEGVHELGGLAVIG 508 (790)
T ss_pred EeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEccchhcCcCCCcccccccccCcEEEe
Confidence 9999999999999999999999999999988887777777653 23 79999999999999 5777 9999
Q ss_pred cCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1422 fDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
||.|-|+..|.|+.||++|.|....+..| ++.++.+..
T Consensus 509 ~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--is~eD~l~~ 546 (790)
T PRK09200 509 TERMESRRVDLQLRGRSGRQGDPGSSQFF--ISLEDDLLK 546 (790)
T ss_pred ccCCCCHHHHHHhhccccCCCCCeeEEEE--EcchHHHHH
Confidence 99999999999999999999998776543 455555554
No 75
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.8e-17 Score=206.63 Aligned_cols=307 Identities=19% Similarity=0.211 Sum_probs=225.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPslkV 1078 (1953)
..|+-|.++|..+++ +.+.|...+||.||++..-... ++ ..|.+|||.|. +|+.+..+.+.... +.+
T Consensus 17 ~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPA--ll----~~G~TLVVSPLiSLM~DQV~~l~~~G--i~A 84 (590)
T COG0514 17 SFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPA--LL----LEGLTLVVSPLISLMKDQVDQLEAAG--IRA 84 (590)
T ss_pred ccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHH--Hh----cCCCEEEECchHHHHHHHHHHHHHcC--cee
Confidence 688999999999887 7889999999999997653322 22 25799999996 58888888888753 555
Q ss_pred EEEec--chhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCc-------hhHHHHHhhh
Q 000169 1079 IYYVG--AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR-------ESVLARDLDR 1147 (1953)
Q Consensus 1079 vvy~G--s~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~-------~SKlsraLk~ 1147 (1953)
....+ +.+++..+.. ....+..+++..+++.+... ...|...+..+++|||||.+-.. ...+......
T Consensus 85 ~~lnS~l~~~e~~~v~~-~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~ 163 (590)
T COG0514 85 AYLNSTLSREERQQVLN-QLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG 163 (590)
T ss_pred ehhhcccCHHHHHHHHH-HHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh
Confidence 55544 3455555443 45567899999999999865 45677889999999999988542 3344555556
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
|...-+++||||--.--..|+...|..-.+.+|- ..|..|--
T Consensus 164 ~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~------~sfdRpNi-------------------------------- 205 (590)
T COG0514 164 LPNPPVLALTATATPRVRDDIREQLGLQDANIFR------GSFDRPNL-------------------------------- 205 (590)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEE------ecCCCchh--------------------------------
Confidence 6666799999997666666666666654443321 11111100
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
.|.....
T Consensus 206 -------------------------------~~~v~~~------------------------------------------ 212 (590)
T COG0514 206 -------------------------------ALKVVEK------------------------------------------ 212 (590)
T ss_pred -------------------------------hhhhhhc------------------------------------------
Confidence 0000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
..++..++ -|.......+...||||..+...+.+..+|...|+....+||++..++|..+-
T Consensus 213 ------------------~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q 273 (590)
T COG0514 213 ------------------GEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQ 273 (590)
T ss_pred ------------------ccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHH
Confidence 00000111 01111123445589999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
++|..++.. ++++|.|.|.|||-+++.+|||||+|-+...|.|-+|||+|-|...++.+++-
T Consensus 274 ~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~ 335 (590)
T COG0514 274 QAFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYS 335 (590)
T ss_pred HHHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeec
Confidence 999986666 89999999999999999999999999999999999999999999988877663
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.76 E-value=5.6e-17 Score=217.43 Aligned_cols=295 Identities=16% Similarity=0.202 Sum_probs=188.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs- 1075 (1953)
|.+++++|..++..++. +.+.++..+||+|||..++.++.++. .....+|||||+. |+.||...|.+++..
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 45899999998877764 77889999999999964443333332 2346799999987 788999999998754
Q ss_pred -CeEEEEecch----hhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH----------
Q 000169 1076 -VSCIYYVGAK----DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV---------- 1140 (1953)
Q Consensus 1076 -lkVvvy~Gs~----deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK---------- 1140 (1953)
+.+.+..|.. ..+.... ..+..+.++|+|+|++++.++...+...++++|||||||++....-.
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~-~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF 229 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFL-ERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGF 229 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHH-HHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCC
Confidence 3443333322 2222221 12345679999999999998877777677999999999998532111
Q ss_pred ----HHHHhhhcc-------------------------cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhc
Q 000169 1141 ----LARDLDRYR-------------------------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS 1191 (1953)
Q Consensus 1141 ----lsraLk~L~-------------------------a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~ 1191 (1953)
+..++..++ ....+++|||........
T Consensus 230 ~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~------------------------ 285 (1176)
T PRK09401 230 SEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV------------------------ 285 (1176)
T ss_pred CHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH------------------------
Confidence 111111111 112333344432110000
Q ss_pred CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCccc
Q 000169 1192 QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271 (1953)
Q Consensus 1192 kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~l 1271 (1953)
.+++ ++.. +.+
T Consensus 286 -----------------------------------~l~~----~ll~---------~~v--------------------- 296 (1176)
T PRK09401 286 -----------------------------------KLFR----ELLG---------FEV--------------------- 296 (1176)
T ss_pred -----------------------------------HHhh----ccce---------EEe---------------------
Confidence 0000 0000 000
Q ss_pred CchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEee
Q 000169 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFS 1351 (1953)
Q Consensus 1272 d~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFS 1351 (1953)
... . ..++.+. | ..+....|...|..++..+ +..+||||
T Consensus 297 ~~~--------~---------------~~~rnI~-~--------------~yi~~~~k~~~L~~ll~~l---~~~~LIFv 335 (1176)
T PRK09401 297 GSP--------V---------------FYLRNIV-D--------------SYIVDEDSVEKLVELVKRL---GDGGLIFV 335 (1176)
T ss_pred cCc--------c---------------cccCCce-E--------------EEEEcccHHHHHHHHHHhc---CCCEEEEE
Confidence 000 0 0000000 0 0000013555666666543 56899999
Q ss_pred chhHH---HHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe----ccccccccCCcc-CCeEEEcC
Q 000169 1352 TMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYD 1423 (1953)
Q Consensus 1352 Qft~~---LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQa-ADtVIifD 1423 (1953)
+.... ++.|.++|...|+++..+||++ .+.+++|.+++.+ | |++ |+++++|||++. +.+|||||
T Consensus 336 ~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~--V-LVatas~tdv~aRGIDiP~~IryVI~y~ 407 (1176)
T PRK09401 336 PSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD--V-LVGVASYYGVLVRGIDLPERIRYAIFYG 407 (1176)
T ss_pred ecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC--E-EEEecCCCCceeecCCCCcceeEEEEeC
Confidence 98766 9999999999999999999999 2346999976554 4 555 799999999999 89999999
Q ss_pred CCC------CchhHHhhhhcccccC
Q 000169 1424 PDP------NPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1424 ppW------NP~~d~QAiGRAhRIG 1442 (1953)
.|- ....+.++++|+..+-
T Consensus 408 vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 408 VPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCCEEEeccccccCHHHHHHHHhhc
Confidence 998 7778899999997554
No 77
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.76 E-value=7.4e-17 Score=217.40 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=85.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcC---------------------------------CeEEeecCCCCHHHHHHHHHH
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---------------------------------LVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rG---------------------------------ikylRLDGsTs~eeRqeaIer 1389 (1953)
.+.++||||+.+..++.|...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998887531 124567899999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI 1441 (1953)
|+++... +|++|.++.+|||+..+|+||+|++|.+...|+||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9976554 799999999999999999999999999999999999999985
No 78
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.76 E-value=2.4e-18 Score=199.56 Aligned_cols=310 Identities=25% Similarity=0.337 Sum_probs=207.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH-HHHHHH------hCCCCCe-EEEechHHHHHHHHHH-H
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI-AYLMEF------KGNYGPH-LIIVPNAVLVNWKSEL-H 1070 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALI-a~Lle~------kg~~GP~-LIVVP~SLL~QW~~Ef-~ 1070 (1953)
...|.|..|+.-+++ ++.-|=-.-+|+|||+++...+ ...++. ....||+ |||||..-+.....++ .
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 345678888876665 5544444459999998865533 322222 2344665 9999998555444333 2
Q ss_pred HH--------CCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCch--
Q 000169 1071 KW--------LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRE-- 1138 (1953)
Q Consensus 1071 Kw--------aPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~-- 1138 (1953)
.+ +|.++.....|+-..+..+ .......++||.|++.++.- +..+.-.-..|+.+|||+||-...
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql---~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE 344 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQL---DVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE 344 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHH---HHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch
Confidence 22 3778888888887777654 45567889999999999754 233333456799999999996532
Q ss_pred hHHHHHhhhcccce-eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHh-hhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000169 1139 SVLARDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHD-WFSQPFQKEGPTHNADDDWLETEKKVII 1216 (1953)
Q Consensus 1139 SKlsraLk~L~a~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e-~F~kPf~k~g~~~~~e~d~l~eEek~li 1216 (1953)
.-+...+..|++.+ -|++|||--. .+ ..|.. -+.+|+
T Consensus 345 ddir~iF~~FK~QRQTLLFSATMP~----KI---------------Q~FAkSALVKPv---------------------- 383 (610)
T KOG0341|consen 345 DDIRTIFSFFKGQRQTLLFSATMPK----KI---------------QNFAKSALVKPV---------------------- 383 (610)
T ss_pred hhHHHHHHHHhhhhheeeeeccccH----HH---------------HHHHHhhcccce----------------------
Confidence 23333444555544 5777777300 00 00000 000111
Q ss_pred HHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHH
Q 000169 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 1296 (1953)
Q Consensus 1217 I~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~n 1296 (1953)
+|.+- . . + ..-++
T Consensus 384 ------------------------------tvNVG----------------R---------A-----------G-AAsld 396 (610)
T KOG0341|consen 384 ------------------------------TVNVG----------------R---------A-----------G-AASLD 396 (610)
T ss_pred ------------------------------EEecc----------------c---------c-----------c-ccchh
Confidence 00000 0 0 0 00000
Q ss_pred HHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecC
Q 000169 1297 RCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1376 (1953)
Q Consensus 1297 ilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDG 1376 (1953)
.+..+ ..+..-.|+.. +|.-|..+.-.|||||.-..-.|.|.+||-..|+..+.|||
T Consensus 397 ViQev--------------------EyVkqEaKiVy---lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHG 453 (610)
T KOG0341|consen 397 VIQEV--------------------EYVKQEAKIVY---LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHG 453 (610)
T ss_pred HHHHH--------------------HHHHhhhhhhh---HHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeec
Confidence 11111 01122234333 34445568889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1377 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1377 sTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+-.+++|...|+.|+.+..+ +|++|++++-|||+++..+||+||.|-.-.+|++||||++|-|.+.-.+.|
T Consensus 454 GKDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 454 GKDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred CcchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeee
Confidence 99999999999999987777 899999999999999999999999999999999999999999988765544
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.76 E-value=4.7e-17 Score=206.99 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=122.8
Q ss_pred HHHHHHhcCCCCCCCCCccccc----hhhh-hhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEE
Q 000169 1298 CMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (1953)
Q Consensus 1298 lmqLRKiCNHP~L~~p~l~dls----~d~L-i~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikyl 1372 (1953)
...|+++-+-+.+..|...... .+.+ .....|+..+...+.++...|..|||||......+.|...|...|+++.
T Consensus 354 ~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~ 433 (745)
T TIGR00963 354 EEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHN 433 (745)
T ss_pred HHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 3467777666655444322111 1112 2234678778777777788999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc-------CCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS-------ADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1373 RLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa-------ADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
.|+|. ..+|+..|..|....+. ++|+|+.+|+|+|+.. ..+||+++.|-|...|.|+.||++|.|...
T Consensus 434 ~Lna~--q~~rEa~ii~~ag~~g~---VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G 508 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAGRKGA---VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPG 508 (745)
T ss_pred EeeCC--hHHHHHHHHHhcCCCce---EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCc
Confidence 99998 67999999999865544 8999999999999988 669999999999999999999999999998
Q ss_pred eEEEEEEehhhhhhh
Q 000169 1446 EVKVIYMEAVVDKIS 1460 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~ 1460 (1953)
.+..|. +.++.++
T Consensus 509 ~s~~~l--s~eD~l~ 521 (745)
T TIGR00963 509 SSRFFL--SLEDNLM 521 (745)
T ss_pred ceEEEE--eccHHHH
Confidence 765543 3344443
No 80
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.74 E-value=1.3e-17 Score=202.32 Aligned_cols=313 Identities=19% Similarity=0.267 Sum_probs=216.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---CC
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---SV 1076 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP---sl 1076 (1953)
..+.|..+|..... +..-|+-.-.|+|||++...+...-+......-..|||+|+. +..|....|.+.+| ++
T Consensus 48 ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 34678888876655 666789999999999887555554444344445679999988 55677777888887 58
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchh---HHHHHhhhccc-
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRC- 1150 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L~a- 1150 (1953)
+|.+|.|+.+.... ..+....+|+|.|++++... ...|..-+.+++|+|||+.+....+ .+...+..+..
T Consensus 124 ~csvfIGGT~~~~d----~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~ 199 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLD----LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQI 199 (980)
T ss_pred ceEEEecCchhhhh----hhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchh
Confidence 89999887765432 23445677999999998754 3556666889999999999975444 34555666654
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh-HHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFML 1229 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr-PFmL 1229 (1953)
+..++.|||=-+| |.+ +|.++++ |.++
T Consensus 200 rQv~a~SATYp~n-Ldn---------------------------------------------------~Lsk~mrdp~lV 227 (980)
T KOG4284|consen 200 RQVAAFSATYPRN-LDN---------------------------------------------------LLSKFMRDPALV 227 (980)
T ss_pred heeeEEeccCchh-HHH---------------------------------------------------HHHHHhccccee
Confidence 4578889884222 111 1222222 2222
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
|--..|+. -+.-+...+..|.....- . .|
T Consensus 228 r~n~~d~~-L~GikQyv~~~~s~nnsv-----------------------------------e-----em---------- 256 (980)
T KOG4284|consen 228 RFNADDVQ-LFGIKQYVVAKCSPNNSV-----------------------------------E-----EM---------- 256 (980)
T ss_pred ecccCCce-eechhheeeeccCCcchH-----------------------------------H-----HH----------
Confidence 21112211 011111111122100000 0 00
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIer 1389 (1953)
--|++.|-.++..+ .-...||||....-++-|..+|...|+.+..|.|.|.+.+|..+++.
T Consensus 257 -----------------rlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 257 -----------------RLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred -----------------HHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHH
Confidence 11455555555544 12357999999999999999999999999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcce
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
++.-... +|+||+..++|||-..++.||++|+|-|-..|.+|||||+|.|-..-
T Consensus 318 lr~f~~r---ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 318 LRAFRVR---ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred hhhceEE---EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 9863322 79999999999999999999999999999999999999999997654
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.73 E-value=5.8e-16 Score=193.04 Aligned_cols=308 Identities=18% Similarity=0.266 Sum_probs=207.3
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP- 1074 (1953)
.+|...|..++.-+..=... .-+-+|--++|+|||++++..+...++ ....+.+.+|+. |..|....|.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 36778999999877653332 234588889999999998776666654 234689999998 55778999999997
Q ss_pred -CCeEEEEecchh--hHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhh-hcc-
Q 000169 1075 -SVSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR- 1149 (1953)
Q Consensus 1075 -slkVvvy~Gs~d--eRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk-~L~- 1149 (1953)
++.|....|+-. .|+.+ ...+..+..+|||.|+..+..... -.+..+|||||-||+.- .....|. .-.
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~-l~~l~~G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFGV---~QR~~L~~KG~~ 410 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEI-LEQLASGEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFGV---HQRLALREKGEQ 410 (677)
T ss_pred cCCeEEEeecccchhHHHHH-HHHHhCCCCCEEEEcchhhhccee---ecceeEEEEeccccccH---HHHHHHHHhCCC
Confidence 577777777643 33333 335677889999999988865433 24678999999999852 2222233 223
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
..+.|.||||||..++.= ..|++.+
T Consensus 411 ~Ph~LvMTATPIPRTLAl----------t~fgDld--------------------------------------------- 435 (677)
T COG1200 411 NPHVLVMTATPIPRTLAL----------TAFGDLD--------------------------------------------- 435 (677)
T ss_pred CCcEEEEeCCCchHHHHH----------HHhcccc---------------------------------------------
Confidence 579999999999887531 1111100
Q ss_pred HHHHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1230 RRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1230 RRlKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
-.+.++||+.. .+..+|-....-..+|.++.
T Consensus 436 ----vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~-------------------------------------------- 467 (677)
T COG1200 436 ----VSIIDELPPGRKPITTVVIPHERRPEVYERIR-------------------------------------------- 467 (677)
T ss_pred ----chhhccCCCCCCceEEEEeccccHHHHHHHHH--------------------------------------------
Confidence 01234677763 22222211122222333221
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhH--------HHHHHHHHHHH--cCCeEEeecCCC
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQW--RQLVYRRIDGTT 1378 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~--------~LDILed~L~~--rGikylRLDGsT 1378 (1953)
.++ ..|+++.+.|.-.+ .+..+...|.. -++++..+||.|
T Consensus 468 -----------------------------~ei-~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm 517 (677)
T COG1200 468 -----------------------------EEI-AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRM 517 (677)
T ss_pred -----------------------------HHH-HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCC
Confidence 111 13333333332221 12223333331 266788999999
Q ss_pred CHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+.+++.+++.+|+++..+ +|+||-+...|+|+++|+.+||+|.. +--++..|--||++|=+...-|..++-
T Consensus 518 ~~~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~ 589 (677)
T COG1200 518 KPAEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYK 589 (677)
T ss_pred ChHHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeC
Confidence 999999999999987777 89999999999999999999999998 789999999999999877777755543
No 82
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=7.7e-18 Score=192.48 Aligned_cols=317 Identities=20% Similarity=0.233 Sum_probs=216.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH----HHHHHHHHHHHCCCCe
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV----LVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL----L~QW~~Ef~KwaPslk 1077 (1953)
.|.|.+++.-.+. +.+.+.-.-.|+|||...+-.++..+..+...-..+|+||..- .+|-+.++.+++. ++
T Consensus 109 SPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~ 183 (459)
T KOG0326|consen 109 SPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG-IK 183 (459)
T ss_pred CCccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC-eE
Confidence 3556666655553 3333333678999998877666665554445556899999763 3567788888876 88
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCchh--HHHHHhhhcc-cce
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR-CQR 1152 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~S--KlsraLk~L~-a~~ 1152 (1953)
+.+..|+...|..+.. .....+++|.|++.+..... .-.-.+..++|+|||+.+..... .+.+.+.-++ .+.
T Consensus 184 vmvttGGT~lrDDI~R---l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQ 260 (459)
T KOG0326|consen 184 VMVTTGGTSLRDDIMR---LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQ 260 (459)
T ss_pred EEEecCCcccccceee---ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccce
Confidence 8888888877765532 24567999999999976532 22223678999999999976443 3334444443 344
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
.++.|||= . -..+.|.. |.+
T Consensus 261 illySATF-P------------------~tVk~Fm~-----------------------------------------~~l 280 (459)
T KOG0326|consen 261 ILLYSATF-P------------------LTVKGFMD-----------------------------------------RHL 280 (459)
T ss_pred eeEEeccc-c------------------hhHHHHHH-----------------------------------------Hhc
Confidence 67778771 0 01222322 222
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000169 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~ 1312 (1953)
++-.+ +. +.+.+.-.+. .+ +|
T Consensus 281 ~kPy~--------IN-----------LM~eLtl~Gv------------------------------tQ----------yY 301 (459)
T KOG0326|consen 281 KKPYE--------IN-----------LMEELTLKGV------------------------------TQ----------YY 301 (459)
T ss_pred cCcce--------ee-----------hhhhhhhcch------------------------------hh----------he
Confidence 21110 00 0000000000 00 00
Q ss_pred CCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhc
Q 000169 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (1953)
Q Consensus 1313 p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs 1392 (1953)
..+..+.|+-+|..++.+|. =...||||+.+...++|+..+...||.+..+|..|.++.|..++.+|+.
T Consensus 302 ---------afV~e~qKvhCLntLfskLq--INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 302 ---------AFVEERQKVHCLNTLFSKLQ--INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred ---------eeechhhhhhhHHHHHHHhc--ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc
Confidence 01233557777888887764 3468999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1393 ~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
+... .|++|+...+|||+|++++||+||.|-|+..|++|+||.+|.|.-.- -+.|++.+++..-
T Consensus 371 G~cr---nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGl--AInLityedrf~L 434 (459)
T KOG0326|consen 371 GKCR---NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL--AINLITYEDRFNL 434 (459)
T ss_pred cccc---eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcce--EEEEEehhhhhhH
Confidence 5544 58899999999999999999999999999999999999999997654 3456666665543
No 83
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.72 E-value=1.5e-15 Score=194.33 Aligned_cols=325 Identities=17% Similarity=0.202 Sum_probs=193.3
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH---------HHHH---hCCCCCeEEEec
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY---------LMEF---KGNYGPHLIIVP 1058 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~---------Lle~---kg~~GP~LIVVP 1058 (1953)
--|.-|....|++.|...=..++..+..+...|+..+||+|||.++=-++.+ .++. ....+++||++|
T Consensus 151 ~n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~P 230 (675)
T PHA02653 151 GNPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLP 230 (675)
T ss_pred CCCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECc
Confidence 3444555568898888888777777777899999999999999875322221 1110 223458999999
Q ss_pred hH-HHHHHHHHHHHHC-----CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEccccc
Q 000169 1059 NA-VLVNWKSELHKWL-----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1059 ~S-LL~QW~~Ef~Kwa-----PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAH 1132 (1953)
.. ++.+...++.+.. ++..+.+..|+.... .. .......+++|+|..... .. -.++++|||||||
T Consensus 231 rreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~--~t~~k~~~Ilv~T~~L~l---~~--L~~v~~VVIDEaH 301 (675)
T PHA02653 231 RVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LI--NTNPKPYGLVFSTHKLTL---NK--LFDYGTVIIDEVH 301 (675)
T ss_pred HHHHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hh--hcccCCCCEEEEeCcccc---cc--cccCCEEEccccc
Confidence 87 5667777776533 345555555554321 10 011225689999854211 11 2368899999999
Q ss_pred ccCCchhHHHHHhhhccc--ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000169 1133 RMKDRESVLARDLDRYRC--QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (1953)
Q Consensus 1133 rLKN~~SKlsraLk~L~a--~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~e 1210 (1953)
.+-.....+...+..... +..+++|||.-. +... |..+|..|..-.
T Consensus 302 Er~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~------------------l~~~~~~p~~I~------------- 349 (675)
T PHA02653 302 EHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDR------------------IKEFFPNPAFVH------------- 349 (675)
T ss_pred cCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHH------------------HHHHhcCCcEEE-------------
Confidence 986544444444433321 358999999721 1222 222221110000
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHH
Q 000169 1211 EKKVIIIHRLHQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289 (1953)
Q Consensus 1211 Eek~liI~RLhklLrPFmLRRlKkDVek-dLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak 1289 (1953)
+.. .+.+.....+.....+.+...|- .
T Consensus 350 -------------------------I~grt~~pV~~~yi~~~~~~~~~~~y~--~------------------------- 377 (675)
T PHA02653 350 -------------------------IPGGTLFPISEVYVKNKYNPKNKRAYI--E------------------------- 377 (675)
T ss_pred -------------------------eCCCcCCCeEEEEeecCcccccchhhh--H-------------------------
Confidence 000 00111111111110000000000 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHc-
Q 000169 1290 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWR- 1367 (1953)
Q Consensus 1290 ~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~r- 1367 (1953)
..|..++ .++..+ ...+..+|||+.....++.+.+.|...
T Consensus 378 -------------------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~ 419 (675)
T PHA02653 378 -------------------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL 419 (675)
T ss_pred -------------------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc
Confidence 0011111 111111 124568999999999999999999987
Q ss_pred -CCeEEeecCCCCHHHHHHHHHHhh-cCCCCccEEEEeccccccccCCccCCeEEEcC---CC---------CCchhHHh
Q 000169 1368 -QLVYRRIDGTTSLEDRESAIVDFN-SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD---PD---------PNPKNEEQ 1433 (1953)
Q Consensus 1368 -GikylRLDGsTs~eeRqeaIerFN-s~ds~ifVfLLSTrAGGeGLNLQaADtVIifD---pp---------WNP~~d~Q 1433 (1953)
++.+..|||+++.. .+.+++|. .+ . +-+|++|+++++||+++++++||.++ .+ .+...+.|
T Consensus 420 ~~~~v~~LHG~Lsq~--eq~l~~ff~~g--k-~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~Q 494 (675)
T PHA02653 420 PIYDFYIIHGKVPNI--DEILEKVYSSK--N-PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQ 494 (675)
T ss_pred CCceEEeccCCcCHH--HHHHHHHhccC--c-eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHH
Confidence 79999999999864 56778874 32 2 34799999999999999999999997 22 26778999
Q ss_pred hhhcccccCCcceEEEEEEeh
Q 000169 1434 AVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1434 AiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.||++|. +.. .+|+|.+
T Consensus 495 RaGRAGR~-~~G--~c~rLyt 512 (675)
T PHA02653 495 RKGRVGRV-SPG--TYVYFYD 512 (675)
T ss_pred hccCcCCC-CCC--eEEEEEC
Confidence 99999998 333 3445544
No 84
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.2e-16 Score=186.65 Aligned_cols=310 Identities=19% Similarity=0.260 Sum_probs=203.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-----HHHHHhCC-CCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-----YLMEFKGN-YGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa-----~Lle~kg~-~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+..|.|-.+-.-++ .+...|-...||+|||+..+..-. ........ ...+||+.|+. |..+-.-|..++
T Consensus 242 KPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 34455554433333 367778888999999988765211 11111122 23478889987 555666676665
Q ss_pred C-CCCe-EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCc--hhHHHHHhh
Q 000169 1073 L-PSVS-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR--ESVLARDLD 1146 (1953)
Q Consensus 1073 a-Pslk-Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk 1146 (1953)
- .+++ +++|.|.. ....+ +....+++++|+|+..|.+- ...+.-....|+|||||++|... .-.+.+.|.
T Consensus 318 syng~ksvc~ygggn-R~eqi---e~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkill 393 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGN-RNEQI---EDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILL 393 (629)
T ss_pred hhcCcceEEEecCCC-chhHH---HHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhh
Confidence 3 4444 45554443 22222 33467889999999998754 23334446789999999999764 446777777
Q ss_pred hcccceeEEec-ccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RYRCQRRLLLT-GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L~a~~RLLLT-GTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.++.++..+|| || ...
T Consensus 394 diRPDRqtvmTSAT-WP~-------------------------------------------------------------- 410 (629)
T KOG0336|consen 394 DIRPDRQTVMTSAT-WPE-------------------------------------------------------------- 410 (629)
T ss_pred hcCCcceeeeeccc-Cch--------------------------------------------------------------
Confidence 77777755554 33 110
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
-+||+.....+ +. .++++- .+.+ .+
T Consensus 411 --~VrrLa~sY~K---ep--~~v~vG----------------sLdL--------------------------------~a 435 (629)
T KOG0336|consen 411 --GVRRLAQSYLK---EP--MIVYVG----------------SLDL--------------------------------VA 435 (629)
T ss_pred --HHHHHHHHhhh---Cc--eEEEec----------------ccce--------------------------------ee
Confidence 11222221111 00 111110 0000 00
Q ss_pred CCCCCCCCCccccchh-hhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKD-FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d-~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
.|. .... ++...+.|++.+..++.. ...+.||||||....++|-|..-|...||....|||.-.+.+|+
T Consensus 436 ~~s---------VkQ~i~v~~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE 505 (629)
T KOG0336|consen 436 VKS---------VKQNIIVTTDSEKLEIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDRE 505 (629)
T ss_pred eee---------eeeeEEecccHHHHHHHHHHHHh-cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHH
Confidence 000 0000 111234455554444443 35788999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
.+++.|+++.-. ||++|+.+++|||++++.+|++||.|-|-..|++|+||++|.|.+.+..
T Consensus 506 ~al~~~ksG~vr---ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si 566 (629)
T KOG0336|consen 506 MALEDFKSGEVR---ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI 566 (629)
T ss_pred HHHHhhhcCceE---EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE
Confidence 999999975544 7999999999999999999999999999999999999999999887653
No 85
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.70 E-value=1.5e-15 Score=182.53 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=72.1
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcC--CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ--LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rG--ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVI 1420 (1953)
.+.++||||+....++.+...|+..+ +.+..++|.++..+|.+.. .. .+|++|+++++|||+.. ++||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999999865 5788999999999887653 22 38999999999999986 4666
Q ss_pred EcCCCCCchhHHhhhhccc
Q 000169 1421 IYDPDPNPKNEEQAVARAH 1439 (1953)
Q Consensus 1421 ifDppWNP~~d~QAiGRAh 1439 (1953)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 678999999999985
No 86
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=5.6e-16 Score=184.97 Aligned_cols=313 Identities=22% Similarity=0.283 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-HHH---HHhCCCCCe-EEEechH-HHHHHHHHHHHHCC--
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-YLM---EFKGNYGPH-LIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa-~Ll---e~kg~~GP~-LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
|.|-.+|.-.++ +...|=-.-+|+|||...|-.+. +.+ +.+...||+ ||+||+. +..|...|.++|+.
T Consensus 248 piq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y 323 (731)
T KOG0339|consen 248 PIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY 323 (731)
T ss_pred cccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc
Confidence 344445544443 44444344599999976654332 232 234456787 5666976 77888899999864
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhccc
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC 1150 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a 1150 (1953)
+++++..+|+.....+.. .. .....+||+|+++|+... ....-.+..|+||||+.+|.... ........+++.
T Consensus 324 gl~~v~~ygGgsk~eQ~k--~L-k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp 400 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSK--EL-KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP 400 (731)
T ss_pred cceEEEeecCCcHHHHHH--hh-hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC
Confidence 566666555543332321 22 367899999999998653 22333467899999999996533 233333445555
Q ss_pred ce-eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1151 QR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1151 ~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
++ .|++++|= .. ++.++
T Consensus 401 drQtllFsaTf--------------------------~~------------------------------kIe~l------ 418 (731)
T KOG0339|consen 401 DRQTLLFSATF--------------------------KK------------------------------KIEKL------ 418 (731)
T ss_pred cceEEEeeccc--------------------------hH------------------------------HHHHH------
Confidence 54 56677762 00 01111
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
..+++. +.+.++ ....-. -+.-|++.-.+|-.
T Consensus 419 ---ard~L~---dpVrvV-qg~vge---------------------------------------an~dITQ~V~V~~s-- 450 (731)
T KOG0339|consen 419 ---ARDILS---DPVRVV-QGEVGE---------------------------------------ANEDITQTVSVCPS-- 450 (731)
T ss_pred ---HHHHhc---CCeeEE-Eeehhc---------------------------------------cccchhheeeeccC--
Confidence 112211 111111 111000 00001111111211
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIer 1389 (1953)
...|+.+|.+-|.+.. ...+||||..-....+.|...|+..|+.+..+||++.+.+|.+.|.+
T Consensus 451 ----------------~~~Kl~wl~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 451 ----------------EEKKLNWLLRHLVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred ----------------cHHHHHHHHHHhhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 1246667766666654 34589999999999999999999999999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|+..... +|+.|+++.+||++....|||+||.--+...+.|+|||.+|.|-+... |.|+|
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGva--yTlvT 573 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVA--YTLVT 573 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccccee--eEEec
Confidence 9986666 799999999999999999999999999999999999999999988443 44444
No 87
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.70 E-value=5.8e-15 Score=189.85 Aligned_cols=318 Identities=21% Similarity=0.187 Sum_probs=214.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CC---CCeEEEechHHHHH-HHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NY---GPHLIIVPNAVLVN-WKSELHKW 1072 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~---GP~LIVVP~SLL~Q-W~~Ef~Kw 1072 (1953)
.+|+|.|..++..+.. +.|.++..+||+|||..|+..+...+-..+ .. -.+|-|.|...|.+ -...+..|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 3799999999987775 999999999999999999876665544342 11 24799999875554 55556555
Q ss_pred C--CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh------hhcccccCccEEEcccccccCC--chhHHH
Q 000169 1073 L--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD--RESVLA 1142 (1953)
Q Consensus 1073 a--PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd------~s~L~kikWd~VIIDEAHrLKN--~~SKls 1142 (1953)
. -++.+-+-+|......+ +......+||+|||++++.-. +..|. +..+|||||.|.+.+ ..+.++
T Consensus 97 ~~~~G~~v~vRhGDT~~~er---~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK---QKMLKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHcCCccceecCCCChHHh---hhccCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccccchhhh
Confidence 4 35666666775433222 234567889999999988532 23343 456899999999975 345566
Q ss_pred HHhhhc---c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000169 1143 RDLDRY---R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (1953)
Q Consensus 1143 raLk~L---~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~ 1218 (1953)
-.|.++ . .-.|++||||= .++.++ -.||.+.-. +.
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV--~~~~~v---arfL~g~~~------------~~------------------------ 210 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATV--GPPEEV---AKFLVGFGD------------PC------------------------ 210 (814)
T ss_pred hhHHHHHhhCcccEEEeehhcc--CCHHHH---HHHhcCCCC------------ce------------------------
Confidence 656554 2 24699999994 233333 333322100 00
Q ss_pred HHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000169 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298 (1953)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nil 1298 (1953)
.-|......+..+.+.++-......
T Consensus 211 ---------------~Iv~~~~~k~~~i~v~~p~~~~~~~---------------------------------------- 235 (814)
T COG1201 211 ---------------EIVDVSAAKKLEIKVISPVEDLIYD---------------------------------------- 235 (814)
T ss_pred ---------------EEEEcccCCcceEEEEecCCccccc----------------------------------------
Confidence 0000011111111111110000000
Q ss_pred HHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC-CeEEeecCC
Q 000169 1299 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRIDGT 1377 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG-ikylRLDGs 1377 (1953)
.| -...+...+.++..+...+|||++.+.+.+.+...|+..+ ..+..-||+
T Consensus 236 -------~~---------------------~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgS 287 (814)
T COG1201 236 -------EE---------------------LWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGS 287 (814)
T ss_pred -------cc---------------------hhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeeccc
Confidence 00 0012233344445556689999999999999999999887 888889999
Q ss_pred CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcc-cccCCcceEEEEEE
Q 000169 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVKVIYM 1452 (1953)
Q Consensus 1378 Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRA-hRIGQKKeV~VyrL 1452 (1953)
.+.+.|..+-++|..+.-. .++||....+|||+-.+|.||.|.+|-.-...+||+||+ ||+|....-.||-.
T Consensus 288 lSre~R~~vE~~lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 288 LSRELRLEVEERLKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred ccHHHHHHHHHHHhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 9999999999999986654 688999999999999999999999999999999999998 67776555444443
No 88
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.69 E-value=8.6e-16 Score=185.09 Aligned_cols=333 Identities=19% Similarity=0.239 Sum_probs=200.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHH----------hCCCCC--eEEEechH-HHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEF----------KGNYGP--HLIIVPNA-VLVNWK 1066 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~----------kg~~GP--~LIVVP~S-LL~QW~ 1066 (1953)
..|.|...|.-++. .....|=|.|||+|||+.+.-.|.. +.+. ...+.. .|||+|+. |..|..
T Consensus 204 Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 204 PTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred CccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 34455555544443 2245567899999999987555544 2211 111122 69999988 667777
Q ss_pred HHHHHHC--CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---h-ccccc-CccEEEcccccccC--Cc
Q 000169 1067 SELHKWL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---S-KLSKV-DWKYIIIDEAQRMK--DR 1137 (1953)
Q Consensus 1067 ~Ef~Kwa--PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s-~L~ki-kWd~VIIDEAHrLK--N~ 1137 (1953)
.-|...+ +.+++..+.|+-...++. .+....++|||+|+++|..-. . .+.++ +..++||||++||- .+
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQq---RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh 357 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQ---RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH 357 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHH---HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc
Confidence 7777665 568888888876654432 233448899999999986431 1 23332 56799999999994 33
Q ss_pred hhHHHHHhhhcc------cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000169 1138 ESVLARDLDRYR------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1211 (1953)
Q Consensus 1138 ~SKlsraLk~L~------a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eE 1211 (1953)
=..+++.|..+. -..-+++|||-. |. ...|.......... +.
T Consensus 358 F~Els~lL~~L~e~~~~~qrQTlVFSATlt------------~~--------------~~~~~~~~~k~~~k------~~ 405 (731)
T KOG0347|consen 358 FEELSKLLKHLNEEQKNRQRQTLVFSATLT------------LV--------------LQQPLSSSRKKKDK------ED 405 (731)
T ss_pred HHHHHHHHHHhhhhhcccccceEEEEEEee------------hh--------------hcChhHHhhhccch------hh
Confidence 334444444442 112466676631 00 00010000000000 00
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHH
Q 000169 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 1291 (1953)
Q Consensus 1212 ek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~ 1291 (1953)
.....+..| .+.+.-.-+++ + +++++.+.
T Consensus 406 ~~~~kiq~L------------mk~ig~~~kpk---i--iD~t~q~~---------------------------------- 434 (731)
T KOG0347|consen 406 ELNAKIQHL------------MKKIGFRGKPK---I--IDLTPQSA---------------------------------- 434 (731)
T ss_pred hhhHHHHHH------------HHHhCccCCCe---e--EecCcchh----------------------------------
Confidence 000011111 11111111121 1 11222111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeE
Q 000169 1292 KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1371 (1953)
Q Consensus 1292 ~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGiky 1371 (1953)
....+..-+-.| |.+....+- .-++ ..-..|.||||+..+.+..|.-+|...+++.
T Consensus 435 --ta~~l~Es~I~C--~~~eKD~yl---yYfl-----------------~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p 490 (731)
T KOG0347|consen 435 --TASTLTESLIEC--PPLEKDLYL---YYFL-----------------TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPP 490 (731)
T ss_pred --HHHHHHHHhhcC--CccccceeE---EEEE-----------------eecCCceEEEechHHHHHHHHHHHhhcCCCC
Confidence 111222333334 222111000 0011 1234579999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1372 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1372 lRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+.||..|.+++|.+-+++|.... ..+||+|+++++|||++.++|||+|..|-+...|++|-||+.|.+... |.|.
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~---~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsvm 565 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSP---SGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSVM 565 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCC---CeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEEE
Confidence 99999999999999999998733 348999999999999999999999999999999999999999998554 4443
No 89
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.68 E-value=2.8e-15 Score=201.44 Aligned_cols=314 Identities=16% Similarity=0.233 Sum_probs=181.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs- 1075 (1953)
+..+.++|..++..++. +.+.++..+||+|||..++.++.++.. ....+|||+|+. |+.|+..+|.+++..
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 34789999999887775 778899999999999855544444432 245799999987 778899999998753
Q ss_pred -Ce---EEEEecchhhHhHH-HHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccc
Q 000169 1076 -VS---CIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (1953)
Q Consensus 1076 -lk---Vvvy~Gs~deRk~l-~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a 1150 (1953)
+. +.+|+|......+. ....+..+.++|||+|++++.+....+.. ++++|||||||+|.......-+.|.
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~---- 223 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLK---- 223 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHH----
Confidence 22 23466654332211 11123345799999999999877666654 8999999999998653222222221
Q ss_pred ceeEEecccCCCC-CHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1151 QRRLLLTGTPLQN-DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1151 ~~RLLLTGTPLQN-nL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
|.|- .. .+..+|.++.. +.. ...+. .+..+..+++.
T Consensus 224 -----llGF--~~e~i~~il~~~~~---~~~-----------------------~~~~~-------~~~~~~~~~~~--- 260 (1171)
T TIGR01054 224 -----LLGF--SEELIEKAWKLIRL---RLK-----------------------LYRAL-------HAKKRLELLEA--- 260 (1171)
T ss_pred -----HcCC--CHHHHHHHHHHhhh---ccc-----------------------cchHH-------HHHHHHHHHHh---
Confidence 1110 00 01112222211 000 00000 11122222211
Q ss_pred HHHHhhhhcCCCCceE-EEEEeccC--HHH--HHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1230 RRRVEDVEGSLPPKVS-IVLRCRMS--AIQ--SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE-~vV~c~MS--a~Q--r~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
+|.+.. ..+.+..| +.. ..++..+. .+... .. ...++.+
T Consensus 261 ----------~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-----~~~v~-------~~--------------~~~~r~I 304 (1171)
T TIGR01054 261 ----------IPGKKRGCLIVSSATGRPRGKRAKLFRELL-----GFEVG-------GG--------------SDTLRNV 304 (1171)
T ss_pred ----------hhhccCcEEEEEeCCCCccccHHHHccccc-----ceEec-------Cc--------------cccccce
Confidence 112211 12222222 100 01111000 00000 00 0001111
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechh---HHHHHHHHHHHHcCCeEEeecCCCCHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT---KLLDILEEYLQWRQLVYRRIDGTTSLE 1381 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft---~~LDILed~L~~rGikylRLDGsTs~e 1381 (1953)
. |. .+....+...|..+|..+ +..+||||+.. ..++.|..+|...|+++..+||+++
T Consensus 305 ~-~~--------------~~~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~-- 364 (1171)
T TIGR01054 305 V-DV--------------YVEDEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP-- 364 (1171)
T ss_pred E-EE--------------EEecccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC--
Confidence 0 00 001111234555666543 57899999998 9999999999999999999999986
Q ss_pred HHHHHHHHhhcCCCCccEEEEe----ccccccccCCcc-CCeEEEcCCCCC
Q 000169 1382 DRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDPN 1427 (1953)
Q Consensus 1382 eRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQa-ADtVIifDppWN 1427 (1953)
...+++|.+++.+ +|++ |+++++|||++. +++|||||+|--
T Consensus 365 --~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 365 --KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred --HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 3689999976554 4555 699999999999 899999999943
No 90
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.68 E-value=2.5e-15 Score=193.69 Aligned_cols=375 Identities=17% Similarity=0.166 Sum_probs=203.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
..|.++|.+++..+.... .+...+|...||+|||..++.++...+.. .+.+|||||.. |+.||...|.++++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 379999999999887643 33557899999999999998877766642 35799999976 78999999999875 56
Q ss_pred EEEEecchh--hHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC--chhHHH--HHh----hh
Q 000169 1078 CIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD--RESVLA--RDL----DR 1147 (1953)
Q Consensus 1078 Vvvy~Gs~d--eRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN--~~SKls--raL----k~ 1147 (1953)
+.+++|... .+...+. .+..+..+|||+|+..+. +.-.++.+|||||+|...- .....+ +.+ ..
T Consensus 218 v~~~~s~~s~~~r~~~~~-~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~ 291 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWR-KAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAK 291 (679)
T ss_pred EEEEECCCCHHHHHHHHH-HHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhh
Confidence 777776533 3333322 244567899999998764 2224678999999998632 111111 111 12
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~-kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
......+++||||... .++.... +.+.. -...+.+. .+.-..... + ...+... .-...+.+
T Consensus 292 ~~~~~~il~SATps~~---s~~~~~~----g~~~~-~~l~~r~~~~~~p~v~~i---d---~~~~~~~----~~~~~ls~ 353 (679)
T PRK05580 292 LENIPVVLGSATPSLE---SLANAQQ----GRYRL-LRLTKRAGGARLPEVEII---D---MRELLRG----ENGSFLSP 353 (679)
T ss_pred ccCCCEEEEcCCCCHH---HHHHHhc----cceeE-EEeccccccCCCCeEEEE---e---chhhhhh----cccCCCCH
Confidence 2344688899999422 2211110 00000 00000000 000000000 0 0000000 00001111
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh--
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT-- 1304 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi-- 1304 (1953)
.++..+++.+.. ....++.++ . ..+.... ....|-..-+|
T Consensus 354 ~l~~~i~~~l~~----g~qvll~~n---------------------r----------rGy~~~~---~C~~Cg~~~~C~~ 395 (679)
T PRK05580 354 PLLEAIKQRLER----GEQVLLFLN---------------------R----------RGYAPFL---LCRDCGWVAECPH 395 (679)
T ss_pred HHHHHHHHHHHc----CCeEEEEEc---------------------C----------CCCCCce---EhhhCcCccCCCC
Confidence 122212211110 001111110 0 0000000 00000000000
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCC--H
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTS--L 1380 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs--~ 1380 (1953)
|.-|..+. .......+..||....+...++.+ |... |..+....+.+++.|... ++++.++|+++. .
T Consensus 396 C~~~l~~h----~~~~~l~Ch~Cg~~~~~~~~Cp~C---g~~~--l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~ 466 (679)
T PRK05580 396 CDASLTLH----RFQRRLRCHHCGYQEPIPKACPEC---GSTD--LVPVGPGTERLEEELAELFPEARILRIDRDTTRRK 466 (679)
T ss_pred CCCceeEE----CCCCeEECCCCcCCCCCCCCCCCC---cCCe--eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccc
Confidence 11111110 011112233344322222222211 2222 334445567777777765 889999999986 4
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC---CCc---------hhHHhhhhcccccCCcceEE
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD---PNP---------KNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp---WNP---------~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+++++++++|.+++.+ +|++|+....|+|++.++.|+++|.| ..| ..+.|+.||++|.+....|.
T Consensus 467 ~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vi 543 (679)
T PRK05580 467 GALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVL 543 (679)
T ss_pred hhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEE
Confidence 6799999999987666 78999999999999999999888776 223 67999999999999888887
Q ss_pred EEEE
Q 000169 1449 VIYM 1452 (1953)
Q Consensus 1449 VyrL 1452 (1953)
+...
T Consensus 544 iqT~ 547 (679)
T PRK05580 544 IQTY 547 (679)
T ss_pred EEeC
Confidence 6554
No 91
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1e-15 Score=178.53 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccc
Q 000169 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (1953)
Q Consensus 1328 GKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAG 1407 (1953)
.|+.+|..|..-+ +=...||||.....+..|...|...|+.+..|||.+..++|..++++|+.+... +|++|.+.
T Consensus 316 ~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ 390 (477)
T KOG0332|consen 316 DKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVC 390 (477)
T ss_pred hHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEechh
Confidence 3566665533322 223579999999999999999999999999999999999999999999987776 89999999
Q ss_pred ccccCCccCCeEEEcCCCC------CchhHHhhhhcccccCCcceE
Q 000169 1408 GRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1408 GeGLNLQaADtVIifDppW------NP~~d~QAiGRAhRIGQKKeV 1447 (1953)
++|||.+.++.||+||+|- ++..|+||+||++|.|.+.-+
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a 436 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA 436 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE
Confidence 9999999999999999985 688999999999999977654
No 92
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.67 E-value=3.5e-16 Score=166.30 Aligned_cols=154 Identities=28% Similarity=0.383 Sum_probs=111.8
Q ss_pred CCcHHHHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPs 1075 (1953)
+|||||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 69999999999999887654 78899999999999999998888774 89999997 5899999999888876
Q ss_pred CeEEEEecchh----------hHhHHHHHHHhhccccEEEEeHHHHHhhhhc-------------ccccCccEEEccccc
Q 000169 1076 VSCIYYVGAKD----------QRSRLFSQEVAALKFNVLVTTYEFIMYDRSK-------------LSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1076 lkVvvy~Gs~d----------eRk~l~~qei~~~~fdVVITTYEsL~kd~s~-------------L~kikWd~VIIDEAH 1132 (1953)
........... ...............+++++|+..+...... +....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 55443221100 0000011123356778999999999765321 233478999999999
Q ss_pred ccCCchhHHHHHhhhcccceeEEecccCC
Q 000169 1133 RMKDRESVLARDLDRYRCQRRLLLTGTPL 1161 (1953)
Q Consensus 1133 rLKN~~SKlsraLk~L~a~~RLLLTGTPL 1161 (1953)
++.+... ++.+..+...++|+|||||.
T Consensus 157 ~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9865433 55565588889999999995
No 93
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.66 E-value=8.6e-15 Score=191.74 Aligned_cols=317 Identities=20% Similarity=0.206 Sum_probs=218.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---P- 1074 (1953)
.|+.||.++++.+.+ +.+.|++-.||+|||..++..|...+- +.....+|+|-|+. |.....+.|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l-~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLL-RDPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHh-hCcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999988876 889999999999999999888877664 34445899999976 6666888888885 4
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh------hhcccccCccEEEcccccccCC-chhHHHHHhhh
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDR 1147 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd------~s~L~kikWd~VIIDEAHrLKN-~~SKlsraLk~ 1147 (1953)
.+.+..|.|......+. .+.....+|+||+|+++... ...+...+++||||||+|.++. ..|-+.-.+++
T Consensus 145 ~v~~~~y~Gdt~~~~r~---~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 145 KVTFGRYTGDTPPEERR---AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred cceeeeecCCCChHHHH---HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHH
Confidence 56778888865433221 45578899999999998642 1122223589999999999975 33433333333
Q ss_pred c-------c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhh-hcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000169 1148 Y-------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (1953)
Q Consensus 1148 L-------~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~-F~kPf~k~g~~~~~e~d~l~eEek~liI~ 1218 (1953)
+ . ....++.|||- ++...|.+. |...|... ...
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~~-v~~----------------- 263 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEVP-VDE----------------- 263 (851)
T ss_pred HHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcceee-ccC-----------------
Confidence 3 2 23467888883 222233222 22222110 000
Q ss_pred HHHHHhhHHHHHHHHhhhhcCCCCceEEEEE-eccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHH
Q 000169 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLR-CRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297 (1953)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLPpKvE~vV~-c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~ni 1297 (1953)
.--|.-..+++. -+........
T Consensus 264 -------------------~g~~~~~~~~~~~~p~~~~~~~~-------------------------------------- 286 (851)
T COG1205 264 -------------------DGSPRGLRYFVRREPPIRELAES-------------------------------------- 286 (851)
T ss_pred -------------------CCCCCCceEEEEeCCcchhhhhh--------------------------------------
Confidence 001111111111 1000000000
Q ss_pred HHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHH----HHHHHcC----C
Q 000169 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE----EYLQWRQ----L 1369 (1953)
Q Consensus 1298 lmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILe----d~L~~rG----i 1369 (1953)
..-.+...+..++..+...+-++|+|+.+...++.+. ..+...+ .
T Consensus 287 ---------------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~ 339 (851)
T COG1205 287 ---------------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLD 339 (851)
T ss_pred ---------------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhh
Confidence 0113445566777777889999999999999998886 4444445 5
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcceEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
.+....|++..++|.++...|+.++.. ++++|.++-.|+++-..|.||++-.|- .-..+.|+.||++|-+|.--+.
T Consensus 340 ~v~~~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~ 416 (851)
T COG1205 340 AVSTYRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVL 416 (851)
T ss_pred heeeccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEE
Confidence 577889999999999999999987776 899999999999999999999999999 7899999999999999665544
Q ss_pred E
Q 000169 1449 V 1449 (1953)
Q Consensus 1449 V 1449 (1953)
+
T Consensus 417 ~ 417 (851)
T COG1205 417 V 417 (851)
T ss_pred E
Confidence 3
No 94
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.66 E-value=1.9e-14 Score=187.91 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=89.0
Q ss_pred cCCeeEEeechhHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~---rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
.+..+|||+.....++.+.+.|.. .++.++.|||+++.++|.++++.|..+.. -+||+|+++.+||+++++++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r---kVlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR---KVVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe---EEEEecchHhhcccccCceEE
Confidence 356799999999999999999987 47899999999999999999999986433 379999999999999999999
Q ss_pred EEcCCC----CCchh--------------HHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 IIYDPD----PNPKN--------------EEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 IifDpp----WNP~~--------------d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.++.+ |||.. +.||.||++|.+ .. .+|+|.+
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~-~G--~cyrL~t 334 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE-PG--VCYRLWS 334 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC-CC--EEEEeCC
Confidence 999876 45554 789999999983 33 3456655
No 95
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=6.1e-16 Score=156.11 Aligned_cols=120 Identities=31% Similarity=0.452 Sum_probs=111.1
Q ss_pred cHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccc
Q 000169 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (1953)
Q Consensus 1328 GKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAG 1407 (1953)
.|+..+..++.+....+.++||||.....++.+.++|...++.+..++|+++..+|..+++.|+.++ ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888888887667899999999999999999999999999999999999999999999999755 4588899999
Q ss_pred ccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1408 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1408 GeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
++|+|++.+++||+++++|++..++|++||++|.|+++.|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887764
No 96
>PRK14701 reverse gyrase; Provisional
Probab=99.65 E-value=3.9e-15 Score=203.89 Aligned_cols=342 Identities=15% Similarity=0.238 Sum_probs=194.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
|.+++++|..++..++. +.+.++..+||+|||...+.+..++. .....+|||+|+. |+.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34689999999988886 77889999999999984332222221 1234799999987 77888888888764
Q ss_pred --CCeEEEEecchhhHhHH-HHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccc
Q 000169 1075 --SVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (1953)
Q Consensus 1075 --slkVvvy~Gs~deRk~l-~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~ 1151 (1953)
++.+.+++|+.....+. ....+..+.++|+|+|++.+......+...++++|||||||.|....-.+-+.|.
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~----- 224 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQ----- 224 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhh-----
Confidence 35667777765433221 1112345679999999998876654444467999999999998531111111111
Q ss_pred eeEEecccCCCCCHH-HHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1152 RRLLLTGTPLQNDLK-ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~-ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
|-|- ...+. ..|.++.. . + ..+... + ...+.+|...+
T Consensus 225 ----llGF--~~e~~~~~~~il~~---~--------------~------~~~~~~--~-----~~~~~~l~~~~------ 262 (1638)
T PRK14701 225 ----LLGF--YEEIIEKAWKIIYL---K--------------K------QGNIED--A-----MEKREILNKEI------ 262 (1638)
T ss_pred ----cCCC--hHHHHHHHHHhhhc---c--------------c------ccccch--h-----hhhhhhhhhhh------
Confidence 0010 00000 00111110 0 0 000000 0 00011222222
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
..+|......+.+.-|...+.....+... .+.+.... .
T Consensus 263 -------~~~~~~~~~ll~~SAT~~~r~~~~~l~~~-~l~f~v~~------------------------------~---- 300 (1638)
T PRK14701 263 -------EKIGNKIGCLIVASATGKAKGDRVKLYRE-LLGFEVGS------------------------------G---- 300 (1638)
T ss_pred -------hhcCCCccEEEEEecCCCchhHHHHHhhc-CeEEEecC------------------------------C----
Confidence 01233322223222221111000000000 00000000 0
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHH---HHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~---LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
.+....+...++.........|.+++..+ +..+||||+.... ++.|..+|...|+++..+||. |...+
T Consensus 301 -~~~lr~i~~~yi~~~~~~k~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l 371 (1638)
T PRK14701 301 -RSALRNIVDVYLNPEKIIKEHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGF 371 (1638)
T ss_pred -CCCCCCcEEEEEECCHHHHHHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHH
Confidence 00000001111111111113455565543 6789999987664 589999999999999999995 89999
Q ss_pred HHhhcCCCCccEEEEec----cccccccCCcc-CCeEEEcCCCC---CchhHHhhh-------------hcccccCCcce
Q 000169 1388 VDFNSHDSDCFIFLLSI----RAAGRGLNLQS-ADTVIIYDPDP---NPKNEEQAV-------------ARAHRIGQKRE 1446 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLST----rAGGeGLNLQa-ADtVIifDppW---NP~~d~QAi-------------GRAhRIGQKKe 1446 (1953)
++|.+++.+ +|++| +++++|||++. +.+|||||.|- +...|.|.. ||++|-|..-+
T Consensus 372 ~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 372 DLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 999986666 67777 58899999998 99999999998 777666655 99999997644
Q ss_pred E
Q 000169 1447 V 1447 (1953)
Q Consensus 1447 V 1447 (1953)
+
T Consensus 449 ~ 449 (1638)
T PRK14701 449 G 449 (1638)
T ss_pred h
Confidence 4
No 97
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1.9e-14 Score=180.15 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=76.9
Q ss_pred HHHHHHHHHHc--CCeEEeecCCCCHHHH--HHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC---C--
Q 000169 1357 LDILEEYLQWR--QLVYRRIDGTTSLEDR--ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP---N-- 1427 (1953)
Q Consensus 1357 LDILed~L~~r--GikylRLDGsTs~eeR--qeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW---N-- 1427 (1953)
.+.+++.|... +.++.++|++++...+ ..+++.|.+++.+ +|++|.....|+|++.++.|+++|.|- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 56777777765 8899999999877655 8999999986666 789999999999999999998776662 2
Q ss_pred -------chhHHhhhhcccccCCcceEEEEEE
Q 000169 1428 -------PKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1428 -------P~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
...+.|+.||++|.+....|.+..+
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 3578999999999998888876544
No 98
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=2.4e-13 Score=175.69 Aligned_cols=418 Identities=14% Similarity=0.172 Sum_probs=236.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HH---HHHHHHHHCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VN---WKSELHKWLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~Q---W~~Ef~KwaPs 1075 (1953)
..++-|+.|---|. .|-|.-..||.|||++++..+..... .+ ..++||+|+..| .+ |...|.+|+ +
T Consensus 82 ~~ydvQliGg~~Lh------~G~Iaem~TGeGKTL~a~Lpa~~~al-~G--~~V~VvTpn~yLA~qd~e~m~~l~~~l-G 151 (896)
T PRK13104 82 RHFDVQLIGGMVLH------EGNIAEMRTGEGKTLVATLPAYLNAI-SG--RGVHIVTVNDYLAKRDSQWMKPIYEFL-G 151 (896)
T ss_pred CcchHHHhhhhhhc------cCccccccCCCCchHHHHHHHHHHHh-cC--CCEEEEcCCHHHHHHHHHHHHHHhccc-C
Confidence 34445888765443 35588899999999987655543221 22 358999998844 43 666666665 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHH----Hhhhhcccc-----cCccEEEcccccccCCchhHHHHHhh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI----MYDRSKLSK-----VDWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL----~kd~s~L~k-----ikWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
+.|.++.|+.....+. .....+|+++|...| .++.-.+.. ..+.++||||+|.|.= .
T Consensus 152 Ltv~~i~gg~~~~~r~-----~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI---------D 217 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQ-----EAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI---------D 217 (896)
T ss_pred ceEEEEeCCCCHHHHH-----HHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh---------h
Confidence 6776666654332221 122579999999987 333322211 3789999999999842 1
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHhh----hcccc-------cC----------Ch--HHHHhhhcCCcccCCCCCCC
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-------FD----------NR--KAFHDWFSQPFQKEGPTHNA 1203 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-------F~----------S~--k~F~e~F~kPf~k~g~~~~~ 1203 (1953)
.++.-|++||.+- ...++|..++. |..+. |. +. ..+.+.| +...+.....
T Consensus 218 --eArtPLIISg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~---~~~~~il~~~ 290 (896)
T PRK13104 218 --EARTPLIISGAAE--DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEEL---LTKAKLLDPG 290 (896)
T ss_pred --ccCCceeeeCCCc--cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHH---HHhCCccCCc
Confidence 1234577788653 22445544443 32221 00 00 0000110 0000000000
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchh
Q 000169 1204 DDDWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPED 1275 (1953)
Q Consensus 1204 e~d~l~eEek~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ 1275 (1953)
+ .+.........+.+...|+.. ++.|-+.-|.. +....+|. ..| -+..-+.+.+...-.+.+....
T Consensus 291 ~--~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~ 364 (896)
T PRK13104 291 E--SLYHASNIMLMHHVNAALKAHAMFHRDIDYIVK---DNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN 364 (896)
T ss_pred c--cccCchhhhHHHHHHHHHHHHHHhcCCCceEEE---CCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc
Confidence 0 000001111223333334332 22222221111 11111221 122 2334455555443322222111
Q ss_pred HH-h-----hhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcC
Q 000169 1276 EK-R-----RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTG 1344 (1953)
Q Consensus 1276 ek-~-----~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatG 1344 (1953)
.. . ..+......+.........-..|.++.+-+.+.-|.... ...........|+..+..-+..+...|
T Consensus 365 ~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g 444 (896)
T PRK13104 365 QTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRK 444 (896)
T ss_pred eeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCC
Confidence 00 0 000000000000001111234566666655544333211 111222344568888888888889999
Q ss_pred CeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc---------
Q 000169 1345 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--------- 1415 (1953)
Q Consensus 1345 hKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa--------- 1415 (1953)
..|||||.+....+.|..+|...|+++..|+|.....+|..+.+.|+.+ . ++|+|+.+|+|+|+.=
T Consensus 445 ~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATNmAGRGtDI~Lggn~~~~~~ 519 (896)
T PRK13104 445 QPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATNMAGRGTDIVLGGSLAADLA 519 (896)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEeccCccCCcceecCCchhhhhh
Confidence 9999999999999999999999999999999999999999999999864 2 8999999999999762
Q ss_pred -----------------------------CCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1416 -----------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1416 -----------------------------ADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
-=+||.-..+-|-..+.|-.||++|.|.......| +++|+.+.+
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~--lSleD~l~~ 592 (896)
T PRK13104 520 NLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY--LSLEDNLMR 592 (896)
T ss_pred ccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE--EEcCcHHHH
Confidence 23889999999999999999999999999887665 345555543
No 99
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.63 E-value=5.5e-14 Score=183.83 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=88.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~---rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
.+..+|||+.....++.+.+.|.. .++.++.+||+++.++|.+++..|..+. +-||++|+++.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~---rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR---RKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC---eEEEEecchHHhcccccCceEE
Confidence 457899999999999999999987 5788999999999999999999997643 3489999999999999999999
Q ss_pred EEcCCC----CCc--------------hhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 IIYDPD----PNP--------------KNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 IifDpp----WNP--------------~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.++.+ |+| ..+.||.||++|.+ +=.+|+|.+
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t 337 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYS 337 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecC
Confidence 997765 333 35899999999984 334555544
No 100
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.63 E-value=4.7e-15 Score=190.08 Aligned_cols=121 Identities=22% Similarity=0.253 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
..||..|..||..... ..++||||+....+|.|.+.|...||.+..|||+.+..+|...+++|+++.. .+|++|++
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~---~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV---NLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc---eEEEehhh
Confidence 4588888888887654 7899999999999999999999999999999999999999999999997544 49999999
Q ss_pred cccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.+|||+.....||+||.+--...|++|.||++|.|.+.-+.+|.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi 717 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFI 717 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEe
Confidence 999999999999999999999999999999999999888444443
No 101
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.62 E-value=1.9e-14 Score=186.51 Aligned_cols=149 Identities=22% Similarity=0.170 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-Pslk 1077 (1953)
+|++.|..++.-.+.- +.|.|+|.+||+|||+++...|...+.. ..++++.|||.. |+..-.++|.+|. -+++
T Consensus 31 el~~~qq~av~~~~~~---~~N~li~aPTgsGKTlIA~lai~~~l~~--~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLLS---DENVLISAPTGSGKTLIALLAILSTLLE--GGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccccC---CCcEEEEcCCCCchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 7999999998655432 7889999999999999998777665542 257999999965 7777888888664 3789
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHh---hhhcccccCccEEEcccccccCCc-h-----hHHHHHhhhc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDR-E-----SVLARDLDRY 1148 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~k---d~s~L~kikWd~VIIDEAHrLKN~-~-----SKlsraLk~L 1148 (1953)
|.++.|.-+... ....+++|+||||+.+-. +... --...++|||||+|.+... . +-.++....-
T Consensus 106 V~~~TgD~~~~~------~~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~ 178 (766)
T COG1204 106 VGISTGDYDLDD------ERLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN 178 (766)
T ss_pred EEEecCCcccch------hhhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC
Confidence 999999876542 235678999999998742 2222 2236789999999999764 1 2222222222
Q ss_pred ccceeEEecccC
Q 000169 1149 RCQRRLLLTGTP 1160 (1953)
Q Consensus 1149 ~a~~RLLLTGTP 1160 (1953)
..-+.++||||-
T Consensus 179 ~~~rivgLSATl 190 (766)
T COG1204 179 ELIRIVGLSATL 190 (766)
T ss_pred cceEEEEEeeec
Confidence 234789999994
No 102
>PRK09694 helicase Cas3; Provisional
Probab=99.60 E-value=2.5e-13 Score=177.97 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC---CeEEeecCCCCHHHH----HHHHHHh-hcCCCCccEEEEe
Q 000169 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDR----ESAIVDF-NSHDSDCFIFLLS 1403 (1953)
Q Consensus 1332 lLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG---ikylRLDGsTs~eeR----qeaIerF-Ns~ds~ifVfLLS 1403 (1953)
++..++..+ ..|.+|||||+.+..+..+.+.|+..+ +.+..+||.++..+| .++++.| +++......+|++
T Consensus 549 ~l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 549 LLQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 344444433 578899999999999999999998765 678999999999999 5678899 4332222357999
Q ss_pred ccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCc
Q 000169 1404 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (1953)
Q Consensus 1404 TrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQK 1444 (1953)
|.+...|||+ .+|+||....| ...++||+||+||-|.+
T Consensus 628 TQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 628 TQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred Ccchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999999 57999887666 56899999999999875
No 103
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=2.9e-14 Score=174.52 Aligned_cols=321 Identities=17% Similarity=0.218 Sum_probs=203.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll-e~k----g~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
.-.|-|..++..++. +.+++-|..+|.|||+..+..|...+ ... ...-..+||.|.. |+.|-..|+.++.
T Consensus 158 ~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 355778888888887 78899999999999999887654433 322 1223679999976 7778889999887
Q ss_pred --CC--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc----ccccCccEEEcccccccCCchhHHHHHh
Q 000169 1074 --PS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK----LSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (1953)
Q Consensus 1074 --Ps--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~----L~kikWd~VIIDEAHrLKN~~SKlsraL 1145 (1953)
+. +.+..+........+ ........++++|.|+..+...... +.-.+..++|+||+.++.++. -+...+
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk--~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~-~f~~Ql 310 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQK--PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPE-FFVEQL 310 (593)
T ss_pred CCCCCchhhhhcccccchhhc--cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChh-hHHHHH
Confidence 32 333333322211111 1123456789999999998876433 333456679999999998761 111111
Q ss_pred hhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1146 k~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
. ++++.+.- |.+. ...|..-+. . . +.++..+
T Consensus 311 a--------------------~I~sac~s--~~i~------~a~FSat~~----------~--~-------VEE~~~~-- 341 (593)
T KOG0344|consen 311 A--------------------DIYSACQS--PDIR------VALFSATIS----------V--Y-------VEEWAEL-- 341 (593)
T ss_pred H--------------------HHHHHhcC--cchh------hhhhhcccc----------H--H-------HHHHHHH--
Confidence 1 11111110 1110 000110000 0 0 0001111
Q ss_pred HHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc
Q 000169 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC 1305 (1953)
.+.++ ...+|-. ...+ ++.+.+=
T Consensus 342 ------i~~~~-------~~vivg~--~~sa--------------------------------------~~~V~Qe---- 364 (593)
T KOG0344|consen 342 ------IKSDL-------KRVIVGL--RNSA--------------------------------------NETVDQE---- 364 (593)
T ss_pred ------hhccc-------eeEEEec--chhH--------------------------------------hhhhhhh----
Confidence 11111 0011111 1100 0000000
Q ss_pred CCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHH-HHcCCeEEeecCCCCHHHHH
Q 000169 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1306 NHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L-~~rGikylRLDGsTs~eeRq 1384 (1953)
.+| ....-+|+..+..++... -.-.+|||.|..+-+..|-..| ..-++.+..+||.-+..+|.
T Consensus 365 ---lvF-----------~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrd 428 (593)
T KOG0344|consen 365 ---LVF-----------CGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRD 428 (593)
T ss_pred ---hee-----------eecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHH
Confidence 000 112246777777777654 3457999999999999999999 78899999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
..+++|+.+... +|++|++.++|||+.++++||+||.|-.-..|++++||++|.|+......||-
T Consensus 429 e~~~~FR~g~Iw---vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 429 ETMERFRIGKIW---VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred HHHHHHhccCee---EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec
Confidence 999999975544 79999999999999999999999999999999999999999999877665553
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=2.2e-12 Score=166.13 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=120.6
Q ss_pred HHHHHhcCCCCCCCCCccccc----hh-hhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEe
Q 000169 1299 MELRKTCNHPLLNYPYFSDLS----KD-FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~dls----~d-~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylR 1373 (1953)
..|+++-+.+.+..|...... .+ .......|+..|...+......+..|||||.+....+.|...|...|+++..
T Consensus 390 ~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~ 469 (796)
T PRK12906 390 EEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAV 469 (796)
T ss_pred HHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeE
Confidence 456777666665544332111 11 1223346888888888888889999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCc---cCC-----eEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1374 LDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQ---aAD-----tVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
|+|.....++.-+...|.. +. ++|+|+.+|+|+|+. .+. +||.++.|-|...|.|+.||++|.|...
T Consensus 470 Lna~~~~~Ea~ii~~ag~~--g~---VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G 544 (796)
T PRK12906 470 LNAKNHAKEAEIIMNAGQR--GA---VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPG 544 (796)
T ss_pred ecCCcHHHHHHHHHhcCCC--ce---EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCc
Confidence 9999876666666666653 23 899999999999995 567 9999999999999999999999999998
Q ss_pred eEEEEEEehhhhhhhh
Q 000169 1446 EVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~s 1461 (1953)
.+..| ++.++.+..
T Consensus 545 ~s~~~--~sleD~l~~ 558 (796)
T PRK12906 545 SSRFY--LSLEDDLMR 558 (796)
T ss_pred ceEEE--EeccchHHH
Confidence 87544 344554443
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=3e-12 Score=165.52 Aligned_cols=412 Identities=17% Similarity=0.237 Sum_probs=234.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HH---HHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VN---WKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~Q---W~~Ef~Kwa 1073 (1953)
|...++-|+-|.--| +.|.|.-..||.|||++++..+ ++....+. .+-||+|+..| .+ |...+.+++
T Consensus 79 g~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa-~l~aL~G~--~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 79 GMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPA-YLNALTGK--GVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHH-HHHHHcCC--CEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 334555588876543 2355888999999999875444 22222232 46699998854 44 444444444
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----h-----hcccccCccEEEcccccccCCchhHHHHH
Q 000169 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----R-----SKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1074 PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~-----s~L~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
++++.+..|..+...+. .....+|+++|...|--| . ..+....+.++||||++.|.=
T Consensus 150 -Glsv~~i~~~~~~~er~-----~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLI-------- 215 (830)
T PRK12904 150 -GLSVGVILSGMSPEERR-----EAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILI-------- 215 (830)
T ss_pred -CCeEEEEcCCCCHHHHH-----HhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhee--------
Confidence 56666666643332211 112479999999877322 1 112234789999999999741
Q ss_pred hhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCCh------------------HHHHhhhcCCcccCCCCCCCChh
Q 000169 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------KAFHDWFSQPFQKEGPTHNADDD 1206 (1953)
Q Consensus 1145 Lk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------------------k~F~e~F~kPf~k~g~~~~~e~d 1206 (1953)
.. ++.-|++||.+- ...++|..++-+...+-... ....+.|..+ +
T Consensus 216 -De--ArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~--------~---- 278 (830)
T PRK12904 216 -DE--ARTPLIISGPAE--DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIE--------N---- 278 (830)
T ss_pred -cc--CCCceeeECCCC--cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCc--------c----
Confidence 11 233477777643 22445555544433221110 0011111100 0
Q ss_pred hHHHHHHHHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH-
Q 000169 1207 WLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK- 1277 (1953)
Q Consensus 1207 ~l~eEek~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ek- 1277 (1953)
+.........+.+...|+.. ++.+-+.-+. .+....+|. ..| .+..-+.+.+...-.+.+......
T Consensus 279 -ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV---~dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~ 353 (830)
T PRK12904 279 -LYDPENIALVHHLNQALRAHELFKRDVDYIV---KDGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTL 353 (830)
T ss_pred -ccChhhhHHHHHHHHHHHHHHHHhcCCcEEE---ECCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceee
Confidence 00001111223333344332 3333222221 112222221 121 233444455544332222211100
Q ss_pred -----hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccc-----chhhhhhcccHHHHHHHHHHHHHhcCCee
Q 000169 1278 -----RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRV 1347 (1953)
Q Consensus 1278 -----~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dl-----s~d~Li~~SGKLelLdrIL~kLkatGhKV 1347 (1953)
...+...................|.++-+-+.+.-|..... ..........|+..+...+.++...+..|
T Consensus 354 a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpV 433 (830)
T PRK12904 354 ASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPV 433 (830)
T ss_pred eeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCE
Confidence 00000000000001111222356777776665544432211 11112234468899999998888899999
Q ss_pred EEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccC-----------
Q 000169 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA----------- 1416 (1953)
Q Consensus 1348 LIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaA----------- 1416 (1953)
||||......+.|...|...|+++..|+|. ..+|+..|..|....+. ++|+|+.+|+|+|+.-.
T Consensus 434 LIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~ 508 (830)
T PRK12904 434 LVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALL 508 (830)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhh
Confidence 999999999999999999999999999995 67999999999865554 89999999999997643
Q ss_pred ---------------------------CeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1417 ---------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1417 ---------------------------DtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
=+||.-..+-|-..+.|..||++|.|.......|. ++|+.+..
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l--SleD~l~~ 578 (830)
T PRK12904 509 EEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL--SLEDDLMR 578 (830)
T ss_pred hhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE--EcCcHHHH
Confidence 48899999999999999999999999998886653 45555543
No 106
>COG4889 Predicted helicase [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=179.44 Aligned_cols=157 Identities=21% Similarity=0.244 Sum_probs=101.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-Psl 1076 (1953)
.+|||||..++....+.+..+-+|=|-+.+|+|||.+++-+...+.. .++|++||.- ||.|-.+|...-. -.+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 48999999999999999888888878888999999999888776653 5789999964 7777443332211 011
Q ss_pred e-EEEEecchhhH------------------hHHH---HHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEccccc
Q 000169 1077 S-CIYYVGAKDQR------------------SRLF---SQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1077 k-Vvvy~Gs~deR------------------k~l~---~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAH 1132 (1953)
. ..++...+-.| ..++ .......+.-||++||+.+-.- .....--.|++||+||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 1 11211111100 0111 1112345667999999988543 333444579999999999
Q ss_pred ccCC------chhHHHHHh--hhcccceeEEecccC
Q 000169 1133 RMKD------RESVLARDL--DRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1133 rLKN------~~SKlsraL--k~L~a~~RLLLTGTP 1160 (1953)
|--. ..+..++.- ..+++..||.+||||
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9743 122222211 134667899999999
No 107
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.55 E-value=8.2e-14 Score=147.32 Aligned_cols=166 Identities=28% Similarity=0.314 Sum_probs=117.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHCCC-
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWLPS- 1075 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~KwaPs- 1075 (1953)
..++++||.+++.++.... .++++..++|+|||..++.++...+.. ....++||++| ..++.+|..++.++++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKR-GKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcc-cCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3579999999999887521 688999999999999888877776643 22468999999 55889999999999876
Q ss_pred --CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCC-c-hhHHHHHhhhc-
Q 000169 1076 --VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD-R-ESVLARDLDRY- 1148 (1953)
Q Consensus 1076 --lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN-~-~SKlsraLk~L- 1148 (1953)
.....+.+..... .. ........+|+++||+.+...... +...+|+++||||+|.+.+ . ...+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 82 GLKVVGLYGGDSKRE-QL--RKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred CeEEEEEeCCcchHH-HH--HHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 3344444433211 11 123334459999999999876544 4556789999999999985 3 33333344444
Q ss_pred ccceeEEecccCCCCCHHHHHH
Q 000169 1149 RCQRRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1149 ~a~~RLLLTGTPLQNnL~ELwS 1170 (1953)
...+++++||||..+.-...+.
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred ccceEEEEecCCchhHHHHHHH
Confidence 5778999999997444333333
No 108
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=7.9e-14 Score=164.38 Aligned_cols=306 Identities=19% Similarity=0.225 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-HHHHCC--CCeE
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-LHKWLP--SVSC 1078 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E-f~KwaP--slkV 1078 (1953)
-..|..++-=++. +.+.+.-...|+|||.+....++..+.......-+||++|.+.+.+...+ +..|.. +..+
T Consensus 50 SaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v 125 (397)
T KOG0327|consen 50 SAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSV 125 (397)
T ss_pred hHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceee
Confidence 3457777655554 78888888899999999777666655433333467999999977664444 444443 3455
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCC--chhHHHHHhhhcccc-ee
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ-RR 1153 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L~a~-~R 1153 (1953)
....|....+.. ...+.....+|++.|++.+..- ...|......+.|+||+..++. ...+++..+.+++.+ ..
T Consensus 126 ~~~igg~~~~~~--~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv 203 (397)
T KOG0327|consen 126 HACIGGTNVRRE--DQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQV 203 (397)
T ss_pred eeecCcccchhh--hhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhh
Confidence 555554443322 1234456689999999887543 3356666789999999999864 344556666666443 45
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000169 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (1953)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlK 1233 (1953)
+++|||- +.++. +-++
T Consensus 204 ~l~SAT~----p~~vl------------------------------------------------------------~vt~ 219 (397)
T KOG0327|consen 204 VLLSATM----PSDVL------------------------------------------------------------EVTK 219 (397)
T ss_pred eeecccC----cHHHH------------------------------------------------------------HHHH
Confidence 6667763 01100 0000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000169 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313 (1953)
Q Consensus 1234 kDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p 1313 (1953)
+. +... ..+.++-.+.+.+ . .+ +-|..
T Consensus 220 ~f-----~~~p-v~i~vkk~~ltl~---g--------------------------------------ik----q~~i~-- 246 (397)
T KOG0327|consen 220 KF-----MREP-VRILVKKDELTLE---G--------------------------------------IK----QFYIN-- 246 (397)
T ss_pred Hh-----ccCc-eEEEecchhhhhh---h--------------------------------------ee----eeeee--
Confidence 00 0000 0000000000000 0 00 00000
Q ss_pred CccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcC
Q 000169 1314 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (1953)
Q Consensus 1314 ~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ 1393 (1953)
... ..|+..|..+.. .-...+|||+...-++.|.+.|..+++....++|.+...+|..++++|+.+
T Consensus 247 ----v~k------~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g 312 (397)
T KOG0327|consen 247 ----VEK------EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG 312 (397)
T ss_pred ----ccc------cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC
Confidence 000 116666666665 345689999999999999999999999999999999999999999999988
Q ss_pred CCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1394 ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
.+. +|++|+..++|+|++.++.||+||.|-|...|++++||++|.|-+.-+
T Consensus 313 ssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~ 363 (397)
T KOG0327|consen 313 SSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVA 363 (397)
T ss_pred Cce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCcee
Confidence 777 899999999999999999999999999999999999999999976544
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.54 E-value=3.2e-13 Score=173.34 Aligned_cols=118 Identities=22% Similarity=0.204 Sum_probs=104.6
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
..+++..|...|..+...+.+|||||.....++.|.++|...|+++..+||.++..+|.++++.|+.+.. .+|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i---~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF---DVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc---eEEEEcC
Confidence 3567777777788778889999999999999999999999999999999999999999999999986443 3688999
Q ss_pred ccccccCCccCCeEEEcC-----CCCCchhHHhhhhcccccCCcceE
Q 000169 1406 AAGRGLNLQSADTVIIYD-----PDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifD-----ppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
.+++|++++.+++||++| .+-+...|+|++||++|.. ...|
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G~v 546 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKV 546 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CCEE
Confidence 999999999999999999 5668899999999999974 4444
No 110
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.51 E-value=1.7e-13 Score=136.73 Aligned_cols=136 Identities=24% Similarity=0.311 Sum_probs=100.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHHHHHHHCC-CCeEEEEecchhhHhHHHHHHHhh
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKSELHKWLP-SVSCIYYVGAKDQRSRLFSQEVAA 1098 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-QW~~Ef~KwaP-slkVvvy~Gs~deRk~l~~qei~~ 1098 (1953)
+++|.+++|+|||.+++.++..+... ...+++||+||...+. +|...+.++.. ...+.++.+........ ....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 77 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLS 77 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhc
Confidence 67999999999999999999888763 4567999999988555 45666777775 56666666655443322 2235
Q ss_pred ccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCchhHHH---HHhhhcccceeEEecccC
Q 000169 1099 LKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRESVLA---RDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~~SKls---raLk~L~a~~RLLLTGTP 1160 (1953)
...+|+|+||+.+...... +....|++|||||+|.+.+...... .........++++|||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 6789999999988765433 2345799999999999987655443 333445777899999998
No 111
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.51 E-value=2.5e-12 Score=168.07 Aligned_cols=305 Identities=19% Similarity=0.248 Sum_probs=208.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~KwaPsl 1076 (1953)
+-.|-|+.+++-...=...+. .-+||-++|-|||=+|+-.+-.. -...+.+.|+||+.+| .|..+.|...|.++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA---V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~f 670 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA---VMDGKQVAVLVPTTLLAQQHYETFKERFAGF 670 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH---hcCCCeEEEEcccHHhHHHHHHHHHHHhcCC
Confidence 566889999988876554433 34899999999998875433221 2334689999999865 45677787777665
Q ss_pred eEEEEe----cchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccc-
Q 000169 1077 SCIYYV----GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ- 1151 (1953)
Q Consensus 1077 kVvvy~----Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~- 1151 (1953)
.|-+-. -+..+.+.++ .....+..||||.|+..+.++..+ .+..+|||||=||+. -+.-..|+.+++.
T Consensus 671 PV~I~~LSRF~s~kE~~~il-~~la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFG---Vk~KEkLK~Lr~~V 743 (1139)
T COG1197 671 PVRIEVLSRFRSAKEQKEIL-KGLAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFG---VKHKEKLKELRANV 743 (1139)
T ss_pred CeeEEEecccCCHHHHHHHH-HHHhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcC---ccHHHHHHHHhccC
Confidence 444422 2333444443 357789999999999988776443 367899999999984 3344567777665
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..|-||||||..+|.= +|. ++ +.|.-+
T Consensus 744 DvLTLSATPIPRTL~M--sm~-----Gi--------------------------------------RdlSvI-------- 770 (1139)
T COG1197 744 DVLTLSATPIPRTLNM--SLS-----GI--------------------------------------RDLSVI-------- 770 (1139)
T ss_pred cEEEeeCCCCcchHHH--HHh-----cc--------------------------------------hhhhhc--------
Confidence 5888999999887431 110 00 000000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
.-||.....|..-..+..
T Consensus 771 -------~TPP~~R~pV~T~V~~~d------------------------------------------------------- 788 (1139)
T COG1197 771 -------ATPPEDRLPVKTFVSEYD------------------------------------------------------- 788 (1139)
T ss_pred -------cCCCCCCcceEEEEecCC-------------------------------------------------------
Confidence 123333222221111100
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHHH
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqeaIer 1389 (1953)
...+-+.|++++ ..|..|...++.+..+..+...|+.. ..++...||.|+..+-++++..
T Consensus 789 -----------------~~~ireAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~ 850 (1139)
T COG1197 789 -----------------DLLIREAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLD 850 (1139)
T ss_pred -----------------hHHHHHHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHH
Confidence 001112334444 35667777778888888888888765 5678889999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCC-CCchhHHhhhhcccccCCcceEEEE
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp-WNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
|.+++-+ +|+||-....|||+++|||+|+-+.| +-.++..|--||++|-...--++..
T Consensus 851 F~~g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl 909 (1139)
T COG1197 851 FYNGEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFL 909 (1139)
T ss_pred HHcCCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEe
Confidence 9976666 79999999999999999999999998 7899999999999998765544433
No 112
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.48 E-value=6.2e-14 Score=132.40 Aligned_cols=78 Identities=32% Similarity=0.543 Sum_probs=73.9
Q ss_pred HHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc
Q 000169 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1362 d~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI 1441 (1953)
.+|+..|+.+..+||+++.++|..+++.|+.++.. +|++|.++++|||++.+++||+||++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 46889999999999999999999999999986664 899999999999999999999999999999999999999999
Q ss_pred C
Q 000169 1442 G 1442 (1953)
Q Consensus 1442 G 1442 (1953)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 113
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.48 E-value=8.8e-13 Score=172.81 Aligned_cols=310 Identities=18% Similarity=0.178 Sum_probs=216.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPslkV 1078 (1953)
..||-|.++|.-.+. +..+++-..||.||.+....... -..|-+|||.|+ +|+.....-+.+ .++..
T Consensus 264 ~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~------l~~gitvVISPL~SLm~DQv~~L~~--~~I~a 331 (941)
T KOG0351|consen 264 GFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPAL------LLGGVTVVISPLISLMQDQVTHLSK--KGIPA 331 (941)
T ss_pred cCChhHHHHHHHHHc----CCceEEEeecCCceeeEeecccc------ccCCceEEeccHHHHHHHHHHhhhh--cCcce
Confidence 689999999985554 77889999999999966532221 123478999996 466655555533 34555
Q ss_pred EEEecchhh--HhHHHHHHHhhc--cccEEEEeHHHHHhhhhcc---c-cc---CccEEEcccccccCC-------chhH
Q 000169 1079 IYYVGAKDQ--RSRLFSQEVAAL--KFNVLVTTYEFIMYDRSKL---S-KV---DWKYIIIDEAQRMKD-------RESV 1140 (1953)
Q Consensus 1079 vvy~Gs~de--Rk~l~~qei~~~--~fdVVITTYEsL~kd~s~L---~-ki---kWd~VIIDEAHrLKN-------~~SK 1140 (1953)
....+.... +..++ +.+..+ ..+|+..|++.+......+ . .. -..++||||||.+.. ...+
T Consensus 332 ~~L~s~q~~~~~~~i~-q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~ 410 (941)
T KOG0351|consen 332 CFLSSIQTAAERLAIL-QKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKR 410 (941)
T ss_pred eeccccccHHHHHHHH-HHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHH
Confidence 555554433 33333 234455 7899999999997653221 1 11 268999999998753 2223
Q ss_pred HHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000169 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (1953)
Q Consensus 1141 lsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RL 1220 (1953)
+......+..-..|+||||-...--.|+...|++-.|.+|.+ -|+.+
T Consensus 411 l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR~--------------------------- 457 (941)
T KOG0351|consen 411 LGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNRP--------------------------- 457 (941)
T ss_pred HHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCCC---------------------------
Confidence 333333455556899999988888888888888877765432 12211
Q ss_pred HHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000169 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (1953)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmq 1300 (1953)
....-|.-+.+ . ..+...+..
T Consensus 458 ----------------------NL~yeV~~k~~--~-----------------------------------~~~~~~~~~ 478 (941)
T KOG0351|consen 458 ----------------------NLKYEVSPKTD--K-----------------------------------DALLDILEE 478 (941)
T ss_pred ----------------------CceEEEEeccC--c-----------------------------------cchHHHHHH
Confidence 00111111000 0 000000011
Q ss_pred HHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCH
Q 000169 1301 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1380 (1953)
Q Consensus 1301 LRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~ 1380 (1953)
. +....+...||||.....++.+...|...|+....+|.+++.
T Consensus 479 ~-------------------------------------~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 479 S-------------------------------------KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPP 521 (941)
T ss_pred h-------------------------------------hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCH
Confidence 1 112345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
.+|..+-..|..+... ++++|=|.|-|||-+++..||+|..|-+..-|.|-.|||+|-|+...|..||=..
T Consensus 522 ~~R~~Vq~~w~~~~~~---VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 522 KERETVQKAWMSDKIR---VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHHhcCCCe---EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999975533 7889999999999999999999999999999999999999999999988877543
No 114
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.48 E-value=7.5e-12 Score=145.82 Aligned_cols=309 Identities=17% Similarity=0.193 Sum_probs=205.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 997 ~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
-.|+|.|+|..+-+-++..+.+...-|+..-+|.|||-+....|.+.+. ..+.+.|..|.- ++..-...+..-|++
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhcc
Confidence 3689999999999999999999999999999999999888888877664 456788888954 676677778888888
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccC-CchhHHHHHhhhc--ccce
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK-DRESVLARDLDRY--RCQR 1152 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLK-N~~SKlsraLk~L--~a~~ 1152 (1953)
..+...+|..+..- ...+||+|-..+.+-. ..||+|||||.+.+- ..+-.+..++..- ....
T Consensus 171 ~~I~~Lyg~S~~~f----------r~plvVaTtHQLlrFk-----~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 171 CDIDLLYGDSDSYF----------RAPLVVATTHQLLRFK-----QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred CCeeeEecCCchhc----------cccEEEEehHHHHHHH-----hhccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 77777777654321 1345555544444332 368999999999873 1222344444432 2345
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH-HHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLRR 1231 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP-FmLRR 1231 (1953)
.|.|||||... +..... +.-+.+ .+-+|
T Consensus 236 ~IylTATp~k~----------------------l~r~~~-----------------------------~g~~~~~klp~R 264 (441)
T COG4098 236 TIYLTATPTKK----------------------LERKIL-----------------------------KGNLRILKLPAR 264 (441)
T ss_pred eEEEecCChHH----------------------HHHHhh-----------------------------hCCeeEeecchh
Confidence 89999999311 111000 000000 01111
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
.-. +.||-. ..+++. .+-+. +
T Consensus 265 fH~---~pLpvP--kf~w~~--~~~k~---------------------------------------l------------- 285 (441)
T COG4098 265 FHG---KPLPVP--KFVWIG--NWNKK---------------------------------------L------------- 285 (441)
T ss_pred hcC---CCCCCC--ceEEec--cHHHH---------------------------------------h-------------
Confidence 111 123221 222221 00000 0
Q ss_pred CCCccccchhhhhhcccHHH-HHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CC-eEEeecCCCCHHHHHHHHH
Q 000169 1312 YPYFSDLSKDFLVKSCGKLW-ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QL-VYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLe-lLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-Gi-kylRLDGsTs~eeRqeaIe 1388 (1953)
.-.|+. .|.++|.+...+|.-||||.....+++-+...|+.. +. ....++..+ ..|.+.++
T Consensus 286 --------------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~ 349 (441)
T COG4098 286 --------------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVE 349 (441)
T ss_pred --------------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHH
Confidence 001222 467788888899999999999999999999998432 22 234455544 57999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCC--CCchhHHhhhhcccccCC--cceEEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD--PNPKNEEQAVARAHRIGQ--KREVKVIYM 1452 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp--WNP~~d~QAiGRAhRIGQ--KKeV~VyrL 1452 (1953)
.|+++... +|++|....+|+.++.+|++++=.-. ++-...+|--||++|--. +.+|..|.+
T Consensus 350 ~fR~G~~~---lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 350 AFRDGKIT---LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHcCceE---EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 99986555 89999999999999999999885554 899999999999999643 355666665
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=1.9e-11 Score=158.12 Aligned_cols=419 Identities=16% Similarity=0.214 Sum_probs=234.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~KwaPs 1075 (1953)
..++-|+-|---|. .|-|.-..||.|||++++..+ ++....+ ..++||+|+.-|. .|...|.+|+ +
T Consensus 82 ~~ydVQliGgl~L~------~G~IaEm~TGEGKTL~a~lp~-~l~al~g--~~VhIvT~ndyLA~RD~e~m~~l~~~l-G 151 (908)
T PRK13107 82 RHFDVQLLGGMVLD------SNRIAEMRTGEGKTLTATLPA-YLNALTG--KGVHVITVNDYLARRDAENNRPLFEFL-G 151 (908)
T ss_pred CcCchHHhcchHhc------CCccccccCCCCchHHHHHHH-HHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 34455887754442 355778899999999875544 3332222 3589999988553 4888888886 5
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHH----hhh-----hcccccCccEEEcccccccCCchhHHHHHhh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM----YDR-----SKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~----kd~-----s~L~kikWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
++|-+..+...... ......++|+++|...|- ++. ..+....+.++||||++.+.-.
T Consensus 152 lsv~~i~~~~~~~~-----r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD--------- 217 (908)
T PRK13107 152 LTVGINVAGLGQQE-----KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID--------- 217 (908)
T ss_pred CeEEEecCCCCHHH-----HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc---------
Confidence 66665555433211 122346799999987762 221 1112257889999999987532
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHhhhcccccCC----hHHHHh--hhcCCcccCCCCCCCChh--------------
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN----RKAFHD--WFSQPFQKEGPTHNADDD-------------- 1206 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S----~k~F~e--~F~kPf~k~g~~~~~e~d-------------- 1206 (1953)
.++.-|++||.+ ... .++|..++.+...+... .+.|.. .|...- ......-++..
T Consensus 218 --EArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~ide-k~~~v~LTe~G~~~~e~~l~~~~~~ 292 (908)
T PRK13107 218 --EARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDE-KAKQVHFTERGQEKVENLLIERGML 292 (908)
T ss_pred --cCCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEec-CCCeeeechHHHHHHHHHHHhCCcc
Confidence 233457788854 332 45665554332211100 000000 000000 00000000000
Q ss_pred ----hHHHHHHHHHHHHHHHHhhHHHH-HHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCch
Q 000169 1207 ----WLETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPE 1274 (1953)
Q Consensus 1207 ----~l~eEek~liI~RLhklLrPFmL-RRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~ 1274 (1953)
.+........++.+...|+.+.+ .|-+.-|-. +....+|. ..| -+.--+.+.+...-.+.+...
T Consensus 293 ~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~IVD-e~TGRim~grrwsdGLHQaIEaKE~v~I~~e 368 (908)
T PRK13107 293 AEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQ---DNEVIIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVHIQNE 368 (908)
T ss_pred cCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHHhcCCCCCCC
Confidence 00000001122333334443332 221111111 11111111 111 233344444443322222211
Q ss_pred hHHhhhhcChhhH--HHHHHHH-------HHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHH
Q 000169 1275 DEKRRVQKNPIYQ--AKVYKTL-------NNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKL 1340 (1953)
Q Consensus 1275 ~ek~~l~kn~~~~--ak~~~sL-------~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kL 1340 (1953)
.. .+..- .++ .+.|..| ......|.++.+-+.+..|.... ...........|+..+..-+..+
T Consensus 369 ~~--t~AsI-T~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~ 445 (908)
T PRK13107 369 NQ--TLASI-TFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDC 445 (908)
T ss_pred ce--eeeee-hHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHH
Confidence 10 00000 000 0011111 11223566666655554443221 11112233457888888888888
Q ss_pred HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc-----
Q 000169 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS----- 1415 (1953)
Q Consensus 1341 katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa----- 1415 (1953)
.+.|..|||||......+.|..+|...|+++..|++.....+|..+...|+.+. ++|+|+.+|+|+|+.=
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATnmAGRGTDIkLggn~~ 520 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATNMAGRGTDIVLGGNWN 520 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecCCcCCCcceecCCchH
Confidence 999999999999999999999999999999999999999999999999998633 8999999999999762
Q ss_pred --------------------------------CCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1416 --------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1416 --------------------------------ADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
-=+||.-..+-|-..+.|..||++|.|.......| +++|+.+++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~--lSlED~L~r 596 (908)
T PRK13107 521 MEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY--LSMEDSLMR 596 (908)
T ss_pred HhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE--EEeCcHHHH
Confidence 24899999999999999999999999999887654 345555543
No 116
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=3.6e-13 Score=159.47 Aligned_cols=320 Identities=21% Similarity=0.263 Sum_probs=210.6
Q ss_pred hhhHHhhhhhhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEe
Q 000169 979 YSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIV 1057 (1953)
Q Consensus 979 y~lah~i~E~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVV 1057 (1953)
|.+..+|.++...+|. |.|.+.+.-+++ +....--.-||+|||...+..+..-+.... ..-+.||+.
T Consensus 30 ~~v~raI~kkg~~~pt--------piqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralils 97 (529)
T KOG0337|consen 30 YKVLRAIHKKGFNTPT--------PIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILS 97 (529)
T ss_pred HHHHHHHHHhhcCCCC--------chhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeecc
Confidence 3455566666666553 556666655554 333334456999999888765554433222 223789999
Q ss_pred chH-HHHH---HHHHHHHHCCCCeEE-EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEccc
Q 000169 1058 PNA-VLVN---WKSELHKWLPSVSCI-YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDE 1130 (1953)
Q Consensus 1058 P~S-LL~Q---W~~Ef~KwaPslkVv-vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDE 1130 (1953)
|+. |..| ...++.+++ .+++. .|+|..-+.. . .....+.||||+|+..+..-.. .|.--...|||+||
T Consensus 98 ptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeq-f---~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQ-F---ILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDE 172 (529)
T ss_pred CcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHH-H---HHhccCCCEEEecCceeeeeehheeccccceeeeeehh
Confidence 987 4444 334444443 34444 5555443321 1 1223578999999998864321 13334578999999
Q ss_pred ccccCC--chhHHHHHhhhcccc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000169 1131 AQRMKD--RESVLARDLDRYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (1953)
Q Consensus 1131 AHrLKN--~~SKlsraLk~L~a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~ 1207 (1953)
+.++-. ..-.+.+.+.++... ..+++|||- .+. |..|... |
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~------lv~faka--------------------G--------- 216 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRD------LVDFAKA--------------------G--------- 216 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chh------hHHHHHc--------------------c---------
Confidence 999853 456778888888654 478999984 111 1111110 0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000169 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ 1287 (1953)
+..|.++| -||+.. .++.
T Consensus 217 ---------------l~~p~lVR---ldvetk------------ise~-------------------------------- 234 (529)
T KOG0337|consen 217 ---------------LVPPVLVR---LDVETK------------ISEL-------------------------------- 234 (529)
T ss_pred ---------------CCCCceEE---eehhhh------------cchh--------------------------------
Confidence 01111111 111110 0000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc
Q 000169 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (1953)
Q Consensus 1288 ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r 1367 (1953)
.+.+ .+.++...|...|..|+..... .++.+||+....+++++...|+..
T Consensus 235 -----------lk~~------------------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~ 284 (529)
T KOG0337|consen 235 -----------LKVR------------------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDF 284 (529)
T ss_pred -----------hhhh------------------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhc
Confidence 0000 0112234566777777766432 568999999999999999999999
Q ss_pred CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcce
Q 000169 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1368 GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
|+....+.|++....|..-+.+|+..... +|+.|+++.+|+|++--|+||+||.|-.+..+++|+||+.|.|.+..
T Consensus 285 g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~ 360 (529)
T KOG0337|consen 285 GGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGR 360 (529)
T ss_pred CCCccccccccChHhhhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccce
Confidence 99999999999999999999999976655 89999999999999999999999999999999999999999997754
No 117
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.46 E-value=4.3e-12 Score=169.78 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=84.0
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCe---EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGik---ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
....+|||+.....++.+.+.|...++. ++.|+|+++.++|..+++.+ + .+-+|++|+++++||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g-~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----S-GRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----C-CeeEEEeccHHhhccccCcceEE
Confidence 4567999999999999999999988775 66799999999999887653 2 24479999999999999999999
Q ss_pred EEcC---------------CCCCc---hhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 IIYD---------------PDPNP---KNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 IifD---------------ppWNP---~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.++ .+..| ..+.||.||++|.+ . =.+|+|++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~-~--G~c~rLyt 409 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS-E--GICIRLYS 409 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC-C--cEEEEeCC
Confidence 9985 23333 67999999999994 2 23445544
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.46 E-value=1.4e-11 Score=158.88 Aligned_cols=118 Identities=22% Similarity=0.241 Sum_probs=103.9
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
..+++..|...|..+...+.+|||||.....++.|.++|...|+++..+||.++..+|..++..|+.+.. .+|++|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i---~vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF---DVLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCc---eEEEEeC
Confidence 3467777778888888889999999999999999999999999999999999999999999999986443 3688999
Q ss_pred ccccccCCccCCeEEEcCC-----CCCchhHHhhhhcccccCCcceE
Q 000169 1406 AAGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDp-----pWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
.+++|++++.+++||++|. +-++..|+|++||++|- ....|
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~ 550 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKV 550 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEE
Confidence 9999999999999999997 46889999999999994 34443
No 119
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=2.6e-10 Score=147.99 Aligned_cols=156 Identities=16% Similarity=0.231 Sum_probs=114.6
Q ss_pred HHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEe
Q 000169 1299 MELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylR 1373 (1953)
..|.++.+.+.+..|.... ...........|...+..-+..+...|..|||-|.+...-+.|...|...|+++..
T Consensus 518 ~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~v 597 (970)
T PRK12899 518 REFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTV 597 (970)
T ss_pred HHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCccee
Confidence 4566766666554443322 11122233357888888878888889999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccC--------CeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1374 LDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaA--------DtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
|+.... +.-..+|.+- + ..-.+.|+|..+|+|.|+.-. =+||.-..+-|...+.|..||++|.|...
T Consensus 598 LNak~~-~~Ea~iia~A--G--~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpG 672 (970)
T PRK12899 598 LNAKNH-AQEAEIIAGA--G--KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPG 672 (970)
T ss_pred cccchh-hhHHHHHHhc--C--CCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCC
Confidence 988633 3333455433 2 223489999999999997643 38899999999999999999999999998
Q ss_pred eEEEEEEehhhhhhhh
Q 000169 1446 EVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~s 1461 (1953)
....| +++++.+..
T Consensus 673 ss~f~--lSlEDdL~~ 686 (970)
T PRK12899 673 AAKFF--LSFEDRLMR 686 (970)
T ss_pred ceeEE--EEcchHHHH
Confidence 87654 345555544
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=2.8e-10 Score=148.09 Aligned_cols=129 Identities=19% Similarity=0.261 Sum_probs=111.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
...|+..|...+..+...+..|||||.++...+.|..+|...|+++..|++ +..+|+..|..|....+. ++|+|+
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEecc
Confidence 346889999999888889999999999999999999999999999999997 678999999999865544 899999
Q ss_pred ccccccCCccCC--------eEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1406 AAGRGLNLQSAD--------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1406 AGGeGLNLQaAD--------tVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
.+|+|+|+.-.+ +||.++.+-+...|.|++||++|.|....... |++.++.+.+
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fvSleD~Lmr 716 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YVSLEDELMR 716 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--EechhHHHHH
Confidence 999999999433 45899999999999999999999999988743 3455555544
No 121
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.39 E-value=2.1e-11 Score=144.31 Aligned_cols=322 Identities=16% Similarity=0.159 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEE
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYY 1081 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy 1081 (1953)
+.|..++.-++. .+....++.+||.||++..-... |+. .|-++||.|.- |+....+-+.+.--....+--
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPa--L~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPA--LVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchH--HHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 678888887775 34557899999999997653322 221 24678888865 666666666654211111112
Q ss_pred ecchhhHhHHHHHH-HhhccccEEEEeHHHHHhh-----hhcc-cccCccEEEcccccccCC------chhHHHHHhhh-
Q 000169 1082 VGAKDQRSRLFSQE-VAALKFNVLVTTYEFIMYD-----RSKL-SKVDWKYIIIDEAQRMKD------RESVLARDLDR- 1147 (1953)
Q Consensus 1082 ~Gs~deRk~l~~qe-i~~~~fdVVITTYEsL~kd-----~s~L-~kikWd~VIIDEAHrLKN------~~SKlsraLk~- 1147 (1953)
.-+..+|.+++... .......++.+|++....+ ...| ......|+||||||.+-- +.....-.|+.
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 23445666665432 2244556888888876433 2222 234578999999998742 22222233332
Q ss_pred cccceeEEecccCCCCCHHHHHHHHhhhccc-ccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000169 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPE-VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~-iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrP 1226 (1953)
+..---+.||||--..--+|++..|.+-.|- +|.+ ..|...+
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~NL------------------------------------ 216 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRDNL------------------------------------ 216 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhhhh------------------------------------
Confidence 2233468899998777788888888877662 2221 1121110
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcC
Q 000169 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (1953)
Q Consensus 1227 FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCN 1306 (1953)
+|+...... +..-+..|.-.|.
T Consensus 217 --------------------------------FYD~~~K~~--------------------------I~D~~~~LaDF~~ 238 (641)
T KOG0352|consen 217 --------------------------------FYDNHMKSF--------------------------ITDCLTVLADFSS 238 (641)
T ss_pred --------------------------------hHHHHHHHH--------------------------hhhHhHhHHHHHH
Confidence 011000000 0000000111111
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqea 1386 (1953)
|-+-....+.+. . +.-...-||||..++..+.|+-.|..+||....+|.+.+..+|..+
T Consensus 239 ~~LG~~~~~~~~---------~------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 239 SNLGKHEKASQN---------K------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred HhcCChhhhhcC---------C------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 110000000000 0 0112346999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
-+.|-.++.+ +|++|-..|.|+|-+++..||+.|++-|..-|.|--|||+|-|-..-|+.||-
T Consensus 298 Qe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 298 QEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred HHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 9999877766 78999999999999999999999999999999999999999999889999985
No 122
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.39 E-value=1.3e-11 Score=150.01 Aligned_cols=309 Identities=20% Similarity=0.192 Sum_probs=200.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHH-HHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--C
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQV-MALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--S 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQA-IALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~KwaP--s 1075 (1953)
+|.|-|..+|..-+ -++.|-++...|++|||+++ +|-|..++ ...+++|++||.-.+.| =.++|.+.+. +
T Consensus 216 eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg 289 (830)
T COG1202 216 ELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPLVALANQKYEDFKERYSKLG 289 (830)
T ss_pred eecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehhHHhhcchHHHHHHHhhccc
Confidence 79999999886432 24677799999999999876 44444444 34578999999875555 5567877664 3
Q ss_pred CeEEEEecchhhHhHHH-HHHHhhccccEEEEeHHHHH---hhhhcccccCccEEEcccccccCC--chhHHHHH---hh
Q 000169 1076 VSCIYYVGAKDQRSRLF-SQEVAALKFNVLVTTYEFIM---YDRSKLSKVDWKYIIIDEAQRMKD--RESVLARD---LD 1146 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~-~qei~~~~fdVVITTYEsL~---kd~s~L~kikWd~VIIDEAHrLKN--~~SKlsra---Lk 1146 (1953)
+++.+-.|....+..-- .......+.||+|.||+-+- +.-..+ .+...|||||.|.+.. ....+--. |+
T Consensus 290 lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~l--gdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 290 LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDL--GDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcc--cccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 55556666554332210 00123567899999998653 322222 3678999999999975 22333222 33
Q ss_pred hc-ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000169 1147 RY-RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (1953)
Q Consensus 1147 ~L-~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLr 1225 (1953)
.+ .....+.||||- .|+.||..-|+.-.. .
T Consensus 368 ~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV-----------------~------------------------------ 398 (830)
T COG1202 368 YLFPGAQFIYLSATV--GNPEELAKKLGAKLV-----------------L------------------------------ 398 (830)
T ss_pred HhCCCCeEEEEEeec--CChHHHHHHhCCeeE-----------------e------------------------------
Confidence 33 345688999994 455555443331100 0
Q ss_pred HHHHHHHHhhhhcCCCC-ceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1226 PFMLRRRVEDVEGSLPP-KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1226 PFmLRRlKkDVekdLPp-KvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
-..-|- ...++++|.=..
T Consensus 399 -----------y~~RPVplErHlvf~~~e~-------------------------------------------------- 417 (830)
T COG1202 399 -----------YDERPVPLERHLVFARNES-------------------------------------------------- 417 (830)
T ss_pred -----------ecCCCCChhHeeeeecCch--------------------------------------------------
Confidence 001121 122333332111
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHH----HhcCC--eeEEeechhHHHHHHHHHHHHcCCeEEeecCCC
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL----QRTGH--RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kL----katGh--KVLIFSQft~~LDILed~L~~rGikylRLDGsT 1378 (1953)
.|..++.+++..- ...|. .+|||+..+.-+..|+++|..+|++...+|+++
T Consensus 418 -----------------------eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL 474 (830)
T COG1202 418 -----------------------EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGL 474 (830)
T ss_pred -----------------------HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCC
Confidence 0111111111110 12233 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cCCCC-CchhHHhhhhcccccCCcceEEEEEEe
Q 000169 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDPDP-NPKNEEQAVARAHRIGQKREVKVIYME 1453 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fDppW-NP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (1953)
+..+|..+-..|.+.+.. .+++|.|.+-|+|+++. .||| +...| +|..+.|..|||+|.+=...=.||.++
T Consensus 475 ~y~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllv 550 (830)
T COG1202 475 PYKERKSVERAFAAQELA---AVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLV 550 (830)
T ss_pred cHHHHHHHHHHHhcCCcc---eEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEe
Confidence 999999999999976665 78999999999999954 4443 44455 999999999999999866444555553
No 123
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.37 E-value=2e-11 Score=163.96 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=84.3
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCC---eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGi---kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
....+|||+.....++.+.+.|...++ .++.++|+++.++|.++++.+. . +-|||+|+++.+||+++++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~----~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS----G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC----C-ceEEEeccHHHhccccCCeeEE
Confidence 346899999999999999999987754 5788999999999998865442 2 3479999999999999999999
Q ss_pred EEcCCC-----------------C-CchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 IIYDPD-----------------P-NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 IifDpp-----------------W-NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|.++.. | +-..+.||.||++|.| +=.+|+|.+
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyt 402 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYS 402 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecC
Confidence 998732 1 4468999999999998 333456655
No 124
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.36 E-value=1.7e-12 Score=120.87 Aligned_cols=81 Identities=36% Similarity=0.461 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcc
Q 000169 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438 (1953)
Q Consensus 1359 ILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRA 1438 (1953)
.|.++|...++.+..++|.++.++|..+++.|+.++. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4678888889999999999999999999999997554 5889999999999999999999999999999999999999
Q ss_pred cccC
Q 000169 1439 HRIG 1442 (1953)
Q Consensus 1439 hRIG 1442 (1953)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 125
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.34 E-value=1.7e-11 Score=129.87 Aligned_cols=156 Identities=23% Similarity=0.287 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--CeEE
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--VSCI 1079 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs--lkVv 1079 (1953)
|+|.+++.-+.. +.+.|+..++|+|||..++..+...+... ..+.+||+||.. ++.+-..++.+++.. +.+.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 799999987774 67789999999999999987776655433 445899999965 888888899999864 6777
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCc--hhHHHHHhhhc---ccce
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY---RCQR 1152 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L---~a~~ 1152 (1953)
.+.|........ ......+.+|+|+|++.+...... +.-.+.++|||||+|.+-.. .......+..+ ...+
T Consensus 77 ~~~~~~~~~~~~--~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQ--REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHH--HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccc--cccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 777655422111 112245789999999999866432 22234899999999999652 22233333333 3456
Q ss_pred eEEecccCCCCCHH
Q 000169 1153 RLLLTGTPLQNDLK 1166 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ 1166 (1953)
.+++||||- .++.
T Consensus 155 ~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 155 IILLSATLP-SNVE 167 (169)
T ss_dssp EEEEESSST-HHHH
T ss_pred EEEEeeCCC-hhHh
Confidence 999999996 4443
No 126
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.33 E-value=7e-11 Score=151.38 Aligned_cols=299 Identities=19% Similarity=0.180 Sum_probs=178.0
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHHHCC--CCeEEEEecc
Q 000169 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHKWLP--SVSCIYYVGA 1084 (1953)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~KwaP--slkVvvy~Gs 1084 (1953)
.|+.+.|.|+|.+||+|||..+...|+.++..+. +.-+++.|+|.. |...-.+.|.+-+. ++.|.-+.|.
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD 201 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGD 201 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCc
Confidence 4778899999999999999999888888776321 233789999965 55545555554444 6888888887
Q ss_pred hhhHhHHHHHHHhhccccEEEEeHHHHH---h----hhhcccccCccEEEcccccccCCchh-----HHHHHhhhc----
Q 000169 1085 KDQRSRLFSQEVAALKFNVLVTTYEFIM---Y----DRSKLSKVDWKYIIIDEAQRMKDRES-----VLARDLDRY---- 1148 (1953)
Q Consensus 1085 ~deRk~l~~qei~~~~fdVVITTYEsL~---k----d~s~L~kikWd~VIIDEAHrLKN~~S-----KlsraLk~L---- 1148 (1953)
...-+. ...+.+|+|||++.+- + +...+. ...+|||||.|-+..... ..++.++..
T Consensus 202 ~ql~~t------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessq 273 (1230)
T KOG0952|consen 202 TQLTKT------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQ 273 (1230)
T ss_pred chhhHH------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhh
Confidence 644321 2457899999998651 1 111122 467999999999976433 344444332
Q ss_pred ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1149 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1149 ~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
..-+.++||||- -|+.|+. .||........-.|...|. |.-
T Consensus 274 s~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~yR----------------------------------Pvp 314 (1230)
T KOG0952|consen 274 SMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRYR----------------------------------PVP 314 (1230)
T ss_pred hheEEEEeeccC--CCHHHHH---HHhcCCCccceeeeccccc----------------------------------ccc
Confidence 234678999993 1344443 3443333222233333221 110
Q ss_pred HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
|+ ....-.++.-...+....+ .
T Consensus 315 L~------------~~~iG~k~~~~~~~~~~~d-----------------------------------------~----- 336 (1230)
T KOG0952|consen 315 LT------------QGFIGIKGKKNRQQKKNID-----------------------------------------E----- 336 (1230)
T ss_pred ee------------eeEEeeecccchhhhhhHH-----------------------------------------H-----
Confidence 00 0000001000000000000 0
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc----CCeE-------------
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----QLVY------------- 1371 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r----Giky------------- 1371 (1953)
.+.++++ +....||.|+||+..+...--.+..|..+ |..-
T Consensus 337 ----------------------~~~~kv~-e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~e 393 (1230)
T KOG0952|consen 337 ----------------------VCYDKVV-EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKE 393 (1230)
T ss_pred ----------------------HHHHHHH-HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHH
Confidence 0112222 23457888999987766554444444332 2221
Q ss_pred ------EeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchh----------HHhhh
Q 000169 1372 ------RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN----------EEQAV 1435 (1953)
Q Consensus 1372 ------lRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~----------d~QAi 1435 (1953)
..-|.++...+|.-+=+.|..+..+ +|++|...+.|+||++--.+|-=..-|++.. .+|-.
T Consensus 394 lf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQif 470 (1230)
T KOG0952|consen 394 LFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIF 470 (1230)
T ss_pred HHHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHH
Confidence 2235567778888888889875554 7999999999999997666665555566654 68999
Q ss_pred hcccccCCc
Q 000169 1436 ARAHRIGQK 1444 (1953)
Q Consensus 1436 GRAhRIGQK 1444 (1953)
|||+|..=.
T Consensus 471 GRAGRPqFd 479 (1230)
T KOG0952|consen 471 GRAGRPQFD 479 (1230)
T ss_pred hccCCCCCC
Confidence 999998543
No 127
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.32 E-value=2.8e-11 Score=133.01 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=109.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh--CCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK--GNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k--g~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
.+++||.+++..+.. +.+.|++.++|+|||+.++..+...+... ...+.+|||||.. ++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999988776 77899999999999998665554444333 3445789999976 88889999888864
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch-h-HHHHHhhhcc-
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE-S-VLARDLDRYR- 1149 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~-S-KlsraLk~L~- 1149 (1953)
++.+..+.|........ .......+|+|+|.+.+.... ..+.-..++++||||+|.+.+.. . .+...+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQI---RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173 (203)
T ss_pred CceEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc
Confidence 57777777765543322 122357899999998776532 12223467899999999986543 1 2222333444
Q ss_pred cceeEEecccCC
Q 000169 1150 CQRRLLLTGTPL 1161 (1953)
Q Consensus 1150 a~~RLLLTGTPL 1161 (1953)
....+++||||-
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 456899999985
No 128
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.28 E-value=7.9e-10 Score=144.61 Aligned_cols=327 Identities=17% Similarity=0.124 Sum_probs=190.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHH-HHHHHHHHHHHCCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAV-LVNWKSELHKWLPSV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SL-L~QW~~Ef~KwaPsl 1076 (1953)
-..+++|..++++.......+..++|..+||.|||..++.+..++... .....+++.|.|..+ +..-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 356899999999999877766578999999999999999888887765 234567788889774 556777788877654
Q ss_pred eEEEE--ecchhhHhHHHHHH-----------HhhccccEEEEeHHHHHhhh------hcccccCccEEEcccccccCCc
Q 000169 1077 SCIYY--VGAKDQRSRLFSQE-----------VAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDR 1137 (1953)
Q Consensus 1077 kVvvy--~Gs~deRk~l~~qe-----------i~~~~fdVVITTYEsL~kd~------s~L~kikWd~VIIDEAHrLKN~ 1137 (1953)
.+... +|.....-...... ....-+.+.+++...+.... ..+..+-..++|+||+|-+-..
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 44443 55443321111100 00111222222222222110 1133345678999999998654
Q ss_pred -hhHH-HHHhhhc--ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHH
Q 000169 1138 -ESVL-ARDLDRY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213 (1953)
Q Consensus 1138 -~SKl-sraLk~L--~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek 1213 (1953)
.... ...+..+ .....|++|||+- ..|.+.+...+...+.
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~l~~~~~~~~~-------------- 397 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEKLKKALGKGRE-------------- 397 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHHHHHHHhcccc--------------
Confidence 2222 2222222 2456899999971 1111111100000000
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHH
Q 000169 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293 (1953)
Q Consensus 1214 ~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~s 1293 (1953)
.+ ...+ .|+
T Consensus 398 ---------------------~~---~~~~-----~~~------------------------------------------ 406 (733)
T COG1203 398 ---------------------VV---ENAK-----FCP------------------------------------------ 406 (733)
T ss_pred ---------------------ee---cccc-----ccc------------------------------------------
Confidence 00 0000 000
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEe
Q 000169 1294 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (1953)
Q Consensus 1294 L~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylR 1373 (1953)
.++.+.+......+... ... ..+......-...+.+|+|-|+.+..+..+...|+..+.+++.
T Consensus 407 ----------~~~e~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 407 ----------KEDEPGLKRKERVDVED------GPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred ----------cccccccccccchhhhh------hhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 00000000000000000 000 1112222333457899999999999999999999999888999
Q ss_pred ecCCCCHHHHHHHHHHhhcC-CCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccC--CcceEEEE
Q 000169 1374 IDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKREVKVI 1450 (1953)
Q Consensus 1374 LDGsTs~eeRqeaIerFNs~-ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIG--QKKeV~Vy 1450 (1953)
||+..+..+|.+.++.+..- ..+-..++|+|.+...|||+. .|.+|- -.--....+||.||++|-| ....+.|+
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 99999999999988865531 112234799999999999987 666663 1123456889999999999 45556665
Q ss_pred EE
Q 000169 1451 YM 1452 (1953)
Q Consensus 1451 rL 1452 (1953)
..
T Consensus 547 ~~ 548 (733)
T COG1203 547 ND 548 (733)
T ss_pred ec
Confidence 43
No 129
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.25 E-value=2.1e-10 Score=133.88 Aligned_cols=313 Identities=18% Similarity=0.152 Sum_probs=214.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPslk 1077 (1953)
.+.||.|+.+++-... +...+|...+|-||++..-...+ -..|-.|||||. +|+......+....-+..
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpal------~adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPAL------CADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhHH------hcCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 3799999999987776 77789999999999966533221 134678999996 577777777776654433
Q ss_pred EEEEecchhhHhHHHHHHH--hhccccEEEEeHHHHHhhhh-------cccccCccEEEcccccccCC------chhHHH
Q 000169 1078 CIYYVGAKDQRSRLFSQEV--AALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKD------RESVLA 1142 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei--~~~~fdVVITTYEsL~kd~s-------~L~kikWd~VIIDEAHrLKN------~~SKls 1142 (1953)
.+--..++.+.++. ...+ ....|.++..|++.+.+... .|....|.+|.|||.|.+.. +..+..
T Consensus 163 ~lnansske~~k~v-~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l 241 (695)
T KOG0353|consen 163 MLNANSSKEEAKRV-EAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKAL 241 (695)
T ss_pred hccCcccHHHHHHH-HHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHH
Confidence 33333333333322 1222 24678899999998876532 24445789999999997742 333334
Q ss_pred HHhh-hcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1143 RDLD-RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1143 raLk-~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
-.|+ .|+....|+||+|...+-+.|.-.+|..-. .-.|..-|+.|-.+..
T Consensus 242 ~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~fnr~nl~ye----------------------- 292 (695)
T KOG0353|consen 242 GILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAGFNRPNLKYE----------------------- 292 (695)
T ss_pred HHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecccCCCCceeE-----------------------
Confidence 4444 577788999999998888777766554221 1123333433321110
Q ss_pred HHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1222 klLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
++.-+-
T Consensus 293 -------------------------v~qkp~------------------------------------------------- 298 (695)
T KOG0353|consen 293 -------------------------VRQKPG------------------------------------------------- 298 (695)
T ss_pred -------------------------eeeCCC-------------------------------------------------
Confidence 000000
Q ss_pred HHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHH--HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCC
Q 000169 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (1953)
Q Consensus 1302 RKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kL--katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs 1379 (1953)
.--+++.+|..-+ .-.|..-||||-...-.+.+...|+..||....+|..+.
T Consensus 299 --------------------------n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~le 352 (695)
T KOG0353|consen 299 --------------------------NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLE 352 (695)
T ss_pred --------------------------ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccC
Confidence 0001111111111 124667799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHh--------------------------
Q 000169 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ-------------------------- 1433 (1953)
Q Consensus 1380 ~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~Q-------------------------- 1433 (1953)
+++|..+-..|-.+... +++.|-|.|.|||-+++..||+-..+-+...|.|
T Consensus 353 p~dks~~hq~w~a~eiq---vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqini 429 (695)
T KOG0353|consen 353 PEDKSGAHQGWIAGEIQ---VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINI 429 (695)
T ss_pred ccccccccccccccceE---EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeeh
Confidence 99999988888765444 6888999999999999999999999999999999
Q ss_pred -----------------hhhcccccCCcceEEEEEEeh
Q 000169 1434 -----------------AVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1434 -----------------AiGRAhRIGQKKeV~VyrLvT 1454 (1953)
--||++|-|++-+|..||-.+
T Consensus 430 levctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 430 LEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 468888999988887776544
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=1.7e-08 Score=128.95 Aligned_cols=414 Identities=16% Similarity=0.134 Sum_probs=227.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kwa 1073 (1953)
|...++-|+-|..-|+. |.|.-..||.|||+++...+. +... ....+.||+|+..|.. |...+.+|+
T Consensus 76 g~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~-l~AL--~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 76 GLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAA-GYAL--QGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHH-HHHH--cCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 33455569988876653 457778899999999865443 3322 2346888899886543 666666655
Q ss_pred CCCeEEEEecchh--hHhHHHHHHHhhccccEEEEeHHHH-----Hhh----hhcccccCccEEEcccccccCCchhHHH
Q 000169 1074 PSVSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFI-----MYD----RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1074 PslkVvvy~Gs~d--eRk~l~~qei~~~~fdVVITTYEsL-----~kd----~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
+++|.+..+... .|+. ....||+-+|-.-| +.. ........+.++||||++.+.=
T Consensus 147 -GLsvg~i~~~~~~~err~-------aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI------ 212 (764)
T PRK12326 147 -GLTVGWITEESTPEERRA-------AYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV------ 212 (764)
T ss_pred -CCEEEEECCCCCHHHHHH-------HHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee------
Confidence 466666655432 2222 22457777775443 221 1222334689999999997641
Q ss_pred HHhhhcccceeEEecccCC-CCCHHHHHHHHhhhcccc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhh
Q 000169 1143 RDLDRYRCQRRLLLTGTPL-QNDLKELWSLLNLLLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDW 1207 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPL-QNnL~ELwSLLnFLlP~i-F~----------S~---k~F~e~F~kPf~k~g~~~~~e~d~ 1207 (1953)
. .++.-|++||.+- .+.+..++.+..-|.++. |. +. ....+.|... . .|
T Consensus 213 ---D--eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~-------~----ly 276 (764)
T PRK12326 213 ---D--EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGI-------D----LY 276 (764)
T ss_pred ---c--cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCc-------c----cc
Confidence 1 2345678887553 233334444444443321 10 00 0011111100 0 00
Q ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHhhhhcCCCCceEEEEEecc-------CHHHHHHHHHHHHccCcccCchhHH--
Q 000169 1208 LETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRM-------SAIQSAIYDWIKATGTLRVDPEDEK-- 1277 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrP-FmLRRlKkDVekdLPpKvE~vV~c~M-------Sa~Qr~LYk~I~~~~~l~ld~~~ek-- 1277 (1953)
.. +.....++.+...|+. +++.|-+.-+.. +....+|. .. ..+..-+.+.+...-.+.+......
T Consensus 277 ~~-~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dgeV~iVD-e~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~A 351 (764)
T PRK12326 277 SE-EHVGTTLTQVNVALHAHALLQRDVHYIVR---DGKVHLIN-ASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLD 351 (764)
T ss_pred Cc-chhHHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeee
Confidence 00 0001112233333332 233332221211 11111111 11 2234445555544333322221100
Q ss_pred ----hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeE
Q 000169 1278 ----RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348 (1953)
Q Consensus 1278 ----~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVL 1348 (1953)
...+...................|+++.+-+.+.-|.... ...........|+..+..-+.++.+.|..||
T Consensus 352 sIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVL 431 (764)
T PRK12326 352 TITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVL 431 (764)
T ss_pred hhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 0000000000000111122234677776666554433221 1111222344678877777778889999999
Q ss_pred EeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc-------------
Q 000169 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------------- 1415 (1953)
Q Consensus 1349 IFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa------------- 1415 (1953)
|.|......+.|...|...|+++..|+.... ++-..+|.+-= ....+.|+|..+|+|.|+.-
T Consensus 432 Vgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG----~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~ 506 (764)
T PRK12326 432 VGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAG----KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAE 506 (764)
T ss_pred EEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcC----CCCcEEEEecCCCCccCeecCCCcccchHHHHH
Confidence 9999999999999999999999999998744 33355555432 22348999999999999763
Q ss_pred --CCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhh
Q 000169 1416 --ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1462 (1953)
Q Consensus 1416 --ADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~ 1462 (1953)
-=+||....+-|-..+.|..||++|.|.......| +++|+.++..
T Consensus 507 ~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~--lSleDdl~~~ 553 (764)
T PRK12326 507 LGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF--VSLEDDVVAA 553 (764)
T ss_pred cCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE--EEcchhHHHh
Confidence 24899999999999999999999999999887655 3556666543
No 131
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.16 E-value=7.4e-09 Score=137.73 Aligned_cols=111 Identities=20% Similarity=0.238 Sum_probs=78.2
Q ss_pred HHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccc
Q 000169 1333 LDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (1953)
Q Consensus 1333 LdrIL~kL-katGhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAG 1407 (1953)
+...|.++ ...+.++|||+....+++.+.+.|.. .++... ..+.. ..|.+++++|+.++.. +|++|..+
T Consensus 662 ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~---iLlgt~sf 735 (850)
T TIGR01407 662 IASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKA---ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCe---EEEEccee
Confidence 33334333 44667899999999999999999875 344433 33332 5789999999875444 78889999
Q ss_pred ccccCCccC--CeEEEcCCCC-Cch-----------------------------hHHhhhhcccccCCcceEEE
Q 000169 1408 GRGLNLQSA--DTVIIYDPDP-NPK-----------------------------NEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1408 GeGLNLQaA--DtVIifDppW-NP~-----------------------------~d~QAiGRAhRIGQKKeV~V 1449 (1953)
.+|||++.. ..|||.-.|+ +|. ...|++||+.|-...+-|.+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred ecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 999999974 5778877665 222 24488889988876665533
No 132
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.11 E-value=2.7e-09 Score=138.42 Aligned_cols=159 Identities=22% Similarity=0.161 Sum_probs=99.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--------CCCeEEEech-HHHHHHHHHHHHHCCCCeEEEEecchhhH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGN--------YGPHLIIVPN-AVLVNWKSELHKWLPSVSCIYYVGAKDQR 1088 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--------~GP~LIVVP~-SLL~QW~~Ef~KwaPslkVvvy~Gs~deR 1088 (1953)
...|-+||.++|.|||-.++.-|..-+..+.+ ...+.-|+|. +|+.-|...|.+|...+.+.|..-+.+..
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~ 403 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQ 403 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccccc
Confidence 34567899999999999887766554432221 1256788995 58888999999999877666655444432
Q ss_pred hHHHHHHHhhccccEEEEeHHHH---Hhhhhcccc-cCccEEEcccccccC-CchhHH----HHHhhhc----ccceeEE
Q 000169 1089 SRLFSQEVAALKFNVLVTTYEFI---MYDRSKLSK-VDWKYIIIDEAQRMK-DRESVL----ARDLDRY----RCQRRLL 1155 (1953)
Q Consensus 1089 k~l~~qei~~~~fdVVITTYEsL---~kd~s~L~k-ikWd~VIIDEAHrLK-N~~SKl----sraLk~L----~a~~RLL 1155 (1953)
.. ......-+|+|||++.. .+......- --++++||||.|-+- +.+..+ .+.+++. ...+.++
T Consensus 404 l~----~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVG 479 (1674)
T KOG0951|consen 404 LG----KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVG 479 (1674)
T ss_pred ch----hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeee
Confidence 11 11234568999999865 221111111 136789999999983 233333 2333332 2346799
Q ss_pred ecccCCCCCHHHHHHHHhhhcccccCC
Q 000169 1156 LTGTPLQNDLKELWSLLNLLLPEVFDN 1182 (1953)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S 1182 (1953)
||||- -|..|+-++|..-.+++|..
T Consensus 480 LSATL--PNy~DV~~Fl~v~~~glf~f 504 (1674)
T KOG0951|consen 480 LSATL--PNYEDVASFLRVDPEGLFYF 504 (1674)
T ss_pred ecccC--CchhhhHHHhccCccccccc
Confidence 99994 35677777665444666653
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=7.4e-08 Score=125.72 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=115.5
Q ss_pred HHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEe
Q 000169 1299 MELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylR 1373 (1953)
..|.++.+-+.+.-|.... ...........|+..+..-+..+...|..|||-|.+...-+.|...|...|+++-.
T Consensus 399 ~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~V 478 (913)
T PRK13103 399 FEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKV 478 (913)
T ss_pred HHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHH
Confidence 4567776666554443221 11222334457888888888888999999999999999999999999999999988
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCc-------------------------------------cC
Q 000169 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ-------------------------------------SA 1416 (1953)
Q Consensus 1374 LDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQ-------------------------------------aA 1416 (1953)
|+.... ++-..+|.+ ++.. -.+.|+|..+|+|.|+. .-
T Consensus 479 LNAk~~-~~EA~IIa~--AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GG 553 (913)
T PRK13103 479 LNAKYH-EKEAEIIAQ--AGRP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGG 553 (913)
T ss_pred hccccc-hhHHHHHHc--CCCC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCC
Confidence 887643 333445543 2322 24789999999999975 23
Q ss_pred CeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1417 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1417 DtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
=+||.-..+-|-..+.|..||++|.|.......|. ++++.+.+
T Consensus 554 LhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l--SlED~Lmr 596 (913)
T PRK13103 554 LHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL--SLEDSLMR 596 (913)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCceEEEE--EcCcHHHH
Confidence 48999999999999999999999999998876653 34555554
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.7e-08 Score=123.66 Aligned_cols=109 Identities=26% Similarity=0.332 Sum_probs=96.7
Q ss_pred HHHHHHHHH---HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1332 ILDRILIKL---QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1332 lLdrIL~kL---katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
-++.++.++ .+.+.||||-+-...|++-|.+||...|+++..+|.....-+|.++|.+.+.+.-+ +|+....+-
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLR 507 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLR 507 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhh
Confidence 344555444 56789999999999999999999999999999999999999999999999986555 799999999
Q ss_pred cccCCccCCeEEEcCCCC-----CchhHHhhhhcccccCC
Q 000169 1409 RGLNLQSADTVIIYDPDP-----NPKNEEQAVARAHRIGQ 1443 (1953)
Q Consensus 1409 eGLNLQaADtVIifDppW-----NP~~d~QAiGRAhRIGQ 1443 (1953)
+||||+.+..|.|+|.|- +-...+|-||||.|--.
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~ 547 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC
Confidence 999999999999999884 78889999999999543
No 135
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.3e-08 Score=131.21 Aligned_cols=128 Identities=26% Similarity=0.409 Sum_probs=92.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
|..++..|.- |+..+..+.--.|+ .+||+|||--.+...+++.. ++ ++++||+|+. |+.|-.+.+.++..
T Consensus 80 G~~~ws~QR~---WakR~~rg~SFaii-APTGvGKTTfg~~~sl~~a~-kg--kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRV---WAKRLVRGKSFAII-APTGVGKTTFGLLMSLYLAK-KG--KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHH---HHHHHHcCCceEEE-cCCCCchhHHHHHHHHHHHh-cC--CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4578888976 44444444333455 58999999665554444442 22 6899999987 66777788888873
Q ss_pred ---CCeEEEEecch--hhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEccccccc
Q 000169 1075 ---SVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1134 (1953)
Q Consensus 1075 ---slkVvvy~Gs~--deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrL 1134 (1953)
...++ ||+.- .++.. ....+..++|+|+|||-.++.++...|.+.+|++|+||.++-+
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee-~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEE-ALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred CCcceeee-eccccchHHHHH-HHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 33344 88863 33333 3445778999999999999999999999999999999999876
No 136
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.00 E-value=5.9e-09 Score=117.91 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC--CeEEEechH-HHHHHHHHHH---HHCCC
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG--PHLIIVPNA-VLVNWKSELH---KWLPS 1075 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G--P~LIVVP~S-LL~QW~~Ef~---KwaPs 1075 (1953)
.+-|.+++...+- +-..+.-.-.|.|||.... ++.|-...+..| .+||+|-+. |..|..+|+. ++.|+
T Consensus 66 sevqhecipqail----gmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 66 SEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred hHhhhhhhhHHhh----cchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 3567787766664 4445556778999996653 333333334334 568888766 6677777755 55799
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccC
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMK 1135 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLK 1135 (1953)
+++.++.|+-...+.. +.....++|||.|++.+... ...|.-.+..+.|+|||..|.
T Consensus 140 vkvaVFfGG~~Ikkde---e~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDE---ELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred ceEEEEEcceeccccH---HHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 9999998876544321 23344789999999988643 234555577899999999874
No 137
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.99 E-value=1.6e-08 Score=135.46 Aligned_cols=159 Identities=20% Similarity=0.173 Sum_probs=104.1
Q ss_pred CCcHHHHHHHHHHHH-----hh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLS-----LY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE 1068 (1953)
Q Consensus 1000 kLRPYQleGL~WLls-----L~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~E 1068 (1953)
..|+||.-...+.+. .. ..+.+|++.+-+|+|||++++-+...+.+. .....++|||-.. |-.|-..+
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~ 322 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDE 322 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHH
Confidence 566665555444443 11 234579999999999999997776666654 5556777888654 77888999
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh----cccccCccEEEcccccccCCchhHHHHH
Q 000169 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1069 f~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s----~L~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
|..+........-..+.+..++ .+....-.|+|||.+.|..... .....+.-+||+|||||-- ...+.+.
T Consensus 323 f~~~~~~~~~~~~~~s~~~Lk~----~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~ 396 (962)
T COG0610 323 FQSFGKVAFNDPKAESTSELKE----LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKL 396 (962)
T ss_pred HHHHHHhhhhcccccCHHHHHH----HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHH
Confidence 9998765444331222222222 2333456899999998865532 2345577899999999953 3344444
Q ss_pred hh-hcccceeEEecccCCCCCH
Q 000169 1145 LD-RYRCQRRLLLTGTPLQNDL 1165 (1953)
Q Consensus 1145 Lk-~L~a~~RLLLTGTPLQNnL 1165 (1953)
++ .|....-+++||||+...-
T Consensus 397 ~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 397 LKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhccceEEEeeCCcccccc
Confidence 44 4555778999999986543
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=5.3e-07 Score=117.10 Aligned_cols=407 Identities=15% Similarity=0.226 Sum_probs=221.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kwa 1073 (1953)
|...++-|+-|.--|. .|.|.=..||=|||+++.. .+||....| ..+-||+.+..|. .|...+.+|+
T Consensus 76 G~r~ydVQliGglvLh------~G~IAEMkTGEGKTLvAtL-payLnAL~G--kgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 76 GKRPYDVQIIGGIILD------LGSVAEMKTGEGKTITSIA-PVYLNALTG--KGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CCCcCchHHHHHHHHh------cCCeeeecCCCCccHHHHH-HHHHHHhcC--CceEEEecchhhhhhhHHHHHHHHHHh
Confidence 3344555888764432 3557779999999998643 344433222 2445555555443 4999999988
Q ss_pred CCCeEEEE-ec-chhhHhHHHHHHHhhccccEEEEeHHHH-----Hhh----hhcccccCccEEEcccccccCCchhHHH
Q 000169 1074 PSVSCIYY-VG-AKDQRSRLFSQEVAALKFNVLVTTYEFI-----MYD----RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1074 PslkVvvy-~G-s~deRk~l~~qei~~~~fdVVITTYEsL-----~kd----~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
+ +.|-+. .+ ....|+.. ...||+-+|..-| +.. ...+....+.|+||||++.+.=.
T Consensus 147 G-LsvG~i~~~~~~~~rr~a-------Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILID----- 213 (925)
T PRK12903 147 G-LSVGINKANMDPNLKREA-------YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILID----- 213 (925)
T ss_pred C-CceeeeCCCCChHHHHHh-------ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeec-----
Confidence 4 333333 33 33333322 2457777775543 322 12223357889999999987411
Q ss_pred HHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCC-----------------hHHHHhhhcCCcccCCCCCCCCh
Q 000169 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN-----------------RKAFHDWFSQPFQKEGPTHNADD 1205 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S-----------------~k~F~e~F~kPf~k~g~~~~~e~ 1205 (1953)
.++.-|++||.+ ... .++|..++-+.+.+-.. .....+.|..+ +
T Consensus 214 ------EArTPLIISg~~-~~~-~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~--n--------- 274 (925)
T PRK12903 214 ------EAKTPLIISGGQ-SND-SNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLK--N--------- 274 (925)
T ss_pred ------ccCCcccccCCC-ccc-hHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCC--c---------
Confidence 123345666643 222 24555444332211100 00111111100 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH
Q 000169 1206 DWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK 1277 (1953)
Q Consensus 1206 d~l~eEek~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ek 1277 (1953)
+........++.+...|+.. ++.|-+.-|-. +....+|. ..| .+..-+.+.+...-.+.+.....
T Consensus 275 --Ly~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~---dg~V~IVD-efTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~- 347 (925)
T PRK12903 275 --LYDIENSELVHRIQNALRAHKVMKEDVEYIVR---DGKIELVD-QFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETK- 347 (925)
T ss_pred --ccChhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHHHcCCCCCCCce-
Confidence 00011112234444444443 33332222211 11122221 111 23334444444332222221110
Q ss_pred hhhhcC--hhhHHHHHHHH-------HHHHHHHHHhcCCCCCCCCCcccc-----chhhhhhcccHHHHHHHHHHHHHhc
Q 000169 1278 RRVQKN--PIYQAKVYKTL-------NNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRT 1343 (1953)
Q Consensus 1278 ~~l~kn--~~~~ak~~~sL-------~nilmqLRKiCNHP~L~~p~l~dl-----s~d~Li~~SGKLelLdrIL~kLkat 1343 (1953)
.+..- ..| -+.|..| ...-..|.++.+.+.+..|..... ..........|+..+..-+.++...
T Consensus 348 -TlAsIT~Qnf-Fr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~ 425 (925)
T PRK12903 348 -TLATITYQNF-FRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKK 425 (925)
T ss_pred -eeeeehHHHH-HHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhc
Confidence 00000 000 0011111 112235667766665554433211 1112233457888888888888889
Q ss_pred CCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCC------
Q 000169 1344 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD------ 1417 (1953)
Q Consensus 1344 GhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaAD------ 1417 (1953)
|..|||.|......+.|..+|...|+++..|+.... +.-..+|. +++ ..-.+.|+|..+|+|.|+.-..
T Consensus 426 gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG--~~GaVTIATNMAGRGTDI~Lg~~V~~~G 500 (925)
T PRK12903 426 GQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAG--QKGAITIATNMAGRGTDIKLSKEVLELG 500 (925)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCC--CCCeEEEecccccCCcCccCchhHHHcC
Confidence 999999999999999999999999999999988643 22333443 333 2335899999999999987544
Q ss_pred --eEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1418 --TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1418 --tVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
+||....+-|-..+.|..||++|.|.....+.|. ++++.+.+
T Consensus 501 GLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l--SLeD~L~r 544 (925)
T PRK12903 501 GLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI--SLDDQLFR 544 (925)
T ss_pred CcEEEecccCchHHHHHHHhcccccCCCCCcceEEE--ecchHHHH
Confidence 9999999999999999999999999998876553 44555543
No 139
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.90 E-value=1.7e-08 Score=126.24 Aligned_cols=246 Identities=16% Similarity=0.247 Sum_probs=139.5
Q ss_pred CCcccCCCCCcHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 992 QPSMLRAGTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 992 qPs~L~ggkLRPYQleGL~WLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.|. +..|-|-..|+++|-|.+..... +.|-+|.|.-|.||-.++..+|..-+ .+++.+...|-|-..|-..-
T Consensus 257 lP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNy-LkGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 257 LPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENY-LKGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred ccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhh-hcccceeEEEEeccccccch
Confidence 566 33468999999999999976542 33558999999999777666664433 24555455555566676666
Q ss_pred HHHHHHHC-CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--------hcccc-cCc------cEEEcc
Q 000169 1066 KSELHKWL-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSK-VDW------KYIIID 1129 (1953)
Q Consensus 1066 ~~Ef~Kwa-PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--------s~L~k-ikW------d~VIID 1129 (1953)
.+.+.... +.+.|..+..-+ -.++...+....+-.|+++||..|+-+. ..|.. +.| .+||+|
T Consensus 335 ERDL~DigA~~I~V~alnK~K--YakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKFK--YAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred hhchhhcCCCCccceehhhcc--cccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 66666553 344433321110 0111111122344579999999997541 11111 123 589999
Q ss_pred cccccCC-------chhHHHHHhh----hcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhh--hcCCccc
Q 000169 1130 EAQRMKD-------RESVLARDLD----RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDW--FSQPFQK 1196 (1953)
Q Consensus 1130 EAHrLKN-------~~SKlsraLk----~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~--F~kPf~k 1196 (1953)
|||+.|| ..++..+++. .++..+.+..|||-.. |-.++..+..-++|+....|-++ |...+++
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eFi~AvEk 488 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEFIHAVEK 488 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHHHHHHHh
Confidence 9999998 3345555444 3466788889998532 33455556666776655443321 2233444
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHH
Q 000169 1197 EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263 (1953)
Q Consensus 1197 ~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I 1263 (1953)
.|....... .+...++...+-|-- .+-.-...+..++|+..-+.+|+..
T Consensus 489 RGvGAMEIV-------------AMDMK~rGmYiARQL-----SFkgVsFrieEv~ls~eF~k~Yn~a 537 (1300)
T KOG1513|consen 489 RGVGAMEIV-------------AMDMKLRGMYIARQL-----SFKGVSFRIEEVPLSKEFRKVYNRA 537 (1300)
T ss_pred cCCceeeee-------------ehhhhhhhhhhhhhc-----cccCceEEEEecccCHHHHHHHHHH
Confidence 444332211 111122322222211 1223345677889999999999743
No 140
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.86 E-value=3.3e-08 Score=117.22 Aligned_cols=206 Identities=19% Similarity=0.251 Sum_probs=117.1
Q ss_pred EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhh----HHHHHHHHHHHHHHHHHhcCCCCCCCCCcc----
Q 000169 1245 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY----QAKVYKTLNNRCMELRKTCNHPLLNYPYFS---- 1316 (1953)
Q Consensus 1245 E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~----~ak~~~sL~nilmqLRKiCNHP~L~~p~l~---- 1316 (1953)
++.+.++|+..|+.+|+.+.......+...- ......... .......+.-.+.+|+.+|+||+|..+.+.
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~l 82 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFC--ETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQL 82 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHH--HSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHH--cccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcccc
Confidence 5778899999999999987653221111000 000000000 001235666778899999999999655442
Q ss_pred --ccchhhhhhcccHHHHHHHHHHHH-----HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH--
Q 000169 1317 --DLSKDFLVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI-- 1387 (1953)
Q Consensus 1317 --dls~d~Li~~SGKLelLdrIL~kL-----katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI-- 1387 (1953)
......+...||||.+|.+++..+ ...+.++||.++...++|+||.+|...++.|.|++|..-.++....-
T Consensus 83 l~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~ 162 (297)
T PF11496_consen 83 LLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKN 162 (297)
T ss_dssp -STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---
T ss_pred ccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcc
Confidence 112456788999999999999999 66778999999999999999999999999999999976555443322
Q ss_pred ----------HHh-hcCCCCccEEEEeccccccc----cCCccCCeEEEcCCCCCchhHHhhhhcc-cccCCcceEEEEE
Q 000169 1388 ----------VDF-NSHDSDCFIFLLSIRAAGRG----LNLQSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVKVIY 1451 (1953)
Q Consensus 1388 ----------erF-Ns~ds~ifVfLLSTrAGGeG----LNLQaADtVIifDppWNP~~d~QAiGRA-hRIGQKKeV~Vyr 1451 (1953)
... ..+...+.|+|++++-.... ++-...|.||-||+.+++....-..=|. +|-+ +.|-|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~Piir 240 (297)
T PF11496_consen 163 GNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIR 240 (297)
T ss_dssp -------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEE
T ss_pred cccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEE
Confidence 011 11234567778877755442 3334579999999999988755444444 3433 7888999
Q ss_pred Eeh
Q 000169 1452 MEA 1454 (1953)
Q Consensus 1452 LvT 1454 (1953)
++.
T Consensus 241 Lv~ 243 (297)
T PF11496_consen 241 LVP 243 (297)
T ss_dssp EEE
T ss_pred Eee
Confidence 876
No 141
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.82 E-value=1.1e-08 Score=121.82 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=89.7
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcC---CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rG---ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
.-.|.||||....-+|-|+.++..+| |.++.++|+-++.+|..-|+.|...+-. |||+|+++.+|||++..-.|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceE
Confidence 45789999999999999999999885 5688899999999999999999986666 99999999999999999999
Q ss_pred EEcCCCCCchhHHhhhhcccccC
Q 000169 1420 IIYDPDPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1420 IifDppWNP~~d~QAiGRAhRIG 1442 (1953)
|+..+|-....|++||||++|.-
T Consensus 581 invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEEecCcccchhhhhhhccchhh
Confidence 99999999999999999998864
No 142
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.80 E-value=1.1e-06 Score=112.99 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=96.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH-HHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW-KSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW-~~Ef~KwaPsl 1076 (1953)
..+|-.+|++++..|.. +-..++|.-|-.|||++|=..|+- ...+ ..+++.-.|-..+.|. .++|+.-|.++
T Consensus 295 pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAial-aq~h--~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIAL-AQKH--MTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHH-HHhh--ccceEecchhhhhccchHHHHHHhcccc
Confidence 45899999999977765 778899999999999998544432 2222 2367778897777664 57788777766
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEcccccccCCch-hHHHHH-hhhccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDRE-SVLARD-LDRYRC 1150 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAHrLKN~~-SKlsra-Lk~L~a 1150 (1953)
. +..|.... ......+|+|-+.++.- .+.+. +...||+||.|++.+.. .-.|.. +..++.
T Consensus 368 g--LlTGDvqi----------nPeAsCLIMTTEILRsMLYrgadliR--DvE~VIFDEVHYiND~eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 368 G--LLTGDVQI----------NPEASCLIMTTEILRSMLYRGADLIR--DVEFVIFDEVHYINDVERGVVWEEVIIMLPR 433 (1248)
T ss_pred c--eeecceee----------CCCcceEeehHHHHHHHHhcccchhh--ccceEEEeeeeecccccccccceeeeeeccc
Confidence 5 44554322 23457899999988754 22233 46679999999996632 233433 334433
Q ss_pred c-eeEEecccC
Q 000169 1151 Q-RRLLLTGTP 1160 (1953)
Q Consensus 1151 ~-~RLLLTGTP 1160 (1953)
. ..++||||-
T Consensus 434 HV~~IlLSATV 444 (1248)
T KOG0947|consen 434 HVNFILLSATV 444 (1248)
T ss_pred cceEEEEeccC
Confidence 3 478999993
No 143
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.74 E-value=1e-07 Score=112.27 Aligned_cols=233 Identities=17% Similarity=0.225 Sum_probs=138.6
Q ss_pred cCCCCCcHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000169 996 LRAGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 996 L~ggkLRPYQleGL~WLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
+..|.|-.-|+++|-+...... .+.|-+|.|.+|.||..++.++|.+.+- +++.+++.|-+...|...-.+.+
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l-~Gr~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL-RGRKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-cCCCceEEEECChhhhhHHHHHH
Confidence 3457899999999999997765 3556699999999999999999988764 45544555555667877766666
Q ss_pred HHHCCC-CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh-------hccccc-Cc------cEEEccccccc
Q 000169 1070 HKWLPS-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-------SKLSKV-DW------KYIIIDEAQRM 1134 (1953)
Q Consensus 1070 ~KwaPs-lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~-------s~L~ki-kW------d~VIIDEAHrL 1134 (1953)
...... +.+..+..-+.. .....+..|+++||..|+... ..|..+ .| .+||+||||++
T Consensus 112 ~DIG~~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 112 RDIGADNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHhCCCcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 654322 222222111100 112235689999999998762 222211 22 48999999999
Q ss_pred CCchh------HHHHHhhh----cccceeEEecccCCCCCHHHHHHHHhhhcccc------cCChHHHHhhhcCCcccCC
Q 000169 1135 KDRES------VLARDLDR----YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV------FDNRKAFHDWFSQPFQKEG 1198 (1953)
Q Consensus 1135 KN~~S------KlsraLk~----L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~i------F~S~k~F~e~F~kPf~k~g 1198 (1953)
||..+ +...++.. ++..+.+..|||...+- -+|..+..-++ |.+...|.+-+. +.|
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep----~NmaYm~RLGLWG~gtpf~~~~~f~~a~~----~gG 256 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP----RNMAYMSRLGLWGPGTPFPDFDDFLEAME----KGG 256 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC----ceeeeeeeccccCCCCCCCCHHHHHHHHH----hcC
Confidence 99654 44455443 45567899999986432 22222222233 344455544332 221
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHH
Q 000169 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 1262 (1953)
Q Consensus 1199 ~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~ 1262 (1953)
... ..++. ..-..+..+++|... +-.-...++.++|++.+..+|+.
T Consensus 257 v~a------------mE~vA-~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 257 VGA------------MEMVA-MDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred chH------------HHHHH-HHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 110 00000 011122334444332 33445678899999999999973
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.73 E-value=2.1e-06 Score=115.70 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=77.6
Q ss_pred HHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHcCC--eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1332 ILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1332 lLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~rGi--kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
.+.+.|..+ ...+.++|||+....++..+.++|..... .+..+.-+++...|.+++++|+..+.. +|+.+....
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sFw 815 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCccc
Confidence 444444444 34667888888888889888888875422 132333233334578999999874433 788899999
Q ss_pred cccCCcc--CCeEEEcCCCC-Cchh-----------------------------HHhhhhcccccCCcceE
Q 000169 1409 RGLNLQS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1409 eGLNLQa--ADtVIifDppW-NP~~-----------------------------d~QAiGRAhRIGQKKeV 1447 (1953)
+|+|++. +..|||.-.|+ +|.. ..|++||.-|-.+.+-|
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 9999997 58999988887 4542 24778888887766554
No 145
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.71 E-value=1.4e-06 Score=114.18 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=59.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
..+||.|.+-...+......+.++||-.+||+|||+.+|+..+......+...++++.+.++ -+.|-.+|+.+
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 35799999999999999999999999999999999998887665554344445677777765 68888899888
No 146
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.70 E-value=2.3e-06 Score=110.21 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-----CCCeE
Q 000169 1005 QIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-----PSVSC 1078 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-----PslkV 1078 (1953)
|.+-+.++...+.++...|+-..||+|||+..+..+..... .....++||++|+. |..|+.+++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK-ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH-hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 77888888888888877888899999999998877654443 22346899999976 7788888776554 24555
Q ss_pred EEEecc
Q 000169 1079 IYYVGA 1084 (1953)
Q Consensus 1079 vvy~Gs 1084 (1953)
++..|.
T Consensus 81 ~~lkGr 86 (636)
T TIGR03117 81 GFFPGS 86 (636)
T ss_pred EEEECC
Confidence 555543
No 147
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.70 E-value=1.5e-06 Score=112.91 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=105.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.|-+-|..++.-+..........+|.--||+|||-..+.+|...+. . .+.+||+||.. ++.|-...|...|+ .++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-~--GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-Q--GKQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-c--CCEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 5778899999988876522344589999999999999999988775 2 25799999964 88898888988887 667
Q ss_pred EEEecc--hhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEccccccc--CCchhHHH--HHhh----hc
Q 000169 1079 IYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVLA--RDLD----RY 1148 (1953)
Q Consensus 1079 vvy~Gs--~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrL--KN~~SKls--raLk----~L 1148 (1953)
.+++.. +.+|...+. .+..+...|||.|...+.- .--+..+|||||=|.- |-.+..++ +.+. ..
T Consensus 274 ~vlHS~Ls~~er~~~W~-~~~~G~~~vVIGtRSAlF~-----Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 274 AVLHSGLSPGERYRVWR-RARRGEARVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhcccCChHHHHHHHH-HHhcCCceEEEEechhhcC-----chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 777654 334433332 3556888999999987742 2235689999999974 33222111 1111 22
Q ss_pred ccceeEEecccC
Q 000169 1149 RCQRRLLLTGTP 1160 (1953)
Q Consensus 1149 ~a~~RLLLTGTP 1160 (1953)
..--.++=||||
T Consensus 348 ~~~pvvLgSATP 359 (730)
T COG1198 348 ENAPVVLGSATP 359 (730)
T ss_pred hCCCEEEecCCC
Confidence 233478889999
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.68 E-value=2.3e-05 Score=102.79 Aligned_cols=365 Identities=16% Similarity=0.208 Sum_probs=184.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kwa 1073 (1953)
|...++-|+-|.--| ..|.|.=..||-|||+++. +.+++... ....+-||+++.-|. .|...+-+|+
T Consensus 74 G~r~ydvQlig~l~L------~~G~IaEm~TGEGKTL~a~-l~ayl~aL--~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 74 GLRHFDVQLIGGLVL------NDGKIAEMKTGEGKTLVAT-LPAYLNAL--TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CCCCCchHhhhhHhh------cCCccccccCCCCchHHHH-HHHHHHHh--cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 435566688886433 2356777999999999764 34444432 234678888887554 4999999988
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhccccEEEEeHH-----HHHhhh----hcccccCccEEEcccccccCCchhHHH
Q 000169 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYE-----FIMYDR----SKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1074 PslkVvvy~Gs--~deRk~l~~qei~~~~fdVVITTYE-----sL~kd~----s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
+ +.|-+..+. ...|+. .-..+|+-+|-. +|+... .......+.++||||++.+.=
T Consensus 145 G-Lsvg~i~~~~~~~err~-------aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI------ 210 (870)
T CHL00122 145 G-LTVGLIQEGMSSEERKK-------NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI------ 210 (870)
T ss_pred C-CceeeeCCCCChHHHHH-------hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee------
Confidence 5 555444332 223322 234577777654 333221 112234688999999998741
Q ss_pred HHhhhcccceeEEecccCCCCCHHHHHHHHhh----hcccc-cC----------Ch--HHHHhhhcCCcccCCCCCCCCh
Q 000169 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-FD----------NR--KAFHDWFSQPFQKEGPTHNADD 1205 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-F~----------S~--k~F~e~F~kPf~k~g~~~~~e~ 1205 (1953)
.. ++.-|++||-+-. ..++|...+- |..+. |. +. ..+.+.|.. +... . .
T Consensus 211 ---De--ArTPLiISg~~~~--~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~-i~~l--y-~--- 276 (870)
T CHL00122 211 ---DE--ARTPLIISGQSKT--NIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILK-IEDL--Y-S--- 276 (870)
T ss_pred ---cc--CCCceeccCCCcc--chHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcC-Cccc--c-c---
Confidence 11 2334677775432 2345544332 22221 00 00 001111100 0000 0 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH
Q 000169 1206 DWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK 1277 (1953)
Q Consensus 1206 d~l~eEek~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c~MS-------a~Qr~LYk~I~~~~~l~ld~~~ek 1277 (1953)
... ..++.+...|+.. ++.|-+.-+.. +....+|. ..| .+..-+.+.+...-.+.+......
T Consensus 277 -----~~~-~~~~~i~~AL~A~~lf~~d~dYiV~---dgeV~iVD-e~TGR~m~grrws~GLHQaiEaKEgv~It~e~~t 346 (870)
T CHL00122 277 -----AND-PWIPYILNALKAKELFFKNVHYIVR---NNEIIIVD-EFTGRIMPGRRWSDGLHQAIEAKENLPIRQETET 346 (870)
T ss_pred -----ccc-HHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCcCCCCCccchHHHHHHHhhcCCCCCCCcee
Confidence 000 1122333333332 22222221111 11111111 112 234445555544332222211100
Q ss_pred h------hhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccc----hhhh-hhcccHHHHHHHHHHHHHhcCCe
Q 000169 1278 R------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHR 1346 (1953)
Q Consensus 1278 ~------~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls----~d~L-i~~SGKLelLdrIL~kLkatGhK 1346 (1953)
. ..++...............-..|+++-+-+.+..|...... .+.+ .....|...+..-+..+...|..
T Consensus 347 lAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grP 426 (870)
T CHL00122 347 LASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRP 426 (870)
T ss_pred eeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCC
Confidence 0 00000000000001111223456777666655444332111 1122 23345777766666777889999
Q ss_pred eEEeechhHHHHHHHHHHHHcCCeEEeecCCC-CHHHHHHHHHHhhcCCCCccEEEEeccccccccCC
Q 000169 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT-SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1413 (1953)
Q Consensus 1347 VLIFSQft~~LDILed~L~~rGikylRLDGsT-s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNL 1413 (1953)
|||-|.....-+.|...|...|+++..|+... ..+.-..+|.+= +. .-.+-|+|..+|+|.|+
T Consensus 427 VLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~--~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 427 ILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GR--KGSITIATNMAGRGTDI 490 (870)
T ss_pred EEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CC--CCcEEEeccccCCCcCe
Confidence 99999999999999999999999999999874 334445566553 22 23488999999999774
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.68 E-value=3.9e-06 Score=109.05 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=79.9
Q ss_pred HhcCCeeEEeechhHHHHHHHHHHHHcCCe-EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc--CC
Q 000169 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--AD 1417 (1953)
Q Consensus 1341 katGhKVLIFSQft~~LDILed~L~~rGik-ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa--AD 1417 (1953)
...+.++|||+..-.+|..+.++|...... .+...|... +..+++.|...... .|++.+....+|+|++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 455669999999999999999999877763 455566654 44899999875443 68999999999999997 68
Q ss_pred eEEEcCCCCC-chh-----------------------------HHhhhhcccccCCcceEEEE
Q 000169 1418 TVIIYDPDPN-PKN-----------------------------EEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1418 tVIifDppWN-P~~-----------------------------d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
.|||.-.||= |.. ..|++||+.|--..+-|.|+
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 9999888874 332 34999999995555555444
No 150
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.65 E-value=5.2e-06 Score=110.46 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccccccc
Q 000169 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1411 (1953)
Q Consensus 1332 lLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGL 1411 (1953)
.+...+..+...+.++|||+....+++.+.+.|....+.. ..-|... .|.+++++|+..+.. +|+.|....+|+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4444455555677899999988999998888887665544 4445332 356799999874444 789999999999
Q ss_pred CCc--cCCeEEEcCCCC
Q 000169 1412 NLQ--SADTVIIYDPDP 1426 (1953)
Q Consensus 1412 NLQ--aADtVIifDppW 1426 (1953)
|++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 997 366678877663
No 151
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.58 E-value=2.4e-06 Score=113.42 Aligned_cols=159 Identities=20% Similarity=0.197 Sum_probs=107.9
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 997 ~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.+++|-++|.+++.-+.. +.+.++|..||.|||+.+-..|.+-+. .+ .++.-..|.- |..|=.++|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~-~~--qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALR-DG--QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHH-cC--CceEeccchhhhhhhHHHHHHHHhhh
Confidence 467999999999976665 888999999999999999877766553 22 2478888966 455556677666653
Q ss_pred C--eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCch--hHHHHHhhhcc
Q 000169 1076 V--SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR 1149 (1953)
Q Consensus 1076 l--kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~ 1149 (1953)
+ .+-++.|.... ..+..++|.|-+.|+.- +....-.....||+||.|.|.... ..+=..+..+.
T Consensus 189 v~~~vGL~TGDv~I----------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 189 VADMVGLMTGDVSI----------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhccceecceee----------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 3 33444453221 24557777777888653 121222356789999999997533 33334445555
Q ss_pred cc-eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000169 1150 CQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (1953)
Q Consensus 1150 a~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~k 1192 (1953)
.. +.++||||- ++...|.+|+..
T Consensus 259 ~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 259 DHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred CCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 55 689999993 455788888864
No 152
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.56 E-value=9.4e-05 Score=98.10 Aligned_cols=130 Identities=15% Similarity=0.222 Sum_probs=103.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..+..-+..+...|..|||-|.++..-++|...|..+|+++-.|+.... +.-..+|.+== . .-.+-|+|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~AG--~--~GaVTIAT 683 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEAG--Q--PGTVTIAT 683 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhcC--C--CCcEEEec
Confidence 3457888888888888999999999999999999999999999999988877643 22334444332 2 22478999
Q ss_pred cccccccCCc--------cCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhh
Q 000169 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (1953)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (1953)
..+|+|.|+. .-=+||.-..+-|...+.|..||++|.|.......| +++|+.+++
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~--lSLEDdLmr 746 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY--VSLEDNLMR 746 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE--EEcccHHHH
Confidence 9999999976 346899999999999999999999999999887654 345555543
No 153
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.55 E-value=8.6e-05 Score=97.61 Aligned_cols=373 Identities=16% Similarity=0.201 Sum_probs=187.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kwa 1073 (1953)
|...++-|+.|.--| +.|.|.-..||-|||+++ .+.+|+....+ ..+-||+++.-|. .|...+.+|+
T Consensus 83 G~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~a-tlpaylnAL~G--kgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVA-TLPSYLNALTG--KGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCCcchhHHHhhhhh------cCCceeeecCCCChhHHH-HHHHHHHhhcC--CCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 334455588876544 346688899999999976 44555543222 3577777877554 4999999998
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhccccEEEEeHHHH-----Hhhh----hcccccCccEEEcccccccCCchhHHH
Q 000169 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFI-----MYDR----SKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1074 PslkVvvy~Gs--~deRk~l~~qei~~~~fdVVITTYEsL-----~kd~----s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
++.|-+..+. ...|+ .....||+.+|-..| +.+. .......+.++||||++.+.
T Consensus 154 -GLtvg~i~~~~~~~err-------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL------- 218 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERK-------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL------- 218 (939)
T ss_pred -CCeEEEECCCCChHHHH-------HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee-------
Confidence 5555554432 22222 234568888886554 3322 11233578999999999874
Q ss_pred HHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhh----cCCcccCCCCCC---CChhhHHHHHH--
Q 000169 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF----SQPFQKEGPTHN---ADDDWLETEKK-- 1213 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F----~kPf~k~g~~~~---~e~d~l~eEek-- 1213 (1953)
+.. ++.-|++||.+- ...++|...+-+... +.+|. ...+........ .+......+..
T Consensus 219 --IDE--ArTPLIISg~~~--~~~~~y~~~~~~~~~-------L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~ 285 (939)
T PRK12902 219 --IDE--ARTPLIISGQVE--RPQEKYQKAAEVAAA-------LQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLG 285 (939)
T ss_pred --ecc--CCCcccccCCCc--cchHHHHHHHHHHHH-------hhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhC
Confidence 111 223377788653 223444333222110 00000 000000000000 00000000000
Q ss_pred --------HHHHHHHHHHhhHH-HHHHHHhhhhcCCCCceEEEEEe------ccCHHHHHHHHHHHHccCcccCchhHH-
Q 000169 1214 --------VIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRC------RMSAIQSAIYDWIKATGTLRVDPEDEK- 1277 (1953)
Q Consensus 1214 --------~liI~RLhklLrPF-mLRRlKkDVekdLPpKvE~vV~c------~MSa~Qr~LYk~I~~~~~l~ld~~~ek- 1277 (1953)
....+.+...|+.. ++.|-+.-+-. +....+|.- +-..+..-+.+.+...-.+.+......
T Consensus 286 i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~---dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tl 362 (939)
T PRK12902 286 VSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVR---NGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTL 362 (939)
T ss_pred chhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEE---CCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceee
Confidence 01122233333322 22222221111 111111110 111244445555544333322211100
Q ss_pred -----hhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc-----cchhhhhhcccHHHHHHHHHHHHHhcCCee
Q 000169 1278 -----RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRV 1347 (1953)
Q Consensus 1278 -----~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~d-----ls~d~Li~~SGKLelLdrIL~kLkatGhKV 1347 (1953)
...+................-..|+++.+-+.+..|.... ...........|+..+..-+.++.+.|..|
T Consensus 363 AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPV 442 (939)
T PRK12902 363 ASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPV 442 (939)
T ss_pred eeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCE
Confidence 0000000000000011111224577776666554443221 111122233578888887778888999999
Q ss_pred EEeechhHHHHHHHHHHHHcCCeEEeecCC-CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCc
Q 000169 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1414 (1953)
Q Consensus 1348 LIFSQft~~LDILed~L~~rGikylRLDGs-Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQ 1414 (1953)
||-|.....-+.|...|...|+++-.|+.. ...+.-..+|.+- +. .-.+-|+|..+|+|.|+.
T Consensus 443 LIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~--~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 443 LVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GR--KGAVTIATNMAGRGTDII 506 (939)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CC--CCcEEEeccCCCCCcCEe
Confidence 999999999999999999999999999986 3434455566653 22 224789999999997643
No 154
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.47 E-value=2.3e-05 Score=101.53 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=102.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH-H-CCCCe
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK-W-LPSVS 1077 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K-w-aPslk 1077 (1953)
.-.+|.+-+.- ...+...+|..++-.|||....-.|...++ ....+-++.|+|+. ++.|-..++.. | ++.+.
T Consensus 512 Pd~WQ~elLDs----vDr~eSavIVAPTSaGKTfisfY~iEKVLR-esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 512 PDEWQRELLDS----VDRNESAVIVAPTSAGKTFISFYAIEKVLR-ESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CcHHHHHHhhh----hhcccceEEEeeccCCceeccHHHHHHHHh-hcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 34578776543 344667888899999999988777776665 45667889999976 66666555543 3 23332
Q ss_pred EEEE-ecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccc--cCccEEEcccccccCCch-hHHHHHhhhccc
Q 000169 1078 CIYY-VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSK--VDWKYIIIDEAQRMKDRE-SVLARDLDRYRC 1150 (1953)
Q Consensus 1078 Vvvy-~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~k--ikWd~VIIDEAHrLKN~~-SKlsraLk~L~a 1150 (1953)
..+. .|.- .+ ...+..-...|+||-++.+-.-.-. -.+ -+..|||+||.|.+.|.. ..++..+-.+..
T Consensus 587 rg~sl~g~l-tq----EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 587 RGVSLLGDL-TQ----EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred cchhhHhhh-hH----HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC
Confidence 2221 1211 10 0112234778999999877533111 111 157899999999998854 556665555544
Q ss_pred ceeEEecccCCCCCHHHHHHHHh
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLN 1173 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLn 1173 (1953)
--.|+|+|| .+++..+.-+++
T Consensus 662 CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 662 CPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred CCeeEEecc--cCCHHHHHHHHH
Confidence 457889999 477777777777
No 155
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.44 E-value=3.2e-06 Score=111.56 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=53.2
Q ss_pred ccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHHHhhhc----ccceeEEecccCCCC--CHHHHHH
Q 000169 1099 LKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTPLQN--DLKELWS 1170 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L----~a~~RLLLTGTPLQN--nL~ELwS 1170 (1953)
....|+++|...+..|. ..+.--.+..|||||||++.. ++.-.-.+..| +..+..++|+.|-.. ....|-.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~ 84 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLET 84 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHH
Confidence 34579999999998874 334445788999999999964 33333344444 344689999999763 4455666
Q ss_pred HHhhhccc
Q 000169 1171 LLNLLLPE 1178 (1953)
Q Consensus 1171 LLnFLlP~ 1178 (1953)
++.-|.-.
T Consensus 85 vmk~L~i~ 92 (814)
T TIGR00596 85 KMRNLFLR 92 (814)
T ss_pred HHHHhCcC
Confidence 66655443
No 156
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.42 E-value=2.5e-06 Score=105.40 Aligned_cols=107 Identities=26% Similarity=0.322 Sum_probs=84.5
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCe-EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEE
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGik-ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVI 1420 (1953)
..|+.|+.||.. -+-.+...+..+|.. +++|.|+.+++.|..--..||+++++|.| |++++|.|.||||. .+.||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeecccccccccc-eeEEE
Confidence 578889999863 233345556666665 99999999999999999999998888776 77889999999984 78999
Q ss_pred EcCCC---------CCchhHHhhhhcccccCCc---ceEEEEEE
Q 000169 1421 IYDPD---------PNPKNEEQAVARAHRIGQK---REVKVIYM 1452 (1953)
Q Consensus 1421 ifDpp---------WNP~~d~QAiGRAhRIGQK---KeV~VyrL 1452 (1953)
||+.- -...+..|--|||+|.|.+ ..|+.++.
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 98875 3456678999999999876 34555543
No 157
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.40 E-value=0.00013 Score=96.16 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHhhc----CCCCccEEEEec
Q 000169 1330 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNS----HDSDCFIFLLSI 1404 (1953)
Q Consensus 1330 LelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIerFNs----~ds~ifVfLLST 1404 (1953)
...+.+.|..+...+.++|||+.....++.+.+.|... ++. +.+.|. ..|..+++.|.. ++. .+|+++
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~---~VL~g~ 592 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG---SVLFGL 592 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC---eEEEEe
Confidence 33455555555446667888888888888888888643 333 334554 357788877764 222 378888
Q ss_pred cccccccCCcc--CCeEEEcCCCC
Q 000169 1405 RAAGRGLNLQS--ADTVIIYDPDP 1426 (1953)
Q Consensus 1405 rAGGeGLNLQa--ADtVIifDppW 1426 (1953)
....+|||++. +.+|||.-.|+
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCC
Confidence 99999999986 78999988776
No 158
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.32 E-value=3.5e-05 Score=101.93 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE
Q 000169 1344 GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1344 GhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
..-+|||-.-...++.+.+.|.. ..+.++-|+|..+.++..++ |+......+-+++||.++.++|.+..+-+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45689998888888877777776 45778899999999887764 554333445589999999999999999888
Q ss_pred E--------EcCCCC----------CchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1420 I--------IYDPDP----------NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1420 I--------ifDppW----------NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
| .||+-- +-+...||-|||+|.+-. .+|+|.+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pG---icyRLys 385 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPG---ICYRLYS 385 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCc---eEEEecC
Confidence 7 343322 223455777877776643 4566644
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.30 E-value=1.9e-05 Score=102.62 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1329 KLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
+...+..|+..| ..|++|.|||......+++++++...+.+++.++|..+..+. +.|. ++.| ++=|.+..
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W~----~~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESWK----KYDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cccc----ceeE-EEEeceEE
Confidence 334455555554 579999999999999999999999999999999998776633 3343 4555 56667888
Q ss_pred cccCCcc--CCeEEEc--CCCCCchh--HHhhhhcccccCCcceEEEEEE
Q 000169 1409 RGLNLQS--ADTVIIY--DPDPNPKN--EEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1409 eGLNLQa--ADtVIif--DppWNP~~--d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
.||++-. -|.|+.| .....|.. ..|.+||+..+. ++++.||.=
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 8999875 4666655 33344554 689999998888 557766653
No 160
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.24 E-value=1e-05 Score=107.46 Aligned_cols=171 Identities=18% Similarity=0.178 Sum_probs=107.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HH---------HHHHHHCCC--CeEEEEecch--
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WK---------SELHKWLPS--VSCIYYVGAK-- 1085 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~---------~Ef~KwaPs--lkVvvy~Gs~-- 1085 (1953)
++..+.++||+|||.+++.+|.+|.... .+..+|||||...+.. .. .-|...+++ +...+|....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 4667899999999999999999987643 4578999999754322 22 123333433 4455565432
Q ss_pred -hhHhH---HHHHHHhhc-----cccEEEEeHHHHHhhhh--c----c--cc--cCc-------cEEEcccccccCCchh
Q 000169 1086 -DQRSR---LFSQEVAAL-----KFNVLVTTYEFIMYDRS--K----L--SK--VDW-------KYIIIDEAQRMKDRES 1139 (1953)
Q Consensus 1086 -deRk~---l~~qei~~~-----~fdVVITTYEsL~kd~s--~----L--~k--ikW-------d~VIIDEAHrLKN~~S 1139 (1953)
..|.. ......... ..+|+|+|.+.|.++.. . + .. ..| -+|||||.|++.. ..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DN 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-ch
Confidence 11111 111111222 57999999999876421 1 0 11 122 3799999999964 34
Q ss_pred HHHHHhhhcccceeEEecccCCC-------C--CHHHHHHHHhhhcccccCChHHHHhhhcCCcccC
Q 000169 1140 VLARDLDRYRCQRRLLLTGTPLQ-------N--DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKE 1197 (1953)
Q Consensus 1140 KlsraLk~L~a~~RLLLTGTPLQ-------N--nL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~ 1197 (1953)
+.+.++..+...+.|..|||--. | .-.++++++.-| +..+.|...+.+-+...
T Consensus 218 k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~V~ 279 (986)
T PRK15483 218 KFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVDIF 279 (986)
T ss_pred HHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEEEe
Confidence 57788899999999999999533 1 112355555544 45788888877666543
No 161
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.14 E-value=0.00015 Score=95.98 Aligned_cols=111 Identities=17% Similarity=0.272 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhc--CCeeEEeechhHHHHHHHHHHHH----c---CCeEEeecCCCCHHHHHHHHHHhhcCCCCccE
Q 000169 1329 KLWILDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQW----R---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399 (1953)
Q Consensus 1329 KLelLdrIL~kLkat--GhKVLIFSQft~~LDILed~L~~----r---GikylRLDGsTs~eeRqeaIerFNs~ds~ifV 1399 (1953)
...++..++..+... ...+|||-.-...+..+.+.|.. . .+-+..+|+.++..+.+.+ |+.+-.+++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 445555555555433 35799999887777777777653 2 2567789999998776654 5655566777
Q ss_pred EEEeccccccccCCccCCeEE--------EcCCCC----------CchhHHhhhhcccccC
Q 000169 1400 FLLSIRAAGRGLNLQSADTVI--------IYDPDP----------NPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1400 fLLSTrAGGeGLNLQaADtVI--------ifDppW----------NP~~d~QAiGRAhRIG 1442 (1953)
+|++|..+...|.+.++-+|| .||+-- +-..-.||.|||+|.-
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~ 533 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR 533 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc
Confidence 999999999999999877775 355432 3445679999998864
No 162
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.11 E-value=2.4e-05 Score=99.19 Aligned_cols=141 Identities=22% Similarity=0.228 Sum_probs=90.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~KwaPslk 1077 (1953)
.+|-|+|..++.-+ .++...++..-|-.|||+.|--.|+..+.. ..+++.-.|-..|+| =.+||..-|.++-
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 48999999988544 457778888889999999986666554432 236777778665655 4567766655432
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEcccccccCCchhH--HHHHhhhcc-c
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDRESV--LARDLDRYR-C 1150 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAHrLKN~~SK--lsraLk~L~-a 1150 (1953)
.. .|.-. ...+...+|.|-+.++.- ...+..+.| ||+||.|+|+..... +-..+.-++ .
T Consensus 201 LM--TGDVT----------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 201 LM--TGDVT----------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred ee--eccee----------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEecccc
Confidence 22 22211 023456788888887643 345555566 899999999864332 222333333 3
Q ss_pred ceeEEecccC
Q 000169 1151 QRRLLLTGTP 1160 (1953)
Q Consensus 1151 ~~RLLLTGTP 1160 (1953)
-+-++||||-
T Consensus 267 vr~VFLSATi 276 (1041)
T KOG0948|consen 267 VRFVFLSATI 276 (1041)
T ss_pred ceEEEEeccC
Confidence 3568899993
No 163
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.09 E-value=0.00037 Score=88.79 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=71.9
Q ss_pred eeEEeechhHHHHHHHHHHHHc----CC----eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCC
Q 000169 1346 RVLLFSTMTKLLDILEEYLQWR----QL----VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417 (1953)
Q Consensus 1346 KVLIFSQft~~LDILed~L~~r----Gi----kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaAD 1417 (1953)
-+|||-.-.+..+.+.+.|... +- -++-++|+++.++..++ |.....+++-+++||..+.+.|.+...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5788887777666666666544 21 25678999999886544 5554556788999999999999999988
Q ss_pred eEE--------EcCCCCC-------chhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1418 TVI--------IYDPDPN-------PKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1418 tVI--------ifDppWN-------P~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
+|| .|++--- |..-.||.-|++|.|.+.+-.+|||.+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeee
Confidence 875 3444111 112335555566666666778888866
No 164
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.07 E-value=5.5e-05 Score=98.72 Aligned_cols=153 Identities=19% Similarity=0.136 Sum_probs=90.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--C
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--S 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~KwaP--s 1075 (1953)
.|+++|.+++.-= ....+.|.|.+.+++.|||+++=.+++. ++. ..+.+|.|.|--.+.+ =..++.-+.- +
T Consensus 223 ~~fewq~ecls~~--~~~e~~nliys~Pts~gktlvaeilml~~~l~---~rr~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLSLP--RLLERKNLIYSLPTSAGKTLVAEILMLREVLC---RRRNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhcch--hhhcccceEEeCCCccchHHHHHHHHHHHHHH---HhhceeEecceeehhHHHHhhhhhhccccC
Confidence 5778888877422 2236778899999999999887554433 333 2235788888654444 3333444432 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccc----cCccEEEcccccccCCc--hhHHHHHhhhc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKDR--ESVLARDLDRY- 1148 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~k----ikWd~VIIDEAHrLKN~--~SKlsraLk~L- 1148 (1953)
+.+-.|.|.-.. ......-.|.|+|-+.-......|-. ....+|||||-|-+... +.-+-..|..+
T Consensus 298 ~~ve~y~g~~~p-------~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~ 370 (1008)
T KOG0950|consen 298 FPVEEYAGRFPP-------EKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKIL 370 (1008)
T ss_pred CcchhhcccCCC-------CCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHH
Confidence 555556653221 11223457999999876555433322 24578999999998542 22222222221
Q ss_pred ---ccc--eeEEecccCCCCC
Q 000169 1149 ---RCQ--RRLLLTGTPLQND 1164 (1953)
Q Consensus 1149 ---~a~--~RLLLTGTPLQNn 1164 (1953)
... ..+++|+|-.+|.
T Consensus 371 y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 371 YENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred HhccccceeEeeeecccCChH
Confidence 222 3799999975443
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.02 E-value=4e-05 Score=82.65 Aligned_cols=125 Identities=21% Similarity=0.178 Sum_probs=69.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
-+|-.-+|.|||-.++--+.. +.-...+++||+.|+.++. +|+.+...+..+. +.-..-.+ ...+..
T Consensus 7 ~~~d~hpGaGKTr~vlp~~~~--~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~~-~~t~~~~~-------~~~g~~ 73 (148)
T PF07652_consen 7 TVLDLHPGAGKTRRVLPEIVR--EAIKRRLRVLVLAPTRVVA---EEMYEALKGLPVR-FHTNARMR-------THFGSS 73 (148)
T ss_dssp EEEE--TTSSTTTTHHHHHHH--HHHHTT--EEEEESSHHHH---HHHHHHTTTSSEE-EESTTSS-----------SSS
T ss_pred eEEecCCCCCCcccccHHHHH--HHHHccCeEEEecccHHHH---HHHHHHHhcCCcc-cCceeeec-------cccCCC
Confidence 467778999999877653322 2223456899999999764 4555555455432 22221111 123556
Q ss_pred cEEEEeHHHHHhhh-hcccccCccEEEcccccccCCchhHHHHHh-hhcc---cceeEEecccC
Q 000169 1102 NVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARDL-DRYR---CQRRLLLTGTP 1160 (1953)
Q Consensus 1102 dVVITTYEsL~kd~-s~L~kikWd~VIIDEAHrLKN~~SKlsraL-k~L~---a~~RLLLTGTP 1160 (1953)
-|-++||.++.+.. ......+|++||+||||-. ++.+-..+.+ ..+. ....+++||||
T Consensus 74 ~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred cccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 78889998876542 2334468999999999985 4555433332 2331 13589999999
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.02 E-value=5.5e-05 Score=89.86 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+.||.|++-+..+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999888889999999999999999998776543332222 13777888765 444545555544
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.02 E-value=5.5e-05 Score=89.86 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+.||.|++-+..+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999888889999999999999999998776543332222 13777888765 444545555544
No 168
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.99 E-value=0.0024 Score=85.68 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHHHhhc----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC---------------------------
Q 000169 1002 RDYQIVGLQWMLSLYN----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY--------------------------- 1050 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~----n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~--------------------------- 1050 (1953)
+-+|-++++.+..+.. .+.=|+--..||+|||+.=.-++..|......+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 4589999998887654 233356667899999998866665554322211
Q ss_pred CCeEEEechHHHH----HHHHHHH-----------HHCCCCe---EEEEecchhhHhH--HHH---HHHhhccccEEEEe
Q 000169 1051 GPHLIIVPNAVLV----NWKSELH-----------KWLPSVS---CIYYVGAKDQRSR--LFS---QEVAALKFNVLVTT 1107 (1953)
Q Consensus 1051 GP~LIVVP~SLL~----QW~~Ef~-----------KwaPslk---Vvvy~Gs~deRk~--l~~---qei~~~~fdVVITT 1107 (1953)
.-.-|++=.+.+. .+..... .|+.... ++.|.|.-++-.- .+. .....-...|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 1123444433222 2333211 1222222 4556664322110 000 01122345799999
Q ss_pred HHHHHhhhhc---------ccccCccEEEcccccccCCchh-HHHHHhh--hcccceeEEecccCCCCCHHHH
Q 000169 1108 YEFIMYDRSK---------LSKVDWKYIIIDEAQRMKDRES-VLARDLD--RYRCQRRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1108 YEsL~kd~s~---------L~kikWd~VIIDEAHrLKN~~S-KlsraLk--~L~a~~RLLLTGTPLQNnL~EL 1168 (1953)
.+.++.-... +...--..|||||.|-+-.... .+.+.|. .....+.++||||--..-...|
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 9988754321 1223457899999998853332 2333333 2345678999999644433333
No 169
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.91 E-value=7.4e-05 Score=82.83 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=84.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH-----HhCCCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME-----FKGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle-----~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+|-+.|.+++..++. ... .++..+.|+|||-+..+++..++. .....+++||++|+. .+.+-...+.++
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~ 76 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKL 76 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhh
Confidence 377899999976664 444 788999999999888888877742 245667899999966 677777777661
Q ss_pred ------CCCCeEEEEecch---h-hHhHH---------H---------------------------------H-------
Q 000169 1073 ------LPSVSCIYYVGAK---D-QRSRL---------F---------------------------------S------- 1093 (1953)
Q Consensus 1073 ------aPslkVvvy~Gs~---d-eRk~l---------~---------------------------------~------- 1093 (1953)
.+...++.+.... . ..... . .
T Consensus 77 ~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (236)
T PF13086_consen 77 LDEDGKVYKPKIIRLGSEEEKIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKIRLSELKEEKKKLKKSIKRLRKEL 156 (236)
T ss_dssp -------TT--EEE---GGTTS--TTGGGBHHHHHHTTT-----------THHHCHHHHHHHHHHHCCSSCHHHHHHHHH
T ss_pred ccccccccccchhhhcccccccccccccccccccccccccccchhhhHHHHHHHHhhhhhhhhhhhhhcchhcccccccc
Confidence 1233333332221 0 00000 0 0
Q ss_pred -------HHHhhccccEEEEeHHHHHhhhhccccc--CccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1094 -------QEVAALKFNVLVTTYEFIMYDRSKLSKV--DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1094 -------qei~~~~fdVVITTYEsL~kd~s~L~ki--kWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
.......++||++|...+. ...+... .|++||||||-.+.-.. ..-.| .....+++|-|=|.|-
T Consensus 157 ~~~~~~~~~~~l~~~~vi~~T~~~~~--~~~~~~~~~~~d~vIvDEAsq~~e~~--~l~~l--~~~~~~~vlvGD~~QL 229 (236)
T PF13086_consen 157 EKIREELRRFILKEADVIFTTLSSAA--SPFLSNFKEKFDVVIVDEASQITEPE--ALIPL--SRAPKRIVLVGDPKQL 229 (236)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETCGGG---CCGTT-----SEEEETTGGGS-HHH--HHHHH--TTTBSEEEEEE-TTS-
T ss_pred cccccchhhhhcccccccccccccch--hhHhhhhcccCCEEEEeCCCCcchHH--HHHHH--HHhCCEEEEECChhhc
Confidence 0011235789999987773 2344444 79999999998774222 11122 2233788888887664
No 170
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.89 E-value=0.00016 Score=93.62 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=102.3
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH--------HHHHH-HHHCCCC--eEEEEec
Q 000169 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN--------WKSEL-HKWLPSV--SCIYYVG 1083 (1953)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q--------W~~Ef-~KwaPsl--kVvvy~G 1083 (1953)
++...+|+=+-+|||+|||.+.+-+|..|....|. -+++||||.-.+.- -.+.| ..++.+. ..++|.
T Consensus 70 ~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~-~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~- 147 (985)
T COG3587 70 RIDDKLNIDILMETGTGKTYTYLRTMFELHKKYGL-FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD- 147 (985)
T ss_pred cCCCcceeeEEEecCCCceeeHHHHHHHHHHHhCc-eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec-
Confidence 44556677788999999999999999888765443 48999999754321 22334 4444443 333332
Q ss_pred chhhHhHHHHHHHhhccccEEEEeHHHHHhh---hhc---------------------ccccCccEEEcccccccCCchh
Q 000169 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD---RSK---------------------LSKVDWKYIIIDEAQRMKDRES 1139 (1953)
Q Consensus 1084 s~deRk~l~~qei~~~~fdVVITTYEsL~kd---~s~---------------------L~kikWd~VIIDEAHrLKN~~S 1139 (1953)
....... ......+.|+|.+...+.++ ... |... --+|||||-|++... .
T Consensus 148 -~~~~~~~---~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~-~ 221 (985)
T COG3587 148 -EDIEKFK---FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD-D 221 (985)
T ss_pred -hHHHHHh---hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc-h
Confidence 2111111 22345678999998888765 111 1111 137999999999865 7
Q ss_pred HHHHHhhhcccceeEEecccCCCCCHHHHHH-HHhhhcccccCChHHHHhhhcCCcc
Q 000169 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWS-LLNLLLPEVFDNRKAFHDWFSQPFQ 1195 (1953)
Q Consensus 1140 KlsraLk~L~a~~RLLLTGTPLQNnL~ELwS-LLnFLlP~iF~S~k~F~e~F~kPf~ 1195 (1953)
+.+.++..+.+...|=.+||= .+-|. ++. .+++.+.|.....+.+.
T Consensus 222 k~~~~i~~l~pl~ilRfgATf-----kd~y~~l~y-----rLDsi~Af~~~LVK~I~ 268 (985)
T COG3587 222 KTYGAIKQLNPLLILRFGATF-----KDEYNNLVY-----RLDSIDAFNQKLVKQIR 268 (985)
T ss_pred HHHHHHHhhCceEEEEecccc-----hhhhcCeeE-----EeeHHhhhhhhhhhhee
Confidence 889999999888877777873 22222 222 23556777776655443
No 171
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.81 E-value=0.023 Score=72.76 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=68.5
Q ss_pred CeeEEeechhHHHHHHHHHHH----Hc-----CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc
Q 000169 1345 HRVLLFSTMTKLLDILEEYLQ----WR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS 1415 (1953)
Q Consensus 1345 hKVLIFSQft~~LDILed~L~----~r-----GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa 1415 (1953)
.-+|||-.-.+.++..++.|. .. .+-++-|+.+.+.+...++ |..--.+++-++|+|..+.+.|.+.+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecC
Confidence 447777655554444444333 22 2447788999998877655 44323346678999999999999998
Q ss_pred CCeEEEcCCCC--------------------CchhHHhhhhcccccCCcceEEEEE
Q 000169 1416 ADTVIIYDPDP--------------------NPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1416 ADtVIifDppW--------------------NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.+|| ||-+ +-+.-.||-|||+|.|-.|--++|.
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt 604 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYT 604 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeec
Confidence 88886 4433 2344679999999998776555554
No 172
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.80 E-value=0.00028 Score=92.27 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=84.9
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecch--hhHhHHHHHHHhhccccEEE
Q 000169 1029 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLV 1105 (1953)
Q Consensus 1029 GLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy~Gs~--deRk~l~~qei~~~~fdVVI 1105 (1953)
|+|||-..+.+|...+.. .+.+||+||.. ++.++...|...|+...+.+|+..- .+|...+. .+..+...|||
T Consensus 170 GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~-~~~~G~~~IVi 245 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWL-AVLRGQARVVV 245 (665)
T ss_pred CCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH-HHhCCCCcEEE
Confidence 999999999999887752 34699999975 8899999999999867788888743 34444443 34567789999
Q ss_pred EeHHHHHhhhhcccccCccEEEccccccc--CCchhHH--HHHhh----hcccceeEEecccC
Q 000169 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVL--ARDLD----RYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1106 TTYEsL~kd~s~L~kikWd~VIIDEAHrL--KN~~SKl--sraLk----~L~a~~RLLLTGTP 1160 (1953)
.|...+. +.--+..+|||||=|.- |...... .+.+. .+..-..++-|+||
T Consensus 246 GtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 246 GTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred EcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 9997553 22236789999998864 3322211 11122 22233467779999
No 173
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.0057 Score=80.87 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=91.9
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..+..-+......|..|||.+.....-+.+...|...|++...|+-.-. .|+.-+-.+- +..-.+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A---G~~gaVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA---GQPGAVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc---CCCCcccccc
Confidence 3457888888888888999999999999999999999999999999988877664 4444443333 2222467899
Q ss_pred cccccccCCcc-CC----------eEEEcCCCCCchhHHhhhhcccccCCcce
Q 000169 1405 RAAGRGLNLQS-AD----------TVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1405 rAGGeGLNLQa-AD----------tVIifDppWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
..+|+|-|+.- .+ +||=-...-+-..+.|--||++|.|-...
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~ 537 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGS 537 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcch
Confidence 99999999874 32 56777777788888899999999994433
No 174
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.62 E-value=0.0016 Score=82.57 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=53.3
Q ss_pred CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCC----CCCc--------------h
Q 000169 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP----DPNP--------------K 1429 (1953)
Q Consensus 1368 GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDp----pWNP--------------~ 1429 (1953)
++.++-|...++.+-..++ |.....+.+-++++|..+.+.|.++..-+||=... -+|| +
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5566667777776655443 55556677889999999999999999888874221 1233 2
Q ss_pred hHHhhhhcccccCCcceEEEEEEeh
Q 000169 1430 NEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1430 ~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
.-.||-|||+| +.+=..|++.|
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYT 695 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYT 695 (1042)
T ss_pred cchhhccccCC---CCCcceeeehh
Confidence 33455555555 55656677755
No 175
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00072 Score=86.86 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=83.6
Q ss_pred HHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH---HhCCCCCeEEEechHHHH-----HHHHHHHHHCCCCeE-EEEec
Q 000169 1013 LSLYNNKLNGILADEMGLGKTVQVMALIAYLME---FKGNYGPHLIIVPNAVLV-----NWKSELHKWLPSVSC-IYYVG 1083 (1953)
Q Consensus 1013 lsL~~n~lnGILADEMGLGKTIQAIALIa~Lle---~kg~~GP~LIVVP~SLL~-----QW~~Ef~KwaPslkV-vvy~G 1083 (1953)
.+..+.+.-.|+|.|||+|||-|.=-|+...-. .....|-+=|--|..+.. .-..|+..+...+.. +-|.|
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ 344 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDG 344 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEecc
Confidence 345566777899999999999998665533210 011112222333765432 234455553223333 33445
Q ss_pred chhhHhHHHHHHHhhccccEEEEeHHHHHhhhh-cccccCccEEEcccccccCCchhH-----HHHHhh---hc------
Q 000169 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQRMKDRESV-----LARDLD---RY------ 1148 (1953)
Q Consensus 1084 s~deRk~l~~qei~~~~fdVVITTYEsL~kd~s-~L~kikWd~VIIDEAHrLKN~~SK-----lsraLk---~L------ 1148 (1953)
+.. .+-.|.++|-+.|+++.. .|.-.++..|||||||.= +-++- +++.+. .+
T Consensus 345 ti~------------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 345 TIG------------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred ccC------------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 432 345789999999998753 344458999999999963 22221 222221 11
Q ss_pred -ccceeEEecccCCCCCHHHHHHHHhh
Q 000169 1149 -RCQRRLLLTGTPLQNDLKELWSLLNL 1174 (1953)
Q Consensus 1149 -~a~~RLLLTGTPLQNnL~ELwSLLnF 1174 (1953)
+.-..|+||||---.++.|---||-.
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi 438 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPI 438 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCC
Confidence 13357899999755554443334433
No 176
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.29 E-value=0.0003 Score=83.22 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=57.6
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccC--------CeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh--
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA-- 1454 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaA--------DtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT-- 1454 (1953)
...+.|+++. ..|+|+| +||++||.|++- .+-|.+.++|+....+|..||+||-||.....+..+++
T Consensus 52 ~e~~~F~~g~--k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGE--KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCC--ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 4567899754 4466665 999999999962 24478999999999999999999999998765555544
Q ss_pred -hhhhhhhhhh
Q 000169 1455 -VVDKISSHQK 1464 (1953)
Q Consensus 1455 -VEEkI~s~q~ 1464 (1953)
.|.++...+.
T Consensus 129 ~gE~Rfas~va 139 (278)
T PF13871_consen 129 PGERRFASTVA 139 (278)
T ss_pred HHHHHHHHHHH
Confidence 4444444433
No 177
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.29 E-value=0.0002 Score=60.93 Aligned_cols=34 Identities=44% Similarity=0.674 Sum_probs=32.0
Q ss_pred CcchhHHHHHHHHHHHhhccccCCCCChHHHHHhc
Q 000169 473 GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507 (1953)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1953)
-||..|++.||+||+|||-|.+|.. +|++|+.+|
T Consensus 2 ~FT~~Ql~~L~~Qi~ayK~l~~~~p-VP~~l~~~I 35 (37)
T PF08880_consen 2 PFTPAQLQELRAQILAYKYLARNQP-VPPQLQQAI 35 (37)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHhh
Confidence 5999999999999999999999887 999999887
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.08 E-value=0.00095 Score=78.41 Aligned_cols=149 Identities=20% Similarity=0.142 Sum_probs=85.5
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC---e
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV---S 1077 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPsl---k 1077 (1953)
+-..|...+.|+.. +...++.-+.|+|||..++++....+.. +....++|+-|.-.. .|...|.|+- +
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 45678888887764 4467888999999999999988865532 334444444344222 2233333321 0
Q ss_pred EEEEecc-hhhHhHH-----HHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccc
Q 000169 1078 CIYYVGA-KDQRSRL-----FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (1953)
Q Consensus 1078 Vvvy~Gs-~deRk~l-----~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~ 1151 (1953)
...|... -+.-..+ ....+....-.|-|.+..+++.. . +.-++||||||+++.- ......+.++...
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr-t----l~~~~vIvDEaqn~~~--~~~k~~ltR~g~~ 203 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGR-T----FENAVVILDEAQNVTA--AQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCC-c----ccCCEEEEechhcCCH--HHHHHHHhhcCCC
Confidence 0000000 0000000 00001112334666666666432 2 3458999999999853 5556667788888
Q ss_pred eeEEecccCCCCCH
Q 000169 1152 RRLLLTGTPLQNDL 1165 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL 1165 (1953)
.+++++|-|-|-++
T Consensus 204 sk~v~~GD~~QiD~ 217 (262)
T PRK10536 204 VTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEeCChhhccC
Confidence 99999999977663
No 179
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.01 E-value=0.013 Score=69.65 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=71.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kwa 1073 (1953)
+..+++-|+.|+--|. .|-|.=..||=|||+++. +.+++....+ .++=||+-+..|. +|...|-+++
T Consensus 75 g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~-l~a~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAA-LPAALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHHH------TTSEEEESTTSHHHHHHH-HHHHHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHH-HHHHHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 4456667888875442 244888999999999985 4444443333 4677777777554 3888888877
Q ss_pred CCCeEEE-Eecch-hhHhHHHHHHHhhccccEEEEeHHHHHhh---------hhcccccCccEEEccccccc
Q 000169 1074 PSVSCIY-YVGAK-DQRSRLFSQEVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRM 1134 (1953)
Q Consensus 1074 PslkVvv-y~Gs~-deRk~l~~qei~~~~fdVVITTYEsL~kd---------~s~L~kikWd~VIIDEAHrL 1134 (1953)
+ +.+-+ +.+.. +.|+. ....+|+-+|-..+.-| ........++++||||++.+
T Consensus 146 G-lsv~~~~~~~~~~~r~~-------~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 G-LSVGIITSDMSSEERRE-------AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp T---EEEEETTTEHHHHHH-------HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred h-hccccCccccCHHHHHH-------HHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 4 44444 33333 23322 22457999988776543 11112347899999999876
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.90 E-value=0.0042 Score=71.07 Aligned_cols=147 Identities=25% Similarity=0.267 Sum_probs=71.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH-----HHHHHCCC
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS-----ELHKWLPS 1075 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~-----Ef~KwaPs 1075 (1953)
+-++|...++.|.. ....++.-..|+|||+.+++..+.++.. +...+++|+-|..-+..+.- .-+|..|-
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 44689998887773 4457888999999999999998888764 67777777777653322110 00111111
Q ss_pred CeEEE-----EecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccc
Q 000169 1076 VSCIY-----YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (1953)
Q Consensus 1076 lkVvv-----y~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a 1150 (1953)
+..+. +.+. .... .......|-+.+..+++-. .++..+||||||+++. ...+...|.++..
T Consensus 80 ~~p~~d~l~~~~~~-~~~~------~~~~~~~Ie~~~~~~iRGr-----t~~~~~iIvDEaQN~t--~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 80 LRPIYDALEELFGK-EKLE------ELIQNGKIEIEPLAFIRGR-----TFDNAFIIVDEAQNLT--PEELKMILTRIGE 145 (205)
T ss_dssp THHHHHHHTTTS-T-TCHH------HHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG----HHHHHHHHTTB-T
T ss_pred HHHHHHHHHHHhCh-HhHH------HHhhcCeEEEEehhhhcCc-----cccceEEEEecccCCC--HHHHHHHHcccCC
Confidence 00000 0000 0000 1112334555555444321 2356899999999984 3445556778888
Q ss_pred ceeEEecccCCCCCHH
Q 000169 1151 QRRLLLTGTPLQNDLK 1166 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ 1166 (1953)
..+++++|-|.|.+..
T Consensus 146 ~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 146 GSKIIITGDPSQIDLP 161 (205)
T ss_dssp T-EEEEEE--------
T ss_pred CcEEEEecCceeecCC
Confidence 8999999999887654
No 181
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=96.63 E-value=0.0071 Score=57.84 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000169 808 AMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (1953)
Q Consensus 808 ~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~e~~kr~~~~~~~rl~~lk~ 870 (1953)
......|..|+.+.++|.+.+...........++|..||...+++..++.++++++||++|++
T Consensus 11 ~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 11 THHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 334456899999999999988888777778899999999999999999999999999999974
No 182
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.52 E-value=0.0079 Score=73.44 Aligned_cols=90 Identities=24% Similarity=0.220 Sum_probs=54.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH-HHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS-ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~-Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
|+--..|+|||+.++.++..+.. .......+++|++..+.+... .|.+-. .....
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------------------~~~~~ 60 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKY-----------------------NPKLK 60 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhc-----------------------ccchh
Confidence 56677999999999999888721 233456788888776655443 444322 00111
Q ss_pred cEEEEeHHHHHhhhh--cccccCccEEEcccccccCC
Q 000169 1102 NVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN 1136 (1953)
...+..+..++.... ......+++|||||||++..
T Consensus 61 ~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 61 KSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 222333333333222 23345799999999999975
No 183
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.52 E-value=0.011 Score=73.84 Aligned_cols=116 Identities=17% Similarity=0.166 Sum_probs=91.9
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH----HcCC----eEEeecCCCCHHHHHHHHHHhhcCCCCc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL----VYRRIDGTTSLEDRESAIVDFNSHDSDC 1397 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~----~rGi----kylRLDGsTs~eeRqeaIerFNs~ds~i 1397 (1953)
.+.|+.-...|+..+...|-|+|-||..+.+++++-...+ .-+- .+..+.|+...++|.++-.+...++-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 3456666677888888899999999999998877654433 2221 13346788899999998877664332
Q ss_pred cEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCc
Q 000169 1398 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (1953)
Q Consensus 1398 fVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQK 1444 (1953)
.-+++|.|..+|||+-..|.||++..|.+..++.|..|||+|-...
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 3689999999999999999999999999999999999999998754
No 184
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.46 E-value=0.036 Score=62.69 Aligned_cols=125 Identities=25% Similarity=0.279 Sum_probs=68.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVv 1079 (1953)
+|-+-|.+++..++. ....-.+|.-..|+|||.....++ ..+...+ ..+++++|+..... ++.+-+
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~-~~~~~~g--~~v~~~apT~~Aa~---~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALA-EALEAAG--KRVIGLAPTNKAAK---ELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHH-HHHHHTT----EEEEESSHHHHH---HHHHHH------
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHH-HHHHhCC--CeEEEECCcHHHHH---HHHHhh------
Confidence 478899999998875 122235777889999998665544 4444333 68899999874432 122110
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhccc------ccCccEEEcccccccCCchhHHHHHhhhccc-ce
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS------KVDWKYIIIDEAQRMKDRESVLARDLDRYRC-QR 1152 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~------kikWd~VIIDEAHrLKN~~SKlsraLk~L~a-~~ 1152 (1953)
.+-..|...+........ ....++||||||-.+-+ ..+...+..... ..
T Consensus 67 ----------------------~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 67 ----------------------GIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARLLRLAKKSGA 122 (196)
T ss_dssp ----------------------TS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-T-T-
T ss_pred ----------------------CcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHHHHHHHhcCC
Confidence 011233333332211110 23568999999998843 334444444433 56
Q ss_pred eEEecccCCC
Q 000169 1153 RLLLTGTPLQ 1162 (1953)
Q Consensus 1153 RLLLTGTPLQ 1162 (1953)
+++|.|-|-|
T Consensus 123 klilvGD~~Q 132 (196)
T PF13604_consen 123 KLILVGDPNQ 132 (196)
T ss_dssp EEEEEE-TTS
T ss_pred EEEEECCcch
Confidence 9999999865
No 185
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=96.40 E-value=0.011 Score=57.35 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000169 810 REKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (1953)
Q Consensus 810 r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~e~~kr~~~~~~~rl~~lk~ 870 (1953)
..-.|..++.|+++|.+.+...........+.|..||.+.++++.|+.++++++||++|++
T Consensus 13 ~d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 13 WDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3446899999999999987777667777889999999999999999999999999999963
No 186
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.36 E-value=0.71 Score=58.26 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=62.3
Q ss_pred CeeEEeechhHHHHHHHHHHHHc---------CCeEEeecCCCCHHHHHHHHHHh--hcCCCCccEEEEeccccccccCC
Q 000169 1345 HRVLLFSTMTKLLDILEEYLQWR---------QLVYRRIDGTTSLEDRESAIVDF--NSHDSDCFIFLLSIRAAGRGLNL 1413 (1953)
Q Consensus 1345 hKVLIFSQft~~LDILed~L~~r---------GikylRLDGsTs~eeRqeaIerF--Ns~ds~ifVfLLSTrAGGeGLNL 1413 (1953)
.-+|||-.....++...+.+... .++++-|+ +.+...+++-- +..+..-+-+++||..+...|.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 35788876655554444444311 23455555 22333322211 11122335689999999999888
Q ss_pred ccCCeEEEcCCC------CCch-----------hHHhhhhcccccCCcceEEEEEEeh
Q 000169 1414 QSADTVIIYDPD------PNPK-----------NEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1414 QaADtVIifDpp------WNP~-----------~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
.++-+|| ||- +||. .-.||.-|++|.|.+++=..|+|.+
T Consensus 330 dgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYt 385 (699)
T KOG0925|consen 330 DGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 385 (699)
T ss_pred ccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeec
Confidence 8776665 443 3443 3458888888889888877888765
No 187
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.27 E-value=0.0088 Score=65.85 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=67.9
Q ss_pred HHhcCCeeEEeechhHHHHHHHHHHHHcC----CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc--ccccccCC
Q 000169 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR--AAGRGLNL 1413 (1953)
Q Consensus 1340 LkatGhKVLIFSQft~~LDILed~L~~rG----ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr--AGGeGLNL 1413 (1953)
+...+.++|||+..-..++.+.+++...+ +.+..- + ...+..+++.|..... .+|+++. ...+|||+
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccC---eEEEEEecccEEEeecC
Confidence 34567899999999999999999988653 333322 2 3578899999997433 4788887 99999999
Q ss_pred cc--CCeEEEcCCCC-Cchh-----------------------------HHhhhhcccccCCcceEE
Q 000169 1414 QS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1414 Qa--ADtVIifDppW-NP~~-----------------------------d~QAiGRAhRIGQKKeV~ 1448 (1953)
.. +..||+.-.|+ +|.. ..|++||+.|-....-+.
T Consensus 78 ~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i 144 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVI 144 (167)
T ss_dssp ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEE
T ss_pred CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEE
Confidence 96 88999999986 3321 238999999977654443
No 188
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.25 E-value=0.0084 Score=61.71 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechHH-HHHHHHHHHHHCCC-CeEEEEecchhhHhHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNAV-LVNWKSELHKWLPS-VSCIYYVGAKDQRSRLFS 1093 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~SL-L~QW~~Ef~KwaPs-lkVvvy~Gs~deRk~l~~ 1093 (1953)
+..+++.-+.|+|||..+-.++..+.... ....-+.|-+|... ...+..++...+.. ... ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~---------- 70 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQ---------- 70 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cC----------
Confidence 34568889999999988877776654321 11112344445443 44555555443211 000 00
Q ss_pred HHHhhccccEEEEeHHHHHh-hhhcccccCccEEEcccccccCCchhHHHHHhhhc--ccceeEEecccC
Q 000169 1094 QEVAALKFNVLVTTYEFIMY-DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGTP 1160 (1953)
Q Consensus 1094 qei~~~~fdVVITTYEsL~k-d~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L--~a~~RLLLTGTP 1160 (1953)
+...+.. -...+....-.+|||||+|++. .......|..+ .....++|+|||
T Consensus 71 -------------~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 -------------TSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp --------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -------------CHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1111111 1122222333799999999983 24444555544 556689999999
No 189
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.17 E-value=0.003 Score=84.07 Aligned_cols=179 Identities=23% Similarity=0.312 Sum_probs=97.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCch--HHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLG--KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLG--KTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslk 1077 (1953)
.+.+||.....-....... ...++++.|+| ||+.+..++.+... .+.....++++|..+..+|..+...++..-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLNELAL--RVLIADEVGLGDLKTIEAGAILKELLL-RGEIKRVLILVPKTLRAQWVVELLEKFNIRL 160 (866)
T ss_pred ccCcchhhhhhhhhhhhhh--chhhcccccccccccccccccchHhhh-hhhhccceeccchHHHHHHHHHhhhhccccc
Confidence 4666666654333322222 26888999999 89998776665543 5566788999999999999999877632211
Q ss_pred EEEEec-chhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCc---cEEEcccccccCCch---------hH
Q 000169 1078 CIYYVG-AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDW---KYIIIDEAQRMKDRE---------SV 1140 (1953)
Q Consensus 1078 Vvvy~G-s~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikW---d~VIIDEAHrLKN~~---------SK 1140 (1953)
.++... ....... ............+++........ ...+....| +++++||+|.+.+.. ..
T Consensus 161 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (866)
T COG0553 161 AVLDKEGLRYLLKQ-YDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETL 239 (866)
T ss_pred hhhhhhhhhhhhhh-hcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhhh
Confidence 111111 1100000 00000000000033333333322 223344456 899999999997642 22
Q ss_pred HHHHhhhccc--------ceeEEecccCCCCCHHHHHHHHhhhcccccCC
Q 000169 1141 LARDLDRYRC--------QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1182 (1953)
Q Consensus 1141 lsraLk~L~a--------~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S 1182 (1953)
.+..+..... ...+++++||......+++....++.+..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 240 EYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred HHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 2333332211 12347899998888777776666666655544
No 190
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.02 E-value=0.062 Score=54.45 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhh
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA 1098 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~ 1098 (1953)
+...+|..+.|+|||..+-.++..+. ....+++++........+.........
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------ 71 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------------------------ 71 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------------------------
Confidence 55678999999999977666555443 122355555444433333322221110
Q ss_pred ccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC-chhHHHHHhhhcc------cceeEEecccCCC
Q 000169 1099 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYR------CQRRLLLTGTPLQ 1162 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~------a~~RLLLTGTPLQ 1162 (1953)
...... .........+|||||++++.. ....+...+..+. ....+++|+++..
T Consensus 72 ---------~~~~~~--~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLF--ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHH--HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000111 111123567999999999832 2233444444442 4567778877644
No 191
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.01 E-value=0.054 Score=71.39 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (1953)
..|-+.|..+|.+++. .....|+-...|+|||.+++.++..+.. .+ .++||++|+. .+.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~-~g--~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVK-RG--LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHH-cC--CCEEEEcCcHHHHHHHHHHHHh
Confidence 3688999999988764 2245688899999999999998888775 22 3899999987 46666666765
No 192
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.71 E-value=0.085 Score=67.87 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=88.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaPslkV 1078 (1953)
+|-.-|..+|...+. +.=.||-.+.|+|||++..+++..|.+. ..+|+||++|..+ +.|-...|.+- +++|
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--CceE
Confidence 677889999988875 4456899999999999998888888764 5689999999874 77777777764 3666
Q ss_pred EEEecchhhHh----------------------HHHHH-----------------------HHhhccccEEEEeHHHHHh
Q 000169 1079 IYYVGAKDQRS----------------------RLFSQ-----------------------EVAALKFNVLVTTYEFIMY 1113 (1953)
Q Consensus 1079 vvy~Gs~deRk----------------------~l~~q-----------------------ei~~~~fdVVITTYEsL~k 1113 (1953)
+-......+.. .+... .......+||.||--..
T Consensus 482 vRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A-- 559 (935)
T KOG1802|consen 482 VRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA-- 559 (935)
T ss_pred eeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc--
Confidence 55432221100 00000 00123456666664322
Q ss_pred hhhcccccCccEEEcccccccCCchhHHH
Q 000169 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1114 d~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
-...|.+++|..|+|||+-..--+.+.+-
T Consensus 560 gd~rl~~~kfr~VLiDEaTQatEpe~LiP 588 (935)
T KOG1802|consen 560 GDRRLSKFKFRTVLIDEATQATEPECLIP 588 (935)
T ss_pred cchhhccccccEEEEecccccCCcchhhh
Confidence 23456778999999999987655555433
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.70 E-value=0.079 Score=69.25 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechHHHHH-HHHHHHHHCCCCeEE
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVLVN-WKSELHKWLPSVSCI 1079 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~SLL~Q-W~~Ef~KwaPslkVv 1079 (1953)
+.|+.++...+. +.-.||.-..|+|||.++..++..+...... ...+++++|+.-... ..+-+......+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 789988877775 4557899999999999998888877654322 246889999874433 333333322111100
Q ss_pred EEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--------cccccCccEEEcccccccCCchhHHHHHhhhcccc
Q 000169 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--------KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (1953)
Q Consensus 1080 vy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--------~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~ 1151 (1953)
..... ...+-..|...+..... .-....+++||||||--+- ...+...+..+...
T Consensus 224 -----~~~~~----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 -----EALIA----------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLKALPPN 286 (586)
T ss_pred -----hhhhh----------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHHhcCCC
Confidence 00000 00111222222221100 0112368999999998873 33455566677777
Q ss_pred eeEEecccCCCC
Q 000169 1152 RRLLLTGTPLQN 1163 (1953)
Q Consensus 1152 ~RLLLTGTPLQN 1163 (1953)
.||+|.|=|-|-
T Consensus 287 ~rlIlvGD~~QL 298 (586)
T TIGR01447 287 TKLILLGDKNQL 298 (586)
T ss_pred CEEEEECChhhC
Confidence 899999987553
No 194
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.59 E-value=0.065 Score=68.71 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE 1068 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~E 1068 (1953)
..|-+-|..++.+++. +..=.|+-.+.|+|||.+..-+|..++..+ .++||.+|+. .+.|-.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 3677899999998875 212347788999999999999999888632 5889999987 47776663
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.51 E-value=0.066 Score=70.81 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL 1039 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIAL 1039 (1953)
.+.|+-|+.-+..+++......+|+|-++||+|||+.-|.-
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS 60 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCS 60 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHH
Confidence 36799999999999999999999999999999999876553
No 196
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.44 E-value=0.064 Score=62.47 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCC---
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS--- 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPs--- 1075 (1953)
..|||-|.+.+..|+.- ..+.|.++-.-||-|||-+.+=+++.++. .+ ..=+-+|||..++.+-..-+...+.+
T Consensus 22 iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-dg-~~LvrviVpk~Ll~q~~~~L~~~lg~l~~ 98 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALA-DG-SRLVRVIVPKALLEQMRQMLRSRLGGLLN 98 (229)
T ss_pred ceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHc-CC-CcEEEEEcCHHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999873 45678899999999999887777766664 22 23467888999999877777665543
Q ss_pred CeEEEEecchhhH------hHHHHH-HHhhccccEEEEeHHHHHh
Q 000169 1076 VSCIYYVGAKDQR------SRLFSQ-EVAALKFNVLVTTYEFIMY 1113 (1953)
Q Consensus 1076 lkVvvy~Gs~deR------k~l~~q-ei~~~~fdVVITTYEsL~k 1113 (1953)
-.++.+.-+.... ..+... ......-.|+|+|++.+..
T Consensus 99 r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 99 RRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred CeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 2222222111111 111100 1123455799999998753
No 197
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=95.29 E-value=0.0015 Score=67.45 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=66.8
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|++..+|+|+.++++|++++. +-..|+.|+|....|-..|+.. .||||+ .+-
T Consensus 20 ~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a 93 (107)
T cd05516 20 DGRQLAEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIY-----EDS 93 (107)
T ss_pred CCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 799999999 89999999999999999999977 7789999999988888888775 899999 888
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.|+.+++
T Consensus 94 ~~l~~~f~~~~~ 105 (107)
T cd05516 94 IVLQSVFKSARQ 105 (107)
T ss_pred HHHHHHHHHHHh
Confidence 888888887665
No 198
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.29 E-value=0.058 Score=67.72 Aligned_cols=66 Identities=18% Similarity=0.090 Sum_probs=45.3
Q ss_pred CcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000169 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (1953)
Q Consensus 993 Ps~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (1953)
|..|.-...+|-|..=..-+......+.+|+|-.+.|+|||+.-+++|....-..+....-||-|-
T Consensus 9 ~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 9 LVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred eEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 444444568888866554455556788899999999999999999987655444443334455553
No 199
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.12 E-value=0.1 Score=61.33 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.+.||.-+.|+|||..+-++...+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999988777666543
No 200
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.08 E-value=0.16 Score=67.93 Aligned_cols=134 Identities=22% Similarity=0.202 Sum_probs=79.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV 1078 (1953)
..|.+-|.+++..+.. +.-.||.-..|+|||.++-+++..+.. .+...++++++|+........|..- ..
T Consensus 322 ~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e~~g----~~- 391 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGEVTG----LT- 391 (720)
T ss_pred CCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHHhcC----Cc-
Confidence 4689999999988753 446789999999999877666654433 3322578888898876665444210 00
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG 1158 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTG 1158 (1953)
.....+++. . ..+-. ...... .....++||||||+.+-. ..+...+..+....+|+|-|
T Consensus 392 ------a~Tih~lL~----~-~~~~~------~~~~~~--~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 392 ------ASTIHRLLG----Y-GPDTF------RHNHLE--DPIDCDLLIVDESSMMDT--WLALSLLAALPDHARLLLVG 450 (720)
T ss_pred ------cccHHHHhh----c-cCCcc------chhhhh--ccccCCEEEEeccccCCH--HHHHHHHHhCCCCCEEEEEC
Confidence 000001110 0 00000 000000 124678999999999843 33455556667778999999
Q ss_pred cCCCC
Q 000169 1159 TPLQN 1163 (1953)
Q Consensus 1159 TPLQN 1163 (1953)
=|-|-
T Consensus 451 D~~QL 455 (720)
T TIGR01448 451 DTDQL 455 (720)
T ss_pred ccccc
Confidence 87654
No 201
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.77 E-value=0.17 Score=66.48 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=83.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHHHHHH-HHHHCCCCeE
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVNWKSE-LHKWLPSVSC 1078 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~QW~~E-f~KwaPslkV 1078 (1953)
+-+.|+.++...+. +.-.||.-..|+|||.++..++..+.+... ....+++++|+.-...=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999976665 445789999999999998888887765322 23467888898754443333 2221111100
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--------hcccccCccEEEcccccccCCchhHHHHHhhhccc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--------s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a 1150 (1953)
....+. .+..-..|...+.... ..-....+++|||||+.-+- ...+...+..+..
T Consensus 229 -----~~~~~~----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~~ 291 (615)
T PRK10875 229 -----TDEQKK----------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALPP 291 (615)
T ss_pred -----chhhhh----------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhccc
Confidence 000000 0011112222222110 01122467999999999873 3455666677788
Q ss_pred ceeEEecccCCCC
Q 000169 1151 QRRLLLTGTPLQN 1163 (1953)
Q Consensus 1151 ~~RLLLTGTPLQN 1163 (1953)
..||+|-|-|-|-
T Consensus 292 ~~rlIlvGD~~QL 304 (615)
T PRK10875 292 HARVIFLGDRDQL 304 (615)
T ss_pred CCEEEEecchhhc
Confidence 8899999987554
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.71 Score=57.91 Aligned_cols=157 Identities=12% Similarity=0.090 Sum_probs=88.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEech--HHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHh
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPN--AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~--SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~ 1097 (1953)
..+|.-.+|+|||-++.-+..++..... ....+++|+=. ..-..|. +..|+-.+.+-+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv----------------- 236 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV----------------- 236 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce-----------------
Confidence 4578899999999988777766654321 23355555522 1222222 344432111111
Q ss_pred hccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh---HHHHHhhhcc--cceeEEecccCCCCCHHHHHHHH
Q 000169 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYR--CQRRLLLTGTPLQNDLKELWSLL 1172 (1953)
Q Consensus 1098 ~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L~--a~~RLLLTGTPLQNnL~ELwSLL 1172 (1953)
.++.++..+......+ .++++||||++.+...... .+...+.... ....|.|+||--.+.+.+++.-+
T Consensus 237 -----~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 237 -----KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred -----EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 1122333343322333 3689999999998753322 2333333332 24678899999888888888777
Q ss_pred hhhccc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000169 1173 NLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1203 (1953)
Q Consensus 1173 nFLlP~-----------iF~S~k~F~e~F~kPf~k~g~~~~~ 1203 (1953)
..+.+. .+|..-.+......|+...+.....
T Consensus 310 ~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~v 351 (388)
T PRK12723 310 SPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351 (388)
T ss_pred cCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 654332 1334445566677787766554443
No 203
>PRK04296 thymidine kinase; Provisional
Probab=94.13 E-value=0.14 Score=57.59 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (1953)
.++.-+||.|||..++.++..+.. ...+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEec
Confidence 367889999999888888776653 2346677755
No 204
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.99 E-value=0.11 Score=51.89 Aligned_cols=43 Identities=23% Similarity=0.081 Sum_probs=28.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
...+|.-++|+|||..+..++..+... ...++++.+......|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEV 45 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccC
Confidence 456889999999998887777554321 1256777766544443
No 205
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.82 E-value=0.29 Score=65.24 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=29.1
Q ss_pred cCccEEEcccccccCCch-hHHHHHhhhcccceeEEecccCC
Q 000169 1121 VDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPL 1161 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLTGTPL 1161 (1953)
-+|+++||||+|.|.+.. ..+.+.|.......+++|+.|-.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 478999999999996432 34555555656667888887743
No 206
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.81 E-value=0.31 Score=66.15 Aligned_cols=115 Identities=16% Similarity=0.075 Sum_probs=58.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCeEEEEecchhh-HhHHHHHHHhhc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIYYVGAKDQ-RSRLFSQEVAAL 1099 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-aPslkVvvy~Gs~de-Rk~l~~qei~~~ 1099 (1953)
-||.-..|+|||..+..|...|....+.....+=.|+.. ..|..- ...+.++.+.+.... ...+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC------~~~~~g~~~~~dv~eidaas~~~Vd~iR------- 106 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC------VALAPGGPGSLDVTEIDAASHGGVDDAR------- 106 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH------HHHHcCCCCCCcEEEecccccCCHHHHH-------
Confidence 389999999999999888877764322111122334432 122111 123444444432110 01110
Q ss_pred cccEEEEeHHHHHhhh-hcccccCccEEEcccccccCCch-hHHHHHhhhcccceeEEeccc
Q 000169 1100 KFNVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1100 ~fdVVITTYEsL~kd~-s~L~kikWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLTGT 1159 (1953)
.++... ..-...+|+++||||+|+|-... ..+.+.|.......+++|+.|
T Consensus 107 ----------~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 107 ----------ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred ----------HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 000000 00112478999999999995422 234555555555556666544
No 207
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.80 E-value=0.23 Score=63.49 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCCC-C--eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL-N--GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l-n--GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..|...+.++. + -|+..+.|+|||..+..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4444444444333332 2 389999999999988887776643
No 208
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=93.73 E-value=0.0064 Score=62.92 Aligned_cols=72 Identities=17% Similarity=0.052 Sum_probs=61.4
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|++..+|+||.++++|.+++- +-..|+.|+|....|-..|+.+ .||.|+ .+-
T Consensus 21 ~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~t-I~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~-----~~A 94 (106)
T cd05525 21 NGQSLAIPFINLPSKKKNPDYYERITDPVDLST-IEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIG-----RDV 94 (106)
T ss_pred CCCcccHhhccCCCcccCCchhhhCCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 689999999 99999999999999999999876 7789999999998888888776 788887 666
Q ss_pred cccchhhhc
Q 000169 1797 QVLQPKIKR 1805 (1953)
Q Consensus 1797 ~~~q~~~~~ 1805 (1953)
..|+-.++-
T Consensus 95 ~~L~~~f~~ 103 (106)
T cd05525 95 CRLRKAYYQ 103 (106)
T ss_pred HHHHHHHHH
Confidence 666655543
No 209
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.71 E-value=1.6 Score=57.38 Aligned_cols=353 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh---hhcccccCccEEEcccccccCC------
Q 000169 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD---RSKLSKVDWKYIIIDEAQRMKD------ 1136 (1953)
Q Consensus 1066 ~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd---~s~L~kikWd~VIIDEAHrLKN------ 1136 (1953)
.+|+.........+.|+|+ .......++|+..|+.+..+ ...=...+-.+|||||||++.+
T Consensus 299 iEdLv~lGk~~~~CPYY~S----------R~avp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlidti~smh 368 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYAS----------RRAVPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLIDTICSMH 368 (821)
T ss_pred HHHHHHhhhhcCCCCchhh----------hhccccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHHHHHHhh
Q ss_pred -------chhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCC--CCCCCChhh
Q 000169 1137 -------RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEG--PTHNADDDW 1207 (1953)
Q Consensus 1137 -------~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g--~~~~~e~d~ 1207 (1953)
.-+.....+..|..++..-|.+ +|+.-|--++.++ ..|...+...+...+ ..-...+-.
T Consensus 369 sa~Is~~ql~~a~~~i~~Y~~rf~~rl~~----~N~~~l~ql~~l~--------~~ll~fl~~~~~~~~~~~~~~~~dfl 436 (821)
T KOG1133|consen 369 SAEISFSQLCRAHKQIQQYFERFGKRLKA----KNLMYLKQLLSLL--------RRLLKFLDSNCELNGNGESLMRNDFL 436 (821)
T ss_pred hhheeHHHHHHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHH--------HHHHHHHHhhhhhCCcccccchhhhh
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCC------------CceEEEEEeccCHHHHHHHHHHHHccCcccCchh
Q 000169 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP------------PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrPFmLRRlKkDVekdLP------------pKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ 1275 (1953)
+...-....+..|...+.--.+-|........+- ..++..-.-++++....-...+...-+.....+.
T Consensus 437 ~~~~id~iNL~kl~~Yi~~S~i~rKv~G~~~r~~~~~s~plq~l~~~~~~~~ee~~~~ps~l~~l~~FL~~LTn~~~dGr 516 (821)
T KOG1133|consen 437 FSSGIDNINLFKLLDYIEKSKIARKVDGFGERLSEVFSQPLQSLQKKRVEAEEESQLKPSPLFELSSFLGALTNNNEDGR 516 (821)
T ss_pred hhcCccceeHHHHHHHHHHhhHHHHhcchhhcchhhccchhhHhhhccccchhcccCCCchhHHHHHHHHHHhCCCCCCc
Q ss_pred HHhhhhcC---hhhHHHHHHHHHHHHHHHHHh-----------------------------cCC--------CCCCCCCc
Q 000169 1276 EKRRVQKN---PIYQAKVYKTLNNRCMELRKT-----------------------------CNH--------PLLNYPYF 1315 (1953)
Q Consensus 1276 ek~~l~kn---~~~~ak~~~sL~nilmqLRKi-----------------------------CNH--------P~L~~p~l 1315 (1953)
..-..... ....-.....+..++.+.|-+ |+| |++.....
T Consensus 517 i~~~k~~s~~lky~lL~pA~~f~evv~earavvLAGGTMeP~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~~gp 596 (821)
T KOG1133|consen 517 IFYSKQGSGTLKYMLLNPAKHFAEVVLEARAVVLAGGTMEPVDELREQLFPGCPERISPFSCSHVIPPENILPLVVSSGP 596 (821)
T ss_pred EEEeccCCceEEEEecCcHHHHHHHHHHhheeeecCCccccHHHHHHHhcccchhhccceecccccChhheeeeeeccCC
Q ss_pred cccchhhhhhcccHHHHHHHHHHHH----HhcCCeeEEeechhHHHHHHHHHHHHcCC-------eEEeecCCCCHHHHH
Q 000169 1316 SDLSKDFLVKSCGKLWILDRILIKL----QRTGHRVLLFSTMTKLLDILEEYLQWRQL-------VYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1316 ~dls~d~Li~~SGKLelLdrIL~kL----katGhKVLIFSQft~~LDILed~L~~rGi-------kylRLDGsTs~eeRq 1384 (1953)
.....++....-+-...|.++-..+ ..-..-|++|...-..+..+..++...|+ +-+......+.++--
T Consensus 597 sg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~~dvl 676 (821)
T KOG1133|consen 597 SGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDTVEDVL 676 (821)
T ss_pred CCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcccHHHHH
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCcc--CCeEEEcCCCCC--------------------ch------------h
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDPN--------------------PK------------N 1430 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQa--ADtVIifDppWN--------------------P~------------~ 1430 (1953)
.-...=-........|-+--.-.++|||+.+ +..||....|+- |. .
T Consensus 677 ~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkA 756 (821)
T KOG1133|consen 677 EGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKA 756 (821)
T ss_pred HHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Q ss_pred HHhhhhcccc
Q 000169 1431 EEQAVARAHR 1440 (1953)
Q Consensus 1431 d~QAiGRAhR 1440 (1953)
..|.||||.|
T Consensus 757 VNQsIGRAIR 766 (821)
T KOG1133|consen 757 VNQSIGRAIR 766 (821)
T ss_pred HHHHHHHHHh
No 210
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.68 E-value=0.062 Score=68.55 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=58.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHH----HHCCCCeEEEEecchhhHhHHHHHHHhhcc
Q 000169 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELH----KWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (1953)
Q Consensus 1026 DEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~----KwaPslkVvvy~Gs~deRk~l~~qei~~~~ 1100 (1953)
+.||+|||+++.+||++++. ..+..+|+.|- ++++..-...|. .-+---.++.|.+..-..+.+-.-..-...
T Consensus 4 matgsgkt~~ma~lil~~y~--kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 4 MATGSGKTLVMAGLILECYK--KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccCCChhhHHHHHHHHHHH--hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 56999999999999999875 45667888774 556554333221 111000111222221111111000012345
Q ss_pred ccEEEEeHHHHHhhhh----------cccccCccEEEcccccccC
Q 000169 1101 FNVLVTTYEFIMYDRS----------KLSKVDWKYIIIDEAQRMK 1135 (1953)
Q Consensus 1101 fdVVITTYEsL~kd~s----------~L~kikWd~VIIDEAHrLK 1135 (1953)
..|++||.+.+..+.. .|.. .--+++-||||++.
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~-~klvfl~deahhln 125 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKD-QKLVFLADEAHHLN 125 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhh-CceEEEechhhhhh
Confidence 6799999988866521 1222 12356789999993
No 211
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=93.59 E-value=0.0066 Score=62.49 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=65.2
Q ss_pred CCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcc
Q 000169 1727 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (1953)
Q Consensus 1727 ~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~ 1795 (1953)
.+++.++.+| .+|++..+|+|+.+++.|++++- +-..|+.|+|....+-..|+.+ +||+|+ .+
T Consensus 18 ~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~ 91 (103)
T cd05518 18 GSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKT-IEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVY-----ED 91 (103)
T ss_pred cCCCcccHHHhcCCCcccCccHHHHcCCCcCHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 4788999999 99999999999999999999876 7789999999988888888775 799999 77
Q ss_pred ccccchhhhccc
Q 000169 1796 EQVLQPKIKRKR 1807 (1953)
Q Consensus 1796 ~~~~q~~~~~kr 1807 (1953)
-.+|+-.++.||
T Consensus 92 A~~le~~~~~~~ 103 (103)
T cd05518 92 ANILEKVLKEKR 103 (103)
T ss_pred HHHHHHHHHhcC
Confidence 778887777765
No 212
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.58 E-value=0.3 Score=66.17 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=27.5
Q ss_pred cCccEEEcccccccCC-chhHHHHHhhhcccceeEEecccC
Q 000169 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+|.++||||+|+|.. ....+.+.|.......+++|..|-
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 4789999999999943 223455555555666777777553
No 213
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=93.57 E-value=0.0069 Score=62.30 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=62.5
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|++..+|+|+.++++|++++. +-..|+.|+|....|-..|+.+ .||+++ .+-
T Consensus 19 ~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~-----~~A 92 (103)
T cd05520 19 QGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQ-IRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIY-----KDA 92 (103)
T ss_pred CCCCccHhhhcCCCcccCCCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 589999999 99999999999999999999977 7789999999988888877765 788888 666
Q ss_pred cccchhhhcc
Q 000169 1797 QVLQPKIKRK 1806 (1953)
Q Consensus 1797 ~~~q~~~~~k 1806 (1953)
..|+-.|+.|
T Consensus 93 ~~L~~~f~~~ 102 (103)
T cd05520 93 EKLQKLMQAK 102 (103)
T ss_pred HHHHHHHHHh
Confidence 6777666655
No 214
>PLN03025 replication factor C subunit; Provisional
Probab=93.41 E-value=0.57 Score=56.74 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=31.7
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCCCCCHHHHHH
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwS 1170 (1953)
..|++|||||+|.|-.. ...+.+.+..+....+++|+.+....-+..|-+
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 36899999999999532 233444555555566788887765443344433
No 215
>CHL00181 cbbX CbbX; Provisional
Probab=93.25 E-value=0.23 Score=59.64 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLV 1063 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~ 1063 (1953)
+.+.+|.-+.|+|||..|-++...+..... ..++++.|....++.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~ 104 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG 104 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence 445689999999999999887766553211 123444444344443
No 216
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=93.16 E-value=0.0083 Score=61.79 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=63.4
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|++..+|+|+.++++|.+++. +-..|+.|+|....+-..|+.+ .||+|+ .+-
T Consensus 19 ~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~-----~~A 92 (105)
T cd05515 19 RGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEK-IRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIY-----KDA 92 (105)
T ss_pred CCCcccHHhccCCCcccCCcHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 689999999 89999999999999999999877 7789999999888877777765 788888 777
Q ss_pred cccchhhhccc
Q 000169 1797 QVLQPKIKRKR 1807 (1953)
Q Consensus 1797 ~~~q~~~~~kr 1807 (1953)
..|+-.+.+++
T Consensus 93 ~~L~~~~~~~~ 103 (105)
T cd05515 93 LTLQKVLLETK 103 (105)
T ss_pred HHHHHHHHHHH
Confidence 78887666654
No 217
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.03 E-value=0.22 Score=59.61 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=26.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEec
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVP 1058 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP 1058 (1953)
+.+.+|..+.|+|||..|.++...+...... .++++.|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 4467889999999999987777666542111 235444443
No 218
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.87 E-value=0.44 Score=62.87 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle 1045 (1953)
||..+.|+|||..+..+...|..
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 88999999999999888877753
No 219
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=92.83 E-value=0.24 Score=67.67 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=77.6
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-----HHHHHHHHHHCCCCeEEEEecchhhHh
Q 000169 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-----VNWKSELHKWLPSVSCIYYVGAKDQRS 1089 (1953)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-----~QW~~Ef~KwaPslkVvvy~Gs~deRk 1089 (1953)
+|+.+.+.+++...|+|||+.+=..+.. ....+.+.-|+|...+ ..|...|.+. .++.++-..|......
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 5667778999999999999877433322 4456788999998754 3488888776 5666666666554332
Q ss_pred HHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCch
Q 000169 1090 RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138 (1953)
Q Consensus 1090 ~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~ 1138 (1953)
+ ....-+|+|+|++.+-... .--..++.|+||.|.+....
T Consensus 1230 k------l~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1230 K------LLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred H------HhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccC
Confidence 2 2346799999999875442 22256899999999987543
No 220
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.82 E-value=0.26 Score=60.65 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH---------------HHHH
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV---------------NWKS 1067 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~---------------QW~~ 1067 (1953)
-||.-++.-|+. ..-.=..|.-.-|+|||+-|+|.-.+--..++.+.+++|-=|.--+. -|..
T Consensus 231 ~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq 308 (436)
T COG1875 231 AEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQ 308 (436)
T ss_pred HHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHH
Confidence 378888877664 11112357778999999999887666544466666655554543222 2333
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~ 1147 (1953)
-|.. ++.++.-..... ..............|--.||= +-+ .+.-.+||||||+++-- ..+-..+.+
T Consensus 309 ~i~D---nLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~I---RGR----Sl~~~FiIIDEaQNLTp--heikTiltR 374 (436)
T COG1875 309 AIFD---NLEVLFSPNEPG--DRALEEILSRGRIEVEALTYI---RGR----SLPDSFIIIDEAQNLTP--HELKTILTR 374 (436)
T ss_pred HHHh---HHHHHhcccccc--hHHHHHHHhccceeeeeeeee---ccc----ccccceEEEehhhccCH--HHHHHHHHh
Confidence 2211 111111000000 111111122223333333331 111 23456899999999843 233334555
Q ss_pred cccceeEEecccCCCCC
Q 000169 1148 YRCQRRLLLTGTPLQND 1164 (1953)
Q Consensus 1148 L~a~~RLLLTGTPLQNn 1164 (1953)
.-...++.|||-|.|-+
T Consensus 375 ~G~GsKIVl~gd~aQiD 391 (436)
T COG1875 375 AGEGSKIVLTGDPAQID 391 (436)
T ss_pred ccCCCEEEEcCCHHHcC
Confidence 56667999999886543
No 221
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.53 E-value=0.38 Score=57.66 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1007 VGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1007 eGL~WLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..+.++......+. +.+|.-+.|+|||..+.++..++.
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34455555444444 578999999999999988887765
No 222
>PRK06526 transposase; Provisional
Probab=92.07 E-value=0.35 Score=57.28 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
....|+. .+.|.+|..+.|+|||..+.++...+.. .+ .+++++. ...|..++.
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~-~g--~~v~f~t----~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQ-AG--HRVLFAT----AAQWVARLA 142 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHH-CC--Cchhhhh----HHHHHHHHH
Confidence 3445664 3677899999999999999998877764 22 2444433 234555554
No 223
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.74 E-value=1.1 Score=50.72 Aligned_cols=43 Identities=30% Similarity=0.197 Sum_probs=28.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
..+.+|.-+.|+|||..+.++..++.. . +..++.+....+..|
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~-~---~~~~~~i~~~~~~~~ 80 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEE-R---GKSAIYLPLAELAQA 80 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-c---CCcEEEEeHHHHHHh
Confidence 445689999999999999887766553 1 223455555555444
No 224
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=91.50 E-value=0.93 Score=61.16 Aligned_cols=147 Identities=21% Similarity=0.169 Sum_probs=84.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.|-.-|+.++...+......+ |+.. .|+|||-+...+|..|.. ..+.+|+.+=++ .+.|-.-.+..+-- .
T Consensus 669 ~LN~dQr~A~~k~L~aedy~L--I~GM-PGTGKTTtI~~LIkiL~~---~gkkVLLtsyThsAVDNILiKL~~~~i--~- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYAL--ILGM-PGTGKTTTISLLIKILVA---LGKKVLLTSYTHSAVDNILIKLKGFGI--Y- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhccchhe--eecC-CCCCchhhHHHHHHHHHH---cCCeEEEEehhhHHHHHHHHHHhccCc--c-
Confidence 466789999877765443332 5555 799999888888877765 234788888654 67887666665421 1
Q ss_pred EEEecchhhHhHHHHH---------------HHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHH
Q 000169 1079 IYYVGAKDQRSRLFSQ---------------EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~q---------------ei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsr 1143 (1953)
++--|....-...... ........||.||---+- ...|....|||+|||||--+--+-
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP~----- 812 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLPL----- 812 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccch-----
Confidence 1112322111111100 011234455555532221 345667789999999998764322
Q ss_pred HhhhcccceeEEecccCCC
Q 000169 1144 DLDRYRCQRRLLLTGTPLQ 1162 (1953)
Q Consensus 1144 aLk~L~a~~RLLLTGTPLQ 1162 (1953)
.|--+....+..|-|-+.|
T Consensus 813 ~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhhhhhcceEEEeccccc
Confidence 2233344556777776644
No 225
>PRK08181 transposase; Validated
Probab=91.47 E-value=1.2 Score=53.33 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
+-.-|...+.++..+...+.|.+|..++|+|||..+.++...+..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 445666666555444456778899999999999999888877764
No 226
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.45 E-value=0.55 Score=58.09 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|..++..+...+..+. .-||..+.|+|||..+..++..++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5566777777776554 3578999999999999888887764
No 227
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.29 E-value=1.3 Score=58.76 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=26.6
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+|+++||||+|+|... ...+.+.|.......+++|+.|-
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 47899999999999532 23445555555555677777553
No 228
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.07 E-value=2.2 Score=57.04 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=28.4
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCCCCCHHHH
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPLQNnL~EL 1168 (1953)
++++|||||+|.|... ...+.+.|.......+++|+.|=...-+.-+
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV 166 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHH
Confidence 6889999999998531 1234444444445557777766444433333
No 229
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=91.06 E-value=0.021 Score=58.82 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
++|.++.+| .+|++..+|+|++++++|++++. +-..|+.|+|-...|-..|+.. .||+|+ .+-
T Consensus 19 ~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~-----~~A 92 (103)
T cd05517 19 SGRLISELFQKLPSKVLYPDYYAVIKEPIDLKT-IAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVY-----KDA 92 (103)
T ss_pred CCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHH-HHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 899999999 99999999999999999999876 7788999999877777777664 788887 554
Q ss_pred cccch
Q 000169 1797 QVLQP 1801 (1953)
Q Consensus 1797 ~~~q~ 1801 (1953)
..|+=
T Consensus 93 ~~l~~ 97 (103)
T cd05517 93 NAIKK 97 (103)
T ss_pred HHHHH
Confidence 44443
No 230
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.82 E-value=1.7 Score=47.93 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCCCeEEE
Q 000169 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPSVSCIY 1080 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K-waPslkVvv 1080 (1953)
|.+.+..+..++.++. + -|+..+.|+||+-.+..++..++....... .|-.. .....+.. -.|++.++
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~c---~~c~~~~~~~~~d~~~~- 73 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGEC---RSCRRIEEGNHPDFIII- 73 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SSS---HHHHHHHTT-CTTEEEE-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC---HHHHHHHhccCcceEEE-
Confidence 5566666666665542 3 388899999999999999988875433322 11111 11222222 12333333
Q ss_pred EecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc--c--ccCccEEEcccccccCC-chhHHHHHhhhcccceeEE
Q 000169 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL--S--KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1155 (1953)
Q Consensus 1081 y~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L--~--kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLL 1155 (1953)
......+ .+ ..+.++.-...+ . ...|+++||||||+|.. ....+.+.|.......+++
T Consensus 74 -~~~~~~~-------------~i---~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 74 -KPDKKKK-------------SI---KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp -ETTTSSS-------------SB---SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred -ecccccc-------------hh---hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2111100 00 011111111111 1 13689999999999953 3446777777777777888
Q ss_pred ecccCCCC
Q 000169 1156 LTGTPLQN 1163 (1953)
Q Consensus 1156 LTGTPLQN 1163 (1953)
|+.+=...
T Consensus 137 L~t~~~~~ 144 (162)
T PF13177_consen 137 LITNNPSK 144 (162)
T ss_dssp EEES-GGG
T ss_pred EEECChHH
Confidence 87764333
No 231
>PF13892 DBINO: DNA-binding domain
Probab=90.70 E-value=5.1 Score=43.98 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcchHHHHHHHHHhHhhhHHHHHHhhhhh
Q 000169 839 NRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKI 916 (1953)
Q Consensus 839 ~r~v~~~h~~~~~e~~kr~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~LL~qte~~l~~l~~~v 916 (1953)
.|.+..|-.+.++++.....+..++.++..+.+++.. + . +.+..+|.+||+|||.|.|+++.++
T Consensus 70 ~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~--e----~--------~rq~~rl~fLl~QTElfsHF~~~k~ 133 (139)
T PF13892_consen 70 MREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKR--E----A--------KRQQRRLNFLLTQTELFSHFMQNKA 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH--H----H--------HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3556666666666654444444455666555544321 1 1 1222358899999999999998654
No 232
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.60 E-value=3.2 Score=52.81 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=79.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-h-HHHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-N-AVLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEV 1096 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~-SLL~QW~~Ef~KwaP--slkVvvy~Gs~deRk~l~~qei 1096 (1953)
..+|+-.+|+|||-+++.++.++....+. .++++|.- . .... ...+..|+- ++.+.+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~~V~li~~D~~r~~a--~eqL~~~a~~~~vp~~~---------------- 283 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGK-KKVALITLDTYRIGA--VEQLKTYAKIMGIPVEV---------------- 283 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEECCccHHHH--HHHHHHHHHHhCCceEc----------------
Confidence 44678899999999998887776511222 34555542 2 1100 122333321 111111
Q ss_pred hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh---HHHHHhhh--cccceeEEecccCCCCCHHHHHHH
Q 000169 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDR--YRCQRRLLLTGTPLQNDLKELWSL 1171 (1953)
Q Consensus 1097 ~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~--L~a~~RLLLTGTPLQNnL~ELwSL 1171 (1953)
+.+...+......+. .+++||||-+-+...... .+...+.. ......|+|++|+-.+.+.+++..
T Consensus 284 --------~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 284 --------VYDPKELAKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred --------cCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 112222222222222 589999999876533222 22222221 233557899999988888998888
Q ss_pred Hhhhccc-c----------cCChHHHHhhhcCCcccCCCCC
Q 000169 1172 LNLLLPE-V----------FDNRKAFHDWFSQPFQKEGPTH 1201 (1953)
Q Consensus 1172 LnFLlP~-i----------F~S~k~F~e~F~kPf~k~g~~~ 1201 (1953)
+..+.+. + ++..-.+......|+...+...
T Consensus 354 f~~~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 354 FSRLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred hCCCCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCCC
Confidence 8876552 1 2333334444556666554433
No 233
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.29 E-value=0.39 Score=62.73 Aligned_cols=164 Identities=15% Similarity=0.219 Sum_probs=101.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH-HHHH---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE-LHKW---LP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~E-f~Kw---aP 1074 (1953)
...|||.+.++-|..-. -....+.-..-+|||...+.+|.|.+. ...+|+|+|.|+. +...|..+ |... .|
T Consensus 16 ~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSID--QDPGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEE--eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 68899999988776422 234567778899999998888888875 4457999999986 66677644 3332 34
Q ss_pred CCeEEEEe-cchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccC----CchhHHHH---Hhh
Q 000169 1075 SVSCIYYV-GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK----DRESVLAR---DLD 1146 (1953)
Q Consensus 1075 slkVvvy~-Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLK----N~~SKlsr---aLk 1146 (1953)
.++-.+.. ...+....+....+ ..-.+.++... -...|.....++||+||...+- +....+.. -..
T Consensus 92 ~l~~~~~~~~~~~~~~t~~~k~f--~gg~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~ 165 (557)
T PF05876_consen 92 VLRRKLSPSKSRDSGNTILYKRF--PGGFLYLVGAN----SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTK 165 (557)
T ss_pred HHHHHhCchhhcccCCchhheec--CCCEEEEEeCC----CCcccccCCcCEEEEechhhccccCccCCCHHHHHHHHHh
Confidence 44422222 11111111111111 12234444432 2356777889999999999983 22333333 333
Q ss_pred hcccceeEEecccCCCCCHHHHHHHHh
Q 000169 1147 RYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (1953)
Q Consensus 1147 ~L~a~~RLLLTGTPLQNnL~ELwSLLn 1173 (1953)
.|....++++..||.......++.++.
T Consensus 166 tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 166 TFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred hhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 455678999999998776556665544
No 234
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.29 E-value=1.3 Score=57.06 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=19.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Ll 1044 (1953)
-||..+.|+|||..+-+++..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999988877766654
No 235
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.20 E-value=1.6 Score=47.48 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhhcCCCCccEEEEeccccccccCCcc--CCeEEEcCCCC
Q 000169 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDP 1426 (1953)
Q Consensus 1379 s~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQa--ADtVIifDppW 1426 (1953)
...+...+++.|.....+ .+|+++....+|||++. +..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344578899999863221 47788877999999996 78899988775
No 236
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.18 E-value=1.7 Score=57.63 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=25.8
Q ss_pred cCccEEEcccccccCC-chhHHHHHhhhcccceeEEecccC
Q 000169 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+|+++||||+|+|-. ....+.+.|.......+++|+.|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 3689999999999843 222344555554455577777653
No 237
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=89.97 E-value=3.1 Score=56.73 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=35.6
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHh-hc-CCC-CeE-EEcCCCchHHHHHHHHHHHHHH
Q 000169 991 RQPSMLRAGTLRDYQIVGLQWMLSL-YN-NKL-NGI-LADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 991 eqPs~L~ggkLRPYQleGL~WLlsL-~~-n~l-nGI-LADEMGLGKTIQAIALIa~Lle 1045 (1953)
-.|..|. =|+-|+.-|...+.- .. .+. ++| |.-.+|+|||.++-.++..|.+
T Consensus 752 YVPD~LP---hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 752 VVPKYLP---CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCCcCC---ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4565553 478888887655543 32 222 333 8999999999999888877654
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=89.90 E-value=1.9 Score=51.15 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
.-.+...+.-++..++.+.|.+|.-..|+|||..++|+...+. .++ .+++++.=+.++.++...+.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHh
Confidence 3344555555555566788889999999999999999998888 332 35666665556666555443
No 239
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=89.68 E-value=0.032 Score=57.23 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=48.8
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+++.++.+| .+|+...+|+|+++++.|.+++. +-..|+.|+|....|-..|+.+
T Consensus 19 ~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~-I~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05519 19 TGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQ-IKRRIEGRAYKSLEEFLEDFHL 73 (103)
T ss_pred CCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 688999999 89999999999999999999987 7789999999988887777765
No 240
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.34 E-value=1.9 Score=56.85 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCCCeEEE
Q 000169 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPSVSCIY 1080 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K-waPslkVvv 1080 (1953)
|...+..|...+..+ .+. |+..+.|+|||-.+..++..+....+..+-..-.|+. +.+|.. ......++.
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~------C~~i~~~~~~~~dvie 91 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES------CVALAPNGPGSIDVVE 91 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH------HHHhhcccCCCceEEE
Confidence 455555555544433 233 7999999999999988887665322221111223332 222321 112345555
Q ss_pred Eecchhh-HhHHHHHHHhhccccEEEEeHHHHHhhhhcc-cccCccEEEcccccccCCch-hHHHHHhhhcccceeEEec
Q 000169 1081 YVGAKDQ-RSRLFSQEVAALKFNVLVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLT 1157 (1953)
Q Consensus 1081 y~Gs~de-Rk~l~~qei~~~~fdVVITTYEsL~kd~s~L-~kikWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLT 1157 (1953)
+.+.... ...+. .++...... ...+++++||||+|.|.... ..+.+.|.......+++|.
T Consensus 92 idaas~~gvd~iR-----------------el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~ 154 (584)
T PRK14952 92 LDAASHGGVDDTR-----------------ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFA 154 (584)
T ss_pred eccccccCHHHHH-----------------HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 5442211 11110 011111111 12368899999999996432 2334444444455555554
Q ss_pred cc
Q 000169 1158 GT 1159 (1953)
Q Consensus 1158 GT 1159 (1953)
.|
T Consensus 155 tt 156 (584)
T PRK14952 155 TT 156 (584)
T ss_pred eC
Confidence 44
No 241
>PHA02533 17 large terminase protein; Provisional
Probab=89.28 E-value=3 Score=54.53 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHH---HHCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELH---KWLP 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~---KwaP 1074 (1953)
..|.|+|...+.+|.. .+. .++.-.=..|||..+.++++++.-..+ ...+++++|..-... -.+.+. ...|
T Consensus 58 f~L~p~Q~~i~~~~~~---~R~-~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---NRF-NACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc---CeE-EEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 4799999998887632 222 255556789999998876665543332 347788888432111 112222 2223
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhh-hccc--c
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRC--Q 1151 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk-~L~a--~ 1151 (1953)
.+........ .+..+ .. .....|.+.|- +.........+++||||+|.+++.. .++.++. .+.. .
T Consensus 133 ~l~~~~i~~~--~~~~I---~l-~NGS~I~~lss-----~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~ 200 (534)
T PHA02533 133 DFLQPGIVEW--NKGSI---EL-ENGSKIGAYAS-----SPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRS 200 (534)
T ss_pred HHhhcceeec--CccEE---Ee-CCCCEEEEEeC-----CCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCC
Confidence 2210000000 00000 00 11222222221 1233455678899999999998743 3333332 2222 2
Q ss_pred eeEEecccCC
Q 000169 1152 RRLLLTGTPL 1161 (1953)
Q Consensus 1152 ~RLLLTGTPL 1161 (1953)
.++++..||-
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 4688888883
No 242
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=89.13 E-value=1.3 Score=48.19 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCccEEEEeccc--cccccCCcc--CCeEEEcCCCC
Q 000169 1382 DRESAIVDFNSHDSDCFIFLLSIRA--AGRGLNLQS--ADTVIIYDPDP 1426 (1953)
Q Consensus 1382 eRqeaIerFNs~ds~ifVfLLSTrA--GGeGLNLQa--ADtVIifDppW 1426 (1953)
+...++++|+........+|+++.. ..+|||++. +..||+.-.|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4478899998632211235666655 899999997 78999988885
No 243
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.03 E-value=2.8 Score=50.31 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=26.3
Q ss_pred CccEEEcccccccCCch--hHHHHHhhhcccceeEEecccCC
Q 000169 1122 DWKYIIIDEAQRMKDRE--SVLARDLDRYRCQRRLLLTGTPL 1161 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~--SKlsraLk~L~a~~RLLLTGTPL 1161 (1953)
..++|||||+|++.... ..+...+..+....++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 46799999999983222 23333455556667888888643
No 244
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=88.81 E-value=4.1 Score=52.06 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=88.0
Q ss_pred ccHHHHHH-HHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe
Q 000169 1327 CGKLWILD-RILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (1953)
Q Consensus 1327 SGKLelLd-rIL~kLk--atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS 1403 (1953)
..++.... .+|+.+. ....++|||...---.-.|..+|+..++.|+.++--++..+-.++-..|..+ ...++|.+
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G--~~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG--RKPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC--CceEEEEE
Confidence 34555544 4788776 3446899998766666668899999999999999999999999999999865 45577777
Q ss_pred ccccc-cccCCccCCeEEEcCCCCCchhHHhhhhcccccCC
Q 000169 1404 IRAAG-RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1443 (1953)
Q Consensus 1404 TrAGG-eGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQ 1443 (1953)
-|+-= .=..+.++.+||+|.+|-+|.-|.-.+.-...-.+
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~ 398 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSG 398 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccccc
Confidence 65532 23456779999999999999999988866554443
No 245
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.73 E-value=3.3 Score=49.07 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=30.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
+.+|....|+|||..+.+++.++.. . ...++++. +..|...+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~-~--g~~v~~it----~~~l~~~l~ 143 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL-R--GKSVLIIT----VADIMSAMK 143 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-c--CCeEEEEE----HHHHHHHHH
Confidence 4589999999999999999988875 2 23455553 344555554
No 246
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.60 E-value=2.4 Score=51.84 Aligned_cols=51 Identities=27% Similarity=0.236 Sum_probs=34.2
Q ss_pred CCcccCCCCCcHHHHHHHHHHHHh-hcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 992 QPSMLRAGTLRDYQIVGLQWMLSL-YNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 992 qPs~L~ggkLRPYQleGL~WLlsL-~~n--~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.|..+. =|+.|++.|...+.- ... ..+.+|.-+.|+|||..+-.++..+.+
T Consensus 13 ~p~~l~---gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 13 VPDRIV---HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCCCCC---CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344443 377888776555443 222 245688999999999988888777654
No 247
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.38 E-value=0.84 Score=56.79 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHHHhCCC-------CCeEEEechHHHHHHHHHHHHHCC
Q 000169 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLMEFKGNY-------GPHLIIVPNAVLVNWKSELHKWLP 1074 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle~kg~~-------GP~LIVVP~SLL~QW~~Ef~KwaP 1074 (1953)
|..+...+...+..+. .-|+.-+.|+|||..+.++..+++-..... ...|.+|+..-...|.. ..-.|
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~--~~~HP 101 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA--AGAHG 101 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH--ccCCC
Confidence 5566666666555432 247899999999999999999988533211 12344555432223321 11136
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc----cccCccEEEcccccccCC-chhHHHHHhhhcc
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYR 1149 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L----~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~ 1149 (1953)
++.++.-...... .+. .-.| +.+.++.-...+ ..-.|.+|||||+|+|-. ....+.+.+....
T Consensus 102 Dl~~i~~~~~~~~-~~~--------~~~I---~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 102 GLLTLERSWNEKG-KRL--------RTVI---TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred CeEEEeccccccc-ccc--------cccc---cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 6655532110000 000 0001 223332221111 223789999999999842 2224555555544
Q ss_pred cceeE-EecccC
Q 000169 1150 CQRRL-LLTGTP 1160 (1953)
Q Consensus 1150 a~~RL-LLTGTP 1160 (1953)
....+ ++|-.|
T Consensus 170 ~~~~~IL~t~~~ 181 (365)
T PRK07471 170 ARSLFLLVSHAP 181 (365)
T ss_pred CCeEEEEEECCc
Confidence 44444 444444
No 248
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=88.24 E-value=0.037 Score=57.85 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=65.2
Q ss_pred CCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcc
Q 000169 1727 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (1953)
Q Consensus 1727 ~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~ 1795 (1953)
.++|.+|.+| .+|+++ +.++.++++|.++++ +-..|+.|+|.-..|...|+-. +||-|. +|
T Consensus 21 ~~Gr~~s~~f~~LP~~~--~~~~~~ik~Pi~l~~-Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy-----~d 92 (110)
T cd05526 21 EEGRCYSDSLAELPELA--VDGVGPKKIPLTLDI-IKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIY-----ED 92 (110)
T ss_pred CCCCCchHHHHHCCCcc--cCchhhhcCCccHHH-HHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHH-----HH
Confidence 3899999999 899844 566789999999987 7789999999999888877654 889888 99
Q ss_pred ccccchhhhcccccc
Q 000169 1796 EQVLQPKIKRKRSIR 1810 (1953)
Q Consensus 1796 ~~~~q~~~~~krs~~ 1810 (1953)
..+||-.++++|...
T Consensus 93 A~eLq~~f~~~rd~~ 107 (110)
T cd05526 93 AVELQQFFIKIRDEL 107 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988643
No 249
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=88.02 E-value=0.044 Score=57.39 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=60.6
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|++..+|+|+.++++|++++. +-.+|+.|+|....|-..|+.. .||.+| .+-
T Consensus 21 ~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~-----~~A 94 (113)
T cd05524 21 DGRILCESFIRVPKRRNEPEYYEVVSNPIDLLK-IQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEH-----KDA 94 (113)
T ss_pred CCCchhHHHhcCCCcccCCCHHHHhCCccCHHH-HHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 889999999 99999999999999999999876 7789999999988887777665 677777 566
Q ss_pred cccchhhhccc
Q 000169 1797 QVLQPKIKRKR 1807 (1953)
Q Consensus 1797 ~~~q~~~~~kr 1807 (1953)
..|+-.|...+
T Consensus 95 ~~L~~~f~~~~ 105 (113)
T cd05524 95 CKLWELFLSAR 105 (113)
T ss_pred HHHHHHHHHHH
Confidence 66665555433
No 250
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=88.01 E-value=1.6 Score=53.68 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.++|+|......++.. ..-.+ -|+..+.|+|||..+..+...++-
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 3688999888888765 22223 368899999999999999888774
No 251
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=88.00 E-value=1.4 Score=51.39 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHH
Q 000169 1003 DYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~l-nGILADEMGLGKTIQAIALIa 1041 (1953)
+.+..++..+......+. ..+|.-+.|+|||..+-.++.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344556666655444433 367899999999977765543
No 252
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.88 E-value=2.6 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.053 Sum_probs=19.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
.+.+|.-+.|+|||-.+.++..++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999987777666554
No 253
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.80 E-value=3.2 Score=53.95 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+..+. +. |+.-+.|+|||..+.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4444555544444332 23 89999999999999888777654
No 254
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.78 E-value=9.3 Score=48.60 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=83.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec--h--HHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP--N--AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP--~--SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei 1096 (1953)
..+|+-.+|+|||..+..+...+.. . ...+++|.- - ..+.||..-... .
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~-~--GkkVglI~aDt~RiaAvEQLk~yae~----l-------------------- 295 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHG-K--KKTVGFITTDHSRIGTVQQLQDYVKT----I-------------------- 295 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-c--CCcEEEEecCCcchHHHHHHHHHhhh----c--------------------
Confidence 3468889999999988887776653 2 234555553 1 245566532211 1
Q ss_pred hhccccEE-EEeHHHHHhhhhcccc-cCccEEEcccccccCCchhH---HHHHhhhcccc-eeEEecccCCCCCHHHHHH
Q 000169 1097 AALKFNVL-VTTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRESV---LARDLDRYRCQ-RRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1097 ~~~~fdVV-ITTYEsL~kd~s~L~k-ikWd~VIIDEAHrLKN~~SK---lsraLk~L~a~-~RLLLTGTPLQNnL~ELwS 1170 (1953)
++.++ +.+...+......+.. .++++||||-+=+.-+.... +.+.+...... ..|.|++|--.+.+.++..
T Consensus 296 ---gipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 296 ---GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ---CCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 12222 2233334333333332 36899999988765433222 22222222222 3456788876677777776
Q ss_pred HHhhhccc-----------ccCChHHHHhhhcCCcccCCCCCCCC
Q 000169 1171 LLNLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNAD 1204 (1953)
Q Consensus 1171 LLnFLlP~-----------iF~S~k~F~e~F~kPf~k~g~~~~~e 1204 (1953)
.|+.+... .+|..-.+...+..|+...+...+..
T Consensus 373 ~F~~~~idglI~TKLDET~k~G~iLni~~~~~lPIsyit~GQ~VP 417 (436)
T PRK11889 373 NFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 417 (436)
T ss_pred HhcCCCCCEEEEEcccCCCCccHHHHHHHHHCcCEEEEeCCCCCC
Confidence 66654332 13444455666777877665544433
No 255
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.50 E-value=2.9 Score=54.57 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=26.1
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEeccc
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGT 1159 (1953)
.|.++||||+|+|... ...+.+.|.......+++|++|
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 6899999999999532 2345555555555567777765
No 256
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.26 E-value=3.4 Score=54.92 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..|...+..+. .-||..+.|+|||..+.+++..+..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4444555555444443 3489999999999999888887764
No 257
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.25 E-value=1.6 Score=49.78 Aligned_cols=130 Identities=22% Similarity=0.272 Sum_probs=66.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecch--hhHhHHHHHHHhhcc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALK 1100 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~--deRk~l~~qei~~~~ 1100 (1953)
+|+-.+|.|||-++.-+.+++... ..++.+|+--.--.--.+.++.|+--+.+-++.-.. +..
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~------------ 69 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA------------ 69 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH------------
Confidence 678899999999998888887753 345555553211111122333333222222222110 010
Q ss_pred ccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh---HHHHHhhhc-ccceeEEecccCCCCCHHHHHHHHhhh
Q 000169 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLL 1175 (1953)
Q Consensus 1101 fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L-~a~~RLLLTGTPLQNnL~ELwSLLnFL 1175 (1953)
+.+......+...++++|+||-+-+..+... .+...+... .....|.|++|--+..+..+......+
T Consensus 70 --------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 70 --------EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp --------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 1111122334445689999999877644322 222222222 344678888887666666555555544
No 258
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.11 E-value=2.5 Score=52.43 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|...+..+...+..+ .+. ||.-+.|+|||..+-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 455555555544433 234 7999999999988888776664
No 259
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.01 E-value=3.9 Score=50.50 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHhhc----CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYN----NKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~----n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
..+.+...++.++..... .+.+.+|..++|+|||..+.+++..++.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 466666677765553322 4566789999999999999998888875
No 260
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=86.94 E-value=4 Score=55.38 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=71.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV 1078 (1953)
..|-+-|..++..++. .+.-.+|....|+|||.+.-+++..+ ... ...+++++|+.....-..+- + ++..
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~-~~~--g~~V~~~ApTg~Aa~~L~~~---~-g~~a 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAW-EAA--GYRVIGAALSGKAAEGLQAE---S-GIES 420 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHH-HhC--CCeEEEEeCcHHHHHHHHhc---c-CCce
Confidence 4689999999987764 12346888999999998776655443 322 34688888987544322211 0 0000
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHh--hhhcccccCccEEEcccccccCCchhHHHHHhhh-cccceeEE
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLL 1155 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~k--d~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~-L~a~~RLL 1155 (1953)
.|...+.. ..........++|||||+..+-. ..+...+.. .....+|+
T Consensus 421 ---------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~--~~~~~Ll~~~~~~~~kli 471 (744)
T TIGR02768 421 ---------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS--RQMARVLKEAEEAGAKVV 471 (744)
T ss_pred ---------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEEE
Confidence 01111100 00011123679999999998853 223334432 24567899
Q ss_pred ecccCCC
Q 000169 1156 LTGTPLQ 1162 (1953)
Q Consensus 1156 LTGTPLQ 1162 (1953)
|.|=|-|
T Consensus 472 LVGD~~Q 478 (744)
T TIGR02768 472 LVGDPEQ 478 (744)
T ss_pred EECChHH
Confidence 9996543
No 261
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=86.92 E-value=2.7 Score=51.68 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=80.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPsl 1076 (1953)
.++|+|......+...+..+. + -|+..+.|+||+..+.+++..++-....... .|+.. +|.. ..-.|++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~c---~~~~--~g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRTR---QLIA--AGTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchHH---HHHh--cCCCCCE
Confidence 589999999998888765443 2 4788999999999999998888753211111 12211 1111 1112555
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhccc----ccCccEEEcccccccCC-chhHHHHHhhhcccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~----kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~ 1151 (1953)
.++...-.....+ .. .-...+.++.-...+. .-.++++|||+|++|.. ....+.+.|..-...
T Consensus 76 ~~i~~~p~~~~~k-----------~~-~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~ 143 (319)
T PRK08769 76 QLVSFIPNRTGDK-----------LR-TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPG 143 (319)
T ss_pred EEEecCCCccccc-----------cc-ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCC
Confidence 5442110000000 00 0011222221111111 12689999999999953 333566666666666
Q ss_pred eeEEecccCCCCCHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwS 1170 (1953)
..++|++.-...-+.-|.|
T Consensus 144 ~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 144 RYLWLISAQPARLPATIRS 162 (319)
T ss_pred CeEEEEECChhhCchHHHh
Confidence 6677776543333333333
No 262
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.91 E-value=3.3 Score=54.91 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-|+..+.|+|||..+..+...+..
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccc
Confidence 468999999999999888877653
No 263
>PF13173 AAA_14: AAA domain
Probab=86.80 E-value=2.8 Score=44.14 Aligned_cols=38 Identities=37% Similarity=0.459 Sum_probs=25.8
Q ss_pred CccEEEcccccccCCchhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.-.+|||||+|++.+....+-..+... ....+++||.-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccc
Confidence 567899999999976433333333322 45689999975
No 264
>PF13245 AAA_19: Part of AAA domain
Probab=86.75 E-value=2 Score=42.17 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=33.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SLL~Q 1064 (1953)
.++--..|+|||-+++..+.+++.. .....++|||+|+....+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 4568899999999999999998853 222568999999875444
No 265
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.68 E-value=3.1 Score=54.46 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+..+. + -|+..+.|+|||..+..++.++..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444444443332 2 478999999999999888877653
No 266
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.65 E-value=7.5 Score=46.38 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=25.5
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+.+|||||+|.+... ...+...+..+....+++|+++.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 4679999999999542 23444455555555677777653
No 267
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=86.63 E-value=0.066 Score=55.27 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=48.8
Q ss_pred cccCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1723 SGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1723 ~~~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
..++ +++.++.+| .+|++..+++|+.++++|.+++. +-..|+.|+|....|-..|+.+
T Consensus 16 ~~d~-~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~l 74 (104)
T cd05522 16 ERDE-NGRLLTLHFEKLPDKAREPEYYQEISNPISLDD-IKKKVKRRKYKSFDQFLNDLNL 74 (104)
T ss_pred HhCc-CCCcccHHHhcCCCccccCcHHHHhCCCcCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 3344 679999999 99999999999999999999987 7889999999877766656554
No 268
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.34 E-value=3.6 Score=53.57 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=27.3
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCCCC
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
.+|+++||||+|.|-.. ...+.+.|.......+++|+.|-...
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence 47899999999999532 22344555555555666666554333
No 269
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.28 E-value=5.9 Score=51.39 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=25.2
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
+++++||||+|.+... -..+.+.|.......+++|+.|-
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 6889999999999542 22344444444455567776653
No 270
>PRK08116 hypothetical protein; Validated
Probab=86.23 E-value=6.1 Score=47.35 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=31.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
+.+.+|.-++|+|||..+.+++.++... ..+++++.-..++..+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i~~ 159 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRIKS 159 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHHH
Confidence 3457899999999999999998888753 235555553444444433
No 271
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=85.88 E-value=3.7 Score=54.43 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+..+ ..-||....|+|||..+..+...|..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 344444444444333 23588999999999999888877754
No 272
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.86 E-value=5.6 Score=52.54 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=57.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhH-hHHHHHHHhhccc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQR-SRLFSQEVAALKF 1101 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deR-k~l~~qei~~~~f 1101 (1953)
|+.-+-|+|||..+..+..++....+..+...-.|+. +.+|.. .....++.+.|..... ..+
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~------c~~i~~-g~~~d~~eid~~s~~~v~~i---------- 104 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP------CVEITE-GRSVDVFEIDGASNTGVDDI---------- 104 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH------HHHHhc-CCCCCeeeeeccCccCHHHH----------
Confidence 7899999999999988887765422211111112322 223322 1233444444432110 000
Q ss_pred cEEEEeHHHHHhhhhcc-cccCccEEEcccccccCC-chhHHHHHhhhcccceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L-~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGT 1159 (1953)
..++...... ...+|+++||||+|.|-. ....+.+.|.......+++|+.|
T Consensus 105 -------r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 105 -------RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred -------HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 0011111111 124689999999999853 22345555555555556666555
No 273
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.80 E-value=2.7 Score=55.77 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..|...+..+. +. |+...-|+|||-.+..+...+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555555555544432 33 88999999999998888777653
No 274
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.72 E-value=4.3 Score=52.72 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=73.4
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEE
Q 000169 1324 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402 (1953)
Q Consensus 1324 i~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLL 1402 (1953)
...|||.++...++......|.+|||.+.....+..+.+.|+.+ |..+..++|.++..+|.+...+...++.. |++
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVV 81 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVI 81 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 45689999988888888888999999999999888888877754 77889999999999998888777654444 566
Q ss_pred eccccccccCCccCCeEEEcC
Q 000169 1403 SIRAAGRGLNLQSADTVIIYD 1423 (1953)
Q Consensus 1403 STrAGGeGLNLQaADtVIifD 1423 (1953)
.|+.+-. +-+...+.||+-+
T Consensus 82 GTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 82 GTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CChHHHc-CcccCCCEEEEEC
Confidence 6665322 3455666777654
No 275
>PRK08727 hypothetical protein; Validated
Probab=85.55 E-value=7 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=19.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.+|..+.|+|||-.+.++...+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 589999999999888887766654
No 276
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=85.48 E-value=0.92 Score=53.18 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=58.4
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000169 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (1953)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei 1096 (1953)
.|-.|-|++...|+|||-.+.+|...|+-. ..++-+.... ..+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~-----------------~~ke~vLELN----------ASd---------- 88 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGD-----------------SYKEAVLELN----------ASD---------- 88 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhCh-----------------hhhhHhhhcc----------Ccc----------
Confidence 345577999999999998888887776521 0111111110 011
Q ss_pred hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh-HHHHHhhhcccceeEEe
Q 000169 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES-VLARDLDRYRCQRRLLL 1156 (1953)
Q Consensus 1097 ~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S-KlsraLk~L~a~~RLLL 1156 (1953)
..+.|||-.+...|...+-.|...+.+.||+|||+-|-...- .+.+.+.-|....|++|
T Consensus 89 -eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 89 -ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred -ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 122344444444555555667778899999999999864332 23334444444444443
No 277
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.37 E-value=3.6 Score=50.16 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=28.6
Q ss_pred hhcccccCccEEEcccccccCC-chhHHHH---Hhhhcccc--eeEEecccC
Q 000169 1115 RSKLSKVDWKYIIIDEAQRMKD-RESVLAR---DLDRYRCQ--RRLLLTGTP 1160 (1953)
Q Consensus 1115 ~s~L~kikWd~VIIDEAHrLKN-~~SKlsr---aLk~L~a~--~RLLLTGTP 1160 (1953)
...|..++..++||||.|++.. ...+... +|+.+... --+.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 3567778999999999999743 3333333 33333222 245667776
No 278
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=85.17 E-value=0.73 Score=51.00 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=27.0
Q ss_pred hccccEEEEeHHHHHhhhh--cc--cccCccEEEcccccccCC
Q 000169 1098 ALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1098 ~~~fdVVITTYEsL~kd~s--~L--~kikWd~VIIDEAHrLKN 1136 (1953)
....+|||++|.++..... .+ ...+-.+|||||||++-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4567999999999986531 22 223557899999999854
No 279
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.98 E-value=6.6 Score=51.93 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCCC---eEEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKLN---GILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~ln---GILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|...+.+|...+..+.- -||.-+.|+|||..+..++.++.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55566666655554432 28999999999999988877664
No 280
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.86 E-value=4.8 Score=52.63 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCC-C-Ce-EEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK-L-NG-ILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~-l-nG-ILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|...+..+...+..+ . +. |+..+.|+|||..+-.+...+.
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444444443332 2 33 7999999999988887776664
No 281
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=84.70 E-value=3.3 Score=49.32 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=60.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
-||+.+.|+|||..+.++...+..........-..| ..+...-..|.|++..+.-.+... .
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~lel~~s~~~~--------------~ 87 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC-----RSCKLIPAGNHPDFLELNPSDLRK--------------I 87 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch-----hhhhHHhhcCCCceEEecccccCC--------------C
Confidence 588999999999999999888774322221111111 112222222223322221111110 0
Q ss_pred cEEEEeHHHHHhhhhccc-ccCccEEEcccccccCC-chhHHHHHhhhcccceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLS-KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~-kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGT 1159 (1953)
+|++.-+..+........ ...|.+||||||+.|-- ....+.+.+.......+++|+..
T Consensus 88 ~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 88 DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 111111111111111111 35799999999999943 33455566666677777777764
No 282
>PRK06921 hypothetical protein; Provisional
Probab=84.41 E-value=6.8 Score=46.90 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
+.+.+|.-++|+|||..+.+++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 456789999999999999988887765
No 283
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=84.26 E-value=7.8 Score=49.47 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=54.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
.+|..+.|+|||..+-++...+....+ ...++.|....++..+...+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~~----------------------------- 200 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRNN----------------------------- 200 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHcC-----------------------------
Confidence 578999999999998888877765321 22344444333443333333210
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCch---hHHHHHhhhcc-cceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~---SKlsraLk~L~-a~~RLLLTGT 1159 (1953)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+. ....+++|++
T Consensus 201 -----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 201 -----TMEEFK---EKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred -----cHHHHH---HHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 111111 1122 47799999999986533 23444444432 3345777765
No 284
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.24 E-value=5.2 Score=52.08 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+..+ ...||..+.|+|||..+-.+...+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444433333 35689999999999998887776653
No 285
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=84.24 E-value=6 Score=52.81 Aligned_cols=149 Identities=12% Similarity=0.161 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH----HHHHHH-----HH
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN----WKSELH-----KW 1072 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~Q----W~~Ef~-----Kw 1072 (1953)
|+=..-|+.+...|.++...++++ =|.|||..+..++.++....+ -.++|.+|.. +... -..-+. .|
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 344556788888899888888876 799999988877777664332 4688888843 2222 112222 67
Q ss_pred CCCCe-EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcc-c
Q 000169 1073 LPSVS-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (1953)
Q Consensus 1073 aPslk-Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~-a 1150 (1953)
+|... ++...|+.....-..+.....+...+.+.+. ..+......+++||||||+-+.. ..+...+-.+. .
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ar-----s~~s~RG~~~DLLIVDEAAfI~~--~~l~aIlP~l~~~ 321 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLAS-----SPNAARGQNPDLVIVDEAAFVNP--GALLSVLPLMAVK 321 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEecc-----cCCCcCCCCCCEEEEECcccCCH--HHHHHHHHHHccC
Confidence 77653 2323332211000000000001112222221 12334445789999999999965 22332222232 3
Q ss_pred ceeEEecccCC
Q 000169 1151 QRRLLLTGTPL 1161 (1953)
Q Consensus 1151 ~~RLLLTGTPL 1161 (1953)
...+++.-||.
T Consensus 322 ~~k~IiISS~~ 332 (752)
T PHA03333 322 GTKQIHISSPV 332 (752)
T ss_pred CCceEEEeCCC
Confidence 45666666764
No 286
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=83.93 E-value=2.6 Score=43.12 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=23.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (1953)
||.-+.|+|||..+-.++.++ .-+++.|....+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISS 37 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTS
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccccc
Confidence 677889999998876666543 124555555555533
No 287
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.87 E-value=6.8 Score=49.30 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+.++ .+ -|+..+.|+|||..+.++..++.-
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344444444444433 12 478999999999999888777653
No 288
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=83.82 E-value=4.1 Score=50.03 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEE
Q 000169 1004 YQIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIY 1080 (1953)
Q Consensus 1004 YQleGL~WLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvv 1080 (1953)
.|...+..+...+..+ .+. |+..+-|+|||..+..++..++...+..+...=.|+ ....-.....|++..+.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~-----~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT-----NCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCH-----HHHHHhcCCCCCEEEec
Confidence 4555566665555433 234 899999999999998888777643211121111221 11222223346665554
Q ss_pred EecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc----cccCccEEEcccccccCC-chhHHHHHhhhcccceeEE
Q 000169 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1155 (1953)
Q Consensus 1081 y~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L----~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLL 1155 (1953)
..|..- +.+.++.-...+ ..-.++++||||+|+|.. ....+.+.|..-.....++
T Consensus 85 ~~~~~i--------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PDGQSI--------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred cccccC--------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 443211 112221111111 123689999999999953 2334555555555566777
Q ss_pred eccc
Q 000169 1156 LTGT 1159 (1953)
Q Consensus 1156 LTGT 1159 (1953)
|+.+
T Consensus 145 l~t~ 148 (329)
T PRK08058 145 LLTE 148 (329)
T ss_pred EEeC
Confidence 7665
No 289
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.70 E-value=8.4 Score=49.50 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=55.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
.+|..++|+|||..+-++..++..... ...++.|....++......+..-.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~---------------------------- 194 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTH---------------------------- 194 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhh----------------------------
Confidence 468999999999888777766654322 234555554444444443332100
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCch---hHHHHHhhhcc-cceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~---SKlsraLk~L~-a~~RLLLTGT 1159 (1953)
..++.+ ...+ ...+++||||.|.+.+.. ..++..+..+. ....++||+.
T Consensus 195 ----~~~~~~---~~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 ----KEIEQF---KNEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred ----hHHHHH---HHHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 001111 1112 256899999999987532 23444444443 3346788843
No 290
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=83.70 E-value=4.3 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-|+..+.|+|||..+.++...+..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 478999999999999888776654
No 291
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.69 E-value=6 Score=45.39 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
....+|..+.|+|||..+.++...+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44568999999999988877665544
No 292
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=83.69 E-value=7.8 Score=40.67 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
+|.-+.|+|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 57778999999999888776654 34567776643
No 293
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.51 E-value=6.2 Score=53.10 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=73.9
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS 1403 (1953)
..+||..+...++......|.+|||.+.....+..+.+.|... |..+..++|+++..+|.+...+...++.+ |+++
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 4589999887777777777999999999999888877777653 78899999999999998888888765544 5667
Q ss_pred ccccccccCCccCCeEEEcCC
Q 000169 1404 IRAAGRGLNLQSADTVIIYDP 1424 (1953)
Q Consensus 1404 TrAGGeGLNLQaADtVIifDp 1424 (1953)
|+.+- =+.+.....||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 76432 245666777776553
No 294
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.17 E-value=8.5 Score=48.36 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=54.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
.+|..+.|+|||..+.++..++.+.. ....++.|....++..+...+.. +
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 188 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRN-----------N------------------ 188 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 37999999999999988887776532 12344444433333222222211 0
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCch---hHHHHHhhhc-ccceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~---SKlsraLk~L-~a~~RLLLTGT 1159 (1953)
+.+.+.. .+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 189 -----~~~~~~~---~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 189 -----KMEEFKE---KYR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred -----CHHHHHH---HHH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 1111211 111 35799999999986542 2344444443 33456777775
No 295
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=82.98 E-value=5.9 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-|+.-+.|+|||..+.+++..+..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc
Confidence 489999999999999888877764
No 296
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=82.84 E-value=2.1 Score=50.20 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=64.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHH-HHHHHHHHHCCCCeE
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLV-NWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~-QW~~Ef~KwaPslkV 1078 (1953)
|-+-|..+|.+ . ....++-...|+|||.+.+.-+.+++... .....+|+|+++.... .-...+...++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~- 73 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQ- 73 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccc-
Confidence 45678888876 2 33445556699999999999999998755 3445789999877533 23333333211000
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEccccc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAH 1132 (1953)
.....+. .+. ........+.|.|+..+... ......+.-.+-|+|+..
T Consensus 74 --~~~~~~~--~~~--~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 --QESSDNE--RLR--RQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --HCCTT-H--HHH--HHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --ccccccc--ccc--ccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000000 000 11122346788888877543 222223344566666654
No 297
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=82.81 E-value=9.7 Score=48.75 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=25.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (1953)
.+|..+.|+|||..+-++..++.+... ...++.|..
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~ 168 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITS 168 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEH
Confidence 579999999999888887777765322 224555543
No 298
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=82.52 E-value=4.4 Score=50.03 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=75.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K-waPs 1075 (1953)
.++|+|......+...+..+. ++ |++.+-|+||+..+.++..+++-..+..+...=.|+.. .-|.. --|+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC------~~~~~g~HPD 75 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGC------QLMQAGTHPD 75 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH------HHHHcCCCCC
Confidence 478999999988888876543 23 68999999999999999988875322211111133322 11111 1255
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc----cccCccEEEcccccccCC-chhHHHHHhhhccc
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L----~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a 1150 (1953)
+..+.-.++.. ..+.+.++.-...+ ..-.|+++|||+|++|.. ....+.+.|..=..
T Consensus 76 ~~~i~p~~~~~------------------~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (334)
T PRK07993 76 YYTLTPEKGKS------------------SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPE 137 (334)
T ss_pred EEEEecccccc------------------cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCC
Confidence 54443222110 01111221111111 123789999999999953 23345555555444
Q ss_pred ceeEEeccc
Q 000169 1151 QRRLLLTGT 1159 (1953)
Q Consensus 1151 ~~RLLLTGT 1159 (1953)
...++|+.+
T Consensus 138 ~t~fiL~t~ 146 (334)
T PRK07993 138 NTWFFLACR 146 (334)
T ss_pred CeEEEEEEC
Confidence 455666554
No 299
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=82.49 E-value=5.7 Score=55.38 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=72.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslk 1077 (1953)
+..|-+-|..+|..++.- +.-.+|.-..|+|||.+. ..+..+++.. ...+++++|+.....=..+- .
T Consensus 344 g~~Ls~eQr~Av~~il~s---~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e~---t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTDG---RDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEGG---S---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhcC---CCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhhc---c----
Confidence 347999999999877641 223578888999999864 4444444432 23678888987544322210 0
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHh--hhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeE
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~k--d~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RL 1154 (1953)
|... .|...+.. ..........++|||||+-.+-. ..+.+.|... ....+|
T Consensus 411 -----Gi~a-------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~--~~m~~LL~~a~~~garv 464 (988)
T PRK13889 411 -----GIAS-------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT--RQLERVLSHAADAGAKV 464 (988)
T ss_pred -----Ccch-------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH--HHHHHHHHhhhhCCCEE
Confidence 1000 00011100 00011123568999999998743 2333444333 456799
Q ss_pred EecccCCCCC
Q 000169 1155 LLTGTPLQND 1164 (1953)
Q Consensus 1155 LLTGTPLQNn 1164 (1953)
+|.|=|-|-.
T Consensus 465 VLVGD~~QLp 474 (988)
T PRK13889 465 VLVGDPQQLQ 474 (988)
T ss_pred EEECCHHHcC
Confidence 9999876543
No 300
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.33 E-value=4.1 Score=56.06 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|..-|.+++... +...|.||.-+.|+|||..+=++...+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 444577777643 2345779999999999988866665543
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=82.19 E-value=6.5 Score=43.18 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=33.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (1953)
.+|+.+.|+|||..++.++..... ...++++|.......+....+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCHHHHHHHHHH
Confidence 378889999999999988877663 23578888865555554444443
No 302
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.11 E-value=8.5 Score=49.95 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|...+..+...+.++. ++ |++-+.|+|||..+..+...+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444555555444332 33 6899999999988877666554
No 303
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=81.92 E-value=6.8 Score=51.61 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=19.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-|++.+.|+|||..+-.+...+..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 377999999999988777766543
No 304
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=81.86 E-value=15 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=18.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
.+.+|.-+.|+|||..+.++...
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 35689999999999887665543
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.77 E-value=9.1 Score=48.17 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEV 1096 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaP--slkVvvy~Gs~deRk~l~~qei 1096 (1953)
+...+|.-.+|+|||.++..++..+....+. .++.+|+-...-..=.+.+..|+. ++.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~-------------- 201 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK-------------- 201 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEecC--------------
Confidence 4456789999999999998888776542222 245555532211111122222221 11111111
Q ss_pred hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-----ccceeEEecccCCCCCHHHHHH
Q 000169 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1097 ~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-----~a~~RLLLTGTPLQNnL~ELwS 1170 (1953)
+...+......+ .+.++|+||.+=+.-.. ..+...+..+ .....|.|++|--...+.+++.
T Consensus 202 ----------~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 202 ----------DGGDLQLALAEL--RNKHMVLIDTIGMSQRD-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ----------CcccHHHHHHHh--cCCCEEEEcCCCCCccc-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 111111111222 24689999998765322 2233333333 2345788899986666666543
No 306
>PRK14974 cell division protein FtsY; Provisional
Probab=81.75 E-value=13 Score=46.16 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=28.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech----HHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN----AVLVNWKSELH 1070 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~----SLL~QW~~Ef~ 1070 (1953)
.++.-..|+|||-++..++.++.. . ..+++++... ..+.+|..-..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~-~--g~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK-N--GFSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-c--CCeEEEecCCcCcHHHHHHHHHHHH
Confidence 467889999999888777766643 2 2355555532 34556644333
No 307
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=81.37 E-value=1.3 Score=60.20 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=75.7
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HH----HHHHHHHHHHCCCCeEEEEecchhhHhH
Q 000169 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VL----VNWKSELHKWLPSVSCIYYVGAKDQRSR 1090 (1953)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL----~QW~~Ef~KwaPslkVvvy~Gs~deRk~ 1090 (1953)
|.-..+.++.+.+|.|||+.+-..+.+.+...+. +++.+|+|.. ++ ..|...+.. |+++++-..|.....
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd-- 1014 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD-- 1014 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC--
Confidence 4445567889999999999997777766654444 7899999965 43 347655443 578887777654322
Q ss_pred HHHHHHhhccccEEEEeHHHHHhhhhcccc----cCccEEEcccccccCCc
Q 000169 1091 LFSQEVAALKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKDR 1137 (1953)
Q Consensus 1091 l~~qei~~~~fdVVITTYEsL~kd~s~L~k----ikWd~VIIDEAHrLKN~ 1137 (1953)
-......+++|||++........... -.+..+|+||.|.++..
T Consensus 1015 ----~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 ----VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ----hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 12345679999999976433211111 14667999999998643
No 308
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=81.17 E-value=2.6 Score=51.40 Aligned_cols=41 Identities=20% Similarity=0.018 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1004 YQIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1004 YQleGL~WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
+|...|+-|..... ...+-++..+.|+|||-++.++...|.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 57776666654432 344568899999999999998887765
No 309
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=80.92 E-value=5.2 Score=51.43 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHhh--------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLY--------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~--------~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (1953)
.+++..+.+.|.+... ....+.||+...|+|||+.+-++..++ ..+++-|-...++..|.-|..+.
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHHH
Confidence 3444555555555332 234467899999999999998776532 23666666559999999888763
No 310
>PRK06893 DNA replication initiation factor; Validated
Probab=80.80 E-value=10 Score=44.08 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.+|..+.|+|||-.+.++...+..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 379999999999888777766654
No 311
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=80.38 E-value=6.8 Score=48.29 Aligned_cols=146 Identities=14% Similarity=0.054 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K-waPs 1075 (1953)
.++|+|......+...+..+. .-++..+.|+||+..+..++.+++-.....++ .=.|+.. .-+.. -.|+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~-Cg~C~sC------~~~~~g~HPD 75 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEA-CGFCHSC------ELMQSGNHPD 75 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCHHH------HHHHcCCCCC
Confidence 478899888888887765443 24788999999999999998888753321111 1112211 11111 1255
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcc----cccCccEEEcccccccCC-chhHHHHHhhhccc
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L----~kikWd~VIIDEAHrLKN-~~SKlsraLk~L~a 1150 (1953)
+.++.-.+... . .+.+.++.-...+ ..-.|+++|||+||+|.. ....+.+.|..=..
T Consensus 76 ~~~i~p~~~~~---~---------------I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (319)
T PRK06090 76 LHVIKPEKEGK---S---------------ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred EEEEecCcCCC---c---------------CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCC
Confidence 54442211000 0 0111221111111 123689999999999953 23345566665555
Q ss_pred ceeEEecccCCCCCHHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWS 1170 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwS 1170 (1953)
...++|+.+=...-+.-+.|
T Consensus 138 ~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CeEEEEEECChhhChHHHHh
Confidence 55666665533333333333
No 312
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=80.29 E-value=8.9 Score=45.37 Aligned_cols=54 Identities=28% Similarity=0.318 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHC-CCCeEEEEecc
Q 000169 1028 MGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWL-PSVSCIYYVGA 1084 (1953)
Q Consensus 1028 MGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~Ef~Kwa-PslkVvvy~Gs 1084 (1953)
=|.|||-.+++|...+.. ++ ++++||= |+.-+..|.+-..+-. ....+.+|...
T Consensus 11 GGaGKTT~~~~LAs~la~-~G--~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~ 67 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAA-RG--ARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD 67 (231)
T ss_pred CCCcHHHHHHHHHHHHHH-CC--CeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc
Confidence 389999999888887764 22 3455544 7778889976554432 23334445443
No 313
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=80.18 E-value=0.16 Score=52.80 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=44.6
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
+++.++.+| .+|+++.+|+|++++++|++++. +-..|+. |....+-..|+.+ .||+|+
T Consensus 20 ~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~t-I~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 88 (106)
T cd05521 20 NGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNT-VKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIY 88 (106)
T ss_pred CCCCchHhhhcCCccccCccHHHHhcCCCCHHH-HHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 478899999 99999999999999999999876 5566665 6555554444443 677776
No 314
>PRK04195 replication factor C large subunit; Provisional
Probab=80.09 E-value=11 Score=48.82 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
....||..+.|+|||..+-+++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999877666543
No 315
>PRK05642 DNA replication initiation factor; Validated
Probab=80.08 E-value=12 Score=43.73 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=25.2
Q ss_pred CccEEEcccccccCCch---hHHHHHhhhccc-ceeEEeccc
Q 000169 1122 DWKYIIIDEAQRMKDRE---SVLARDLDRYRC-QRRLLLTGT 1159 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~---SKlsraLk~L~a-~~RLLLTGT 1159 (1953)
..+++|||+.|.+.+.. ..++..+..+.. ..++++|+|
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 34789999999885432 335555555443 467888886
No 316
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=80.06 E-value=13 Score=49.60 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=56.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
.+|.-..|+|||-.+.++..++.... ....++.|.-..++..+...+.. +
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~-----------~------------------ 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRD-----------G------------------ 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHh-----------c------------------
Confidence 57899999999988888777766422 12344555444444444433321 0
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh---HHHHHhhhccc-ceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRC-QRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L~a-~~RLLLTGT 1159 (1953)
.++.+. ..+. ..++||||+.|.+.+... .++..+..+.. ...|++|+.
T Consensus 367 -----~~~~f~---~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 367 -----KGDSFR---RRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred -----cHHHHH---HHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 011111 1122 368999999999976433 35555555433 345777664
No 317
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=79.78 E-value=8.6 Score=52.13 Aligned_cols=137 Identities=15% Similarity=0.073 Sum_probs=71.5
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-CeEEEe-ch-----HHHHHHHHHHHHHCCCCeEEEEecchh
Q 000169 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-PHLIIV-PN-----AVLVNWKSELHKWLPSVSCIYYVGAKD 1086 (1953)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G-P~LIVV-P~-----SLL~QW~~Ef~KwaPslkVvvy~Gs~d 1086 (1953)
.....+.-.|+--++|+|||-++..+|+.-+-...... .-.+|| |. +++....+|=..-.. .++.|.-
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g--~tvgy~v--- 462 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG--ETCGYNV--- 462 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc--ccccccc---
Confidence 33444666788889999999999888877654333222 112333 43 344333333222111 1111211
Q ss_pred hHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcc----cceeEEecccC
Q 000169 1087 QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR----CQRRLLLTGTP 1160 (1953)
Q Consensus 1087 eRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~----a~~RLLLTGTP 1160 (1953)
.+.. ......--++.+|.+.+.+.... -.....++|+||.|..--..--+...+..+. .-+.+++++|-
T Consensus 463 Rf~S----a~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 463 RFDS----ATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred cccc----cccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 0100 11112234677888877654322 1235678999999986433333444444443 33467788874
No 318
>PRK09183 transposase/IS protein; Provisional
Probab=79.64 E-value=9.2 Score=45.61 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=26.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
.+.+.+|.-+.|+|||..+.++...+.. .+ ..++++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~-~G--~~v~~~~ 137 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR-AG--IKVRFTT 137 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEe
Confidence 4677889999999999999888655443 22 3455554
No 319
>CHL00095 clpC Clp protease ATP binding subunit
Probab=79.56 E-value=10 Score=52.09 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..|.||.-+.|+|||..+-++...+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44679999999999998877766554
No 320
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.50 E-value=11 Score=46.55 Aligned_cols=44 Identities=32% Similarity=0.369 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHH-Hhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWML-SLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1002 RPYQleGL~WLl-sL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|+-+++-+.-.+ .... ...+.+|.-..|+|||..+-.++..+..
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 555655554443 2222 2346799999999999988888776654
No 321
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=79.29 E-value=10 Score=42.45 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-||..+.|+|||-.+..++..+..
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 478999999999999888887764
No 322
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=78.93 E-value=14 Score=49.28 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+.++ .+ -|+..+.|+|||..|..+...+..
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444444444332 22 478999999999999888877753
No 323
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=78.85 E-value=6.1 Score=48.77 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=37.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEF 1046 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~ 1046 (1953)
.++|++......+...+..+. ++ |+..+.|+||+..+..+..+++-.
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 367888888888887776543 34 688999999999999999888753
No 324
>PRK10865 protein disaggregation chaperone; Provisional
Probab=78.46 E-value=6.2 Score=54.47 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=28.1
Q ss_pred HHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1006 IVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1006 leGL~WLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..-+..++... ....|.||..+.|+|||..+-++...+.
T Consensus 184 ~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 184 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 33477777643 3345779999999999988877766554
No 325
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=78.37 E-value=6.4 Score=47.12 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=28.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH------HHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL------VNWKSELH 1070 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL------~QW~~Ef~ 1070 (1953)
-+.++.++|+|||+..=+++..+- ....++|+.|..++ .-|..++.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhc
Confidence 356789999999998874443322 22334556676543 33666665
No 326
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=78.35 E-value=5.1 Score=49.86 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (1953)
+|-+-|..++.+++..+. .+.+..|--.-|+|||...=+++.++.. ....+++++|+.+...
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHHHH
Confidence 366789999999877664 4455578889999999888777766542 3457888889876543
No 327
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=78.22 E-value=6.2 Score=49.06 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLMEF 1046 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lle~ 1046 (1953)
++|+|....+.+..+.+.-.++ ++..+.|+|||..+..+...++-.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5788888888887763332334 578999999999999998888753
No 328
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=77.95 E-value=15 Score=44.86 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=19.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-||.-+.|+|||..+..+...+..
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 378999999999888887776653
No 329
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=77.88 E-value=11 Score=50.70 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=69.7
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHH----HHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI----LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDI----Led~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
..|||..+..-.+......|.++||.+.....+.- +..++...|+++..++|+++..+|..+++....++.+ |
T Consensus 291 TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~--I- 367 (681)
T PRK10917 291 VGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD--I- 367 (681)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC--E-
Confidence 35888776554444444678899999988876654 4555556689999999999999999999999865555 4
Q ss_pred EEecc-ccccccCCccCCeEEEcCC
Q 000169 1401 LLSIR-AAGRGLNLQSADTVIIYDP 1424 (1953)
Q Consensus 1401 LLSTr-AGGeGLNLQaADtVIifDp 1424 (1953)
+++|. .....+.+.....||+=.-
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVIIDEQ 392 (681)
T ss_pred EEchHHHhcccchhcccceEEEech
Confidence 44554 4555677888888776333
No 330
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=77.37 E-value=14 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-|++.+.|+|||..|-.++..+..
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcc
Confidence 379999999999999888776653
No 331
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=77.01 E-value=9.5 Score=48.76 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHHhCCCCCeEEEechHHHHH
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEFKGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~kg~~GP~LIVVP~SLL~Q 1064 (1953)
.-++..|..|+.+..++.|.|+--+.|+|||-.+.++-.+ .+. .+ ..+++..|+.+
T Consensus 193 r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~-sG-----~f~T~a~Lf~~ 249 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILI-SG-----GTITVAKLFYN 249 (449)
T ss_pred HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHH-cC-----CcCcHHHHHHH
Confidence 3455566666667778999999999999999888887655 332 22 44555555544
No 332
>PRK12377 putative replication protein; Provisional
Probab=76.37 E-value=16 Score=43.51 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (1953)
.+.+|..++|+|||-.+.++...+.. .+ ..++++.-..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~-~g--~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA-KG--RSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-cC--CCeEEEEHHHHHHH
Confidence 45588999999999999999888874 22 23444443344443
No 333
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.34 E-value=7.1 Score=50.11 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=53.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~f 1101 (1953)
.+|..+.|+|||-.+-++..++... ..+++.|....+.......+.. +
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~~~~~~~l~~-----------~------------------ 191 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFTEHLVSAIRS-----------G------------------ 191 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHHHHHHHHHhc-----------c------------------
Confidence 5789999999999888887777642 2355555433333322222210 0
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh---HHHHHhhhc-ccceeEEeccc
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-RCQRRLLLTGT 1159 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L-~a~~RLLLTGT 1159 (1953)
..+.+. ..+ ...+++||||.|.+.+... .+...+..+ .....+++|++
T Consensus 192 -----~~~~f~---~~~--~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~ 243 (445)
T PRK12422 192 -----EMQRFR---QFY--RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISST 243 (445)
T ss_pred -----hHHHHH---HHc--ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecC
Confidence 001111 111 2568999999999865322 334444433 23457888875
No 334
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=76.31 E-value=10 Score=47.68 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=38.0
Q ss_pred HHHHHHHHHh-hcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000169 1006 IVGLQWMLSL-YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (1953)
Q Consensus 1006 leGL~WLlsL-~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (1953)
..+++.++.- +..+.-.+|.-++|.|||..++.++..+.. ..+++|+|.-.....+......+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs~~qi~~Ra~r 131 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEESPEQIKLRADR 131 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcCHHHHHHHHHH
Confidence 4456666531 122223478899999999988887766653 23578888754444444433333
No 335
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=75.72 E-value=8.4 Score=53.18 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|..-|.+++.... ...|.||.-+.|+|||..+-+++..+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3445777776543 345779999999999988877766554
No 336
>PRK13342 recombination factor protein RarA; Reviewed
Probab=75.71 E-value=7.8 Score=48.99 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=16.6
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa 1041 (1953)
+.||.-+.|+|||..+-++..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568999999999977765543
No 337
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=75.60 E-value=6.8 Score=44.46 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=37.1
Q ss_pred hhcccccCccEEEcccccccCC----chhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhh
Q 000169 1115 RSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL 1174 (1953)
Q Consensus 1115 ~s~L~kikWd~VIIDEAHrLKN----~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnF 1174 (1953)
...+..-.|++||+||.-.+-+ ....+...|..-+...-++|||.-. +.+|..+-++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~ 150 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELADL 150 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCce
Confidence 4556667899999999876544 2334555565555666899999744 4455544443
No 338
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.98 E-value=62 Score=39.27 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=81.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec----hHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP----NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP----~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~q 1094 (1953)
+....|....|+|||..+..+...+.. ....+.+|.- ...+.+|.......
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~---------------------- 129 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTI---------------------- 129 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhc----------------------
Confidence 345578888999999887666655532 2234555553 24666776433321
Q ss_pred HHhhccccEEE-EeHHHHHhhhhcccc-cCccEEEcccccccCCchhHHH---HHhhhccc-ceeEEecccCCCCCHHHH
Q 000169 1095 EVAALKFNVLV-TTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRESVLA---RDLDRYRC-QRRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1095 ei~~~~fdVVI-TTYEsL~kd~s~L~k-ikWd~VIIDEAHrLKN~~SKls---raLk~L~a-~~RLLLTGTPLQNnL~EL 1168 (1953)
++.++. .+...+......+.. .++++||||-+=+.-+....+. ..+..... ...|.|++|--.++..+.
T Consensus 130 -----~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 130 -----GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred -----CceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 122221 122223222223322 3689999998876532222222 22222222 235678888777777777
Q ss_pred HHHHhhhccc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000169 1169 WSLLNLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1203 (1953)
Q Consensus 1169 wSLLnFLlP~-----------iF~S~k~F~e~F~kPf~k~g~~~~~ 1203 (1953)
...|+-+.+. .++..-.+...+..|+...+.....
T Consensus 205 ~~~f~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~~it~Gq~v 250 (270)
T PRK06731 205 ITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 250 (270)
T ss_pred HHHhCCCCCCEEEEEeecCCCCccHHHHHHHHHCcCEEEEeCCCCC
Confidence 6666654332 1233344555567777665544433
No 339
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.43 E-value=9.6 Score=50.87 Aligned_cols=41 Identities=15% Similarity=0.003 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+..+...+.++. + -|+..+-|+|||..+..+...+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5556666666554432 2 478999999999999888776653
No 340
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=74.22 E-value=11 Score=43.40 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=31.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWK 1066 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV----P~SLL~QW~ 1066 (1953)
-.+|+..+|+|||..++.++....... ..++|++. |..++..+.
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~~~~~~~~r~~ 62 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEMSKEQLLQRLL 62 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCCCHHHHHHHHH
Confidence 358899999999999998887776532 34788888 334554443
No 341
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=9.7 Score=47.60 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=31.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (1953)
...|.+|..+.|+|||+.+-++... ...+++=|-=..+...|.-|-.|.
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake------aga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKE------AGANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHH------cCCCcceeeccccchhhHHHHHHH
Confidence 5667799999999999988776532 122333333344555676555543
No 342
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.02 E-value=11 Score=43.61 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH-HHH--HHHHCCCCeEEEEecchhhHhHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW-KSE--LHKWLPSVSCIYYVGAKDQRSRLFSQE 1095 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW-~~E--f~KwaPslkVvvy~Gs~deRk~l~~qe 1095 (1953)
..+.++....|.|||-.++++...... ...+++||== +-..| .-| +.+.++.+.+..+...-.-........
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g---~G~~V~ivQF--lKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG---HGKKVGVVQF--IKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEE--ecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHH
Confidence 445678889999999999998877664 2335555531 00112 112 222234333332211100000000000
Q ss_pred HhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC----chhHHHHHhhhcccceeEEecccCCCCCHHHHHHH
Q 000169 1096 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSL 1171 (1953)
Q Consensus 1096 i~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN----~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSL 1171 (1953)
.. .-...+......+..-.|++||+||.-.+-+ ....+...|..-+...-|+|||-= -+.+|..+
T Consensus 97 ~~--------~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~---~p~~Lie~ 165 (191)
T PRK05986 97 IA--------AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRG---APRELIEA 165 (191)
T ss_pred HH--------HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHh
Confidence 00 0001122224556667899999999876654 233455555554555689999974 44445444
Q ss_pred Hhh
Q 000169 1172 LNL 1174 (1953)
Q Consensus 1172 LnF 1174 (1953)
.++
T Consensus 166 ADl 168 (191)
T PRK05986 166 ADL 168 (191)
T ss_pred Cch
Confidence 443
No 343
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.98 E-value=30 Score=45.70 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
+...+|...+|+|||..+..|+..+... +....+.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEe
Confidence 4445677889999999888877766542 2223455554
No 344
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=72.21 E-value=15 Score=49.95 Aligned_cols=28 Identities=36% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
...|.||.-+.|+|||..+-++...+..
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457799999999999998777766654
No 345
>PRK14873 primosome assembly protein PriA; Provisional
Probab=71.32 E-value=17 Score=48.96 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=73.9
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-C-CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-Q-LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-G-ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS 1403 (1953)
.|||.+++.+++......|..|||...-......+...|+.+ | ..+..+|+.++..+|.+...+...+... |++.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 489999999999999999999999999999888888888765 3 6789999999999999998888765554 5777
Q ss_pred ccccccccCCccCCeEEEcC
Q 000169 1404 IRAAGRGLNLQSADTVIIYD 1423 (1953)
Q Consensus 1404 TrAGGeGLNLQaADtVIifD 1423 (1953)
|+.+-. +-+.+-..||+-|
T Consensus 247 tRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cceeEE-eccCCCCEEEEEc
Confidence 776543 2333444455433
No 346
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=71.16 E-value=18 Score=46.55 Aligned_cols=41 Identities=15% Similarity=0.008 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|...+.++...+..+. + -|+.-+.|+|||..+.+++.++..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5556666666654432 3 378999999999999888877763
No 347
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=71.04 E-value=15 Score=50.21 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=20.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..|.||.-+.|+|||..+-++...+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45779999999999998877765544
No 348
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=70.82 E-value=19 Score=46.31 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
...+++..+|+|||.++..+..++..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34578899999999999888877654
No 349
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.70 E-value=76 Score=41.00 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=80.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe-c-hHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV-P-NAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV-P-~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~ 1099 (1953)
.+++-..|+|||.++..++..+....+ ..++||. - -.....| .+..|+....
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~e--QLk~yAe~lg---------------------- 279 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIE--QLKRYADTMG---------------------- 279 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHH--HHHHHHHhcC----------------------
Confidence 457889999999999888875532222 2444444 2 2233444 2333321111
Q ss_pred cccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhH---HHHHhhhc----ccceeEEecccCCCCCHHHHHHHH
Q 000169 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY----RCQRRLLLTGTPLQNDLKELWSLL 1172 (1953)
Q Consensus 1100 ~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SK---lsraLk~L----~a~~RLLLTGTPLQNnL~ELwSLL 1172 (1953)
..++ +...+..-...+....+++||||=+-+.-..... +...+... .....|.|++|--++.+.+....+
T Consensus 280 -vp~~--~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 280 -MPFY--PVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred -CCee--ehHHHHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 1111 1111111122233457899999977665322222 22222222 224578889998777777777766
Q ss_pred hhhccc-----------ccCChHHHHhhhcCCcccCCCCCCCCh
Q 000169 1173 NLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNADD 1205 (1953)
Q Consensus 1173 nFLlP~-----------iF~S~k~F~e~F~kPf~k~g~~~~~e~ 1205 (1953)
..+.+. .+|..-.+...+..|+...+......+
T Consensus 357 ~~~~~~glIlTKLDEt~~~G~il~i~~~~~lPI~ylt~GQ~VPe 400 (432)
T PRK12724 357 ESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEVPF 400 (432)
T ss_pred cCCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCC
Confidence 665442 133444455567788776655444433
No 350
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=70.59 E-value=0.41 Score=50.83 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=53.7
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------C-CCccccCCCCccccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQV 1798 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~-~s~~~~~~~~e~~~~ 1798 (1953)
..+.|| .+|+...+|+|+.++++|++++. +-..|+.|+|.-..|-.-|+.. . +|+|| .+-..
T Consensus 21 ~~s~~F~~PVd~~~~pdY~~iIk~PmDL~t-Ik~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~-----~~a~~ 94 (119)
T cd05496 21 EDSEPFRQPVDLLKYPDYRDIIDTPMDLGT-VKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRIY-----SMTLR 94 (119)
T ss_pred CccccccCCCChhhcCcHHHHhCCcccHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHH
Confidence 356788 77888899999999999999977 7789999999877777666655 3 68888 55555
Q ss_pred cchhhhc
Q 000169 1799 LQPKIKR 1805 (1953)
Q Consensus 1799 ~q~~~~~ 1805 (1953)
|+-.|++
T Consensus 95 L~~~F~~ 101 (119)
T cd05496 95 LSALFEE 101 (119)
T ss_pred HHHHHHH
Confidence 6555544
No 351
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=70.31 E-value=20 Score=45.80 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=27.3
Q ss_pred CccEEEcccccccCCc---hhHHHHHhhhccc-ceeEEecc--cCC
Q 000169 1122 DWKYIIIDEAQRMKDR---ESVLARDLDRYRC-QRRLLLTG--TPL 1161 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~---~SKlsraLk~L~a-~~RLLLTG--TPL 1161 (1953)
..++++||..+.+.+. .-.+...+..+.. ...|+||+ +|-
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~ 220 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPK 220 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCch
Confidence 6789999999998765 3344445555533 34888888 663
No 352
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=70.23 E-value=23 Score=47.46 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=67.6
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHH----HHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE----YLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed----~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
..|||..+..-.+......|.++||-+.....+.-+.+ +|...|+++..++|+++..+|..+++....++.+ |+
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~--Ii 342 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH--LV 342 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC--EE
Confidence 45788765433333334578899999998877665544 4445589999999999999999999998865544 44
Q ss_pred EEeccccccccCCccCCeEEEcC
Q 000169 1401 LLSIRAAGRGLNLQSADTVIIYD 1423 (1953)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifD 1423 (1953)
+.+....-..+.+.....||+=.
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred EecHHHHhccccccccceEEEec
Confidence 44444444567777788777633
No 353
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=69.99 E-value=16 Score=47.92 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..+.||.-++|+|||..+-++...+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 45678999999999998877776653
No 354
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=69.86 E-value=32 Score=48.84 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=71.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV 1078 (1953)
..|-+-|..++..+.. .+.-++|.-.-|+|||.+.-+++ .+++.. ...++.++|+.-... .+.+-+ ++.
T Consensus 380 ~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~-~~~e~~--G~~V~g~ApTgkAA~---~L~e~~-Gi~- 448 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAAR-EAWEAA--GYRVVGGALAGKAAE---GLEKEA-GIQ- 448 (1102)
T ss_pred CCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHH-HHHHHc--CCeEEEEcCcHHHHH---HHHHhh-CCC-
Confidence 4699999999987642 23335778889999997775544 444332 346778888764432 222211 010
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHH-Hhh-hhcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeEE
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-MYD-RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1155 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL-~kd-~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RLL 1155 (1953)
-.|...+ ... .....-..-++||||||.-+-. ..+...|... ....+|+
T Consensus 449 --------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~--~~m~~Ll~~~~~~garvV 500 (1102)
T PRK13826 449 --------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS--RQMALFVEAVTRAGAKLV 500 (1102)
T ss_pred --------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEEE
Confidence 0111111 000 0000111356999999998732 3333444444 3567999
Q ss_pred ecccCCCCC
Q 000169 1156 LTGTPLQND 1164 (1953)
Q Consensus 1156 LTGTPLQNn 1164 (1953)
|.|=|-|-.
T Consensus 501 LVGD~~QL~ 509 (1102)
T PRK13826 501 LVGDPEQLQ 509 (1102)
T ss_pred EECCHHHcC
Confidence 999886654
No 355
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=69.77 E-value=1.5e+02 Score=39.98 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=32.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (1953)
..|.+||.+.|+|||+.|=|+...- + --|+-|--..|+..|.-|=++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa----g--~NFisVKGPELlNkYVGESEr 591 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA----G--ANFISVKGPELLNKYVGESER 591 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc----c--CceEeecCHHHHHHHhhhHHH
Confidence 4567999999999999987776431 1 134445456688888776554
No 356
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=69.72 E-value=14 Score=49.42 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=63.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEec-hHHHHHHHHHHHHHCCCCeE
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVP-NAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP-~SLL~QW~~Ef~KwaPslkV 1078 (1953)
|-|-|.+++.+- ....++-...|+|||-+.+.-|.+++...+ ....+|+|+. ......-...+.+.++.
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~--- 72 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGK--- 72 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCc---
Confidence 678898887642 234566667999999999999999996433 3345777774 44555555556554321
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hc--ccccCccEEEccccc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SK--LSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~--L~kikWd~VIIDEAH 1132 (1953)
.....|.|.|+..+.... .. ...+.-.+-|+|+..
T Consensus 73 -------------------~~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~ 111 (664)
T TIGR01074 73 -------------------GEARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETD 111 (664)
T ss_pred -------------------cccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHH
Confidence 012357788888775431 11 111233456777764
No 357
>PRK04132 replication factor C small subunit; Provisional
Probab=69.44 E-value=13 Score=51.29 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=33.8
Q ss_pred CccEEEcccccccCC-chhHHHHHhhhcccceeEEecccCCCCCHHHHH
Q 000169 1122 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQNDLKELW 1169 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELw 1169 (1953)
+|.+|||||+|+|-. ....+.+.+..+....+++|+.++...-+.-|.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr 678 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 678 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh
Confidence 588999999999953 334556666666777889999887554443333
No 358
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=69.33 E-value=38 Score=39.46 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=25.1
Q ss_pred CccEEEcccccccCCch---hHHHHHhhhc-ccceeEEecc
Q 000169 1122 DWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTG 1158 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~---SKlsraLk~L-~a~~RLLLTG 1158 (1953)
..+++|||..|.+.+.. ..+...+..+ .....+++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 68999999999998753 2344444444 3445677776
No 359
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=69.16 E-value=18 Score=48.99 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=64.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
.|-|-|.++|.+- ....++....|+|||.+.+.-|++|++..+ ....+|+|+-+. ....-...+.+..+.
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~-- 75 (715)
T TIGR01075 4 GLNDKQREAVAAP------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT-- 75 (715)
T ss_pred ccCHHHHHHHcCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc--
Confidence 4889999988632 234566667999999999999999997433 345688888765 444444445543321
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEccccc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAH 1132 (1953)
....+.|.|+..+... ..........+.|+|+..
T Consensus 76 ---------------------~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 113 (715)
T TIGR01075 76 ---------------------SARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDD 113 (715)
T ss_pred ---------------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 1125678888776533 111112233456778754
No 360
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=69.11 E-value=23 Score=39.82 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=65.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEE---echHHHHHHHHHHHHHCCCCeEEEEecch----hhHhHHHHHH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLII---VPNAVLVNWKSELHKWLPSVSCIYYVGAK----DQRSRLFSQE 1095 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIV---VP~SLL~QW~~Ef~KwaPslkVvvy~Gs~----deRk~l~~qe 1095 (1953)
.+.-..|.|||-.++++...... ...+++|| --..-. =...+.+.+|++.+..+.... ........
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~---~g~~v~~vQFlKg~~~~--gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~-- 78 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALG---HGYRVGVVQFLKGGWKY--GELKALERLPNIEIHRMGRGFFWTTENDEEDIA-- 78 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEEeCCCCcc--CHHHHHHhCCCcEEEECCCCCccCCCChHHHHH--
Confidence 34566799999999988876653 23355653 211000 012233344655555432210 00000000
Q ss_pred HhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC----chhHHHHHhhhcccceeEEecccCCCCC
Q 000169 1096 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQND 1164 (1953)
Q Consensus 1096 i~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN----~~SKlsraLk~L~a~~RLLLTGTPLQNn 1164 (1953)
.. ...+......+....+++||+||.=.+-+ ....+...|..-+...-++|||-=....
T Consensus 79 ~a----------~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~ 141 (159)
T cd00561 79 AA----------AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKE 141 (159)
T ss_pred HH----------HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 00 11122223445566899999999877643 2335555666556666899999644333
No 361
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=69.01 E-value=4.7 Score=45.86 Aligned_cols=41 Identities=32% Similarity=0.391 Sum_probs=25.7
Q ss_pred cCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCCC
Q 000169 1121 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNn 1164 (1953)
..++++||||+..+-. ..+.- +........++|-|=|.|-.
T Consensus 61 ~~~~~liiDE~~~~~~--g~l~~-l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPP--GYLLL-LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred CcCCEEEEeccccCCh--HHHHH-HHhhccCcceEEEECchhcc
Confidence 3589999999998742 11111 33333334677778887764
No 362
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=68.17 E-value=0.55 Score=48.91 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=41.0
Q ss_pred ccccccc-cCCCcc--ccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1730 RRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~--k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+..+.|| .+|+.. .+|+|++++++|++++. +-..|+.|+|.-..+--.|+..
T Consensus 20 ~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~l 74 (107)
T cd05497 20 HKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGT-IKKRLENNYYWSASECIQDFNT 74 (107)
T ss_pred CCcCccccCCCCcccccCCcHHHHHcCcccHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 4556788 777765 59999999999999987 7789999999877765555443
No 363
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=67.96 E-value=1.1e+02 Score=42.03 Aligned_cols=179 Identities=18% Similarity=0.153 Sum_probs=87.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-HHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-LHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E-f~Kwa--Psl 1076 (1953)
.|-+||...+.-++. .-+|++...-|||=--.++.++..+. .. ..|++|=+ ...|..+ |.... +.+
T Consensus 13 ~lL~Ye~qv~~~ll~----~d~~L~V~a~GLsl~~l~~~~l~~~s----~~-~sL~LvLN--~~~~ee~~f~s~lk~~~~ 81 (892)
T KOG0442|consen 13 ALLEYEQQVLLELLE----ADGNLLVLAPGLSLLRLVAELLILFS----PP-GSLVLVLN--TQEAEEEYFSSKLKEPLV 81 (892)
T ss_pred ccchhHHHHHHhhhc----ccCceEEecCCcCHHHHHHHHHHHhC----Cc-cceEEEec--CchhhHHHHHHhcCcCCC
Confidence 378999988877763 45567777789995544444433221 11 23444433 3335554 11111 122
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchhHHHHHhhhcccceeE
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRL 1154 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RL 1154 (1953)
.++.-.-+.+.|..+ ...-.|+++|--.|..|. ..+.-.+...|+++=||.+.+. +.-.-+++-|+.+.+.
T Consensus 82 t~~~s~ls~~~R~~~------Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~et-s~eaFIlRl~R~knk~ 154 (892)
T KOG0442|consen 82 TEDPSELSVNKRRSK------YLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISET-SQEAFILRLYRSKNKT 154 (892)
T ss_pred ccChhhcchhhhHHh------hhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhc-chhHHHHHHHHHhcCC
Confidence 222111222333222 122345555555554442 2333446789999999999763 4444455555444433
Q ss_pred ----EecccCCC--CCHHHHHHHHhhhcccccCChHHHHhhhcCCccc
Q 000169 1155 ----LLTGTPLQ--NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQK 1196 (1953)
Q Consensus 1155 ----LLTGTPLQ--NnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k 1196 (1953)
+.|--|-. ..+.-+--.+.+|.-.-.-.+..|...+..++..
T Consensus 155 gfIkAFsd~P~sf~~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~ 202 (892)
T KOG0442|consen 155 GFIKAFSDSPESFVSGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQ 202 (892)
T ss_pred cceeccccCchhhhccchHHHHHHHHHHhhhheeccchHhHHhhhhcc
Confidence 34444421 1233333444444332222345566555555443
No 364
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=67.93 E-value=24 Score=39.13 Aligned_cols=54 Identities=24% Similarity=0.160 Sum_probs=35.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechHHHHHHHHHHHHHC
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNAVLVNWKSELHKWL 1073 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~SLL~QW~~Ef~Kwa 1073 (1953)
.-++++.+.|+|||..++.++..+.... ...+++|+|.......++.+-+..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 3468889999999999999888877421 14568888887665556666665554
No 365
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=67.90 E-value=13 Score=46.69 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=27.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
..+.+|.-+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVQKF 205 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHhHhh
Confidence 3467899999999998887765432 2356666555555444
No 366
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=67.66 E-value=21 Score=44.88 Aligned_cols=50 Identities=28% Similarity=0.250 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHHHh-hc--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC
Q 000169 1000 TLRDYQIVGLQWMLSL-YN--NKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL-~~--n~lnGILADEMGLGKTIQAIALIa~Lle~kg~ 1049 (1953)
.-|+-|+.-+...+.- +. ...|.++.-.+|+|||.++--++..+.+....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~ 72 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSAN 72 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc
Confidence 3577777766544432 22 23467899999999999987777777654333
No 367
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=67.59 E-value=20 Score=39.06 Aligned_cols=45 Identities=33% Similarity=0.330 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLMEF 1046 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Lle~ 1046 (1953)
|+.|++-+.-++... ..+...+|.-+.|+|||...-.++..+...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 455655555444211 234456899999999998888777776653
No 368
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=67.51 E-value=16 Score=49.02 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=57.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH----HHHHHHHHCCCCeEEEEecchhhHhHHHHHHHh
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN----WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~Q----W~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~ 1097 (1953)
+++-+==-|||..+..+|+.++... ..-.+++++|.. +... -..-+++|+|...+-...|.. . .+ ...
T Consensus 258 VflVPRR~GKTwivv~iI~~ll~s~-~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-I---~i--~f~ 330 (738)
T PHA03368 258 VFLVPRRHGKTWFLVPLIALALATF-RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-I---SF--SFP 330 (738)
T ss_pred EEEecccCCchhhHHHHHHHHHHhC-CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-E---EE--Eec
Confidence 4444556899998887777666422 234688888854 3332 344456787764443333411 0 00 011
Q ss_pred hcc-ccEEEEeHHHHHhhhhcccccCccEEEcccccccCC
Q 000169 1098 ALK-FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1098 ~~~-fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN 1136 (1953)
.+. ..+.+.|- +....+....++++|||||+-++.
T Consensus 331 nG~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 331 DGSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred CCCccEEEEEec----cCCCCccCCcccEEEEechhhCCH
Confidence 111 13333311 233445566899999999999974
No 369
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=66.60 E-value=0.83 Score=46.87 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=41.5
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+.+.|| .+|+...+|+|+.++++|++++- +-..|+.|+|.-..+-..|+..
T Consensus 16 ~~s~~F~~pv~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~l 67 (97)
T cd05505 16 RFSWPFREPVTADEAEDYKKVITNPMDLQT-MQTKCSCGSYSSVQEFLDDMKL 67 (97)
T ss_pred CCcccccCCCChhhcccHHHHcCCcCCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 345678 78888999999999999999876 7789999999877666655554
No 370
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=66.31 E-value=19 Score=49.01 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=24.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~ 1063 (1953)
+.+.+|.-+.|+|||..+-++...+ ..+++.|....++.
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEIMS 250 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHHhc
Confidence 3466899999999997765554322 23555555444443
No 371
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=65.80 E-value=0.83 Score=47.09 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=41.8
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
..+.+| .+|+...+|+|+.++++|++++. +-..|+.|+|.-..+--.|+..
T Consensus 18 ~~s~~F~~PV~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~L 69 (99)
T cd05508 18 PGAEPFLKPVDLEQFPDYAQYVFKPMDLST-LEKNVRKKAYGSTDAFLADAKW 69 (99)
T ss_pred cCcchhcCCCChhhCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 346788 78888999999999999999987 8899999999876665555543
No 372
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=65.42 E-value=22 Score=44.13 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
..+.+|..+.|+|||..+-++...+ ..+++-++...++..|
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVRKY 196 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchHHHHHHh
Confidence 3457899999999998887665432 2345555544444333
No 373
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.31 E-value=7.4 Score=49.57 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (1953)
+-+|+-+.|+|||+.+.++..... -.+.-|.|.+|...|.-|.++.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~------atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESG------ATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhc------ceEeeccHHHhhhhccChHHHH
Confidence 458999999999999988876543 2567788999999998777553
No 374
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.22 E-value=77 Score=40.46 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=33.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKW 1072 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw 1072 (1953)
.+.+++.+.|+|||+.|=|+... ++.+.+=|-. .|+..|.-|=+|.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE-------c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE-------CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh-------hcCeEEEechhhhhhhhccchHHH
Confidence 35688999999999998887753 4566666654 4778898776653
No 375
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=64.93 E-value=19 Score=47.72 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=60.1
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-----HHHHHHHHHHHHCCCCeEEEEecchhhHhH
Q 000169 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-----VLVNWKSELHKWLPSVSCIYYVGAKDQRSR 1090 (1953)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-----LL~QW~~Ef~KwaPslkVvvy~Gs~deRk~ 1090 (1953)
+.++-.+.|. +=--|||+..+.+|+.++..-. .=.+..|+--. +.......+.+|+|.-.++...++.-.
T Consensus 200 FKQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~-gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~--- 274 (668)
T PHA03372 200 FKQKATVFLV-PRRHGKTWFIIPIISFLLKNII-GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS--- 274 (668)
T ss_pred hhccceEEEe-cccCCceehHHHHHHHHHHhhc-CceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE---
Confidence 3334444443 3467999999999988886222 22567777533 333445567899997665433221100
Q ss_pred HHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC
Q 000169 1091 LFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1091 l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN 1136 (1953)
+ .....+..++..| ..+...+..-.|++++|||||-++-
T Consensus 275 -~--s~pg~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 275 -I--DHRGAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred -E--ecCCCcceeeehh----hccCccccCCCCCEEEEehhhccCH
Confidence 0 0001111122222 0123345566899999999999973
No 376
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=64.76 E-value=36 Score=44.00 Aligned_cols=131 Identities=17% Similarity=0.122 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhc-CC----CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCC-eEEEechHH-HHHHHHHHHHH---
Q 000169 1003 DYQIVGLQWMLSLYN-NK----LNGILADEMGLGKTVQVMALIAYLMEFKGNYGP-HLIIVPNAV-LVNWKSELHKW--- 1072 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~-n~----lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP-~LIVVP~SL-L~QW~~Ef~Kw--- 1072 (1953)
|+|.-.+..+.-... .+ ..++|.-.=|-|||..+.++.+|.+-..+..++ ++++++..- ...--+++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 567766655553311 11 124666678999999988887776654455454 556666542 22222333333
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHH----HHHhhhhcccccCccEEEcccccccCCchhHHHHHhh
Q 000169 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYE----FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (1953)
Q Consensus 1073 aPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYE----sL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk 1146 (1953)
.|.+...... .+ .....-.|.....+ .+..+...+...+..++|+||.|.+++. .++.++.
T Consensus 81 ~~~l~~~~~~-------~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~ 145 (477)
T PF03354_consen 81 SPELRKRKKP-------KI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDALE 145 (477)
T ss_pred Chhhccchhh-------hh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH--HHHHHHH
Confidence 2332211100 00 00001111111101 1123445566678999999999999863 3444444
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=64.55 E-value=35 Score=37.51 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=19.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.++....|+|||..+..++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 367789999999999888877664
No 378
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=64.37 E-value=33 Score=42.21 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|..++..+...+..+. .-|+..+.|+||+..+.+++.+++.
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4555666666554442 3488999999999999999988875
No 379
>PRK11823 DNA repair protein RadA; Provisional
Probab=64.32 E-value=17 Score=46.79 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000169 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (1953)
Q Consensus 1006 leGL~WLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (1953)
..+++.++. -+..+.-.+|.-++|+|||..++.++..+.. ..+++|.|.-.....++.....+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccccHHHHHHHHHH
Confidence 455666663 1222223478999999999988888776552 23578888865555555444443
No 380
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=64.24 E-value=15 Score=49.79 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=68.2
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEE
Q 000169 1324 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402 (1953)
Q Consensus 1324 i~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLL 1402 (1953)
+..|||.+++..++.+..+.|+.|||-..-.....-+.+.|+.+ |.++..+|++.+..+|.....+...+... ++|
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~---vVI 301 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR---VVI 301 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce---EEE
Confidence 46799999999999999999999999998888877777777665 88999999999999999999988875554 455
Q ss_pred ecccc
Q 000169 1403 SIRAA 1407 (1953)
Q Consensus 1403 STrAG 1407 (1953)
.|+.+
T Consensus 302 GtRSA 306 (730)
T COG1198 302 GTRSA 306 (730)
T ss_pred Eechh
Confidence 55554
No 381
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=64.03 E-value=27 Score=43.22 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lle 1045 (1953)
++|++......+...+..-.++ |+..+.|+|||..+..+...++-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 5788888777777665443344 68999999999999888877764
No 382
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=64.02 E-value=33 Score=40.40 Aligned_cols=40 Identities=20% Similarity=0.002 Sum_probs=28.9
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000169 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (1953)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (1953)
..+.-.+|+..+|+|||..++.++..+.... ..++|++.-
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEc
Confidence 3344568999999999999988887766421 346777774
No 383
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=63.63 E-value=19 Score=48.82 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=63.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
.|-|-|.++|.+- ....++-...|+|||.+.+.-|++|++..+ ....+|+|+-+. ....-...+.+..+.
T Consensus 9 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~-- 80 (721)
T PRK11773 9 SLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT-- 80 (721)
T ss_pred hcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc--
Confidence 4889999998632 234455566999999999999999997433 334589998765 333344444443221
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh----hcccccCccEEEccccc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~----s~L~kikWd~VIIDEAH 1132 (1953)
....+.|.|+..+.... .....+.-.+.|+|+..
T Consensus 81 ---------------------~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 118 (721)
T PRK11773 81 ---------------------SQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDD 118 (721)
T ss_pred ---------------------CCCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 11246788888765431 11112233456788754
No 384
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=63.40 E-value=18 Score=40.90 Aligned_cols=41 Identities=32% Similarity=0.295 Sum_probs=28.7
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
.++.|.+|...+|+|||..+++++..++. ++ .+++++.-..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g--~~v~f~~~~~ 85 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-KG--YSVLFITASD 85 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT----EEEEEHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CC--cceeEeecCc
Confidence 45677899999999999999999988876 22 3566665333
No 385
>CHL00176 ftsH cell division protein; Validated
Probab=63.21 E-value=42 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa 1041 (1953)
..+.||.-+.|+|||..+=++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999988877654
No 386
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.90 E-value=76 Score=41.60 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=19.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHh
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFK 1047 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~k 1047 (1953)
+|.-.+|.|||.++..|..++....
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~~~ 284 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMRH 284 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhc
Confidence 5788999999988877776665433
No 387
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=62.57 E-value=46 Score=49.39 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=40.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLV 1063 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~ 1063 (1953)
.|-+-|.+++..++.- ...-.+|.--.|+|||.+.-+++..+..... ....++.++|+.-..
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 6889999999888751 1234577888999999877555544332111 223567788987443
No 388
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=61.97 E-value=39 Score=49.60 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=40.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAVLV 1063 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SLL~ 1063 (1953)
.|-+-|.+++..++.- ...-.+|.-..|+|||.+.-+++..+... ......++.++|+.-..
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 6889999999877652 12346788889999998865554433221 12223577788987543
No 389
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=61.80 E-value=36 Score=47.66 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=70.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
..+||..+....+-.....+.+|+|.+..+..+.-..+.|.. .++++..++|.++..++.++++.+..+..+ |+
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d--IV 558 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID--IL 558 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce--EE
Confidence 357898776555444455788999999999888776665554 467888999999999999999999865444 44
Q ss_pred EEeccccccccCCccCCeEEEc
Q 000169 1401 LLSIRAAGRGLNLQSADTVIIY 1422 (1953)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIif 1422 (1953)
+.+.......+.+....+||+=
T Consensus 559 IGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred EchHHHhhCCCCcccCCEEEee
Confidence 4444455556777888887773
No 390
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=61.69 E-value=1.1 Score=46.04 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=42.7
Q ss_pred ccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+..+.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|.-..+-..|+..
T Consensus 16 ~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~l 68 (98)
T cd05512 16 KDTAEIFSEPVDLSEVPDYLDHIKQPMDFST-MRKKLESQRYRTLEDFEADFNL 68 (98)
T ss_pred CCCchhhcCCCCccccCCHHHHhcCCcCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 3445677 77788899999999999999987 7789999999887777766654
No 391
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=61.56 E-value=0.87 Score=46.46 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=40.2
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
.+-+| .+++...+|+|+.++++|++++. +-..|+.|+|--..+-..|+.+
T Consensus 17 ~~~~F~~pv~~~~~p~Y~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l 67 (97)
T cd05503 17 DAWPFLEPVNTKLVPGYRKIIKKPMDFST-IREKLESGQYKTLEEFAEDVRL 67 (97)
T ss_pred CchhhcCCCCccccCCHHHHhCCCCCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 45677 77788899999999999999987 7899999999766665555544
No 392
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=61.43 E-value=20 Score=42.64 Aligned_cols=49 Identities=20% Similarity=0.107 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
|+....+..++.....+...+|..+.|+|||..+.++...+ ..+++.|+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 55566666777767778888999999999998887765422 24666664
No 393
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=61.32 E-value=12 Score=47.32 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=28.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
+.+.+|.-+.|+|||..+-++...+ ..+++.|.+..++..|.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKYL 220 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHhc
Confidence 4567999999999998886665432 23566666655555543
No 394
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=60.90 E-value=39 Score=39.20 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=31.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (1953)
-.+++.+.|+|||..+..++..... ...++++|.=..........+..
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~~~~~~~~~~~ 74 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENTSKSYLKQMES 74 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCCHHHHHHHHHH
Confidence 3478899999999999888766543 24577777743333344443333
No 395
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=60.78 E-value=5.1 Score=39.48 Aligned_cols=22 Identities=18% Similarity=0.554 Sum_probs=17.9
Q ss_pred cchhccccccchHHHhhchHHH
Q 000169 1574 WIEEMTRYDQVPKWLRASTKEV 1595 (1953)
Q Consensus 1574 ~~~~l~~~~elP~~l~~~~~e~ 1595 (1953)
...|||..+|||+||..+...+
T Consensus 16 ~p~RLm~e~ELPe~~~~d~~~~ 37 (74)
T PF14619_consen 16 YPSRLMEESELPEWYREDIEEE 37 (74)
T ss_pred CCccccchhhchHHHHhcchhh
Confidence 4569999999999998765554
No 396
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=60.56 E-value=44 Score=39.27 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=27.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
+.-.+|..+.|+|||..++.++..+.. . ..+++.|+..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~--g~~~~yi~~e 61 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-N--GYSVSYVSTQ 61 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-C--CCcEEEEeCC
Confidence 444688999999999998888877653 2 2466777743
No 397
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=60.55 E-value=32 Score=41.61 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=25.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
...+|+..+|+|||.++..++.++....+. .++.||.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~ 231 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALIT 231 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEE
Confidence 345678899999999998888877643222 2455554
No 398
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=60.33 E-value=0.82 Score=46.73 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=41.6
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
.+.+| .+|+...+|+|+.++++|++++- +...|+.|+|....+-..|+..
T Consensus 18 ~a~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~l 68 (101)
T cd05509 18 SAWPFLEPVDKEEAPDYYDVIKKPMDLST-MEEKLENGYYVTLEEFVADLKL 68 (101)
T ss_pred CchhhcCCCChhhcCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 45677 78888899999999999999876 7789999999877776666654
No 399
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.30 E-value=86 Score=42.22 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=25.7
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+.+|||||+|.|... ...+.+.|.......+++|+.|-
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 6889999999999431 22344445554555677777763
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.23 E-value=1.4e+02 Score=38.53 Aligned_cols=79 Identities=14% Similarity=0.051 Sum_probs=46.3
Q ss_pred CccEEEcccccccCCchhHHHHHhhhc-----ccceeEEecccCCCCCHHHHHHHHhhhccc-----------ccCChHH
Q 000169 1122 DWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNLLLPE-----------VFDNRKA 1185 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~SKlsraLk~L-----~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~-----------iF~S~k~ 1185 (1953)
.+++|+||.+=+..+ ...+...+..+ .....|.|++|--.+.+.++...+..+... .+|..-.
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~ 347 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALD 347 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHH
Confidence 568889998644332 22233334433 234568899998777788877777655442 2334445
Q ss_pred HHhhhcCCcccCCCCC
Q 000169 1186 FHDWFSQPFQKEGPTH 1201 (1953)
Q Consensus 1186 F~e~F~kPf~k~g~~~ 1201 (1953)
+...+..|+...+...
T Consensus 348 ~~~~~~lPi~yvt~Gq 363 (420)
T PRK14721 348 AVIRRKLVLHYVTNGQ 363 (420)
T ss_pred HHHHhCCCEEEEECCC
Confidence 5555667776654443
No 401
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=59.85 E-value=3.1e+02 Score=35.54 Aligned_cols=133 Identities=21% Similarity=0.241 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhh
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA 1098 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~ 1098 (1953)
+....|..+||.|||-+..-|.+.+.-..+...-.||-+-+-=+. -.+.|..++ .+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG-A~EQLk~Ya---------------------~im~ 260 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG-AVEQLKTYA---------------------DIMG 260 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh-HHHHHHHHH---------------------HHhC
Confidence 444578899999999887767665552233332333333221000 111121111 1111
Q ss_pred ccccEEEEeHHHHHhhhhcccccCccEEEcccccc-cCCchhHHHHHhhhc-----ccceeEEecccCCCCCHHHHHHHH
Q 000169 1099 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQR-MKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLL 1172 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHr-LKN~~SKlsraLk~L-----~a~~RLLLTGTPLQNnL~ELwSLL 1172 (1953)
..+ .++.+..-|......|. ++|+|.||=+-+ -++. . ....|..| ....-|.|++|--..++.+++..+
T Consensus 261 vp~-~vv~~~~el~~ai~~l~--~~d~ILVDTaGrs~~D~-~-~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 261 VPL-EVVYSPKELAEAIEALR--DCDVILVDTAGRSQYDK-E-KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred Cce-EEecCHHHHHHHHHHhh--cCCEEEEeCCCCCccCH-H-HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 112 22334444433333333 458999996544 3331 1 12222222 344578999999888999999888
Q ss_pred hhhccc
Q 000169 1173 NLLLPE 1178 (1953)
Q Consensus 1173 nFLlP~ 1178 (1953)
.++...
T Consensus 336 ~~~~i~ 341 (407)
T COG1419 336 SLFPID 341 (407)
T ss_pred ccCCcc
Confidence 877553
No 402
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=59.83 E-value=1.3 Score=46.12 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=44.3
Q ss_pred cccccc-cCCCcc--ccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1731 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~--k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
..+.+| .+|+.. .+|+|+.++++|++++- +-..|+.|+|....+-.-|+.. ++|+||
T Consensus 20 ~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 89 (108)
T cd05495 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLST-IRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRVY 89 (108)
T ss_pred cccchhcCCCCccccCCCcHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 345677 666655 69999999999999876 7789999999987776666654 566666
No 403
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=59.78 E-value=13 Score=50.50 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=29.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
..+.+|.-+.|+|||..+-++...+ ..+++.|-+..++..|.-
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKWVG 529 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcccC
Confidence 3456889999999998887765432 236677767666666543
No 404
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=59.24 E-value=4e+02 Score=37.05 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=17.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~L 1043 (1953)
..+|.-..|+|||..+-++...+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999998776665443
No 405
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=59.23 E-value=2.7e+02 Score=35.56 Aligned_cols=53 Identities=17% Similarity=0.040 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
..+|+.++.-+..+.=.+|+..+|.|||.-++.++....... ..++|++...-
T Consensus 182 ~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm 234 (434)
T TIGR00665 182 FTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEM 234 (434)
T ss_pred chhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcC
Confidence 344554443233333358899999999999988887765422 24788887543
No 406
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=59.19 E-value=28 Score=40.92 Aligned_cols=38 Identities=34% Similarity=0.481 Sum_probs=26.6
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHH
Q 000169 1028 MGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSE 1068 (1953)
Q Consensus 1028 MGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~E 1068 (1953)
=|.|||..++.+..++.. ++ .+++||- |...+..|...
T Consensus 11 GGvGKTT~a~nLA~~la~-~G--~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 11 GGAGKTTALMGLCAALAS-DG--KRVALFEADENRPLTRWKEN 50 (231)
T ss_pred CCccHHHHHHHHHHHHHh-CC--CcEEEEeCCCCCCHHHHHHh
Confidence 389999999988887764 32 3555554 66667788653
No 407
>PRK10867 signal recognition particle protein; Provisional
Probab=58.98 E-value=50 Score=42.58 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=24.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
.+++-..|+|||.+++.++.++... .. .++++|+
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~-~G-~kV~lV~ 136 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK-KK-KKVLLVA 136 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh-cC-CcEEEEE
Confidence 4688999999999999888887653 12 3455554
No 408
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=58.79 E-value=23 Score=42.24 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHH
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQV 1036 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQA 1036 (1953)
+++++|+.+- .+..++|.-+.|+|||..+
T Consensus 5 ~~id~~~~i~-~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 5 RVVDLFAPIG-KGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred hheeeecccC-CCCEEEEECCCCCCHHHHH
Confidence 3455555433 3445667777999999544
No 409
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=58.27 E-value=62 Score=37.28 Aligned_cols=47 Identities=15% Similarity=0.062 Sum_probs=32.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (1953)
.+|+.+.|+|||..++.++...+. ...++++|.-.....+-...+..
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~---~g~~~~y~s~e~~~~~l~~~~~~ 65 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLK---NGEKAMYISLEEREERILGYAKS 65 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCHHHHHHHHHH
Confidence 478889999999999888766553 24578888865444444444443
No 410
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=58.10 E-value=32 Score=40.13 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=34.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHH---------HhCCCCCeEEEe---chHHHHHHHHHHHHHC
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLME---------FKGNYGPHLIIV---PNAVLVNWKSELHKWL 1073 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle---------~kg~~GP~LIVV---P~SLL~QW~~Ef~Kwa 1073 (1953)
-++|+-+-|+|||..++.++..... .....+++|+++ |...+..-...+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 3689999999999999888765431 112456788888 4455555444444433
No 411
>PTZ00293 thymidine kinase; Provisional
Probab=57.71 E-value=30 Score=40.57 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=23.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
++.-.||+|||...|-.+.... ....+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~---~ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFT---YSEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHH---HcCCceEEEEecc
Confidence 5788999999966655544332 2345788888753
No 412
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=57.66 E-value=66 Score=39.85 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
+|.-..|.|||.++..+..++.. ..+.++|+.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~Li~ 149 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKA---QGKKVLLAA 149 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHh---cCCeEEEEe
Confidence 56679999999988887776653 234666665
No 413
>PRK05748 replicative DNA helicase; Provisional
Probab=57.63 E-value=47 Score=42.64 Aligned_cols=62 Identities=15% Similarity=-0.001 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
..+|+.+..-+..+.-.+|+..+|.|||.-++.++...... ...+++++...-...++...+
T Consensus 190 ~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 190 FTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred hHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeCCCCHHHHHHHH
Confidence 44555555434444445899999999999998888765432 234788887544444444443
No 414
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=57.56 E-value=13 Score=46.97 Aligned_cols=17 Identities=35% Similarity=0.264 Sum_probs=14.1
Q ss_pred CeEEEcCCCchHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVM 1037 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAI 1037 (1953)
+-||.-+.|+|||-.+-
T Consensus 50 SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 50 SMILWGPPGTGKTTLAR 66 (436)
T ss_pred eeEEECCCCCCHHHHHH
Confidence 46999999999996653
No 415
>PRK11054 helD DNA helicase IV; Provisional
Probab=57.47 E-value=24 Score=47.75 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=47.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHHHHHH-HHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVNWKSE-LHK 1071 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~QW~~E-f~K 1071 (1953)
.|-+.|.++|..- .+ +.++....|+|||.+.++-+.||+.... ....+|+|+.+....++..+ +..
T Consensus 196 ~L~~~Q~~av~~~-----~~-~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 196 PLNPSQARAVVNG-----ED-SLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCHHHHHHHhCC-----CC-CeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 6899999998532 12 3455556999999999999999996433 23478999998876665444 443
No 416
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.04 E-value=49 Score=41.35 Aligned_cols=122 Identities=20% Similarity=0.321 Sum_probs=62.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecc--hhhHhHHHHHHHhhcc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQEVAALK 1100 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs--~deRk~l~~qei~~~~ 1100 (1953)
++.--.|+|||-+..-+..++.. ...++||.+--.--.--.+.+.-|...+.+-++.+. .+.-.
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa----------- 208 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAA----------- 208 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH-----------
Confidence 56678899999776666655543 223455554322222234445555533333333321 11100
Q ss_pred ccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchh------HHHHHhhhc--ccceeEEe--cccCCCCCHHH
Q 000169 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES------VLARDLDRY--RCQRRLLL--TGTPLQNDLKE 1167 (1953)
Q Consensus 1101 fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~S------KlsraLk~L--~a~~RLLL--TGTPLQNnL~E 1167 (1953)
.-|+.+ ..-...++|+||||=|-|+-|... ++.+.+... .+++.++| -||-=||.+.-
T Consensus 209 -----VafDAi----~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 209 -----VAFDAI----QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred -----HHHHHH----HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 011122 222345789999999999976443 333444333 23444443 57776776544
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=56.66 E-value=49 Score=42.61 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=20.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
-.+++-..|+|||.++..++.++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~ 125 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKK 125 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3478999999999999888888753
No 418
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=56.28 E-value=1.9 Score=44.74 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=42.3
Q ss_pred ccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
...+.+| .+|+...+|+|+.++++|++++- +-.+|+.|+|.-..+-..|+..
T Consensus 18 ~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~l 70 (104)
T cd05507 18 HRYASVFLKPVTEDIAPGYHSVVYRPMDLST-IKKNIENGTIRSTAEFQRDVLL 70 (104)
T ss_pred CCCCHhhcCCCCccccCCHHHHhCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 3456778 77778899999999999999987 7799999999877766666543
No 419
>PRK06904 replicative DNA helicase; Validated
Probab=55.85 E-value=1e+02 Score=40.34 Aligned_cols=128 Identities=16% Similarity=0.074 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE-EEec-
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI-YYVG- 1083 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVv-vy~G- 1083 (1953)
...|+.+..-+..+.=.|||.-+|.|||.-++.++...... ...++|++...--..++...+......+... +..|
T Consensus 208 ~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~ 285 (472)
T PRK06904 208 FTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQ 285 (472)
T ss_pred hHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCC
Confidence 34455554434434445899999999999887777655432 2358888887655556555543332222111 1122
Q ss_pred --chhhHhHHHHHHHhh-ccccEEEE-----eHHHHHhhhhcc-cc-cCccEEEcccccccC
Q 000169 1084 --AKDQRSRLFSQEVAA-LKFNVLVT-----TYEFIMYDRSKL-SK-VDWKYIIIDEAQRMK 1135 (1953)
Q Consensus 1084 --s~deRk~l~~qei~~-~~fdVVIT-----TYEsL~kd~s~L-~k-ikWd~VIIDEAHrLK 1135 (1953)
+.++..++....... ...++.|. |...+......+ .. ...++||||=-|.|.
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 122222221110111 12335553 344444332222 22 257899999888875
No 420
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.81 E-value=95 Score=40.17 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=22.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
+|+-..|+|||-++..+..++.. . .. +++||+
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~-~-G~-kV~lV~ 135 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQR-K-GF-KPCLVC 135 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-C-CC-CEEEEc
Confidence 57888999999999888877653 2 22 555555
No 421
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.77 E-value=25 Score=44.41 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=52.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhH-hHHHHHHHhhccc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQR-SRLFSQEVAALKF 1101 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deR-k~l~~qei~~~~f 1101 (1953)
+++-=-|.|||-++.-+..|+. +..+++.||.+-+- -.--.+.+..|+-...|-+|....+.. ..+
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~k--kkG~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~ygsyte~dpv~i---------- 171 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYK--KKGYKVALVCADTF-RAGAFDQLKQNATKARVPFYGSYTEADPVKI---------- 171 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHH--hcCCceeEEeeccc-ccchHHHHHHHhHhhCCeeEecccccchHHH----------
Confidence 4566689999988877776654 44555655555432 111223344444334444443211111 011
Q ss_pred cEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHH
Q 000169 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 1141 (1953)
Q Consensus 1102 dVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKl 1141 (1953)
...-...+.+-+|++||+|=+-|.+-..+..
T Consensus 172 ---------a~egv~~fKke~fdvIIvDTSGRh~qe~sLf 202 (483)
T KOG0780|consen 172 ---------ASEGVDRFKKENFDVIIVDTSGRHKQEASLF 202 (483)
T ss_pred ---------HHHHHHHHHhcCCcEEEEeCCCchhhhHHHH
Confidence 1112345667789999999888876544443
No 422
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=55.51 E-value=1.4 Score=45.16 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=41.7
Q ss_pred CCccccccc-cCCCc--cccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1728 NSRRLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~--~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+.+.++.+| .++.. ..+|+|+.++.+|++++. +-..|+.|+|.-..|-..|+..
T Consensus 16 ~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~-I~~kl~~~~Y~s~~ef~~D~~l 72 (102)
T cd05498 16 KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLST-IKKKLDNREYADAQEFAADVRL 72 (102)
T ss_pred CCccccCcccCcCCccccCCCcHHHHccCCCcHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 446777888 55544 469999999999999877 7789999999876666666543
No 423
>PRK08760 replicative DNA helicase; Provisional
Probab=55.01 E-value=72 Score=41.60 Aligned_cols=126 Identities=16% Similarity=0.102 Sum_probs=65.9
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE-EEecc--
Q 000169 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI-YYVGA-- 1084 (1953)
Q Consensus 1008 GL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVv-vy~Gs-- 1084 (1953)
.|+.+..-+..+.=.|||..+|.|||..++.++....... ..+++++...-...+|...+......+... +..|.
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~ 295 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALE 295 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCC
Confidence 3444443333333358999999999999988887665322 247888887666667776665443222211 11221
Q ss_pred hhhHhHHHHHHHhhccccEEEE-----eHHHHHhhhhcc-cccCccEEEcccccccC
Q 000169 1085 KDQRSRLFSQEVAALKFNVLVT-----TYEFIMYDRSKL-SKVDWKYIIIDEAQRMK 1135 (1953)
Q Consensus 1085 ~deRk~l~~qei~~~~fdVVIT-----TYEsL~kd~s~L-~kikWd~VIIDEAHrLK 1135 (1953)
..+..++...........++|. |.+.+......+ .....++||||=-+.|.
T Consensus 296 ~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcC
Confidence 1111111111111223445544 233333222222 23467899999777774
No 424
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.99 E-value=82 Score=39.13 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1005 QleGL~WLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|...+..+...+.++ .+-||..+.|+|||..+-++...+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444455444333 2457999999999988877755443
No 425
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=54.75 E-value=25 Score=45.23 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=26.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (1953)
..+.||.-+.|+|||..+=++...+ ..+++-|....++..
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el------~~~fi~V~~seL~~k 256 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANET------SATFLRVVGSELIQK 256 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh------CCCEEEEecchhhhh
Confidence 4567899999999998886665432 235565655555443
No 426
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=54.56 E-value=1.2 Score=46.80 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=41.2
Q ss_pred cccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1733 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1733 ~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+-+| .+|+...+|+|+.++..|++++- +...|+.|+|....+-..|+..
T Consensus 21 ~~~F~~pv~~~~~pdY~~vI~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~l 70 (112)
T cd05528 21 FNAFTKPVDEEEVPDYYEIIKQPMDLQT-ILQKLDTHQYLTAKDFLKDIDL 70 (112)
T ss_pred chhhcCCCCccccCcHHHHHcCCCCHHH-HHHHHcCCCcCCHHHHHHHHHH
Confidence 3567 88888999999999999999865 7789999999987777777655
No 427
>smart00297 BROMO bromo domain.
Probab=54.53 E-value=1.5 Score=44.58 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=43.4
Q ss_pred ccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+..+.+| .+|+...+|+|+.++..|.+++. +-..|+.|+|....+-..|+.+
T Consensus 22 ~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~-I~~kl~~~~Y~s~~ef~~D~~l 74 (107)
T smart00297 22 HRLSWPFLKPVDRKEAPDYYDIIKKPMDLST-IKKKLENGKYSSVEEFVADVQL 74 (107)
T ss_pred CccchhhccCCChhhccCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 4677888 88899999999999999999977 7899999999776666656554
No 428
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=54.53 E-value=23 Score=44.26 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=60.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH--HHHHHHHHHHHHCCCCeE-EEEecchhhHhHHHHHHHhhc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA--VLVNWKSELHKWLPSVSC-IYYVGAKDQRSRLFSQEVAAL 1099 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S--LL~QW~~Ef~KwaPslkV-vvy~Gs~deRk~l~~qei~~~ 1099 (1953)
|+.-..|+|||..++..+...+........+||+-|.. +-.+-..+|...++.+.+ ..+....... .+ .....
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-~i---~~~~~ 80 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-EI---KILNT 80 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc-EE---EecCC
Confidence 56677999999888765554443221334666676743 333333333332221110 0111100000 00 00000
Q ss_pred cccEEEEeHHHHHhhhhccccc-CccEEEcccccccCCchhHHHHHhhhccc---ceeEEecccCCC
Q 000169 1100 KFNVLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQRMKDRESVLARDLDRYRC---QRRLLLTGTPLQ 1162 (1953)
Q Consensus 1100 ~fdVVITTYEsL~kd~s~L~ki-kWd~VIIDEAHrLKN~~SKlsraLk~L~a---~~RLLLTGTPLQ 1162 (1953)
.-.|++..- ..+...+... .+++++||||..+. ...+...+.+++. ..++++|.||-.
T Consensus 81 g~~i~f~g~---~d~~~~ik~~~~~~~~~idEa~~~~--~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIFKGL---NDKPNKLKSGAGIAIIWFEEASQLT--FEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEeecc---cCChhHhhCcceeeeehhhhhhhcC--HHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 112222222 0112233333 35899999999984 2333444444432 235999999943
No 429
>PF12846 AAA_10: AAA-like domain
Probab=54.29 E-value=35 Score=39.91 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=30.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
.+.+++-.+|+|||..+..++..++. .+ ..++|+=|..-...|.+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~-~g--~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIR-RG--PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH-cC--CCEEEEcCCchHHHHHHh
Confidence 46788899999999888877766664 22 456666566444444333
No 430
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=54.21 E-value=1.5 Score=45.07 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=42.1
Q ss_pred ccccccc-cCCCcc--ccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1730 RRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~--k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+.++.|| .+|+.. .+|+|+.++..|.+++. +-..|+.|+|....+-..|+..
T Consensus 18 ~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~-I~~kl~~~~Y~s~~ef~~D~~l 72 (102)
T cd05499 18 SAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGT-ISKKLQNGQYQSAKEFERDVRL 72 (102)
T ss_pred CcccchhcCCCCccccCCCCHHHHhcCCCCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 4567888 666666 99999999999999876 7789999999877776666554
No 431
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=54.21 E-value=34 Score=46.78 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=17.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa 1041 (1953)
.+.||.-+.|+|||..+-++..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999977755543
No 432
>CHL00206 ycf2 Ycf2; Provisional
Probab=54.15 E-value=22 Score=52.40 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=30.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
..|.+|..++|+|||+.|=+++... .-|++-|....++..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcc
Confidence 4567899999999998887776532 3366666666677666
No 433
>PRK10689 transcription-repair coupling factor; Provisional
Probab=54.13 E-value=61 Score=46.55 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=68.2
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
..+||..+....+......+.+|||.+..+..+.-+...|.. .++.+..++|..+..++..+++....+..+ |+
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d--IV 707 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID--IL 707 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC--EE
Confidence 357898765554444456788999999999887766666553 356777899999999999999988754444 55
Q ss_pred EEeccccccccCCccCCeEEE
Q 000169 1401 LLSIRAAGRGLNLQSADTVII 1421 (1953)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIi 1421 (1953)
+.+.......+++.....||+
T Consensus 708 VgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEE
Confidence 555455555667777888776
No 434
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=53.97 E-value=31 Score=44.80 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=18.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa 1041 (1953)
..|.||.-+.|+|||..+-++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999988876654
No 435
>PRK09165 replicative DNA helicase; Provisional
Probab=53.67 E-value=1.1e+02 Score=40.15 Aligned_cols=128 Identities=13% Similarity=0.053 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------------CCCCeEEEechHHHHHHHHHHHHHCCC
Q 000169 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------------NYGPHLIIVPNAVLVNWKSELHKWLPS 1075 (1953)
Q Consensus 1008 GL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------------~~GP~LIVVP~SLL~QW~~Ef~KwaPs 1075 (1953)
.|+-++.-+..+.=.|||..+|.|||.-++.++........ ...++|++...-...++...+.....+
T Consensus 206 ~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~ 285 (497)
T PRK09165 206 DLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSE 285 (497)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence 44555433333333589999999999999888776653221 235788887654444544443332222
Q ss_pred CeEE-EEecc--hhhHhHHHHHHHhhccccEEEE-----eHHHHHhhhh-cccccCccEEEcccccccC
Q 000169 1076 VSCI-YYVGA--KDQRSRLFSQEVAALKFNVLVT-----TYEFIMYDRS-KLSKVDWKYIIIDEAQRMK 1135 (1953)
Q Consensus 1076 lkVv-vy~Gs--~deRk~l~~qei~~~~fdVVIT-----TYEsL~kd~s-~L~kikWd~VIIDEAHrLK 1135 (1953)
+... +..|. ..+..++..........++.|. |.+.+..... .......++||||=-|.|.
T Consensus 286 v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 286 ISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcc
Confidence 2111 11221 1222222221122233445553 3344432222 2223468899999888775
No 436
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=53.62 E-value=71 Score=48.38 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLV 1063 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~ 1063 (1953)
..|-+-|..++..++.. ...-.+|--.-|+|||.+..+++..+.+.. .....++.++|+.-..
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa 1081 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV 1081 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 36899999999887651 123346678899999988755443332211 1223577778986443
No 437
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=53.38 E-value=23 Score=46.89 Aligned_cols=45 Identities=29% Similarity=0.451 Sum_probs=35.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhC---CCCCeEEEechHHHHHHHH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKG---NYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg---~~GP~LIVVP~SLL~QW~~ 1067 (1953)
|+-...|+|||-+++.=++||+.... ..+++||+.|+.+......
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 56688999999999998888886433 3467999999998766543
No 438
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=53.33 E-value=36 Score=43.52 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1008 GL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
+|+++.-.- .+..++|..+-|+|||..+-.++..+.
T Consensus 159 vID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 159 IIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 344444322 344456666799999976666554443
No 439
>PHA02244 ATPase-like protein
Probab=52.93 E-value=75 Score=40.44 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=22.3
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHH
Q 000169 1014 SLYNNKLNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
.+...+.+.+|..++|+|||..+-++...
T Consensus 114 r~l~~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 33445788999999999999888666543
No 440
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=52.55 E-value=3.6e+02 Score=37.92 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=9.2
Q ss_pred hhchHHHHHHHHHH
Q 000169 756 LRLLDLQSRLRDEV 769 (1953)
Q Consensus 756 l~ll~~Q~~lr~~~ 769 (1953)
--++.-|+++|.-.
T Consensus 1437 t~~i~~Q~r~r~l~ 1450 (1629)
T KOG1892|consen 1437 TMTIDEQRRYRELL 1450 (1629)
T ss_pred chhhHHHHHHhhcc
Confidence 45677788877643
No 441
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.47 E-value=68 Score=44.13 Aligned_cols=152 Identities=15% Similarity=0.118 Sum_probs=76.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hH---HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHh
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NA---VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~S---LL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~ 1097 (1953)
..|...+|.|||-++.-+...+....+. ..+.||.- .. .+.||..-... . ++.+.
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~-~-gvpv~------------------ 246 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRI-L-GVPVH------------------ 246 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHh-C-CCCcc------------------
Confidence 3588999999998877666655433332 24444442 21 34444322211 1 11111
Q ss_pred hccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-----ccceeEEecccCCCCCHHHHHHHH
Q 000169 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLL 1172 (1953)
Q Consensus 1098 ~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-----~a~~RLLLTGTPLQNnL~ELwSLL 1172 (1953)
++.+...+......+. .+++||||=+=+.-+.. .+...+..+ .....|.|++|--...+.++..-+
T Consensus 247 ------~~~~~~~l~~al~~~~--~~D~VLIDTAGRs~~d~-~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 247 ------AVKDAADLRFALAALG--DKHLVLIDTVGMSQRDR-NVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred ------ccCCHHHHHHHHHHhc--CCCEEEEeCCCCCccCH-HHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 1123333322222232 45889999887664322 233333332 234567788886555566665555
Q ss_pred hhh---ccc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000169 1173 NLL---LPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1203 (1953)
Q Consensus 1173 nFL---lP~-----------iF~S~k~F~e~F~kPf~k~g~~~~~ 1203 (1953)
+.+ .+. .++..-++...+..|+...+...+.
T Consensus 318 ~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lPI~yit~GQ~V 362 (767)
T PRK14723 318 RHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKV 362 (767)
T ss_pred hhcccCCCCEEEEeccCCCCCccHHHHHHHHHCCCeEEEecCCCC
Confidence 432 111 1233445556667777766554443
No 442
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=52.42 E-value=33 Score=42.55 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
.+.+.++|..-|..++ ..+.|.|++-.||+|||-..-+++.++.
T Consensus 126 ~g~~~~~~~~~L~~~v---~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 126 SKIMTEAQASVIRSAI---DSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred cCCCCHHHHHHHHHHH---HcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567777776655544 4567789999999999987777666554
No 443
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=52.14 E-value=1e+02 Score=39.33 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
..|+.++.-+..+.=.||+..+|.|||..++.++..+... ...+++++.-.
T Consensus 182 ~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSlE 232 (421)
T TIGR03600 182 PKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSLE 232 (421)
T ss_pred hhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC
Confidence 3455555433334345899999999999998888666421 23578888843
No 444
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.47 E-value=1.4e+02 Score=38.34 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=29.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chH--HHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNA--VLVNWKSEL 1069 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~S--LL~QW~~Ef 1069 (1953)
...+|+...|+|||-++..+..++.. .+ .++.+|+ |-. .+.||..-.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~-~g--~~V~lItaDtyR~gAveQLk~ya 257 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLK-QN--RTVGFITTDTFRSGAVEQFQGYA 257 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cC--CeEEEEeCCccCccHHHHHHHHh
Confidence 33468889999999998888776643 22 3455555 222 366775533
No 445
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=51.28 E-value=54 Score=39.20 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=42.8
Q ss_pred EEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH--HHHH---HHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhh
Q 000169 1024 LADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA--VLVN---WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA 1098 (1953)
Q Consensus 1024 LADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S--LL~Q---W~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~ 1098 (1953)
+--.-|+|||..++..+....-..+ .+..+|++|.. +... -...+..+.+...-+.+....+.. + ...
T Consensus 2 i~~~r~~GKT~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~ 74 (384)
T PF03237_consen 2 INGGRGSGKTTLIAIWFLWWALTRP-PGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK--I----ILP 74 (384)
T ss_dssp EEE-SSS-HHHHHHHHHHHHHHSSS-S--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE--E----EET
T ss_pred CcCCccccHHHHHHHHHHHHHhhCC-CCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc--E----Eec
Confidence 3445799999887665544443222 23566666643 2222 112233333331111111000000 0 001
Q ss_pred ccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC
Q 000169 1099 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN 1136 (1953)
....|.+.+...- +....+....+++|||||+-.+..
T Consensus 75 nG~~i~~~~~~~~-~~~~~~~G~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 75 NGSRIQFRGADSP-DSGDNIRGFEYDLIIIDEAAKVPD 111 (384)
T ss_dssp TS-EEEEES------SHHHHHTS--SEEEEESGGGSTT
T ss_pred CceEEEEeccccc-cccccccccccceeeeeecccCch
Confidence 2223445554321 123445557899999999887754
No 446
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=51.10 E-value=42 Score=36.62 Aligned_cols=79 Identities=20% Similarity=0.149 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC----CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1330 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1330 LelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG----ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
...+.+|+.+....|+||+|+|.....++.|.+.|=... ++..+ .|.-. ..... |+|++.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~--------------~~~~P-V~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPP--------------AARQP-VLITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SS--------------TT--S-EEEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCC--------------CCCCe-EEEecC
Confidence 478889999999999999999999999999999884332 22333 22211 11123 445433
Q ss_pred ccccccCCccCCeEEEcCCCC
Q 000169 1406 AAGRGLNLQSADTVIIYDPDP 1426 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDppW 1426 (1953)
... -....+++||+++..+
T Consensus 79 ~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp TS------S--SEEEE--SS-
T ss_pred ccc--CCCCCCCEEEECCCCC
Confidence 321 2344599999999988
No 447
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=51.04 E-value=77 Score=38.66 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Ll 1044 (1953)
|++.+-|+|||..+..++..++
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHc
Confidence 7999999999999988887665
No 448
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=51.01 E-value=87 Score=38.89 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1010 ~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
..+..........+|.-|.|+||+..|-++-.. - ....+|+++|-
T Consensus 13 ~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~-s--~r~~~pfv~vn 57 (329)
T TIGR02974 13 EQVSRLAPLDRPVLIIGERGTGKELIAARLHYL-S--KRWQGPLVKLN 57 (329)
T ss_pred HHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh-c--CccCCCeEEEe
Confidence 334444456777899999999999876443221 1 22345766664
No 449
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=50.63 E-value=70 Score=39.28 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=31.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.|...|-..+..+...+.++. +++|... |.||+..+..++..++-
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC 48 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFC 48 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcC
Confidence 466778888888877765543 3444433 68999888888877764
No 450
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=49.93 E-value=24 Score=46.29 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=23.2
Q ss_pred ccCccEEEcccccccCCchhHHHHHhhhc--ccceeEEeccc
Q 000169 1120 KVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGT 1159 (1953)
Q Consensus 1120 kikWd~VIIDEAHrLKN~~SKlsraLk~L--~a~~RLLLTGT 1159 (1953)
..++++.||||+|.+.. ......|+.+ +..+.+++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~--~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSK--QAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhH--HHHHHHhcccccCccCeEEEEec
Confidence 45899999999999853 2233334445 44455444444
No 451
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=49.79 E-value=63 Score=40.34 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=27.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHH-------HhCCCCCeEEEe
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLME-------FKGNYGPHLIIV 1057 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle-------~kg~~GP~LIVV 1057 (1953)
.+...||+.+-|+|||...|-+...+.. .....|.+|+|.
T Consensus 88 ~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvs 134 (402)
T COG3598 88 KGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVS 134 (402)
T ss_pred cCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEE
Confidence 4677799999999999877665544432 122456777776
No 452
>PRK10263 DNA translocase FtsK; Provisional
Probab=49.48 E-value=66 Score=46.29 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=28.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA 1060 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~S 1060 (1953)
.+.|+|-.+|+|||...-++|+.++.... ..-.+++|=|..
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 46799999999999999888887764322 222445555664
No 453
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=49.44 E-value=58 Score=37.18 Aligned_cols=138 Identities=19% Similarity=0.123 Sum_probs=58.1
Q ss_pred EEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcccc
Q 000169 1024 LADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102 (1953)
Q Consensus 1024 LADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fd 1102 (1953)
+.---|=|||-.|+.+..... +...+++||==.-- ...=...+.+.++++.+..+.- .-... .... ..+
T Consensus 8 vytG~GKGKTTAAlGlalRA~---G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~-~f~~~-~~~~-----~~~ 77 (172)
T PF02572_consen 8 VYTGDGKGKTTAALGLALRAA---GHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGK-GFVWR-MNEE-----EED 77 (172)
T ss_dssp EEESSSS-HHHHHHHHHHHHH---CTT--EEEEESS--SS--HHHHHHGGGT--EEEE--T-T-----GGGH-----HHH
T ss_pred EEeCCCCCchHHHHHHHHHHH---hCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCC-ccccc-CCCc-----HHH
Confidence 445578899988888776543 44446666541111 1111122334445544333211 00000 0000 000
Q ss_pred EEEEeHHHHHhhhhcccccCccEEEcccccccCCc----hhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhh
Q 000169 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR----ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL 1175 (1953)
Q Consensus 1103 VVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~----~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFL 1175 (1953)
.-...+.+......+..-.|++||+||.-..-+. ...+...|..-+...-|+|||-= -+.+|..+-+++
T Consensus 78 -~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~---~~~~l~e~ADlV 150 (172)
T PF02572_consen 78 -RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRN---APEELIEAADLV 150 (172)
T ss_dssp -HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS-----HHHHHH-SEE
T ss_pred -HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCC---CCHHHHHhCCee
Confidence 0000111222345566678999999998766442 23444555544566789999964 355555554443
No 454
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=49.42 E-value=1.3e+02 Score=45.86 Aligned_cols=144 Identities=14% Similarity=0.122 Sum_probs=75.4
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCCC
Q 000169 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPS 1075 (1953)
Q Consensus 997 ~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~KwaPs 1075 (1953)
.+..|-+-|..++..++.. ...-.||--.-|+|||-+.-+++. +++.. ...+++++|+.-... ..+++..-...
T Consensus 426 ~~~~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l~~l~~-~~~~~--G~~V~~lAPTgrAA~~L~e~~g~~A~T 500 (1960)
T TIGR02760 426 SEFALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIAQLLLH-LASEQ--GYEIQIITAGSLSAQELRQKIPRLAST 500 (1960)
T ss_pred ccCCCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHH-HHHhc--CCeEEEEeCCHHHHHHHHHHhcchhhh
Confidence 3457899999999877651 223357777899999977655554 44433 347888899875433 33332210000
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeE
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RL 1154 (1953)
+ ...+.. ..... ...|...|......| ..-++||||||..+-. ..+...+... ....+|
T Consensus 501 i------------~~~l~~---l~~~~-~~~tv~~fl~~~~~l--~~~~vlIVDEAsMl~~--~~~~~Ll~~a~~~garv 560 (1960)
T TIGR02760 501 F------------ITWVKN---LFNDD-QDHTVQGLLDKSSPF--SNKDIFVVDEANKLSN--NELLKLIDKAEQHNSKL 560 (1960)
T ss_pred H------------HHHHHh---hcccc-cchhHHHhhcccCCC--CCCCEEEEECCCCCCH--HHHHHHHHHHhhcCCEE
Confidence 0 000000 00000 111222222111111 2568999999998732 2233333333 356788
Q ss_pred EecccCCCCCH
Q 000169 1155 LLTGTPLQNDL 1165 (1953)
Q Consensus 1155 LLTGTPLQNnL 1165 (1953)
+|-|=+-|...
T Consensus 561 VlvGD~~QL~s 571 (1960)
T TIGR02760 561 ILLNDSAQRQG 571 (1960)
T ss_pred EEEcChhhcCc
Confidence 88887766543
No 455
>PHA02518 ParA-like protein; Provisional
Probab=49.19 E-value=62 Score=36.30 Aligned_cols=38 Identities=26% Similarity=0.494 Sum_probs=26.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHH
Q 000169 1027 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKS 1067 (1953)
Q Consensus 1027 EMGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~ 1067 (1953)
-=|.|||..++.+..+|.. .+ .++|+|- |-..+..|..
T Consensus 9 KGGvGKTT~a~~la~~la~-~g--~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHA-DG--HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCCHHHHHHHHHHHHHh-CC--CeEEEEeCCCCCChHHHHH
Confidence 3489999999888887764 22 3566664 6666777864
No 456
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=49.08 E-value=28 Score=46.99 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=64.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHH-HHHHHHHHHHHCCCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAV-LVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SL-L~QW~~Ef~KwaPslk 1077 (1953)
.|-+-|.++|.+. ....++....|+|||.+.+.-|++|++..+ ....+|+|+-+.- ...-...+.+.++.
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~-- 73 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGR-- 73 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCc--
Confidence 4778899988642 234556667999999999999999997533 3456899998653 33333444433211
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh----hcccccCccEEEccccc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~----s~L~kikWd~VIIDEAH 1132 (1953)
...-.|.|.|+..+.... .....+.-.+-|+|+..
T Consensus 74 --------------------~~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 74 --------------------KEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred --------------------ccccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 011247788888765331 11112233566788764
No 457
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=48.83 E-value=68 Score=39.91 Aligned_cols=126 Identities=20% Similarity=0.278 Sum_probs=67.9
Q ss_pred CchHHHHHHHHHHHHHHHhC-------CCC-----CeEEEechHHHHHHHHH---HHHHCCCCeEEEEecchhhHhHHHH
Q 000169 1029 GLGKTVQVMALIAYLMEFKG-------NYG-----PHLIIVPNAVLVNWKSE---LHKWLPSVSCIYYVGAKDQRSRLFS 1093 (1953)
Q Consensus 1029 GLGKTIQAIALIa~Lle~kg-------~~G-----P~LIVVP~SLL~QW~~E---f~KwaPslkVvvy~Gs~deRk~l~~ 1093 (1953)
|+|||=.++.++.+|.+... .+| ..++|.+.+....--+| +.+.+| ..|++ |....+ ...
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V~V--~~dR~~--~~~ 121 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPVIV--GPDRVA--AAR 121 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcEEE--eCcHHH--HHH
Confidence 99999999999998876411 111 26777787744443344 666777 44443 332221 111
Q ss_pred HHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC----chhHHHHHhhhcccceeEEecccCCCC
Q 000169 1094 QEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1094 qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN----~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
.......++|+|.--.+= ..--..++++|++|-.+-+.| +...+..-+..+...-.+++|+.+...
T Consensus 122 ~~~~~~~~dviilDDGfQ----h~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~~ 191 (326)
T PF02606_consen 122 AALKEFPADVIILDDGFQ----HRRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDASD 191 (326)
T ss_pred HHHHHCCCCEEEEcCCcc----cccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcch
Confidence 112223367777643221 111224678899997666655 223333334444333446667776543
No 458
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=48.74 E-value=70 Score=38.40 Aligned_cols=94 Identities=20% Similarity=0.328 Sum_probs=53.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHH---------------------HHHHHHHHHCCCCeEEEEec
Q 000169 1027 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLV---------------------NWKSELHKWLPSVSCIYYVG 1083 (1953)
Q Consensus 1027 EMGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~---------------------QW~~Ef~KwaPslkVvvy~G 1083 (1953)
-=|.|||-.+.+|...|.. .+ .++|+|= |.+++. .|...+.+...++.++.|..
T Consensus 10 kGGvG~TTltAnLA~aL~~-~G--~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~LPfG~ 86 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALAR-LG--ESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDFLPFGQ 86 (243)
T ss_pred CCCCCHHHHHHHHHHHHHH-CC--CcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEEEcCCC
Confidence 3489999999888877764 23 3566653 666552 14444444456677777754
Q ss_pred chhhHhHHHHHHHhhccccEEEEeHHHHHhhhhccc-ccCccEEEccccc
Q 000169 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS-KVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1084 s~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~-kikWd~VIIDEAH 1132 (1953)
........ |.-+......+......+. ...|++||||=.+
T Consensus 87 l~~~~~~~---------~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~ 127 (243)
T PF06564_consen 87 LTEAEREA---------FEQLAQDPQWLARALAALKALGPYDWILIDTPP 127 (243)
T ss_pred CCHHHHHH---------HHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 43322111 1112233344444444454 4578889998655
No 459
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=47.61 E-value=2.6 Score=44.59 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=41.3
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
.+.+| .+++...+|+|+++++.|++++- +-..|+.|+|....+-..|+..
T Consensus 29 ~s~~F~~pvd~~~~pdY~~vI~~PmDL~t-I~~kL~~~~Y~s~~~f~~Dv~L 79 (115)
T cd05504 29 DSWPFLRPVSKIEVPDYYDIIKKPMDLGT-IKEKLNMGEYKLAEEFLSDIQL 79 (115)
T ss_pred CchhhcCCCCccccccHHHHhcCcccHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 34678 88888899999999999999876 7788999999877776666653
No 460
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=47.20 E-value=23 Score=43.30 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=19.6
Q ss_pred CccEEEcccccccC-CchhHHHHHhhhcc
Q 000169 1122 DWKYIIIDEAQRMK-DRESVLARDLDRYR 1149 (1953)
Q Consensus 1122 kWd~VIIDEAHrLK-N~~SKlsraLk~L~ 1149 (1953)
.-|++.|||.|++. +-.--+|-++..|.
T Consensus 103 ~~DVLFIDEIHrl~~~vEE~LYpaMEDf~ 131 (332)
T COG2255 103 EGDVLFIDEIHRLSPAVEEVLYPAMEDFR 131 (332)
T ss_pred cCCeEEEehhhhcChhHHHHhhhhhhhee
Confidence 46899999999994 33445666666663
No 461
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=47.03 E-value=40 Score=43.13 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.0
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (1953)
.+..++|..+.|+|||..+..+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~ 190 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQ 190 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHH
Confidence 345577888899999976555443
No 462
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=46.48 E-value=37 Score=38.61 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=22.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
++.-.|++|||...|..+..+.. ...++||+-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~---~~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEI---AGKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHh---CCCeEEEEEec
Confidence 45678999999877766654432 22456777664
No 463
>PF05729 NACHT: NACHT domain
Probab=46.44 E-value=49 Score=35.09 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHh
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFK 1047 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~k 1047 (1953)
.+|..+.|.|||..+..++..+....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcC
Confidence 36778899999999988887776543
No 464
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=46.13 E-value=42 Score=43.39 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=40.0
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000169 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (1953)
Q Consensus 1006 leGL~WLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (1953)
..+++.++. -+..+.-.+|+-++|+|||..++.++..+.. ..+++|.|.-.....++.....+
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCCHHHHHHHHHH
Confidence 455666553 1112222378999999999998888766653 23578888876556665554444
No 465
>PRK05595 replicative DNA helicase; Provisional
Probab=46.10 E-value=76 Score=40.80 Aligned_cols=61 Identities=13% Similarity=0.011 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
...|+.+..-+..+.=.||+..+|.|||..++.++..+.... ..++|++...-...++...
T Consensus 188 ~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlEms~~~l~~R 248 (444)
T PRK05595 188 FRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLEMSKEQLAYK 248 (444)
T ss_pred hHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecCCCHHHHHHH
Confidence 344555544333333358899999999999988887654222 3478888765444444444
No 466
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=45.84 E-value=1.4e+02 Score=36.17 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=23.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
++.-..|.|||.++..+..++.. . ..+++||.
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~-~--g~~V~li~ 107 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKK-Q--GKSVLLAA 107 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHh-c--CCEEEEEe
Confidence 56689999999999888877653 2 23566665
No 467
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=45.73 E-value=38 Score=42.07 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH
Q 000169 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1009 L~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
..||......+.|.+++-+||+|||-..-+++.+
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhh
Confidence 4566666677889999999999999766565543
No 468
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.28 E-value=1.5e+02 Score=40.11 Aligned_cols=47 Identities=21% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHK 1071 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~K 1071 (1953)
...|.||.-+.|+|||+.+=++... ++--+|-++ ..|+..|.-|=++
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne-------~~~nFlsvkgpEL~sk~vGeSEr 514 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANE-------AGMNFLSVKGPELFSKYVGESER 514 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhh-------hcCCeeeccCHHHHHHhcCchHH
Confidence 4567788999999999988777643 223344444 5577778665544
No 469
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=45.24 E-value=3.1 Score=42.90 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=40.2
Q ss_pred cccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1733 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1733 ~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+.+| .+|....+|+|++++++|++++. +-..|+.|+|.-..+-..|+.+
T Consensus 19 ~~~F~~PV~~~~~pdY~~vIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~l 68 (98)
T cd05513 19 HGFFAFPVTDFIAPGYSSIIKHPMDFST-MKEKIKNNDYQSIEEFKDDFKL 68 (98)
T ss_pred cccccCcCCccccccHHHHHcCccCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 4566 56666789999999999999987 7789999999888777777664
No 470
>PRK05973 replicative DNA helicase; Provisional
Probab=45.00 E-value=1.7e+02 Score=34.97 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=29.4
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000169 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (1953)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (1953)
+..+.-.+|+..+|+|||+.++-++..... . ..+++++.-
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~--Ge~vlyfSl 100 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK-S--GRTGVFFTL 100 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-c--CCeEEEEEE
Confidence 333444689999999999999988877653 2 347778773
No 471
>PRK08939 primosomal protein DnaI; Reviewed
Probab=44.93 E-value=73 Score=39.24 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=31.0
Q ss_pred HHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1008 GLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1008 GL~WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
++.|+..... .+.|-+|.-.+|+|||..+.++...+.. ++ .++++|.
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g--~~v~~~~ 191 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KG--VSSTLLH 191 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cC--CCEEEEE
Confidence 3555554322 2345578899999999999999988874 22 2445554
No 472
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=44.93 E-value=75 Score=36.57 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=37.5
Q ss_pred hhcccccCccEEEcccccccCCc----hhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhh
Q 000169 1115 RSKLSKVDWKYIIIDEAQRMKDR----ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL 1174 (1953)
Q Consensus 1115 ~s~L~kikWd~VIIDEAHrLKN~----~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnF 1174 (1953)
...+..-.|++||+||.-..-+. ...+...|..-+...-++|||- |-+.+|..+-++
T Consensus 108 ~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR---~~p~~Lie~AD~ 168 (178)
T PRK07414 108 QAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGP---EMPESLLAIADQ 168 (178)
T ss_pred HHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECC---CCCHHHHHhCCe
Confidence 44556678999999998766542 3345555555556668999996 445555554443
No 473
>PRK07004 replicative DNA helicase; Provisional
Probab=44.90 E-value=1.1e+02 Score=39.89 Aligned_cols=60 Identities=20% Similarity=0.053 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
.+|+.+..-+..+.=.|||..+|.|||.-++.++...... ...+++++...-...++...
T Consensus 201 ~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fSlEM~~~ql~~R 260 (460)
T PRK07004 201 VDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFSMEMPGTQLAMR 260 (460)
T ss_pred HHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHH
Confidence 3444444333333335899999999999998888766532 23477888754444444333
No 474
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=44.80 E-value=1.1e+02 Score=40.59 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=89.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCC------eEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHH-HHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLN------GILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAV-LVNWKSELH 1070 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~ln------GILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SL-L~QW~~Ef~ 1070 (1953)
..|-|||.-.+.-+.-+++...+ ++|--.=|=|||-.+.++..++.-. ....-.++|++|+-- ..+--.++.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHH
Confidence 47999999999888877775554 3677788999998777666554322 233346778888642 222222222
Q ss_pred ---HHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHH-------HHHhhhhcccccCccEEEcccccccCCchhH
Q 000169 1071 ---KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYE-------FIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (1953)
Q Consensus 1071 ---KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYE-------sL~kd~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (1953)
+-.+++ +.. .......+. +++. .+..+...+...+..+.||||-|...+..-.
T Consensus 140 ~mv~~~~~l-----------~~~-----~~~q~~s~~-i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~ 202 (546)
T COG4626 140 DMVKRDDDL-----------RDL-----CNVQTHSRT-ITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDM 202 (546)
T ss_pred HHHHhCcch-----------hhh-----hccccceeE-EEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHH
Confidence 111111 000 000111111 2211 1223456677789999999999999887633
Q ss_pred HHHHhhhc---ccceeEEec--ccCCCCCHHHHHHHHhhhcccccCCh
Q 000169 1141 LARDLDRY---RCQRRLLLT--GTPLQNDLKELWSLLNLLLPEVFDNR 1183 (1953)
Q Consensus 1141 lsraLk~L---~a~~RLLLT--GTPLQNnL~ELwSLLnFLlP~iF~S~ 1183 (1953)
+..+...+ +....+..| |-|...-+.+-+..+.-++.+...+.
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d~ 250 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKDP 250 (546)
T ss_pred HHHHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcCCc
Confidence 33333334 222334443 23444444444444444444444433
No 475
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.38 E-value=9.7 Score=49.47 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=4.4
Q ss_pred hhcccCCC
Q 000169 68 LAYQVGSL 75 (1953)
Q Consensus 68 ~~~~~~~~ 75 (1953)
+++.+|++
T Consensus 90 ~~~~~~~~ 97 (1179)
T KOG3648|consen 90 PPFPAGGP 97 (1179)
T ss_pred CCcccCCC
Confidence 46666644
No 476
>PRK05636 replicative DNA helicase; Provisional
Probab=44.30 E-value=80 Score=41.56 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1008 GL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.|+.+..-+..+.=.||+..+|.|||.-++.++....... ..+++|+...-...++
T Consensus 254 ~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 254 DLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKH--NKASVIFSLEMSKSEI 309 (505)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEeeCCHHHH
Confidence 3444443233333348899999999998887776544222 3477887654333333
No 477
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=44.21 E-value=48 Score=41.78 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=25.0
Q ss_pred CccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCCC
Q 000169 1122 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 1164 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNn 1164 (1953)
+-.+++|||.||+. .++.-..|-...+--.+++-||--+-.
T Consensus 222 rkTilFiDEiHRFN--ksQQD~fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 222 RKTILFIDEIHRFN--KSQQDTFLPHVENGDITLIGATTENPS 262 (554)
T ss_pred ceeEEEeHHhhhhh--hhhhhcccceeccCceEEEecccCCCc
Confidence 34678899999983 233333344555556677777754333
No 478
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=43.78 E-value=7.3 Score=41.20 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=41.8
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
.+.+| .+|+...+|+|+.++++|++++. +-..|+.|+|--..+-..|+..
T Consensus 25 ~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~L 75 (112)
T cd05510 25 HSTPFLTKVSKREAPDYYDIIKKPMDLGT-MLKKLKNLQYKSKAEFVDDLNL 75 (112)
T ss_pred cccchhcCCChhhcCCHHHHhcCccCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 46788 88888999999999999999987 7789999999877666666553
No 479
>PRK06321 replicative DNA helicase; Provisional
Probab=43.65 E-value=1.2e+02 Score=39.74 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
..|+-++.-+..+.=.|||.-+|.|||.-++.++...... ...+++++...-...++...
T Consensus 214 ~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~--~g~~v~~fSLEMs~~ql~~R 273 (472)
T PRK06321 214 IDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQ--NRLPVGIFSLEMTVDQLIHR 273 (472)
T ss_pred HHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHH
Confidence 3455555433333335899999999999888876655422 23578888765444444443
No 480
>PRK08506 replicative DNA helicase; Provisional
Probab=43.64 E-value=2e+02 Score=37.66 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
...|+.+..-+..+.=.|||..+|.|||..++.++..... ...+++++...--..++...
T Consensus 179 ~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~---~g~~V~~fSlEMs~~ql~~R 238 (472)
T PRK08506 179 FVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN---QDKGVAFFSLEMPAEQLMLR 238 (472)
T ss_pred hHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHh---cCCcEEEEeCcCCHHHHHHH
Confidence 3445544433333434589999999999999888877653 23478888765444444333
No 481
>PRK06620 hypothetical protein; Validated
Probab=43.25 E-value=1.4e+02 Score=34.76 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=52.5
Q ss_pred EEEec-hHHHHHHHHHHHH-HC--CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcc
Q 000169 1054 LIIVP-NAVLVNWKSELHK-WL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIID 1129 (1953)
Q Consensus 1054 LIVVP-~SLL~QW~~Ef~K-wa--PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIID 1129 (1953)
+||.+ +.....|..++.+ |. |....++++|....-+..+.+.+ ....+..+++...... ..+. ..++++||
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~-~~~~~~~~~~~~~~~~--~~~~--~~d~lliD 92 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIW-QNLSNAYIIKDIFFNE--EILE--KYNAFIIE 92 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHH-HhccCCEEcchhhhch--hHHh--cCCEEEEe
Confidence 77788 5566677766665 42 21234555555443333322222 2233444554333221 1121 34789999
Q ss_pred cccccCCchhHHHHHhhhc-ccceeEEecccC
Q 000169 1130 EAQRMKDRESVLARDLDRY-RCQRRLLLTGTP 1160 (1953)
Q Consensus 1130 EAHrLKN~~SKlsraLk~L-~a~~RLLLTGTP 1160 (1953)
|.|++. ...+...+..+ .....+++|+|-
T Consensus 93 di~~~~--~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 93 DIENWQ--EPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred ccccch--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 999762 23444444444 344678899883
No 482
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=43.08 E-value=45 Score=39.77 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.6
Q ss_pred CeEEEcCCCchHHHHH
Q 000169 1021 NGILADEMGLGKTVQV 1036 (1953)
Q Consensus 1021 nGILADEMGLGKTIQA 1036 (1953)
+.||.-+.|+|||-.|
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5799999999999554
No 483
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=42.78 E-value=41 Score=41.84 Aligned_cols=55 Identities=24% Similarity=0.287 Sum_probs=32.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHhCCCCCeEEE-e-chHHHHH-HHH----HHHHHCCCCeEEEEec
Q 000169 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLII-V-PNAVLVN-WKS----ELHKWLPSVSCIYYVG 1083 (1953)
Q Consensus 1026 DEMGLGKTIQAIALIa~Lle~kg~~GP~LIV-V-P~SLL~Q-W~~----Ef~KwaPslkVvvy~G 1083 (1953)
--=|.|||-+++|+..++.+ .+ .+ +|+| + |.+-+.. ... +..+..|++.++-+.-
T Consensus 9 GKGGVGKTT~aaA~A~~lA~-~g-~k-vLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~ 70 (322)
T COG0003 9 GKGGVGKTTIAAATAVKLAE-SG-KK-VLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDP 70 (322)
T ss_pred cCCcccHHHHHHHHHHHHHH-cC-Cc-EEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecH
Confidence 33489999999998888775 34 33 6665 3 6553332 222 2334445666665544
No 484
>PRK08840 replicative DNA helicase; Provisional
Probab=42.65 E-value=2.2e+02 Score=37.33 Aligned_cols=60 Identities=18% Similarity=0.029 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000169 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 1008 GL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
.|+.+..-+..+.=.|||.-+|.|||.-++.++...... ...+++++...--..++...+
T Consensus 206 ~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--~~~~v~~fSlEMs~~ql~~Rl 265 (464)
T PRK08840 206 DLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--QDKPVLIFSLEMPAEQLMMRM 265 (464)
T ss_pred HHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--CCCeEEEEeccCCHHHHHHHH
Confidence 344444433334445899999999999887777665422 234788887654445554443
No 485
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=42.65 E-value=44 Score=40.93 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
.+-+.+.. +|..+...+.+.|++-.||+|||-..-+++.++.
T Consensus 116 ~~~~~~~~---~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 116 IMTAAQRD---VLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCCHHHHH---HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 44444443 4444445677889999999999987767665543
No 486
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=42.43 E-value=2.6 Score=43.89 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=39.4
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCcccc---ccccccCCCcccccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~ee---g~~a~~~d~~~~~~~ 1782 (1953)
..+.|| .+|+. .+++|+.++.+|++++. +-..|++ |+|....+-..|+..
T Consensus 20 ~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~t-I~~kL~~~~~~~Y~s~~~f~~D~~l 73 (109)
T cd05502 20 ELSLPFHEPVSP-SVPNYYKIIKTPMDLSL-IRKKLQPKSPQHYSSPEEFVADVRL 73 (109)
T ss_pred CCChhhcCCCCC-CCCCHHHHCCCCccHHH-HHHHHhcCCCCCCCCHHHHHHHHHH
Confidence 556788 66776 89999999999999877 7788998 588877666655544
No 487
>PHA00012 I assembly protein
Probab=42.30 E-value=43 Score=41.89 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle 1045 (1953)
++.--.|.|||+.++.-|...+.
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHH
Confidence 45566899999999987666553
No 488
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=42.19 E-value=1.2e+02 Score=35.01 Aligned_cols=51 Identities=16% Similarity=0.013 Sum_probs=32.2
Q ss_pred HHHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1006 IVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1006 leGL~WLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
..+|+.++. -+..+.-.+++-+.|+|||..++.++...... ..++++|.=.
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~---~~~v~yi~~e 60 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN---GKKVIYIDTE 60 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 345665553 11122224789999999999999988777642 3466666543
No 489
>PRK08006 replicative DNA helicase; Provisional
Probab=41.93 E-value=1.3e+02 Score=39.23 Aligned_cols=60 Identities=18% Similarity=0.034 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000169 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 1008 GL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
.|+.+..-+..+.=.|||.-+|.|||.-++.++...... ...+++|+...--..++...+
T Consensus 213 ~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlEM~~~ql~~Rl 272 (471)
T PRK08006 213 DLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLEMPGEQIMMRM 272 (471)
T ss_pred HHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHH
Confidence 344444433434445899999999999888887665432 234788887654444444443
No 490
>CHL00195 ycf46 Ycf46; Provisional
Probab=41.43 E-value=30 Score=45.24 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=26.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~ 1063 (1953)
..+.+|.-+.|+|||..+=++...+ .-|++.|-+..+..
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~~ 297 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLFG 297 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhcc
Confidence 4557899999999998886665432 23666666554443
No 491
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=41.01 E-value=4.4 Score=42.62 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=40.0
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 1781 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~ 1781 (1953)
.+.+| .+|+...+|+|+.++.+|.+++. +-..|+.|+|....+-..|+.
T Consensus 17 ~s~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~ 66 (112)
T cd05511 17 DSWPFHTPVNKKKVPDYYKIIKRPMDLQT-IRKKISKHKYQSREEFLEDIE 66 (112)
T ss_pred CchhhcCCCChhhcccHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHH
Confidence 44678 88889999999999999999876 778899999977655555544
No 492
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=40.85 E-value=53 Score=40.67 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~L 1043 (1953)
|.+-+.|.+-+.+++ ..+.+.+++-.+|+|||-..-+++.++
T Consensus 131 g~~~~~~~~~L~~~v---~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 131 GIMTAAQREAIIAAV---RAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCCHHHHHHHHHHH---HcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 456666665554444 467788999999999996666666554
No 493
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=40.79 E-value=70 Score=37.43 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=53.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcccc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fd 1102 (1953)
++...|.+|||..-|-.+... .-...+++|..|.. ...+..-.+.--.|.. ..-
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~---~~~g~~v~vfkp~i---------D~R~~~~~V~Sr~G~~--------------~~A 61 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRY---KEAGMKVLVFKPAI---------DTRYGVGKVSSRIGLS--------------SEA 61 (201)
T ss_pred EEEccCcCcchHHHHHHHHHH---HHcCCeEEEEeccc---------ccccccceeeeccCCc--------------ccc
Confidence 567899999997554433322 22334678877753 1111111111111111 112
Q ss_pred EEEEeHHHHHhhhhcccc-cCccEEEcccccccCCchhHHHHHhhhccc--ceeEEecc
Q 000169 1103 VLVTTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRESVLARDLDRYRC--QRRLLLTG 1158 (1953)
Q Consensus 1103 VVITTYEsL~kd~s~L~k-ikWd~VIIDEAHrLKN~~SKlsraLk~L~a--~~RLLLTG 1158 (1953)
++|-+-..+......... ...+.|+|||||-+.. .+...|..+.. ..++++.|
T Consensus 62 ~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 62 VVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred eecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEec
Confidence 333333334333332221 2268999999999853 44444555533 34566555
No 494
>PHA02542 41 41 helicase; Provisional
Probab=40.52 E-value=1.1e+02 Score=40.16 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=32.6
Q ss_pred HHHHHHHH-HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1006 IVGLQWML-SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1006 leGL~WLl-sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
...|+.+. .-+..+-=.|||..+|.|||..++.++..... ...++|++.
T Consensus 176 ~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~---~g~~Vl~fS 225 (473)
T PHA02542 176 LEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQ---QGYNVLYIS 225 (473)
T ss_pred cHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHh---cCCcEEEEe
Confidence 34455555 22333333589999999999999888877652 234777776
No 495
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=40.51 E-value=93 Score=36.75 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=29.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.+|+..+|.|||.-++.++..+.... ..++|++...
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlE 57 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLE 57 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESS
T ss_pred EEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCC
Confidence 58999999999999999888777532 2588999864
No 496
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=40.17 E-value=52 Score=40.85 Aligned_cols=111 Identities=16% Similarity=0.260 Sum_probs=62.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEechH------HHHHHHHHHHHHC----CCCeEEEEecchh
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPNA------VLVNWKSELHKWL----PSVSCIYYVGAKD 1086 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~---kg~~GP~LIVVP~S------LL~QW~~Ef~Kwa----PslkVvvy~Gs~d 1086 (1953)
.-|++..+||+||+- ||..|+.. .+....+.+|+|.- .+.-|...+.+=- |+-.++...|
T Consensus 88 ~I~~VYGPTG~GKSq----LlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~--- 160 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQ----LLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTG--- 160 (369)
T ss_pred eEEEEECCCCCCHHH----HHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccc---
Confidence 347889999999993 44444432 33445688888853 3556888876521 1112222222
Q ss_pred hHhHHHHHHHhhccccEEEEeHHHHHhhhh-----------cccccCccEEEcccccccCCchhHHHHHhhhc
Q 000169 1087 QRSRLFSQEVAALKFNVLVTTYEFIMYDRS-----------KLSKVDWKYIIIDEAQRMKDRESVLARDLDRY 1148 (1953)
Q Consensus 1087 eRk~l~~qei~~~~fdVVITTYEsL~kd~s-----------~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L 1148 (1953)
.-..+.|-.||+-+..+.. .-.+...-.||+|||=.-......++.....|
T Consensus 161 -----------t~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAl 222 (369)
T PF02456_consen 161 -----------TFRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHAL 222 (369)
T ss_pred -----------cccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcC
Confidence 1235678888887765421 12334677899999965433333344333333
No 497
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=39.93 E-value=2.3e+02 Score=34.00 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=26.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
.+++-+.|+|||..++.++..... ...++|+|.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis 71 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVT 71 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEE
Confidence 378999999999999888776653 234788887
No 498
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=39.90 E-value=32 Score=40.67 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH
Q 000169 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1009 L~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~L 1043 (1953)
..+|......+.+.|++-++|+|||-..-+++.++
T Consensus 117 ~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 117 AEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHhhccccceEEEEECCCccccchHHHHHhhhc
Confidence 34555555667788999999999998877666543
No 499
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=39.71 E-value=2.6 Score=41.04 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=40.4
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
..+.+| .+++...+++|++++..|.+++. +-..|+.|+|....+-..|+.+
T Consensus 12 ~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~-I~~kl~~~~Y~s~~~f~~Dv~~ 63 (84)
T PF00439_consen 12 PISSPFSKPVDPKEYPDYYEIIKNPMDLST-IRKKLENGKYKSIEEFEADVRL 63 (84)
T ss_dssp TTGGGGSSSTHTTTSTTHHHHSSSS--HHH-HHHHHHTTSSSSHHHHHHHHHH
T ss_pred CCchhhcCCCChhhCCCHHHHHhhccchhh-hhHHhhccchhhHHHHHHHHHH
Confidence 366788 77799999999999999999987 7799999999876666655543
No 500
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=39.61 E-value=25 Score=47.82 Aligned_cols=57 Identities=12% Similarity=-0.070 Sum_probs=27.1
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCccccCcchhHHHHHHHHHHHh
Q 000169 433 YLRQLNRSSPQSAIPSSDGSSANNFSSQGG--LATQMPQQRLGFTKHQLHVLKAQILAF 489 (1953)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1953)
-.|.+-|..-|.-+.-..|-.+|--+...- -|----.++..-..+-|..+|-|-.+.
T Consensus 130 ~~~~~~~~~~qp~~~~~~~~~~~~~~~~d~~~~~~d~ns~~~~~~~~rl~~~~~~~~~~ 188 (1516)
T KOG1832|consen 130 TGREMGQTDVQPDGEFEIDDVFNVSGVVDCKIKPGDDNSVRDDPSRHRLNRSKSRGRGR 188 (1516)
T ss_pred HHHHHhhhccCCCcceecchhccccccceeccCCCCccchhhhHHHHHHHHHhhhhhhh
Confidence 377787777776665555544443222210 111122233344455555555554443
Done!